BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026347
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 61.6 bits (148), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 182 GTQRDRVMPD---------LCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRID 232
G Q+ RV+ + LC++C E+E N+ F PCGH CC C+ L +CP+CR R++
Sbjct: 1 GAQQTRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVE 60
Query: 233 QVVRTF 238
V +
Sbjct: 61 HVQHVY 66
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 193 CVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTF 238
C +C+++E + VF+PCGH+ C C+ L CP+CR I VRTF
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 193 CVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTF 238
C +C+++E + VF+PCGH+ C C+ L CP+CR I VRTF
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTF 72
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 172 TNGQAENGSDGTQRDRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLC 227
T+ Q E ++ R LC IC+++ VFVPCGH+ C C+ + CP+C
Sbjct: 6 TSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 61
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 172 TNGQAENGSDGTQRDRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLC 227
T+ Q E ++ R LC IC+++ VFVPCGH+ C C+ + CP+C
Sbjct: 6 TSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 61
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 192 LCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLC 227
LC IC+++ VFVPCGH+ C C+ + CP+C
Sbjct: 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 62
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 44.7 bits (104), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 178 NGSDGTQRDRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQ 233
+GS G + CV+C N V +PC H C C C + CP+CR+ + +
Sbjct: 3 SGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 58
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 193 CVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTF 238
C +CL++ + VFVPCGH+ C C+ L CP+CR + VRTF
Sbjct: 16 CKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVRTF 60
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 192 LCVICLEQEYNAVFVPCGH-MCCCIICSWHLTN---CPLCRRRI 231
LC IC E + + PCGH MC + SW + CP CR I
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 192 LCVICLEQEYNAVFVPCGH-MCCCIICSWHLTN---CPLCRRRI 231
LC IC E + + PCGH MC + SW + CP CR I
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 192 LCVICLEQEYNAVFVPCGH-MCCCIICSWHLTN---CPLCRRRI 231
LC IC E + + PCGH MC + SW + CP CR I
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 192 LCVICLEQEYNAVFVPCGH-MCCCIICSWHLTN---CPLCRRRI 231
LC IC E + + PCGH MC + SW + CP CR I
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 192 LCVICLEQEYNAVFVPCGH-MCCCIICSWHLTN---CPLCRRRI 231
LC IC E + + PCGH MC + +W ++ CP CR I
Sbjct: 340 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 36.6 bits (83), Expect = 0.014, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 178 NGSDGTQRDRVMPDLCVICLEQEYNAVFVPCGHMCC--CII-CSWHLTNCPLCRRRIDQ 233
+GS G + C ICL+ + V +PC H+ C C+ SW C LCR+ I +
Sbjct: 3 SGSSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.4 bits (80), Expect = 0.027, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 193 CVICLEQEYN-AVFVPCGHMCCCI-ICSWHLTN--CPLCRRRIDQVVRT 237
C ICLE N ++ +PC H C + I W N CPLC+ ++ VV T
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 34.7 bits (78), Expect = 0.046, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 193 CVICLEQEYNAVFV--PCGHMCCCIICSWHLTN----CPLCRRRIDQVVRTF 238
CVIC + N V GH+ C C+ L CP+CR+ I +V T+
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 34.7 bits (78), Expect = 0.048, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 193 CVICLEQEYNAVFV--PCGHMCCCIICSWHLTN----CPLCRRRIDQVVRTF 238
CVIC + N V GH+ C C+ L CP+CR+ I +V T+
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 192 LCVICLEQEYNAVFVPCGH-MCCCIICSWHLTN---CPLCRRRI 231
LC IC E + + PCGH MC + SW + CP CR I
Sbjct: 29 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 192 LCVICLEQEYNAVFVPCGH-MCCCIICSWHLTN---CPLCRRRI 231
LC IC E + + PCGH MC + SW + CP CR I
Sbjct: 26 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 192 LCVICLEQEYNAVFVPCGH-MCCCIICSWHLTN---CPLCRRRI 231
LC IC E + + PCGH MC + +W ++ CP CR I
Sbjct: 28 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.8 bits (68), Expect = 0.69, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 178 NGSDGTQRDRVMPDLCVICLEQEYNAVFVPCGHMCC--CIICSWHLTN----CPLC 227
+GS G + + C +CLE V + CGH C CI W CP+C
Sbjct: 3 SGSSGALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|1UW9|A Chain A, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|B Chain B, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|E Chain E, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|H Chain H, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|K Chain K, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|O Chain O, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|R Chain R, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|V Chain V, L290f-a222t Chlamydomonas Rubisco Mutant
Length = 475
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G FL RA+H ++ R+R +H RVLA A
Sbjct: 288 GLFLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|1UWA|A Chain A, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|B Chain B, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|E Chain E, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|H Chain H, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|K Chain K, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|O Chain O, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|R Chain R, L290f Mutant Rubisco From Chlamydomonas
pdb|1UWA|V Chain V, L290f Mutant Rubisco From Chlamydomonas
Length = 475
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G FL RA+H ++ R+R +H RVLA A
Sbjct: 288 GLFLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 29.6 bits (65), Expect = 1.4, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 193 CVICLEQ--EYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTF 238
C +C ++ + N + GH+ C C+ L +CP+C++ I V++ F
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 16 TGRAFVVGARGATGFVLTVGSEVFEESGRSLVRG-TLDYLQGLKMLGVKR 64
G+ F V +G +G V+ SE F+ESGR LVR + ++ G G K+
Sbjct: 417 NGKVFDVMDKG-SGAVVVTNSESFDESGRLLVRNQSTTFIVGAGKFGGKK 465
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From Streptococcus
Pyogenes
Length = 254
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 55 QGLKMLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRI----QRPHKGPFYVSPKTIDELI 110
+ L++LG++R E ++ LT + +++DI T+ + RP + P P D ++
Sbjct: 189 KSLEVLGIQRSEAVMVGDNYLTDIMAGIQNDIATILVTTGFTRPEEVPTL--PIQPDHVL 246
Query: 111 ENLGKW 116
+L +W
Sbjct: 247 SSLDEW 252
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 193 CVICLEQEYNAVFVPCGHMCC--CIICS 218
C ICL AV PCGH C CII S
Sbjct: 9 CPICLMALREAVQTPCGHRFCKACIIKS 36
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 179 GSDGTQ-RDRVMPD--LCVICLEQEYNAVFVP-CGHMCC--CIICSWHLTN---CPLCRR 229
GS G+ D +PD LC+IC + +AV +P CG+ C CI + ++ CP C +
Sbjct: 1 GSSGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 192 LCVICLEQEYNAVFVPCGHMCC--CII----CSWHLTNCPLCRRRI 231
+C ICL+ V + CGH C CI S CPLC+ +
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 193 CVICLEQEYNAVFVPCGH-MCCCIICSW--HLTNCPLCRRRI 231
C+IC E AV + C H C I W CP+CR+ I
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 193 CVICLEQEYNAVFVPCGH-MCCCIICSW--HLTNCPLCRRRI 231
C+IC E AV + C H C I W CP+CR+ I
Sbjct: 67 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|3NAV|A Chain A, Crystal Structure Of An Alpha Subunit Of Tryptophan
Synthase From Vibrio Cholerae O1 Biovar El Tor Str.
N16961
pdb|3NAV|B Chain B, Crystal Structure Of An Alpha Subunit Of Tryptophan
Synthase From Vibrio Cholerae O1 Biovar El Tor Str.
N16961
Length = 271
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 47 VRGTLDYLQGLKMLGVKRIERL-LPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKT 105
RG D+ Q + GV + +PT S V A K I P +++P T
Sbjct: 111 ARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQ----------PIFIAPPT 160
Query: 106 I-DELIENLGKWARWYKYASFGLTIFGTFLIAKRAIHYILQRKRRWELHRRVL 157
DE + + + + Y Y + G A +H +L+R ++++ +L
Sbjct: 161 ASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALL 213
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 13 DDGTGRAFVVGARGATGFVLTVGSEVFEESGRS 45
DDGT FVV + G F +G ++FE+S +
Sbjct: 224 DDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNEN 256
>pdb|2V67|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|C Chain C, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|D Chain D, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|E Chain E, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|F Chain F, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|G Chain G, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
pdb|2V67|H Chain H, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Supressor Mutation T342i
Length = 475
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G L RA+H ++ R+R +H RVLA A
Sbjct: 288 GLLLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|2V6A|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|C Chain C, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|D Chain D, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|E Chain E, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|F Chain F, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|G Chain G, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
pdb|2V6A|H Chain H, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, G344s
Length = 475
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G L RA+H ++ R+R +H RVLA A
Sbjct: 288 GLLLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|2VDI|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|C Chain C, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|D Chain D, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|E Chain E, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|F Chain F, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|G Chain G, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
pdb|2VDI|H Chain H, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C192s Mutation
Length = 475
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G L RA+H ++ R+R +H RVLA A
Sbjct: 288 GLLLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|2VDH|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|C Chain C, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|D Chain D, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|E Chain E, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|F Chain F, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|G Chain G, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
pdb|2VDH|H Chain H, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit C172s Mutation
Length = 475
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G L RA+H ++ R+R +H RVLA A
Sbjct: 288 GLLLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|2V68|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|C Chain C, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|D Chain D, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|E Chain E, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|F Chain F, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|G Chain G, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
pdb|2V68|H Chain H, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With Large-Subunit Mutations V331a, T342i
Length = 475
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G L RA+H ++ R+R +H RVLA A
Sbjct: 288 GLLLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|2V63|A Chain A, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|B Chain B, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|C Chain C, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|D Chain D, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|E Chain E, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|F Chain F, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|G Chain G, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
pdb|2V63|H Chain H, Crystal Structure Of Rubisco From Chlamydomonas
Reinhardtii With A Large-Subunit V331a Mutation
Length = 475
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G L RA+H ++ R+R +H RVLA A
Sbjct: 288 GLLLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|1GK8|A Chain A, Rubisco From Chlamydomonas Reinhardtii
pdb|1GK8|C Chain C, Rubisco From Chlamydomonas Reinhardtii
pdb|1GK8|E Chain E, Rubisco From Chlamydomonas Reinhardtii
pdb|1GK8|G Chain G, Rubisco From Chlamydomonas Reinhardtii
pdb|1IR2|A Chain A, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|B Chain B, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|C Chain C, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|D Chain D, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|E Chain E, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|F Chain F, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|G Chain G, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|H Chain H, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|S Chain S, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|T Chain T, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|U Chain U, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|V Chain V, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|W Chain W, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|X Chain X, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|Y Chain Y, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1IR2|Z Chain Z, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
CHLAMYDOMONAS Reinhardtii Complexed With
2-Carboxyarabinitol-1,5-Bisphosphate (2- Cabp)
pdb|1UZD|A Chain A, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|B Chain B, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|E Chain E, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|H Chain H, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|K Chain K, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|O Chain O, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|R Chain R, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZD|V Chain V, Chlamydomonas,Spinach Chimeric Rubisco
pdb|1UZH|A Chain A, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|B Chain B, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|E Chain E, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|H Chain H, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|K Chain K, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|O Chain O, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|R Chain R, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
pdb|1UZH|V Chain V, A Chimeric Chlamydomonas, Synechococcus Rubisco Enzyme
Length = 475
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G L RA+H ++ R+R +H RVLA A
Sbjct: 288 GLLLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|2V69|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|C Chain C, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|D Chain D, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|E Chain E, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|F Chain F, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|G Chain G, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
pdb|2V69|H Chain H, Crystal Structure Of Chlamydomonas Reinhardtii Rubisco
With A Large-Subunit Mutation D473e
Length = 475
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 131 GTFLIAKRAIHYILQRKRRWELHRRVLAAA 160
G L RA+H ++ R+R +H RVLA A
Sbjct: 288 GLLLHIHRAMHAVIDRQRNHGIHFRVLAKA 317
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 193 CVICLEQEYNAVFVPCGH-MCCCIICSW--HLTNCPLCRRRI 231
C+IC E AV + C H C I W CP+CR+ I
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|1WVI|A Chain A, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|B Chain B, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|C Chain C, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|D Chain D, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
Length = 257
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 55 QGLKMLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVS--PKTIDELIEN 112
+ L LGVKR E ++ LT + +K+DI T+ + P V P D ++ +
Sbjct: 189 KALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSS 248
Query: 113 LGKW 116
L +W
Sbjct: 249 LAEW 252
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 13 DDGTGRAFVVGARGATGFVLTVGSEVFEESGRS 45
DDGT FVV + G F +G ++FE+S +
Sbjct: 220 DDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNEN 252
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 27.7 bits (60), Expect = 5.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 178 NGSDGTQRDRVMPDLCVICLEQEYNAVFVPCGHMCC--CIICSWH--------LTNCPLC 227
+GS G ++ V C ICLE + + CGH C CI S ++CP+C
Sbjct: 3 SGSSGNVQEEVT---CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 27.7 bits (60), Expect = 5.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 192 LCVICLEQEYNAVFVPCGHMCC--CII----CSWHLTNCPLC 227
+C ICL+ V + CGH C CI S CPLC
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 179 GSDGTQRDRVMPDL----CVICLEQEYNAVFVPCGHMCC--CIICSWHLTN--CPLCRRR 230
GS +D +P L C IC+E V +PC H C C + + CP CRRR
Sbjct: 1 GSMALPKD-AIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRR 59
Query: 231 IDQVVR 236
+ R
Sbjct: 60 VSSWTR 65
>pdb|3DPI|A Chain A, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
pdb|3DPI|B Chain B, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
Length = 285
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 54 LQGLKMLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELIE 111
L GL V+ + R+L G +V + D+ T+R QRP + + ++ + ID+ +E
Sbjct: 193 LAGLTKRRVRALARML--GADEPLVLKTPTADLETLRPQRPDEHAYGITYEQIDDFLE 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,385,954
Number of Sequences: 62578
Number of extensions: 303955
Number of successful extensions: 941
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 59
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)