Query 026349
Match_columns 240
No_of_seqs 135 out of 837
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xtc_A F-box-like/WD repeat-co 95.5 0.014 4.7E-07 41.5 3.9 34 35-68 2-35 (90)
2 1uuj_A Platelet-activating fac 95.2 0.019 6.6E-07 40.5 4.0 33 38-70 10-42 (88)
3 1vyh_C Platelet-activating fac 86.6 0.13 4.5E-06 45.2 0.0 54 38-97 8-61 (410)
4 2nxp_A Transcription initiatio 85.4 1 3.5E-05 35.0 4.6 66 94-162 34-99 (156)
5 2d68_A FOP, FGFR1OP; alpha hel 81.8 1.6 5.5E-05 30.2 3.9 31 39-69 19-49 (82)
6 2j4b_A TAF5, transcription ini 74.1 5.2 0.00018 30.3 5.1 62 95-160 16-77 (138)
7 2j49_A Transcription initiatio 66.3 3.7 0.00013 31.6 2.8 50 95-145 18-67 (148)
8 2xz2_A CSTF-50, isoform B; RNA 60.4 10 0.00035 25.0 3.6 33 37-69 15-47 (66)
9 2xpi_A Anaphase-promoting comp 51.8 1.1E+02 0.0038 26.9 10.5 62 80-141 155-227 (597)
10 3dwc_A TCMCP-1, metallocarboxy 46.1 1.2E+02 0.0043 27.7 9.8 97 4-101 314-465 (505)
11 1ka2_A M32 carboxypeptidase; h 43.6 1.6E+02 0.0053 27.0 10.0 51 4-55 315-374 (499)
12 3q15_A PSP28, response regulat 42.8 59 0.002 27.2 6.9 29 36-64 7-37 (378)
13 3mkr_A Coatomer subunit epsilo 39.3 1.5E+02 0.0052 24.0 10.5 91 38-141 64-157 (291)
14 3u4t_A TPR repeat-containing p 35.8 1.5E+02 0.005 22.7 9.5 101 36-141 1-101 (272)
15 2y4t_A DNAJ homolog subfamily 35.0 2E+02 0.0068 24.0 13.5 59 82-141 264-322 (450)
16 3hoa_A Thermostable carboxypep 34.7 1.9E+02 0.0064 26.6 9.1 98 3-101 321-470 (509)
17 2v5f_A Prolyl 4-hydroxylase su 34.5 1E+02 0.0036 20.7 6.7 58 84-141 14-73 (104)
18 3u3w_A Transcriptional activat 31.5 2E+02 0.0067 22.9 8.8 87 55-142 46-143 (293)
19 2dna_A Unnamed protein product 30.7 22 0.00075 23.4 1.6 16 88-103 45-60 (67)
20 3ieg_A DNAJ homolog subfamily 29.7 2.1E+02 0.0071 22.6 13.1 14 86-99 199-212 (359)
21 2eap_A Lymphocyte cytosolic pr 29.5 38 0.0013 23.6 2.7 24 44-68 26-49 (90)
22 2cp9_A EF-TS, EF-TSMT, elongat 28.5 30 0.001 22.5 1.9 15 87-101 34-48 (64)
23 2xcb_A PCRH, regulatory protei 26.8 1.6E+02 0.0055 20.4 9.3 88 46-141 25-113 (142)
24 1whc_A RSGI RUH-027, UBA/UBX 3 26.4 72 0.0025 20.4 3.6 17 88-104 35-51 (64)
25 3vtx_A MAMA; tetratricopeptide 25.7 1.9E+02 0.0064 20.7 11.0 15 126-140 119-133 (184)
26 2y4t_A DNAJ homolog subfamily 25.6 2.9E+02 0.0099 22.9 10.4 113 22-142 10-122 (450)
27 2ho1_A Type 4 fimbrial biogene 25.5 2.2E+02 0.0074 21.5 13.0 54 85-141 115-168 (252)
28 2knz_A Ubiquilin-4; cytoplasm, 25.5 73 0.0025 19.5 3.3 16 87-102 36-51 (53)
29 2dba_A Smooth muscle cell asso 25.4 1.6E+02 0.0054 19.8 11.3 99 39-142 29-127 (148)
30 3dwl_G Actin-related protein 2 25.0 33 0.0011 26.3 1.9 26 79-104 40-65 (152)
31 1k8k_G P16, ARP2/3 complex 16 24.7 68 0.0023 24.6 3.6 26 79-104 39-64 (151)
32 3t5x_A PCI domain-containing p 23.1 90 0.0031 24.7 4.3 73 27-109 37-113 (203)
33 2xpi_A Anaphase-promoting comp 22.7 3.8E+02 0.013 23.3 12.9 95 38-140 407-501 (597)
34 3sxm_A Transcriptional regulat 22.4 1E+02 0.0035 21.8 4.2 29 74-102 98-126 (140)
35 3mkq_A Coatomer beta'-subunit; 21.4 3.3E+02 0.011 24.9 8.6 51 38-102 629-679 (814)
36 2bwb_A Ubiquitin-like protein 21.2 99 0.0034 18.3 3.2 13 87-99 32-44 (46)
37 3ulq_A Response regulator aspa 21.0 2.6E+02 0.0088 23.0 7.1 61 85-145 113-174 (383)
No 1
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.47 E-value=0.014 Score=41.51 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCC
Q 026349 35 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 68 (240)
Q Consensus 35 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~ 68 (240)
+++.+++|.||..||...||..||-+|.+|+++.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 5789999999999999999999999999999875
No 2
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.22 E-value=0.019 Score=40.53 Aligned_cols=33 Identities=21% Similarity=0.582 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCC
Q 026349 38 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPD 70 (240)
Q Consensus 38 ~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~ 70 (240)
+++|++-|++||..+||.+++.+|.+|.++...
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999999988653
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=86.58 E-value=0.13 Score=45.24 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026349 38 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK 97 (240)
Q Consensus 38 ~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~ 97 (240)
+++++++|++||..+||.+++.+|.+|.+++.... .......+.+++|+..+..
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~w~~~~~l 61 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE------LDKKYAGLLEKKWTSVIRL 61 (410)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcc------hhhhhhchhhhhhhheeeH
Confidence 57899999999999999999999999998754221 1223445667777766654
No 4
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=85.37 E-value=1 Score=34.96 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=46.1
Q ss_pred HHHHHHhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhhhh
Q 026349 94 AIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALL 162 (240)
Q Consensus 94 Ai~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~lL 162 (240)
-..|++..-......-+.+.|=+-++-|++||.+|...+|-.|..++-.-+...+ .++++++.++.
T Consensus 34 L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~---~~~i~~L~~i~ 99 (156)
T 2nxp_A 34 LKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLT 99 (156)
T ss_dssp HHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCC
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHH---HHHHHHHhcCC
Confidence 3567765432222223678999999999999999999999999998766664333 45666554433
No 5
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=81.78 E-value=1.6 Score=30.21 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhhCCCC
Q 026349 39 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 69 (240)
Q Consensus 39 ~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~ 69 (240)
..++.||.+||...||.=|...|..|+|.+.
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~ 49 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQ 49 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence 4588999999999999999999999999963
No 6
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=74.13 E-value=5.2 Score=30.27 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=41.9
Q ss_pred HHHHHhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcCcccCCchHHHHHHHHHhh
Q 026349 95 IEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 160 (240)
Q Consensus 95 i~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~~~~~~~~~~l~~~~~ 160 (240)
..|++..-..-...-+.+.|=+-++-|++||.+|...+|-+|..++-..+... .++++.+.+
T Consensus 16 ~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~----~~~i~~L~~ 77 (138)
T 2j4b_A 16 KTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK----SEEIKQFES 77 (138)
T ss_dssp HHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C----HHHHHHHTT
T ss_pred HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH----HHHHHHHhc
Confidence 56776542222222367899999999999999999999999999876555422 345554433
No 7
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=66.32 E-value=3.7 Score=31.56 Aligned_cols=50 Identities=8% Similarity=-0.058 Sum_probs=35.9
Q ss_pred HHHHHhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcCccc
Q 026349 95 IEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRG 145 (240)
Q Consensus 95 i~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~ 145 (240)
..|++..-......-+.+.|=+-++-|++||.+| ..+|-.|..++-..+.
T Consensus 18 r~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~ 67 (148)
T 2j49_A 18 KNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK 67 (148)
T ss_dssp HHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH
T ss_pred HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH
Confidence 5666654211112225689999999999999999 9999999987655443
No 8
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=60.43 E-value=10 Score=24.96 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCC
Q 026349 37 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 69 (240)
Q Consensus 37 ~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~ 69 (240)
+|+.|=|||..-|...||...|..|.+..+..+
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 467789999999999999999999999988664
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=51.81 E-value=1.1e+02 Score=26.92 Aligned_cols=62 Identities=19% Similarity=0.081 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhChhhhh-----------ccccchhhhHHHHHHHHHhcCChHHHHHHHHHhc
Q 026349 80 MAVKKAVQCGNVEDAIEKVNDLNPEILD-----------TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141 (240)
Q Consensus 80 ~~I~~~I~~G~i~~Ai~~i~~~~p~l~~-----------~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l 141 (240)
..+.-....|++++|++.+++..|.-.. .........+...-.-+.+.|+..+|+++.++-+
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455567889999999998865443200 0001112222222233556899999999888754
No 10
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi}
Probab=46.09 E-value=1.2e+02 Score=27.73 Aligned_cols=97 Identities=15% Similarity=0.267 Sum_probs=60.6
Q ss_pred HHHHH-HHHHHHHhhhccCCCHHHHHHHHhcCCCCHHHHH--------HHHHHHHHHhCHHH----------HH-HHHHH
Q 026349 4 FWIVI-RQLAEIEAMSKKVITREEWEKKLNDVKIRKEDMN--------KLVMNFLVTEGYVD----------AA-EKFRM 63 (240)
Q Consensus 4 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~LI~~yL~~~Gy~~----------ta-~~f~~ 63 (240)
||-++ -.+.+.+. ..+.++.+++.+.++.+.++--++. .+|+-|=+..++.+ += +...+
T Consensus 314 F~~~~~p~l~~~f~-~~~~~s~e~~y~~~n~V~pslIRveADEvTY~lHIilRyEiEk~Li~G~l~v~DLP~~Wn~km~e 392 (505)
T 3dwc_A 314 FMEFLAPRLVEYFG-DQPAFTSSNMKRVIQRVSPGLIRIDADELCYPLHVMLRYEIERDLMDGNIEAEEVPRVWNEKMKS 392 (505)
T ss_dssp HHHHHHHHHHHHHC-CCTTCSHHHHHHHHTCCCCCSCGGGCCTTTHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCCCCHHHHHHHhcccCCCceeeehhhhhhhhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHH
Confidence 77654 45677776 3478999999999998876632222 67777766665441 11 22333
Q ss_pred hhCCCCC-CCH-------------------------------HhHHHHH-H--HHHHHhcCCHHHHHHHHHhh
Q 026349 64 ESGTEPD-IDL-------------------------------ATITDRM-A--VKKAVQCGNVEDAIEKVNDL 101 (240)
Q Consensus 64 e~~i~~~-~~~-------------------------------~~~~~r~-~--I~~~I~~G~i~~Ai~~i~~~ 101 (240)
-.|+.+. .|. ..+..-. . +...|.+||+.+...|+++|
T Consensus 393 yLGi~p~~nd~~G~LQDiHWs~G~fGYFPsY~LG~~yAAQl~~a~~~~~pd~~~~~~i~~Gdf~~i~~WL~e~ 465 (505)
T 3dwc_A 393 YLGLETLGNDKEGCLQDVHWSGGMFGYFPTYSLGAMVAAQLMSCVRRELGEEVVDDCIRKGDLGKILAKQNEK 465 (505)
T ss_dssp HHSCCCTTCCTTTTTSCSTTTTTCCSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hcCCCCCCCCCCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHCCCccHHHHHHcCChHHHHHHHHHH
Confidence 3577654 210 1111111 4 77788889999999998876
No 11
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A
Probab=43.56 E-value=1.6e+02 Score=27.01 Aligned_cols=51 Identities=20% Similarity=0.043 Sum_probs=35.1
Q ss_pred HHHHH-HHHHHHHhhhccCCCHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHhCHH
Q 026349 4 FWIVI-RQLAEIEAMSKKVITREEWEKKLNDVKIRK--------EDMNKLVMNFLVTEGYV 55 (240)
Q Consensus 4 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~LI~~yL~~~Gy~ 55 (240)
||-++ .++.+.+. .-+.++.+.+...++.+..+- .-.-.+++-|.+.....
T Consensus 315 F~~~~~p~l~~~f~-~l~~~~~e~~~~~~n~V~pslIRveADEltY~lHIilRyeiEk~Li 374 (499)
T 1ka2_A 315 FVELIYPVLKENLP-FMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFHILLRFKLERLMV 374 (499)
T ss_dssp HHHHHHHHHHHHCG-GGGGCCHHHHHHHHTCCCCCSCGGGCCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-ccCCCCHHHHHHHhCccCccceeeeccccchhHHHHHHHHHHHHHH
Confidence 66655 55667665 344589999999999887654 44456777777766554
No 12
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=42.75 E-value=59 Score=27.21 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHH--HHhCHHHHHHHHHHh
Q 026349 36 IRKEDMNKLVMNFL--VTEGYVDAAEKFRME 64 (240)
Q Consensus 36 ~~~~~l~~LI~~yL--~~~Gy~~ta~~f~~e 64 (240)
+....+..++-+|- ++.+-.+.|..+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~ 37 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAE 37 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 34445555555554 444545555444443
No 13
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=39.27 E-value=1.5e+02 Score=23.96 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhCHHH-HHHHHHHhh--CCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchh
Q 026349 38 KEDMNKLVMNFLVTEGYVD-AAEKFRMES--GTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFF 114 (240)
Q Consensus 38 ~~~l~~LI~~yL~~~Gy~~-ta~~f~~e~--~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F 114 (240)
.-....++++|+...|-.+ +...|.+-. +..|. +.+.. ...=.-....|++++|++++++ | ....
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-~~~~~--~~la~~~~~~g~~~~Al~~l~~--~------~~~~- 131 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-NTTFL--LMAASIYFYDQNPDAALRTLHQ--G------DSLE- 131 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS-CHHHH--HHHHHHHHHTTCHHHHHHHHTT--C------CSHH-
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC-CHHHH--HHHHHHHHHCCCHHHHHHHHhC--C------CCHH-
Confidence 3345567778888887444 444454422 22232 11111 1111224577888888888876 2 1111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhc
Q 026349 115 HLQQQRLIELIRNGKVEEALEFAQEEL 141 (240)
Q Consensus 115 ~L~~q~fIEli~~~~~~~Ai~y~r~~l 141 (240)
.+...-.-+.+.|+.++|+...++-+
T Consensus 132 -~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 132 -CMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11111222456678888888777643
No 14
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=35.82 E-value=1.5e+02 Score=22.74 Aligned_cols=101 Identities=9% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchhh
Q 026349 36 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFH 115 (240)
Q Consensus 36 ~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~ 115 (240)
++.+.+...-.-|+....|.++...|.+-....+....-.+..-. -....|+++.|++.+++.-. ...++.....
T Consensus 1 ~n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~---~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~ 75 (272)
T 3u4t_A 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAV---CYYELAKYDLAQKDIETYFS--KVNATKAKSA 75 (272)
T ss_dssp ----CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHH---HHHHTTCHHHHHHHHHHHHT--TSCTTTCCHH
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH---HHHHHhhHHHHHHHHHHHHh--ccCchhHHHH
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhc
Q 026349 116 LQQQRLIELIRNGKVEEALEFAQEEL 141 (240)
Q Consensus 116 L~~q~fIEli~~~~~~~Ai~y~r~~l 141 (240)
.+...-.-+...|+..+|+.+.++-+
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~ 101 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAV 101 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=35.04 E-value=2e+02 Score=24.02 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=31.7
Q ss_pred HHHHHhcCCHHHHHHHHHhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhc
Q 026349 82 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141 (240)
Q Consensus 82 I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l 141 (240)
..-....|++++|+.++++.-. +...++.....++...-.-+.+.|+..+|+.+.++-+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMK-TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3446677888888888765421 1111111112222222233456677888888777644
No 16
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase; 2.10A {Thermus thermophilus HB27} SCOP: d.92.1.0 PDB: 1wgz_A
Probab=34.71 E-value=1.9e+02 Score=26.55 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=56.2
Q ss_pred hHHHHHH-HHHHHHhhhccCCCHHHHHHHHhcCCCCHHHH--------HHHHHHHHHHhCHH----------HHHHH-HH
Q 026349 3 LFWIVIR-QLAEIEAMSKKVITREEWEKKLNDVKIRKEDM--------NKLVMNFLVTEGYV----------DAAEK-FR 62 (240)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~LI~~yL~~~Gy~----------~ta~~-f~ 62 (240)
-||-++- .+.+.+.. ...++.+++.+.++.+.++--++ -.+|+-|=+..++. ++=.. ..
T Consensus 321 ~F~~~~~p~l~~~f~~-~~~~s~e~~y~~~N~V~pslIRveADElTY~lHIilRyEiEk~Li~G~l~v~DLP~~Wn~km~ 399 (509)
T 3hoa_A 321 GFWERFFPRAREVFAS-LGDVSLEDFHFAVNAVEPSLIRVEADEVTYNLHILVRLELELALFRGELSPEDLPEAWAEKYR 399 (509)
T ss_dssp HHHHHHHHHHHHHCGG-GTTCCHHHHHHHTTCCCCCSCGGGCCTTTHHHHHHHHHHHHHHHHTTSCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-cCCCCHHHHHHHHhhcCCCcceeehhhhhhhhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH
Confidence 3676543 45666655 46699999999988776542212 15666665554433 22222 23
Q ss_pred HhhCCCCCCCH-------------------------------HhHHH-HHHHHHHHhcCCHHHHHHHHHhh
Q 026349 63 MESGTEPDIDL-------------------------------ATITD-RMAVKKAVQCGNVEDAIEKVNDL 101 (240)
Q Consensus 63 ~e~~i~~~~~~-------------------------------~~~~~-r~~I~~~I~~G~i~~Ai~~i~~~ 101 (240)
+-.|+.+..|. ..+.. .-.+...|.+||+.+...|++++
T Consensus 400 eyLGi~p~~d~~G~LQDiHWs~G~fGYFPsY~LG~~yAAQl~~a~~~~~pd~~~~i~~Gd~~~i~~WL~e~ 470 (509)
T 3hoa_A 400 DHLGVAPKDYKDGVMQDVHWAGGLFGYFPTYTLGNLYAAQFFQKAEAELGPLEPRFARGEFQPFLDWTRAR 470 (509)
T ss_dssp HHHSCCCSSSTTTTTSCSTTTTTCCSCTHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HhcCCCCCCCCCCccccccccCCCcccchhHHHHHHHHHHHHHHHHHhccCHHHHHHcCChHHHHHHHHHH
Confidence 33577654320 11111 11466778888888888888776
No 17
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=34.46 E-value=1e+02 Score=20.66 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=34.8
Q ss_pred HHHhcCCHHHHHHHHHhhChhhhhcc--ccchhhhHHHHHHHHHhcCChHHHHHHHHHhc
Q 026349 84 KAVQCGNVEDAIEKVNDLNPEILDTN--PQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141 (240)
Q Consensus 84 ~~I~~G~i~~Ai~~i~~~~p~l~~~~--s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l 141 (240)
.+...|++..|+.|.+.--....... ..-.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 46678999999999986432221111 01112222222233457899999999988754
No 18
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=31.48 E-value=2e+02 Score=22.90 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhCCCC--------CCCHHhHH-HHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchhhhHHHHHHH--
Q 026349 55 VDAAEKFRMESGTEP--------DIDLATIT-DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE-- 123 (240)
Q Consensus 55 ~~ta~~f~~e~~i~~--------~~~~~~~~-~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~L~~q~fIE-- 123 (240)
.++...+++..|+++ ..+.+... ....+...+..|+++.|+..+++.-.. ....+.....+.....+-
T Consensus 46 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~ 124 (293)
T 3u3w_A 46 MDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAY 124 (293)
T ss_dssp HHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHH
Confidence 355555666666542 11223232 234577788899999999888753211 011111111011111111
Q ss_pred HHhcCChHHHHHHHHHhcC
Q 026349 124 LIRNGKVEEALEFAQEELA 142 (240)
Q Consensus 124 li~~~~~~~Ai~y~r~~l~ 142 (240)
....++..+|+.+.++-+.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHH
Confidence 2345678888888888765
No 19
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.71 E-value=22 Score=23.41 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHhhCh
Q 026349 88 CGNVEDAIEKVNDLNP 103 (240)
Q Consensus 88 ~G~i~~Ai~~i~~~~p 103 (240)
.||++.|++|+-.+.+
T Consensus 45 ~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 45 DGDTNAAIYKLKSSQG 60 (67)
T ss_dssp TSCHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHhCCC
Confidence 6899999999987754
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=29.66 E-value=2.1e+02 Score=22.62 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=7.1
Q ss_pred HhcCCHHHHHHHHH
Q 026349 86 VQCGNVEDAIEKVN 99 (240)
Q Consensus 86 I~~G~i~~Ai~~i~ 99 (240)
...|+++.|+.+++
T Consensus 199 ~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 199 YQLGDHELSLSEVR 212 (359)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455555555544
No 21
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.47 E-value=38 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHhCHHHHHHHHHHhhCCC
Q 026349 44 LVMNFLVTEGYVDAAEKFRMESGTE 68 (240)
Q Consensus 44 LI~~yL~~~Gy~~ta~~f~~e~~i~ 68 (240)
=|++||-+.||.+ ++.|++...+.
T Consensus 26 ~VadWLkk~g~~~-cd~lv~Kh~ID 49 (90)
T 2eap_A 26 SLADYFKKLNYKD-CEKAVKKYHID 49 (90)
T ss_dssp THHHHHHHTTCHH-HHHHHHHTTCC
T ss_pred HHHHHHHHcCCch-HHHHHHHhccC
Confidence 5899999999999 89998776553
No 22
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=28.46 E-value=30 Score=22.53 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=12.7
Q ss_pred hcCCHHHHHHHHHhh
Q 026349 87 QCGNVEDAIEKVNDL 101 (240)
Q Consensus 87 ~~G~i~~Ai~~i~~~ 101 (240)
.+||++.|+.|+.+.
T Consensus 34 ~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 34 CGGDLKQAEIWLHKE 48 (64)
T ss_dssp HTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 379999999999764
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=26.79 E-value=1.6e+02 Score=20.41 Aligned_cols=88 Identities=15% Similarity=0.002 Sum_probs=46.6
Q ss_pred HHHHHHhC-HHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchhhhHHHHHHHH
Q 026349 46 MNFLVTEG-YVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL 124 (240)
Q Consensus 46 ~~yL~~~G-y~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~L~~q~fIEl 124 (240)
...+...| |.++...|.+-....|. +......+ =.-....|++++|+.++++-- .+...++...+.+ =.-+
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l--g~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l----g~~~ 96 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGL--GACRQSLGLYEQALQSYSYGA-LMDINEPRFPFHA----AECH 96 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH--HHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHH----HHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHH--HHHHHHHhhHHHHHHHHHHHH-hcCCCCcHHHHHH----HHHH
Confidence 34444555 55555666655555442 22222211 222457899999999887531 1111122222221 1224
Q ss_pred HhcCChHHHHHHHHHhc
Q 026349 125 IRNGKVEEALEFAQEEL 141 (240)
Q Consensus 125 i~~~~~~~Ai~y~r~~l 141 (240)
...|+..+|+.+.++-+
T Consensus 97 ~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 56789999999888753
No 24
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.43 E-value=72 Score=20.41 Aligned_cols=17 Identities=12% Similarity=0.226 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHhhChh
Q 026349 88 CGNVEDAIEKVNDLNPE 104 (240)
Q Consensus 88 ~G~i~~Ai~~i~~~~p~ 104 (240)
+|+++.|++|+-.+.+.
T Consensus 35 ~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 35 NQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp SCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhCCCC
Confidence 47899999999887543
No 25
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=25.67 E-value=1.9e+02 Score=20.74 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=7.9
Q ss_pred hcCChHHHHHHHHHh
Q 026349 126 RNGKVEEALEFAQEE 140 (240)
Q Consensus 126 ~~~~~~~Ai~y~r~~ 140 (240)
+.|+..+|+++.++-
T Consensus 119 ~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKT 133 (184)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHH
Confidence 345555555555543
No 26
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=25.58 E-value=2.9e+02 Score=22.94 Aligned_cols=113 Identities=17% Similarity=0.136 Sum_probs=57.3
Q ss_pred CCHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 026349 22 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDL 101 (240)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~ 101 (240)
.....|.+.+..-+.+...+..+...|+....|.++...|.+-....+. +... ......-....|++++|+..+++.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~--~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIA--YYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHH--HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445566665554444455556666666555566666777665544332 2222 233344567889999999998753
Q ss_pred ChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhcC
Q 026349 102 NPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 142 (240)
Q Consensus 102 ~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~ 142 (240)
- +.++.. ...+...-.-+.+.|+..+|+.+.++-+.
T Consensus 87 l----~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 87 I----QLKMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp H----HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H----hcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 222211 11222222224567899999999987654
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=25.55 E-value=2.2e+02 Score=21.45 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHhhChhhhhccccchhhhHHHHHHHHHhcCChHHHHHHHHHhc
Q 026349 85 AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 141 (240)
Q Consensus 85 ~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~L~~q~fIEli~~~~~~~Ai~y~r~~l 141 (240)
....|++++|++++++... ....+. ........-.-+...|+..+|+.+.++-+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ--DTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT--CTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHh--CccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777777777765432 001111 11111111122345677777777776644
No 28
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=25.53 E-value=73 Score=19.48 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.8
Q ss_pred hcCCHHHHHHHHHhhC
Q 026349 87 QCGNVEDAIEKVNDLN 102 (240)
Q Consensus 87 ~~G~i~~Ai~~i~~~~ 102 (240)
..||++.|++|+-.+.
T Consensus 36 t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 36 TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HTSCHHHHHHHHHHCC
T ss_pred hCCCHHHHHHHHHHcC
Confidence 4689999999987653
No 29
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.36 E-value=1.6e+02 Score=19.85 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchhhhHH
Q 026349 39 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 118 (240)
Q Consensus 39 ~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~L~~ 118 (240)
..+..+...|+...-|.++...|.+-..+.+............-.-....|+++.|+.++++.- +.++.- ...+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~----~~~~~~-~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI----EKDGGD-VKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHTSCC-HHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH----hhCccC-HHHHH
Confidence 3444455555555556677777777666655321111112222333667899999999987542 111111 11122
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcC
Q 026349 119 QRLIELIRNGKVEEALEFAQEELA 142 (240)
Q Consensus 119 q~fIEli~~~~~~~Ai~y~r~~l~ 142 (240)
..-.-+...|+..+|+.+.++-+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222224457899999999987653
No 30
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=24.98 E-value=33 Score=26.33 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhChh
Q 026349 79 RMAVKKAVQCGNVEDAIEKVNDLNPE 104 (240)
Q Consensus 79 r~~I~~~I~~G~i~~Ai~~i~~~~p~ 104 (240)
-.+|++++..||..+|+..+-++-|-
T Consensus 40 ~~qvr~lL~~g~~~~ALk~aL~~pP~ 65 (152)
T 3dwl_G 40 IPQARSAIQTGNALQGLKTLLSYVPY 65 (152)
T ss_dssp HHHHHHHHHHSCCHHHHHHHTSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 37899999999999999999888664
No 31
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=24.71 E-value=68 Score=24.55 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhChh
Q 026349 79 RMAVKKAVQCGNVEDAIEKVNDLNPE 104 (240)
Q Consensus 79 r~~I~~~I~~G~i~~Ai~~i~~~~p~ 104 (240)
-.+|+++|..|+..+|+..+-++-|-
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~pP~ 64 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKNPPI 64 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSSCCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 57899999999999999999887664
No 32
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=23.07 E-value=90 Score=24.66 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=45.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHH----HHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 026349 27 WEKKLNDVKIRKEDMNKLVMNFL----VTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 102 (240)
Q Consensus 27 ~~~~~~~~~~~~~~l~~LI~~yL----~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~ 102 (240)
...++.+.+.+...-.+.|+-|| +-.|...+...|.+ .+.. .-..+.++++.||+..--++++++.
T Consensus 37 L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~-~~~~---------~y~~L~~Avr~Gdl~~f~~~l~~~~ 106 (203)
T 3t5x_A 37 LSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKK-YHLM---------QFAEVTRAVSEGNLLLLHEALAKHE 106 (203)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHH-TTCG---------GGHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhh-Cchh---------HHHHHHHHHHhCCHHHHHHHHHHhH
Confidence 34455555555445556778888 44555444444432 2221 1346889999999999999998876
Q ss_pred hhhhhcc
Q 026349 103 PEILDTN 109 (240)
Q Consensus 103 p~l~~~~ 109 (240)
..+.+.+
T Consensus 107 ~~f~~~~ 113 (203)
T 3t5x_A 107 AFFIRCG 113 (203)
T ss_dssp HHHHHHT
T ss_pred HHHHHCC
Confidence 6555543
No 33
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=22.74 E-value=3.8e+02 Score=23.30 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhccccchhhhH
Q 026349 38 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ 117 (240)
Q Consensus 38 ~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~p~l~~~~s~l~F~L~ 117 (240)
....+.++.-|....-+.++...|.+-....+.. ... ......-....|++++|++.+++... +...+. ..+
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~----~~~ 478 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-HLP--YLFLGMQHMQLGNILLANEYLQSSYA-LFQYDP----LLL 478 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-SHH--HHHHHHHHHHHTCHHHHHHHHHHHHH-HCCCCH----HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHH--HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCh----HHH
Confidence 3444555555544444555555565544443321 111 12223345567777777777765311 111111 112
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh
Q 026349 118 QQRLIELIRNGKVEEALEFAQEE 140 (240)
Q Consensus 118 ~q~fIEli~~~~~~~Ai~y~r~~ 140 (240)
..--.-+.+.|+.++|+++.++-
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 22222234567777777766654
No 34
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=22.45 E-value=1e+02 Score=21.83 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 026349 74 ATITDRMAVKKAVQCGNVEDAIEKVNDLN 102 (240)
Q Consensus 74 ~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~ 102 (240)
..+..=..|.++|.+||.+.|.+.+..|-
T Consensus 98 ~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl 126 (140)
T 3sxm_A 98 VSNREHKELIERIISGDKEGAIEKLKEHL 126 (140)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566778888888888888888887764
No 35
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=21.36 E-value=3.3e+02 Score=24.91 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 026349 38 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 102 (240)
Q Consensus 38 ~~~l~~LI~~yL~~~Gy~~ta~~f~~e~~i~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~i~~~~ 102 (240)
...+ .-++.||...|+.+.|..+.++ ...++..++..|+++.|.+.++...
T Consensus 629 ~~~~-~~~~~~l~~~~~~~~a~~~~~~-------------~~~~f~~~l~~~~~~~A~~~~~~~~ 679 (814)
T 3mkq_A 629 KDSL-TKIARFLEGQEYYEEALNISPD-------------QDQKFELALKVGQLTLARDLLTDES 679 (814)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHCCC-------------HHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hHHH-HHHHHHHHhCCChHHheecCCC-------------cchheehhhhcCCHHHHHHHHHhhC
Confidence 4444 6777899999999988877632 2344667899999999999987653
No 36
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=21.22 E-value=99 Score=18.33 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.7
Q ss_pred hcCCHHHHHHHHH
Q 026349 87 QCGNVEDAIEKVN 99 (240)
Q Consensus 87 ~~G~i~~Ai~~i~ 99 (240)
..||++.|++|+-
T Consensus 32 ~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 32 SGGSVQGALDSLL 44 (46)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 4789999999974
No 37
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=21.00 E-value=2.6e+02 Score=23.04 Aligned_cols=61 Identities=5% Similarity=-0.014 Sum_probs=31.4
Q ss_pred HHhcCCHHHHHHHHHhhChhhhhccccc-hhhhHHHHHHHHHhcCChHHHHHHHHHhcCccc
Q 026349 85 AVQCGNVEDAIEKVNDLNPEILDTNPQL-FFHLQQQRLIELIRNGKVEEALEFAQEELAPRG 145 (240)
Q Consensus 85 ~I~~G~i~~Ai~~i~~~~p~l~~~~s~l-~F~L~~q~fIEli~~~~~~~Ai~y~r~~l~p~~ 145 (240)
....|+++.|+.++++--......+... .-..+..-=.-....|+..+|+++.++-+.-+.
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3456777777777765432222222111 122222222223456777777777777666553
Done!