RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026345
(240 letters)
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 180 bits (457), Expect = 1e-52
Identities = 92/244 (37%), Positives = 124/244 (50%), Gaps = 45/244 (18%)
Query: 36 LLLTELDAALGNGGLERLASCFLDSLATLNYPA--------------------------- 68
+L E DA LGNGGL RLA+CF+DS+AT PA
Sbjct: 149 VLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDY 208
Query: 69 WDMDLDTNMACLNNSSL--------------KMVRKKLQKVGGENVMDVAYDVPIPGYKT 114
W + N + K Q +GGE V+ VAYD P+PG+KT
Sbjct: 209 WLNSGNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKT 268
Query: 115 KTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLK 174
NLRLW + +FDL+ FN GD+ + A E I VLYP D + K LRLK
Sbjct: 269 SNVNNLRLWQAR-PTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLK 327
Query: 175 QQYTLCSASVQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGL 234
QQY C+AS+ DI+ R++ W FP++VA+Q+NDTHPTL I +L R+L+D++ L
Sbjct: 328 QQYFWCAASLHDILRRFKKSKR---PWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKL 384
Query: 235 SWND 238
W++
Sbjct: 385 DWHE 388
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 155 bits (394), Expect = 3e-44
Identities = 82/235 (34%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 36 LLLTELDAALGNGGLERLASCFLDSLATLNYPAW-------------------------D 70
LL E+D ALGNGGL RLA+CFLDS+AT+ A D
Sbjct: 101 LLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDD 160
Query: 71 MDLDTNMACLNNSSLK-------MVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLW 123
+N +L V K + + A+D+P+ GY+ LRLW
Sbjct: 161 WHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLW 220
Query: 124 STKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSAS 183
A FDL FN GD +A N EK+ VLYP D K LRL QQY C+ S
Sbjct: 221 QATHA-HPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACS 279
Query: 184 VQDIIVRYEGRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
V DI+ R+ + +Q+NDTHPT+ IP+L+R+L+D +SW+D
Sbjct: 280 VADILRRHHLAGR---KLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDD 331
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 154 bits (389), Expect = 2e-43
Identities = 87/243 (35%), Positives = 124/243 (51%), Gaps = 41/243 (16%)
Query: 36 LLLTELDAALGNGGLERLASCFLDSLATLNYPA--------------------------- 68
L E DA LGNGGL RLA+CFLDS+ATL A
Sbjct: 111 LEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADD 170
Query: 69 WDMDLDTNMACLNNSSL--------KMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNL 120
W + +L + + + V + V+ + YD P+PGY+ +
Sbjct: 171 WLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTM 230
Query: 121 RLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLC 180
RLWS K A DF+L FN G + +A E I VLYP D + K LRLKQ+Y +
Sbjct: 231 RLWSAK-APNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVV 289
Query: 181 SASVQDIIVRYE-----GRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLS 235
+A++QDII R++ R N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L
Sbjct: 290 AATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLD 349
Query: 236 WND 238
W+
Sbjct: 350 WDK 352
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 233
Score = 34.0 bits (78), Expect = 0.009
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 117 TLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNVE 153
+ + V E+ DLH++ +H ++Y AI+ +
Sbjct: 13 RIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIP 49
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 25.9 bits (57), Expect = 1.5
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 177 YTLCSASVQDIIVRYEGR 194
YT + +Q +I G+
Sbjct: 56 YTFATRKLQPMITSETGK 73
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 85
Score = 25.8 bits (57), Expect = 1.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 177 YTLCSASVQDIIVRYEGR 194
YT + + I+ + EGR
Sbjct: 56 YTFSTPKFEPIVTQQEGR 73
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA
topoisomerase I, catalytic core {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 25.2 bits (55), Expect = 6.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 105 YDVPIPGYKTKTTLNLRLWSTKVAAEDFD 133
+ VPI KT W+ +A ED++
Sbjct: 234 WGVPIEKIYNKTQREKFAWAIDMADEDYE 262
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 25.6 bits (56), Expect = 7.3
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 93 QKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLH--AFNTGDHAKAYAAIT 150
+ + +VP+PG + ++ + + AA H AF +A +
Sbjct: 158 DCQREQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVI 217
Query: 151 NVEKICYVLYPGDEY 165
+ V+ PG E+
Sbjct: 218 AI-----VVQPGVEF 227
>g1hle.1 e.1.1.1 (A:,B:) Elastase inhibitor {Horse (Equus caballus)
[TaxId: 9796]}
Length = 375
Score = 25.2 bits (54), Expect = 8.2
Identities = 10/58 (17%), Positives = 17/58 (29%)
Query: 38 LTELDAALGNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSLKMVRKKLQKV 95
++ AL +E + S F A +N P L + + L
Sbjct: 51 AAQVSKALYFDTVEDIHSRFQSLNADINKPGAPYILKLANRLYGEKTYNFLADFLAST 108
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
maritima [TaxId: 2336]}
Length = 180
Score = 24.8 bits (53), Expect = 8.8
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 71 MDLDTNMACLNNSSLKMV----RKKLQKVGGENVMDVAYDVP 108
+DL T++ K V +KKL+K+G E + D+ P
Sbjct: 6 VDLSTDI-----QYAKGVGPNRKKKLKKLGIETLRDLLEFFP 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.415
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 891,126
Number of extensions: 39476
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 15
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)