Query 026347
Match_columns 240
No_of_seqs 247 out of 1418
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:51:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1571 Predicted E3 ubiquitin 100.0 1.2E-44 2.6E-49 314.7 7.9 239 1-240 110-355 (355)
2 PF12483 GIDE: E3 Ubiquitin li 100.0 7E-32 1.5E-36 217.4 12.7 130 1-130 22-156 (160)
3 KOG4172 Predicted E3 ubiquitin 99.4 5.1E-15 1.1E-19 95.0 -2.5 50 191-240 8-62 (62)
4 KOG4265 Predicted E3 ubiquitin 99.3 4.7E-13 1E-17 117.4 2.5 53 188-240 288-344 (349)
5 PF13920 zf-C3HC4_3: Zinc fing 99.3 7.8E-13 1.7E-17 85.8 0.9 44 191-234 3-50 (50)
6 KOG4275 Predicted E3 ubiquitin 99.3 7.5E-13 1.6E-17 112.8 0.8 51 190-240 300-350 (350)
7 KOG0823 Predicted E3 ubiquitin 99.1 5.6E-11 1.2E-15 98.8 3.6 50 188-238 45-103 (230)
8 KOG0317 Predicted E3 ubiquitin 99.0 1.4E-10 3E-15 99.2 3.1 45 190-235 239-287 (293)
9 KOG4628 Predicted E3 ubiquitin 98.9 5.5E-09 1.2E-13 92.7 8.1 43 191-234 230-280 (348)
10 PLN03208 E3 ubiquitin-protein 98.9 8.7E-10 1.9E-14 90.1 2.6 49 189-238 17-87 (193)
11 PHA02929 N1R/p28-like protein; 98.6 2.7E-08 5.8E-13 84.5 2.1 47 190-237 174-232 (238)
12 KOG1100 Predicted E3 ubiquitin 98.5 4.4E-08 9.5E-13 81.9 2.4 47 192-238 160-206 (207)
13 PF13923 zf-C3HC4_2: Zinc fing 98.5 2.3E-08 4.9E-13 61.3 0.5 34 193-227 1-39 (39)
14 PF13639 zf-RING_2: Ring finge 98.5 2.8E-08 6.1E-13 62.5 0.2 36 192-228 2-44 (44)
15 KOG0320 Predicted E3 ubiquitin 98.4 6E-08 1.3E-12 77.7 1.2 47 191-238 132-186 (187)
16 KOG2164 Predicted E3 ubiquitin 98.4 7.8E-08 1.7E-12 88.3 1.1 48 190-238 186-244 (513)
17 PF14634 zf-RING_5: zinc-RING 98.4 1.2E-07 2.5E-12 59.7 1.3 36 193-229 2-44 (44)
18 PF15227 zf-C3HC4_4: zinc fing 98.3 1.4E-07 3.1E-12 58.7 0.8 34 193-227 1-42 (42)
19 PHA02926 zinc finger-like prot 98.3 1.4E-07 3E-12 78.4 0.0 46 190-236 170-234 (242)
20 COG5574 PEX10 RING-finger-cont 98.1 6.3E-07 1.4E-11 76.1 0.9 43 190-233 215-263 (271)
21 PF00097 zf-C3HC4: Zinc finger 98.1 6.6E-07 1.4E-11 55.2 0.7 34 193-227 1-41 (41)
22 COG5243 HRD1 HRD ubiquitin lig 98.1 4.9E-06 1.1E-10 73.8 6.0 43 188-231 285-344 (491)
23 KOG0978 E3 ubiquitin ligase in 98.1 4.3E-07 9.3E-12 87.0 -1.0 46 192-238 645-697 (698)
24 cd00162 RING RING-finger (Real 98.1 1.3E-06 2.8E-11 54.0 1.3 39 192-231 1-45 (45)
25 TIGR00599 rad18 DNA repair pro 98.0 1.4E-06 3E-11 79.3 1.2 45 188-233 24-72 (397)
26 smart00504 Ubox Modified RING 98.0 2.4E-06 5.2E-11 57.5 1.6 41 192-233 3-47 (63)
27 smart00184 RING Ring finger. E 98.0 2.1E-06 4.6E-11 51.2 1.0 34 193-227 1-39 (39)
28 KOG1785 Tyrosine kinase negati 97.8 4E-06 8.6E-11 75.0 0.1 47 189-236 368-420 (563)
29 PF13445 zf-RING_UBOX: RING-ty 97.8 5.9E-06 1.3E-10 51.6 0.2 27 193-221 1-31 (43)
30 PF12678 zf-rbx1: RING-H2 zinc 97.7 1.4E-05 3.1E-10 55.8 1.0 36 192-228 21-73 (73)
31 COG5432 RAD18 RING-finger-cont 97.7 1.2E-05 2.7E-10 69.2 0.6 44 188-232 23-70 (391)
32 COG5540 RING-finger-containing 97.7 1.7E-05 3.7E-10 68.7 1.4 43 190-233 323-373 (374)
33 KOG4692 Predicted E3 ubiquitin 97.6 3.1E-05 6.8E-10 68.4 2.3 44 189-233 421-468 (489)
34 KOG0287 Postreplication repair 97.6 1.6E-05 3.4E-10 69.9 0.0 44 189-233 22-69 (442)
35 KOG0802 E3 ubiquitin ligase [P 97.5 0.00014 3E-09 69.4 5.3 43 188-231 289-340 (543)
36 KOG2177 Predicted E3 ubiquitin 97.4 3E-05 6.4E-10 66.8 0.1 40 189-229 12-55 (386)
37 PF14447 Prok-RING_4: Prokaryo 97.4 7.4E-05 1.6E-09 48.6 1.8 43 190-233 7-51 (55)
38 COG5236 Uncharacterized conser 97.4 0.00015 3.3E-09 63.9 3.8 48 187-235 58-111 (493)
39 PF14835 zf-RING_6: zf-RING of 97.3 0.00014 3E-09 49.0 1.5 40 191-231 8-50 (65)
40 PF04564 U-box: U-box domain; 97.1 0.00018 3.8E-09 50.2 1.2 43 190-233 4-51 (73)
41 COG5152 Uncharacterized conser 96.9 0.00021 4.6E-09 58.5 0.1 47 186-233 192-242 (259)
42 KOG1813 Predicted E3 ubiquitin 96.8 0.00056 1.2E-08 59.3 1.6 47 187-234 238-288 (313)
43 KOG0828 Predicted E3 ubiquitin 96.6 0.0005 1.1E-08 63.3 0.0 44 189-233 570-635 (636)
44 KOG0311 Predicted E3 ubiquitin 96.6 0.00019 4.1E-09 63.6 -3.0 44 190-234 43-92 (381)
45 KOG4159 Predicted E3 ubiquitin 96.5 0.00079 1.7E-08 61.5 0.6 45 188-233 82-130 (398)
46 KOG0804 Cytoplasmic Zn-finger 96.5 0.0017 3.7E-08 59.2 2.4 41 188-229 173-219 (493)
47 PF12861 zf-Apc11: Anaphase-pr 96.4 0.0016 3.4E-08 46.5 1.3 28 204-232 48-82 (85)
48 KOG1039 Predicted E3 ubiquitin 96.3 0.0015 3.2E-08 58.6 1.3 46 190-236 161-225 (344)
49 KOG2879 Predicted E3 ubiquitin 96.3 0.0027 5.8E-08 54.6 2.6 47 186-233 235-288 (298)
50 KOG1734 Predicted RING-contain 96.1 0.032 6.9E-07 48.0 7.9 46 187-233 221-282 (328)
51 KOG0826 Predicted E3 ubiquitin 95.2 0.054 1.2E-06 47.8 6.1 51 187-238 297-354 (357)
52 PF04641 Rtf2: Rtf2 RING-finge 95.0 0.015 3.3E-07 50.4 2.3 46 187-233 110-162 (260)
53 KOG3002 Zn finger protein [Gen 94.6 0.015 3.2E-07 51.4 1.2 43 190-234 48-93 (299)
54 KOG0297 TNF receptor-associate 94.5 0.017 3.8E-07 53.0 1.4 47 188-235 19-70 (391)
55 KOG0825 PHD Zn-finger protein 94.3 0.0087 1.9E-07 58.2 -1.0 44 192-236 125-175 (1134)
56 KOG1001 Helicase-like transcri 93.8 0.02 4.2E-07 56.0 0.3 41 191-233 455-501 (674)
57 KOG2932 E3 ubiquitin ligase in 93.7 0.022 4.8E-07 49.9 0.5 46 189-235 89-137 (389)
58 KOG1814 Predicted E3 ubiquitin 92.8 0.038 8.2E-07 50.2 0.5 31 190-221 184-217 (445)
59 smart00744 RINGv The RING-vari 92.4 0.051 1.1E-06 34.7 0.6 36 192-228 1-49 (49)
60 PF10367 Vps39_2: Vacuolar sor 92.2 0.36 7.7E-06 35.4 5.1 29 190-219 78-108 (109)
61 KOG4445 Uncharacterized conser 91.6 0.037 8.1E-07 48.3 -0.9 27 192-219 117-146 (368)
62 PF05290 Baculo_IE-1: Baculovi 91.5 0.058 1.3E-06 41.6 0.1 44 192-236 82-136 (140)
63 KOG1428 Inhibitor of type V ad 91.3 0.066 1.4E-06 55.6 0.4 46 188-234 3484-3546(3738)
64 KOG1002 Nucleotide excision re 91.1 0.047 1E-06 51.1 -0.8 41 190-231 536-585 (791)
65 KOG3039 Uncharacterized conser 91.1 0.11 2.4E-06 44.2 1.5 42 191-233 222-271 (303)
66 COG5175 MOT2 Transcriptional r 87.8 0.17 3.6E-06 45.1 0.1 43 190-233 14-65 (480)
67 PF11793 FANCL_C: FANCL C-term 87.6 0.15 3.2E-06 35.1 -0.3 41 192-233 4-67 (70)
68 COG5219 Uncharacterized conser 86.9 0.14 3.1E-06 51.2 -0.9 41 192-233 1471-1524(1525)
69 KOG3799 Rab3 effector RIM1 and 86.2 1 2.2E-05 35.0 3.5 39 189-231 64-117 (169)
70 KOG2660 Locus-specific chromos 86.0 0.14 3E-06 45.4 -1.4 46 190-236 15-65 (331)
71 KOG2113 Predicted RNA binding 86.0 0.57 1.2E-05 41.4 2.4 47 191-237 344-392 (394)
72 PF11789 zf-Nse: Zinc-finger o 85.4 0.32 6.9E-06 32.1 0.4 38 188-226 9-53 (57)
73 PF14570 zf-RING_4: RING/Ubox 85.3 0.29 6.2E-06 31.2 0.2 38 193-231 1-47 (48)
74 PF10272 Tmpp129: Putative tra 84.9 0.56 1.2E-05 42.5 1.9 17 190-206 271-287 (358)
75 PF04710 Pellino: Pellino; In 84.8 0.28 6.2E-06 44.5 0.0 43 190-233 328-402 (416)
76 COG5222 Uncharacterized conser 84.2 0.33 7.2E-06 42.5 0.2 39 190-229 274-318 (427)
77 PF02318 FYVE_2: FYVE-type zin 82.9 2.8 6.1E-05 31.7 4.8 40 190-230 54-103 (118)
78 PF05883 Baculo_RING: Baculovi 80.8 0.39 8.4E-06 37.3 -0.6 30 191-221 27-65 (134)
79 KOG3842 Adaptor protein Pellin 79.9 1 2.2E-05 39.9 1.5 43 190-233 341-415 (429)
80 COG5220 TFB3 Cdk activating ki 79.4 0.4 8.7E-06 40.7 -1.0 39 190-229 10-61 (314)
81 PF03854 zf-P11: P-11 zinc fin 78.7 0.84 1.8E-05 28.9 0.5 42 192-235 4-49 (50)
82 COG5194 APC11 Component of SCF 78.4 0.96 2.1E-05 31.8 0.8 28 204-232 50-81 (88)
83 KOG3161 Predicted E3 ubiquitin 78.2 0.53 1.1E-05 45.3 -0.7 40 189-230 10-55 (861)
84 KOG1941 Acetylcholine receptor 73.3 1.3 2.9E-05 40.3 0.5 44 188-232 363-416 (518)
85 KOG2113 Predicted RNA binding 73.2 1.6 3.5E-05 38.6 1.0 48 190-237 136-188 (394)
86 PF02891 zf-MIZ: MIZ/SP-RING z 73.0 1.9 4.2E-05 27.5 1.1 38 192-230 4-50 (50)
87 KOG1493 Anaphase-promoting com 72.6 0.62 1.3E-05 32.5 -1.4 25 207-232 50-81 (84)
88 KOG3579 Predicted E3 ubiquitin 72.2 1.4 3.1E-05 38.4 0.4 30 190-220 268-301 (352)
89 KOG4362 Transcriptional regula 70.0 1.2 2.7E-05 43.4 -0.5 42 191-233 22-70 (684)
90 PHA02825 LAP/PHD finger-like p 69.9 2.1 4.6E-05 34.2 0.9 44 189-233 7-60 (162)
91 PF10883 DUF2681: Protein of u 69.8 33 0.00073 24.6 7.0 28 127-154 10-37 (87)
92 PHA03096 p28-like protein; Pro 69.7 1.6 3.5E-05 38.3 0.2 30 191-221 179-216 (284)
93 PF06305 DUF1049: Protein of u 68.7 31 0.00067 22.8 7.3 22 140-161 41-62 (68)
94 KOG3113 Uncharacterized conser 67.6 2.7 5.9E-05 36.1 1.2 45 188-233 109-159 (293)
95 PF08114 PMP1_2: ATPase proteo 66.3 17 0.00038 22.2 4.1 20 128-147 18-37 (43)
96 COG5183 SSM4 Protein involved 63.7 3.1 6.8E-05 41.3 0.9 46 187-232 9-66 (1175)
97 KOG2817 Predicted E3 ubiquitin 61.5 3.1 6.7E-05 37.9 0.4 40 191-231 335-384 (394)
98 cd00350 rubredoxin_like Rubred 60.6 5 0.00011 23.2 1.1 16 221-236 17-32 (33)
99 PF04216 FdhE: Protein involve 58.7 5.8 0.00013 34.8 1.7 46 190-236 172-226 (290)
100 cd04478 RPA2_DBD_D RPA2_DBD_D: 57.3 34 0.00073 24.2 5.3 26 66-92 45-70 (95)
101 KOG2930 SCF ubiquitin ligase, 55.8 3.8 8.3E-05 30.3 0.0 24 206-230 79-106 (114)
102 PF04710 Pellino: Pellino; In 55.6 3.9 8.4E-05 37.4 0.0 29 202-230 303-337 (416)
103 cd00729 rubredoxin_SM Rubredox 55.0 7.1 0.00015 22.8 1.1 14 222-235 19-32 (34)
104 KOG1940 Zn-finger protein [Gen 53.9 3.1 6.8E-05 36.3 -0.8 45 192-238 160-212 (276)
105 KOG2114 Vacuolar assembly/sort 53.6 16 0.00034 36.7 3.8 46 191-237 841-888 (933)
106 PF07191 zinc-ribbons_6: zinc- 53.3 4 8.7E-05 28.1 -0.2 39 191-234 2-43 (70)
107 PF10235 Cript: Microtubule-as 53.1 7.5 0.00016 28.1 1.1 37 190-232 44-80 (90)
108 PF00558 Vpu: Vpu protein; In 51.5 26 0.00055 24.9 3.6 14 142-155 29-42 (81)
109 PRK00523 hypothetical protein; 50.9 60 0.0013 22.5 5.2 27 119-145 6-32 (72)
110 PF11190 DUF2976: Protein of u 50.4 71 0.0015 22.9 5.8 53 89-147 2-54 (87)
111 PF01102 Glycophorin_A: Glycop 49.5 23 0.0005 27.1 3.4 25 117-141 65-89 (122)
112 PF09835 DUF2062: Uncharacteri 48.8 91 0.002 24.3 6.9 29 103-131 103-131 (154)
113 PF12906 RINGv: RING-variant d 48.4 9.2 0.0002 24.0 0.9 35 193-227 1-47 (47)
114 KOG3842 Adaptor protein Pellin 48.3 11 0.00023 33.7 1.5 35 202-237 316-356 (429)
115 KOG3970 Predicted E3 ubiquitin 47.4 9 0.00019 32.5 0.9 42 191-233 51-106 (299)
116 PF14880 COX14: Cytochrome oxi 47.3 80 0.0017 20.7 7.2 32 118-149 15-46 (59)
117 PF14316 DUF4381: Domain of un 46.1 58 0.0013 25.3 5.4 15 131-145 33-47 (146)
118 PRK13872 conjugal transfer pro 45.8 29 0.00064 29.2 3.9 35 95-129 16-50 (228)
119 PRK03564 formate dehydrogenase 45.7 13 0.00028 33.1 1.7 42 188-229 185-234 (309)
120 KOG0825 PHD Zn-finger protein 45.6 7.6 0.00017 38.7 0.3 41 192-233 101-155 (1134)
121 PLN02189 cellulose synthase 45.4 13 0.00028 38.3 1.9 43 190-233 34-88 (1040)
122 cd04488 RecG_wedge_OBF RecG_we 45.4 34 0.00073 22.3 3.5 30 65-95 42-71 (75)
123 PF11669 WBP-1: WW domain-bind 44.9 45 0.00097 24.6 4.2 10 118-127 21-30 (102)
124 PRK13836 conjugal transfer pro 44.0 32 0.00069 28.9 3.8 36 95-130 7-42 (220)
125 PF10571 UPF0547: Uncharacteri 43.7 11 0.00025 20.6 0.7 16 214-229 3-22 (26)
126 TIGR01562 FdhE formate dehydro 43.7 12 0.00026 33.3 1.2 42 189-230 183-233 (305)
127 PF10176 DUF2370: Protein of u 43.1 49 0.0011 28.3 4.7 30 121-150 194-223 (233)
128 PF07975 C1_4: TFIIH C1-like d 42.8 12 0.00027 24.0 0.9 21 207-228 26-50 (51)
129 PRK01844 hypothetical protein; 42.6 82 0.0018 21.8 4.9 24 122-145 8-31 (72)
130 PF04423 Rad50_zn_hook: Rad50 42.6 9 0.00019 24.6 0.2 10 223-232 22-31 (54)
131 smart00734 ZnF_Rad18 Rad18-lik 41.4 5.1 0.00011 21.9 -1.0 9 223-231 3-11 (26)
132 KOG1812 Predicted E3 ubiquitin 41.3 7.3 0.00016 35.8 -0.5 30 190-220 146-179 (384)
133 KOG3039 Uncharacterized conser 40.9 12 0.00025 32.3 0.6 30 190-220 43-72 (303)
134 PHA02610 uvsY.-2 hypothetical 40.9 12 0.00025 24.1 0.5 15 222-236 2-16 (53)
135 PF10886 DUF2685: Protein of u 40.5 13 0.00028 24.2 0.7 14 222-235 2-15 (54)
136 KOG2068 MOT2 transcription fac 40.0 18 0.00038 32.4 1.7 46 190-236 249-302 (327)
137 COG3114 CcmD Heme exporter pro 39.2 1.2E+02 0.0026 20.5 6.7 20 119-138 17-36 (67)
138 KOG4218 Nuclear hormone recept 38.7 14 0.0003 33.3 0.8 16 188-203 13-28 (475)
139 PF10146 zf-C4H2: Zinc finger- 38.4 11 0.00024 32.1 0.2 19 213-231 196-218 (230)
140 KOG3899 Uncharacterized conser 36.3 11 0.00023 33.3 -0.3 9 223-231 356-364 (381)
141 KOG0298 DEAD box-containing he 36.2 7.6 0.00017 40.6 -1.3 42 190-232 1153-1199(1394)
142 PRK13887 conjugal transfer pro 35.2 57 0.0012 28.0 4.1 37 93-129 28-64 (250)
143 PF12273 RCR: Chitin synthesis 35.2 31 0.00068 26.3 2.2 18 119-136 2-19 (130)
144 KOG1815 Predicted E3 ubiquitin 34.7 12 0.00026 35.0 -0.2 30 190-220 70-100 (444)
145 TIGR03141 cytochro_ccmD heme e 34.7 1.1E+02 0.0024 18.8 5.8 14 120-133 7-20 (45)
146 PF14569 zf-UDP: Zinc-binding 34.6 15 0.00032 25.8 0.2 43 190-233 9-63 (80)
147 PF05439 JTB: Jumping transloc 34.4 13 0.00029 28.1 0.0 40 115-154 73-112 (114)
148 COG1592 Rubrerythrin [Energy p 34.0 18 0.00038 29.3 0.7 24 208-235 140-163 (166)
149 PF09297 zf-NADH-PPase: NADH p 34.0 12 0.00025 21.3 -0.3 19 210-229 3-29 (32)
150 cd04483 hOBFC1_like hOBFC1_lik 33.8 34 0.00073 24.6 2.1 26 65-91 59-84 (92)
151 PF09237 GAGA: GAGA factor; I 32.9 5.7 0.00012 25.6 -1.8 8 190-197 24-31 (54)
152 PF00558 Vpu: Vpu protein; In 32.9 62 0.0014 22.9 3.2 21 137-157 27-47 (81)
153 PF12123 Amidase02_C: N-acetyl 32.7 52 0.0011 20.6 2.5 28 88-116 7-35 (45)
154 PF01102 Glycophorin_A: Glycop 32.2 81 0.0018 24.1 4.0 26 122-147 66-91 (122)
155 PHA03237 envelope glycoprotein 31.3 4.1E+02 0.009 24.9 9.1 19 129-147 337-355 (424)
156 PHA02700 ORF017 DNA-binding ph 31.2 37 0.0008 24.9 1.9 22 6-27 7-29 (106)
157 COG4306 Uncharacterized protei 30.6 15 0.00033 28.2 -0.2 20 214-233 31-51 (160)
158 PLN02400 cellulose synthase 29.5 55 0.0012 34.1 3.4 43 190-233 36-90 (1085)
159 PF01336 tRNA_anti-codon: OB-f 29.0 57 0.0012 21.4 2.5 29 66-94 42-70 (75)
160 COG1198 PriA Primosomal protei 28.9 26 0.00056 35.0 1.0 15 207-221 440-454 (730)
161 PRK00398 rpoP DNA-directed RNA 28.7 21 0.00046 22.0 0.2 21 212-232 4-32 (46)
162 PLN02436 cellulose synthase A 28.6 54 0.0012 34.1 3.2 43 190-233 36-90 (1094)
163 PF15050 SCIMP: SCIMP protein 28.5 55 0.0012 25.0 2.4 36 119-154 8-45 (133)
164 PF07047 OPA3: Optic atrophy 3 28.5 2.1E+02 0.0046 22.0 5.9 13 98-110 60-72 (134)
165 PF09838 DUF2065: Uncharacteri 28.0 46 0.001 21.8 1.8 38 98-135 15-53 (57)
166 PF01528 Herpes_glycop: Herpes 27.9 1.9E+02 0.0042 26.5 6.3 19 130-148 315-333 (374)
167 KOG1952 Transcription factor N 27.5 20 0.00044 36.0 0.0 39 191-230 192-245 (950)
168 KOG2169 Zn-finger transcriptio 27.2 44 0.00096 32.8 2.3 44 188-232 304-356 (636)
169 KOG1705 Uncharacterized conser 27.0 27 0.00059 25.3 0.6 34 191-229 28-63 (110)
170 PF10083 DUF2321: Uncharacteri 26.9 15 0.00033 29.2 -0.8 24 210-234 28-52 (158)
171 smart00834 CxxC_CXXC_SSSS Puta 26.7 29 0.00062 20.4 0.6 13 222-234 27-39 (41)
172 PRK01343 zinc-binding protein; 26.4 34 0.00074 22.5 0.9 10 223-232 11-20 (57)
173 PF10217 DUF2039: Uncharacteri 26.4 18 0.0004 26.2 -0.4 36 190-230 55-90 (92)
174 PF03672 UPF0154: Uncharacteri 26.2 1.3E+02 0.0028 20.3 3.7 19 127-145 6-24 (64)
175 cd00730 rubredoxin Rubredoxin; 26.1 30 0.00065 22.1 0.6 15 222-236 35-49 (50)
176 COG1507 Uncharacterized conser 25.9 3.4E+02 0.0074 21.6 7.7 60 51-116 10-69 (167)
177 KOG4451 Uncharacterized conser 25.0 23 0.0005 30.1 -0.1 20 213-232 251-274 (286)
178 PF11694 DUF3290: Protein of u 24.9 1.4E+02 0.003 23.7 4.3 9 116-124 14-22 (149)
179 PF04995 CcmD: Heme exporter p 24.7 1.8E+02 0.0039 17.9 6.0 12 120-131 6-17 (46)
180 KOG1571 Predicted E3 ubiquitin 24.7 78 0.0017 28.7 3.1 61 59-121 209-269 (355)
181 PLN02915 cellulose synthase A 24.0 73 0.0016 33.1 3.1 44 189-233 14-69 (1044)
182 PF07295 DUF1451: Protein of u 23.9 46 0.001 26.3 1.4 26 204-230 114-139 (146)
183 PF07245 Phlebovirus_G2: Phleb 23.7 6.6E+02 0.014 24.1 10.3 41 74-116 417-462 (507)
184 PHA02862 5L protein; Provision 23.6 42 0.00092 26.5 1.1 43 190-232 2-53 (156)
185 PHA03242 envelope glycoprotein 23.5 4.7E+02 0.01 24.5 8.0 19 129-147 334-352 (428)
186 PF13240 zinc_ribbon_2: zinc-r 23.4 34 0.00073 18.0 0.4 17 214-230 2-22 (23)
187 TIGR00595 priA primosomal prot 23.2 41 0.00088 32.0 1.2 14 207-220 218-231 (505)
188 PF10882 bPH_5: Bacterial PH d 23.1 1.6E+02 0.0035 20.8 4.2 29 86-115 70-98 (100)
189 PF06679 DUF1180: Protein of u 23.0 1.3E+02 0.0028 24.2 3.8 16 131-146 105-120 (163)
190 PF03229 Alpha_GJ: Alphavirus 22.9 1.4E+02 0.003 22.7 3.7 19 125-143 96-114 (126)
191 KOG2041 WD40 repeat protein [G 22.7 4.6E+02 0.01 26.6 8.0 45 190-234 1131-1187(1189)
192 PRK00418 DNA gyrase inhibitor; 22.5 38 0.00082 22.7 0.6 11 222-232 7-17 (62)
193 COG3216 Uncharacterized protei 22.5 2.3E+02 0.005 23.2 5.1 17 86-102 105-123 (184)
194 PLN02638 cellulose synthase A 22.4 89 0.0019 32.6 3.4 43 190-233 17-71 (1079)
195 COG3701 TrbF Type IV secretory 22.1 49 0.0011 27.7 1.3 44 97-140 18-61 (228)
196 PF02656 DUF202: Domain of unk 22.0 2.4E+02 0.0053 18.7 4.6 25 120-144 45-69 (73)
197 PF15345 TMEM51: Transmembrane 21.9 56 0.0012 27.8 1.6 10 130-139 67-76 (233)
198 PRK11114 cellulose synthase re 21.7 2.5E+02 0.0054 28.2 6.4 13 98-110 704-716 (756)
199 PRK10801 colicin uptake protei 21.1 5.1E+02 0.011 21.8 7.4 29 119-147 16-44 (227)
200 PF03884 DUF329: Domain of unk 21.1 30 0.00066 22.8 -0.1 11 223-233 4-14 (57)
201 PF08229 SHR3_chaperone: ER me 21.0 4.9E+02 0.011 21.6 7.5 10 126-135 141-150 (196)
202 PF06789 UPF0258: Uncharacteri 21.0 1.1E+02 0.0025 24.3 3.0 39 93-131 100-144 (159)
203 COG4357 Zinc finger domain con 20.7 52 0.0011 24.1 1.0 12 223-234 82-93 (105)
204 PF15095 IL33: Interleukin 33; 20.3 1.3E+02 0.0029 25.6 3.4 26 4-29 131-156 (268)
205 KOG2807 RNA polymerase II tran 20.2 48 0.001 29.8 0.9 21 207-228 350-374 (378)
206 PF15099 PIRT: Phosphoinositid 20.2 89 0.0019 24.1 2.2 15 67-81 51-65 (129)
207 PF14159 CAAD: CAAD domains of 20.1 2.7E+02 0.0058 20.0 4.6 29 130-158 55-83 (90)
No 1
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=314.70 Aligned_cols=239 Identities=38% Similarity=0.652 Sum_probs=215.0
Q ss_pred CCccccccceEEeCCCee----EEEecCCCcccceeeeeeeeeecCcc-cccccccccccceeeeeeeeeecccCCCcee
Q 026347 1 MLSMSKEVPWYLDDGTGR----AFVVGARGATGFVLTVGSEVFEESGR-SLVRGTLDYLQGLKMLGVKRIERLLPTGTSL 75 (240)
Q Consensus 1 ~~~~~~~vPf~L~d~~g~----V~V~~~~~a~~~~l~~v~~~f~~~~~-s~~~~~~~~~~g~~~~G~~~~E~~L~~g~~l 75 (240)
||+..|++||+|.++++. |+|..++.+.+++++++++.|+|+.+ +++++.++|++|+++.|++++|++||+|+.+
T Consensus 110 ~~~~~~~~~~~l~~q~~~~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~ 189 (355)
T KOG1571|consen 110 FHEGGNEVPFFLRSQTTGFACEVRVSKTLGRLFLPLNVVYDLFEPSDPCSLVDVGGGYHSGVRRGGFRETERVLPLGTRL 189 (355)
T ss_pred ccCCCcccceeeccCCcceeeeeeeecceeeeeecceeeeccccccCcceeeecccccccceeeecccceEEeeccccce
Confidence 689999999999999888 99999999999999999999999985 9999999999999999999999999999999
Q ss_pred EEeeeEEecCCCCeEEeCCCCCCeEeecCCHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 026347 76 TVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIFGTFLIAKRAIHYILQ--RKRRWELH 153 (240)
Q Consensus 76 t~vGe~~~d~~g~~~iq~P~~g~~~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~gv~ll~~~~~r~~~~--~r~~~~~~ 153 (240)
|++||++.|+.++.++|+|.+|++|++....++||++++.+++.+++.++++++++++++.+...+++.+ ++++.++.
T Consensus 190 t~l~e~v~d~~~~~r~~~~~~g~~~v~~s~~d~LIsr~g~~s~~~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l~ 269 (355)
T KOG1571|consen 190 TALGELVRDGYCGVRVQPPMQGPLYVTKSAADRLISREGDLSFFVKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRRELV 269 (355)
T ss_pred eeeehheecCCCceEecCCccCcceeeccchhhHHHhhccceeeeeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHHH
Confidence 9999999998899999999999666666669999999999999999999999999999999999999988 77777777
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCCCCCCccCCcccccceeccccccceEEccCCCcccccchhhcCCCCccccccccc
Q 026347 154 RRVLAAAAVKRSEQDNEGTNGQAENGSDGTQRDRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQ 233 (240)
Q Consensus 154 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~i~~ 233 (240)
++....++ .+.....++.+..-+.++++...+...++.|+||.+++.+++|+||||+|||..|+..++.||+||+.|..
T Consensus 270 k~~~~~~~-~rae~~s~g~~gtr~~~~~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 270 KRVEDLAT-VRAELLSRGVRGTRIQNENGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRL 348 (355)
T ss_pred Hhhhhhhh-heeeeecccccccccccccCcccccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHH
Confidence 77666666 66555555554444444555666667788999999999999999999999999999999999999999999
Q ss_pred eeecccC
Q 026347 234 VVRTFRH 240 (240)
Q Consensus 234 ~~~~~~~ 240 (240)
++++|+|
T Consensus 349 ~~k~y~~ 355 (355)
T KOG1571|consen 349 VRKRYRS 355 (355)
T ss_pred HHHHhcC
Confidence 9999987
No 2
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=99.97 E-value=7e-32 Score=217.41 Aligned_cols=130 Identities=40% Similarity=0.659 Sum_probs=124.3
Q ss_pred CCccccccceEEeCCCeeEEEecCCCcccceeeeeeeeeecCccccccccccccccee---eeeeeeeecccCCCceeEE
Q 026347 1 MLSMSKEVPWYLDDGTGRAFVVGARGATGFVLTVGSEVFEESGRSLVRGTLDYLQGLK---MLGVKRIERLLPTGTSLTV 77 (240)
Q Consensus 1 ~~~~~~~vPf~L~d~~g~V~V~~~~~a~~~~l~~v~~~f~~~~~s~~~~~~~~~~g~~---~~G~~~~E~~L~~g~~lt~ 77 (240)
+++..+++||+|+|++|+|+|+++..++++++++++++|+|...+..+.++++++|.+ ++|++++|+|||+|++|||
T Consensus 22 v~~~~~~vPF~L~D~tg~v~V~~~p~~a~l~l~~v~~~f~p~~~~~~~~~~~~~~~~~~~~~~G~r~~E~~L~~G~~ltv 101 (160)
T PF12483_consen 22 VSSGTSEVPFYLEDGTGRVRVVDDPEGAELDLETVYDRFEPSPSSPPDGLFGFFSGERELEPKGYRYTEEILPVGTPLTV 101 (160)
T ss_pred EEcceeEcCEEEECCceEEEEecCcccCccceeeEEEEeEECCCCccceeeeeeccceeccccccEEEEEEcCCCCEEEE
Confidence 3678899999999999999999999999999999999999998889999999999999 9999999999999999999
Q ss_pred eeeEEecCCCCeEEeCCCCC--CeEeecCCHHHHHHHHhhHHHHHHHHHhhHHHH
Q 026347 78 VGEAVKDDIGTVRIQRPHKG--PFYVSPKTIDELIENLGKWARWYKYASFGLTIF 130 (240)
Q Consensus 78 vGe~~~d~~g~~~iq~P~~g--~~~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~ 130 (240)
+|++..|++|+++||+|++| |||||+++.++|++++.+++++|+|++++++++
T Consensus 102 vGe~~~~~~g~~~i~~p~~g~~~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~ 156 (160)
T PF12483_consen 102 VGELVRDGDGNLVIQPPKDGGQPFFISTKSEEELIRSLRSSARWWKWLAIALGVV 156 (160)
T ss_pred EEEEEEcCCCcEEEeCCCCCCccEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE
Confidence 99999999999999999998 999999999999999999999999999988776
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.1e-15 Score=94.98 Aligned_cols=50 Identities=44% Similarity=1.107 Sum_probs=46.4
Q ss_pred ccceeccccccceEEccCCCcccccchhhcCC-----CCccccccccceeecccC
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHLT-----NCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-----~CpiCR~~i~~~~~~~~~ 240 (240)
+.|.||++++.+.++.-|||+|.|++|..+++ .||+||++|..+++.|++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 57999999999999999999999999987763 699999999999999986
No 4
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.7e-13 Score=117.41 Aligned_cols=53 Identities=36% Similarity=0.941 Sum_probs=47.4
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccceeecccC
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~~~~~ 240 (240)
+....|+||++..++.+++||.|+|+|..|+..+ .+||+||++|...+.++-+
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~ 344 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVN 344 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheeccc
Confidence 4456899999999999999999999999999887 3699999999999888753
No 5
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.28 E-value=7.8e-13 Score=85.84 Aligned_cols=44 Identities=43% Similarity=1.155 Sum_probs=38.6
Q ss_pred ccceeccccccceEEccCCCcccccchhhcC----CCCccccccccce
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 234 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~ 234 (240)
..|.||++++.+++++||||.++|..|+..+ ..||+||++|+++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4799999999999999999997799999988 7999999999864
No 6
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.5e-13 Score=112.77 Aligned_cols=51 Identities=43% Similarity=1.033 Sum_probs=49.1
Q ss_pred cccceeccccccceEEccCCCcccccchhhcCCCCccccccccceeecccC
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~i~~~~~~~~~ 240 (240)
..+|.||++.|++++||+|||+..|..|-..+..|||||+.|.++++||+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 569999999999999999999999999999999999999999999999974
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.6e-11 Score=98.81 Aligned_cols=50 Identities=30% Similarity=0.725 Sum_probs=43.6
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC-------CCCcccccccc--ceeecc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRID--QVVRTF 238 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CpiCR~~i~--~~~~~~ 238 (240)
.....|.||++..+++|++.|||+| ||.|+.+| +.||+|+..|+ .++++|
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3455899999999999999999999 99999988 46999998775 478887
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.4e-10 Score=99.17 Aligned_cols=45 Identities=36% Similarity=0.911 Sum_probs=40.4
Q ss_pred cccceeccccccceEEccCCCcccccchhhcC----CCCcccccccccee
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 235 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~ 235 (240)
...|.+|+++..++..+||||.| |+.|+..| ..||+||.+.....
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCcc
Confidence 45899999999999999999999 99999988 47999999887643
No 9
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.5e-09 Score=92.68 Aligned_cols=43 Identities=37% Similarity=0.741 Sum_probs=35.8
Q ss_pred ccceeccccccc---eEEccCCCcccccchhhcC-----CCCccccccccce
Q 026347 191 DLCVICLEQEYN---AVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQV 234 (240)
Q Consensus 191 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~~ 234 (240)
..|+||++.+.. ..+|||.|.|.| .|+..| +.||+|+++|...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCCC
Confidence 589999998765 567999999955 999988 3599999988653
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.88 E-value=8.7e-10 Score=90.12 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=41.6
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC--------------------CCCccccccccc--eeecc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--------------------TNCPLCRRRIDQ--VVRTF 238 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------------------~~CpiCR~~i~~--~~~~~ 238 (240)
....|.||++...++++++|||.| |+.|+..| ..||+||.+|.. ++++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 356899999999999999999999 99999654 379999999965 56665
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.56 E-value=2.7e-08 Score=84.52 Aligned_cols=47 Identities=32% Similarity=0.865 Sum_probs=38.4
Q ss_pred cccceeccccccc--------eEEccCCCcccccchhhcC----CCCccccccccceeec
Q 026347 190 PDLCVICLEQEYN--------AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 190 ~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~~ 237 (240)
...|+||++...+ +++.+|+|.| |..|+..| ..||+||.++..+.+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3589999997543 3567899999 99999877 5899999999987653
No 12
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.4e-08 Score=81.88 Aligned_cols=47 Identities=36% Similarity=0.824 Sum_probs=44.1
Q ss_pred cceeccccccceEEccCCCcccccchhhcCCCCccccccccceeecc
Q 026347 192 LCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTF 238 (240)
Q Consensus 192 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~i~~~~~~~ 238 (240)
.|..|.++...++++||.|+++|..|...++.||+|+.++.+.+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 49999999999999999999999999988889999999999988876
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.52 E-value=2.3e-08 Score=61.29 Aligned_cols=34 Identities=41% Similarity=1.082 Sum_probs=28.6
Q ss_pred ceeccccccce-EEccCCCcccccchhhcC----CCCccc
Q 026347 193 CVICLEQEYNA-VFVPCGHMCCCIICSWHL----TNCPLC 227 (240)
Q Consensus 193 C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~----~~CpiC 227 (240)
|+||++...++ ++++|||.+ |..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence 88999999999 689999998 99998776 589987
No 14
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.48 E-value=2.8e-08 Score=62.48 Aligned_cols=36 Identities=42% Similarity=0.919 Sum_probs=30.3
Q ss_pred cceeccccc---cceEEccCCCcccccchhhcC----CCCcccc
Q 026347 192 LCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCR 228 (240)
Q Consensus 192 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CpiCR 228 (240)
.|.||++.. ..++.++|||.| |..|+..| ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence 699999876 357788999999 99999887 5899997
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6e-08 Score=77.72 Aligned_cols=47 Identities=34% Similarity=0.817 Sum_probs=37.8
Q ss_pred ccceeccccccceE--EccCCCcccccchhhcC----CCCccccccccc--eeecc
Q 026347 191 DLCVICLEQEYNAV--FVPCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 238 (240)
Q Consensus 191 ~~C~iC~~~~~~~~--~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~--~~~~~ 238 (240)
..|+||++....-+ -..|||+| |..|+... ..||+||+.|+. +.+||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 58999999887644 47999999 99999875 489999998875 34444
No 16
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=7.8e-08 Score=88.27 Aligned_cols=48 Identities=35% Similarity=0.784 Sum_probs=41.1
Q ss_pred cccceeccccccceEEccCCCcccccchhhcC---------CCCccccccccc--eeecc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------TNCPLCRRRIDQ--VVRTF 238 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------~~CpiCR~~i~~--~~~~~ 238 (240)
+..|+||++.+..++.+.|||.| |..|+.++ ..||+||..|.. +.+++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 56899999999999999999999 88998654 479999999987 55543
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.39 E-value=1.2e-07 Score=59.74 Aligned_cols=36 Identities=39% Similarity=1.046 Sum_probs=31.5
Q ss_pred ceeccccc---cceEEccCCCcccccchhhcCC----CCccccc
Q 026347 193 CVICLEQE---YNAVFVPCGHMCCCIICSWHLT----NCPLCRR 229 (240)
Q Consensus 193 C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~----~CpiCR~ 229 (240)
|.+|++.+ ..+.+++|||.+ |..|+..+. .||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence 88998877 457899999999 999998876 8999985
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.33 E-value=1.4e-07 Score=58.72 Aligned_cols=34 Identities=44% Similarity=1.001 Sum_probs=26.9
Q ss_pred ceeccccccceEEccCCCcccccchhhcC--------CCCccc
Q 026347 193 CVICLEQEYNAVFVPCGHMCCCIICSWHL--------TNCPLC 227 (240)
Q Consensus 193 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CpiC 227 (240)
|+||++-..+++.++|||.| |..|+..+ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999 99999775 158887
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.29 E-value=1.4e-07 Score=78.38 Aligned_cols=46 Identities=35% Similarity=0.827 Sum_probs=36.8
Q ss_pred cccceeccccc---------cceEEccCCCcccccchhhcCC----------CCccccccccceee
Q 026347 190 PDLCVICLEQE---------YNAVFVPCGHMCCCIICSWHLT----------NCPLCRRRIDQVVR 236 (240)
Q Consensus 190 ~~~C~iC~~~~---------~~~~~~pCgH~~~C~~C~~~~~----------~CpiCR~~i~~~~~ 236 (240)
+..|.||++.. +..++.+|+|.| |..|+..|. .||+||..+..+.+
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 45899999863 235778999999 999998872 39999999887644
No 20
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=6.3e-07 Score=76.09 Aligned_cols=43 Identities=35% Similarity=0.875 Sum_probs=37.4
Q ss_pred cccceeccccccceEEccCCCcccccchhhc-C-----CCCccccccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWH-L-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~-----~~CpiCR~~i~~ 233 (240)
+..|++|++.+..+..+||||+| |+.|+.. | ..||+||+.+..
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhccc
Confidence 45799999999999999999999 9999877 4 259999998754
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.14 E-value=6.6e-07 Score=55.15 Aligned_cols=34 Identities=47% Similarity=1.112 Sum_probs=30.1
Q ss_pred ceeccccccceE-EccCCCcccccchhhcC------CCCccc
Q 026347 193 CVICLEQEYNAV-FVPCGHMCCCIICSWHL------TNCPLC 227 (240)
Q Consensus 193 C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~------~~CpiC 227 (240)
|.||++...+.. +++|||.| |..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence 789999999988 99999998 99998765 379987
No 22
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.9e-06 Score=73.77 Aligned_cols=43 Identities=30% Similarity=0.835 Sum_probs=33.9
Q ss_pred cccccceeccccc-------------cceEEccCCCcccccchhhcC----CCCccccccc
Q 026347 188 VMPDLCVICLEQE-------------YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRI 231 (240)
Q Consensus 188 ~~~~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i 231 (240)
.++..|.||++.- ..+.=+||||.. --.|...| ++||+||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence 3455899999971 223568999998 78999887 6999999984
No 23
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.3e-07 Score=87.01 Aligned_cols=46 Identities=30% Similarity=0.683 Sum_probs=40.1
Q ss_pred cceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc--eeecc
Q 026347 192 LCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ--VVRTF 238 (240)
Q Consensus 192 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~--~~~~~ 238 (240)
.|++|-++++++++..|||+| |..|.... .+||.|..++.. +.+||
T Consensus 645 kCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 645 KCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred eCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 899999999999999999999 99998764 699999998865 45544
No 24
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.08 E-value=1.3e-06 Score=54.02 Aligned_cols=39 Identities=46% Similarity=1.024 Sum_probs=30.8
Q ss_pred cceeccccccceEE-ccCCCcccccchhhcC-----CCCccccccc
Q 026347 192 LCVICLEQEYNAVF-VPCGHMCCCIICSWHL-----TNCPLCRRRI 231 (240)
Q Consensus 192 ~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CpiCR~~i 231 (240)
.|.||++...+.+. .+|||.+ |..|...+ ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence 48999999855544 4599999 99998754 4799999764
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=1.4e-06 Score=79.27 Aligned_cols=45 Identities=29% Similarity=0.637 Sum_probs=38.9
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
+....|.||.+...+++++||||.| |..|+..+ ..||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence 3455999999999999999999999 99999764 479999998764
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.01 E-value=2.4e-06 Score=57.51 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=36.9
Q ss_pred cceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 192 LCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 192 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
.|+||.+...+++.+||||.+ |..|+..+ ..||+|+.++..
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCCh
Confidence 699999999999999999999 99999876 479999998843
No 27
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.00 E-value=2.1e-06 Score=51.19 Aligned_cols=34 Identities=44% Similarity=1.150 Sum_probs=29.9
Q ss_pred ceeccccccceEEccCCCcccccchhhcC-----CCCccc
Q 026347 193 CVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLC 227 (240)
Q Consensus 193 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiC 227 (240)
|.||++....++++||||.+ |..|...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence 78999999999999999998 99999755 469987
No 28
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.83 E-value=4e-06 Score=74.95 Aligned_cols=47 Identities=34% Similarity=0.809 Sum_probs=41.1
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC------CCCccccccccceee
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQVVR 236 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CpiCR~~i~~~~~ 236 (240)
.-.+|.||-++.+++.+-||||+- |..|...| +.||.||..|.+.-+
T Consensus 368 TFeLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred hHHHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 335999999999999999999998 99999888 379999999987543
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.77 E-value=5.9e-06 Score=51.61 Aligned_cols=27 Identities=41% Similarity=0.920 Sum_probs=18.1
Q ss_pred ceeccccccc----eEEccCCCcccccchhhcC
Q 026347 193 CVICLEQEYN----AVFVPCGHMCCCIICSWHL 221 (240)
Q Consensus 193 C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~ 221 (240)
|+||.+ ..+ +++|||||.+ |..|..++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE-EHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHH
Confidence 889998 777 8999999999 99999876
No 30
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.67 E-value=1.4e-05 Score=55.76 Aligned_cols=36 Identities=42% Similarity=0.945 Sum_probs=27.8
Q ss_pred cceeccccc-------------cceEEccCCCcccccchhhcC----CCCcccc
Q 026347 192 LCVICLEQE-------------YNAVFVPCGHMCCCIICSWHL----TNCPLCR 228 (240)
Q Consensus 192 ~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~----~~CpiCR 228 (240)
.|.||++.. ..++..+|||.| ...|+.+| ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence 499999865 223556899999 89999877 5899997
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.67 E-value=1.2e-05 Score=69.17 Aligned_cols=44 Identities=27% Similarity=0.501 Sum_probs=38.2
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----CCCcccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRID 232 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~ 232 (240)
+....|-||-...+.+++++|||.| |.-|+... +.||+||.+..
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHH
Confidence 4456899999999999999999999 99999764 68999997653
No 32
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.7e-05 Score=68.67 Aligned_cols=43 Identities=28% Similarity=0.650 Sum_probs=35.7
Q ss_pred cccceecccccc---ceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEY---NAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
.-.|+||++++. ..+++||.|.| ...|...| ..||+||.+|..
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCCC
Confidence 358999999763 36789999999 78999988 389999998753
No 33
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.1e-05 Score=68.37 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=38.8
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
++++|+||+..+.+++|.||+|.- |..|+.+- +.|-.|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee
Confidence 356999999999999999999998 99999763 789999988764
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.57 E-value=1.6e-05 Score=69.86 Aligned_cols=44 Identities=27% Similarity=0.672 Sum_probs=38.7
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
+-..|-||.+=++.++++||+|.| |.-|+... +.||.|+.++..
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence 344899999999999999999999 99999765 689999988754
No 35
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00014 Score=69.43 Aligned_cols=43 Identities=35% Similarity=0.832 Sum_probs=36.8
Q ss_pred cccccceeccccccc-----eEEccCCCcccccchhhcC----CCCccccccc
Q 026347 188 VMPDLCVICLEQEYN-----AVFVPCGHMCCCIICSWHL----TNCPLCRRRI 231 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i 231 (240)
...+.|.||.+.-.. +..+||||.+ |..|...| ..||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence 345689999998777 7889999999 99999887 6999999843
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=3e-05 Score=66.83 Aligned_cols=40 Identities=40% Similarity=0.841 Sum_probs=35.4
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcCC----CCccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLT----NCPLCRR 229 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CpiCR~ 229 (240)
....|.||++....+.++||||.+ |..|+..+. .||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 455899999999999999999999 999998763 7999993
No 37
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.43 E-value=7.4e-05 Score=48.65 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=36.8
Q ss_pred cccceeccccccceEEccCCCcccccchhhcC--CCCccccccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CpiCR~~i~~ 233 (240)
...|+.|......-+++||||+. |..|..-. ..||+|-.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence 34799999998899999999999 99997544 689999999875
No 38
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.39 E-value=0.00015 Score=63.93 Aligned_cols=48 Identities=35% Similarity=0.746 Sum_probs=39.9
Q ss_pred CcccccceeccccccceEEccCCCcccccchhhcC------CCCcccccccccee
Q 026347 187 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQVV 235 (240)
Q Consensus 187 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CpiCR~~i~~~~ 235 (240)
.+++..|+||-+.-.-..++||+|.. |..|+.++ +.||+||..-+.++
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEE
Confidence 34456999999988888899999998 99999776 58999998766654
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.25 E-value=0.00014 Score=48.97 Aligned_cols=40 Identities=28% Similarity=0.718 Sum_probs=22.4
Q ss_pred ccceeccccccceE-EccCCCcccccchhhcC--CCCccccccc
Q 026347 191 DLCVICLEQEYNAV-FVPCGHMCCCIICSWHL--TNCPLCRRRI 231 (240)
Q Consensus 191 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~--~~CpiCR~~i 231 (240)
..|.+|.+-.+.++ +..|.|.| |..|+... ..||+|+.|-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B--TTTGGGGTTTB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccHH-HHHHhHHhcCCCCCCcCChH
Confidence 37999999999986 57999999 99999775 6899999775
No 40
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.14 E-value=0.00018 Score=50.19 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=33.9
Q ss_pred cccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
...|+||.+-..+++++||||.| +..|+..+ ..||+|++++..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45899999999999999999999 99999876 479999998876
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.95 E-value=0.00021 Score=58.47 Aligned_cols=47 Identities=28% Similarity=0.677 Sum_probs=39.1
Q ss_pred CCcccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 186 DRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 186 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
.+..+..|.||...+..+++..|||.| |..|+..- +.|-+|.+.--.
T Consensus 192 ~e~IPF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 192 GEKIPFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred CCCCceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhcc
Confidence 344577999999999999999999999 99998653 589999765443
No 42
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00056 Score=59.26 Aligned_cols=47 Identities=28% Similarity=0.752 Sum_probs=40.2
Q ss_pred CcccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccce
Q 026347 187 RVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 234 (240)
Q Consensus 187 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~ 234 (240)
+..+..|-||..-+.++|+..|||.| |..|+..- ..|++|-+.+.+.
T Consensus 238 ~~~Pf~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 238 ELLPFKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccCCccccccccccccchhhcCCcee-ehhhhccccccCCcceecccccccc
Confidence 34566899999999999999999999 99998653 5899999888764
No 43
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0005 Score=63.29 Aligned_cols=44 Identities=30% Similarity=0.723 Sum_probs=35.1
Q ss_pred ccccceecccc-----------------ccceEEccCCCcccccchhhcC----C-CCccccccccc
Q 026347 189 MPDLCVICLEQ-----------------EYNAVFVPCGHMCCCIICSWHL----T-NCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~-----------------~~~~~~~pCgH~~~C~~C~~~~----~-~CpiCR~~i~~ 233 (240)
....|+||+.. .++.+++||.|.+ -..|..+| + .||+||+++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCCC
Confidence 34579999963 2456788999999 78999887 3 79999998864
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00019 Score=63.56 Aligned_cols=44 Identities=30% Similarity=0.793 Sum_probs=36.4
Q ss_pred cccceeccccccceEEc-cCCCcccccchhhcC-----CCCccccccccce
Q 026347 190 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL-----TNCPLCRRRIDQV 234 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-----~~CpiCR~~i~~~ 234 (240)
.-.|.||++--+..+.+ -|.|.| |.+|+... ..||-||+...+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence 44899999988876655 599999 99999764 5899999988764
No 45
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.00079 Score=61.50 Aligned_cols=45 Identities=36% Similarity=0.808 Sum_probs=38.5
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
..+..|.||+.....++.+||||.+ |..|..+. ..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence 3456999999999999999999999 99996554 589999988764
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.46 E-value=0.0017 Score=59.22 Aligned_cols=41 Identities=29% Similarity=0.715 Sum_probs=31.9
Q ss_pred cccccceeccccccc----eEEccCCCcccccchhhcCC--CCccccc
Q 026347 188 VMPDLCVICLEQEYN----AVFVPCGHMCCCIICSWHLT--NCPLCRR 229 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~--~CpiCR~ 229 (240)
.+-+.|+||+++--. ++-.+|.|-|.| .|...|+ .||+||-
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~-~cl~~w~~~scpvcR~ 219 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHC-SCLMKWWDSSCPVCRY 219 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccch-HHHhhcccCcChhhhh
Confidence 344599999987543 244689999977 9999884 8999984
No 47
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.36 E-value=0.0016 Score=46.51 Aligned_cols=28 Identities=29% Similarity=0.749 Sum_probs=23.0
Q ss_pred EEccCCCcccccchhhcC-------CCCcccccccc
Q 026347 204 VFVPCGHMCCCIICSWHL-------TNCPLCRRRID 232 (240)
Q Consensus 204 ~~~pCgH~~~C~~C~~~~-------~~CpiCR~~i~ 232 (240)
++-.|+|.| ...|+.++ ..||+||++..
T Consensus 48 v~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence 555899999 78998776 47999999764
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0015 Score=58.62 Aligned_cols=46 Identities=30% Similarity=0.689 Sum_probs=37.1
Q ss_pred cccceeccccccceE-----E---ccCCCcccccchhhcC-----------CCCccccccccceee
Q 026347 190 PDLCVICLEQEYNAV-----F---VPCGHMCCCIICSWHL-----------TNCPLCRRRIDQVVR 236 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~-----~---~pCgH~~~C~~C~~~~-----------~~CpiCR~~i~~~~~ 236 (240)
+..|-||++...+.. + .+|.|.+ |..|+..| +.||.||.+...+.+
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 458999999866655 4 6799999 99999876 369999998877654
No 49
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0027 Score=54.61 Aligned_cols=47 Identities=26% Similarity=0.617 Sum_probs=37.3
Q ss_pred CCcccccceeccccccceEE-ccCCCcccccchhhcC---C---CCccccccccc
Q 026347 186 DRVMPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL---T---NCPLCRRRIDQ 233 (240)
Q Consensus 186 ~~~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~---~---~CpiCR~~i~~ 233 (240)
.......|++|-+.|..+.. .+|||.+ |+.|+..- . .||.|..++..
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cccCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcc
Confidence 33445589999999998855 4799999 99998753 2 89999988764
No 50
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.032 Score=48.02 Aligned_cols=46 Identities=22% Similarity=0.611 Sum_probs=35.3
Q ss_pred Ccccccceeccccccc----------eEEccCCCcccccchhhcC------CCCccccccccc
Q 026347 187 RVMPDLCVICLEQEYN----------AVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 233 (240)
Q Consensus 187 ~~~~~~C~iC~~~~~~----------~~~~pCgH~~~C~~C~~~~------~~CpiCR~~i~~ 233 (240)
..+++.|.||-...-. .--+.|+|+| -+.|+..| ++||.|+..|+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhhH
Confidence 3456699999765432 3347999999 79999887 589999998875
No 51
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.054 Score=47.85 Aligned_cols=51 Identities=24% Similarity=0.659 Sum_probs=36.3
Q ss_pred CcccccceeccccccceEEcc-CCCcccccchhhcC----CCCcccccc--ccceeecc
Q 026347 187 RVMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL----TNCPLCRRR--IDQVVRTF 238 (240)
Q Consensus 187 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~----~~CpiCR~~--i~~~~~~~ 238 (240)
..+...|++|+....++.++. -|-+| |+.|+... ..||+-..| +...+++|
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 345569999999888876655 48888 99998764 689985443 44455554
No 52
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.00 E-value=0.015 Score=50.39 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=37.1
Q ss_pred Ccccccceeccccc----cceEEccCCCcccccchhhcCC---CCccccccccc
Q 026347 187 RVMPDLCVICLEQE----YNAVFVPCGHMCCCIICSWHLT---NCPLCRRRIDQ 233 (240)
Q Consensus 187 ~~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~---~CpiCR~~i~~ 233 (240)
......|+|..... +.+.+.||||++ ++.++..++ .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhcccccccccCCcccc
Confidence 34456999998654 456677999999 999999886 79999999875
No 53
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.60 E-value=0.015 Score=51.39 Aligned_cols=43 Identities=30% Similarity=0.828 Sum_probs=35.8
Q ss_pred cccceeccccccceEEccC--CCcccccchhhcC-CCCccccccccce
Q 026347 190 PDLCVICLEQEYNAVFVPC--GHMCCCIICSWHL-TNCPLCRRRIDQV 234 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CpiCR~~i~~~ 234 (240)
-..|+||.+.-..+++ .| ||+. |..|...+ ..||.||.+|..+
T Consensus 48 lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSNKCPTCRLPIGNI 93 (299)
T ss_pred hccCchhhccCcccce-ecCCCcEe-hhhhhhhhcccCCccccccccH
Confidence 3489999999888877 56 7998 99999555 6999999999853
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.46 E-value=0.017 Score=52.95 Aligned_cols=47 Identities=32% Similarity=0.695 Sum_probs=39.3
Q ss_pred cccccceeccccccceEE-ccCCCcccccchhhcC----CCCcccccccccee
Q 026347 188 VMPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 235 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~ 235 (240)
+.+..|.+|.....+++- ..|||.| |..|...+ +.||.|+..+....
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchhh
Confidence 345689999999999988 4999999 99999876 48999988876543
No 55
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.29 E-value=0.0087 Score=58.20 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=32.2
Q ss_pred cceeccccccceE---EccCCCcccccchhhcC----CCCccccccccceee
Q 026347 192 LCVICLEQEYNAV---FVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 236 (240)
Q Consensus 192 ~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~ 236 (240)
.|.+|+....+-. -.+|+|.| |..|+..| .+||+||.-+..++.
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeee
Confidence 5666665554432 24899999 99999888 589999988877643
No 56
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.79 E-value=0.02 Score=56.04 Aligned_cols=41 Identities=32% Similarity=0.797 Sum_probs=35.0
Q ss_pred ccceeccccccceEEccCCCcccccchhhcC------CCCccccccccc
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 233 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CpiCR~~i~~ 233 (240)
..|.+|.+ ...+++++|||.+ |..|.... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHHH
Confidence 68999999 8888999999999 99998664 369999987654
No 57
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.022 Score=49.88 Aligned_cols=46 Identities=26% Similarity=0.652 Sum_probs=32.8
Q ss_pred ccccceeccccccc-eEEccCCCcccccchhhcC--CCCcccccccccee
Q 026347 189 MPDLCVICLEQEYN-AVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQVV 235 (240)
Q Consensus 189 ~~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CpiCR~~i~~~~ 235 (240)
.-..|.-|--.... -.++||.|+| |.+|+..- +.||.|--+|.++.
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPCkHvF-Cl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPCKHVF-CLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred ceEeecccCCcceeeecccccchhh-hhhhhhcCccccCcCcccHHHHHH
Confidence 34577777543332 2467999999 99998765 69999987776543
No 58
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.038 Score=50.22 Aligned_cols=31 Identities=32% Similarity=0.733 Sum_probs=25.3
Q ss_pred cccceecccccc---ceEEccCCCcccccchhhcC
Q 026347 190 PDLCVICLEQEY---NAVFVPCGHMCCCIICSWHL 221 (240)
Q Consensus 190 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~ 221 (240)
...|.||++... ..+++||+|++ |..|....
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY 217 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDY 217 (445)
T ss_pred cccceeeehhhcCcceeeecccchHH-HHHHHHHH
Confidence 447999998764 46889999999 99998653
No 59
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=92.40 E-value=0.051 Score=34.75 Aligned_cols=36 Identities=25% Similarity=0.729 Sum_probs=27.4
Q ss_pred cceeccc--cccceEEccCC-----CcccccchhhcC------CCCcccc
Q 026347 192 LCVICLE--QEYNAVFVPCG-----HMCCCIICSWHL------TNCPLCR 228 (240)
Q Consensus 192 ~C~iC~~--~~~~~~~~pCg-----H~~~C~~C~~~~------~~CpiCR 228 (240)
.|.||++ ...+..+.||. |.+ -..|..+| ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 3889986 55667788996 555 78999887 3799994
No 60
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.22 E-value=0.36 Score=35.40 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=22.1
Q ss_pred cccceeccccccc--eEEccCCCcccccchhh
Q 026347 190 PDLCVICLEQEYN--AVFVPCGHMCCCIICSW 219 (240)
Q Consensus 190 ~~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~ 219 (240)
...|.+|-....+ .++.||||.+ ...|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence 4479999876554 4556999998 788865
No 61
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.62 E-value=0.037 Score=48.29 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred cceeccccccc---eEEccCCCcccccchhh
Q 026347 192 LCVICLEQEYN---AVFVPCGHMCCCIICSW 219 (240)
Q Consensus 192 ~C~iC~~~~~~---~~~~pCgH~~~C~~C~~ 219 (240)
.|+||+..+.+ .+.++|-|.+.| .|..
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~H~-~Cla 146 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYMHF-ACLA 146 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHHHH-HHHH
Confidence 69999876654 567899999854 7854
No 62
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.50 E-value=0.058 Score=41.63 Aligned_cols=44 Identities=32% Similarity=0.768 Sum_probs=36.0
Q ss_pred cceeccccccceEEc-c---CCCcccccchhhcC-------CCCccccccccceee
Q 026347 192 LCVICLEQEYNAVFV-P---CGHMCCCIICSWHL-------TNCPLCRRRIDQVVR 236 (240)
Q Consensus 192 ~C~iC~~~~~~~~~~-p---CgH~~~C~~C~~~~-------~~CpiCR~~i~~~~~ 236 (240)
.|.||.+...+..|+ | ||-.. |..|+..+ +.||+|+.++.+.-.
T Consensus 82 eCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 82 ECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred eccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCccccccccccc
Confidence 799999999988887 2 88776 99998775 589999998876543
No 63
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.35 E-value=0.066 Score=55.58 Aligned_cols=46 Identities=26% Similarity=0.853 Sum_probs=34.2
Q ss_pred cccccceeccccc---cceEEccCCCcccccchhhcC--------------CCCccccccccce
Q 026347 188 VMPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL--------------TNCPLCRRRIDQV 234 (240)
Q Consensus 188 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~--------------~~CpiCR~~i~~~ 234 (240)
+.++.|.||+... .-++-+.|+|+| -..|...+ -.||+|.++|...
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3456899999864 345778999999 56665432 2699999999764
No 64
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.11 E-value=0.047 Score=51.14 Aligned_cols=41 Identities=22% Similarity=0.635 Sum_probs=34.9
Q ss_pred cccceeccccccceEEccCCCcccccchhhcC---------CCCccccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------TNCPLCRRRI 231 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------~~CpiCR~~i 231 (240)
.-.|-+|-+...+.+...|.|.| |.-|.... .+||.|-...
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence 34899999999999999999999 99998553 4899997543
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.10 E-value=0.11 Score=44.19 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=33.7
Q ss_pred ccceeccccccc----eEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 191 DLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 191 ~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
..|+||.+.-.+ +++-||||++ |.+|...+ ..||+|-.+...
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence 489999876554 4566999999 99999887 479999877643
No 66
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.84 E-value=0.17 Score=45.09 Aligned_cols=43 Identities=37% Similarity=0.960 Sum_probs=30.6
Q ss_pred cccceecccccc--ceEEc--cCCCcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEY--NAVFV--PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~--~~~~~--pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
++.|+.|++..- +--|. |||... |.-|+..+ .+||-||...+.
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhccc
Confidence 446999998643 23344 567776 89998765 489999987654
No 67
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=87.56 E-value=0.15 Score=35.12 Aligned_cols=41 Identities=24% Similarity=0.615 Sum_probs=19.0
Q ss_pred cceecccccc-c---eEE----ccCCCcccccchhhcC---------------CCCccccccccc
Q 026347 192 LCVICLEQEY-N---AVF----VPCGHMCCCIICSWHL---------------TNCPLCRRRIDQ 233 (240)
Q Consensus 192 ~C~iC~~~~~-~---~~~----~pCgH~~~C~~C~~~~---------------~~CpiCR~~i~~ 233 (240)
.|.||+...- . +.+ -.|++.+ -..|...| ..||.|+++|.-
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 6999997643 1 222 1577777 67887665 159999999863
No 68
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.94 E-value=0.14 Score=51.17 Aligned_cols=41 Identities=29% Similarity=0.651 Sum_probs=29.6
Q ss_pred cceecccccc-------ceEEccCCCcccccchhhcC------CCCccccccccc
Q 026347 192 LCVICLEQEY-------NAVFVPCGHMCCCIICSWHL------TNCPLCRRRIDQ 233 (240)
Q Consensus 192 ~C~iC~~~~~-------~~~~~pCgH~~~C~~C~~~~------~~CpiCR~~i~~ 233 (240)
.|+|||.--. .-..-.|.|-| ...|...| .+||+||..|+-
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCcccccccc
Confidence 6999997422 11122588998 78998887 489999988763
No 69
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.15 E-value=1 Score=34.97 Aligned_cols=39 Identities=33% Similarity=0.776 Sum_probs=23.6
Q ss_pred ccccceecccc-ccceEEccCCCcc------cccchhhcC--------CCCccccccc
Q 026347 189 MPDLCVICLEQ-EYNAVFVPCGHMC------CCIICSWHL--------TNCPLCRRRI 231 (240)
Q Consensus 189 ~~~~C~iC~~~-~~~~~~~pCgH~~------~C~~C~~~~--------~~CpiCR~~i 231 (240)
+...|-||... +.+ -|||.| +|..|--+. +.|-+|+...
T Consensus 64 ddatC~IC~KTKFAD----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcchhhhhhccccc----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 34589999853 233 488886 255554322 4688887543
No 70
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=86.00 E-value=0.14 Score=45.38 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=36.9
Q ss_pred cccceeccccccceE-EccCCCcccccchhhcC----CCCccccccccceee
Q 026347 190 PDLCVICLEQEYNAV-FVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 236 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~ 236 (240)
...|.+|-.=..++. +.-|-|-| |..|+... ..||.|...|....+
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCccc
Confidence 448999988887765 45799999 99998654 689999998877643
No 71
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=85.98 E-value=0.57 Score=41.38 Aligned_cols=47 Identities=4% Similarity=-0.183 Sum_probs=40.1
Q ss_pred ccceeccccccceEEccCCCcccccchhhcC--CCCccccccccceeec
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CpiCR~~i~~~~~~ 237 (240)
..|.+|-.+--..+..||+|...|..|+..- +.||.|....-..++|
T Consensus 344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 344 LKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred cccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 4899999999999999999999999998743 6999998777666665
No 72
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=85.40 E-value=0.32 Score=32.12 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=24.6
Q ss_pred cccccceeccccccceEE-ccCCCcccccchhhcC------CCCcc
Q 026347 188 VMPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL------TNCPL 226 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~------~~Cpi 226 (240)
.....|+|.+....+++. ..|||.| ....+.++ ..||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence 345689999999999977 4899999 77887665 26888
No 73
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=85.34 E-value=0.29 Score=31.17 Aligned_cols=38 Identities=34% Similarity=0.876 Sum_probs=15.7
Q ss_pred ceeccccc--cceEEcc--CCCcccccchhhcC-----CCCccccccc
Q 026347 193 CVICLEQE--YNAVFVP--CGHMCCCIICSWHL-----TNCPLCRRRI 231 (240)
Q Consensus 193 C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~-----~~CpiCR~~i 231 (240)
|++|.+.. ++..|.| ||+.. |..|...+ ..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence 34444433 2334555 66776 99997655 3799999875
No 74
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=84.92 E-value=0.56 Score=42.47 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=12.6
Q ss_pred cccceeccccccceEEc
Q 026347 190 PDLCVICLEQEYNAVFV 206 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~ 206 (240)
.+.|.-|+....++.+.
T Consensus 271 ~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 271 LEPCIGCMQAQPNVKLV 287 (358)
T ss_pred cCCccccccCCCCcEEE
Confidence 44788888888777665
No 75
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=84.79 E-value=0.28 Score=44.54 Aligned_cols=43 Identities=28% Similarity=0.727 Sum_probs=0.0
Q ss_pred cccceecccc-------------------ccceEEccCCCcccccchhhcC-------------CCCccccccccc
Q 026347 190 PDLCVICLEQ-------------------EYNAVFVPCGHMCCCIICSWHL-------------TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~-------------------~~~~~~~pCgH~~~C~~C~~~~-------------~~CpiCR~~i~~ 233 (240)
...|++|+.. +-..+|-||||++ =...+.-| ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 4589999852 2334678999998 34444333 269999999875
No 76
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.17 E-value=0.33 Score=42.51 Aligned_cols=39 Identities=33% Similarity=0.682 Sum_probs=31.9
Q ss_pred cccceeccccccceEEcc-CCCcccccchhhcC-----CCCccccc
Q 026347 190 PDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL-----TNCPLCRR 229 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~-----~~CpiCR~ 229 (240)
...|..|-.-.++++-+| |+|.| |.+|+... ..||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence 358999988888887775 78998 99999743 58999976
No 77
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=82.85 E-value=2.8 Score=31.73 Aligned_cols=40 Identities=25% Similarity=0.519 Sum_probs=26.4
Q ss_pred cccceecccccc-----ceEEccCCCcccccchhhcC-----CCCcccccc
Q 026347 190 PDLCVICLEQEY-----NAVFVPCGHMCCCIICSWHL-----TNCPLCRRR 230 (240)
Q Consensus 190 ~~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~ 230 (240)
...|..|...+. ...-..|+|.+ |..|.... +.|.+|...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~V-C~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRV-CKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEE-ETTSEEETSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccc-cCccCCcCCCCCCEEChhhHHH
Confidence 458999987542 34556788888 89997543 468888653
No 78
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=80.84 E-value=0.39 Score=37.31 Aligned_cols=30 Identities=33% Similarity=0.658 Sum_probs=24.5
Q ss_pred ccceeccccccc---eEEccCC------CcccccchhhcC
Q 026347 191 DLCVICLEQEYN---AVFVPCG------HMCCCIICSWHL 221 (240)
Q Consensus 191 ~~C~iC~~~~~~---~~~~pCg------H~~~C~~C~~~~ 221 (240)
..|.||+++-.+ +|.++|| |++ |..|..+|
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw 65 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRW 65 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHH
Confidence 369999997665 6778888 667 99999988
No 79
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=79.88 E-value=1 Score=39.90 Aligned_cols=43 Identities=26% Similarity=0.640 Sum_probs=27.0
Q ss_pred cccceeccccc-------------------cceEEccCCCcccccchhhcC-------------CCCccccccccc
Q 026347 190 PDLCVICLEQE-------------------YNAVFVPCGHMCCCIICSWHL-------------TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~-------------------~~~~~~pCgH~~~C~~C~~~~-------------~~CpiCR~~i~~ 233 (240)
...|++|+..- -.-.|-||||+|. ..=..=| ..||.|-+..+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~s-ekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCS-EKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccc-hhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 45899998632 2235679999972 2222111 269999887765
No 80
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=79.37 E-value=0.4 Score=40.74 Aligned_cols=39 Identities=26% Similarity=0.678 Sum_probs=27.1
Q ss_pred cccceeccccc---cceEE--cc-CCCcccccchhhcC-----CCCc--cccc
Q 026347 190 PDLCVICLEQE---YNAVF--VP-CGHMCCCIICSWHL-----TNCP--LCRR 229 (240)
Q Consensus 190 ~~~C~iC~~~~---~~~~~--~p-CgH~~~C~~C~~~~-----~~Cp--iCR~ 229 (240)
+..|++|.... .++.+ -| |-|.. |.+|..++ -.|| -|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence 34899997532 22333 26 99998 99999876 3799 7753
No 81
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=78.75 E-value=0.84 Score=28.87 Aligned_cols=42 Identities=19% Similarity=0.615 Sum_probs=23.0
Q ss_pred cceeccccccceEEccCCCcccccchhhcC----CCCcccccccccee
Q 026347 192 LCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVV 235 (240)
Q Consensus 192 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~ 235 (240)
.|.-|.-..+.. +.|.--+.|-.|...+ ..||+|..++...+
T Consensus 4 nCKsCWf~~k~L--i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGL--IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSE--EE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCe--eeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 467776555554 4688666799999877 47999998877654
No 82
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=78.38 E-value=0.96 Score=31.85 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=22.6
Q ss_pred EEccCCCcccccchhhcC----CCCcccccccc
Q 026347 204 VFVPCGHMCCCIICSWHL----TNCPLCRRRID 232 (240)
Q Consensus 204 ~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~ 232 (240)
+.--|.|.| -..|+.++ ..||++|++..
T Consensus 50 ~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 50 VWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred EEEecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence 334799999 78999887 37999998764
No 83
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.25 E-value=0.53 Score=45.33 Aligned_cols=40 Identities=38% Similarity=0.764 Sum_probs=30.7
Q ss_pred ccccceeccccc----cceEEccCCCcccccchhhcC--CCCcccccc
Q 026347 189 MPDLCVICLEQE----YNAVFVPCGHMCCCIICSWHL--TNCPLCRRR 230 (240)
Q Consensus 189 ~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~--~~CpiCR~~ 230 (240)
+-..|.||+..+ ..++.+-|||.. |..|.+.+ ..|| |...
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn~scp-~~~D 55 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYNASCP-TKRD 55 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhhccCC-CCcc
Confidence 345799997654 457888999998 99999887 5898 6543
No 84
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=73.31 E-value=1.3 Score=40.26 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=32.9
Q ss_pred cccccceecccc----ccceEEccCCCcccccchhhcC------CCCcccccccc
Q 026347 188 VMPDLCVICLEQ----EYNAVFVPCGHMCCCIICSWHL------TNCPLCRRRID 232 (240)
Q Consensus 188 ~~~~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~------~~CpiCR~~i~ 232 (240)
+.+--|-.|-+. +.+.-.+||.|.| -..|...+ +.||.||+-+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence 445579999653 4556678999999 78998854 58999995444
No 85
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=73.18 E-value=1.6 Score=38.57 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=37.9
Q ss_pred cccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccceeec
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~~~~~ 237 (240)
.-.|++|+.+......++|+|-.+|..|.... +.|++|-..+.+...+
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 34799999999999999999999999986443 4699997666554443
No 86
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=73.02 E-value=1.9 Score=27.52 Aligned_cols=38 Identities=21% Similarity=0.481 Sum_probs=17.0
Q ss_pred cceeccccccceE-EccCCCcccccchhh--------cCCCCcccccc
Q 026347 192 LCVICLEQEYNAV-FVPCGHMCCCIICSW--------HLTNCPLCRRR 230 (240)
Q Consensus 192 ~C~iC~~~~~~~~-~~pCgH~~~C~~C~~--------~~~~CpiCR~~ 230 (240)
.|++....-..++ -..|.|.- |.+=.. ..+.||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 5777777766654 45899997 655421 12589999864
No 87
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=0.62 Score=32.51 Aligned_cols=25 Identities=28% Similarity=0.683 Sum_probs=20.0
Q ss_pred cCCCcccccchhhcC-------CCCcccccccc
Q 026347 207 PCGHMCCCIICSWHL-------TNCPLCRRRID 232 (240)
Q Consensus 207 pCgH~~~C~~C~~~~-------~~CpiCR~~i~ 232 (240)
-|.|.| -.-|+..+ ..||+||+...
T Consensus 50 ~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAF-HAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHH-HHHHHHHHhcCccccccCCcchheeE
Confidence 689998 67898876 37999998753
No 88
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.20 E-value=1.4 Score=38.40 Aligned_cols=30 Identities=37% Similarity=0.807 Sum_probs=26.2
Q ss_pred cccceeccccccceEEccCC----Ccccccchhhc
Q 026347 190 PDLCVICLEQEYNAVFVPCG----HMCCCIICSWH 220 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~ 220 (240)
...|.+|.++-.+.-|+-|- |.| |+.|...
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSRe 301 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRE 301 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccce-ecccCHH
Confidence 45899999999999999996 888 9999754
No 89
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=70.01 E-value=1.2 Score=43.40 Aligned_cols=42 Identities=31% Similarity=0.732 Sum_probs=35.5
Q ss_pred ccceeccccccceEEccCCCcccccchhhcC-------CCCccccccccc
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 233 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CpiCR~~i~~ 233 (240)
..|.||.......+.+.|.|.+ |..|.... ..||+|+..++.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhhh
Confidence 3699999999999999999999 89997543 379999977765
No 90
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=69.87 E-value=2.1 Score=34.17 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=30.5
Q ss_pred ccccceeccccccceEEccCCCcc----cccchhhcC------CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMC----CCIICSWHL------TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~----~C~~C~~~~------~~CpiCR~~i~~ 233 (240)
.+..|-||++.... ..-||.... .-.+|..+| ..|++|+.+..-
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 45589999988654 345776532 245688776 489999987743
No 91
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=69.80 E-value=33 Score=24.62 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026347 127 LTIFGTFLIAKRAIHYILQRKRRWELHR 154 (240)
Q Consensus 127 ~~~~gv~ll~~~~~r~~~~~r~~~~~~~ 154 (240)
++.+.+++++|..++-++.+++-.+++.
T Consensus 10 ~~~v~~~i~~y~~~k~~ka~~~~~kL~~ 37 (87)
T PF10883_consen 10 VGAVVALILAYLWWKVKKAKKQNAKLQK 37 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666666655555344443
No 92
>PHA03096 p28-like protein; Provisional
Probab=69.75 E-value=1.6 Score=38.35 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=23.4
Q ss_pred ccceecccccc--------ceEEccCCCcccccchhhcC
Q 026347 191 DLCVICLEQEY--------NAVFVPCGHMCCCIICSWHL 221 (240)
Q Consensus 191 ~~C~iC~~~~~--------~~~~~pCgH~~~C~~C~~~~ 221 (240)
..|-||+++.. ..++-.|.|.| |..|+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHH
Confidence 36999998643 34566899999 99999876
No 93
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=68.72 E-value=31 Score=22.84 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026347 140 IHYILQRKRRWELHRRVLAAAA 161 (240)
Q Consensus 140 ~r~~~~~r~~~~~~~~~~~~~~ 161 (240)
.++++.+++-+++++++++.++
T Consensus 41 ~~~~~~r~~~~~~~k~l~~le~ 62 (68)
T PF06305_consen 41 PSRLRLRRRIRRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445455555555555554433
No 94
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.65 E-value=2.7 Score=36.09 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=32.4
Q ss_pred cccccceecc----ccccceEEccCCCcccccchhhcC--CCCccccccccc
Q 026347 188 VMPDLCVICL----EQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~----~~~~~~~~~pCgH~~~C~~C~~~~--~~CpiCR~~i~~ 233 (240)
.....|+|-- ..++.+.+++|||++ =+.-..++ ..|++|.+++..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~-SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVF-SERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceec-cHHHHHHhhhccccccCCcccc
Confidence 3455888864 346678889999999 44555555 489999988754
No 95
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=66.25 E-value=17 Score=22.17 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026347 128 TIFGTFLIAKRAIHYILQRK 147 (240)
Q Consensus 128 ~~~gv~ll~~~~~r~~~~~r 147 (240)
+++|+.++...++|.|+.|+
T Consensus 18 glv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 18 GLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566667667777776654
No 96
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=63.74 E-value=3.1 Score=41.34 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=33.7
Q ss_pred Ccccccceecccc--ccceEEccCCCc----ccccchhhcC------CCCcccccccc
Q 026347 187 RVMPDLCVICLEQ--EYNAVFVPCGHM----CCCIICSWHL------TNCPLCRRRID 232 (240)
Q Consensus 187 ~~~~~~C~iC~~~--~~~~~~~pCgH~----~~C~~C~~~~------~~CpiCR~~i~ 232 (240)
.++...|.||... +.++.+.||.+. +...+|...| ++|-+|..++.
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 3344689999854 567899999865 3466788776 58999987764
No 97
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.49 E-value=3.1 Score=37.93 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=29.1
Q ss_pred ccceeccccccc---eEEccCCCcccccchhhcCC-------CCccccccc
Q 026347 191 DLCVICLEQEYN---AVFVPCGHMCCCIICSWHLT-------NCPLCRRRI 231 (240)
Q Consensus 191 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~-------~CpiCR~~i 231 (240)
..|+|=.+.-.+ ++-+.|||+. |.+-+.++. +||.|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCccc
Confidence 378887665433 6788999998 888777662 699996543
No 98
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=60.61 E-value=5 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=11.1
Q ss_pred CCCCccccccccceee
Q 026347 221 LTNCPLCRRRIDQVVR 236 (240)
Q Consensus 221 ~~~CpiCR~~i~~~~~ 236 (240)
-..||+|..+-..+..
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 3589999887665543
No 99
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=58.72 E-value=5.8 Score=34.78 Aligned_cols=46 Identities=20% Similarity=0.512 Sum_probs=23.6
Q ss_pred cccceeccccccceEEccC---C--CcccccchhhcC----CCCccccccccceee
Q 026347 190 PDLCVICLEQEYNAVFVPC---G--HMCCCIICSWHL----TNCPLCRRRIDQVVR 236 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pC---g--H~~~C~~C~~~~----~~CpiCR~~i~~~~~ 236 (240)
...|+||-..+.-.++..= | |+. |.-|...| ..||.|-..-.....
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~-Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~ 226 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLH-CSLCGTEWRFVRIKCPYCGNTDHEKLE 226 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEE-ETTT--EEE--TTS-TTT---SS-EEE
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEE-cCCCCCeeeecCCCCcCCCCCCCccee
Confidence 4689999999998887764 4 444 99999888 389999866554443
No 100
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=57.30 E-value=34 Score=24.18 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=17.9
Q ss_pred ecccCCCceeEEeeeEEecCCCCeEEe
Q 026347 66 ERLLPTGTSLTVVGEAVKDDIGTVRIQ 92 (240)
Q Consensus 66 E~~L~~g~~lt~vGe~~~d~~g~~~iq 92 (240)
...+++|+.+-+.|.+ ..-.|.+.|.
T Consensus 45 ~~~~~~g~~v~v~G~v-~~~~g~~ql~ 70 (95)
T cd04478 45 VEPIEEGTYVRVFGNL-KSFQGKKSIM 70 (95)
T ss_pred ccccccCCEEEEEEEE-cccCCeeEEE
Confidence 4568899999999996 4335555443
No 101
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.78 E-value=3.8 Score=30.30 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=19.8
Q ss_pred ccCCCcccccchhhcC----CCCcccccc
Q 026347 206 VPCGHMCCCIICSWHL----TNCPLCRRR 230 (240)
Q Consensus 206 ~pCgH~~~C~~C~~~~----~~CpiCR~~ 230 (240)
-.|.|.| -.-|+.++ ..||+|.+.
T Consensus 79 G~CNHaF-H~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHAF-HFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence 4799999 68899887 489999764
No 102
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=55.60 E-value=3.9 Score=37.42 Aligned_cols=29 Identities=31% Similarity=0.645 Sum_probs=0.0
Q ss_pred ceEEccCCCcccccchhh------cCCCCcccccc
Q 026347 202 NAVFVPCGHMCCCIICSW------HLTNCPLCRRR 230 (240)
Q Consensus 202 ~~~~~pCgH~~~C~~C~~------~~~~CpiCR~~ 230 (240)
-.+++.|||+.--..--. ....||+||+.
T Consensus 303 P~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 303 PWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------
T ss_pred ceeeccccceeeecccccccccccccccCCCcccc
Confidence 357899999863322211 13589999863
No 103
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=54.99 E-value=7.1 Score=22.76 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=10.4
Q ss_pred CCCcccccccccee
Q 026347 222 TNCPLCRRRIDQVV 235 (240)
Q Consensus 222 ~~CpiCR~~i~~~~ 235 (240)
..||+|.++-..+.
T Consensus 19 ~~CP~Cg~~~~~F~ 32 (34)
T cd00729 19 EKCPICGAPKEKFE 32 (34)
T ss_pred CcCcCCCCchHHcE
Confidence 48999988765554
No 104
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=53.90 E-value=3.1 Score=36.35 Aligned_cols=45 Identities=29% Similarity=0.610 Sum_probs=32.4
Q ss_pred cceecccc----ccceEEccCCCcccccchhhcC----CCCccccccccceeecc
Q 026347 192 LCVICLEQ----EYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTF 238 (240)
Q Consensus 192 ~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~~~ 238 (240)
.|++|.+. ...+..++|||.-. ..|...+ -.||+|.. +.....+|
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~~~ 212 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSHYF 212 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHHHH
Confidence 49999764 45577889999984 7777665 38999988 65544443
No 105
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.60 E-value=16 Score=36.75 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=33.4
Q ss_pred ccceeccccccce-EEccCCCcccccchhhc-CCCCccccccccceeec
Q 026347 191 DLCVICLEQEYNA-VFVPCGHMCCCIICSWH-LTNCPLCRRRIDQVVRT 237 (240)
Q Consensus 191 ~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~-~~~CpiCR~~i~~~~~~ 237 (240)
..|..|-..---+ |...|||.+ -..|... ...||-|+....++...
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsy-HqhC~e~~~~~CP~C~~e~~~~m~l 888 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSY-HQHCLEDKEDKCPKCLPELRGVMDL 888 (933)
T ss_pred eeecccCCccccceeeeecccHH-HHHhhccCcccCCccchhhhhhHHH
Confidence 4799997665543 556899999 7888874 46899998865555443
No 106
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=53.30 E-value=4 Score=28.08 Aligned_cols=39 Identities=23% Similarity=0.568 Sum_probs=18.5
Q ss_pred ccceeccccccceEEccCCCcccccchhhcC---CCCccccccccce
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL---TNCPLCRRRIDQV 234 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CpiCR~~i~~~ 234 (240)
..|+.|...-...- ||.. |..|.... ..||-|.+++..+
T Consensus 2 ~~CP~C~~~L~~~~----~~~~-C~~C~~~~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYH-CEACQKDYKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEET----TEEE-ETTT--EEEEEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEeC----CEEE-CccccccceecccCCCcccHHHHH
Confidence 36888875522211 4444 88887765 3788888877654
No 107
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=53.10 E-value=7.5 Score=28.13 Aligned_cols=37 Identities=24% Similarity=0.676 Sum_probs=28.7
Q ss_pred cccceeccccccceEEccCCCcccccchhhcCCCCcccccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRID 232 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~i~ 232 (240)
...|.+|-...... ||-+ |..|+..-..|.+|-..|.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~Y-Cq~CAYkkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKY-CQTCAYKKGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCcc-ChhhhcccCcccccCCeec
Confidence 34899998654332 6666 9999999999999998884
No 108
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=51.50 E-value=26 Score=24.86 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=1.6
Q ss_pred HHHHHHHHHHHHHH
Q 026347 142 YILQRKRRWELHRR 155 (240)
Q Consensus 142 ~~~~~r~~~~~~~~ 155 (240)
.|++.++|++..+.
T Consensus 29 eYrk~~rqrkId~l 42 (81)
T PF00558_consen 29 EYRKIKRQRKIDRL 42 (81)
T ss_dssp ----------CHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 33343444444433
No 109
>PRK00523 hypothetical protein; Provisional
Probab=50.88 E-value=60 Score=22.45 Aligned_cols=27 Identities=11% Similarity=-0.077 Sum_probs=17.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 026347 119 WYKYASFGLTIFGTFLIAKRAIHYILQ 145 (240)
Q Consensus 119 ~~~~~~i~~~~~gv~ll~~~~~r~~~~ 145 (240)
.|..+.++.+++|++.-++.+++++.+
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556667777777777777644
No 110
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=50.42 E-value=71 Score=22.95 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=24.8
Q ss_pred eEEeCCCCCCeEeecCCHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026347 89 VRIQRPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIFGTFLIAKRAIHYILQRK 147 (240)
Q Consensus 89 ~~iq~P~~g~~~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~gv~ll~~~~~r~~~~~r 147 (240)
+.+++|+.| ...+.-+.++......- .+.++++.+.+.+......+.-|.+-|
T Consensus 2 P~~e~Ps~g----~~~~~~~~i~~y~~d~~--~l~gLv~~a~afi~Va~~~i~~y~eir 54 (87)
T PF11190_consen 2 PTVEPPSSG----GGGGIMETIKGYAKDGV--LLLGLVLAAAAFIVVAKAAISTYNEIR 54 (87)
T ss_pred CCCCCCCCC----CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788877 44444444443332221 123333333344444555555555544
No 111
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.52 E-value=23 Score=27.11 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=13.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 026347 117 ARWYKYASFGLTIFGTFLIAKRAIH 141 (240)
Q Consensus 117 ~r~~~~~~i~~~~~gv~ll~~~~~r 141 (240)
+-.+..+++++|++|+++++++++|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666655444443
No 112
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=48.77 E-value=91 Score=24.29 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=15.2
Q ss_pred cCCHHHHHHHHhhHHHHHHHHHhhHHHHH
Q 026347 103 PKTIDELIENLGKWARWYKYASFGLTIFG 131 (240)
Q Consensus 103 ~~s~~~Li~~l~~~~r~~~~~~i~~~~~g 131 (240)
..+..++...+......+.+.+++.+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~G~~i~~~v~ 131 (154)
T PF09835_consen 103 LMHWSDLLESLWEFGLPFLLGSLILGIVL 131 (154)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556655555555545455555555543
No 113
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=48.42 E-value=9.2 Score=23.97 Aligned_cols=35 Identities=31% Similarity=0.722 Sum_probs=20.2
Q ss_pred ceeccccccc--eEEccCCCc----ccccchhhcC------CCCccc
Q 026347 193 CVICLEQEYN--AVFVPCGHM----CCCIICSWHL------TNCPLC 227 (240)
Q Consensus 193 C~iC~~~~~~--~~~~pCgH~----~~C~~C~~~~------~~CpiC 227 (240)
|-||++.... ..+.||+-. +.-..|+.+| .+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6678776443 567798743 2466788776 368877
No 114
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=48.32 E-value=11 Score=33.67 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=21.2
Q ss_pred ceEEccCCCccc--ccchhhcC----CCCccccccccceeec
Q 026347 202 NAVFVPCGHMCC--CIICSWHL----TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 202 ~~~~~pCgH~~~--C~~C~~~~----~~CpiCR~~i~~~~~~ 237 (240)
-.+++.|||+-- =+.|...- ..||+||. +..++++
T Consensus 316 P~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~-~gp~V~L 356 (429)
T KOG3842|consen 316 PWVYLNCGHVHGYHNWGVRENTGQRERECPMCRV-VGPYVPL 356 (429)
T ss_pred CeEEEeccccccccccccccccCcccCcCCeeee-ecceeee
Confidence 468899998842 23333222 58999975 3335544
No 115
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.37 E-value=9 Score=32.46 Aligned_cols=42 Identities=21% Similarity=0.444 Sum_probs=32.1
Q ss_pred ccceecccc--ccceEEccCCCcccccchhhcC------------CCCccccccccc
Q 026347 191 DLCVICLEQ--EYNAVFVPCGHMCCCIICSWHL------------TNCPLCRRRIDQ 233 (240)
Q Consensus 191 ~~C~iC~~~--~~~~~~~pCgH~~~C~~C~~~~------------~~CpiCR~~i~~ 233 (240)
..|..|-.. ..+.+-+-|-|+| -+.|.... -.||.|.+.|-.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlf-HW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLF-HWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcceeehhhhhH-HHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 368888653 4567778999999 89998654 279999988754
No 116
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=47.28 E-value=80 Score=20.70 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=20.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026347 118 RWYKYASFGLTIFGTFLIAKRAIHYILQRKRR 149 (240)
Q Consensus 118 r~~~~~~i~~~~~gv~ll~~~~~r~~~~~r~~ 149 (240)
|..-+..+++++.+..++.+..+.++...+++
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~ 46 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSYFKYNRRR 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677777777877777777655443
No 117
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=46.07 E-value=58 Score=25.35 Aligned_cols=15 Identities=13% Similarity=-0.099 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 026347 131 GTFLIAKRAIHYILQ 145 (240)
Q Consensus 131 gv~ll~~~~~r~~~~ 145 (240)
+++++++..+|++++
T Consensus 33 ~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 33 LLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHc
Confidence 344445555555544
No 118
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=45.81 E-value=29 Score=29.24 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=24.1
Q ss_pred CCCCeEeecCCHHHHHHHHhhHHHHHHHHHhhHHH
Q 026347 95 HKGPFYVSPKTIDELIENLGKWARWYKYASFGLTI 129 (240)
Q Consensus 95 ~~g~~~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~ 129 (240)
.+.||+-....+++........++.|+++++++++
T Consensus 16 ~~~~y~~a~~~weer~~~~~~~~~~w~~va~~~l~ 50 (228)
T PRK13872 16 PETPYQRAAQVWDERIGSARVQARNWRLMAFGCLA 50 (228)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888887777766644443333
No 119
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=45.66 E-value=13 Score=33.12 Aligned_cols=42 Identities=19% Similarity=0.492 Sum_probs=29.8
Q ss_pred cccccceeccccccceEEc---cCCCcc-cccchhhcCC----CCccccc
Q 026347 188 VMPDLCVICLEQEYNAVFV---PCGHMC-CCIICSWHLT----NCPLCRR 229 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~---pCgH~~-~C~~C~~~~~----~CpiCR~ 229 (240)
.....|+||-..|.-.++. .=|+++ .|.-|...|. .||.|..
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3456999999998765442 234332 3999988883 7999976
No 120
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=45.57 E-value=7.6 Score=38.65 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=27.5
Q ss_pred cceecccc----ccceEEccCCCcccccchhhcC----------CCCccccccccc
Q 026347 192 LCVICLEQ----EYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 233 (240)
Q Consensus 192 ~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~----------~~CpiCR~~i~~ 233 (240)
.|.+|... ...+.+-.|+|.+ |..|+..+ ..|+.|..-|..
T Consensus 101 ~C~~E~S~~~ds~~i~P~~~~~~~~-CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 101 VCEKEHSPDVDSSNICPVQTHVENQ-CPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred hhheecCCcccccCcCchhhhhhhh-hhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 56666655 2233344599999 99998765 268888765554
No 121
>PLN02189 cellulose synthase
Probab=45.44 E-value=13 Score=38.29 Aligned_cols=43 Identities=30% Similarity=0.695 Sum_probs=29.7
Q ss_pred cccceecccccc----ceEEccCC---CcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEY----NAVFVPCG---HMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~----~~~~~pCg---H~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
...|.||-+... --.|+.|. -- .|..|+.-- +.||.|+++..+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fp-vCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 448999998733 22456554 33 499998533 589999988764
No 122
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=45.40 E-value=34 Score=22.34 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=24.3
Q ss_pred eecccCCCceeEEeeeEEecCCCCeEEeCCC
Q 026347 65 IERLLPTGTSLTVVGEAVKDDIGTVRIQRPH 95 (240)
Q Consensus 65 ~E~~L~~g~~lt~vGe~~~d~~g~~~iq~P~ 95 (240)
....+++|+.+.+.|.+.. ..|.+.|..|.
T Consensus 42 ~~~~~~~G~~~~v~Gkv~~-~~~~~qi~~P~ 71 (75)
T cd04488 42 LKKQLPPGTRVRVSGKVKR-FRGGLQIVHPE 71 (75)
T ss_pred HHhcCCCCCEEEEEEEEee-cCCeeEEeCCc
Confidence 4567999999999999644 36789999885
No 123
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=44.88 E-value=45 Score=24.60 Aligned_cols=10 Identities=30% Similarity=0.757 Sum_probs=4.9
Q ss_pred HHHHHHHhhH
Q 026347 118 RWYKYASFGL 127 (240)
Q Consensus 118 r~~~~~~i~~ 127 (240)
.||+|+.+++
T Consensus 21 ~w~FWlv~~l 30 (102)
T PF11669_consen 21 LWYFWLVWVL 30 (102)
T ss_pred HHHHHHHHHH
Confidence 3555654333
No 124
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=43.96 E-value=32 Score=28.86 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=27.5
Q ss_pred CCCCeEeecCCHHHHHHHHhhHHHHHHHHHhhHHHH
Q 026347 95 HKGPFYVSPKTIDELIENLGKWARWYKYASFGLTIF 130 (240)
Q Consensus 95 ~~g~~~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~ 130 (240)
...||+-....+++.+......++.|++++++.+++
T Consensus 7 ~~~py~~a~~~w~er~g~~~~~~~~W~~~a~~~l~~ 42 (220)
T PRK13836 7 PDNPYLAARQEWNERYGSYVKAAAAWRIVGILGLTM 42 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788888889999988888888888877644443
No 125
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.71 E-value=11 Score=20.57 Aligned_cols=16 Identities=31% Similarity=0.825 Sum_probs=9.4
Q ss_pred ccchhhcC----CCCccccc
Q 026347 214 CIICSWHL----TNCPLCRR 229 (240)
Q Consensus 214 C~~C~~~~----~~CpiCR~ 229 (240)
|..|...+ +.||.|--
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CCCCcCCchhhcCcCCCCCC
Confidence 55665554 46777743
No 126
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=43.66 E-value=12 Score=33.29 Aligned_cols=42 Identities=19% Similarity=0.496 Sum_probs=29.8
Q ss_pred ccccceeccccccceEEcc----CCCcc-cccchhhcCC----CCcccccc
Q 026347 189 MPDLCVICLEQEYNAVFVP----CGHMC-CCIICSWHLT----NCPLCRRR 230 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~p----CgH~~-~C~~C~~~~~----~CpiCR~~ 230 (240)
....|+||-..+.-.++.. =|+++ .|.-|...|. .||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3458999999997654433 34332 3999998883 79999864
No 127
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=43.12 E-value=49 Score=28.26 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=23.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026347 121 KYASFGLTIFGTFLIAKRAIHYILQRKRRW 150 (240)
Q Consensus 121 ~~~~i~~~~~gv~ll~~~~~r~~~~~r~~~ 150 (240)
-|++.+++++|.++++..++.|++-+|.++
T Consensus 194 ~wla~~Lm~~G~fI~irsi~dY~rVKR~Er 223 (233)
T PF10176_consen 194 PWLAYILMAFGWFIFIRSIIDYWRVKRMER 223 (233)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888999999999999887666443
No 128
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=42.82 E-value=12 Score=24.00 Aligned_cols=21 Identities=43% Similarity=1.012 Sum_probs=12.5
Q ss_pred cCCCcccccchhh----cCCCCcccc
Q 026347 207 PCGHMCCCIICSW----HLTNCPLCR 228 (240)
Q Consensus 207 pCgH~~~C~~C~~----~~~~CpiCR 228 (240)
.|++.| |.+|.. .+-.||-|-
T Consensus 26 ~C~~~F-C~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHF-CIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B--HHHHHTTTTTS-SSSTT-
T ss_pred CCCCcc-ccCcChhhhccccCCcCCC
Confidence 578888 999974 346899984
No 129
>PRK01844 hypothetical protein; Provisional
Probab=42.63 E-value=82 Score=21.78 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=15.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Q 026347 122 YASFGLTIFGTFLIAKRAIHYILQ 145 (240)
Q Consensus 122 ~~~i~~~~~gv~ll~~~~~r~~~~ 145 (240)
.+.++.+++|++.-++.+++++.+
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556777777777777644
No 130
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=42.58 E-value=9 Score=24.60 Aligned_cols=10 Identities=60% Similarity=1.434 Sum_probs=3.2
Q ss_pred CCcccccccc
Q 026347 223 NCPLCRRRID 232 (240)
Q Consensus 223 ~CpiCR~~i~ 232 (240)
.||+|.++++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 3566655544
No 131
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=41.43 E-value=5.1 Score=21.91 Aligned_cols=9 Identities=44% Similarity=1.409 Sum_probs=7.0
Q ss_pred CCccccccc
Q 026347 223 NCPLCRRRI 231 (240)
Q Consensus 223 ~CpiCR~~i 231 (240)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 588887776
No 132
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.26 E-value=7.3 Score=35.76 Aligned_cols=30 Identities=27% Similarity=0.599 Sum_probs=20.8
Q ss_pred cccceeccc-cccc---eEEccCCCcccccchhhc
Q 026347 190 PDLCVICLE-QEYN---AVFVPCGHMCCCIICSWH 220 (240)
Q Consensus 190 ~~~C~iC~~-~~~~---~~~~pCgH~~~C~~C~~~ 220 (240)
...|.||+. .+.. ....-|+|.| |..|..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~f-C~~C~k~ 179 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRF-CKDCVKQ 179 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchh-hhHHhHH
Confidence 447999993 3222 1245799999 9999764
No 133
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.92 E-value=12 Score=32.27 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=27.1
Q ss_pred cccceeccccccceEEccCCCcccccchhhc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWH 220 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~ 220 (240)
-+.|..|+...+++++.|=||+| |.+|+..
T Consensus 43 FdcCsLtLqPc~dPvit~~Gylf-drEaILe 72 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYLF-DREAILE 72 (303)
T ss_pred cceeeeecccccCCccCCCCeee-eHHHHHH
Confidence 45899999999999999999999 9999754
No 134
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=40.85 E-value=12 Score=24.10 Aligned_cols=15 Identities=20% Similarity=0.705 Sum_probs=11.7
Q ss_pred CCCccccccccceee
Q 026347 222 TNCPLCRRRIDQVVR 236 (240)
Q Consensus 222 ~~CpiCR~~i~~~~~ 236 (240)
..|++|++||...+.
T Consensus 2 ~iCvvCK~Pi~~al~ 16 (53)
T PHA02610 2 KICVVCKQPIEKALV 16 (53)
T ss_pred ceeeeeCCchhhceE
Confidence 469999999987654
No 135
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=40.52 E-value=13 Score=24.19 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=11.3
Q ss_pred CCCcccccccccee
Q 026347 222 TNCPLCRRRIDQVV 235 (240)
Q Consensus 222 ~~CpiCR~~i~~~~ 235 (240)
..|.+|+++|....
T Consensus 2 ~~CvVCKqpi~~a~ 15 (54)
T PF10886_consen 2 EICVVCKQPIDDAL 15 (54)
T ss_pred CeeeeeCCccCcce
Confidence 46999999998754
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.04 E-value=18 Score=32.40 Aligned_cols=46 Identities=33% Similarity=0.895 Sum_probs=32.6
Q ss_pred cccceeccccc--cceEEc--cCCCcccccchhhcC----CCCccccccccceee
Q 026347 190 PDLCVICLEQE--YNAVFV--PCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 236 (240)
Q Consensus 190 ~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~ 236 (240)
+..|++|.+.. .+..++ ||+|.- |..|.... -.||.||.+...-..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~-~l~~~~t~~~~~~~~~~~rk~~~~~t~ 302 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRL-CLFCHKTISDGDGRCPGCRKPYERNTK 302 (327)
T ss_pred CCCCCCCCCcccccccccccccccccc-hhhhhhcccccCCCCCccCCccccCcc
Confidence 36899999843 233344 678884 88898766 489999988766433
No 137
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=39.23 E-value=1.2e+02 Score=20.49 Aligned_cols=20 Identities=15% Similarity=0.482 Sum_probs=12.8
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 026347 119 WYKYASFGLTIFGTFLIAKR 138 (240)
Q Consensus 119 ~~~~~~i~~~~~gv~ll~~~ 138 (240)
.|-|++++.+++.++++...
T Consensus 17 fyVWlA~~~tll~l~~l~v~ 36 (67)
T COG3114 17 FYVWLAVGMTLLPLAVLVVH 36 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45577777777766665443
No 138
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=38.69 E-value=14 Score=33.34 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=12.1
Q ss_pred cccccceeccccccce
Q 026347 188 VMPDLCVICLEQEYNA 203 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~ 203 (240)
+.+.+|+||-++.+-.
T Consensus 13 dl~ElCPVCGDkVSGY 28 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGY 28 (475)
T ss_pred ccccccccccCccccc
Confidence 3455899999987764
No 139
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.39 E-value=11 Score=32.07 Aligned_cols=19 Identities=32% Similarity=0.961 Sum_probs=15.5
Q ss_pred cccchhhcC----CCCccccccc
Q 026347 213 CCIICSWHL----TNCPLCRRRI 231 (240)
Q Consensus 213 ~C~~C~~~~----~~CpiCR~~i 231 (240)
.|..|-+++ +.||+|++.-
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred hhHhHHHHHhcCCCCCccccccc
Confidence 589998876 7999998654
No 140
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.25 E-value=11 Score=33.30 Aligned_cols=9 Identities=44% Similarity=1.431 Sum_probs=7.8
Q ss_pred CCccccccc
Q 026347 223 NCPLCRRRI 231 (240)
Q Consensus 223 ~CpiCR~~i 231 (240)
.||.||+.+
T Consensus 356 ~cp~cr~~f 364 (381)
T KOG3899|consen 356 QCPTCRKNF 364 (381)
T ss_pred CCcchhhce
Confidence 799999875
No 141
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=36.17 E-value=7.6 Score=40.62 Aligned_cols=42 Identities=29% Similarity=0.669 Sum_probs=32.4
Q ss_pred cccceecccccc-ceEEccCCCcccccchhhcC----CCCcccccccc
Q 026347 190 PDLCVICLEQEY-NAVFVPCGHMCCCIICSWHL----TNCPLCRRRID 232 (240)
Q Consensus 190 ~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~ 232 (240)
...|.+|.+--+ ...+.-|||.. |..|...+ ..||+|...+.
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~-c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEP-CCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhH-hhhHHHHHHHHhccCcchhhhhh
Confidence 348999999877 44556899999 66998877 48999975443
No 142
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=35.19 E-value=57 Score=27.95 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=24.1
Q ss_pred CCCCCCeEeecCCHHHHHHHHhhHHHHHHHHHhhHHH
Q 026347 93 RPHKGPFYVSPKTIDELIENLGKWARWYKYASFGLTI 129 (240)
Q Consensus 93 ~P~~g~~~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~ 129 (240)
++...||+-....+++.+......++.|++++++.++
T Consensus 28 ~~~~~~Y~~a~~~we~r~~~~~~~~~~w~v~a~~~~~ 64 (250)
T PRK13887 28 GETENPYLNARRTWNDHVGGVVSQRQTWQVVGILSLL 64 (250)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334478888888888777777777777664444333
No 143
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.17 E-value=31 Score=26.35 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=7.8
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 026347 119 WYKYASFGLTIFGTFLIA 136 (240)
Q Consensus 119 ~~~~~~i~~~~~gv~ll~ 136 (240)
|..++.++++++.+++++
T Consensus 2 W~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLF 19 (130)
T ss_pred eeeHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 144
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.75 E-value=12 Score=34.95 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=25.2
Q ss_pred cccceeccccccc-eEEccCCCcccccchhhc
Q 026347 190 PDLCVICLEQEYN-AVFVPCGHMCCCIICSWH 220 (240)
Q Consensus 190 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~ 220 (240)
...|-||.+.... ++.++|||.| |..|...
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~-c~~cw~~ 100 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPF-CPPCWTG 100 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHH-HHHHHHH
Confidence 3479999998885 8888999999 9999765
No 145
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=34.70 E-value=1.1e+02 Score=18.78 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=6.8
Q ss_pred HHHHHhhHHHHHHH
Q 026347 120 YKYASFGLTIFGTF 133 (240)
Q Consensus 120 ~~~~~i~~~~~gv~ 133 (240)
+-|.+.+++++.++
T Consensus 7 yVW~sYg~t~l~l~ 20 (45)
T TIGR03141 7 YVWLAYGITALVLA 20 (45)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555554443
No 146
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=34.63 E-value=15 Score=25.84 Aligned_cols=43 Identities=30% Similarity=0.641 Sum_probs=15.7
Q ss_pred cccceeccccccc----eEEc---cCCCcccccchhhc-----CCCCccccccccc
Q 026347 190 PDLCVICLEQEYN----AVFV---PCGHMCCCIICSWH-----LTNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~-----~~~CpiCR~~i~~ 233 (240)
...|.||-+.... -+|+ .|+--+ |..|+.- .+.||.|+.+..+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPv-Cr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPV-CRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCcc-chhHHHHHhhcCcccccccCCCccc
Confidence 4589999875432 1344 444444 8888742 2689999987654
No 147
>PF05439 JTB: Jumping translocation breakpoint protein (JTB); InterPro: IPR008657 This family contains several jumping translocation breakpoint proteins or JTBs. Jumping translocation (JT) is an unbalanced translocation that comprises amplified chromosomal segments jumping to various telomeres. JTB, located at 1q21, has been found to fuse with the telomeric repeats of acceptor telomeres in a case of JT. hJTB (Homo sapiens JTB) encodes a transmembrane protein that is highly conserved among divergent eukaryotic species. JT results in a hJTB truncation, which potentially produces an hJTB product devoid of the transmembrane domain. hJTB is located in a gene-rich region at 1q21, called EDC (Epidermal Differentiation Complex) []. JTB has also been implicated in prostatic carcinomas [].; GO: 0016021 integral to membrane; PDB: 2KJX_A.
Probab=34.40 E-value=13 Score=28.09 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=0.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026347 115 KWARWYKYASFGLTIFGTFLIAKRAIHYILQRKRRWELHR 154 (240)
Q Consensus 115 ~~~r~~~~~~i~~~~~gv~ll~~~~~r~~~~~r~~~~~~~ 154 (240)
....+|++-++.+++.-+..++..++++.+.++...++++
T Consensus 73 e~~~Fw~Fe~~~l~i~l~s~~~v~~R~r~Ldr~~~~rv~r 112 (114)
T PF05439_consen 73 EERNFWKFEGFMLVIGLLSYLVVVLRQRQLDRRAYERVQR 112 (114)
T ss_dssp S---------------------------------------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445677665555444444455555666666555444443
No 148
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=34.02 E-value=18 Score=29.29 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=15.9
Q ss_pred CCCcccccchhhcCCCCcccccccccee
Q 026347 208 CGHMCCCIICSWHLTNCPLCRRRIDQVV 235 (240)
Q Consensus 208 CgH~~~C~~C~~~~~~CpiCR~~i~~~~ 235 (240)
|||.+ .. ..-..||+|..+-..+.
T Consensus 140 CGy~~--~g--e~P~~CPiCga~k~~F~ 163 (166)
T COG1592 140 CGYTH--EG--EAPEVCPICGAPKEKFE 163 (166)
T ss_pred CCCcc--cC--CCCCcCCCCCChHHHhh
Confidence 57774 34 44458999988765543
No 149
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=33.97 E-value=12 Score=21.31 Aligned_cols=19 Identities=32% Similarity=0.740 Sum_probs=10.4
Q ss_pred CcccccchhhcC--------CCCccccc
Q 026347 210 HMCCCIICSWHL--------TNCPLCRR 229 (240)
Q Consensus 210 H~~~C~~C~~~~--------~~CpiCR~ 229 (240)
|.| |..|-..+ ..||.|..
T Consensus 3 ~rf-C~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRF-CGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB--TTT--BEEE-SSSS-EEESSSS-
T ss_pred Ccc-cCcCCccccCCCCcCEeECCCCcC
Confidence 667 78886554 36888864
No 150
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=33.82 E-value=34 Score=24.60 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=17.6
Q ss_pred eecccCCCceeEEeeeEEecCCCCeEE
Q 026347 65 IERLLPTGTSLTVVGEAVKDDIGTVRI 91 (240)
Q Consensus 65 ~E~~L~~g~~lt~vGe~~~d~~g~~~i 91 (240)
...-|++|..+-+.|-+ ..-.|.+.|
T Consensus 59 ~~~~i~~G~vvrV~G~i-~~frg~~ql 84 (92)
T cd04483 59 QAKVLEIGDLLRVRGSI-RTYRGEREI 84 (92)
T ss_pred cccccCCCCEEEEEEEE-eccCCeeEE
Confidence 34469999999999985 433455443
No 151
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=32.92 E-value=5.7 Score=25.62 Aligned_cols=8 Identities=50% Similarity=1.115 Sum_probs=2.5
Q ss_pred cccceecc
Q 026347 190 PDLCVICL 197 (240)
Q Consensus 190 ~~~C~iC~ 197 (240)
+..|++|.
T Consensus 24 PatCP~C~ 31 (54)
T PF09237_consen 24 PATCPICG 31 (54)
T ss_dssp -EE-TTT-
T ss_pred CCCCCcch
Confidence 33555554
No 152
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.90 E-value=62 Score=22.91 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026347 137 KRAIHYILQRKRRWELHRRVL 157 (240)
Q Consensus 137 ~~~~r~~~~~r~~~~~~~~~~ 157 (240)
++.||..+++|+-.++-++++
T Consensus 27 ~ieYrk~~rqrkId~li~RIr 47 (81)
T PF00558_consen 27 YIEYRKIKRQRKIDRLIERIR 47 (81)
T ss_dssp ------------CHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 333444444444333333433
No 153
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=32.65 E-value=52 Score=20.56 Aligned_cols=28 Identities=21% Similarity=0.634 Sum_probs=14.2
Q ss_pred CeEEeCCCCC-CeEeecCCHHHHHHHHhhH
Q 026347 88 TVRIQRPHKG-PFYVSPKTIDELIENLGKW 116 (240)
Q Consensus 88 ~~~iq~P~~g-~~~ls~~s~~~Li~~l~~~ 116 (240)
.+.+++ .+| +|++|.-.-+.-+..+..+
T Consensus 7 ki~~~~-~~Gl~y~vT~~~s~~~L~k~~~w 35 (45)
T PF12123_consen 7 KIIFQS-KDGLPYFVTDPLSDAELDKFTAW 35 (45)
T ss_dssp EEEE-T--TS-EEEEE----HHHHHHHHHH
T ss_pred EEEEec-CCCcEEEEeCCCCHHHHHHHHHH
Confidence 444554 678 8999987666666555544
No 154
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.20 E-value=81 Score=24.12 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=14.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026347 122 YASFGLTIFGTFLIAKRAIHYILQRK 147 (240)
Q Consensus 122 ~~~i~~~~~gv~ll~~~~~r~~~~~r 147 (240)
+..|++++++.+++...++-|+..|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777655555555555554443
No 155
>PHA03237 envelope glycoprotein M; Provisional
Probab=31.25 E-value=4.1e+02 Score=24.85 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026347 129 IFGTFLIAKRAIHYILQRK 147 (240)
Q Consensus 129 ~~gv~ll~~~~~r~~~~~r 147 (240)
++.++++..+..|.+..+|
T Consensus 337 il~l~m~vvRlvRa~~yHr 355 (424)
T PHA03237 337 VIIVIMLVVRLVRACLYHR 355 (424)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665444
No 156
>PHA02700 ORF017 DNA-binding phosphoprotein; Provisional
Probab=31.19 E-value=37 Score=24.94 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=16.8
Q ss_pred cccceEEe-CCCeeEEEecCCCc
Q 026347 6 KEVPWYLD-DGTGRAFVVGARGA 27 (240)
Q Consensus 6 ~~vPf~L~-d~~g~V~V~~~~~a 27 (240)
+..||+++ ||.|++.|..+..-
T Consensus 7 ~~~PFiint~geGr~LVLKavkl 29 (106)
T PHA02700 7 HKRPFIVNVEGQGRVLVLRYVRM 29 (106)
T ss_pred ccCCeEEeecCcceEEEEEEEee
Confidence 44899995 66899999875543
No 157
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.65 E-value=15 Score=28.18 Aligned_cols=20 Identities=35% Similarity=0.924 Sum_probs=15.0
Q ss_pred ccchhhc-CCCCccccccccc
Q 026347 214 CIICSWH-LTNCPLCRRRIDQ 233 (240)
Q Consensus 214 C~~C~~~-~~~CpiCR~~i~~ 233 (240)
|..|-.. +..||+|..+|..
T Consensus 31 cskcgeati~qcp~csasirg 51 (160)
T COG4306 31 CSKCGEATITQCPICSASIRG 51 (160)
T ss_pred HhhhchHHHhcCCccCCcccc
Confidence 7777654 3689999988865
No 158
>PLN02400 cellulose synthase
Probab=29.54 E-value=55 Score=34.10 Aligned_cols=43 Identities=30% Similarity=0.650 Sum_probs=28.8
Q ss_pred cccceeccccccce----EEc---cCCCcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEYNA----VFV---PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~~----~~~---pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
...|.||-+..... .|+ .|+--+ |..|+.=- +.||.|+....+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPV-CRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPV-CRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCcc-ccchhheecccCCccCcccCCcccc
Confidence 44899998863221 344 455445 99998422 589999988764
No 159
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=29.01 E-value=57 Score=21.36 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=20.8
Q ss_pred ecccCCCceeEEeeeEEecCCCCeEEeCC
Q 026347 66 ERLLPTGTSLTVVGEAVKDDIGTVRIQRP 94 (240)
Q Consensus 66 E~~L~~g~~lt~vGe~~~d~~g~~~iq~P 94 (240)
-+.|++|+.+.+.|.+...+++.+.|..+
T Consensus 42 ~~~l~~g~~v~v~G~v~~~~~~~~~l~~~ 70 (75)
T PF01336_consen 42 REKLKEGDIVRVRGKVKRYNGGELELIVP 70 (75)
T ss_dssp HHTS-TTSEEEEEEEEEEETTSSEEEEEE
T ss_pred hhcCCCCeEEEEEEEEEEECCccEEEEEC
Confidence 45678999999999987775554766544
No 160
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.94 E-value=26 Score=34.99 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=12.5
Q ss_pred cCCCcccccchhhcC
Q 026347 207 PCGHMCCCIICSWHL 221 (240)
Q Consensus 207 pCgH~~~C~~C~~~~ 221 (240)
.|||...|..|...+
T Consensus 440 ~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 440 DCGYIAECPNCDSPL 454 (730)
T ss_pred cCCCcccCCCCCcce
Confidence 789999999997655
No 161
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=28.74 E-value=21 Score=21.99 Aligned_cols=21 Identities=33% Similarity=0.798 Sum_probs=13.5
Q ss_pred ccccchhhcC--------CCCcccccccc
Q 026347 212 CCCIICSWHL--------TNCPLCRRRID 232 (240)
Q Consensus 212 ~~C~~C~~~~--------~~CpiCR~~i~ 232 (240)
+.|..|-..+ ..||.|..++.
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCeEE
Confidence 4466664433 47999987765
No 162
>PLN02436 cellulose synthase A
Probab=28.62 E-value=54 Score=34.12 Aligned_cols=43 Identities=28% Similarity=0.600 Sum_probs=29.3
Q ss_pred cccceeccccccc----eEEccCC---CcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEYN----AVFVPCG---HMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~----~~~~pCg---H~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
...|.||-+.... -.|+.|. --. |..|+.-- +.||.|+++..+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpv-Cr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPV-CRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCcc-ccchhhhhhhcCCccCcccCCchhh
Confidence 4489999986422 1455554 334 99998533 589999988764
No 163
>PF15050 SCIMP: SCIMP protein
Probab=28.54 E-value=55 Score=24.98 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=17.3
Q ss_pred HHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 026347 119 WYKYASFGLTIF--GTFLIAKRAIHYILQRKRRWELHR 154 (240)
Q Consensus 119 ~~~~~~i~~~~~--gv~ll~~~~~r~~~~~r~~~~~~~ 154 (240)
+|.++++++.++ ++.+++|-..|+..++-++++..+
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiak 45 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAK 45 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceecc
Confidence 444555554444 444454444555444444554443
No 164
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=28.48 E-value=2.1e+02 Score=22.00 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=7.0
Q ss_pred CeEeecCCHHHHH
Q 026347 98 PFYVSPKTIDELI 110 (240)
Q Consensus 98 ~~~ls~~s~~~Li 110 (240)
+..+-+.+.+.-+
T Consensus 60 ~~~i~pL~e~~Ai 72 (134)
T PF07047_consen 60 PRKIRPLNEEKAI 72 (134)
T ss_pred CCcCCCCCHHHHH
Confidence 3455556666555
No 165
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=28.00 E-value=46 Score=21.80 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=22.2
Q ss_pred CeEeecCCHHHHHHHHhhHH-HHHHHHHhhHHHHHHHHH
Q 026347 98 PFYVSPKTIDELIENLGKWA-RWYKYASFGLTIFGTFLI 135 (240)
Q Consensus 98 ~~~ls~~s~~~Li~~l~~~~-r~~~~~~i~~~~~gv~ll 135 (240)
+|++.+..+..+..++.... +..+..+.+..++|+.++
T Consensus 15 ~~~l~P~~~r~~l~~l~~~p~~~lR~~Gl~~~~~Gl~ll 53 (57)
T PF09838_consen 15 LPFLAPERWRRMLRQLAQLPDRQLRRIGLVSMVIGLVLL 53 (57)
T ss_pred HHHhCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 57777777776666554443 344455555555565554
No 166
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=27.86 E-value=1.9e+02 Score=26.51 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026347 130 FGTFLIAKRAIHYILQRKR 148 (240)
Q Consensus 130 ~gv~ll~~~~~r~~~~~r~ 148 (240)
+.++++..+..|++..+|+
T Consensus 315 i~l~~~vvR~vR~~~~hr~ 333 (374)
T PF01528_consen 315 ICLIMMVVRLVRAFLYHRR 333 (374)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3455556667777765544
No 167
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=27.46 E-value=20 Score=36.00 Aligned_cols=39 Identities=26% Similarity=0.544 Sum_probs=28.4
Q ss_pred ccceeccccccce-EEc---cCCCcccccchhhcC-----------CCCcccccc
Q 026347 191 DLCVICLEQEYNA-VFV---PCGHMCCCIICSWHL-----------TNCPLCRRR 230 (240)
Q Consensus 191 ~~C~iC~~~~~~~-~~~---pCgH~~~C~~C~~~~-----------~~CpiCR~~ 230 (240)
-.|.||++..... -++ .|-|+| -..|+..| |+||-|...
T Consensus 192 yeCmIC~e~I~~t~~~WSC~sCYhVF-Hl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 192 YECMICTERIKRTAPVWSCKSCYHVF-HLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred eEEEEeeeeccccCCceecchhhhhh-hHHHHHHHHHHhhhccCccccCCcccch
Confidence 3899999976542 233 466998 67898876 589999743
No 168
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=27.18 E-value=44 Score=32.84 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=24.3
Q ss_pred cccccceeccccccce-EEccCCCcccccchhhc--------CCCCcccccccc
Q 026347 188 VMPDLCVICLEQEYNA-VFVPCGHMCCCIICSWH--------LTNCPLCRRRID 232 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~--------~~~CpiCR~~i~ 232 (240)
.....|+++..+..-+ .-..|.|.- |.+=..- .+.||+|...+.
T Consensus 304 ~vSL~CPl~~~Rm~~P~r~~~CkHlQ-cFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 304 RVSLNCPLSKMRMSLPARGHTCKHLQ-CFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred eeEecCCcccceeecCCcccccccce-ecchhhhHHhccCCCeeeCccCCcccc
Confidence 3445899998554322 223455554 4433221 158999976653
No 169
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=27.05 E-value=27 Score=25.26 Aligned_cols=34 Identities=29% Similarity=0.731 Sum_probs=22.9
Q ss_pred ccceeccccccceEEccCCCcccccchhhcC--CCCccccc
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRR 229 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CpiCR~ 229 (240)
..|+||-+- +-||.-+-.|..|...- ..|.+|..
T Consensus 28 gkC~ICDS~-----VRP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 28 GKCVICDSY-----VRPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred Ccccccccc-----cccceeeeeehhcCCccccCceEEecC
Confidence 378888543 33555565689997543 57888865
No 170
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.94 E-value=15 Score=29.23 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=18.6
Q ss_pred CcccccchhhcC-CCCccccccccce
Q 026347 210 HMCCCIICSWHL-TNCPLCRRRIDQV 234 (240)
Q Consensus 210 H~~~C~~C~~~~-~~CpiCR~~i~~~ 234 (240)
+-| |..|-... ..||.|..+|.+.
T Consensus 28 ~~f-C~kCG~~tI~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 28 EKF-CSKCGAKTITSCPNCSTPIRGD 52 (158)
T ss_pred HHH-HHHhhHHHHHHCcCCCCCCCCc
Confidence 345 89997654 7899999999763
No 171
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.68 E-value=29 Score=20.41 Aligned_cols=13 Identities=23% Similarity=0.838 Sum_probs=9.3
Q ss_pred CCCccccccccce
Q 026347 222 TNCPLCRRRIDQV 234 (240)
Q Consensus 222 ~~CpiCR~~i~~~ 234 (240)
..||.|...+.++
T Consensus 27 ~~CP~Cg~~~~r~ 39 (41)
T smart00834 27 ATCPECGGDVRRL 39 (41)
T ss_pred CCCCCCCCcceec
Confidence 5799998865443
No 172
>PRK01343 zinc-binding protein; Provisional
Probab=26.45 E-value=34 Score=22.54 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=5.3
Q ss_pred CCcccccccc
Q 026347 223 NCPLCRRRID 232 (240)
Q Consensus 223 ~CpiCR~~i~ 232 (240)
.||+|++++.
T Consensus 11 ~CP~C~k~~~ 20 (57)
T PRK01343 11 PCPECGKPST 20 (57)
T ss_pred cCCCCCCcCc
Confidence 4555555543
No 173
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=26.43 E-value=18 Score=26.24 Aligned_cols=36 Identities=25% Similarity=0.697 Sum_probs=27.3
Q ss_pred cccceeccccccceEEccCCCcccccchhhcCCCCcccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRR 230 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~ 230 (240)
+..|+.|......-.+ |.. |..|+.....|+-|..+
T Consensus 55 p~kC~~C~qktVk~AY----h~i-C~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 55 PKKCNKCQQKTVKHAY----HVI-CDPCAKELKVCAKCGKP 90 (92)
T ss_pred CccccccccchHHHHH----HHH-HHHHHHhhccCcccCCC
Confidence 4479999876544332 555 99999999999999764
No 174
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.23 E-value=1.3e+02 Score=20.30 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026347 127 LTIFGTFLIAKRAIHYILQ 145 (240)
Q Consensus 127 ~~~~gv~ll~~~~~r~~~~ 145 (240)
.+++|+++-++.+.+++..
T Consensus 6 ali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 6 ALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555556665543
No 175
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=26.12 E-value=30 Score=22.09 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=10.1
Q ss_pred CCCccccccccceee
Q 026347 222 TNCPLCRRRIDQVVR 236 (240)
Q Consensus 222 ~~CpiCR~~i~~~~~ 236 (240)
..||+|..+-..+..
T Consensus 35 w~CP~C~a~K~~F~~ 49 (50)
T cd00730 35 WVCPVCGAGKDDFEP 49 (50)
T ss_pred CCCCCCCCcHHHcEe
Confidence 378888877665543
No 176
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=25.95 E-value=3.4e+02 Score=21.59 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=38.4
Q ss_pred cccccceeeeeeeeeecccCCCceeEEeeeEEecCCCCeEEeCCCCCCeEeecCCHHHHHHHHhhH
Q 026347 51 LDYLQGLKMLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELIENLGKW 116 (240)
Q Consensus 51 ~~~~~g~~~~G~~~~E~~L~~g~~lt~vGe~~~d~~g~~~iq~P~~g~~~ls~~s~~~Li~~l~~~ 116 (240)
+.+--|..+.|+..++..=|.|.++.+.----+| +|+ |---.|||+.--+..-.++|++.
T Consensus 10 v~~qlgr~prgvl~I~~rcp~g~P~VV~t~p~l~-dg~-----PfPTly~lt~P~L~kaaSrLEs~ 69 (167)
T COG1507 10 VGRQLGRAPRGVLKIAYRCPYGEPGVVKTAPKLD-DGT-----PFPTLYYLTHPVLTKAASRLEST 69 (167)
T ss_pred HHHHhcccccCceEEEEECCCCCceEEeecCCCC-CCC-----cCCceeeecChHHHHHHHHHHHh
Confidence 3455688999999999999999887654332233 444 34445899764444444445544
No 177
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=25.02 E-value=23 Score=30.10 Aligned_cols=20 Identities=30% Similarity=0.994 Sum_probs=15.2
Q ss_pred cccchhhcC----CCCcccccccc
Q 026347 213 CCIICSWHL----TNCPLCRRRID 232 (240)
Q Consensus 213 ~C~~C~~~~----~~CpiCR~~i~ 232 (240)
.|..|-+++ +.||+|+..-.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccc
Confidence 488888776 68999986543
No 178
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.91 E-value=1.4e+02 Score=23.68 Aligned_cols=9 Identities=11% Similarity=0.312 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 026347 116 WARWYKYAS 124 (240)
Q Consensus 116 ~~r~~~~~~ 124 (240)
+-.|+++..
T Consensus 14 ~~~~~~~~~ 22 (149)
T PF11694_consen 14 QNDYLRYIL 22 (149)
T ss_pred HHHHHHHHH
Confidence 333444433
No 179
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=24.68 E-value=1.8e+02 Score=17.90 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=5.4
Q ss_pred HHHHHhhHHHHH
Q 026347 120 YKYASFGLTIFG 131 (240)
Q Consensus 120 ~~~~~i~~~~~g 131 (240)
+-|.+.+++++.
T Consensus 6 yVW~sYg~t~~~ 17 (46)
T PF04995_consen 6 YVWSSYGVTALV 17 (46)
T ss_pred HHHHHHHHHHHH
Confidence 334554444443
No 180
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.66 E-value=78 Score=28.70 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=42.9
Q ss_pred eeeeeeeecccCCCceeEEeeeEEecCCCCeEEeCCCCCCeEeecCCHHHHHHHHhhHHHHHH
Q 026347 59 MLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELIENLGKWARWYK 121 (240)
Q Consensus 59 ~~G~~~~E~~L~~g~~lt~vGe~~~d~~g~~~iq~P~~g~~~ls~~s~~~Li~~l~~~~r~~~ 121 (240)
+.|-++.+... .++-++-+|-+..- .+-..+--...++|+||....|..+++.....+..+
T Consensus 209 ~~g~~~v~~s~-~d~LIsr~g~~s~~-~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l~ 269 (355)
T KOG1571|consen 209 MQGPLYVTKSA-ADRLISREGDLSFF-VKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRRELV 269 (355)
T ss_pred ccCcceeeccc-hhhHHHhhccceee-eeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHHH
Confidence 66788888888 88888888876443 333333344556899999999999987666665543
No 181
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.04 E-value=73 Score=33.10 Aligned_cols=44 Identities=27% Similarity=0.584 Sum_probs=29.0
Q ss_pred ccccceeccccccce----EEcc---CCCcccccchhhcC-----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNA----VFVP---CGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~----~~~p---CgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
....|.||-+..... .|+- |+--. |..|+.=- +.||.|+++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpv-Cr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPV-CKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCcc-ccchhhhhhhcCCccCCccCCchhh
Confidence 345899998863221 3444 44445 99998422 589999988764
No 182
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=23.91 E-value=46 Score=26.26 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=16.7
Q ss_pred EEccCCCcccccchhhcCCCCcccccc
Q 026347 204 VFVPCGHMCCCIICSWHLTNCPLCRRR 230 (240)
Q Consensus 204 ~~~pCgH~~~C~~C~~~~~~CpiCR~~ 230 (240)
+-..|||.. ...=...++.||.|...
T Consensus 114 ~C~~Cg~~~-~~~~~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 114 VCENCGHEV-ELTHPERLPPCPKCGHT 139 (146)
T ss_pred ecccCCCEE-EecCCCcCCCCCCCCCC
Confidence 334777776 33334566899999654
No 183
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=23.75 E-value=6.6e+02 Score=24.12 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=18.8
Q ss_pred eeEEeeeEEecCCCCeEEeCCCCC-CeEeec----CCHHHHHHHHhhH
Q 026347 74 SLTVVGEAVKDDIGTVRIQRPHKG-PFYVSP----KTIDELIENLGKW 116 (240)
Q Consensus 74 ~lt~vGe~~~d~~g~~~iq~P~~g-~~~ls~----~s~~~Li~~l~~~ 116 (240)
.+.+.|.|..- +...++....+ .-++.+ .++.++++.+-+|
T Consensus 417 ~f~I~G~L~~~--~~f~~r~~~~~~S~~vn~~~~~~~~~~w~sgl~~~ 462 (507)
T PF07245_consen 417 EFHIKGTLIYL--GPFDDRNYTGGSSIVVNPSEGSWDFFNWLSGLISW 462 (507)
T ss_pred EEEEEEEEEec--cccccccccCceeeEECCccCccChHHHHhHHHHH
Confidence 56666776432 22333333333 233333 3455555555444
No 184
>PHA02862 5L protein; Provisional
Probab=23.59 E-value=42 Score=26.51 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=26.3
Q ss_pred cccceeccccccceEE-ccCC--CcccccchhhcC------CCCcccccccc
Q 026347 190 PDLCVICLEQEYNAVF-VPCG--HMCCCIICSWHL------TNCPLCRRRID 232 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~-~pCg--H~~~C~~C~~~~------~~CpiCR~~i~ 232 (240)
.+.|-||++...+..- =.|. -.+.-.+|..+| ..|++|+.+..
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 3579999988654420 0000 012356788777 47999998774
No 185
>PHA03242 envelope glycoprotein M; Provisional
Probab=23.46 E-value=4.7e+02 Score=24.54 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026347 129 IFGTFLIAKRAIHYILQRK 147 (240)
Q Consensus 129 ~~gv~ll~~~~~r~~~~~r 147 (240)
++.++++..+..|.+..+|
T Consensus 334 il~l~~~vvRlvRa~~yHr 352 (428)
T PHA03242 334 LFALAMAVLRLVRAYLYHR 352 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555666666665443
No 186
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=23.38 E-value=34 Score=18.02 Aligned_cols=17 Identities=29% Similarity=0.786 Sum_probs=8.9
Q ss_pred ccchhhcC----CCCcccccc
Q 026347 214 CIICSWHL----TNCPLCRRR 230 (240)
Q Consensus 214 C~~C~~~~----~~CpiCR~~ 230 (240)
|..|-..+ ..||.|..+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 44454443 357777554
No 187
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.23 E-value=41 Score=32.05 Aligned_cols=14 Identities=36% Similarity=1.049 Sum_probs=8.7
Q ss_pred cCCCcccccchhhc
Q 026347 207 PCGHMCCCIICSWH 220 (240)
Q Consensus 207 pCgH~~~C~~C~~~ 220 (240)
.|||...|..|...
T Consensus 218 ~Cg~~~~C~~C~~~ 231 (505)
T TIGR00595 218 SCGYILCCPNCDVS 231 (505)
T ss_pred hCcCccCCCCCCCc
Confidence 56666666666533
No 188
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=23.14 E-value=1.6e+02 Score=20.84 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCCeEEeCCCCCCeEeecCCHHHHHHHHhh
Q 026347 86 IGTVRIQRPHKGPFYVSPKTIDELIENLGK 115 (240)
Q Consensus 86 ~g~~~iq~P~~g~~~ls~~s~~~Li~~l~~ 115 (240)
...+.|+-.. +.|++|+.+.+++++.+.+
T Consensus 70 ~~~i~I~t~~-~~y~isp~~~~~fi~~l~~ 98 (100)
T PF10882_consen 70 KNVILIKTKD-KTYVISPEDPEEFIEALKK 98 (100)
T ss_pred CCEEEEEECC-ceEEEcCCCHHHHHHHHHh
Confidence 4567777655 7899999999999987764
No 189
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=22.96 E-value=1.3e+02 Score=24.23 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 026347 131 GTFLIAKRAIHYILQR 146 (240)
Q Consensus 131 gv~ll~~~~~r~~~~~ 146 (240)
.+++++|..+|.++-+
T Consensus 105 s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 105 SALAILYFVIRTFRLR 120 (163)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3344444555555433
No 190
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=22.90 E-value=1.4e+02 Score=22.67 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026347 125 FGLTIFGTFLIAKRAIHYI 143 (240)
Q Consensus 125 i~~~~~gv~ll~~~~~r~~ 143 (240)
+.++.+|...|+.+..|.+
T Consensus 96 L~LaamGA~~LLrR~cRr~ 114 (126)
T PF03229_consen 96 LTLAAMGAGALLRRCCRRA 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544444
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=22.72 E-value=4.6e+02 Score=26.61 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=23.1
Q ss_pred cccceeccccccceEEc--c--CCCcccccchhh--------cCCCCccccccccce
Q 026347 190 PDLCVICLEQEYNAVFV--P--CGHMCCCIICSW--------HLTNCPLCRRRIDQV 234 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~--p--CgH~~~C~~C~~--------~~~~CpiCR~~i~~~ 234 (240)
...|.-|...+..++.. | =.-...|..|-. ....||+|...+...
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs~~~~~ 1187 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHSMESFR 1187 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccccccCccccChhhcc
Confidence 34788887765544321 0 001123444432 225799998876543
No 192
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=22.54 E-value=38 Score=22.73 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=9.0
Q ss_pred CCCcccccccc
Q 026347 222 TNCPLCRRRID 232 (240)
Q Consensus 222 ~~CpiCR~~i~ 232 (240)
..||+|++++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 47999999874
No 193
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.53 E-value=2.3e+02 Score=23.19 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=8.8
Q ss_pred CCCeEEeCCCCC--CeEee
Q 026347 86 IGTVRIQRPHKG--PFYVS 102 (240)
Q Consensus 86 ~g~~~iq~P~~g--~~~ls 102 (240)
-|.+-+|.|... |++++
T Consensus 105 lG~~ll~~~~~s~~~~~l~ 123 (184)
T COG3216 105 LGAWLLQRPAQSVGPVHLT 123 (184)
T ss_pred hhhHHhcCCCCCCCchHHH
Confidence 455556665542 55543
No 194
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.39 E-value=89 Score=32.63 Aligned_cols=43 Identities=26% Similarity=0.637 Sum_probs=28.4
Q ss_pred cccceeccccccc----eEEcc---CCCcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEYN----AVFVP---CGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
...|.||-+.... -.|+- |+--. |..|+.=- +.||.|++...+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPV-CrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPV-CRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCcc-ccchhhhhhhcCCccCCccCCchhh
Confidence 4489999886322 13444 44445 99998422 689999987763
No 195
>COG3701 TrbF Type IV secretory pathway, TrbF components [Intracellular trafficking and secretion]
Probab=22.09 E-value=49 Score=27.66 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=34.9
Q ss_pred CCeEeecCCHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 026347 97 GPFYVSPKTIDELIENLGKWARWYKYASFGLTIFGTFLIAKRAI 140 (240)
Q Consensus 97 g~~~ls~~s~~~Li~~l~~~~r~~~~~~i~~~~~gv~ll~~~~~ 140 (240)
.||.-....+|+-+......++.|++.+++.+++++++.....|
T Consensus 18 tPYq~A~q~WderiGs~r~qA~nwr~~~lg~l~la~~~~gg~vw 61 (228)
T COG3701 18 TPYQKARQSWDERIGSARVQAQNWRFVGLGGLTLALALAGGLVW 61 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccee
Confidence 47888888899999999999999998888877777666554444
No 196
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=21.97 E-value=2.4e+02 Score=18.75 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=15.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 026347 120 YKYASFGLTIFGTFLIAKRAIHYIL 144 (240)
Q Consensus 120 ~~~~~i~~~~~gv~ll~~~~~r~~~ 144 (240)
....++++.++|++++.+-.+++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~ry~~ 69 (73)
T PF02656_consen 45 SKVLGLLLIVLGLLTLIYGIYRYRR 69 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677766666666653
No 197
>PF15345 TMEM51: Transmembrane protein 51
Probab=21.91 E-value=56 Score=27.82 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 026347 130 FGTFLIAKRA 139 (240)
Q Consensus 130 ~gv~ll~~~~ 139 (240)
.|++||+..+
T Consensus 67 ~Gv~LLLLSI 76 (233)
T PF15345_consen 67 SGVALLLLSI 76 (233)
T ss_pred HHHHHHHHHH
Confidence 3555554333
No 198
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=21.72 E-value=2.5e+02 Score=28.24 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=10.1
Q ss_pred CeEeecCCHHHHH
Q 026347 98 PFYVSPKTIDELI 110 (240)
Q Consensus 98 ~~~ls~~s~~~Li 110 (240)
.||+...++-..+
T Consensus 704 ~y~vG~lP~~~~l 716 (756)
T PRK11114 704 VYYVGHLPWYERL 716 (756)
T ss_pred EEEeccCCHHHHH
Confidence 6899888887554
No 199
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=21.10 E-value=5.1e+02 Score=21.84 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=14.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026347 119 WYKYASFGLTIFGTFLIAKRAIHYILQRK 147 (240)
Q Consensus 119 ~~~~~~i~~~~~gv~ll~~~~~r~~~~~r 147 (240)
...|.-+++.+++.++++.+++.+.+.++
T Consensus 16 ~vm~~Ll~~Si~s~aIiieR~~~l~~~~~ 44 (227)
T PRK10801 16 LIMLILIGFSIASWAIIIQRTRILNAAAR 44 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555666666656555443333
No 200
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=21.10 E-value=30 Score=22.76 Aligned_cols=11 Identities=27% Similarity=1.153 Sum_probs=5.7
Q ss_pred CCccccccccc
Q 026347 223 NCPLCRRRIDQ 233 (240)
Q Consensus 223 ~CpiCR~~i~~ 233 (240)
.||+|++++.-
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 69999988765
No 201
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=21.04 E-value=4.9e+02 Score=21.63 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=5.2
Q ss_pred hHHHHHHHHH
Q 026347 126 GLTIFGTFLI 135 (240)
Q Consensus 126 ~~~~~gv~ll 135 (240)
++.++|+++|
T Consensus 141 ~~~LvGVLvL 150 (196)
T PF08229_consen 141 ALVLVGVLVL 150 (196)
T ss_pred HHHHHHHHHH
Confidence 3444566555
No 202
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=20.96 E-value=1.1e+02 Score=24.29 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=25.5
Q ss_pred CCCCCCeEeec---CCHHHHHHHHhhH---HHHHHHHHhhHHHHH
Q 026347 93 RPHKGPFYVSP---KTIDELIENLGKW---ARWYKYASFGLTIFG 131 (240)
Q Consensus 93 ~P~~g~~~ls~---~s~~~Li~~l~~~---~r~~~~~~i~~~~~g 131 (240)
.|+|-.|.+.. --+|+|+++-+.. ++.++++++++++++
T Consensus 100 nPndL~fWleDiYTPGyDsLLKkKEae~kr~K~Cki~~Li~~~vc 144 (159)
T PF06789_consen 100 NPNDLEFWLEDIYTPGYDSLLKKKEAELKRSKVCKIFALIVLAVC 144 (159)
T ss_pred CCccchHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777787764 3479999876655 456666665555553
No 203
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=20.68 E-value=52 Score=24.09 Aligned_cols=12 Identities=25% Similarity=0.877 Sum_probs=9.1
Q ss_pred CCccccccccce
Q 026347 223 NCPLCRRRIDQV 234 (240)
Q Consensus 223 ~CpiCR~~i~~~ 234 (240)
.||.|+.+++..
T Consensus 82 ~Cp~C~spFNp~ 93 (105)
T COG4357 82 SCPYCQSPFNPG 93 (105)
T ss_pred CCCCcCCCCCcc
Confidence 588888887764
No 204
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=20.32 E-value=1.3e+02 Score=25.56 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=16.4
Q ss_pred cccccceEEeCCCeeEEEecCCCccc
Q 026347 4 MSKEVPWYLDDGTGRAFVVGARGATG 29 (240)
Q Consensus 4 ~~~~vPf~L~d~~g~V~V~~~~~a~~ 29 (240)
|.++|-|.|+|+.-.|.|.+-...-+
T Consensus 131 NDQsitFvledgsY~I~VeDl~k~qE 156 (268)
T PF15095_consen 131 NDQSITFVLEDGSYEIYVEDLGKDQE 156 (268)
T ss_dssp TTEEEEEEE-SS-EEEEEEE--S---
T ss_pred cCceEEEEEeCCcEEEEehhcccccc
Confidence 45789999999988899988765554
No 205
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=20.24 E-value=48 Score=29.76 Aligned_cols=21 Identities=38% Similarity=1.056 Sum_probs=15.0
Q ss_pred cCCCcccccchhh----cCCCCcccc
Q 026347 207 PCGHMCCCIICSW----HLTNCPLCR 228 (240)
Q Consensus 207 pCgH~~~C~~C~~----~~~~CpiCR 228 (240)
.|.|.| |.+|.. .+..||-|.
T Consensus 350 ~Ck~~F-CldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 350 SCKNVF-CLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred hcccee-eccchHHHHhhhhcCCCcC
Confidence 577777 888864 335899885
No 206
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=20.18 E-value=89 Score=24.05 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=9.2
Q ss_pred cccCCCceeEEeeeE
Q 026347 67 RLLPTGTSLTVVGEA 81 (240)
Q Consensus 67 ~~L~~g~~lt~vGe~ 81 (240)
=++|.|.-+.+.|-+
T Consensus 51 ci~pfG~vili~Gvv 65 (129)
T PF15099_consen 51 CIMPFGVVILIAGVV 65 (129)
T ss_pred EEEEehHHHHHHhhH
Confidence 456666666666654
No 207
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=20.05 E-value=2.7e+02 Score=19.96 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026347 130 FGTFLIAKRAIHYILQRKRRWELHRRVLA 158 (240)
Q Consensus 130 ~gv~ll~~~~~r~~~~~r~~~~~~~~~~~ 158 (240)
+|+....+..+||......|+++-.++.+
T Consensus 55 vGlgyt~wF~~ryLL~~~~R~el~~~i~~ 83 (90)
T PF14159_consen 55 VGLGYTGWFVYRYLLFAENRQELLQKIQS 83 (90)
T ss_pred HHHHHHhHHHHHHHcChHhHHHHHHHHHH
Confidence 56667778888888776666666666554
Done!