Query 026345
Match_columns 240
No_of_seqs 158 out of 917
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ygp_A Yeast glycogen phosphor 100.0 1.1E-73 3.7E-78 575.8 12.8 214 21-240 139-393 (879)
2 1l5w_A Maltodextrin phosphoryl 100.0 5.2E-70 1.8E-74 547.9 13.2 216 19-240 86-333 (796)
3 2gj4_A Glycogen phosphorylase, 100.0 5.8E-70 2E-74 549.0 13.4 219 19-240 96-354 (824)
4 2c4m_A Glycogen phosphorylase; 100.0 5.6E-69 1.9E-73 540.4 14.5 216 19-240 87-323 (796)
5 3vue_A GBSS-I, granule-bound s 80.1 7.7 0.00026 36.7 9.4 145 46-224 24-171 (536)
6 2k84_A P9; HOST-virus interact 32.8 12 0.00042 22.7 0.5 13 159-178 1-13 (30)
7 3psh_A Protein HI_1472; substr 18.3 48 0.0016 28.4 1.8 42 29-73 73-114 (326)
8 3md9_A Hemin-binding periplasm 16.1 50 0.0017 27.1 1.3 42 29-72 48-89 (255)
9 4hn9_A Iron complex transport 16.0 43 0.0015 29.1 0.9 40 29-72 105-144 (335)
10 3s4e_A Dual specificity protei 15.4 87 0.003 23.5 2.5 31 206-240 82-115 (144)
No 1
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=100.00 E-value=1.1e-73 Score=575.81 Aligned_cols=214 Identities=45% Similarity=0.793 Sum_probs=200.9
Q ss_pred HHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC-C
Q 026345 21 KALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN-N 82 (240)
Q Consensus 21 ~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~-~ 82 (240)
++.|...|.+| ++|+++|+||+|||||||||||||||||||||+|++||||||+||| |. +
T Consensus 139 ~~al~~lg~~l--~~~~~~E~da~LGnGGLGrLAacfLdS~AtLglP~~GyGlrY~~G~F~Q~i~dG~Q~E~pd~Wl~~g 216 (879)
T 1ygp_A 139 KGALDELGFKL--EDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSG 216 (879)
T ss_dssp HHHHHHHTCCH--HHHHTTCCCBCSCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCTTTTC
T ss_pred HHHHHHcCCCH--HHHHhcCCCCCcCCCcHHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEeeCCeeEEeccchhccC
Confidence 78899999888 8999999999999999999999999999999999999999999999 44 7
Q ss_pred CCcccccc----------cc-------------cccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCC
Q 026345 83 SSLKMVRK----------KL-------------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNT 139 (240)
Q Consensus 83 ~~We~~~~----------~~-------------~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~ 139 (240)
||||++|+ .+ .|.+++.|+|+|||+||+||+|+++|+||||+|+ +++.|+|..||+
T Consensus 217 ~pwe~~r~~~~~~V~f~G~v~~~~~~~~G~~~~~w~~~~~v~av~yD~Pi~Gy~~~~~n~lRLW~a~-~~~~f~l~~fn~ 295 (879)
T 1ygp_A 217 NPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQAR-PTTEFDLNKFNN 295 (879)
T ss_dssp CTTCEEEEEEEEEEEESCEEECC----CTTSCCEEECSEEEEEEEEEEEEECSSCCCEEEEEEEEEE-ESCSCCHHHHHT
T ss_pred CcccccCCCceEEEeeCCEEeeccccCCCcceeEeeCCcEEEEEEccccccCcCCCceEEEEEEEec-cCcccchhhccC
Confidence 88876554 01 3777778999999999999999999999999999 677899999999
Q ss_pred cchHHHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccc
Q 026345 140 GDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTL 219 (240)
Q Consensus 140 gd~~~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpal 219 (240)
|||.+|+++++.+|+||++|||+|++++||+|||||||||||||+|||||+|++.++ ++++|+++++||||||||||
T Consensus 296 gdy~~a~~~~~~~e~IT~vLYp~D~~~~GkeLRLkQEyfl~sa~lqdilr~~~~~~~---~l~~l~~~~~ihlNDtHpal 372 (879)
T 1ygp_A 296 GDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFKKSKR---PWTEFPDQVAIQLNDTHPTL 372 (879)
T ss_dssp TCHHHHTHHHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CGGGHHHHEEEEEESSTTTH
T ss_pred ccHhHhhhChHhhhchhccCCCCCCCccchhhheehhhhhhhhHHHHHHHHHHHhCC---ChhhcCCceEEEccCCcHHH
Confidence 999999999999999999999999999999999999999999999999999998875 69999999999999999999
Q ss_pred hHHHHHHHHHHhcCCChhhcC
Q 026345 220 CIPDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 220 ai~ElmR~L~de~gl~wd~A~ 240 (240)
|||||||+|||++|++||+||
T Consensus 373 ai~ELmR~L~d~~gl~wd~Aw 393 (879)
T 1ygp_A 373 AIVELQRVLVDLEKLDWHEAW 393 (879)
T ss_dssp HHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHH
Confidence 999999999999999999996
No 2
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=100.00 E-value=5.2e-70 Score=547.87 Aligned_cols=216 Identities=37% Similarity=0.569 Sum_probs=201.2
Q ss_pred hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC
Q 026345 19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN 81 (240)
Q Consensus 19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~ 81 (240)
.-++.|...|..| ++|+++|+|++|||||||||||||||||||||+|++||||||+||| +.
T Consensus 86 ~~~~~l~~~g~~l--~~~~~~E~d~~LgnGGLGrLAacfldS~a~l~~p~~G~Gi~Y~~G~F~Q~i~dG~Q~E~~d~wl~ 163 (796)
T 1l5w_A 86 DVQDSLKAYDINL--TDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHR 163 (796)
T ss_dssp HHHHHHHTTTCCH--HHHHTTCCCCCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCCCG
T ss_pred HHHHHHHHcCCCH--HHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeeeecCCceeEEecCCeeEEecCcccc
Confidence 4578899999887 8999999999999999999999999999999999999999999999 23
Q ss_pred -CCCccccccc----------c----cccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHh
Q 026345 82 -NSSLKMVRKK----------L----QKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAY 146 (240)
Q Consensus 82 -~~~We~~~~~----------~----~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~ 146 (240)
++|||..++. + .|.+++.|+|+|||+||+||+|+++|+||||+|+ +++.|+|..||+|||.+|+
T Consensus 164 ~~~pwe~~r~~~~~~V~f~g~~~~~~~w~~~~~v~av~yd~pi~Gy~~~~~n~lrlW~a~-~~~~f~l~~fn~gdy~~a~ 242 (796)
T 1l5w_A 164 SNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFLRAE 242 (796)
T ss_dssp GGCTTCEECGGGCEEEEESCEECTTSCEECSEEEEEEEEEEEEECSSSCCEEEEEEEEEE-CSSCCCHHHHHTTCTTGGG
T ss_pred CCCcceeecCCcEEEEeeCCEEeecceecCCceEEEEEecccccCCCCCceEEEEEEEec-cCcccChhhcCCccHhhhh
Confidence 6677766651 1 3899999999999999999999999999999999 6778999999999999999
Q ss_pred hhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHH
Q 026345 147 AAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIR 226 (240)
Q Consensus 147 ~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR 226 (240)
++++.+|+||++|||+|++++||++|||||||||+||+|+|+|+|++.++ +++.|+++++||||||||||+++||||
T Consensus 243 ~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~ilr~~~~~~~---~~~~l~~p~viHlNDtHpal~i~ElmR 319 (796)
T 1l5w_A 243 QQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGR---KLHELADYEVIQLNDTHPTIAIPELLR 319 (796)
T ss_dssp HHHHHHHGGGTCSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CGGGHHHHEEEEEESSTTTTHHHHHHH
T ss_pred hchHhHhhhhhcCcCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ChhhcCCccEEEecCCccHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999988765 688899999999999999999999999
Q ss_pred HHHHhcCCChhhcC
Q 026345 227 ILMDVKGLSWNDII 240 (240)
Q Consensus 227 ~L~de~gl~wd~A~ 240 (240)
+|+|++|++|++|+
T Consensus 320 ~l~d~~~~~~d~A~ 333 (796)
T 1l5w_A 320 VLIDEHQMSWDDAW 333 (796)
T ss_dssp HHHHHSCCCHHHHH
T ss_pred HHhhhcCCCHHHHH
Confidence 99999999999985
No 3
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=100.00 E-value=5.8e-70 Score=549.02 Aligned_cols=219 Identities=40% Similarity=0.710 Sum_probs=189.7
Q ss_pred hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCcccc-----------------cC
Q 026345 19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMAC-----------------LN 81 (240)
Q Consensus 19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gy-----------------l~ 81 (240)
.-++.|...|..| ++|+++|+||+|||||||||||||||||||||+|++||||||+||| |.
T Consensus 96 ~~~~~l~~~g~~l--~~i~~~E~d~~LgnGGLGrLAacfldS~AtL~~P~~G~Gi~Y~~G~F~Q~i~dG~Q~E~~d~Wl~ 173 (824)
T 2gj4_A 96 ACDEATYQLGLDM--EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLR 173 (824)
T ss_dssp HHHHHHHHTTCCH--HHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSCEEEEETTEEEEECCCTTT
T ss_pred HHHHHHHHhCCCH--HHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeeEEeeCCEEEEcCccccc
Confidence 4578899999888 8999999999999999999999999999999999999999999999 34
Q ss_pred -CCCccccccc----------c-------cccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchH
Q 026345 82 -NSSLKMVRKK----------L-------QKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHA 143 (240)
Q Consensus 82 -~~~We~~~~~----------~-------~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~ 143 (240)
+||||++|+. + .|.+.+.|+|+|||+|||||+|++||+||||+|+ +.+.||+..||.|+|.
T Consensus 174 ~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~w~~~~~v~av~yD~pi~Gy~~~~vn~lRlW~a~-~~~~f~~~~fn~G~~~ 252 (824)
T 2gj4_A 174 YGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFNVGGYI 252 (824)
T ss_dssp TCCTTCEECGGGCEEEEESCEEEECSSSEEEESCEEEEEEEEEEEEECSSSSCEEEEEEEEEE-CCC----------CHH
T ss_pred cCCcccccCCCceEEEEeCCEEEecCCCceecccceEEEeeccCCcCCCCCCceEEEEEEEee-cCcccchhhccCccHH
Confidence 7888877651 1 5777789999999999999999999999999999 7888999999999999
Q ss_pred HHhhhhhcccccccccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhc-CC----CCCCCCCCCceeEEeCCCCcc
Q 026345 144 KAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRL-GE----PVNWENFPEKVAVQMNDTHPT 218 (240)
Q Consensus 144 ~a~~n~~~~r~IT~~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~-g~----~~~l~~l~~~~~ihlNDtHpa 218 (240)
.|+..++.+++||++|||+|++++||++||||||||||||+|||||+|++.+ |. ..+++.|++|++|||||||||
T Consensus 253 ~a~~d~~~~enIt~~LYp~D~~~~Gk~lRL~Qeyf~~sa~lqdilr~~~~~~~g~~~~~~~~~~~~~~p~viHlNDtHpa 332 (824)
T 2gj4_A 253 QAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPS 332 (824)
T ss_dssp HHHHTHHHHHGGGSBCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-----------CGGGHHHHEEEEEESSTTT
T ss_pred HHHhcccchhhcCcCCCCCCCccchHhHhhhhhhhhhhhHHHHHHHHHHHhccccccccccchhhcCCCcEEEccCCchH
Confidence 9999999999999999999999999999999999999999999999998763 21 026888899999999999999
Q ss_pred chHHHHHHHHHHhcCCChhhcC
Q 026345 219 LCIPDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 219 lai~ElmR~L~de~gl~wd~A~ 240 (240)
|+++||||+|+|++|++|++|+
T Consensus 333 l~i~ElmR~l~d~~~l~~d~A~ 354 (824)
T 2gj4_A 333 LAIPELMRVLVDLERLDWDKAW 354 (824)
T ss_dssp THHHHHHHHHHHTSCCCHHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999999999999999984
No 4
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=100.00 E-value=5.6e-69 Score=540.39 Aligned_cols=216 Identities=38% Similarity=0.604 Sum_probs=198.5
Q ss_pred hHHHHHHHcCCCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeecCCccccc-----------------C
Q 026345 19 HRKALILVHGKALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACL-----------------N 81 (240)
Q Consensus 19 ~~~~~~~~~~~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl-----------------~ 81 (240)
.-++.|...|..| ++|+++|+|++|||||||||||||||||||||+|++||||||+|||+ .
T Consensus 87 ~~~~~l~~~g~~l--~~~~~~E~d~~LgnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~~d~wl~ 164 (796)
T 2c4m_A 87 EAAAATRELGHEL--TDILEIENDAALGNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWRE 164 (796)
T ss_dssp HHHHHHHHTTCCH--HHHHTTCCCBCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCSSS
T ss_pred HHHHHHHHcCCCH--HHHHhhccccccCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeEEEeeCCEEEeeCCcccc
Confidence 4578899999988 89999999999999999999999999999999999999999999992 2
Q ss_pred -CCCccccccc---ccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEeeecCcccccccCCCcchHHHhhhhhccccccc
Q 026345 82 -NSSLKMVRKK---LQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICY 157 (240)
Q Consensus 82 -~~~We~~~~~---~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~ 157 (240)
++|||..++. .+..++..|+|+|||+||+||+|+++|+||||+|+ +++.|+|..||+|||.+|+++++.+|+||+
T Consensus 165 ~g~pwe~~r~~~~~~V~f~g~~v~a~~yd~pi~gy~~~~~n~lrlW~a~-~~~~f~l~~fn~gdy~~a~~~~~~~~~It~ 243 (796)
T 2c4m_A 165 EEYPFTIRRASDQLVVCFDDMKTRAIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTDAIIERERVSDICR 243 (796)
T ss_dssp SCCTTSEECGGGCEEEEETTEEEEEEEEEEEECCTTCCCCEEEEEEEEE-ESSSSCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCceeEecCCcEEEEEeCCEEEEEEEEeccccCcCCCceEEEEEEecc-cccccchhhccCcchhhhhhchHhhhchhh
Confidence 4555544431 12347889999999999999999999999999999 677899989999999999999999999999
Q ss_pred ccccCCchhhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCCCCCCCceeEEeCCCCccchHHHHHHHHHHhcCCChh
Q 026345 158 VLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237 (240)
Q Consensus 158 ~LYp~D~~~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~de~gl~wd 237 (240)
+|||+|++++||++|||||||||+||+|+|+|+|++.++ +++.|+++++||||||||||+++||||+|+|++|++|+
T Consensus 244 ~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~ilr~~~~~~~---~l~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d 320 (796)
T 2c4m_A 244 VLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLAHHK---DLSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWE 320 (796)
T ss_dssp SSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSTTHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHH
T ss_pred cCcCCCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHhCC---ChhhcCCCeEEEeCCChHHhHHHHHHHHHhhhcCCCHH
Confidence 999999999999999999999999999999999988875 69999999999999999999999999999999999999
Q ss_pred hcC
Q 026345 238 DII 240 (240)
Q Consensus 238 ~A~ 240 (240)
+|+
T Consensus 321 ~A~ 323 (796)
T 2c4m_A 321 ESW 323 (796)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=80.06 E-value=7.7 Score=36.75 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=68.7
Q ss_pred CCCCchhhHHHhHHhhhcCCCCeeeeecCCcccccCCCCcccccccccccCCeeEEEEeeeeecCCCCCCCeEEEEEEEe
Q 026345 46 GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWST 125 (240)
Q Consensus 46 gnGGLGrLAgd~LdS~a~LglP~~G~GL~Y~~Gyl~~~~We~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~v~~lRLW~a 125 (240)
=.||||.-++..=++++.+|.-+.-+-=.|.. + .+.|+.. +...+++.+ ....+++|..
T Consensus 24 K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~--~-~~~~~~~--------------~~~~~~~~~----~~~~~~~~~~ 82 (536)
T 3vue_A 24 KTGGLGDVLGGLPPAMAANGHRVMVISPRYDQ--Y-KDAWDTS--------------VVAEIKVAD----RYERVRFFHC 82 (536)
T ss_dssp CSSHHHHHHHHHHHHHHTTTCEEEEEEECCSC--C-TTCEEEE--------------EEEEEEETT----EEEEEEEEEC
T ss_pred ccCcHHHHHHHHHHHHHHcCCeEEEEecCchh--h-hhhcccc--------------eEEEEEecC----ceEEEEEEEE
Confidence 37999999999999999999988765544431 2 1222211 112344444 2456777777
Q ss_pred eecCcccccccCCCcchHHHhhhhhcccccccccccCCch--hhhhhhhhhhhhhhccchHHHHHHHHHhhcCCCCCC-C
Q 026345 126 KVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEY--IARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNW-E 202 (240)
Q Consensus 126 ~v~~~~~~l~~f~~gd~~~a~~n~~~~r~IT~~LYp~D~~--~~GkelRLkQEyfLg~ggvq~ilr~~~~~~g~~~~l-~ 202 (240)
.. ++++++.++...|. ++... .-...+|++++. +.--..|. .||+-+.++. ++.+... .. ..+ .
T Consensus 83 ~~--~gv~~y~id~~~~~----~r~~~-~~~~~~Y~~~~~~~~~d~~~rf---~~f~~a~l~~-~~~l~~~-~~-~~~~~ 149 (536)
T 3vue_A 83 YK--RGVDRVFIDHPSFL----EKVWG-KTGEKIYGPDTGVDYKDNQMRF---SLLCQAALEA-PRILNLN-NN-PYFKG 149 (536)
T ss_dssp EE--TTEEEEEEECTTTT----CC-------------------CHHHHHH---HHHHHHHHHH-HHHCCCC-CC-TTCCS
T ss_pred EE--CCceEEEecChhhh----ccccc-cCCCcccCCCccCccchHHHHH---HHHHHHHHHH-HHHhccc-cc-hhhhc
Confidence 62 23444433332221 11111 112346655431 10011232 3555555553 3333100 00 001 1
Q ss_pred CCCCceeEEeCCCCccchHHHH
Q 026345 203 NFPEKVAVQMNDTHPTLCIPDL 224 (240)
Q Consensus 203 ~l~~~~~ihlNDtHpalai~El 224 (240)
....++++|.||-|.+++.+-+
T Consensus 150 ~~~~ddIiH~hDW~t~l~~~~l 171 (536)
T 3vue_A 150 TYGEDVVFVCNDWHTGPLASYL 171 (536)
T ss_dssp CCCSCEEEEEESGGGSTHHHHH
T ss_pred cCCCCEEEEECcchHHHHHHHH
Confidence 2335789999999999987643
No 6
>2k84_A P9; HOST-virus interaction, metal-binding, virion, zinc, zinc-finger; NMR {Synthetic}
Probab=32.82 E-value=12 Score=22.66 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=10.5
Q ss_pred cccCCchhhhhhhhhhhhhh
Q 026345 159 LYPGDEYIARKTLRLKQQYT 178 (240)
Q Consensus 159 LYp~D~~~~GkelRLkQEyf 178 (240)
|||+=+ .+||||=
T Consensus 1 LYPDLs-------~~kqEY~ 13 (30)
T 2k84_A 1 LYPDLS-------EIKKEYN 13 (30)
T ss_dssp CCCCSC-------SSSHHHH
T ss_pred CCccHH-------HHHHHHh
Confidence 788887 7899984
No 7
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=18.32 E-value=48 Score=28.39 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=34.4
Q ss_pred CCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeeec
Q 026345 29 KALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMDL 73 (240)
Q Consensus 29 ~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~GL 73 (240)
..+|++.|.+++||+=+.++.. .....+.++.+|+|.+.+..
T Consensus 73 ~~~n~E~i~~l~PDlIi~~~~~---~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 73 NSVNIESLLALKPDVVFVTNYA---PSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp SCBCHHHHHHTCCSEEEEETTC---CHHHHHHHHTTTCCEEEECS
T ss_pred CCCCHHHHHccCCCEEEEeCCC---ChHHHHHHHHcCCCEEEEec
Confidence 4688999999999998876542 35678999999999998754
No 8
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=16.13 E-value=50 Score=27.13 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=33.9
Q ss_pred CCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeee
Q 026345 29 KALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMD 72 (240)
Q Consensus 29 ~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~G 72 (240)
..+|++.|.+++||+=+.++.-+ .....+.++..|+|.+.+.
T Consensus 48 ~~~n~E~i~~l~PDlIi~~~~~~--~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 48 RTLNAEGILAMKPTMLLVSELAQ--PSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp TSCCHHHHHTTCCSEEEEETTCS--CHHHHHHHHHTTCEEEEEC
T ss_pred CCCCHHHHHccCCCEEEEcCCcC--chhHHHHHHHcCCcEEEeC
Confidence 46789999999999999877643 2356788999999999764
No 9
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=16.01 E-value=43 Score=29.09 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=33.6
Q ss_pred CCCChhhhhcccccCCCCCCCchhhHHHhHHhhhcCCCCeeeee
Q 026345 29 KALFPSLLLLTELDAALGNGGLERLASCFLDSLATLNYPAWDMD 72 (240)
Q Consensus 29 ~~~~~~~i~~~E~d~~LgnGGLGrLAgd~LdS~a~LglP~~G~G 72 (240)
..+|++.|.+++||+=+.+++ .....+.++.+|+|.+.+.
T Consensus 105 ~~~n~E~i~al~PDLIi~~~~----~~~~~~~L~~~gipvv~~~ 144 (335)
T 4hn9_A 105 KEFNTEACVAATPDVVFLPMK----LKKTADTLESLGIKAVVVN 144 (335)
T ss_dssp TEECHHHHHHTCCSEEEEEGG----GHHHHHHHHHTTCCEEEEC
T ss_pred CCCCHHHHHhcCCCEEEEeCc----chhHHHHHHHcCCCEEEEc
Confidence 467899999999999998764 3567889999999999865
No 10
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=15.44 E-value=87 Score=23.51 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=23.7
Q ss_pred CceeEEeCCCC---ccchHHHHHHHHHHhcCCChhhcC
Q 026345 206 EKVAVQMNDTH---PTLCIPDLIRILMDVKGLSWNDII 240 (240)
Q Consensus 206 ~~~~ihlNDtH---palai~ElmR~L~de~gl~wd~A~ 240 (240)
.++.||..-|. +++++.-||+ .+|+++++|+
T Consensus 82 ~~VlVHC~~G~sRS~~~v~ayLm~----~~~~~~~~A~ 115 (144)
T 3s4e_A 82 GVVLVHSNAGVSRAAAIVIGFLMN----SEQTSFTSAF 115 (144)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH----HHCCCHHHHH
T ss_pred CeEEEEcCCCCchHHHHHHHHHHH----HcCCCHHHHH
Confidence 46899999998 6666666655 4699999884
Done!