Query 026347
Match_columns 240
No_of_seqs 247 out of 1418
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.6 5.9E-16 2E-20 106.1 4.6 55 186-240 11-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.5 3.3E-15 1.1E-19 100.8 0.8 53 188-240 5-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.4 1.2E-14 4.1E-19 98.4 0.2 52 189-240 7-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.4 5.6E-14 1.9E-18 99.0 2.7 50 191-240 19-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 96.0 2.7 51 190-240 24-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.4 4.6E-14 1.6E-18 98.3 -0.8 51 190-240 25-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.1 2.2E-11 7.7E-16 108.0 3.2 51 190-240 295-345 (345)
8 2d8t_A Dactylidin, ring finger 99.1 8.1E-11 2.8E-15 80.7 3.5 45 188-233 13-61 (71)
9 2ysl_A Tripartite motif-contai 99.0 1.4E-10 4.6E-15 79.7 4.1 45 188-233 18-69 (73)
10 2csy_A Zinc finger protein 183 99.0 1.6E-10 5.6E-15 81.1 3.7 45 188-233 13-61 (81)
11 2ecn_A Ring finger protein 141 99.0 1.3E-10 4.4E-15 79.3 2.4 48 189-238 14-65 (70)
12 1chc_A Equine herpes virus-1 r 99.0 1.7E-10 5.9E-15 78.1 2.8 49 190-239 5-58 (68)
13 2ea6_A Ring finger protein 4; 98.9 2.6E-10 8.9E-15 77.2 2.3 45 188-233 13-68 (69)
14 2kiz_A E3 ubiquitin-protein li 98.9 4E-10 1.4E-14 76.5 3.0 48 188-236 12-66 (69)
15 2yur_A Retinoblastoma-binding 98.9 5.9E-10 2E-14 77.0 3.5 45 188-233 13-64 (74)
16 2djb_A Polycomb group ring fin 98.9 5.1E-10 1.8E-14 76.8 3.1 47 188-235 13-64 (72)
17 1bor_A Transcription factor PM 98.9 3.1E-10 1.1E-14 74.2 1.8 44 189-233 5-49 (56)
18 4ayc_A E3 ubiquitin-protein li 98.9 2.6E-10 9E-15 88.3 1.5 43 191-234 54-100 (138)
19 2ecy_A TNF receptor-associated 98.9 6E-10 2.1E-14 75.1 2.3 45 188-233 13-62 (66)
20 3ng2_A RNF4, snurf, ring finge 98.9 3.6E-10 1.2E-14 77.1 1.1 43 190-233 10-63 (71)
21 2ecm_A Ring finger and CHY zin 98.9 6.7E-10 2.3E-14 71.9 2.3 42 190-232 5-54 (55)
22 2xeu_A Ring finger protein 4; 98.9 4.6E-10 1.6E-14 74.8 1.4 47 191-238 4-63 (64)
23 2ct2_A Tripartite motif protei 98.9 1.1E-09 3.8E-14 77.7 3.2 45 188-233 13-68 (88)
24 2ect_A Ring finger protein 126 98.8 1.9E-09 6.4E-14 75.0 3.6 46 188-234 13-65 (78)
25 2l0b_A E3 ubiquitin-protein li 98.8 1.3E-09 4.4E-14 78.4 2.0 44 189-233 39-89 (91)
26 2egp_A Tripartite motif-contai 98.8 1.7E-09 5.8E-14 75.2 2.5 44 189-233 11-65 (79)
27 1iym_A EL5; ring-H2 finger, ub 98.8 1.9E-09 6.4E-14 69.8 2.6 42 190-232 5-54 (55)
28 1x4j_A Ring finger protein 38; 98.8 1.4E-09 4.8E-14 75.2 2.0 44 189-233 22-72 (75)
29 2ep4_A Ring finger protein 24; 98.8 1.3E-09 4.5E-14 75.0 1.7 49 188-237 13-68 (74)
30 3ztg_A E3 ubiquitin-protein li 98.8 2.6E-09 8.8E-14 76.7 2.7 44 188-232 11-61 (92)
31 2ecw_A Tripartite motif-contai 98.8 4.9E-09 1.7E-13 73.6 4.1 45 188-233 17-71 (85)
32 2ecv_A Tripartite motif-contai 98.8 4.6E-09 1.6E-13 73.7 3.9 45 188-233 17-71 (85)
33 2ysj_A Tripartite motif-contai 98.8 5.3E-09 1.8E-13 69.7 3.8 39 188-227 18-63 (63)
34 1e4u_A Transcriptional repress 98.7 2.1E-09 7.1E-14 75.2 1.6 50 189-239 10-68 (78)
35 3l11_A E3 ubiquitin-protein li 98.7 3E-09 1E-13 79.5 2.3 45 188-233 13-62 (115)
36 3fl2_A E3 ubiquitin-protein li 98.7 2.4E-09 8.4E-14 81.2 1.2 43 190-233 52-99 (124)
37 2y1n_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 93.8 2.6 47 191-238 333-384 (389)
38 3lrq_A E3 ubiquitin-protein li 98.7 3.1E-09 1.1E-13 77.7 1.0 43 190-233 22-70 (100)
39 1g25_A CDK-activating kinase a 98.7 3.5E-09 1.2E-13 71.0 1.1 42 191-233 4-55 (65)
40 2ecj_A Tripartite motif-contai 98.7 6.8E-09 2.3E-13 67.7 2.4 39 188-227 13-58 (58)
41 1t1h_A Gspef-atpub14, armadill 98.7 4.9E-09 1.7E-13 72.8 1.8 44 189-233 7-55 (78)
42 1z6u_A NP95-like ring finger p 98.6 6.5E-09 2.2E-13 81.7 1.2 44 190-234 78-126 (150)
43 2y43_A E3 ubiquitin-protein li 98.6 6.8E-09 2.3E-13 75.5 1.2 44 189-233 21-69 (99)
44 2ckl_A Polycomb group ring fin 98.6 9.8E-09 3.3E-13 75.9 1.8 44 189-233 14-62 (108)
45 1jm7_A BRCA1, breast cancer ty 98.6 9.2E-09 3.1E-13 76.3 1.0 42 191-233 22-70 (112)
46 3hct_A TNF receptor-associated 98.6 2.8E-08 9.6E-13 74.7 3.0 45 188-233 16-65 (118)
47 2ckl_B Ubiquitin ligase protei 98.5 1.3E-08 4.5E-13 80.8 1.2 45 188-233 52-102 (165)
48 1jm7_B BARD1, BRCA1-associated 98.5 1.8E-08 6.1E-13 75.6 1.7 42 190-232 22-66 (117)
49 1v87_A Deltex protein 2; ring- 98.5 1.9E-08 6.6E-13 74.9 0.7 42 191-233 26-94 (114)
50 2kr4_A Ubiquitin conjugation f 98.5 5.5E-08 1.9E-12 68.9 3.1 45 188-233 12-60 (85)
51 1wgm_A Ubiquitin conjugation f 98.5 7.6E-08 2.6E-12 70.1 3.8 45 188-233 20-69 (98)
52 1rmd_A RAG1; V(D)J recombinati 98.5 2.4E-08 8.1E-13 74.7 1.1 44 189-233 22-70 (116)
53 2ecl_A Ring-box protein 2; RNF 98.5 3.7E-08 1.3E-12 69.1 1.6 43 190-233 15-76 (81)
54 2kre_A Ubiquitin conjugation f 98.4 7.7E-08 2.6E-12 70.4 2.9 45 188-233 27-75 (100)
55 4ap4_A E3 ubiquitin ligase RNF 98.4 4.4E-08 1.5E-12 74.3 0.7 43 190-233 7-60 (133)
56 3knv_A TNF receptor-associated 98.4 4.5E-08 1.5E-12 76.1 0.1 43 188-231 29-76 (141)
57 4ap4_A E3 ubiquitin ligase RNF 98.3 9.6E-08 3.3E-12 72.4 1.4 49 189-238 71-132 (133)
58 2c2l_A CHIP, carboxy terminus 98.3 2.2E-07 7.7E-12 79.1 3.3 44 189-233 207-255 (281)
59 3dpl_R Ring-box protein 1; ubi 98.2 3E-07 1E-11 67.9 1.7 42 190-232 37-100 (106)
60 3hcs_A TNF receptor-associated 98.2 4.1E-07 1.4E-11 72.5 2.3 45 188-233 16-65 (170)
61 2f42_A STIP1 homology and U-bo 98.1 2.8E-06 9.5E-11 68.4 5.4 45 188-233 104-153 (179)
62 4a0k_B E3 ubiquitin-protein li 98.1 5.6E-07 1.9E-11 67.6 0.3 41 191-232 49-111 (117)
63 2yu4_A E3 SUMO-protein ligase 98.0 2.3E-06 7.7E-11 61.6 2.1 41 189-230 6-59 (94)
64 2d8s_A Cellular modulator of i 97.9 4.4E-06 1.5E-10 58.4 2.9 43 190-233 15-70 (80)
65 3htk_C E3 SUMO-protein ligase 97.9 1.3E-05 4.4E-10 67.9 5.4 46 187-233 178-232 (267)
66 3vk6_A E3 ubiquitin-protein li 97.7 1.6E-05 5.5E-10 57.3 2.4 45 192-237 3-53 (101)
67 1wim_A KIAA0161 protein; ring 97.6 9.1E-06 3.1E-10 58.2 -0.0 40 190-230 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 97.3 6.8E-05 2.3E-09 49.5 1.7 48 190-238 3-57 (61)
69 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00016 5.6E-09 47.5 0.9 44 189-232 5-58 (60)
70 2ct0_A Non-SMC element 1 homol 96.4 0.0026 8.9E-08 43.5 3.3 45 189-234 14-65 (74)
71 3k1l_B Fancl; UBC, ring, RWD, 96.2 0.001 3.5E-08 58.4 0.9 45 189-234 307-374 (381)
72 2zet_C Melanophilin; complex, 88.2 0.58 2E-05 36.2 4.6 41 189-230 67-117 (153)
73 2ko5_A Ring finger protein Z; 88.1 0.48 1.7E-05 33.4 3.6 48 188-237 26-77 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 87.5 0.13 4.5E-06 36.5 0.5 29 191-220 4-35 (101)
75 2cs3_A Protein C14ORF4, MY039 83.9 0.3 1E-05 33.5 0.8 31 189-220 14-48 (93)
76 1zbd_B Rabphilin-3A; G protein 83.9 1.4 4.7E-05 33.2 4.6 40 190-230 55-107 (134)
77 3nw0_A Non-structural maintena 78.3 0.82 2.8E-05 37.9 1.7 44 190-234 180-230 (238)
78 3i2d_A E3 SUMO-protein ligase 63.1 3.4 0.00011 36.5 2.2 43 189-232 248-299 (371)
79 2a20_A Regulating synaptic mem 58.3 1.3 4.5E-05 28.4 -0.9 21 188-212 7-28 (62)
80 4fo9_A E3 SUMO-protein ligase 57.1 5 0.00017 35.2 2.2 43 189-232 214-265 (360)
81 1mm2_A MI2-beta; PHD, zinc fin 51.9 8.8 0.0003 24.4 2.3 11 189-199 8-18 (61)
82 2yql_A PHD finger protein 21A; 50.9 5.1 0.00017 25.0 1.0 11 189-199 8-18 (56)
83 2jne_A Hypothetical protein YF 47.3 5.6 0.00019 28.1 0.8 41 189-234 31-74 (101)
84 1z60_A TFIIH basal transcripti 46.8 9.9 0.00034 24.3 1.8 35 192-227 17-58 (59)
85 1fp0_A KAP-1 corepressor; PHD 46.1 12 0.00041 25.9 2.3 13 188-200 23-35 (88)
86 2fiy_A Protein FDHE homolog; F 45.5 6 0.00021 34.0 0.9 42 189-230 181-231 (309)
87 2knc_B Integrin beta-3; transm 42.9 73 0.0025 21.3 7.8 21 135-155 30-50 (79)
88 1weo_A Cellulose synthase, cat 40.0 11 0.00038 26.2 1.4 43 190-233 16-70 (93)
89 2knc_B Integrin beta-3; transm 39.5 84 0.0029 21.0 7.4 36 123-158 15-50 (79)
90 3mjh_B Early endosome antigen 37.0 3.4 0.00012 23.4 -1.4 9 224-232 8-16 (34)
91 3kdf_D Replication protein A 3 36.8 46 0.0016 24.3 4.5 25 66-91 77-101 (132)
92 2l5u_A Chromodomain-helicase-D 36.3 19 0.00063 22.8 1.9 11 189-199 10-20 (61)
93 2d8v_A Zinc finger FYVE domain 36.1 15 0.0005 24.1 1.4 32 188-221 6-38 (67)
94 2hw2_A Rifampin ADP-ribosyl tr 30.4 29 0.00098 26.0 2.3 48 14-84 67-114 (143)
95 2lri_C Autoimmune regulator; Z 30.2 41 0.0014 21.6 2.9 39 191-230 13-59 (66)
96 1lko_A Rubrerythrin all-iron(I 29.8 27 0.00093 27.5 2.3 27 206-236 159-186 (191)
97 2kll_A Interleukin-33; beta-tr 29.1 71 0.0024 23.7 4.3 26 4-29 21-46 (161)
98 3pwf_A Rubrerythrin; non heme 29.0 24 0.00083 27.3 1.9 27 206-237 142-169 (170)
99 3m62_A Ubiquitin conjugation f 28.2 51 0.0017 32.7 4.3 45 189-233 890-938 (968)
100 6rxn_A Rubredoxin; electron tr 28.0 27 0.00091 21.0 1.5 15 222-236 31-45 (46)
101 2egq_A FHL1 protein; LIM domai 27.6 29 0.001 22.3 1.8 19 214-232 6-26 (77)
102 3ql9_A Transcriptional regulat 27.2 24 0.00083 26.2 1.5 40 190-230 57-111 (129)
103 2ehe_A Four and A half LIM dom 27.2 22 0.00077 23.3 1.2 10 223-232 17-26 (82)
104 3zyq_A Hepatocyte growth facto 27.1 35 0.0012 27.6 2.6 46 186-232 160-221 (226)
105 1xwh_A Autoimmune regulator; P 27.0 16 0.00055 23.5 0.4 10 190-199 8-17 (66)
106 3f1z_A Putative nucleic acid-b 26.5 26 0.0009 24.5 1.5 30 66-95 100-130 (133)
107 4rxn_A Rubredoxin; electron tr 25.9 30 0.001 21.6 1.5 16 222-237 37-52 (54)
108 2cuq_A Four and A half LIM dom 25.7 26 0.00089 22.8 1.3 10 223-232 43-52 (80)
109 1vfy_A Phosphatidylinositol-3- 24.9 24 0.00082 23.1 1.0 28 191-219 12-43 (73)
110 4ayb_P DNA-directed RNA polyme 24.3 31 0.0011 20.9 1.3 11 223-233 25-35 (48)
111 2l7x_A Envelope glycoprotein; 23.4 11 0.00038 24.9 -0.9 31 190-221 5-40 (77)
112 1ukf_A Avirulence protein AVRP 23.2 92 0.0032 24.5 4.2 38 77-116 133-170 (188)
113 2csz_A Synaptotagmin-like prot 22.8 53 0.0018 22.0 2.4 43 187-230 22-73 (76)
114 3c5k_A HD6, histone deacetylas 22.8 43 0.0015 23.9 2.0 25 190-215 24-48 (109)
115 2gmg_A Hypothetical protein PF 22.7 32 0.0011 24.6 1.3 19 207-230 72-93 (105)
116 2ziu_A MUS81 protein; helix-ha 22.5 68 0.0023 26.9 3.7 81 31-116 19-105 (311)
117 2v3b_B Rubredoxin 2, rubredoxi 22.2 39 0.0013 21.0 1.5 16 222-237 37-52 (55)
118 1e8j_A Rubredoxin; iron-sulfur 22.1 36 0.0012 20.9 1.3 14 223-236 38-51 (52)
119 1wev_A Riken cDNA 1110020M19; 21.9 28 0.00094 23.8 0.8 44 189-233 15-75 (88)
120 1yk4_A Rubredoxin, RD; electro 21.9 39 0.0013 20.8 1.4 15 222-236 36-50 (52)
121 4f02_C Eukaryotic translation 21.7 34 0.0012 17.7 0.9 10 88-97 2-11 (27)
122 2lbm_A Transcriptional regulat 21.5 50 0.0017 24.8 2.3 39 190-229 63-116 (142)
123 2jtn_A LIM domain-binding prot 20.7 30 0.001 26.6 1.0 20 214-233 110-131 (182)
124 2kn9_A Rubredoxin; metalloprot 20.5 41 0.0014 22.8 1.5 16 222-237 61-76 (81)
125 1weu_A Inhibitor of growth fam 20.4 1.1E+02 0.0038 21.0 3.7 10 222-231 77-86 (91)
126 1dx8_A Rubredoxin; electron tr 20.3 43 0.0015 22.0 1.5 16 222-237 41-56 (70)
127 2rgt_A Fusion of LIM/homeobox 20.1 36 0.0012 25.8 1.3 41 192-233 35-77 (169)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.9e-16 Score=106.11 Aligned_cols=55 Identities=27% Similarity=0.645 Sum_probs=49.8
Q ss_pred CCcccccceeccccccceEEccCCCcccccchhhcCCCCccccccccceeecccC
Q 026347 186 DRVMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 186 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~i~~~~~~~~~ 240 (240)
..++...|+||++++++++++||||+++|..|+..++.||+||++|..++++|.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 3344568999999999999999999977999999999999999999999999974
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.49 E-value=3.3e-15 Score=100.83 Aligned_cols=53 Identities=25% Similarity=0.751 Sum_probs=47.2
Q ss_pred cccccceeccccccceEEc--cCCCcccccchhhcCC----CCccccccccceeecccC
Q 026347 188 VMPDLCVICLEQEYNAVFV--PCGHMCCCIICSWHLT----NCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~----~CpiCR~~i~~~~~~~~~ 240 (240)
+....|+||++++++++++ ||||+++|..|+..+. .||+||++|..++++|.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 3455899999999998877 9999977999999885 899999999999999975
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.43 E-value=1.2e-14 Score=98.36 Aligned_cols=52 Identities=35% Similarity=0.773 Sum_probs=46.5
Q ss_pred ccccceeccccccceEEc--cCCCcccccchhhcCC----CCccccccccceeecccC
Q 026347 189 MPDLCVICLEQEYNAVFV--PCGHMCCCIICSWHLT----NCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~----~CpiCR~~i~~~~~~~~~ 240 (240)
++..|+||++++++++++ ||||+++|..|+..+. .||+||++|..++++|.+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 345899999999999988 9999988999998874 599999999999999964
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.41 E-value=5.6e-14 Score=99.00 Aligned_cols=50 Identities=42% Similarity=1.098 Sum_probs=46.8
Q ss_pred ccceeccccccceEEccCCCcccccchhhcCCCCccccccccceeecccC
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~i~~~~~~~~~ 240 (240)
..|+||++.+.+++++||||.++|..|+..++.||+||++|...+++|.+
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 47999999999999999999977999999999999999999999999853
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.38 E-value=1.2e-13 Score=95.99 Aligned_cols=51 Identities=33% Similarity=0.853 Sum_probs=46.8
Q ss_pred cccceeccccccceEEccCCCcccccchhhcCCCCccccccccceeecccC
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~i~~~~~~~~~ 240 (240)
...|+||++...+++++||||.++|..|+..+..||+||++|...+++|-|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 458999999999999999999955999999999999999999999999864
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.6e-14 Score=98.33 Aligned_cols=51 Identities=35% Similarity=0.886 Sum_probs=47.1
Q ss_pred cccceeccccccceEEccCCCcccccchhhcCCCCccccccccceeecccC
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~i~~~~~~~~~ 240 (240)
...|+||++.+.+++++||||.++|..|+..+..||+||++|...+++|-|
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 458999999999999999999955999999999999999999999999864
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.11 E-value=2.2e-11 Score=108.01 Aligned_cols=51 Identities=41% Similarity=1.000 Sum_probs=46.6
Q ss_pred cccceeccccccceEEccCCCcccccchhhcCCCCccccccccceeecccC
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHLTNCPLCRRRIDQVVRTFRH 240 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CpiCR~~i~~~~~~~~~ 240 (240)
...|+||++.+.+++++||||.++|..|+..+..||+||.+|...+++|-|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 458999999999999999999966999999999999999999999999864
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.1e-11 Score=80.66 Aligned_cols=45 Identities=33% Similarity=0.819 Sum_probs=39.7
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
.+...|.||++...+++.+||||.| |..|+..| ..||+||++|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 3455899999999999999999998 99999887 479999999864
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=79.71 Aligned_cols=45 Identities=31% Similarity=0.818 Sum_probs=39.4
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcCC-------CCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHLT-------NCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-------~CpiCR~~i~~ 233 (240)
.....|.||++...+++.+||||.| |..|+..+. .||+||+++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4456899999999999999999998 999998763 79999998864
No 10
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=81.13 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=39.7
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
.....|.||++...+++++||||.| |..|+..+ ..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence 3455899999999999999999999 99999877 579999999864
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.3e-10 Score=79.28 Aligned_cols=48 Identities=27% Similarity=0.748 Sum_probs=41.6
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccceeecc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTF 238 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~~~ 238 (240)
+...|.||++...+ +++||||.| |..|+..| ..||+||+++......|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 34589999999999 889999998 99999887 47999999998776654
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.98 E-value=1.7e-10 Score=78.13 Aligned_cols=49 Identities=37% Similarity=0.859 Sum_probs=41.8
Q ss_pred cccceeccccccce-EEccCCCcccccchhhcC----CCCccccccccceeeccc
Q 026347 190 PDLCVICLEQEYNA-VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRTFR 239 (240)
Q Consensus 190 ~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~~~~ 239 (240)
...|.||++...+. +.+||||.| |..|+..| ..||+||+++...+..++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 34799999999884 889999998 99999876 589999999998776553
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.6e-10 Score=77.19 Aligned_cols=45 Identities=31% Similarity=0.759 Sum_probs=38.3
Q ss_pred cccccceeccccccce-------EEccCCCcccccchhhcC----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
.....|.||++...+. ++++|||.| |..|+..| ..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 3455899999988776 889999999 99999877 589999998864
No 14
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.93 E-value=4e-10 Score=76.55 Aligned_cols=48 Identities=27% Similarity=0.634 Sum_probs=39.2
Q ss_pred cccccceeccccc---cceEEccCCCcccccchhhcC----CCCccccccccceee
Q 026347 188 VMPDLCVICLEQE---YNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVR 236 (240)
Q Consensus 188 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~ 236 (240)
+....|.||++.. ..++.+||||.| |..|+..| ..||+||.+|....+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 3345899998765 457889999998 99999877 589999999987654
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.91 E-value=5.9e-10 Score=77.01 Aligned_cols=45 Identities=31% Similarity=0.678 Sum_probs=39.1
Q ss_pred cccccceeccccccceEEcc-CCCcccccchhhcC------CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~------~~CpiCR~~i~~ 233 (240)
.....|.||++...+++.+| |||.| |..|+..+ ..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 44568999999999999999 99999 99999776 379999998654
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.1e-10 Score=76.82 Aligned_cols=47 Identities=28% Similarity=0.516 Sum_probs=40.4
Q ss_pred cccccceeccccccceEEc-cCCCcccccchhhcC----CCCcccccccccee
Q 026347 188 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQVV 235 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~ 235 (240)
++...|.||++...+++.+ +|||.| |..|+..+ ..||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCccc
Confidence 4456899999999999887 999999 99999876 58999999987643
No 17
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=3.1e-10 Score=74.23 Aligned_cols=44 Identities=23% Similarity=0.475 Sum_probs=38.6
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC-CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-~~CpiCR~~i~~ 233 (240)
+...|.||++...+++.+||||.| |..|+..+ ..||+||+++..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcc-cHHHHccCCCCCCcCCcEeec
Confidence 345799999999999999999999 99999876 489999998864
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.90 E-value=2.6e-10 Score=88.29 Aligned_cols=43 Identities=35% Similarity=0.771 Sum_probs=38.8
Q ss_pred ccceeccccccceEEccCCCcccccchhhcC----CCCccccccccce
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 234 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~ 234 (240)
..|+||++...+++.+||||.| |..|+..| ..||+||++|...
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4799999999999999999998 99999876 4799999999764
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=6e-10 Score=75.10 Aligned_cols=45 Identities=24% Similarity=0.452 Sum_probs=39.2
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
.+...|.||++...+++.++|||.| |..|+..+ ..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3456899999999999999999999 99999865 379999999865
No 20
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.87 E-value=3.6e-10 Score=77.08 Aligned_cols=43 Identities=33% Similarity=0.829 Sum_probs=37.6
Q ss_pred cccceeccccccce-------EEccCCCcccccchhhcC----CCCccccccccc
Q 026347 190 PDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
...|.||++...+. +.++|||.| |..|+..| ..||+||+++..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccCh
Confidence 45799999988776 899999999 99999876 589999999874
No 21
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.87 E-value=6.7e-10 Score=71.91 Aligned_cols=42 Identities=36% Similarity=0.753 Sum_probs=36.4
Q ss_pred cccceeccccccc----eEEccCCCcccccchhhcC----CCCcccccccc
Q 026347 190 PDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 232 (240)
Q Consensus 190 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~ 232 (240)
...|.||++...+ ++++||||.| |..|+..| ..||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 3479999998755 8889999998 99999887 58999999875
No 22
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.86 E-value=4.6e-10 Score=74.80 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=39.4
Q ss_pred ccceeccccccce-------EEccCCCcccccchhhcC----CCCccccccccc--eeecc
Q 026347 191 DLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 238 (240)
Q Consensus 191 ~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~--~~~~~ 238 (240)
..|.||++...+. +.++|||.| |..|+..| ..||+||+++.. +.++|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 4799999987765 788999999 99999876 589999999874 55555
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=77.69 Aligned_cols=45 Identities=29% Similarity=0.631 Sum_probs=38.5
Q ss_pred cccccceeccccccc----eEEccCCCcccccchhhcC-------CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYN----AVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~-------~~CpiCR~~i~~ 233 (240)
.+...|.||++...+ ++.+||||.| |..|+..+ ..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345589999999988 9999999999 99999876 479999998753
No 24
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.83 E-value=1.9e-09 Score=74.99 Aligned_cols=46 Identities=24% Similarity=0.534 Sum_probs=37.0
Q ss_pred cccccceecccccc---ceEEccCCCcccccchhhcC----CCCccccccccce
Q 026347 188 VMPDLCVICLEQEY---NAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQV 234 (240)
Q Consensus 188 ~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~ 234 (240)
.....|.||++... .+..+||||.| |..|+..| ..||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34558999987654 44678999998 99999876 5899999998763
No 25
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.80 E-value=1.3e-09 Score=78.37 Aligned_cols=44 Identities=27% Similarity=0.535 Sum_probs=37.5
Q ss_pred ccccceeccccccc---eEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
....|.||++.... ++.+||||.| |..|+..| ..||+||.++..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 45589999988766 7889999999 99999887 589999998864
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=75.22 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=38.3
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC-----------CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----------TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----------~~CpiCR~~i~~ 233 (240)
+...|.||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 455899999999999999999999 99999864 379999999864
No 27
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.80 E-value=1.9e-09 Score=69.79 Aligned_cols=42 Identities=36% Similarity=0.758 Sum_probs=35.6
Q ss_pred cccceeccccccc---eEEcc-CCCcccccchhhcC----CCCcccccccc
Q 026347 190 PDLCVICLEQEYN---AVFVP-CGHMCCCIICSWHL----TNCPLCRRRID 232 (240)
Q Consensus 190 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CpiCR~~i~ 232 (240)
...|.||++.... ++.+| |||.| |..|+..| ..||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 3479999998776 77787 99999 99999887 48999999874
No 28
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1.4e-09 Score=75.16 Aligned_cols=44 Identities=27% Similarity=0.639 Sum_probs=36.7
Q ss_pred ccccceeccccccc---eEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
....|.||++.... +..+||||.| |..|+..| ..||+||+++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34589999987655 4788999998 99999887 589999998865
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.3e-09 Score=75.00 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=38.9
Q ss_pred cccccceeccccccc---eEEccCCCcccccchhhcC----CCCccccccccceeec
Q 026347 188 VMPDLCVICLEQEYN---AVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~~ 237 (240)
.....|.||++.... ...+||||.| |..|+..| ..||+||+++.....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCccccccccc
Confidence 335589999988643 4566999998 99999877 5899999999876543
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.77 E-value=2.6e-09 Score=76.65 Aligned_cols=44 Identities=32% Similarity=0.692 Sum_probs=38.4
Q ss_pred cccccceeccccccceEEcc-CCCcccccchhhcC------CCCcccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL------TNCPLCRRRID 232 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~------~~CpiCR~~i~ 232 (240)
.+...|.||++...+++.+| |||.| |..|+..+ ..||+||+++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34568999999999999999 99999 99999766 38999999873
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.76 E-value=4.9e-09 Score=73.58 Aligned_cols=45 Identities=33% Similarity=0.573 Sum_probs=38.8
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----------CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------~~CpiCR~~i~~ 233 (240)
.....|.||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456899999999999999999999 99998763 479999999864
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=4.6e-09 Score=73.72 Aligned_cols=45 Identities=31% Similarity=0.659 Sum_probs=38.9
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----------CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----------TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------~~CpiCR~~i~~ 233 (240)
.....|.||++...+++.+||||.| |..|+..+ ..||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456899999999999999999999 99998763 489999998874
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=5.3e-09 Score=69.67 Aligned_cols=39 Identities=36% Similarity=0.878 Sum_probs=34.1
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC-------CCCccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLC 227 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CpiC 227 (240)
.+...|.||++...+++.+||||.| |..|+..+ ..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 3456899999999999999999999 99999766 279998
No 34
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.75 E-value=2.1e-09 Score=75.22 Aligned_cols=50 Identities=28% Similarity=0.717 Sum_probs=39.0
Q ss_pred ccccceeccccc--cceEEcc--CCCcccccchhhcCC-----CCccccccccceeeccc
Q 026347 189 MPDLCVICLEQE--YNAVFVP--CGHMCCCIICSWHLT-----NCPLCRRRIDQVVRTFR 239 (240)
Q Consensus 189 ~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~-----~CpiCR~~i~~~~~~~~ 239 (240)
++..|+||++.. .+..++| |||.| |..|+..+. .||.||+++......|+
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred cCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 345899999977 3456666 99999 999997763 79999999987554443
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.73 E-value=3e-09 Score=79.54 Aligned_cols=45 Identities=36% Similarity=0.783 Sum_probs=39.6
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
.+...|.||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4456899999999999999999999 99999877 279999999864
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.71 E-value=2.4e-09 Score=81.17 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=38.5
Q ss_pred cccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
...|+||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45899999999999999999999 99999765 389999999976
No 37
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.69 E-value=4.9e-09 Score=93.84 Aligned_cols=47 Identities=34% Similarity=0.832 Sum_probs=41.7
Q ss_pred ccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccceeecc
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRTF 238 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~~~~~~ 238 (240)
..|+||++...+++++||||.| |..|+..| ..||+||+++.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 5899999999999999999999 99999765 58999999998876553
No 38
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.68 E-value=3.1e-09 Score=77.69 Aligned_cols=43 Identities=30% Similarity=0.809 Sum_probs=38.4
Q ss_pred cccceeccccccceEE-ccCCCcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
...|.||++...+++. ++|||.| |..|+..| ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4589999999999999 9999999 99999876 489999999854
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=3.5e-09 Score=71.04 Aligned_cols=42 Identities=31% Similarity=0.641 Sum_probs=34.9
Q ss_pred ccceeccc-cccce----EEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 191 DLCVICLE-QEYNA----VFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 191 ~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
..|+||++ ...++ ++++|||.| |..|+..+ ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 55554 578999999 99999877 479999999865
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=6.8e-09 Score=67.75 Aligned_cols=39 Identities=33% Similarity=0.825 Sum_probs=34.0
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC-------CCCccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLC 227 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CpiC 227 (240)
.+...|.||++...+++.+||||.| |..|+..+ ..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 3455899999999999999999998 99999776 479998
No 41
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.68 E-value=4.9e-09 Score=72.84 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=38.7
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
+...|.||++...+++.+||||.| |..|+..+ ..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 355899999999999999999999 99999765 479999999864
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.62 E-value=6.5e-09 Score=81.67 Aligned_cols=44 Identities=34% Similarity=0.677 Sum_probs=38.9
Q ss_pred cccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccce
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQV 234 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~~ 234 (240)
...|.||++...+++.+||||.| |..|+..+ ..||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45899999999999999999999 99999876 3799999998753
No 43
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.62 E-value=6.8e-09 Score=75.53 Aligned_cols=44 Identities=30% Similarity=0.661 Sum_probs=38.6
Q ss_pred ccccceeccccccceEEc-cCCCcccccchhhcC----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
+...|.||++...+++.+ ||||.| |..|+..+ ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 345899999999999888 999999 99999876 489999998875
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.61 E-value=9.8e-09 Score=75.92 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=39.0
Q ss_pred ccccceeccccccceEEc-cCCCcccccchhhcC----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
+...|.||++...+++.+ ||||.| |..|+..+ ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 345899999999999987 999999 99999877 589999999875
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=9.2e-09 Score=76.25 Aligned_cols=42 Identities=38% Similarity=0.869 Sum_probs=37.2
Q ss_pred ccceeccccccceEEccCCCcccccchhhcC-------CCCccccccccc
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWHL-------TNCPLCRRRIDQ 233 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CpiCR~~i~~ 233 (240)
..|.||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4799999999999999999999 99999766 279999998864
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.55 E-value=2.8e-08 Score=74.66 Aligned_cols=45 Identities=31% Similarity=0.580 Sum_probs=39.9
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
.....|+||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456899999999999999999999 99999876 389999999876
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.55 E-value=1.3e-08 Score=80.85 Aligned_cols=45 Identities=29% Similarity=0.657 Sum_probs=38.7
Q ss_pred cccccceeccccccceEEc-cCCCcccccchhhcC-----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
.....|+||++...+++.+ ||||.| |..|+..| ..||+||.++..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3455899999999999887 999999 99999876 369999999853
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.54 E-value=1.8e-08 Score=75.64 Aligned_cols=42 Identities=26% Similarity=0.524 Sum_probs=38.1
Q ss_pred cccceeccccccceEEc-cCCCcccccchhhcC--CCCcccccccc
Q 026347 190 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL--TNCPLCRRRID 232 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~--~~CpiCR~~i~ 232 (240)
...|.||++...+++.+ ||||.| |..|+..+ ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhcCCCcCCCCcCc
Confidence 45899999999999999 999999 99999888 57999999885
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.50 E-value=1.9e-08 Score=74.90 Aligned_cols=42 Identities=26% Similarity=0.729 Sum_probs=34.1
Q ss_pred ccceeccccccce------------------EEccCCCcccccchhhcC---------CCCccccccccc
Q 026347 191 DLCVICLEQEYNA------------------VFVPCGHMCCCIICSWHL---------TNCPLCRRRIDQ 233 (240)
Q Consensus 191 ~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~---------~~CpiCR~~i~~ 233 (240)
..|.||++..... .++||||.| |..|+..| ..||+||+.+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3799999987443 378999999 99999765 279999998754
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.49 E-value=5.5e-08 Score=68.95 Aligned_cols=45 Identities=11% Similarity=-0.024 Sum_probs=39.8
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
.+...|+||++-..+++.+||||.| |..|+..+ ..||+||+++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3456999999999999999999999 99999876 589999998764
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.49 E-value=7.6e-08 Score=70.13 Aligned_cols=45 Identities=13% Similarity=-0.020 Sum_probs=39.8
Q ss_pred cccccceeccccccceEEccCC-CcccccchhhcC----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCG-HMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
.+...|+||++-..+++.+||| |.| |..|+..+ ..||+||+++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3456999999999999999999 999 99999876 479999998864
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.49 E-value=2.4e-08 Score=74.72 Aligned_cols=44 Identities=30% Similarity=0.577 Sum_probs=38.9
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
+...|+||++...+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 345899999999999999999999 99999765 479999999865
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=3.7e-08 Score=69.13 Aligned_cols=43 Identities=30% Similarity=0.568 Sum_probs=33.2
Q ss_pred cccceeccccccc--------------eEEc-cCCCcccccchhhcC----CCCccccccccc
Q 026347 190 PDLCVICLEQEYN--------------AVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
.+.|.||++...+ ++.+ +|||.| +..|+.+| ..||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcch
Confidence 3468888877644 4455 599999 99999887 589999998754
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.45 E-value=7.7e-08 Score=70.37 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=39.8
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
.+...|+||++-..+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence 3456999999999999999999999 99999876 489999998864
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.40 E-value=4.4e-08 Score=74.32 Aligned_cols=43 Identities=33% Similarity=0.829 Sum_probs=37.7
Q ss_pred cccceeccccccce-------EEccCCCcccccchhhcC----CCCccccccccc
Q 026347 190 PDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
...|.||++...++ +.++|||.| |..|+.++ ..||+||+++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence 45799999998877 899999999 99999877 489999999874
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.37 E-value=4.5e-08 Score=76.06 Aligned_cols=43 Identities=26% Similarity=0.553 Sum_probs=38.1
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC-----CCCccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRI 231 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i 231 (240)
+....|.||++...+++.++|||.| |..|+..+ ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 4456999999999999999999999 99999877 3799999975
No 57
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.35 E-value=9.6e-08 Score=72.41 Aligned_cols=49 Identities=29% Similarity=0.708 Sum_probs=40.3
Q ss_pred ccccceeccccccce-------EEccCCCcccccchhhcC----CCCccccccccc--eeecc
Q 026347 189 MPDLCVICLEQEYNA-------VFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 238 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~--~~~~~ 238 (240)
+...|.||++...+. +.++|||.| |..|+..| ..||+||.++.. +.++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 345799999987765 888999999 99999876 689999999875 45554
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=2.2e-07 Score=79.07 Aligned_cols=44 Identities=16% Similarity=-0.024 Sum_probs=38.8
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
....|+||++-..+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence 455899999999999999999999 99999876 249999999864
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.23 E-value=3e-07 Score=67.91 Aligned_cols=42 Identities=26% Similarity=0.549 Sum_probs=33.8
Q ss_pred cccceeccccccc------------------eEEccCCCcccccchhhcC----CCCcccccccc
Q 026347 190 PDLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 232 (240)
Q Consensus 190 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~ 232 (240)
.+.|.||++.... .+.+||+|.| +..|+..| ..||+||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 3479999887553 4668999999 99999887 48999999853
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.21 E-value=4.1e-07 Score=72.46 Aligned_cols=45 Identities=31% Similarity=0.580 Sum_probs=39.9
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
++...|+||++...+++.++|||.| |..|+..+ ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 3456899999999999999999999 99999876 389999999876
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.12 E-value=2.8e-06 Score=68.38 Aligned_cols=45 Identities=16% Similarity=-0.047 Sum_probs=39.3
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC-----CCCccccccccc
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
.....|+||++-..+++.+||||.| |..|+..+ ..||+||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3456999999999999999999999 99998766 259999998865
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.07 E-value=5.6e-07 Score=67.57 Aligned_cols=41 Identities=27% Similarity=0.577 Sum_probs=0.0
Q ss_pred ccceeccccccc------------------eEEccCCCcccccchhhcC----CCCcccccccc
Q 026347 191 DLCVICLEQEYN------------------AVFVPCGHMCCCIICSWHL----TNCPLCRRRID 232 (240)
Q Consensus 191 ~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~ 232 (240)
+.|.||++...+ ++.++|+|.| +..|+..| ..||+||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 589999987654 2335999999 99999887 47999999853
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=2.3e-06 Score=61.62 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=35.4
Q ss_pred ccccceeccccccceEEcc-CCCcccccchhhcC----------CCCcc--cccc
Q 026347 189 MPDLCVICLEQEYNAVFVP-CGHMCCCIICSWHL----------TNCPL--CRRR 230 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~----------~~Cpi--CR~~ 230 (240)
....|+||++-..+++.+| |||.| |..|+..+ ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3568999999999999996 99999 99998765 28999 9855
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=4.4e-06 Score=58.39 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=35.1
Q ss_pred cccceeccccc--cceEEccCC-----CcccccchhhcC------CCCccccccccc
Q 026347 190 PDLCVICLEQE--YNAVFVPCG-----HMCCCIICSWHL------TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~------~~CpiCR~~i~~ 233 (240)
...|.||++.. .+.+++||. |.| ...|+.+| ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45899999765 346678996 999 89999988 379999998864
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.89 E-value=1.3e-05 Score=67.93 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=38.4
Q ss_pred CcccccceeccccccceEEc-cCCCcccccchhhcC------CCCcc--ccccccc
Q 026347 187 RVMPDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPL--CRRRIDQ 233 (240)
Q Consensus 187 ~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~Cpi--CR~~i~~ 233 (240)
......|+||++...++|.. .|||.| |..|+..+ ..||+ ||+.+..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34456999999999999974 999999 99999876 26999 9987754
No 66
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.68 E-value=1.6e-05 Score=57.26 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=34.3
Q ss_pred cceeccccccc-eEEccCCCcccccchhhcC-----CCCccccccccceeec
Q 026347 192 LCVICLEQEYN-AVFVPCGHMCCCIICSWHL-----TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 192 ~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~i~~~~~~ 237 (240)
-|..|--.... ..++||.|+| |.+|+..+ +.||.|+.+|.++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 36666555443 4578999998 99999653 5899999999987654
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.59 E-value=9.1e-06 Score=58.24 Aligned_cols=40 Identities=23% Similarity=0.662 Sum_probs=30.8
Q ss_pred cccceeccccccceEE---ccCCCcccccchhhcC------------CCCcc--cccc
Q 026347 190 PDLCVICLEQEYNAVF---VPCGHMCCCIICSWHL------------TNCPL--CRRR 230 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~~------------~~Cpi--CR~~ 230 (240)
...|.||++....... .+|||.| |..|.... ..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4479999988665433 4899999 99997543 27999 9988
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.33 E-value=6.8e-05 Score=49.48 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=40.1
Q ss_pred cccceeccccccceEEc-cCCCcccccchhhcC----CCCccccccccc--eeecc
Q 026347 190 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL----TNCPLCRRRIDQ--VVRTF 238 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----~~CpiCR~~i~~--~~~~~ 238 (240)
...|+||++-..++++. +|||.| +..|+..| .+||++++++.. ++++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 35799999999999999 999999 99999887 579999998854 34443
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.99 E-value=0.00016 Score=47.47 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=33.5
Q ss_pred ccccceeccccccceEEccCCCc----ccccchhhcC------CCCcccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHM----CCCIICSWHL------TNCPLCRRRID 232 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~------~~CpiCR~~i~ 232 (240)
+...|.||++...+..+.||.+. ++-..|+.+| ..||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34589999988776667897642 3478899887 47999998764
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.36 E-value=0.0026 Score=43.46 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=34.2
Q ss_pred ccccceeccccccceEE-ccCCCcccccchhhcC------CCCccccccccce
Q 026347 189 MPDLCVICLEQEYNAVF-VPCGHMCCCIICSWHL------TNCPLCRRRIDQV 234 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~------~~CpiCR~~i~~~ 234 (240)
....|.||++....... ..|+|.| -..|+.+| .+||+||++....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 34589999987654332 3799999 78999866 4799999987654
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.23 E-value=0.001 Score=58.39 Aligned_cols=45 Identities=20% Similarity=0.552 Sum_probs=34.2
Q ss_pred ccccceeccccccc--------eEEccCCCcccccchhhcC---------------CCCccccccccce
Q 026347 189 MPDLCVICLEQEYN--------AVFVPCGHMCCCIICSWHL---------------TNCPLCRRRIDQV 234 (240)
Q Consensus 189 ~~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~---------------~~CpiCR~~i~~~ 234 (240)
....|.|||+.... +...+|||.| ...|...| ..||.||++|+..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 34479999986654 2234799999 89999776 1599999999753
No 72
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=88.24 E-value=0.58 Score=36.18 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=29.2
Q ss_pred ccccceecccccc-----ceEEccCCCcccccchhhcC-----CCCcccccc
Q 026347 189 MPDLCVICLEQEY-----NAVFVPCGHMCCCIICSWHL-----TNCPLCRRR 230 (240)
Q Consensus 189 ~~~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~-----~~CpiCR~~ 230 (240)
....|.+|..... -.+-..|.|.+ |..|.... +.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 4568999998753 23445788888 89997433 578888754
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.09 E-value=0.48 Score=33.44 Aligned_cols=48 Identities=25% Similarity=0.673 Sum_probs=36.4
Q ss_pred cccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccceeec
Q 026347 188 VMPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~~~~~ 237 (240)
....-|..|.-..+.. +.|.--++|..|...+ ..||||..++...+++
T Consensus 26 ~G~~nCKsCWf~~k~L--V~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGL--VECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCCCCSSCSCCSSE--EECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cCcccChhhccccCCe--eeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3455899999877754 4688555699999877 4899999988776543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=87.54 E-value=0.13 Score=36.47 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=23.8
Q ss_pred ccceecccc-ccceEE--ccCCCcccccchhhc
Q 026347 191 DLCVICLEQ-EYNAVF--VPCGHMCCCIICSWH 220 (240)
Q Consensus 191 ~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~ 220 (240)
..|.||.+. +..++. ++|+|.+ |..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence 479999975 556666 8999999 9999876
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=83.95 E-value=0.3 Score=33.45 Aligned_cols=31 Identities=39% Similarity=0.757 Sum_probs=26.0
Q ss_pred ccccceeccccccceEEccCC----Ccccccchhhc
Q 026347 189 MPDLCVICLEQEYNAVFVPCG----HMCCCIICSWH 220 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~ 220 (240)
....|.+|.++-.+.-|+.|- |.| |..|...
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~ 48 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRE 48 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCee-eccccHH
Confidence 345899999999999888885 888 9999764
No 76
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=83.87 E-value=1.4 Score=33.25 Aligned_cols=40 Identities=25% Similarity=0.564 Sum_probs=28.3
Q ss_pred cccceecccccc-----ceEEccCCCcccccchhhcC--------CCCcccccc
Q 026347 190 PDLCVICLEQEY-----NAVFVPCGHMCCCIICSWHL--------TNCPLCRRR 230 (240)
Q Consensus 190 ~~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~--------~~CpiCR~~ 230 (240)
...|.+|..... ..+-..|.|.+ |..|.... +.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 458999998773 22445788888 88997633 468888754
No 77
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=78.30 E-value=0.82 Score=37.88 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=32.1
Q ss_pred cccceeccccccceEEc-cCCCcccccchhhcC------CCCccccccccce
Q 026347 190 PDLCVICLEQEYNAVFV-PCGHMCCCIICSWHL------TNCPLCRRRIDQV 234 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CpiCR~~i~~~ 234 (240)
-..|.+|++-......= .|+|.+ -..|...+ ..||.|+.+...-
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34799999876544332 388888 78998765 3899999886654
No 78
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=63.11 E-value=3.4 Score=36.46 Aligned_cols=43 Identities=26% Similarity=0.584 Sum_probs=30.7
Q ss_pred ccccceeccccccceE-EccCCCcccccchhh--------cCCCCcccccccc
Q 026347 189 MPDLCVICLEQEYNAV-FVPCGHMCCCIICSW--------HLTNCPLCRRRID 232 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~--------~~~~CpiCR~~i~ 232 (240)
....|++-+.....++ -..|.|+- |++-.. ..+.||+|.+.+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCcccC
Confidence 3458998888777654 57899997 666531 2369999988763
No 79
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=58.28 E-value=1.3 Score=28.41 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=13.4
Q ss_pred cccccceecccc-ccceEEccCCCcc
Q 026347 188 VMPDLCVICLEQ-EYNAVFVPCGHMC 212 (240)
Q Consensus 188 ~~~~~C~iC~~~-~~~~~~~pCgH~~ 212 (240)
++.+.|.||+.. +.+ -|||.|
T Consensus 7 ~d~~~C~iC~KTKFAD----G~Gh~C 28 (62)
T 2a20_A 7 GDAPTCGICHKTKFAD----GCGHNC 28 (62)
T ss_dssp SCCCCCSSSSCSCCCS----SCCEEB
T ss_pred CCcchhhhhccceecc----CCCccc
Confidence 445689999854 333 367764
No 80
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=57.07 E-value=5 Score=35.21 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=31.1
Q ss_pred ccccceeccccccceE-EccCCCcccccchhh--------cCCCCcccccccc
Q 026347 189 MPDLCVICLEQEYNAV-FVPCGHMCCCIICSW--------HLTNCPLCRRRID 232 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~--------~~~~CpiCR~~i~ 232 (240)
....|++-+.....++ -..|.|+- |++-.. ..+.||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~Hlq-CFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQ-CFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCC-CEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCc-cCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 3457998888777654 57899997 666532 2369999998774
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=51.90 E-value=8.8 Score=24.41 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=7.8
Q ss_pred ccccceecccc
Q 026347 189 MPDLCVICLEQ 199 (240)
Q Consensus 189 ~~~~C~iC~~~ 199 (240)
....|.+|.+.
T Consensus 8 ~~~~C~vC~~~ 18 (61)
T 1mm2_A 8 HMEFCRVCKDG 18 (61)
T ss_dssp SCSSCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 34579999863
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.87 E-value=5.1 Score=25.01 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=8.1
Q ss_pred ccccceecccc
Q 026347 189 MPDLCVICLEQ 199 (240)
Q Consensus 189 ~~~~C~iC~~~ 199 (240)
....|.+|...
T Consensus 8 ~~~~C~vC~~~ 18 (56)
T 2yql_A 8 HEDFCSVCRKS 18 (56)
T ss_dssp SCCSCSSSCCS
T ss_pred CCCCCccCCCC
Confidence 34579999875
No 83
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=47.31 E-value=5.6 Score=28.12 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=27.5
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC---CCCccccccccce
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---TNCPLCRRRIDQV 234 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CpiCR~~i~~~ 234 (240)
+...|+.|...-.. . |..+.|..|.... ..||-|.+++...
T Consensus 31 M~~~CP~Cq~eL~~----~-g~~~hC~~C~~~f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 31 MELHCPQCQHVLDQ----D-NGHARCRSCGEFIEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCCBCSSSCSBEEE----E-TTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred ccccCccCCCccee----c-CCEEECccccchhhccccCcchhhHHHHH
Confidence 45789999855332 1 3344488887665 4799998887654
No 84
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.77 E-value=9.9 Score=24.28 Aligned_cols=35 Identities=26% Similarity=0.766 Sum_probs=25.2
Q ss_pred cceeccccccceE-E--ccCCCcccccchhh----cCCCCccc
Q 026347 192 LCVICLEQEYNAV-F--VPCGHMCCCIICSW----HLTNCPLC 227 (240)
Q Consensus 192 ~C~iC~~~~~~~~-~--~pCgH~~~C~~C~~----~~~~CpiC 227 (240)
.|..|.....+.. + -.|++.| |.+|.. .+..||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~F-C~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVF-CVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCB-CHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCc-ccchhHHHHhhccCCcCC
Confidence 5888888775433 2 3677888 999974 44689988
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.14 E-value=12 Score=25.92 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=9.3
Q ss_pred cccccceeccccc
Q 026347 188 VMPDLCVICLEQE 200 (240)
Q Consensus 188 ~~~~~C~iC~~~~ 200 (240)
.....|.+|.+.-
T Consensus 23 ~n~~~C~vC~~~g 35 (88)
T 1fp0_A 23 DSATICRVCQKPG 35 (88)
T ss_dssp SSSSCCSSSCSSS
T ss_pred CCCCcCcCcCCCC
Confidence 3455899999753
No 86
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.51 E-value=6 Score=33.97 Aligned_cols=42 Identities=19% Similarity=0.513 Sum_probs=31.4
Q ss_pred ccccceeccccccceEEc----cCCCc-ccccchhhcC----CCCcccccc
Q 026347 189 MPDLCVICLEQEYNAVFV----PCGHM-CCCIICSWHL----TNCPLCRRR 230 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~----pCgH~-~~C~~C~~~~----~~CpiCR~~ 230 (240)
....|+||-..+...++. .=|++ ..|.-|...| ..||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 356899999999887665 24542 3499998887 389999875
No 87
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.94 E-value=73 Score=21.32 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026347 135 IAKRAIHYILQRKRRWELHRR 155 (240)
Q Consensus 135 l~~~~~r~~~~~r~~~~~~~~ 155 (240)
+.+++...+..+|+-.+.+++
T Consensus 30 liwk~~~~i~DrrE~~kFEkE 50 (79)
T 2knc_B 30 LIWKLLITIHDRKEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566566665555543
No 88
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=39.98 E-value=11 Score=26.16 Aligned_cols=43 Identities=35% Similarity=0.736 Sum_probs=28.5
Q ss_pred cccceeccccccce----EEccC---CCcccccchhhcC-----CCCccccccccc
Q 026347 190 PDLCVICLEQEYNA----VFVPC---GHMCCCIICSWHL-----TNCPLCRRRIDQ 233 (240)
Q Consensus 190 ~~~C~iC~~~~~~~----~~~pC---gH~~~C~~C~~~~-----~~CpiCR~~i~~ 233 (240)
...|.||-+..-.. +|+-| +-- .|..|+.-. +.||.|+.+..+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCcccc
Confidence 45899998864321 45444 333 388887532 689999988764
No 89
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.45 E-value=84 Score=21.02 Aligned_cols=36 Identities=17% Similarity=-0.060 Sum_probs=22.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026347 123 ASFGLTIFGTFLIAKRAIHYILQRKRRWELHRRVLA 158 (240)
Q Consensus 123 ~~i~~~~~gv~ll~~~~~r~~~~~r~~~~~~~~~~~ 158 (240)
++++.+++.+.++...++|.+..-..+++..+--.+
T Consensus 15 ~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE 50 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666677778888777777666644333
No 90
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.98 E-value=3.4 Score=23.42 Aligned_cols=9 Identities=33% Similarity=1.209 Sum_probs=4.3
Q ss_pred Ccccccccc
Q 026347 224 CPLCRRRID 232 (240)
Q Consensus 224 CpiCR~~i~ 232 (240)
||+|.+.+.
T Consensus 8 CP~C~~~l~ 16 (34)
T 3mjh_B 8 CPQCMKSLG 16 (34)
T ss_dssp CTTTCCEES
T ss_pred CcHHHHHcC
Confidence 555544443
No 91
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=36.81 E-value=46 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=17.5
Q ss_pred ecccCCCceeEEeeeEEecCCCCeEE
Q 026347 66 ERLLPTGTSLTVVGEAVKDDIGTVRI 91 (240)
Q Consensus 66 E~~L~~g~~lt~vGe~~~d~~g~~~i 91 (240)
...+++|+.+-+.|.+.. -+|...|
T Consensus 77 ~~~~~~g~yVrV~G~l~~-f~g~~qi 101 (132)
T 3kdf_D 77 NTVVPPETYVKVAGHLRS-FQNKKSL 101 (132)
T ss_dssp -CCCCTTCEEEEEEEEEE-ETTEEEE
T ss_pred cccccCCCEEEEEEEEEe-ECCEEEE
Confidence 356889999999999643 3565444
No 92
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=36.34 E-value=19 Score=22.82 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=7.9
Q ss_pred ccccceecccc
Q 026347 189 MPDLCVICLEQ 199 (240)
Q Consensus 189 ~~~~C~iC~~~ 199 (240)
....|.+|...
T Consensus 10 ~~~~C~vC~~~ 20 (61)
T 2l5u_A 10 HQDYCEVCQQG 20 (61)
T ss_dssp CCSSCTTTSCC
T ss_pred CCCCCccCCCC
Confidence 34579999874
No 93
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.10 E-value=15 Score=24.06 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=22.8
Q ss_pred cccccceeccccccceEEccC-CCcccccchhhcC
Q 026347 188 VMPDLCVICLEQEYNAVFVPC-GHMCCCIICSWHL 221 (240)
Q Consensus 188 ~~~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~~ 221 (240)
++..-|.||.+. ....-+.| |-++ |..|...+
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLY-C~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLY-CARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEE-CSSHHHHH
T ss_pred cCCCeeEEeCCC-CeEEecCCCCcee-hHHHHHHH
Confidence 345589999988 34556788 6677 88887654
No 94
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=30.41 E-value=29 Score=26.02 Aligned_cols=48 Identities=27% Similarity=0.378 Sum_probs=32.0
Q ss_pred CCCeeEEEecCCCcccceeeeeeeeeecCcccccccccccccceeeeeeeeeecccCCCceeEEeeeEEec
Q 026347 14 DGTGRAFVVGARGATGFVLTVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVGEAVKD 84 (240)
Q Consensus 14 d~~g~V~V~~~~~a~~~~l~~v~~~f~~~~~s~~~~~~~~~~g~~~~G~~~~E~~L~~g~~lt~vGe~~~d 84 (240)
|+.+||.|+.|....+-|-++...+|. -++ +..|+..| +|-+|||+ .|
T Consensus 67 eg~~RIYiVEPtG~fEdDPNvTdKkFP-GNP--------------TrSYRS~~-------PLrIvgEv-~~ 114 (143)
T 2hw2_A 67 EGRGRIFIVEPEGAIEDDPNVTDKKLP-GNP--------------TRSYRTRE-------PVWIVGEL-TD 114 (143)
T ss_dssp SSCCEEEEEEESSCCEECGGGSSSSSS-SCT--------------TCEEEESS-------CEEEEEEE-CC
T ss_pred CCCCeEEEEccCCCcccCCCccCCCCC-CCC--------------ccccccCC-------CcEEEEEe-cc
Confidence 567889999999888855555555553 332 44555543 67899994 44
No 95
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=30.18 E-value=41 Score=21.64 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=22.0
Q ss_pred ccceeccccccceEEccCCCcccccchhhc----C----CCCcccccc
Q 026347 191 DLCVICLEQEYNAVFVPCGHMCCCIICSWH----L----TNCPLCRRR 230 (240)
Q Consensus 191 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----~----~~CpiCR~~ 230 (240)
..|.||.+.-.-+.---|...| ...|... + +.||.|...
T Consensus 13 ~~C~vC~~~~~ll~Cd~C~~~~-H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDGTDVLRCTHCAAAF-HWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCCTTCEECSSSCCEE-CHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCCCeEEECCCCCCce-ecccCCCccCcCCCCCEECccccCC
Confidence 4699998654311112354444 4556532 2 489999754
No 96
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.83 E-value=27 Score=27.45 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=17.3
Q ss_pred ccCCCcccccchhhcCC-CCccccccccceee
Q 026347 206 VPCGHMCCCIICSWHLT-NCPLCRRRIDQVVR 236 (240)
Q Consensus 206 ~pCgH~~~C~~C~~~~~-~CpiCR~~i~~~~~ 236 (240)
..|||.+. . ...+ .||+|..+-..+..
T Consensus 159 ~~CG~~~~-g---~~~p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 159 RNCGYVHE-G---TGAPELCPACAHPKAHFEL 186 (191)
T ss_dssp TTTCCEEE-E---EECCSBCTTTCCBGGGEEE
T ss_pred CCCCCEee-C---CCCCCCCCCCcCCHHHHHh
Confidence 46777763 1 1233 89999988666544
No 97
>2kll_A Interleukin-33; beta-trefoil, cytokine, polymorphism, secreted; NMR {Homo sapiens}
Probab=29.07 E-value=71 Score=23.75 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=21.4
Q ss_pred cccccceEEeCCCeeEEEecCCCccc
Q 026347 4 MSKEVPWYLDDGTGRAFVVGARGATG 29 (240)
Q Consensus 4 ~~~~vPf~L~d~~g~V~V~~~~~a~~ 29 (240)
|.++|-|.|+|+.-.|.|.+-.....
T Consensus 21 NDQsitFv~EdgsYeIyveDl~kdqe 46 (161)
T 2kll_A 21 NDQSITFALEDESYEIYVEDLKKDEK 46 (161)
T ss_dssp TTEEEEEEECSSCEEEEEEECCSCCC
T ss_pred cCceEEEEEeCCcEEEEehhhccchh
Confidence 45688999999999999988776555
No 98
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.99 E-value=24 Score=27.30 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=17.9
Q ss_pred ccCCCcccccchhhcC-CCCccccccccceeec
Q 026347 206 VPCGHMCCCIICSWHL-TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 206 ~pCgH~~~C~~C~~~~-~~CpiCR~~i~~~~~~ 237 (240)
..|||+.. ... ..||+|..+-..+.++
T Consensus 142 ~~CG~i~~-----~~~p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 142 PICGYTAV-----DEAPEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp TTTCCEEE-----SCCCSBCTTTCCBGGGCEEE
T ss_pred CCCCCeeC-----CCCCCCCCCCCCCHHHceec
Confidence 36777763 123 3899999887766543
No 99
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=28.18 E-value=51 Score=32.69 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=36.3
Q ss_pred ccccceeccccccceEEccCCCcccccchhhcC----CCCccccccccc
Q 026347 189 MPDLCVICLEQEYNAVFVPCGHMCCCIICSWHL----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CpiCR~~i~~ 233 (240)
+...|+|-++--+++|++|.||...=..++.+| .+||+-|++++.
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456999999999999999999643256777666 589999998865
No 100
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=28.01 E-value=27 Score=21.03 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=11.3
Q ss_pred CCCccccccccceee
Q 026347 222 TNCPLCRRRIDQVVR 236 (240)
Q Consensus 222 ~~CpiCR~~i~~~~~ 236 (240)
..||+|..+-..+.+
T Consensus 31 w~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 31 WCCPVCGVSKDQFSP 45 (46)
T ss_dssp CBCTTTCCBGGGEEE
T ss_pred CcCcCCCCcHHHcEe
Confidence 379999988766654
No 101
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.61 E-value=29 Score=22.33 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=9.5
Q ss_pred ccchhhcC--CCCcccccccc
Q 026347 214 CIICSWHL--TNCPLCRRRID 232 (240)
Q Consensus 214 C~~C~~~~--~~CpiCR~~i~ 232 (240)
|..|+.+. +.|+.|..+|.
T Consensus 6 C~~cy~~~~~~~C~~C~~~I~ 26 (77)
T 2egq_A 6 SGDCYKNFVAKKCAGCKNPIT 26 (77)
T ss_dssp CTTCCCSCCCCCCSSSCCCCC
T ss_pred chhHhchhhCccCcccCCccc
Confidence 45554443 35555555554
No 102
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=27.25 E-value=24 Score=26.16 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=26.7
Q ss_pred cccceeccccccceEEccCCCcccccchhhcC---------------CCCcccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWHL---------------TNCPLCRRR 230 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CpiCR~~ 230 (240)
.+.|.+|-+.-.-..-=.|-..| |..|.... +.|+.|+.+
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~F-c~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEE-EHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCcCeecCCCCeeEecCCCchhh-hHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34799998764432223566777 89998631 589999754
No 103
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.25 E-value=22 Score=23.28 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=4.4
Q ss_pred CCcccccccc
Q 026347 223 NCPLCRRRID 232 (240)
Q Consensus 223 ~CpiCR~~i~ 232 (240)
.|..|..+|.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 2ehe_A 17 TCAECQQLIG 26 (82)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCccc
Confidence 4444444443
No 104
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.09 E-value=35 Score=27.57 Aligned_cols=46 Identities=26% Similarity=0.475 Sum_probs=30.1
Q ss_pred CCcccccceeccccccce----EEccCCCcccccchhhcC------------CCCcccccccc
Q 026347 186 DRVMPDLCVICLEQEYNA----VFVPCGHMCCCIICSWHL------------TNCPLCRRRID 232 (240)
Q Consensus 186 ~~~~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------------~~CpiCR~~i~ 232 (240)
...+...|.+|...+... ---.||+++ |..|.... +.|-.|-..+.
T Consensus 160 ~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~-C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 160 DWVDAEECHRCRVQFGVMTRKHHCRACGQIF-CGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CCCCCSBCTTTCCBCBTTBCCEECTTTCCEE-CTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred ccccCCCCcCcCCCCCccccccccCCCcCEe-ChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 334456899998766522 234899999 99997532 35777755443
No 105
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=27.00 E-value=16 Score=23.49 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=7.6
Q ss_pred cccceecccc
Q 026347 190 PDLCVICLEQ 199 (240)
Q Consensus 190 ~~~C~iC~~~ 199 (240)
...|.||.+.
T Consensus 8 ~~~C~vC~~~ 17 (66)
T 1xwh_A 8 EDECAVCRDG 17 (66)
T ss_dssp CCSBSSSSCC
T ss_pred CCCCccCCCC
Confidence 4479999865
No 106
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=26.53 E-value=26 Score=24.54 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=22.2
Q ss_pred ecccCCCceeEEeeeEEecC-CCCeEEeCCC
Q 026347 66 ERLLPTGTSLTVVGEAVKDD-IGTVRIQRPH 95 (240)
Q Consensus 66 E~~L~~g~~lt~vGe~~~d~-~g~~~iq~P~ 95 (240)
-+.|-.|+--|+||++-+-. .-.+.+|.|+
T Consensus 100 vealsngsvativgqvhqvqdstiptlqnpk 130 (133)
T 3f1z_A 100 VEALSNGSVATIVGQVHQVQDSTIPTLQNPK 130 (133)
T ss_dssp HTTCCTTSEEEEEEECCCCCSBSSCEEEEEE
T ss_pred hHhhcCCceeeEeeeeeeeeccccccccCCc
Confidence 36789999999999983322 3457888875
No 107
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.90 E-value=30 Score=21.56 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=12.0
Q ss_pred CCCccccccccceeec
Q 026347 222 TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 222 ~~CpiCR~~i~~~~~~ 237 (240)
+.||+|...-..+.++
T Consensus 37 w~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 37 WVCPLCGVGKDEFEEV 52 (54)
T ss_dssp CBCTTTCCBGGGEEEC
T ss_pred CcCcCCCCcHHHceEc
Confidence 4799999887766553
No 108
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.65 E-value=26 Score=22.78 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=5.2
Q ss_pred CCcccccccc
Q 026347 223 NCPLCRRRID 232 (240)
Q Consensus 223 ~CpiCR~~i~ 232 (240)
.|-.|+.++.
T Consensus 43 ~C~~C~~~L~ 52 (80)
T 2cuq_A 43 VCTGCQTPLA 52 (80)
T ss_dssp BCSSSCCBCT
T ss_pred CcccCCCcCC
Confidence 4555555553
No 109
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=24.94 E-value=24 Score=23.12 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=20.5
Q ss_pred ccceeccccccce----EEccCCCcccccchhh
Q 026347 191 DLCVICLEQEYNA----VFVPCGHMCCCIICSW 219 (240)
Q Consensus 191 ~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~ 219 (240)
..|.+|...+... ---.||+++ |..|+.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~-C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF-CQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE-CGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEE-cccccC
Confidence 4799999876532 223799999 999975
No 110
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=24.30 E-value=31 Score=20.88 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=7.9
Q ss_pred CCccccccccc
Q 026347 223 NCPLCRRRIDQ 233 (240)
Q Consensus 223 ~CpiCR~~i~~ 233 (240)
+||.|.=.|-.
T Consensus 25 rCpyCGyrii~ 35 (48)
T 4ayb_P 25 RCPYCGYKIIF 35 (48)
T ss_dssp CCTTTCCSCEE
T ss_pred ccCccCcEEEE
Confidence 79999755543
No 111
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=23.37 E-value=11 Score=24.86 Aligned_cols=31 Identities=32% Similarity=0.687 Sum_probs=23.6
Q ss_pred cccceeccccccceE-----EccCCCcccccchhhcC
Q 026347 190 PDLCVICLEQEYNAV-----FVPCGHMCCCIICSWHL 221 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~-----~~pCgH~~~C~~C~~~~ 221 (240)
++.|.+|-..+.+.+ -++|.-.. |..|+.++
T Consensus 5 g~~C~kCEq~~vn~~DqelHdlnCs~Ni-CPYC~nRl 40 (77)
T 2l7x_A 5 PQTCTICETTPVNAIDAEMHDLNCSYNI-CPYCASRL 40 (77)
T ss_dssp CCCCTTTCCCCSSHHHHHHHHHHHTTTC-CTTTCCCC
T ss_pred CceeeeeccccccHHHHHHHHcCCCccc-ChhhhccC
Confidence 458999988776653 36888887 89998877
No 112
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=23.22 E-value=92 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=30.8
Q ss_pred EeeeEEecCCCCeEEeCCCCCCeEeecCCHHHHHHHHhhH
Q 026347 77 VVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELIENLGKW 116 (240)
Q Consensus 77 ~vGe~~~d~~g~~~iq~P~~g~~~ls~~s~~~Li~~l~~~ 116 (240)
++|. ..+ +|++.+=.|.-|.|.+...+..++++++.+.
T Consensus 133 aia~-S~~-g~~~tlFDPN~GEF~v~s~~~~dliqsL~~r 170 (188)
T 1ukf_A 133 AIAC-SCE-GSQFKLFDPNLGEFQSSRSAAPQLIKGLIDH 170 (188)
T ss_dssp EEEE-EEE-TTEEEEEETTTEEEEEETTTHHHHHHHHHHH
T ss_pred eEEe-ccC-CCeEEEeCCCCceeeccHHHHHHHHHHHHHh
Confidence 4453 334 7899999999999999999999999877654
No 113
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.84 E-value=53 Score=21.99 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=29.5
Q ss_pred Ccccccceeccccccc-----eEEccCCCcccccchhhcC----CCCcccccc
Q 026347 187 RVMPDLCVICLEQEYN-----AVFVPCGHMCCCIICSWHL----TNCPLCRRR 230 (240)
Q Consensus 187 ~~~~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~----~~CpiCR~~ 230 (240)
.+....|..|.....- .+--.|.|.+ |..|-... +.|-+|-..
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rV-C~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLV-CRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEEC-CTTSEEECSTTCEEEHHHHSS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhh-cccccccCCCCCEEEeeCchh
Confidence 3455689999987543 3445788998 89996443 578887543
No 114
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=22.80 E-value=43 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.3
Q ss_pred cccceeccccccceEEccCCCccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCI 215 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~ 215 (240)
...|..|.......+-|-|||+. |.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vg-Cg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVY-CG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEE-EC
T ss_pred CCcCccccCCCCeeeeeecCccc-cC
Confidence 44799999888888889999999 74
No 115
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.73 E-value=32 Score=24.56 Aligned_cols=19 Identities=26% Similarity=0.845 Sum_probs=12.9
Q ss_pred cCCCcccccchhhcC---CCCcccccc
Q 026347 207 PCGHMCCCIICSWHL---TNCPLCRRR 230 (240)
Q Consensus 207 pCgH~~~C~~C~~~~---~~CpiCR~~ 230 (240)
.||+.| + ..+ ..||.|+..
T Consensus 72 ~CG~~F-~----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 72 KCGFVF-K----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TTCCBC-C----CCSSCCSSCSSSCCC
T ss_pred hCcCee-c----ccCCCCCCCcCCCCC
Confidence 688887 2 222 489999864
No 116
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=22.48 E-value=68 Score=26.91 Aligned_cols=81 Identities=22% Similarity=0.209 Sum_probs=45.7
Q ss_pred eeeeeeeeeecCccc--ccccccccccceeeeeeeeeecccCCCceeEEeeeEEecCCCCeEEeCCCCC----CeEeecC
Q 026347 31 VLTVGSEVFEESGRS--LVRGTLDYLQGLKMLGVKRIERLLPTGTSLTVVGEAVKDDIGTVRIQRPHKG----PFYVSPK 104 (240)
Q Consensus 31 ~l~~v~~~f~~~~~s--~~~~~~~~~~g~~~~G~~~~E~~L~~g~~lt~vGe~~~d~~g~~~iq~P~~g----~~~ls~~ 104 (240)
.+.++.|.-|..+.+ ..+.+..++. ..|+...-+-|++|..+-++-.-..+..|. ...|... +|.+..+
T Consensus 19 ~~~ivvD~RE~~~~~~~~~~~~~~~l~---~~gv~~~~~~L~vGDyiw~~~~~~~~~~~~--~~~~~~~e~vl~~~VERK 93 (311)
T 2ziu_A 19 DIVLCVDLCETTGGSSVRKQELVKELQ---RNSVTFDVRKLNVGDFLWVARERVTPVPGQ--LRPPVGKELVLDYIIERK 93 (311)
T ss_dssp EEEEEECGGGSCC-----CCHHHHHHH---TTTCCEECCCCSSCSEEEEEEECCCCCTTC--SSCCCCCEEEEEEEEEEE
T ss_pred EEEEEEECccccCCccchHHHHHHHHH---HCCCCeEEEecCccCEEEEEecCCCccccc--cccccCceeeeeeEeEec
Confidence 345555555543321 2233334443 368999999999999986543311111111 1222222 3788899
Q ss_pred CHHHHHHHHhhH
Q 026347 105 TIDELIENLGKW 116 (240)
Q Consensus 105 s~~~Li~~l~~~ 116 (240)
+.++|+.++.+.
T Consensus 94 ~~~Dl~~Si~dg 105 (311)
T 2ziu_A 94 RMDDLCGSIIDG 105 (311)
T ss_dssp EHHHHHHHHHHT
T ss_pred cHHHHHHHHhcc
Confidence 999999887653
No 117
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=22.17 E-value=39 Score=21.03 Aligned_cols=16 Identities=19% Similarity=0.165 Sum_probs=11.8
Q ss_pred CCCccccccccceeec
Q 026347 222 TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 222 ~~CpiCR~~i~~~~~~ 237 (240)
..||+|..+-..+..+
T Consensus 37 w~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 37 WVCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCCTTTCCCGGGEEEC
T ss_pred CcCCCCCCCHHHceec
Confidence 3799999887766553
No 118
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.09 E-value=36 Score=20.91 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=10.1
Q ss_pred CCccccccccceee
Q 026347 223 NCPLCRRRIDQVVR 236 (240)
Q Consensus 223 ~CpiCR~~i~~~~~ 236 (240)
.||+|..+-..+.+
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 69999887666544
No 119
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.92 E-value=28 Score=23.80 Aligned_cols=44 Identities=23% Similarity=0.481 Sum_probs=24.5
Q ss_pred ccccceecccccc---ceEEc--cCCCcccccchhhc--------C----CCCccccccccc
Q 026347 189 MPDLCVICLEQEY---NAVFV--PCGHMCCCIICSWH--------L----TNCPLCRRRIDQ 233 (240)
Q Consensus 189 ~~~~C~iC~~~~~---~~~~~--pCgH~~~C~~C~~~--------~----~~CpiCR~~i~~ 233 (240)
....|.+|..... +.+++ -|...| -..|... . +.|+.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~y-H~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLY-HQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEE-ETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeE-cCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4558999987643 33332 344333 3344321 2 589999865544
No 120
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.88 E-value=39 Score=20.78 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=11.2
Q ss_pred CCCccccccccceee
Q 026347 222 TNCPLCRRRIDQVVR 236 (240)
Q Consensus 222 ~~CpiCR~~i~~~~~ 236 (240)
..||+|..+-..+..
T Consensus 36 w~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 36 WVCPLCGAPKSEFER 50 (52)
T ss_dssp CBCTTTCCBGGGEEE
T ss_pred CcCCCCCCCHHHcEE
Confidence 379999988776654
No 121
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=21.67 E-value=34 Score=17.67 Aligned_cols=10 Identities=50% Similarity=1.079 Sum_probs=8.5
Q ss_pred CeEEeCCCCC
Q 026347 88 TVRIQRPHKG 97 (240)
Q Consensus 88 ~~~iq~P~~g 97 (240)
+++|+.|.+|
T Consensus 2 ~irirdpnqg 11 (27)
T 4f02_C 2 TIRIRDPNQG 11 (27)
T ss_pred cceecCcccc
Confidence 5889999987
No 122
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=21.45 E-value=50 Score=24.85 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=26.9
Q ss_pred cccceeccccccceEEccCCCcccccchhhc---------------CCCCccccc
Q 026347 190 PDLCVICLEQEYNAVFVPCGHMCCCIICSWH---------------LTNCPLCRR 229 (240)
Q Consensus 190 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~---------------~~~CpiCR~ 229 (240)
++.|.+|-+.-.-..--.|-..| |..|... -+.||.|+.
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~F-h~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEE-EHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCee-eHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45899999766533333666777 8888761 157999984
No 123
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.74 E-value=30 Score=26.62 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=13.2
Q ss_pred ccchhhcC--CCCccccccccc
Q 026347 214 CIICSWHL--TNCPLCRRRIDQ 233 (240)
Q Consensus 214 C~~C~~~~--~~CpiCR~~i~~ 233 (240)
|..|+.+. ++|..|..+|..
T Consensus 110 C~~~y~~~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 110 CKDDFFKRFGTKCAACQLGIPP 131 (182)
T ss_dssp CHHHHHHTTSCCCTTTCCCCCS
T ss_pred ecCccccccccccccCCCccCC
Confidence 44444443 579999988864
No 124
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.49 E-value=41 Score=22.80 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=12.5
Q ss_pred CCCccccccccceeec
Q 026347 222 TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 222 ~~CpiCR~~i~~~~~~ 237 (240)
+.||+|..+-..+.++
T Consensus 61 W~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 61 WSCPDCGAAKSDFEMV 76 (81)
T ss_dssp CCCTTTCCCGGGEEEE
T ss_pred CcCCCCCCCHHHcEEc
Confidence 3799999987777654
No 125
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.38 E-value=1.1e+02 Score=21.01 Aligned_cols=10 Identities=30% Similarity=0.724 Sum_probs=7.4
Q ss_pred CCCccccccc
Q 026347 222 TNCPLCRRRI 231 (240)
Q Consensus 222 ~~CpiCR~~i 231 (240)
+.||.|+..-
T Consensus 77 W~Cp~C~~~~ 86 (91)
T 1weu_A 77 WFCPRCSQES 86 (91)
T ss_dssp CCCTTTCCCC
T ss_pred EECcCccCcC
Confidence 4799997643
No 126
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.27 E-value=43 Score=21.95 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=12.1
Q ss_pred CCCccccccccceeec
Q 026347 222 TNCPLCRRRIDQVVRT 237 (240)
Q Consensus 222 ~~CpiCR~~i~~~~~~ 237 (240)
+.||+|..+-..+.++
T Consensus 41 w~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 41 FMCPACRSPKNQFKSI 56 (70)
T ss_dssp CBCTTTCCBGGGEEEC
T ss_pred CcCCCCCCCHHHceEc
Confidence 3799999887776554
No 127
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.09 E-value=36 Score=25.81 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=26.9
Q ss_pred cceeccccccceEEccCCCcccccchhhcC--CCCccccccccc
Q 026347 192 LCVICLEQEYNAVFVPCGHMCCCIICSWHL--TNCPLCRRRIDQ 233 (240)
Q Consensus 192 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--~~CpiCR~~i~~ 233 (240)
.|..|........+.-=|..+ |..|+... +.|..|..+|..
T Consensus 35 ~C~~C~~~L~~~~f~~~g~~y-C~~~y~~~f~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 35 KCSDCHVPLAERCFSRGESVY-CKDDFFKRFGTKCAACQLGIPP 77 (169)
T ss_dssp BCTTTCCBCCSCCEESSSCEE-CHHHHHHHHSCBCTTTCCBCCT
T ss_pred ccCCCCCcCCCCCcccCCeee-ecccccccccccccccccccCC
Confidence 566665544433344445666 88888765 689999888864
Done!