Query 026345
Match_columns 240
No_of_seqs 158 out of 917
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099 Glycogen phosphorylase 100.0 1.1E-76 2.3E-81 573.3 12.6 216 22-240 111-366 (843)
2 PF00343 Phosphorylase: Carboh 100.0 1.4E-76 3.1E-81 588.9 9.9 211 24-240 2-248 (713)
3 TIGR02093 P_ylase glycogen/sta 100.0 6.1E-74 1.3E-78 575.1 17.3 217 18-240 76-331 (794)
4 cd04300 GT1_Glycogen_Phosphory 100.0 1.7E-73 3.8E-78 572.9 17.2 217 18-240 79-334 (797)
5 PRK14985 maltodextrin phosphor 100.0 2.9E-73 6.3E-78 569.9 15.8 215 20-240 87-336 (798)
6 PRK14986 glycogen phosphorylas 100.0 1.6E-71 3.4E-76 558.9 16.6 216 19-240 97-347 (815)
7 COG0058 GlgP Glucan phosphoryl 100.0 1.3E-56 2.8E-61 447.3 11.6 197 21-240 91-298 (750)
8 TIGR02094 more_P_ylases alpha- 100.0 4.1E-44 8.9E-49 353.7 12.6 174 37-240 8-194 (601)
9 cd04299 GT1_Glycogen_Phosphory 100.0 4.7E-44 1E-48 361.1 12.8 175 34-240 92-282 (778)
10 PF08323 Glyco_transf_5: Starc 96.6 0.003 6.5E-08 56.2 4.6 135 45-224 13-151 (245)
11 cd03791 GT1_Glycogen_synthase_ 96.2 0.031 6.7E-07 52.9 9.2 145 39-228 7-151 (476)
12 TIGR02095 glgA glycogen/starch 95.1 0.15 3.2E-06 48.8 9.4 139 39-224 8-146 (473)
13 PRK00654 glgA glycogen synthas 88.3 1.7 3.8E-05 41.7 7.4 37 40-76 9-45 (466)
14 PRK14098 glycogen synthase; Pr 86.6 3.7 8.1E-05 40.2 8.7 148 37-227 11-161 (489)
15 PRK14099 glycogen synthase; Pr 60.3 46 0.001 32.6 8.3 40 37-76 9-48 (485)
16 PLN02939 transferase, transfer 52.0 89 0.0019 34.1 9.3 147 27-227 480-631 (977)
17 PF14737 DUF4470: Domain of un 35.3 44 0.00096 25.6 3.1 39 177-221 28-67 (100)
18 cd01149 HutB Hemin binding pro 28.0 45 0.00097 28.5 2.2 42 29-72 47-88 (235)
19 cd00127 DSPc Dual specificity 22.6 67 0.0015 24.8 2.1 32 205-240 81-115 (139)
20 cd01141 TroA_d Periplasmic bin 22.5 1.1E+02 0.0025 25.0 3.6 55 16-72 42-99 (186)
21 TIGR00695 uxuA mannonate dehyd 22.0 80 0.0017 30.9 2.9 55 19-75 47-106 (394)
22 cd01143 YvrC Periplasmic bindi 20.4 89 0.0019 25.5 2.5 41 29-72 49-89 (195)
No 1
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-76 Score=573.33 Aligned_cols=216 Identities=47% Similarity=0.773 Sum_probs=202.8
Q ss_pred HHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC-CC
Q 026345 22 ALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN-NS 83 (240)
Q Consensus 22 ~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~-~~ 83 (240)
+.|..-|-+| ++|.++|+|++||||||||||+||||||||||+|++||||||+||+ |+ +|
T Consensus 111 eAl~qlG~dl--Eel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyGiF~QkI~~g~Q~E~~ddWL~~gn 188 (843)
T KOG2099|consen 111 EALYQLGLDL--EELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYGIFKQKITDGWQVEEPDDWLRYGN 188 (843)
T ss_pred HHHHHhCcCH--HHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehhhHHHHhcCCccccchHHHHHcCC
Confidence 4556667666 9999999999999999999999999999999999999999999999 66 99
Q ss_pred Ccccccc-----------------cccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHh
Q 026345 84 SLKMVRK-----------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAY 146 (240)
Q Consensus 84 ~We~~~~-----------------~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~ 146 (240)
|||+.|+ ..+|.+++.|.|+|||+|||||.|++|||+|||+|+ ++..|+|..||.|||.+|+
T Consensus 189 PWE~~R~e~~lPV~FyGkV~~~~~g~kWid~q~V~A~~YD~PvPGyk~n~vntlRLWsak-a~~df~l~~fN~Gdy~~av 267 (843)
T KOG2099|consen 189 PWEKARPEVMLPVHFYGKVEHTPDGSKWIDTQVVLAMPYDTPVPGYKNNTVNTLRLWSAK-APNDFDLKDFNVGDYIQAV 267 (843)
T ss_pred chhhcCcceEeEEEEEEEEEeCCCcceeecceeEEEeccCCCCCCcccCcceeeeeeccC-CCCCCCHHhccCchHHHHH
Confidence 9999997 256999999999999999999999999999999999 7889999999999999999
Q ss_pred hhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcC-----CCCCCCCCCCceeEEeCCCCccchH
Q 026345 147 AAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLG-----EPVNWENFPEKVAVQMNDTHPTLCI 221 (240)
Q Consensus 147 ~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g-----~~~~l~~l~~~~~ihlNDtHpalai 221 (240)
..++.+++||+||||||+..+||+||||||||+|+|++|||||||++... ...++++||++++||||||||+|||
T Consensus 268 ~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~~~~~~~~FPdkVAiQlNDTHPtLaI 347 (843)
T KOG2099|consen 268 LDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREPVRTNFEEFPDKVAIQLNDTHPTLAI 347 (843)
T ss_pred HHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCcccccccchhhCcHhheeeccCCCccccH
Confidence 99999999999999999999999999999999999999999999987542 2235999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhhcC
Q 026345 222 PDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 222 ~ElmR~L~de~gl~wd~A~ 240 (240)
|||||+|||.+|++||+||
T Consensus 348 pELmRiLvD~e~l~W~~AW 366 (843)
T KOG2099|consen 348 PELMRILVDLEGLDWDKAW 366 (843)
T ss_pred HHHHHHHHhcccCCHHHHH
Confidence 9999999999999999997
No 2
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=1.4e-76 Score=588.94 Aligned_cols=211 Identities=49% Similarity=0.797 Sum_probs=187.3
Q ss_pred HHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC-CCCc
Q 026345 24 ILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN-NSSL 85 (240)
Q Consensus 24 ~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~-~~~W 85 (240)
|...|..| ++|+++|+||+||||||||||||||||+|+||+|++||||||+||+ |+ ++||
T Consensus 2 l~~lg~~~--~~l~~~E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pW 79 (713)
T PF00343_consen 2 LKELGFDL--EELEEQEPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPW 79 (713)
T ss_dssp HHHTT--H--HHHHTTS--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TT
T ss_pred hhHhCCCH--HHHHhhCcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCce
Confidence 45566665 8999999999999999999999999999999999999999999999 55 8999
Q ss_pred ccccc------------------cccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHhh
Q 026345 86 KMVRK------------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYA 147 (240)
Q Consensus 86 e~~~~------------------~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~ 147 (240)
|++|+ ..+|.+++.|+|||||+||+||+|++|||||||+|+ +.++||+..||.|||.+|++
T Consensus 80 e~~r~~~~~~V~f~G~v~~~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~vn~LRLw~a~-~~~~fd~~~fn~gdy~~a~~ 158 (713)
T PF00343_consen 80 EIRRPDESYEVKFGGRVEDDGGRKVRWEDGETVLAVPYDMPIPGYRTKTVNTLRLWSAE-PSEEFDLESFNRGDYIKAVE 158 (713)
T ss_dssp SEEEGGGEEEEEESEEEE-EETTEEEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-ESSSTTHHHHHTTCHHHHHH
T ss_pred EEecCCceEEEeccceEEecCCCcccccCCeEEEEEecCceeecCCCCceEEEEEeccC-CCcccChhhcCCCcHHHHHH
Confidence 99886 125889999999999999999999999999999999 78899999999999999999
Q ss_pred hhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHH
Q 026345 148 AITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRI 227 (240)
Q Consensus 148 n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~ 227 (240)
+++.+|+||+||||+|++++||+|||||||||+|||+|||||+|++.++ ++++||+++||||||||||||||||||+
T Consensus 159 ~~~~~e~is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lqdiir~~~~~~~---~~~~~~~~~~ihlNdtHpa~ai~ElmR~ 235 (713)
T PF00343_consen 159 EKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKSHG---DLREFPDKVVIHLNDTHPAFAIPELMRI 235 (713)
T ss_dssp HHHHHHGGGTBSS-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CGGGHHHHEEEEEESSTTTTHHHHHHHH
T ss_pred HHHHhhceeeecCCCCccccchhhhhhhHhhhhhhHHHHHHHHHHHhCC---ChHHCCcceEEeecCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875 7999999999999999999999999999
Q ss_pred HHHhcCCChhhcC
Q 026345 228 LMDVKGLSWNDII 240 (240)
Q Consensus 228 L~de~gl~wd~A~ 240 (240)
|||++|++|++||
T Consensus 236 L~de~gl~~~eA~ 248 (713)
T PF00343_consen 236 LMDEEGLSWDEAW 248 (713)
T ss_dssp HHHTT---HHHHH
T ss_pred HHHHcCCCHHHHH
Confidence 9999999999996
No 3
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=6.1e-74 Score=575.07 Aligned_cols=217 Identities=46% Similarity=0.728 Sum_probs=202.9
Q ss_pred hhHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------c
Q 026345 18 PHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------L 80 (240)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l 80 (240)
..-++.|+..|..| ++|+++|+||+|||||||||||||||||||||+|++||||||+||| +
T Consensus 76 ~~~~~~l~~lg~~l--~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl 153 (794)
T TIGR02093 76 DEVKEALRELGLDL--EEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWL 153 (794)
T ss_pred HHHHHHHHHhCCCH--HHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEcCCCcC
Confidence 34578899999888 8999999999999999999999999999999999999999999999 2
Q ss_pred C-CCCccccccc---------------------ccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCC
Q 026345 81 N-NSSLKMVRKK---------------------LQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138 (240)
Q Consensus 81 ~-~~~We~~~~~---------------------~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~ 138 (240)
. ++|||++++. ..|.+.+.|+|||||+||+||+|+++|+||||+++ +.+.|++..||
T Consensus 154 ~~~~pwe~~r~~~~~~V~f~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~~vn~LRLW~a~-~~~~f~l~~fn 232 (794)
T TIGR02093 154 RYGNPWEIRRPDRSYEVRFGGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFN 232 (794)
T ss_pred CCCCCceeecCCcEEEEEeCCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCCceEEEEEEEec-CccccCHhhcc
Confidence 3 7777776651 13778899999999999999999999999999999 67789999999
Q ss_pred CcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCcc
Q 026345 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPT 218 (240)
Q Consensus 139 ~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpa 218 (240)
.|||.+|++|++.+|+||++|||+|++++||++||||||||||||+|||||+|++.++ +++.||++++|||||||||
T Consensus 233 ~gdy~~a~~~~~~~e~It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqdiir~~~~~~~---~l~~l~~~~~ihlNDtHpa 309 (794)
T TIGR02093 233 AGDYYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETHP---DLSDFPKKVAIQLNDTHPA 309 (794)
T ss_pred CccHhhhhhChhhcCccccCCcCCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHhCC---ChhhCCcceEEEecCCchH
Confidence 9999999999999999999999999999999999999999999999999999998864 7999999999999999999
Q ss_pred chHHHHHHHHHHhcCCChhhcC
Q 026345 219 LCIPDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 219 lai~ElmR~L~de~gl~wd~A~ 240 (240)
||||||||+|||++|++||+||
T Consensus 310 lai~ElmR~L~d~~gl~wd~Aw 331 (794)
T TIGR02093 310 LAIPELMRLLIDEEGMDWDEAW 331 (794)
T ss_pred HHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999999999999999996
No 4
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=1.7e-73 Score=572.94 Aligned_cols=217 Identities=47% Similarity=0.768 Sum_probs=204.0
Q ss_pred hhHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------c
Q 026345 18 PHRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------L 80 (240)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l 80 (240)
..-++.|+..|..| ++|+++|+||+|||||||||||||||||||||+|++||||||+||| +
T Consensus 79 ~~~~~~L~~lg~~l--~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~pd~Wl 156 (797)
T cd04300 79 DEVREALAELGVDL--EDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWL 156 (797)
T ss_pred HHHHHHHHHhCCCH--HHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEecCCCcc
Confidence 44578899999888 8999999999999999999999999999999999999999999999 2
Q ss_pred C-CCCccccccc---------------------ccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCC
Q 026345 81 N-NSSLKMVRKK---------------------LQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138 (240)
Q Consensus 81 ~-~~~We~~~~~---------------------~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~ 138 (240)
. ++|||++++. ..|.+++.|+|||||+||+||+|+++|+||||+++ +++.||++.||
T Consensus 157 ~~~~pwe~~r~~~~~~V~f~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~-~~~~~dl~~fn 235 (797)
T cd04300 157 RYGNPWEIRRPDVAVPVRFGGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAE-ASEEFDLDAFN 235 (797)
T ss_pred CCCCCceEecCCcEEEEEECCEEEEeecCCcceeeecCcceEEeeecceeecCCCCCceEEEEEEEee-CCCCcCHHHhc
Confidence 3 7788877751 14777999999999999999999999999999999 68889999999
Q ss_pred CcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCcc
Q 026345 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPT 218 (240)
Q Consensus 139 ~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpa 218 (240)
+|||.+|++|++.+|+||++|||+|++++||+|||||||||||||+|+|||+|++.++ +++.||++++|||||||||
T Consensus 236 ~gdy~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qdilr~~~~~~~---~~~~l~~~~~ihlNDtHpa 312 (797)
T cd04300 236 RGDYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTHG---PLSEFPDKVAIQLNDTHPA 312 (797)
T ss_pred CCchhhHHhhHHHhhhhhcccCCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHhCC---ChhhCCCceEEEecCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999876 7999999999999999999
Q ss_pred chHHHHHHHHHHhcCCChhhcC
Q 026345 219 LCIPDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 219 lai~ElmR~L~de~gl~wd~A~ 240 (240)
||||||||+|||++|++||+||
T Consensus 313 lai~ElmR~L~d~~gl~w~~Aw 334 (797)
T cd04300 313 LAIPELMRILVDEEGLDWDEAW 334 (797)
T ss_pred HHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999999999999999996
No 5
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=2.9e-73 Score=569.92 Aligned_cols=215 Identities=39% Similarity=0.590 Sum_probs=200.2
Q ss_pred HHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC-
Q 026345 20 RKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN- 81 (240)
Q Consensus 20 ~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~- 81 (240)
-++.|+..|..| ++|+++|+||+|||||||||||||||||||||+|++||||||+||| +.
T Consensus 87 ~~~al~~lg~~l--~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~ 164 (798)
T PRK14985 87 VQDVLKAYDINL--TDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRD 164 (798)
T ss_pred HHHHHHHcCCCH--HHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEECCCCcccC
Confidence 467888888887 8999999999999999999999999999999999999999999999 23
Q ss_pred CCCcccccc----------c-------ccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHH
Q 026345 82 NSSLKMVRK----------K-------LQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAK 144 (240)
Q Consensus 82 ~~~We~~~~----------~-------~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~ 144 (240)
++||++.++ + ..|.+++.|.|||||+||+||+|+++|+||||+++ ++++|++..||.|||.+
T Consensus 165 ~~pwe~~r~~~~~~V~f~G~v~~~~G~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~-~~~~~~l~~fn~gdy~~ 243 (798)
T PRK14985 165 SYPWFRHNEALDVQVGIGGKVTKQDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFLR 243 (798)
T ss_pred CCCceecCCCceEEEeeCCEEEeeCCcEEEECCEEEEEEeccccccCCCCCceEEEEEeEcC-CCCccCHHHcCCcchhh
Confidence 667766554 0 14778888999999999999999999999999999 68899999999999999
Q ss_pred HhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHH
Q 026345 145 AYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDL 224 (240)
Q Consensus 145 a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~El 224 (240)
|++|++.+|+||++|||+|++++||+|||||||||||||+|+|||+|++.+. +++.||++++|||||||||||||||
T Consensus 244 a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqdilr~~~~~~~---~l~~l~~~~~ihlNDtHpalai~El 320 (798)
T PRK14985 244 AEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAGR---KLHELPDYEVIQLNDTHPTIAIPEL 320 (798)
T ss_pred ccccchhhcchhceecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChhhCCCCcEEEecCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998653 7999999999999999999999999
Q ss_pred HHHHHHhcCCChhhcC
Q 026345 225 IRILMDVKGLSWNDII 240 (240)
Q Consensus 225 mR~L~de~gl~wd~A~ 240 (240)
||+|||++|++||+||
T Consensus 321 mR~L~d~~gl~wd~Aw 336 (798)
T PRK14985 321 LRVLLDEHQLSWDDAW 336 (798)
T ss_pred HHHHHHhcCCCHHHHH
Confidence 9999999999999996
No 6
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=1.6e-71 Score=558.86 Aligned_cols=216 Identities=40% Similarity=0.675 Sum_probs=202.3
Q ss_pred hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC
Q 026345 19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN 81 (240)
Q Consensus 19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~ 81 (240)
--++.|...|.+| ++|+++|+||+|||||||||||||||||||||+|++||||||+||| +.
T Consensus 97 ~~~~al~~lg~~l--~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F~Q~I~dG~Q~E~pd~w~~ 174 (815)
T PRK14986 97 DVQGALEAMGLDL--EELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDYWLE 174 (815)
T ss_pred HHHHHHHHcCCCH--HHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEEcCCCccC
Confidence 3477889999888 8999999999999999999999999999999999999999999999 23
Q ss_pred -CCCcccccc-----------------cccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchH
Q 026345 82 -NSSLKMVRK-----------------KLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHA 143 (240)
Q Consensus 82 -~~~We~~~~-----------------~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~ 143 (240)
++||++.++ ...|.+++.|+|||||+|||||+|+++|+||||+++ ++++||+..||.|+|.
T Consensus 175 ~~~pwe~~r~~~~~~V~f~g~~~~~g~~~~w~~~~~v~avpyD~pipgy~t~~vn~lRLW~a~-~~~~fd~~~fn~g~y~ 253 (815)
T PRK14986 175 YGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILAVAYDQIIPGYDTDATNTLRLWSAQ-ASSEINLGKFNQGDYF 253 (815)
T ss_pred CCCceeEecCCcEEEEEeCCEEEecCceeEeeCCeeEEEEeCCccccCCCCCceEEEEEEEee-cCcccCHhhcccccHH
Confidence 667776654 125888999999999999999999999999999999 6888999999999999
Q ss_pred HHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHH
Q 026345 144 KAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPD 223 (240)
Q Consensus 144 ~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~E 223 (240)
.|++.++.+|+||++|||+|++++||++||||||||||||+|||||+|++.+. +++.||++++|||||||||||+||
T Consensus 254 ~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di~r~~~~~~~---~l~~l~~~v~ihlNDtHpa~~i~E 330 (815)
T PRK14986 254 AAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQLHK---TYDNLADKIAIHLNDTHPVLSIPE 330 (815)
T ss_pred HHhhccchhhccccccCCCCCCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCC---CHhhCCcccEEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998874 799999999999999999999999
Q ss_pred HHHHHHHhcCCChhhcC
Q 026345 224 LIRILMDVKGLSWNDII 240 (240)
Q Consensus 224 lmR~L~de~gl~wd~A~ 240 (240)
|||+|||++|++||+||
T Consensus 331 lmR~L~d~~gl~~~eA~ 347 (815)
T PRK14986 331 LMRLLIDEHKFSWDDAF 347 (815)
T ss_pred HHHHHHHhcCCCHHHHH
Confidence 99999999999999996
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-56 Score=447.33 Aligned_cols=197 Identities=39% Similarity=0.616 Sum_probs=169.0
Q ss_pred HHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCccccc---CCCCcccccccccccC-
Q 026345 21 KALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACL---NNSSLKMVRKKLQKVG- 96 (240)
Q Consensus 21 ~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl---~~~~We~~~~~~~~~~- 96 (240)
|+.++. .+.|+.++.+.|+|+++| ||||||||||||||||||+|++||||+|+|||+ ..++||++.| ..|..
T Consensus 91 ~~~l~~--~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p-~~w~~~ 166 (750)
T COG0058 91 QEALKE--LGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELP-DEWLKY 166 (750)
T ss_pred HhhHHh--hhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecc-hhhhcc
Confidence 344444 455669999999999999 999999999999999999999999999999996 3999999988 23321
Q ss_pred ---CeeEE---EEeeeeecCCCCCCCeEEEEEEEeeecCc-ccccccCCCcchHHHhhhhhcccccccccccCCchhhhh
Q 026345 97 ---GENVM---DVAYDVPIPGYKTKTTLNLRLWSTKVAAE-DFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARK 169 (240)
Q Consensus 97 ---~~~v~---av~yD~pi~Gy~~~~v~~lRLW~a~v~~~-~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~Gk 169 (240)
-+.+. |+|||+||+||+| ++|++|||+++ +++ +|+|..||.+ +|.+.+|+||++|||+|+ +
T Consensus 167 ~~pwe~~r~~~a~~~d~~V~g~~~-~~~~lrlW~a~-~~~~~~~l~~~n~~------e~~~~~~~iT~~LYp~Ds----~ 234 (750)
T COG0058 167 GNPWEFLRDAEGVPYDVPVPGYDN-RVVTLRLWQAQ-VGRVPLYLLDFNVG------ENKNDARNITRVLYPGDS----K 234 (750)
T ss_pred CCcceeecccCCceeeeeEEeccC-cEEEEEEEEEe-cCccceEeecCCCc------ccchhhhhHHhhcCCCCc----H
Confidence 11122 6999999999999 89999999999 566 8888888877 489999999999999998 7
Q ss_pred hhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHHHHHhcCCChhhcC
Q 026345 170 TLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 170 elRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~de~gl~wd~A~ 240 (240)
++||+|||||||||+|+|++++.++++ +++.+ +.||||||||||++||||+|+|++|++|++||
T Consensus 235 elRl~Qeyfl~~agvq~I~~~~~~~~~---~~~~~----~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~ 298 (750)
T COG0058 235 ELRLKQEYFLGSAGVQDILARGHLEHH---DLDVL----ADHLNDTHPALAIPELMRLLIDEEGLSWDEAW 298 (750)
T ss_pred HHHHhhhheeeeHHHHHHHHHhhhccc---cccch----hhhhcCCChhHhHHHHHHHHHHHhcCCHHHHH
Confidence 899999999999999999998544432 45544 67799999999999999999999999999996
No 8
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=4.1e-44 Score=353.65 Aligned_cols=174 Identities=22% Similarity=0.263 Sum_probs=146.0
Q ss_pred hcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc----cCCCCcccccccccccC----CeeEE-----EE
Q 026345 37 LLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC----LNNSSLKMVRKKLQKVG----GENVM-----DV 103 (240)
Q Consensus 37 ~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy----l~~~~We~~~~~~~~~~----~~~v~-----av 103 (240)
+.++..+++||||||||||||||||||||+|++||||+|+||| ++.++||++.+ ..|.. -+.|. -+
T Consensus 8 ~g~~~~~p~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~-~~~~~~~~p~~~~~~~~g~~~ 86 (601)
T TIGR02094 8 YGLHESLPIYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAY-PNNDFESLPIEKVLDTDGKWL 86 (601)
T ss_pred cccCCCCCccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecC-CccccCCCceEEEecCCCCeE
Confidence 4567889999999999999999999999999999999999999 44799999987 22211 00111 25
Q ss_pred eeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccch
Q 026345 104 AYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183 (240)
Q Consensus 104 ~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~gg 183 (240)
+|++|++| +++++|+|++++ + .++++.+++++. +|...+|.||++|||+| +++|++||||||+||
T Consensus 87 ~~~v~i~g----~~~~~rlw~~~~-~-~v~lylld~~~~----~n~~~~R~it~~LY~~D-----~~~R~~Qe~fl~~a~ 151 (601)
T TIGR02094 87 KISVRIRG----RDVYAKVWRVQV-G-RVPLYLLDTNIP----ENSEDDRWITGRLYGGD-----KEMRIAQEIVLGIGG 151 (601)
T ss_pred EEEEecCC----cEEEEEEEEEEe-C-CCCEEEecCCCc----ccchhhcCccCCCCCCC-----HHHHHHHHHHHHHHH
Confidence 88999999 589999999994 4 488887876653 68899999999999998 468999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHHHHHhcCCChhhcC
Q 026345 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 184 vq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~de~gl~wd~A~ 240 (240)
+|+| +++ .+ ++.+||+||+||||+++||||++| +++++|++|+
T Consensus 152 l~~l-~~l--------~~----~pdviH~ND~Htal~~~el~r~l~-~~~~~~~~a~ 194 (601)
T TIGR02094 152 VRAL-RAL--------GI----DPDVYHLNEGHAAFVTLERIRELI-AQGLSFEEAW 194 (601)
T ss_pred HHHH-HHc--------CC----CceEEEeCCchHHHHHHHHHHHHH-HcCCCHHHHH
Confidence 9976 433 12 689999999999999999999999 7899999873
No 9
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=4.7e-44 Score=361.06 Aligned_cols=175 Identities=23% Similarity=0.314 Sum_probs=148.7
Q ss_pred hhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc----cCCCCcccccccc-----------c-ccCC
Q 026345 34 SLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC----LNNSSLKMVRKKL-----------Q-KVGG 97 (240)
Q Consensus 34 ~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy----l~~~~We~~~~~~-----------~-~~~~ 97 (240)
+.=+.+...+++||||||||||||||||||||+|++||||+|++|| ++.++||++.+.. . ..|.
T Consensus 92 s~E~gl~~~lpiYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~~~~~G~ 171 (778)
T cd04299 92 SMEFGLHESLPIYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVRDADGE 171 (778)
T ss_pred ccccccCCCCCccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEEecCCCC
Confidence 3445778899999999999999999999999999999999999999 4579999998721 1 1233
Q ss_pred eeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhh
Q 026345 98 ENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQY 177 (240)
Q Consensus 98 ~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEy 177 (240)
+.+++ +|++|+ .+++|+|+++| + .++++.++++++ +|...+|.||++||++|+ ++||+|||
T Consensus 172 ~~~v~----v~l~g~----~v~~rvw~~~v-g-~v~lylLDtd~~----~n~~~~R~iT~~LYg~D~-----~~Rl~Qe~ 232 (778)
T cd04299 172 PVRVS----VELPGR----TVYARVWKAQV-G-RVPLYLLDTDIP----ENSPDDRGITDRLYGGDQ-----ETRIQQEI 232 (778)
T ss_pred eEEEE----EeeCCC----ceEEEEEEEEc-C-CCCEEEecCCcc----ccchhhcccccCCCCCcH-----HHHHHHHH
Confidence 44444 788985 57999999994 5 489988887776 688999999999999984 68999999
Q ss_pred hhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHHHHHhcCCChhhcC
Q 026345 178 TLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 178 fLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~de~gl~wd~A~ 240 (240)
|||+||+|+| +++ | + ++.+|||||+||||+++||||+||+++|++|++|+
T Consensus 233 ~Lg~agl~~L-r~l----g----~----~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~ 282 (778)
T cd04299 233 LLGIGGVRAL-RAL----G----I----KPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEAL 282 (778)
T ss_pred HHHHHHHHHH-HHh----C----C----CCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999976 655 2 2 47899999999999999999999998899999873
No 10
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=96.57 E-value=0.003 Score=56.19 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=73.6
Q ss_pred CCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccC--CCCcccccccccccCCeeEEEEeeeeecCCCCCCCeEEEEE
Q 026345 45 LGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLN--NSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRL 122 (240)
Q Consensus 45 LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~--~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRL 122 (240)
.-.||||..++..-++++.+|..+.-+--+| |.++ .+..+..........+ . +++.. . ..+++
T Consensus 13 ~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y--~~~~~~~~~~~~~~~~~~~~~~-~-------v~~~~-~----~~~~v 77 (245)
T PF08323_consen 13 AKVGGLGDVVGSLPKALAKQGHDVRVIMPKY--GFIDEEYFQLEPVRRLSVPFGG-P-------VPVGV-W----YEVRV 77 (245)
T ss_dssp B-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T--HHHHHHCTTEEEEEEES-STTC-E-------EEEE---------EEE
T ss_pred cccCcHhHHHHHHHHHHHhcCCeEEEEEccc--hhhhhhhhcceEEEEecccccc-c-------ccccc-c----eEEEE
Confidence 6789999999999999999999998877777 3333 2111111110000111 1 12111 0 45788
Q ss_pred EEeeecCcccccccCCCcchHHHhhhhhcccccccccccCC-chhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCC
Q 026345 123 WSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGD-EYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNW 201 (240)
Q Consensus 123 W~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D-~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l 201 (240)
|+..+ ++++.+.++...|. .| ..+|++. ..+.-...|.. ||+-|.+..+
T Consensus 78 ~~~~~--~~v~v~~i~~~~~f--------~r---~~iY~~~~~~~~d~~~rf~---~fs~a~le~~-------------- 127 (245)
T PF08323_consen 78 YRYPV--DGVPVYFIDNPEYF--------DR---PGIYGDNGGDYPDNAERFA---FFSRAALELL-------------- 127 (245)
T ss_dssp EEEEE--TTEEEEEEESHHHH--------GS---SSSSBSTSSBHTTHHHHHH---HHHHHHHHHH--------------
T ss_pred EEEEc--CCccEEEecChhhc--------cc---cceeccCCCcchhHHHHHH---HHHHHHHHHH--------------
Confidence 88873 34666555443332 11 2288651 00111123533 7777777743
Q ss_pred CCCC-CceeEEeCCCCccchHHHH
Q 026345 202 ENFP-EKVAVQMNDTHPTLCIPDL 224 (240)
Q Consensus 202 ~~l~-~~~~ihlNDtHpalai~El 224 (240)
+.++ ++.+||+||-|.|++.+.+
T Consensus 128 ~~l~~~pDIIH~hDW~tal~p~~l 151 (245)
T PF08323_consen 128 KKLGWKPDIIHCHDWHTALAPLYL 151 (245)
T ss_dssp CTCT-S-SEEEEECGGGTTHHHHH
T ss_pred HhhCCCCCEEEecCchHHHHHHHh
Confidence 2333 5889999999999998665
No 11
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=96.16 E-value=0.031 Score=52.85 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=87.3
Q ss_pred ccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccCCCCcccccccccccCCeeEEEEeeeeecCCCCCCCeE
Q 026345 39 TELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTL 118 (240)
Q Consensus 39 ~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~v~ 118 (240)
-|..+..-.||||...++.-++++.+|..+.-+.-+|....- ....+.+ .. ..+.+++.+ ...
T Consensus 7 ~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~-~~~~~~~----------~~--~~~~~~~~~----~~~ 69 (476)
T cd03791 7 SEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILD-ELRGQLL----------VL--RLFGVPVGG----RPE 69 (476)
T ss_pred ccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhh-HhccCeE----------EE--EEEeeccCC----cee
Confidence 355555689999999999999999999999988877765321 1111110 00 111233333 367
Q ss_pred EEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCC
Q 026345 119 NLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEP 198 (240)
Q Consensus 119 ~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~ 198 (240)
.+++|...+ ++++++.++...+ .++......+...|.++ ..+..+|+.++++.+ +++ +
T Consensus 70 ~~~~~~~~~--~gv~~~~l~~~~~----~~~~~~~~~~~~~~~~~---------~~~~~~f~~~~~~~l-~~~----~-- 127 (476)
T cd03791 70 YVGVFELPV--DGVPVYFLDNPDY----FDRPGLYDDSGYDYEDN---------AERFALFSRAALELL-RRL----G-- 127 (476)
T ss_pred EEEEEEEEe--CCceEEEEcChHH----cCCCCCCCccCCCCccH---------HHHHHHHHHHHHHHH-Hhc----C--
Confidence 788998874 3366655543222 12222222344555432 233467888888754 322 1
Q ss_pred CCCCCCCCceeEEeCCCCccchHHHHHHHH
Q 026345 199 VNWENFPEKVAVQMNDTHPTLCIPDLIRIL 228 (240)
Q Consensus 199 ~~l~~l~~~~~ihlNDtHpalai~ElmR~L 228 (240)
.++.+||.||.|.+++...+-+..
T Consensus 128 ------~~pDviH~hd~~t~~~~~~l~~~~ 151 (476)
T cd03791 128 ------WKPDIIHCHDWHTGLVPALLKEKY 151 (476)
T ss_pred ------CCCcEEEECchHHHHHHHHHHHhh
Confidence 256899999999988877665543
No 12
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.06 E-value=0.15 Score=48.77 Aligned_cols=139 Identities=15% Similarity=0.091 Sum_probs=83.8
Q ss_pred ccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccCCCCcccccccccccCCeeEEEEeeeeecCCCCCCCeE
Q 026345 39 TELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTL 118 (240)
Q Consensus 39 ~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~v~ 118 (240)
.|-.+-.-.||||.-.++.-++++.+|.-+.-+.-+|....- .|.. ... ......+++.| ...
T Consensus 8 ~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~---~~~~---------~~~-~~~~~~~~~~~----~~~ 70 (473)
T TIGR02095 8 AEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIED---EVDD---------QVK-VVELVDLSVGP----RTL 70 (473)
T ss_pred eccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhh---hhcc---------CeE-EEEEEEEeecC----cee
Confidence 344455669999999999999999999999888777765321 1110 011 11222344444 367
Q ss_pred EEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCC
Q 026345 119 NLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEP 198 (240)
Q Consensus 119 ~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~ 198 (240)
++++|...+ ++++++.+....+. + |. ..+|++|... .+.+-.+|+.|+++.+ ++. +
T Consensus 71 ~~~~~~~~~--~~v~~~~i~~~~~~----~----r~--~~~y~~~~~d-----~~~r~~~f~~a~~~~~-~~~----~-- 126 (473)
T TIGR02095 71 YVKVFEGVV--EGVPVYFIDNPSLF----D----RP--GGIYGDDYPD-----NAERFAFFSRAAAELL-SGL----G-- 126 (473)
T ss_pred EEEEEEEEE--CCceEEEEECHHHc----C----CC--CCCCCCCCCC-----HHHHHHHHHHHHHHHH-Hhc----C--
Confidence 889999874 23666544332221 1 11 3488842111 2223467888888754 332 1
Q ss_pred CCCCCCCCceeEEeCCCCccchHHHH
Q 026345 199 VNWENFPEKVAVQMNDTHPTLCIPDL 224 (240)
Q Consensus 199 ~~l~~l~~~~~ihlNDtHpalai~El 224 (240)
.++.+||.||-|++++..-+
T Consensus 127 ------~~~DiiH~hdw~~~~~~~~l 146 (473)
T TIGR02095 127 ------WQPDVVHAHDWHTALVPALL 146 (473)
T ss_pred ------CCCCEEEECCcHHHHHHHHH
Confidence 14679999999999877654
No 13
>PRK00654 glgA glycogen synthase; Provisional
Probab=88.32 E-value=1.7 Score=41.68 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=30.1
Q ss_pred cccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCc
Q 026345 40 ELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTN 76 (240)
Q Consensus 40 E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~ 76 (240)
|-.+-.-.||||.-.+..-++++.+|.-+.-+.=+|.
T Consensus 9 e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~ 45 (466)
T PRK00654 9 ECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYP 45 (466)
T ss_pred ccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 4445555889999999999999999998887776554
No 14
>PRK14098 glycogen synthase; Provisional
Probab=86.58 E-value=3.7 Score=40.17 Aligned_cols=148 Identities=11% Similarity=0.106 Sum_probs=76.6
Q ss_pred hcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccCCCCcccccccccccCCeeEEEEeeeeecCCCCCCC
Q 026345 37 LLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKT 116 (240)
Q Consensus 37 ~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~ 116 (240)
...|-.+=.=.||||--++..=++++.+|.-+.-+-=+|+ -+....|+.... ..+ ..+++++.+ .
T Consensus 11 v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~--~~~~~~~~~~~~-------~~~--~~~~~~~~~----~ 75 (489)
T PRK14098 11 VSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYG--TINDRKFRLHDV-------LRL--SDIEVPLKE----K 75 (489)
T ss_pred EeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCC--chhhhhhccccc-------eEE--EEEEEeecC----e
Confidence 3445555566799999999999999999987765544443 233222221111 111 112333332 1
Q ss_pred eEEEEEEEeeecCcccccccCCCcchHHHhhhhhcccccccccccCCc---hhhhhhhhhhhhhhhccchHHHHHHHHHh
Q 026345 117 TLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDE---YIARKTLRLKQQYTLCSASVQDIIVRYEG 193 (240)
Q Consensus 117 v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~---~~~GkelRLkQEyfLg~ggvq~ilr~~~~ 193 (240)
+...+++.+.....++.++.++...|. .+. .+|++++ .+.---.|+ .||+.|.++.+ +..
T Consensus 76 ~~~~~~~~~~~~~~~v~~~~~~~~~~f----~r~-------~~y~~~~~g~~~~d~~~rf---~~f~~a~l~~~-~~~-- 138 (489)
T PRK14098 76 TDLLHVKVTALPSSKIQTYFLYNEKYF----KRN-------GLFTDMSLGGDLKGSAEKV---IFFNVGVLETL-QRL-- 138 (489)
T ss_pred eEEEEEEEecccCCCceEEEEeCHHHc----CCC-------CcCCCCccCCCCCcHHHHH---HHHHHHHHHHH-Hhc--
Confidence 334455444311123445444433332 121 3565310 010012353 47777777643 221
Q ss_pred hcCCCCCCCCCCCceeEEeCCCCccchHHHHHHH
Q 026345 194 RLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRI 227 (240)
Q Consensus 194 ~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~ 227 (240)
. .++.+||.||-|++++.+ +++.
T Consensus 139 ------~----~~pDiiH~hdw~t~l~~~-~l~~ 161 (489)
T PRK14098 139 ------G----WKPDIIHCHDWYAGLVPL-LLKT 161 (489)
T ss_pred ------C----CCCCEEEecCcHHHHHHH-HHHH
Confidence 1 156899999999999876 4543
No 15
>PRK14099 glycogen synthase; Provisional
Probab=60.26 E-value=46 Score=32.59 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=30.9
Q ss_pred hcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCc
Q 026345 37 LLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTN 76 (240)
Q Consensus 37 ~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~ 76 (240)
...|-.+=.=.||||--++..=++++.+|.-+.-+-=+|+
T Consensus 9 v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~ 48 (485)
T PRK14099 9 VASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYP 48 (485)
T ss_pred EEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 3445566667899999999999999999987766555553
No 16
>PLN02939 transferase, transferring glycosyl groups
Probab=51.95 E-value=89 Score=34.07 Aligned_cols=147 Identities=12% Similarity=0.199 Sum_probs=82.9
Q ss_pred cCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccC-CCCcccccccccccCCeeEEEEee
Q 026345 27 HGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLN-NSSLKMVRKKLQKVGGENVMDVAY 105 (240)
Q Consensus 27 ~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~-~~~We~~~~~~~~~~~~~v~av~y 105 (240)
.|+.| -.+.-|-.+=.=.||||--++..=++++.+|.-+.-+-=.|.. +. ..-+.. ... ..+.
T Consensus 480 ~~mkI---LfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~--i~~~~~~~~-----~~~--~~~~---- 543 (977)
T PLN02939 480 SGLHI---VHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDC--MQYDQIRNL-----KVL--DVVV---- 543 (977)
T ss_pred CCCEE---EEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcc--cChhhhhcc-----ccc--ceEE----
Confidence 45555 3455566555669999999999999999999988776666642 22 100000 000 1111
Q ss_pred eeecCCCCCCCeEEEEEEEeeecCcccccccCCCc---chHHHhhhhhcccccccccccC-Cchhhhhhhhhhhhhhhcc
Q 026345 106 DVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTG---DHAKAYAAITNVEKICYVLYPG-DEYIARKTLRLKQQYTLCS 181 (240)
Q Consensus 106 D~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~g---d~~~a~~n~~~~r~IT~~LYp~-D~~~~GkelRLkQEyfLg~ 181 (240)
.+++.| .....|+|...+. +++++.+... .|+ .| ..+|+. |+. .|+ .||+-
T Consensus 544 ~~~~~g----~~~~~~v~~~~~~--GV~vyfId~~~~~~fF--------~R---~~iYg~~Dn~-----~RF---~~Fsr 598 (977)
T PLN02939 544 ESYFDG----NLFKNKIWTGTVE--GLPVYFIEPQHPSKFF--------WR---AQYYGEHDDF-----KRF---SYFSR 598 (977)
T ss_pred EEeecC----ceeEEEEEEEEEC--CeeEEEEecCCchhcc--------CC---CCCCCCccHH-----HHH---HHHHH
Confidence 123223 2345789988742 3555433311 121 11 146743 332 253 37777
Q ss_pred chHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHH
Q 026345 182 ASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRI 227 (240)
Q Consensus 182 ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~ 227 (240)
|.+..+ +.. + ..+.+||.||-|.+++.|=+.+.
T Consensus 599 AaLe~~-~~~----~--------~~PDIIH~HDW~TaLV~pll~~~ 631 (977)
T PLN02939 599 AALELL-YQS----G--------KKPDIIHCHDWQTAFVAPLYWDL 631 (977)
T ss_pred HHHHHH-Hhc----C--------CCCCEEEECCccHHHHHHHHHHH
Confidence 777643 222 1 14679999999999987766544
No 17
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=35.26 E-value=44 Score=25.63 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=27.9
Q ss_pred hhhccchHHHHHHHHHhhcCCCCCCCCCC-CceeEEeCCCCccchH
Q 026345 177 YTLCSASVQDIIVRYEGRLGEPVNWENFP-EKVAVQMNDTHPTLCI 221 (240)
Q Consensus 177 yfLg~ggvq~ilr~~~~~~g~~~~l~~l~-~~~~ihlNDtHpalai 221 (240)
.|+|+|-+|.+++....... ... .+.-|++||.+|+...
T Consensus 28 Ll~G~gD~Rhvl~Tl~~~~~------~~~~~~l~~~l~D~~~~vlA 67 (100)
T PF14737_consen 28 LLLGCGDLRHVLKTLASLPR------SYDGRKLHFTLNDINPEVLA 67 (100)
T ss_pred EEecCccHHHHHHHHHhccc------CcccceeEEEEecCcHHHHH
Confidence 57889999998888753321 112 2679999999998764
No 18
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=28.03 E-value=45 Score=28.53 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=34.8
Q ss_pred CCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeee
Q 026345 29 KALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMD 72 (240)
Q Consensus 29 ~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~G 72 (240)
+.++++.|.+++||+=+.++..+. ....+.++.+|+|.+.+.
T Consensus 47 ~~~n~E~i~~l~PDlIi~~~~~~~--~~~~~~l~~~gipvv~~~ 88 (235)
T cd01149 47 RQLSAEGVLSLKPTLVIASDEAGP--PEALDQLRAAGVPVVTVP 88 (235)
T ss_pred cCcCHHHhhccCCCEEEEcCCCCC--HHHHHHHHHcCCeEEEec
Confidence 568999999999999999887653 256789999999998654
No 19
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=22.61 E-value=67 Score=24.85 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCceeEEeCCCC---ccchHHHHHHHHHHhcCCChhhcC
Q 026345 205 PEKVAVQMNDTH---PTLCIPDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 205 ~~~~~ihlNDtH---palai~ElmR~L~de~gl~wd~A~ 240 (240)
++++.||.+.|+ +++++..+|+ ..++++++|+
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~----~~~~~~~~a~ 115 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMK----TLGLSLREAY 115 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHH----HcCCCHHHHH
Confidence 467999999998 3455555444 4588888874
No 20
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.47 E-value=1.1e+02 Score=24.99 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=40.0
Q ss_pred CChhHHHHHHH-cC--CCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeee
Q 026345 16 LSPHRKALILV-HG--KALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMD 72 (240)
Q Consensus 16 ~~~~~~~~~~~-~~--~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~G 72 (240)
..|..+.+... -| ...|++.|..+.||.-+++++.+ .....+.+.++|+|.+-+.
T Consensus 42 ~~p~~~~~~~~~~g~~~~~n~E~ll~l~PDlii~~~~~~--~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 42 NTPAVKERIDIQVGPTGSLNVELIVALKPDLVILYGGFQ--AQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCHHHHHHHHHhcCCCCCCCHHHHhccCCCEEEEecCCC--chhHHHHHHHcCCCEEEeC
Confidence 35666665542 34 45889999999999998876543 2248899999999998654
No 21
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=22.04 E-value=80 Score=30.88 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=42.4
Q ss_pred hHHHHHHHcCCCCChhhhhc--ccccCCCCCCCchhhHH---HhHHhhhcCCCCeeeeecCC
Q 026345 19 HRKALILVHGKALFPSLLLL--TELDAALGNGGLERLAS---CFLDSLATLNYPAWDMDLDT 75 (240)
Q Consensus 19 ~~~~~~~~~~~~~~~~~i~~--~E~d~~LgnGGLGrLAg---d~LdS~a~LglP~~G~GL~Y 75 (240)
.||+.+.++|..++ .|+. ...|+.+|.++=-+.-. ..|+.+|..|||+++|-..=
T Consensus 47 ~~k~~ie~~GL~~~--vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~GI~vicYNFMP 106 (394)
T TIGR00695 47 KRKEYIESAGLHWS--VVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQCGIKTVCYNFMP 106 (394)
T ss_pred HHHHHHHHcCCeEE--EEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 58999999997773 4433 23489999998877766 56778899999999987654
No 22
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.39 E-value=89 Score=25.45 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=32.8
Q ss_pred CCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeee
Q 026345 29 KALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMD 72 (240)
Q Consensus 29 ~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~G 72 (240)
..+|++.|.+++||.-+++++-. .+..+.++..|+|.+-+.
T Consensus 49 ~~~n~E~l~~l~PDlii~~~~~~---~~~~~~l~~~gi~v~~~~ 89 (195)
T cd01143 49 SNPNVEKIVALKPDLVIVSSSSL---AELLEKLKDAGIPVVVLP 89 (195)
T ss_pred CCCCHHHHhccCCCEEEEcCCcC---HHHHHHHHHcCCcEEEeC
Confidence 46899999999999998876543 346788999999987643
Done!