Query 026351
Match_columns 240
No_of_seqs 111 out of 1053
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02433 Nodulin-21_like_2 Nodu 100.0 3.7E-63 8.1E-68 432.8 24.7 220 21-240 15-234 (234)
2 cd02435 CCC1 CCC1. CCC1: This 100.0 4.8E-62 1E-66 427.5 24.8 234 5-239 1-241 (241)
3 cd02432 Nodulin-21_like_1 Nodu 100.0 1.6E-61 3.5E-66 418.6 24.5 215 22-239 4-218 (218)
4 cd02434 Nodulin-21_like_3 Nodu 100.0 2.3E-61 5E-66 419.8 24.3 216 24-239 1-224 (225)
5 PF01988 VIT1: VIT family; In 100.0 1E-59 2.2E-64 406.4 23.5 213 25-238 1-213 (213)
6 KOG4473 Uncharacterized membra 100.0 3.9E-54 8.5E-59 363.6 18.1 236 3-240 12-247 (247)
7 cd02431 Ferritin_CCC1_C CCC1-r 100.0 8.8E-42 1.9E-46 279.4 15.9 149 26-239 1-149 (149)
8 cd02437 CCC1_like_1 CCC1-relat 100.0 1.8E-40 4E-45 278.6 17.9 174 24-239 1-175 (175)
9 TIGR00267 conserved hypothetic 100.0 2.9E-40 6.2E-45 276.0 14.1 168 27-237 1-168 (169)
10 cd02436 Nodulin-21 Nodulin-21. 100.0 4E-38 8.6E-43 254.8 15.1 151 24-213 1-151 (152)
11 cd01059 CCC1_like CCC1-related 100.0 1.4E-34 3E-39 235.6 14.5 142 26-239 1-143 (143)
12 COG1814 Uncharacterized membra 100.0 3.1E-30 6.7E-35 225.1 20.2 218 20-240 6-226 (229)
13 PF08006 DUF1700: Protein of u 97.4 0.011 2.3E-07 49.7 14.6 139 93-239 9-164 (181)
14 COG4709 Predicted membrane pro 96.8 0.084 1.8E-06 44.9 14.4 108 93-205 9-123 (195)
15 COG1814 Uncharacterized membra 95.6 0.08 1.7E-06 46.3 8.6 82 157-239 147-229 (229)
16 cd02437 CCC1_like_1 CCC1-relat 91.7 2.1 4.5E-05 35.8 9.8 79 153-233 94-173 (175)
17 PF06738 DUF1212: Protein of u 91.3 7.2 0.00016 32.5 12.8 45 106-167 70-114 (193)
18 PF06570 DUF1129: Protein of u 91.2 8.8 0.00019 32.8 15.0 41 127-167 48-89 (206)
19 COG4709 Predicted membrane pro 82.1 31 0.00068 29.5 12.1 44 168-211 93-136 (195)
20 PF09925 DUF2157: Predicted me 81.5 26 0.00056 28.1 13.0 18 117-134 9-26 (145)
21 PRK01844 hypothetical protein; 80.4 3 6.6E-05 30.1 3.9 31 93-123 28-58 (72)
22 PF10507 DUF2453: Protein of u 79.2 14 0.00031 28.9 7.6 42 30-78 9-59 (111)
23 TIGR02359 thiW thiW protein. L 79.1 18 0.00039 30.0 8.7 72 155-238 46-117 (160)
24 COG2966 Uncharacterized conser 77.1 53 0.0012 29.2 13.0 100 106-230 92-191 (250)
25 PRK11677 hypothetical protein; 76.1 12 0.00026 30.2 6.7 74 59-141 4-77 (134)
26 PF07499 RuvA_C: RuvA, C-termi 70.4 13 0.00027 24.2 4.6 39 106-144 3-41 (47)
27 COG3763 Uncharacterized protei 70.3 7.7 0.00017 27.9 3.7 31 93-123 28-58 (71)
28 PRK10404 hypothetical protein; 70.2 27 0.00058 26.8 7.1 20 153-172 77-97 (101)
29 PRK00523 hypothetical protein; 68.9 8.9 0.00019 27.7 3.8 31 93-123 29-59 (72)
30 TIGR02185 Trep_Strep conserved 68.6 72 0.0016 27.0 10.9 31 153-183 103-133 (189)
31 cd02434 Nodulin-21_like_3 Nodu 67.3 85 0.0018 27.3 10.9 82 152-233 133-222 (225)
32 PF06055 ExoD: Exopolysacchari 67.3 56 0.0012 27.7 9.1 62 112-178 81-142 (187)
33 PF03672 UPF0154: Uncharacteri 67.2 5.3 0.00011 28.2 2.3 31 93-123 21-51 (64)
34 PF05957 DUF883: Bacterial pro 67.1 32 0.00069 25.4 6.9 21 153-173 70-91 (94)
35 PRK10132 hypothetical protein; 61.1 55 0.0012 25.4 7.3 21 153-173 83-104 (108)
36 PF11151 DUF2929: Protein of u 61.0 39 0.00085 23.1 5.8 44 190-233 5-50 (57)
37 cd02433 Nodulin-21_like_2 Nodu 59.9 1.2E+02 0.0025 26.7 10.0 84 152-236 149-234 (234)
38 TIGR00341 conserved hypothetic 58.0 1.4E+02 0.003 27.7 10.6 55 184-238 135-191 (325)
39 PF03035 RNA_capsid: Calicivir 57.8 23 0.00051 30.9 5.1 18 110-127 72-89 (226)
40 KOG0569 Permease of the major 55.6 2.1E+02 0.0046 28.0 12.6 25 154-178 268-292 (485)
41 PF03779 SPW: SPW repeat; Int 54.6 62 0.0013 21.6 5.7 44 164-207 3-46 (51)
42 PF11239 DUF3040: Protein of u 53.0 85 0.0018 22.7 8.1 11 129-139 17-27 (82)
43 PF10078 DUF2316: Uncharacteri 52.4 38 0.00082 25.5 4.9 45 106-158 12-56 (89)
44 COG0342 SecD Preprotein transl 52.2 1.7E+02 0.0038 28.7 10.7 49 156-204 436-485 (506)
45 PF15188 CCDC-167: Coiled-coil 51.7 71 0.0015 23.8 6.2 20 79-98 2-21 (85)
46 PRK07668 hypothetical protein; 50.9 1.8E+02 0.004 25.9 14.8 66 99-169 20-86 (254)
47 PF11712 Vma12: Endoplasmic re 50.1 77 0.0017 25.4 6.8 17 192-208 85-101 (142)
48 COG4575 ElaB Uncharacterized c 49.9 52 0.0011 25.5 5.4 21 153-173 80-101 (104)
49 PF03594 BenE: Benzoate membra 49.7 2E+02 0.0044 27.3 10.3 70 151-222 279-350 (378)
50 PF11588 DUF3243: Protein of u 49.2 14 0.0003 27.3 2.1 40 72-113 36-75 (81)
51 PF08006 DUF1700: Protein of u 48.7 1.5E+02 0.0033 24.4 13.1 22 110-131 44-65 (181)
52 PF14015 DUF4231: Protein of u 48.7 1.1E+02 0.0024 22.8 7.2 21 161-181 23-43 (112)
53 PF05055 DUF677: Protein of un 47.9 1.4E+02 0.003 27.9 8.9 34 108-141 278-311 (336)
54 PRK00117 recX recombination re 45.1 43 0.00093 27.0 4.6 29 104-132 127-155 (157)
55 PF01988 VIT1: VIT family; In 45.0 2E+02 0.0042 24.6 10.2 14 102-115 95-108 (213)
56 COG3105 Uncharacterized protei 44.6 1.7E+02 0.0036 23.7 8.2 46 92-144 40-85 (138)
57 PRK09573 (S)-2,3-di-O-geranylg 44.5 2.2E+02 0.0049 25.1 9.8 25 214-238 253-277 (279)
58 PF10777 YlaC: Inner membrane 44.2 1.3E+02 0.0027 24.9 7.1 27 153-180 33-59 (155)
59 PF01024 Colicin: Colicin pore 42.6 58 0.0013 27.8 5.1 41 186-235 135-175 (187)
60 COG0728 MviN Uncharacterized m 42.5 3.5E+02 0.0076 26.8 13.1 127 108-237 337-470 (518)
61 PF07297 DPM2: Dolichol phosph 42.5 1.3E+02 0.0029 22.0 6.5 52 157-210 11-70 (78)
62 PRK14137 recX recombination re 42.2 81 0.0018 26.9 6.0 34 101-134 52-85 (195)
63 COG3093 VapI Plasmid maintenan 41.7 45 0.00097 25.8 3.9 42 106-147 37-79 (104)
64 PRK11032 hypothetical protein; 41.4 2.1E+02 0.0045 23.8 8.1 57 85-141 6-66 (160)
65 PF12670 DUF3792: Protein of u 40.7 1.7E+02 0.0036 22.6 10.4 49 185-233 37-86 (116)
66 PRK10884 SH3 domain-containing 40.7 97 0.0021 26.7 6.3 16 159-174 177-192 (206)
67 PF11373 DUF3175: Protein of u 40.5 33 0.00071 25.5 2.9 39 118-168 20-58 (86)
68 PF06305 DUF1049: Protein of u 40.2 47 0.001 22.7 3.6 6 76-81 42-47 (68)
69 PF11691 DUF3288: Protein of u 40.0 1.1E+02 0.0025 23.0 5.7 51 84-134 24-76 (90)
70 PF03547 Mem_trans: Membrane t 39.9 1.7E+02 0.0036 26.7 8.3 81 154-236 243-331 (385)
71 PF11629 Mst1_SARAH: C termina 39.4 29 0.00062 23.2 2.2 28 89-116 11-38 (49)
72 COG4129 Predicted membrane pro 39.3 3.2E+02 0.0069 25.4 10.2 44 153-196 50-93 (332)
73 PRK10847 hypothetical protein; 38.8 1.1E+02 0.0024 26.2 6.5 22 57-78 75-96 (219)
74 PRK14136 recX recombination re 38.5 37 0.00081 31.2 3.6 42 101-142 174-219 (309)
75 PRK00145 putative inner membra 38.2 49 0.0011 28.7 4.2 24 97-120 73-96 (223)
76 PF05628 Borrelia_P13: Borreli 37.6 55 0.0012 26.5 4.0 47 192-238 43-92 (135)
77 PF13829 DUF4191: Domain of un 36.7 1.2E+02 0.0026 26.6 6.3 19 185-203 53-72 (224)
78 PRK00117 recX recombination re 36.7 43 0.00093 27.0 3.4 30 103-132 25-54 (157)
79 PF10136 SpecificRecomb: Site- 36.5 4.8E+02 0.01 26.6 11.8 71 168-239 540-610 (643)
80 PRK00888 ftsB cell division pr 36.3 1.9E+02 0.0042 22.0 7.2 19 134-152 63-81 (105)
81 COG3135 BenE Uncharacterized p 36.2 3.9E+02 0.0084 25.5 11.9 81 121-219 277-362 (402)
82 PF14972 Mito_morph_reg: Mitoc 36.1 96 0.0021 25.9 5.3 20 158-177 58-78 (165)
83 PF13767 DUF4168: Domain of un 36.0 57 0.0012 23.3 3.6 34 103-136 41-74 (78)
84 COG2056 Predicted permease [Ge 35.9 2.8E+02 0.0061 26.5 8.9 33 54-90 191-223 (444)
85 PF11990 DUF3487: Protein of u 35.9 1.2E+02 0.0025 24.0 5.6 16 196-211 63-78 (121)
86 TIGR03592 yidC_oxa1_cterm memb 35.6 58 0.0012 27.1 4.1 21 100-120 47-67 (181)
87 PF02532 PsbI: Photosystem II 35.4 37 0.00081 21.1 2.1 25 189-213 8-32 (36)
88 PF02631 RecX: RecX family; I 35.3 1E+02 0.0022 23.7 5.2 29 101-129 90-118 (121)
89 PHA00094 VI minor coat protein 35.0 1.4E+02 0.0031 23.3 5.7 34 200-233 20-53 (112)
90 PF06379 RhaT: L-rhamnose-prot 34.5 1.9E+02 0.0042 27.0 7.6 80 156-235 100-192 (344)
91 PF01062 Bestrophin: Bestrophi 34.1 3.2E+02 0.007 23.9 10.4 52 153-206 211-262 (293)
92 COG0466 Lon ATP-dependent Lon 33.7 78 0.0017 32.6 5.2 53 80-132 223-278 (782)
93 PRK10457 hypothetical protein; 33.3 1.9E+02 0.004 21.2 6.0 42 168-209 8-50 (82)
94 PF11241 DUF3043: Protein of u 32.6 3E+02 0.0065 23.1 9.3 38 154-191 67-105 (170)
95 PF14193 DUF4315: Domain of un 32.5 1.5E+02 0.0032 22.0 5.3 30 102-131 32-61 (83)
96 PF13373 DUF2407_C: DUF2407 C- 32.5 24 0.00052 28.7 1.2 45 161-205 90-138 (140)
97 PF06295 DUF1043: Protein of u 31.0 96 0.0021 24.5 4.5 23 93-115 32-54 (128)
98 PF12732 YtxH: YtxH-like prote 30.8 1.2E+02 0.0025 21.4 4.5 18 71-88 12-29 (74)
99 PF09586 YfhO: Bacterial membr 30.7 3.9E+02 0.0085 27.3 9.9 57 157-213 305-364 (843)
100 PF04156 IncA: IncA protein; 30.6 2.8E+02 0.006 22.8 7.5 9 26-34 9-17 (191)
101 cd00052 EH Eps15 homology doma 30.4 1.1E+02 0.0023 20.0 4.1 29 106-134 18-46 (67)
102 COG2055 Malate/L-lactate dehyd 30.3 61 0.0013 30.3 3.6 33 101-133 7-39 (349)
103 PF09335 SNARE_assoc: SNARE as 30.2 2.3E+02 0.005 21.0 9.0 25 55-79 18-42 (123)
104 PF02096 60KD_IMP: 60Kd inner 29.8 82 0.0018 26.3 4.1 21 100-120 48-68 (198)
105 TIGR00763 lon ATP-dependent pr 29.4 1E+02 0.0023 31.7 5.5 38 95-132 236-275 (775)
106 PF06968 BATS: Biotin and Thia 28.6 17 0.00038 27.0 -0.2 24 63-86 56-79 (93)
107 PF05461 ApoL: Apolipoprotein 28.0 3.8E+02 0.0083 24.6 8.4 15 168-182 107-121 (313)
108 PF03839 Sec62: Translocation 27.9 1.7E+02 0.0037 25.7 5.8 26 157-182 112-137 (224)
109 PRK12585 putative monovalent c 27.4 3.7E+02 0.008 23.2 7.5 22 216-237 69-90 (197)
110 TIGR03082 Gneg_AbrB_dup membra 27.1 3.4E+02 0.0073 21.9 8.5 69 153-221 44-112 (156)
111 PRK14137 recX recombination re 26.8 1.3E+02 0.0027 25.8 4.7 31 104-134 153-183 (195)
112 COG1424 BioW Pimeloyl-CoA synt 26.7 78 0.0017 27.5 3.4 32 101-132 72-103 (239)
113 COG2733 Predicted membrane pro 26.7 2.2E+02 0.0047 27.3 6.6 31 192-222 13-43 (415)
114 TIGR02230 ATPase_gene1 F0F1-AT 26.4 3E+02 0.0065 21.1 7.4 7 200-206 60-66 (100)
115 PF14490 HHH_4: Helix-hairpin- 26.3 65 0.0014 23.8 2.6 26 106-131 8-33 (94)
116 COG3086 RseC Positive regulato 26.3 3.7E+02 0.008 22.1 7.1 36 144-182 65-102 (150)
117 PRK14136 recX recombination re 25.9 1.3E+02 0.0027 27.8 4.8 27 104-130 276-302 (309)
118 PF04391 DUF533: Protein of un 25.9 2.4E+02 0.0051 24.0 6.2 31 102-132 97-127 (188)
119 PF10883 DUF2681: Protein of u 25.9 2.8E+02 0.0062 20.7 6.2 14 121-134 69-82 (87)
120 COG3678 CpxP P pilus assembly/ 25.8 2E+02 0.0043 23.8 5.6 53 82-134 61-113 (160)
121 PF02615 Ldh_2: Malate/L-lacta 25.6 74 0.0016 29.5 3.3 31 103-133 6-36 (335)
122 TIGR00997 ispZ intracellular s 25.6 3.3E+02 0.0071 23.0 7.0 10 172-181 7-16 (178)
123 PF14362 DUF4407: Domain of un 25.6 4.8E+02 0.01 23.2 11.0 53 185-237 46-99 (301)
124 PRK12884 ubiA prenyltransferas 25.5 4.6E+02 0.0099 22.9 9.8 26 213-238 253-278 (279)
125 PRK13421 F0F1 ATP synthase sub 25.5 4.4E+02 0.0095 22.9 8.0 34 153-188 76-109 (223)
126 PF05915 DUF872: Eukaryotic pr 25.4 1.5E+02 0.0033 23.1 4.6 57 153-209 37-96 (115)
127 PF14476 Chloroplast_duf: Peta 25.4 5.3E+02 0.012 23.6 10.5 102 21-131 21-124 (313)
128 PF09388 SpoOE-like: Spo0E lik 25.3 1.1E+02 0.0023 19.6 3.1 27 104-130 8-34 (45)
129 PF00627 UBA: UBA/TS-N domain; 25.3 84 0.0018 18.9 2.6 21 109-129 5-25 (37)
130 COG5336 Uncharacterized protei 25.0 3.3E+02 0.0072 21.4 6.2 14 202-215 62-75 (116)
131 PRK14135 recX recombination re 24.7 1.9E+02 0.0042 25.2 5.8 26 107-132 75-100 (263)
132 PF13962 PGG: Domain of unknow 24.5 2.5E+02 0.0053 21.3 5.6 52 185-238 60-111 (113)
133 COG2137 OraA Uncharacterized p 24.4 92 0.002 26.2 3.4 32 103-134 34-65 (174)
134 COG3376 HoxN High-affinity nic 24.4 5.7E+02 0.012 23.7 10.5 37 200-238 253-289 (342)
135 PRK14134 recX recombination re 24.2 2.1E+02 0.0045 25.8 5.9 28 106-133 78-105 (283)
136 PF04695 Pex14_N: Peroxisomal 24.1 1.6E+02 0.0035 23.4 4.6 34 98-134 18-51 (136)
137 PRK11469 hypothetical protein; 24.0 4.4E+02 0.0095 22.2 7.8 44 158-212 117-160 (188)
138 TIGR01541 tape_meas_lam_C phag 24.0 1.2E+02 0.0026 28.2 4.3 43 89-131 82-125 (332)
139 PF04391 DUF533: Protein of un 23.9 2.7E+02 0.0059 23.7 6.2 69 89-162 99-170 (188)
140 TIGR01594 holin_lambda phage h 23.9 3.4E+02 0.0074 20.9 6.8 33 200-232 31-63 (107)
141 MTH00174 ATP6 ATP synthase F0 23.6 4.4E+02 0.0096 23.4 7.8 33 153-187 89-121 (252)
142 COG0356 AtpB F0F1-type ATP syn 23.3 3.9E+02 0.0085 23.7 7.3 54 138-194 73-128 (246)
143 PF02355 SecD_SecF: Protein ex 23.1 4.4E+02 0.0095 22.1 7.4 26 157-182 128-153 (189)
144 TIGR03546 conserved hypothetic 23.0 4.3E+02 0.0093 21.7 7.5 17 222-238 114-130 (154)
145 PRK14134 recX recombination re 22.9 1.8E+02 0.004 26.1 5.3 30 104-133 253-282 (283)
146 PF11181 YflT: Heat induced st 22.9 1E+02 0.0022 23.2 3.1 27 107-133 71-97 (103)
147 TIGR00601 rad23 UV excision re 22.7 1.3E+02 0.0028 28.4 4.4 44 103-149 153-196 (378)
148 PRK14135 recX recombination re 22.7 2.5E+02 0.0054 24.5 6.1 30 101-130 230-259 (263)
149 PRK12489 anaerobic C4-dicarbox 22.7 7E+02 0.015 24.1 11.2 31 194-224 279-309 (443)
150 PRK12727 flagellar biosynthesi 22.7 3E+02 0.0066 27.5 7.0 29 105-133 293-321 (559)
151 PF06081 DUF939: Bacterial pro 22.4 3.3E+02 0.0071 21.6 6.2 33 153-185 44-76 (141)
152 PRK05415 hypothetical protein; 22.4 6.5E+02 0.014 23.5 14.6 18 101-118 146-163 (341)
153 KOG4544 Uncharacterized conser 22.3 3.6E+02 0.0079 21.9 6.2 12 170-181 78-89 (144)
154 PRK15050 2-aminoethylphosphona 22.2 4E+02 0.0088 23.5 7.4 22 156-177 24-45 (296)
155 PF03030 H_PPase: Inorganic H+ 22.1 5.2E+02 0.011 26.6 8.6 69 153-221 288-364 (682)
156 PF15461 BCD: Beta-carotene 15 22.0 5.5E+02 0.012 22.6 9.3 18 165-182 88-105 (259)
157 COG1605 PheA Chorismate mutase 22.0 3.3E+02 0.0071 20.4 5.8 34 100-133 51-87 (101)
158 PF10112 Halogen_Hydrol: 5-bro 21.9 2.1E+02 0.0047 23.9 5.3 36 163-201 11-46 (199)
159 PF03154 Atrophin-1: Atrophin- 21.8 63 0.0014 34.1 2.2 36 75-116 710-745 (982)
160 PRK15025 ureidoglycolate dehyd 21.7 1.1E+02 0.0023 28.6 3.6 31 103-133 6-36 (349)
161 TIGR03499 FlhF flagellar biosy 21.3 5E+02 0.011 23.0 7.8 31 102-132 132-162 (282)
162 TIGR01299 synapt_SV2 synaptic 21.2 9E+02 0.019 24.9 10.4 18 198-215 218-235 (742)
163 PF04977 DivIC: Septum formati 21.2 1.4E+02 0.003 20.6 3.4 23 129-152 49-71 (80)
164 PRK13260 2,3-diketo-L-gulonate 21.1 1.1E+02 0.0025 28.2 3.6 31 103-133 6-36 (332)
165 PRK13420 F0F1 ATP synthase sub 21.1 5.6E+02 0.012 22.3 8.3 38 153-192 73-110 (226)
166 TIGR03175 AllD ureidoglycolate 21.0 1.1E+02 0.0025 28.5 3.6 31 103-133 6-36 (349)
167 smart00165 UBA Ubiquitin assoc 20.9 1.6E+02 0.0034 17.4 3.2 23 109-131 4-26 (37)
168 PF06472 ABC_membrane_2: ABC t 20.8 5.9E+02 0.013 22.5 9.7 16 25-40 142-157 (281)
169 PF07130 YebG: YebG protein; 20.6 2E+02 0.0043 21.0 4.0 34 107-140 36-71 (75)
170 PF04956 TrbC: TrbC/VIRB2 fami 20.3 3.5E+02 0.0076 19.7 7.0 41 194-236 57-97 (99)
171 PF14163 SieB: Superinfection 20.2 3.7E+02 0.0081 21.4 6.2 58 55-116 37-94 (151)
172 PRK11128 putative 3-phenylprop 20.2 6.3E+02 0.014 22.6 8.9 26 157-182 8-33 (382)
173 PRK12882 ubiA prenyltransferas 20.1 6E+02 0.013 22.3 9.3 21 216-236 255-275 (276)
174 COG2979 Uncharacterized protei 20.0 1.6E+02 0.0035 25.7 4.1 38 102-139 128-167 (225)
No 1
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=3.7e-63 Score=432.79 Aligned_cols=220 Identities=29% Similarity=0.450 Sum_probs=214.4
Q ss_pred ccchhHHHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhc
Q 026351 21 TAGEIVRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIIT 100 (240)
Q Consensus 21 ~~~~~lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~ 100 (240)
...+|+||+|||+||||+++|++|+|++|++.++..|+++|+++++||++||++|+|+|+|+|+|.+++|++||+|++++
T Consensus 15 ~~~~~lr~~VlG~nDGlvt~falvaG~aga~~~~~~Vl~~Gla~liAga~SMa~GeYls~kse~d~~~~~~~re~~~i~~ 94 (234)
T cd02433 15 RMSGNLRAAVFGANDGLVSNLALVMGVAGAGVSNQTILLTGLAGLLAGALSMAAGEYVSVTSQRELLEASIPDERRELRK 94 (234)
T ss_pred hhhhHHHHHHHhccchHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhc
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMF 180 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~ 180 (240)
+|++|++||.++|+++|+++++|+.+++++++||+.|+++||++|+|+++++..|||++|+++|+||++|+++|++||+|
T Consensus 95 ~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~~~~~~~P~~aAl~sflsF~ig~liPLLPf~~ 174 (234)
T cd02433 95 HPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTLAREELGLDPELLGNPWSAAVSSFLLFALGALIPVLPFLF 174 (234)
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhhC
Q 026351 181 IPRATDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKAVA 240 (240)
Q Consensus 181 ~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 240 (240)
.++...++..|+++++++|+++|++++++++++|||+++||+++|+++++++|++|++|+
T Consensus 175 ~~~~~~~~~~s~~~~~~~L~~lG~~~a~~s~~~~~~~~l~~~~~G~~aa~vsy~iG~l~~ 234 (234)
T cd02433 175 GMSGLAALVLSVLLVGLALLATGAVTGLLSGRSPGISALRQLAIGGGAAAVTYLLGLLFG 234 (234)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 776667999999999999999999999999999999999999999999999999999874
No 2
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=100.00 E-value=4.8e-62 Score=427.47 Aligned_cols=234 Identities=54% Similarity=0.874 Sum_probs=222.6
Q ss_pred chhhhhhcccccccccccchhHHHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeeehH
Q 026351 5 EPEKQTLLNQHREKHFTAGEIVRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEA 84 (240)
Q Consensus 5 ~~~~~~~~~~~~e~~~~~~~~lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~ 84 (240)
+++.+..+..|.|+|....+|+||+|||+||||+++|++++|+++++ +++.|+++|+++++||++|||+|+|+|+|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~lr~~VlG~nDGlvs~~alvaGvag~~-~~~~vll~Gla~liAgA~SMa~GeYlS~~sq~ 79 (241)
T cd02435 1 DPSSQHSTSSHSEKHFTSPRIVRDIIIGLSDGLTVPFALTAGLSSLG-DTKLVITGGLAELAAGAISMGLGGYLAAKSER 79 (241)
T ss_pred CccccCCCCCCccccccccchHHHHHhhcchhhHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 35666777888999999999999999999999999999999999877 59999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHH-HHHHHHhCCCChhcHHHHHH-HHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHH
Q 026351 85 DHYARELKREQEEIITVPDTEAAE-VAGILADYGIEPHEYGPVVN-ALRKKPQAWLEFMMKFELGLEKPDPRRALHSALT 162 (240)
Q Consensus 85 d~~~~e~~re~~ei~~~p~~e~~e-l~~~~~~~Gl~~~~a~~i~~-~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~ 162 (240)
|.++++++||+|+++++||.|++| +.++|+++|+++++++++++ .+.+||+.|+++||++|+|+++++..|||++|++
T Consensus 80 d~~~~~~~~e~~~i~~~~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~elg~~~~~~~~p~~aAl~ 159 (241)
T cd02435 80 DHYQREHKRKQEAVEASPSTEQEEIILYDLVQYGLVPLETAASTVTDLRKNPQALVDFLMRFGLGLEEPDTSRALISALT 159 (241)
T ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHHHhhCCCccccCCHHHHHHH
Confidence 999999999999999999999999 99999999999999999876 6889999999999999999999888999999999
Q ss_pred HHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-----HHHHHHHHHHHHHHHHHHHHHh
Q 026351 163 IAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAKGYFTGNKPV-----KSALQTAFIGAIASAAAFGMAK 237 (240)
Q Consensus 163 ~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~-----~~~l~~l~~G~~aa~~~y~iG~ 237 (240)
+|+||++|+++|++||+|.++...++.+|+++++++|+++|++++++++++++ |+++||+++|+++++++|++|+
T Consensus 160 s~lsf~lG~liPLlPy~~~~~~~~a~~~si~l~~~aL~ilG~~~s~~s~~~~~~~~~~~s~lrml~~G~~aa~vty~l~~ 239 (241)
T cd02435 160 IGLSYFIGGLIPLLPYFFVSTVGEALLLSVIVTLVALFVFGYVKTWFTGGWGGAGGGVWGAVQMLVVGGLAAGAAWGLVK 239 (241)
T ss_pred HHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887667899999999999999999999999998887 9999999999999999999999
Q ss_pred hh
Q 026351 238 AV 239 (240)
Q Consensus 238 l~ 239 (240)
+|
T Consensus 240 ~~ 241 (241)
T cd02435 240 LL 241 (241)
T ss_pred cC
Confidence 86
No 3
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=1.6e-61 Score=418.62 Aligned_cols=215 Identities=28% Similarity=0.471 Sum_probs=208.0
Q ss_pred cchhHHHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcC
Q 026351 22 AGEIVRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITV 101 (240)
Q Consensus 22 ~~~~lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~ 101 (240)
+.+|+||+|||+|||++++||+|+|+++++.|++.|+++|+++++||++||++|+|+|+|||+|.+++|++||+|+++++
T Consensus 4 ~~~~lr~~V~G~~DGlvs~~alvaG~aga~~~~~~Ill~Gla~l~Aga~SMa~G~yls~~sq~d~~~~~~~~e~~~i~~~ 83 (218)
T cd02432 4 RLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEYVSVSSQRDTEKADIAKERRELAED 83 (218)
T ss_pred hHhHHHHHHHhccchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhcc
Q 026351 102 PDTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMFI 181 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~~ 181 (240)
||+|++|+.++|+++|+++++++++++++.+|| ++++||++|+|+++++..|||++|+++|+||++|+++|++||+|.
T Consensus 84 p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~--~~~~~~~~e~g~~~~~~~~p~~aal~s~~sf~lg~liPllpy~~~ 161 (218)
T cd02432 84 PEAELEELADIYEERGLSPELARQVADELMAKD--ALEAHARDELGITEGEYANPWQAALASAISFSVGALLPLLAILLA 161 (218)
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987 699999999999998889999999999999999999999999988
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026351 182 PRATDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKAV 239 (240)
Q Consensus 182 ~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 239 (240)
+. ..++..|++++.++|+++|++++|++++++||+++||+++|++++++||++|++|
T Consensus 162 ~~-~~~~~~s~~~~~~aL~~~G~~~a~~~~~~~~~~~l~~~~iG~~aa~vty~iG~l~ 218 (218)
T cd02432 162 PA-AWKVPVTIIATLLALALTGYVSARLGGASVLRAILRNVIWGALAMALTYLIGRLF 218 (218)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 74 4578999999999999999999999999999999999999999999999999875
No 4
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=2.3e-61 Score=419.76 Aligned_cols=216 Identities=28% Similarity=0.439 Sum_probs=208.6
Q ss_pred hhHHHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCch
Q 026351 24 EIVRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVPD 103 (240)
Q Consensus 24 ~~lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p~ 103 (240)
+|+|++|||+|||+++++|+|+|+++++.++..|+++|+++++|+++||++|+|+|+|+|+|.+++|++||+|+++++||
T Consensus 1 ~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~ili~Gla~liAga~SMa~GeYls~kse~d~~~~e~~re~~~i~~~pe 80 (225)
T cd02434 1 EYLKSIVFGGLDGIVTIFAIVAGVVGAGLSPFVILIIGFANLLADGISMAAGEYVSTKAERDFLHSEKKREEWEIENYPE 80 (225)
T ss_pred CcHHHHhhcchhhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHhHhhhHhhhccc
Q 026351 104 TEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPD-PRRALHSALTIAIAYVLGGMVPLIPYMFIP 182 (240)
Q Consensus 104 ~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~-~~~P~~~al~~~~sf~lg~liPllP~~~~~ 182 (240)
.|++||.++|+++|+++++|+++++++.+||+.|+++||++|+|+.+++ ..|||++|+++|+||++|+++||+||++.+
T Consensus 81 ~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~~elg~~~~~~~~~P~~aAl~sflsf~~ggliPLlp~~~~~ 160 (225)
T cd02434 81 GEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMTEELGLIPDDELPSPLKTALVTFLSFLVFGIIPLLPYLLGL 160 (225)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHHhhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999998877 589999999999999999999999999876
Q ss_pred c------hhHHHHHHHHH-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026351 183 R------ATDAVLASVAV-TLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKAV 239 (240)
Q Consensus 183 ~------~~~a~~~s~~~-~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 239 (240)
+ ...++.+|+++ +.++|+++|++++++++++|+|+++||+++|+++++++|++|++|
T Consensus 161 ~~~~~~~~~~~~~~s~~~~~~~~L~~~G~~~~~~~~~~~~~~~l~~~~~G~~aa~~ty~iG~l~ 224 (225)
T cd02434 161 YYYSQKEIDSVFALSILIFVAFTLFLLGSFKSKLYNGKWIISGIIMLINGAASGGVSFFLGVLF 224 (225)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 25678889998 999999999999999999999999999999999999999999986
No 5
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=100.00 E-value=1e-59 Score=406.39 Aligned_cols=213 Identities=39% Similarity=0.682 Sum_probs=207.9
Q ss_pred hHHHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCchH
Q 026351 25 IVRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVPDT 104 (240)
Q Consensus 25 ~lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p~~ 104 (240)
|+||+|||+|||+++++++++|+++++.++..|+++|+++++|+++||++|+|+|+|+|+|++++|++||+||++++||+
T Consensus 1 ~~r~~V~G~~DGlv~~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SMa~G~yls~~se~~~~~~e~~re~~e~~~~pe~ 80 (213)
T PF01988_consen 1 WLRDAVFGANDGLVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISMAVGEYLSVKSERDLYEAEREREEWELENNPEE 80 (213)
T ss_pred ChHHHHhhccchHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHhChHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhcccch
Q 026351 105 EAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMFIPRA 184 (240)
Q Consensus 105 e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~~~~~ 184 (240)
|++||.++|+++|+++++++++++++++||+. +++||++|+|+++++..+||++|+++|++|++|+++|++||++.++.
T Consensus 81 e~~el~~iy~~~Gl~~~~a~~i~~~l~~~~~~-~~~m~~ee~g~~~~~~~~p~~~al~~~~sf~lg~liPllp~~~~~~~ 159 (213)
T PF01988_consen 81 EKEELVEIYRAKGLSEEDAEEIAEELSKDKDA-LDFMMREELGLSPEEEESPWKAALATFLSFILGGLIPLLPYFFLPSV 159 (213)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCchH-HHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999 99999999999998899999999999999999999999999998722
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 026351 185 TDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKA 238 (240)
Q Consensus 185 ~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l 238 (240)
..++.+|+++++++|+++|+++++++++++||+++||+++|+++++++|++|+|
T Consensus 160 ~~a~~~s~~~~~~~L~~~G~~~a~~~~~~~~~~~l~~~~~G~~aa~~~~~iG~L 213 (213)
T PF01988_consen 160 SEAFIASIAVTILALFILGYFKARISGQSWWRSGLEMLLIGLIAAAVTYLIGYL 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 479999999999999999999999999999999999999999999999999986
No 6
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=3.9e-54 Score=363.63 Aligned_cols=236 Identities=33% Similarity=0.543 Sum_probs=221.8
Q ss_pred CCchhhhhhcccccccccccchhHHHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeee
Q 026351 3 NIEPEKQTLLNQHREKHFTAGEIVRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKS 82 (240)
Q Consensus 3 ~~~~~~~~~~~~~~e~~~~~~~~lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~s 82 (240)
|++++.+...++++.+|..+.+|+|+.|+|.||||++++++.+|++++.+|.+.++++|+|+++||||||++|+|+|++|
T Consensus 12 ~~n~d~e~~~ek~~~~~~~~~~wlra~vlGanDGL~s~~sL~~Gv~a~~advki~l~~GfAglvaGA~SMaiGeyvsv~S 91 (247)
T KOG4473|consen 12 NRNGDMEKDQEKKTFDYFKRAQWLRAAVLGANDGLVSPASLMMGVGAAKADVKIMLLTGFAGLVAGACSMAIGEYVSVKS 91 (247)
T ss_pred ccCcccccchhhhhhhhHHHHHHHHHHHhccccCcccHHHHHHhhhhccCCeeEeeehhHHHHHhhhHHHhhccceeecc
Confidence 45556555556677788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHH
Q 026351 83 EADHYARELKREQEEIITVPDTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALT 162 (240)
Q Consensus 83 e~d~~~~e~~re~~ei~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~ 162 (240)
|.|++.+|.++|++|+..+++.|..|+.++|...+.++ -..+++.+++.|+.|+|+|+|.|+|+++|.+.+|.++|++
T Consensus 92 q~D~e~ae~q~erre~~a~~~~e~~E~~~Il~g~~~~E--~lpvi~alq~~p~~~ldf~~R~elGl~~p~~~~p~qaA~a 169 (247)
T KOG4473|consen 92 QYDIEVAEVQMERREFYANSNLENDEIADILLGEEEKE--ELPVIKALQRTPELMLDFIIRYELGLDEPAENRPLQAAAA 169 (247)
T ss_pred hhhHHHHHHHHHHHHhhccchhhhHHHHHHhcCCCchh--ccchhHHhhhChHHHHHHHHHhhcccCCCCCCchHHHHHH
Confidence 99999999999999999999999999999999555544 4456999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhhC
Q 026351 163 IAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKAVA 240 (240)
Q Consensus 163 ~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 240 (240)
+.++|.+|+++||+||+|.++...++..+++++.++||.|||.++.+++.+..|+.+|++++|.+|+++||++++++.
T Consensus 170 sa~afslGg~vPLl~~~fi~~~~~~~v~~vv~~~~aL~~fG~~ga~lg~ak~vrs~~r~vv~G~lAmaatf~l~Klig 247 (247)
T KOG4473|consen 170 SALAFSLGGIVPLLPAAFVKDYKVRIVVSVVATTFALFMFGYVGAHLGKAKVVRSSVRVVVGGWLAMAATFGLTKLIG 247 (247)
T ss_pred HHHHHHhccHHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
No 7
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=100.00 E-value=8.8e-42 Score=279.42 Aligned_cols=149 Identities=30% Similarity=0.444 Sum_probs=142.1
Q ss_pred HHHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCchHH
Q 026351 26 VRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVPDTE 105 (240)
Q Consensus 26 lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p~~e 105 (240)
+||+|||+|||+++++++++|++++..++..|+++|+++++|+++||++|+|+|+|+|+|.+++
T Consensus 1 ~r~~V~G~~DGlvt~~~~v~G~aga~~~~~~i~~~Gl~~~iA~a~SMa~G~YlS~kse~d~~~~---------------- 64 (149)
T cd02431 1 VGDFVLGLNDALVEITGALAGLTGAINNTILVGLSGLIVGIAAALSMAIGAYLSTKSESGVKES---------------- 64 (149)
T ss_pred CchhhccccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHhc----------------
Confidence 5899999999999999999999999999999999999999999999999999999999876542
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhcccchh
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMFIPRAT 185 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~ 185 (240)
|||++|+++++||++|+++|++||++.++..
T Consensus 65 -------------------------------------------------~p~~~al~s~~sf~~g~~iPllp~~~~~~~~ 95 (149)
T cd02431 65 -------------------------------------------------NPVKSALYTGIAYIIGVVIPILPYLLLSSVY 95 (149)
T ss_pred -------------------------------------------------chHHHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 7999999999999999999999999988657
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026351 186 DAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKAV 239 (240)
Q Consensus 186 ~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 239 (240)
.++.+|+.++.++|+++|++++|+++++|||+++||+.+|.++++++|.+|+++
T Consensus 96 ~a~~~s~~~~~~~L~~~G~~~~~~s~~~~~~~~l~~~~~G~~aa~~t~~iG~l~ 149 (149)
T cd02431 96 LALALSVTLAVLAILIFNFYISVASGISFRKKFIEMAGLALGAAFISFLLGYLL 149 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999999999999999999999999999999975
No 8
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=100.00 E-value=1.8e-40 Score=278.56 Aligned_cols=174 Identities=25% Similarity=0.270 Sum_probs=156.1
Q ss_pred hhHHHHHhhccchhHHHHHHHHhhhccCC-chHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCc
Q 026351 24 EIVRDVIIGVSDGLTVPFALAAGLSGANA-TSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVP 102 (240)
Q Consensus 24 ~~lr~~V~G~~DGlv~~~glv~G~~~a~~-~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p 102 (240)
+++|++|||+|||+++++++++|+++++. +++.|+++|+++++|+++||++|+|+|+|+| +||+++.+++|
T Consensus 1 ~~~r~~V~G~~DGivs~~~~v~G~~~a~~~~~~~i~~~Gla~~iA~a~Sma~g~yvs~~~~--------~~~~~~~~~~~ 72 (175)
T cd02437 1 STIRYGIYGLIDGSLSTLGVVFGASLAFDLDPKIIIAAGLGGAFALGISNGLGAAVAEEGS--------LRGMLEEKEKI 72 (175)
T ss_pred CchHHHhhccccchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhCh
Confidence 36899999999999999999999999987 9999999999999999999999999998753 24444556677
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhccc
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMFIP 182 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~~~ 182 (240)
+.|.+++ +.|+++|++. ..+||+++++++++|++|+++|++||++.+
T Consensus 73 ~~~~~~~-----------------------------~~~~~~e~~~----~~~~~~~al~sgls~~~G~llPLlp~~~~~ 119 (175)
T cd02437 73 LLRLEQM-----------------------------LTSTREELAI----RKADLPSGLIQGISTTLGGLLPLLPFLPFD 119 (175)
T ss_pred hhhHHHH-----------------------------HHHHHHHhcc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7666654 5778888875 478999999999999999999999999876
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026351 183 RATDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKAV 239 (240)
Q Consensus 183 ~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 239 (240)
...++.+|+++++++|+++|++++|+++++++++++|++.+|+++++++|.+|++|
T Consensus 120 -~~~a~~~si~~~~~~L~~~G~~~~~~~~~~~~~~~~r~~~~g~la~~~t~~vg~l~ 175 (175)
T cd02437 120 -LWLAAGIAVAIVLAILFILGLVIGKISKINVAISFVWAVGMVITGISLVFSVGKLF 175 (175)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56799999999999999999999999999999999999999999999999999985
No 9
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=100.00 E-value=2.9e-40 Score=275.99 Aligned_cols=168 Identities=25% Similarity=0.434 Sum_probs=143.9
Q ss_pred HHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCchHHH
Q 026351 27 RDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVPDTEA 106 (240)
Q Consensus 27 r~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p~~e~ 106 (240)
||+|+|+|||+++++|++.|+++. .++.+|+++|+++++|+++||+.|+|+++|+|++ ||++|+|++|
T Consensus 1 R~~VlG~~DGils~~giv~G~~~~-~~~~~i~~~Gla~~vA~a~Sma~GeYv~e~ae~~-------~e~~ele~~~---- 68 (169)
T TIGR00267 1 RYVVRGTIDGTLSALGVVGGASGS-VDNYVIILAGLGGGVANGMSNAFGAFTAERAEEE-------REMRELEKSM---- 68 (169)
T ss_pred CceeeccchHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----
Confidence 899999999999999999997655 4777999999999999999999999997665544 5555554433
Q ss_pred HHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhcccchhH
Q 026351 107 AEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMFIPRATD 186 (240)
Q Consensus 107 ~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~~ 186 (240)
|+++|++++++ +.+ ..+.+||++|++++++|++|+++|++||++. +...
T Consensus 69 ------~~~~g~~~~~~------~~~------------------~~~~~p~~aAl~sgls~~~g~liPllp~~~~-~~~~ 117 (169)
T TIGR00267 69 ------LMDEGKLDDTI------IYK------------------QARRRVYMSGFIDGFSTFMGSFVPVLPFLVF-DRMT 117 (169)
T ss_pred ------HHhcCCCchhh------HHH------------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHc-chhH
Confidence 45578887642 111 1245899999999999999999999999984 4667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 026351 187 AVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAK 237 (240)
Q Consensus 187 a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~ 237 (240)
++.+|+++++++|+++|++++++++++++|+++||+++|.++++++|++|.
T Consensus 118 a~~~s~~~~~~~L~ilG~~~a~~s~~~~~~s~lr~~~~G~~aa~it~~iG~ 168 (169)
T TIGR00267 118 ATIVTVLLTLIALLVLGVYLGRISRENILISSLKMVVIGLLVAVVSLLIEG 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999984
No 10
>cd02436 Nodulin-21 Nodulin-21. Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.
Probab=100.00 E-value=4e-38 Score=254.79 Aligned_cols=151 Identities=18% Similarity=0.249 Sum_probs=138.8
Q ss_pred hhHHHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCch
Q 026351 24 EIVRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVPD 103 (240)
Q Consensus 24 ~~lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p~ 103 (240)
+|+|++|||+||||++++++++|+++++.++..|+++|+++++||++||++|||+|++||+|.++++++||++|+
T Consensus 1 ~~lra~VlGanDGivs~~alv~Gvaga~~~~~~illaGla~lvAga~SMa~GeYvSv~sq~d~e~a~i~~e~~el----- 75 (152)
T cd02436 1 QWLRAAVLGANDGLVSVASLMLGVGAVCADEHAMLLSGLAGLVAGACPMAIGEFVRVYRQYRRPRAARCLRGRNR----- 75 (152)
T ss_pred CcHHHHHhhcchhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHhhcchhhcccccchHHHHHHHHHHHh-----
Confidence 599999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhcccc
Q 026351 104 TEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMFIPR 183 (240)
Q Consensus 104 ~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~~~~ 183 (240)
++|+++++ |+|+++.+..|||++|++|+++|.+|+++|+++++|..+
T Consensus 76 -----------~rGl~~~l----------------------elgi~~~~~~~P~qAA~aSa~sF~~Ga~lPll~~~fl~p 122 (152)
T cd02436 76 -----------ARGPAPDS----------------------EPEGLRRQAPSPSSAATASALSFAAGALFPLLAAWFVAS 122 (152)
T ss_pred -----------hcCCChhh----------------------hcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67888764 689988889999999999999999999999999994443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 026351 184 ATDAVLASVAVTLVALLIFGYAKGYFTGNK 213 (240)
Q Consensus 184 ~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~ 213 (240)
..+. ...+++++++|+++|++.+|+++.+
T Consensus 123 ~~~~-~~~~~~~~~aL~~~G~~~A~~g~a~ 151 (152)
T cd02436 123 YASR-RVLPPQSSAPAAPPGRSPATVTASS 151 (152)
T ss_pred cchh-hHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 4456 8889999999999999999998754
No 11
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=100.00 E-value=1.4e-34 Score=235.61 Aligned_cols=142 Identities=35% Similarity=0.682 Sum_probs=135.8
Q ss_pred HHHHHhhccchhHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCchHH
Q 026351 26 VRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVPDTE 105 (240)
Q Consensus 26 lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p~~e 105 (240)
+|++|||+|||+++++++++|++++..+++.++++|+++++|+++||+.|+|+|+|+|+|
T Consensus 1 ~r~~v~G~~DGivs~~~~v~G~~~a~~~~~~il~~Gl~~~ia~a~Sma~g~yls~~~e~~-------------------- 60 (143)
T cd01059 1 LRAAVLGANDGLVSTFALVAGVAAAGDSTKAILLAGLAGLVAGAISMAAGEYVSVKSQRD-------------------- 60 (143)
T ss_pred CccceecccchhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------------------
Confidence 589999999999999999999999998999999999999999999999999999998865
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhcccchh
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMFIPRAT 185 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~ 185 (240)
++|+++++||++|+++|++||++.+...
T Consensus 61 ----------------------------------------------------~~al~~~~s~~~g~lipllp~~~~~~~~ 88 (143)
T cd01059 61 ----------------------------------------------------KAALASGLSFILGGLLPLLPYLLLPAGS 88 (143)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 7999999999999999999999987656
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026351 186 DAVLASVAV-TLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKAV 239 (240)
Q Consensus 186 ~a~~~s~~~-~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 239 (240)
.++..|+++ +.+.|+++|++++|+++++||++++||+.+|+++++++|.+|+++
T Consensus 89 ~a~~~si~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~~a~i~~~~g~l~ 143 (143)
T cd01059 89 LALAVSVALVVALALFLLGAFVAKLGGAKKIRAALRMVVLGLLAAALTYLLGRLF 143 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 799999999 999999999999999999999999999999999999999999975
No 12
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=99.97 E-value=3.1e-30 Score=225.09 Aligned_cols=218 Identities=27% Similarity=0.416 Sum_probs=194.4
Q ss_pred cccchhHHHHHhhccchhHHHHHHHHhhhccC-CchHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHH
Q 026351 20 FTAGEIVRDVIIGVSDGLTVPFALAAGLSGAN-ATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEI 98 (240)
Q Consensus 20 ~~~~~~lr~~V~G~~DGlv~~~glv~G~~~a~-~~~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei 98 (240)
..+.+|.|..++|.|||++++..++-|..... .+...++..++++.+.+++||..|+|+|.++|.|..+++.++++++.
T Consensus 6 ~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~al~mi~ge~~s~~~~~~~~~~~~~~~~~~~ 85 (229)
T COG1814 6 INRINIFRASVLGANDGLVSTAKLLEGVEAASIAAYLKLLIAGFAGLISGALSMIIGEYLSVSSQLDAELAEIQKERRLL 85 (229)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHH
Confidence 46788999999999999999999999999876 56677777779999999999999999999999999999998899999
Q ss_pred hcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhc-CChhHHHHHHHHhcCCCCCChhhHHHHH-HHHHHHHHHHhHhhhH
Q 026351 99 ITVPDTEAAEVAGILADYGIEPHEYGPVVNALRK-KPQAWLEFMMKFELGLEKPDPRRALHSA-LTIAIAYVLGGMVPLI 176 (240)
Q Consensus 99 ~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~-~~~~~~~~m~~~e~g~~~~~~~~P~~~a-l~~~~sf~lg~liPll 176 (240)
...|+-+.+++..+|..+|.++++++++.+.+.+ .+.. ..-..+.++......+|+.++ ++++++|++|+++|++
T Consensus 86 ~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l~sg~s~~~G~l~Pll 162 (229)
T COG1814 86 ALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVG---VHGRLSMGIGAYLSSRPLLAATLSSGISFIIGALLPLL 162 (229)
T ss_pred hcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999554 4322 222333444333336899999 7999999999999999
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhhC
Q 026351 177 PYMFIPRATDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKAVA 240 (240)
Q Consensus 177 P~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 240 (240)
||++.++...++.+|+++++++|+++|++++|+++.+++++++||+..|++++.++|.+|++++
T Consensus 163 p~~~~~~~~~al~~si~~~~l~L~ilG~~~a~~s~~~~~~~~lr~v~~gl~aa~lt~~vg~l~~ 226 (229)
T COG1814 163 PFFFLPDVLSALIASIILALLALAILGAVLARLSGASIAKSILRMVLLGLLAALLTYLVGRLFG 226 (229)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888999999999999999999999999999999999999999999999999999874
No 13
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=97.36 E-value=0.011 Score=49.68 Aligned_cols=139 Identities=15% Similarity=0.277 Sum_probs=66.7
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhC-------CCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCC---hhhHHHHHHH
Q 026351 93 REQEEIITVPDTEAAEVAGILADY-------GIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPD---PRRALHSALT 162 (240)
Q Consensus 93 re~~ei~~~p~~e~~el~~~~~~~-------Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~---~~~P~~~al~ 162 (240)
+.+++++.-|++|+++..+.|++. |-+++ +++++|- +|++..+..+. +++++..+ ..+.+..++.
T Consensus 9 ~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEe---eii~~LG-~P~~iA~~i~~-~~~i~~~~~~~~~~~~~~~i~ 83 (181)
T PF08006_consen 9 ELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEE---EIIAELG-SPKEIAREILA-EYSIKEEEKKKSWRNILRAIL 83 (181)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHH---HHHHHcC-CHHHHHHHHHH-hhhhhhhhccchhhhhHHHHH
Confidence 445566678999999998888765 44443 3344332 45555544332 23332222 2223344445
Q ss_pred HHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHH-------HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Q 026351 163 IAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVAL-------LIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGM 235 (240)
Q Consensus 163 ~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L-------~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~i 235 (240)
..++..+.+++.++|-++. ...++.++.++.+++ .+.+.+.+-.........++-.+.+|++...+++.+
T Consensus 84 ~~i~l~~~~~~~vl~~~~~---~~~~~~~~~i~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~i~~~glGlll~~~~~~l 160 (181)
T PF08006_consen 84 AIIGLGLLSFIIVLAILIV---LILLVLALIIAVIAFILSGIILLISGIFGGFFSIFFSLFFGIGLFGLGLLLIVITFYL 160 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444443333333221 112223332322222 222222222211111445677778888888777777
Q ss_pred Hhhh
Q 026351 236 AKAV 239 (240)
Q Consensus 236 G~l~ 239 (240)
.+++
T Consensus 161 ~k~~ 164 (181)
T PF08006_consen 161 TKLF 164 (181)
T ss_pred HHHH
Confidence 6654
No 14
>COG4709 Predicted membrane protein [Function unknown]
Probab=96.78 E-value=0.084 Score=44.89 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=56.8
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhC----CCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCC-hhhH--HHHHHHHHH
Q 026351 93 REQEEIITVPDTEAAEVAGILADY----GIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPD-PRRA--LHSALTIAI 165 (240)
Q Consensus 93 re~~ei~~~p~~e~~el~~~~~~~----Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~-~~~P--~~~al~~~~ 165 (240)
+.++.++.-|.+||.|...-|++. +..+.+=++++++|.+ |++..... +.|.++...+ +..+ ...+.....
T Consensus 9 eL~~yL~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~-P~eiA~ei-~s~~~~k~~~~~~~~~n~~~aii~~~ 86 (195)
T COG4709 9 ELEQYLEGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGD-PKEIAAEI-LSERGIKKEEVKPTQKNVRRAIIALI 86 (195)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCC-HHHHHHHH-HHHccchHHhccCcccchHHHHHHHH
Confidence 445667788889988887777654 4444444566666643 44444333 3344443222 1111 344556666
Q ss_pred HHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 026351 166 AYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYA 205 (240)
Q Consensus 166 sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~ 205 (240)
+-.+...+-.+|.++.. ..++..+.+..+++++.|++
T Consensus 87 ~L~~~~v~i~Lpl~~~v---i~~viailv~~lt~if~~~a 123 (195)
T COG4709 87 GLGLLAVIIGLPLLIGV---ILFVIAILVAALTLIFSGWA 123 (195)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655432 23334444444444444433
No 15
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=95.56 E-value=0.08 Score=46.34 Aligned_cols=82 Identities=10% Similarity=0.102 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhHhhhHhhhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Q 026351 157 LHSALTIAIAYVLGGMVPLIPYMFIPRA-TDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGM 235 (240)
Q Consensus 157 ~~~al~~~~sf~lg~liPllP~~~~~~~-~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~i 235 (240)
+.++++.+++-++ .++|....--.-.. ...+.++++...+.-+..|.+...--.+...|..+.-+..+.++..+...+
T Consensus 147 l~sg~s~~~G~l~-Pllp~~~~~~~~~al~~si~~~~l~L~ilG~~~a~~s~~~~~~~~lr~v~~gl~aa~lt~~vg~l~ 225 (229)
T COG1814 147 LSSGISFIIGALL-PLLPFFFLPDVLSALIASIILALLALAILGAVLARLSGASIAKSILRMVLLGLLAALLTYLVGRLF 225 (229)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666544 34444443322212 345555555555555555554443335567788899999999999999988
Q ss_pred Hhhh
Q 026351 236 AKAV 239 (240)
Q Consensus 236 G~l~ 239 (240)
|..+
T Consensus 226 ~~~~ 229 (229)
T COG1814 226 GIFL 229 (229)
T ss_pred HhhC
Confidence 8653
No 16
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=91.74 E-value=2.1 Score=35.79 Aligned_cols=79 Identities=14% Similarity=0.070 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHH
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAKGYFT-GNKPVKSALQTAFIGAIASAA 231 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s-~~~~~~~~l~~l~~G~~aa~~ 231 (240)
..+|++++++.++ ..+..++|.++.-........+..+.+.-++.=+..+.+ .+.. .++.+|...--++.+.++-.+
T Consensus 94 ~~~al~sgls~~~-G~llPLlp~~~~~~~~a~~~si~~~~~~L~~~G~~~~~~-~~~~~~~~~~r~~~~g~la~~~t~~v 171 (175)
T cd02437 94 LPSGLIQGISTTL-GGLLPLLPFLPFDLWLAAGIAVAIVLAILFILGLVIGKI-SKINVAISFVWAVGMVITGISLVFSV 171 (175)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999986666 446666676643322333345554444433333334444 3333 355667777777777766665
Q ss_pred HH
Q 026351 232 AF 233 (240)
Q Consensus 232 ~y 233 (240)
..
T Consensus 172 g~ 173 (175)
T cd02437 172 GK 173 (175)
T ss_pred HH
Confidence 54
No 17
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=91.28 E-value=7.2 Score=32.53 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAY 167 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf 167 (240)
..++.+.+.+..++.+++.+-.+++.+.|. +.+||...+..+++-
T Consensus 70 v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~-----------------~y~~~~~~l~~~l~~ 114 (193)
T PF06738_consen 70 VNRLSRRIVAGQLSLEEAIERLDEIDREPP-----------------RYPPWLVILAAGLAS 114 (193)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhCCC-----------------CCCHHHHHHHHHHHH
Confidence 455666677778899999888888887762 356676666555544
No 18
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=91.16 E-value=8.8 Score=32.76 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=22.5
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHH
Q 026351 127 VNALRKKPQAWLEFMMKFELGLEKPDP-RRALHSALTIAIAY 167 (240)
Q Consensus 127 ~~~L~~~~~~~~~~m~~~e~g~~~~~~-~~P~~~al~~~~sf 167 (240)
++++.-+|+.+.+.+....-.-..... .+||.-++.+++.+
T Consensus 48 A~~lfG~P~~~a~eli~~~~k~~~~~~~~~~~~~~ld~~L~~ 89 (206)
T PF06570_consen 48 ARQLFGDPKEYADELIKPLPKPKKKNKNSNPWLMALDNSLLF 89 (206)
T ss_pred HHHHcCCHHHHHHHHhccccCCcccccccchHHHHHHHHHHH
Confidence 345555777777665544322222222 36788777776654
No 19
>COG4709 Predicted membrane protein [Function unknown]
Probab=82.13 E-value=31 Score=29.52 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=21.5
Q ss_pred HHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026351 168 VLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAKGYFTG 211 (240)
Q Consensus 168 ~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~ 211 (240)
++.+++|++-..+.-=...-..++++++..+++..|...+.+.+
T Consensus 93 v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~agil~g~~~~ 136 (195)
T COG4709 93 VIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGILGGVILG 136 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 44455554443322101122335566666666666666665544
No 20
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=81.52 E-value=26 Score=28.10 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=12.7
Q ss_pred CCChhcHHHHHHHHhcCC
Q 026351 117 GIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 117 Gl~~~~a~~i~~~L~~~~ 134 (240)
=+++++++++.+...++|
T Consensus 9 lI~~~q~~~i~~~~~~~~ 26 (145)
T PF09925_consen 9 LITPEQAEAILAFYGERP 26 (145)
T ss_pred CCCHHHHHHHHHHhhccc
Confidence 358888888877777554
No 21
>PRK01844 hypothetical protein; Provisional
Probab=80.37 E-value=3 Score=30.08 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCChhcH
Q 026351 93 REQEEIITVPDTEAAEVAGILADYGIEPHEY 123 (240)
Q Consensus 93 re~~ei~~~p~~e~~el~~~~~~~Gl~~~~a 123 (240)
.-++++++||.--.+.++..+.+.|=.|.++
T Consensus 28 ~~~k~lk~NPpine~mir~Mm~QMGqkPSek 58 (72)
T PRK01844 28 YMMNYLQKNPPINEQMLKMMMMQMGQKPSQK 58 (72)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHhCCCccHH
Confidence 4467888999888899999999998776554
No 22
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=79.21 E-value=14 Score=28.90 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=29.4
Q ss_pred HhhccchhH---------HHHHHHHhhhccCCchHHHHHHHHHHHHHHHHhhhhccce
Q 026351 30 IIGVSDGLT---------VPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYL 78 (240)
Q Consensus 30 V~G~~DGlv---------~~~glv~G~~~a~~~~~~vl~aGla~~iAgalSMa~G~Yl 78 (240)
-||..|=.+ .++|+..|+ .+.--+++++.+++-..++++.|+
T Consensus 9 gFGflDN~iMI~AGd~Id~~lg~~~gi-------StmAAAalGN~vSDv~Gi~~~~~v 59 (111)
T PF10507_consen 9 GFGFLDNAIMIIAGDYIDNTLGVTFGI-------STMAAAALGNLVSDVAGIGLGGYV 59 (111)
T ss_pred eehhhhhhHHHHcchHHHHHHHHHHhH-------HHHHHHHHhhhhhhhhhhHHHHHH
Confidence 356666543 455555533 466678999999999999988886
No 23
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=79.11 E-value=18 Score=30.03 Aligned_cols=72 Identities=18% Similarity=0.051 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHH
Q 026351 155 RALHSALTIAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFG 234 (240)
Q Consensus 155 ~P~~~al~~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~ 234 (240)
-||..++..+++-++..+.+.-|.+ ++..++. .-++.|++ .|.+++.++....+.+..|++.+.++|-
T Consensus 46 GP~~g~~~a~i~~ll~~l~~~g~~~-------afpg~~~----~a~laGli-yrk~~~~~~a~~ge~igt~iig~~~s~p 113 (160)
T TIGR02359 46 GPWYALAVAFIIGLLRNTLGLGTVL-------AFPGGMP----GALLAGLL-YRFGRKHYWASLGEILGTGIIGSLLAYP 113 (160)
T ss_pred chHHHHHHHHHHHHHHHHhCCCchH-------HHHHHHH----HHHHHHHH-HHHccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888776432222 2222111 12234443 4666777788899999999999998887
Q ss_pred HHhh
Q 026351 235 MAKA 238 (240)
Q Consensus 235 iG~l 238 (240)
+-.+
T Consensus 114 i~~~ 117 (160)
T TIGR02359 114 VAAW 117 (160)
T ss_pred HHHH
Confidence 6544
No 24
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=77.06 E-value=53 Score=29.19 Aligned_cols=100 Identities=7% Similarity=-0.084 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhcccchh
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMFIPRAT 185 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~ 185 (240)
.+++....+...++-++|++.-+++.++|. +-+||...+..+++...+ .+++-. .+
T Consensus 92 v~~i~~~v~~~~~~~e~a~~~l~~i~~~~~-----------------~y~~~l~~~~~g~~~~~f-----~~l~gG--~w 147 (250)
T COG2966 92 VNRISRAVEHGRLDLEEAHKKLDEIQKQPL-----------------RYSRWLVLLMAGLAAAAF-----ALLFGG--GW 147 (250)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhhCcc-----------------ccccHHHHHHHHHHHHHH-----HHHcCC--ch
Confidence 455666666777888888888888877662 456676665555543221 122222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Q 026351 186 DAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASA 230 (240)
Q Consensus 186 ~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~ 230 (240)
..+ ....++..+.+.+..+..|....+..-..+--+..+.++.+
T Consensus 148 ~d~-~iaf~~~~~~~~~~~~l~r~~~~~~~~~~~a~~~~~~~a~~ 191 (250)
T COG2966 148 LDF-LIAFFAGLLGFLLRQYLSRKGNPDFFFEVLASFIASIVAVL 191 (250)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 222 22233333444455555555444444444433444444333
No 25
>PRK11677 hypothetical protein; Provisional
Probab=76.11 E-value=12 Score=30.20 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHH
Q 026351 59 TAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVPDTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWL 138 (240)
Q Consensus 59 ~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~ 138 (240)
+..++++|.|.+...+...+..+..++ +.+.++|..+.+..-+.-|++|.+.+.+ ...+.+.|.++=..+.
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~~~~--q~~le~eLe~~k~ele~YkqeV~~HFa~-------TA~Ll~~L~~~Y~~Ly 74 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRKLRQ--QQALQYELEKNKAELEEYRQELVSHFAR-------SAELLDTMAKDYRQLY 74 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 334455555555444444444433221 2233333334444444557778777763 3345555554444444
Q ss_pred HHH
Q 026351 139 EFM 141 (240)
Q Consensus 139 ~~m 141 (240)
++|
T Consensus 75 ~Hl 77 (134)
T PRK11677 75 QHM 77 (134)
T ss_pred HHH
Confidence 444
No 26
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=70.42 E-value=13 Score=24.21 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHH
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKF 144 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~ 144 (240)
.+++.+.|...|+++.+++++++.+.+.|+.-++.+++.
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 467788899999999999999999986544334444433
No 27
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.26 E-value=7.7 Score=27.87 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=25.7
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCChhcH
Q 026351 93 REQEEIITVPDTEAAEVAGILADYGIEPHEY 123 (240)
Q Consensus 93 re~~ei~~~p~~e~~el~~~~~~~Gl~~~~a 123 (240)
.-++++.+||.--.+.++..|.+.|-.|.++
T Consensus 28 ~~~k~lk~NPpine~~iR~M~~qmGqKpSe~ 58 (71)
T COG3763 28 QMKKQLKDNPPINEEMIRMMMAQMGQKPSEK 58 (71)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHhCCCchHH
Confidence 5567888999888899999999998877654
No 28
>PRK10404 hypothetical protein; Provisional
Probab=70.21 E-value=27 Score=26.75 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=13.0
Q ss_pred hhhHHHH-HHHHHHHHHHHhH
Q 026351 153 PRRALHS-ALTIAIAYVLGGM 172 (240)
Q Consensus 153 ~~~P~~~-al~~~~sf~lg~l 172 (240)
..|||++ |+..+++|++|.+
T Consensus 77 ~e~Pw~avGiaagvGlllG~L 97 (101)
T PRK10404 77 HEKPWQGIGVGAAVGLVLGLL 97 (101)
T ss_pred HhCcHHHHHHHHHHHHHHHHH
Confidence 4588854 5666666766655
No 29
>PRK00523 hypothetical protein; Provisional
Probab=68.88 E-value=8.9 Score=27.70 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=24.9
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCChhcH
Q 026351 93 REQEEIITVPDTEAAEVAGILADYGIEPHEY 123 (240)
Q Consensus 93 re~~ei~~~p~~e~~el~~~~~~~Gl~~~~a 123 (240)
.-++++++||.--.+.++..+.+.|=.|.++
T Consensus 29 ~~~k~l~~NPpine~mir~M~~QMGqKPSek 59 (72)
T PRK00523 29 MFKKQIRENPPITENMIRAMYMQMGRKPSES 59 (72)
T ss_pred HHHHHHHHCcCCCHHHHHHHHHHhCCCccHH
Confidence 4467888899888899999999998776554
No 30
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=68.60 E-value=72 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccc
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPR 183 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~ 183 (240)
.+|++++.++-.+.+.++..-|.+|+++.++
T Consensus 103 Yks~~~~~ia~~~~~~~~~~g~~~p~~~~~d 133 (189)
T TIGR02185 103 YKNKRKVTIAYVLFFLLVAMGPILPIWLFKD 133 (189)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455666666556556677788889888654
No 31
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=67.30 E-value=85 Score=27.30 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHHHHHHHhHhhhHhhh-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHH
Q 026351 152 DPRRALHSALTIAIAYVLGGMVPLIPYM-------FIPRATDAVLASVAVTLVALLIFGYAKGYFTG-NKPVKSALQTAF 223 (240)
Q Consensus 152 ~~~~P~~~al~~~~sf~lg~liPllP~~-------~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~-~~~~~~~l~~l~ 223 (240)
++...-.....+|+.+.+--++|.+-.. .......++....++++..+..+....+.-.- ++..+..+-=++
T Consensus 133 ~P~~aAl~sflsf~~ggliPLlp~~~~~~~~~~~~~~~~~~~s~~~~~~~~L~~~G~~~~~~~~~~~~~~~l~~~~~G~~ 212 (225)
T cd02434 133 SPLKTALVTFLSFLVFGIIPLLPYLLGLYYYSQKEIDSVFALSILIFVAFTLFLLGSFKSKLYNGKWIISGIIMLINGAA 212 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3433334444556666666666665211 01112234444244455555544443333333 345555555555
Q ss_pred HHHHHHHHHH
Q 026351 224 IGAIASAAAF 233 (240)
Q Consensus 224 ~G~~aa~~~y 233 (240)
.+.++-.+..
T Consensus 213 aa~~ty~iG~ 222 (225)
T cd02434 213 SGGVSFFLGV 222 (225)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 32
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=67.27 E-value=56 Score=27.69 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=34.1
Q ss_pred HHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHhh
Q 026351 112 ILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIPY 178 (240)
Q Consensus 112 ~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP~ 178 (240)
.+.++.++++..+++.+.+.+- -.|+|.+.+-.+-. -.++...-...++..++.+++|.+|+
T Consensus 81 ~l~~r~i~~~~l~~~~~~~~p~-~~~ler~~rpRl~~----l~~~~~~r~~~g~~~~l~~~~~~Lpl 142 (187)
T PF06055_consen 81 FLRRRSISREKLRKAVRRLRPW-LRRLERLLRPRLSF----LTSGPAERVLAGLCILLLAFLIALPL 142 (187)
T ss_pred HHHhCCCCHHHHHHHHHHHHHH-HHHHHHHhCCCchH----hhcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3555667777777777776653 23444333333221 12222233345666777888888886
No 33
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=67.18 E-value=5.3 Score=28.24 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=23.3
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCChhcH
Q 026351 93 REQEEIITVPDTEAAEVAGILADYGIEPHEY 123 (240)
Q Consensus 93 re~~ei~~~p~~e~~el~~~~~~~Gl~~~~a 123 (240)
.-++++++||.--.+.++..|.+.|=.|.++
T Consensus 21 ~~~k~l~~NPpine~mir~M~~QMG~kpSek 51 (64)
T PF03672_consen 21 YMEKQLKENPPINEKMIRAMMMQMGRKPSEK 51 (64)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHhCCCccHH
Confidence 4456777888777788899999988776544
No 34
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=67.11 E-value=32 Score=25.45 Aligned_cols=21 Identities=14% Similarity=0.441 Sum_probs=14.5
Q ss_pred hhhHHHH-HHHHHHHHHHHhHh
Q 026351 153 PRRALHS-ALTIAIAYVLGGMV 173 (240)
Q Consensus 153 ~~~P~~~-al~~~~sf~lg~li 173 (240)
..|||++ ++..+++|++|-++
T Consensus 70 ~e~P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 70 RENPWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred HHChHHHHHHHHHHHHHHHHHH
Confidence 5789865 56667777777654
No 35
>PRK10132 hypothetical protein; Provisional
Probab=61.10 E-value=55 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=15.2
Q ss_pred hhhHHH-HHHHHHHHHHHHhHh
Q 026351 153 PRRALH-SALTIAIAYVLGGMV 173 (240)
Q Consensus 153 ~~~P~~-~al~~~~sf~lg~li 173 (240)
..|||+ .|+..+++|++|.++
T Consensus 83 ~~~Pw~svgiaagvG~llG~Ll 104 (108)
T PRK10132 83 RERPWCSVGTAAAVGIFIGALL 104 (108)
T ss_pred HhCcHHHHHHHHHHHHHHHHHH
Confidence 468985 477777888887763
No 36
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=61.02 E-value=39 Score=23.08 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHHHHHHHH
Q 026351 190 ASVAVTLVALLIFGYAKGYFTGNK--PVKSALQTAFIGAIASAAAF 233 (240)
Q Consensus 190 ~s~~~~~~~L~~~G~~~a~~s~~~--~~~~~l~~l~~G~~aa~~~y 233 (240)
+++..+++....+||+.+.+++.+ +..+.+-.+..|++...+..
T Consensus 5 vt~fWs~il~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~ 50 (57)
T PF11151_consen 5 VTFFWSFILGEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIA 50 (57)
T ss_pred ehhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 445566666788899998888864 44555555555555544443
No 37
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=59.86 E-value=1.2e+02 Score=26.70 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=43.7
Q ss_pred ChhhHHHHHHHHHHHHHHHhHhhhHhhhc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHH
Q 026351 152 DPRRALHSALTIAIAYVLGGMVPLIPYMF-IPRATDAVLASVAVTLVALLIFGYAKGYFT-GNKPVKSALQTAFIGAIAS 229 (240)
Q Consensus 152 ~~~~P~~~al~~~~sf~lg~liPllP~~~-~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s-~~~~~~~~l~~l~~G~~aa 229 (240)
++...-.....+|+.+.+--++|.+...- ......++..+ ++++..+..+....+..+ -++..+..+--++.++++-
T Consensus 149 ~P~~aAl~sflsF~ig~liPLLPf~~~~~~~~~~~~s~~~~-~~~L~~lG~~~a~~s~~~~~~~~l~~~~~G~~aa~vsy 227 (234)
T cd02433 149 NPWSAAVSSFLLFALGALIPVLPFLFGMSGLAALVLSVLLV-GLALLATGAVTGLLSGRSPGISALRQLAIGGGAAAVTY 227 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34433334556666677777777742111 01122334443 334444444433333333 3557777777777777777
Q ss_pred HHHHHHH
Q 026351 230 AAAFGMA 236 (240)
Q Consensus 230 ~~~y~iG 236 (240)
++.+++|
T Consensus 228 ~iG~l~~ 234 (234)
T cd02433 228 LLGLLFG 234 (234)
T ss_pred HHHHHcC
Confidence 7776654
No 38
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=57.98 E-value=1.4e+02 Score=27.70 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHH-HHHHHHHHHHhh
Q 026351 184 ATDAVLASVAVTLVALLIFGYAKGYFTGN-KPVKSALQTAFIGA-IASAAAFGMAKA 238 (240)
Q Consensus 184 ~~~a~~~s~~~~~~~L~~~G~~~a~~s~~-~~~~~~l~~l~~G~-~aa~~~y~iG~l 238 (240)
...-++-+.+++=+.-=+.|...+-..+. +..+.+++++++|+ ++.++++.+|.+
T Consensus 135 S~avIIGAMlIaPlmgPi~a~a~g~~~~d~~L~~rsl~~l~~g~~~ai~~~~~~~~~ 191 (325)
T TIGR00341 135 NAVILIGAMIIAPLLGPIHGFAVNLSVGDVKLAFRSAKNLLFDLFLVIVFSTIFAMM 191 (325)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555554 46688888888884 455566666654
No 39
>PF03035 RNA_capsid: Calicivirus putative RNA polymerase/capsid protein; InterPro: IPR004278 Caliciviruses are a small round-structured virus group defined by RNA-dependent RNA polymerase and capsid diversity.
Probab=57.80 E-value=23 Score=30.93 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=13.5
Q ss_pred HHHHHhCCCChhcHHHHH
Q 026351 110 AGILADYGIEPHEYGPVV 127 (240)
Q Consensus 110 ~~~~~~~Gl~~~~a~~i~ 127 (240)
.+.|.+-||++.||.+.+
T Consensus 72 ~~~L~~gGFS~aDAAR~a 89 (226)
T PF03035_consen 72 QGVLTAGGFSPADAARGA 89 (226)
T ss_pred HHHHHhcCCCHHHHHHHh
Confidence 456677899999886653
No 40
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=55.59 E-value=2.1e+02 Score=27.99 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHhHhhhHhh
Q 026351 154 RRALHSALTIAIAYVLGGMVPLIPY 178 (240)
Q Consensus 154 ~~P~~~al~~~~sf~lg~liPllP~ 178 (240)
+.|...+++..++..+.|+-++.-|
T Consensus 268 R~~~~i~~~v~~~qq~sGi~ai~~Y 292 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINAIFFY 292 (485)
T ss_pred hHHHHHHHHHHHHHHhcCcceeHHH
Confidence 3445555555555555555555544
No 41
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=54.56 E-value=62 Score=21.58 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=29.6
Q ss_pred HHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026351 164 AIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAKG 207 (240)
Q Consensus 164 ~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a 207 (240)
++..++|..+-+-|+.+......+..++-+++.++.+++++..+
T Consensus 3 w~~~llGlwli~SPWvlgf~~~~~~~~~~vi~G~~v~~la~~~~ 46 (51)
T PF03779_consen 3 WLNLLLGLWLIVSPWVLGFSATAAAAWNNVIVGILVALLALWFL 46 (51)
T ss_pred HHHHHHHHHHHHhHHHcccCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777888887544444566777777777777775554
No 42
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=53.04 E-value=85 Score=22.70 Aligned_cols=11 Identities=18% Similarity=0.290 Sum_probs=4.2
Q ss_pred HHhcCChhHHH
Q 026351 129 ALRKKPQAWLE 139 (240)
Q Consensus 129 ~L~~~~~~~~~ 139 (240)
.|.+++..+.+
T Consensus 17 ~L~~~DP~fa~ 27 (82)
T PF11239_consen 17 QLRADDPRFAA 27 (82)
T ss_pred HHHhcCcHHHH
Confidence 34433333343
No 43
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.36 E-value=38 Score=25.46 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHH
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALH 158 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~ 158 (240)
++||.+-|+..|++.+ +++++|.-+++.+-+.+ .+.......||.
T Consensus 12 ~~ELq~nf~~~~ls~~---~ia~dL~~s~~~le~vL-----~l~~~~~~~vW~ 56 (89)
T PF10078_consen 12 RQELQANFELSGLSLE---QIAADLGTSPEHLEQVL-----NLKQPFPEDVWI 56 (89)
T ss_pred HHHHHHHHHHcCCCHH---HHHHHhCCCHHHHHHHH-----cCCCCCcccchH
Confidence 5788889999999864 67888888887655543 444444555653
No 44
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=52.16 E-value=1.7e+02 Score=28.74 Aligned_cols=49 Identities=2% Similarity=0.072 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhHhhh-cccchhHHHHHHHHHHHHHHHHHHH
Q 026351 156 ALHSALTIAIAYVLGGMVPLIPYM-FIPRATDAVLASVAVTLVALLIFGY 204 (240)
Q Consensus 156 P~~~al~~~~sf~lg~liPllP~~-~~~~~~~a~~~s~~~~~~~L~~~G~ 204 (240)
-|+.|+++-+.--+..++..++.+ |.....-.|.++.+++++.-+++..
T Consensus 436 G~~rAf~tI~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~ 485 (506)
T COG0342 436 GFKRAFSTILDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAI 485 (506)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhH
Confidence 366777776666666666666644 3333334565655555544444333
No 45
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=51.74 E-value=71 Score=23.79 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=10.1
Q ss_pred eeeehHHHHHHHHHHHHHHH
Q 026351 79 AAKSEADHYARELKREQEEI 98 (240)
Q Consensus 79 s~~se~d~~~~e~~re~~ei 98 (240)
|+..|.|..+..+.+=++.+
T Consensus 2 ~V~~eId~lEekl~~cr~~l 21 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRL 21 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555544444
No 46
>PRK07668 hypothetical protein; Validated
Probab=50.89 E-value=1.8e+02 Score=25.95 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=30.5
Q ss_pred hcCchHHHHHHHHHHHhCCCChhcHHHHHHHHh-cCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Q 026351 99 ITVPDTEAAEVAGILADYGIEPHEYGPVVNALR-KKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVL 169 (240)
Q Consensus 99 ~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~-~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~l 169 (240)
.+-+|+|++++.+-+...-+..+.--+=++++. ++|+.+.|.+... .+....++...+..++...+
T Consensus 20 ~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~yA~EL~~~-----~~~~~~~~~~~l~~~ii~~l 86 (254)
T PRK07668 20 KGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKEYANELVKE-----MEVDRKENIKLILFIIIGIL 86 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHHHHHHHhcc-----cCCCcchHHHHHHHHHHHHH
Confidence 455677766654444332111111111123333 3777777665542 12233466666655555544
No 47
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=50.07 E-value=77 Score=25.37 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026351 192 VAVTLVALLIFGYAKGY 208 (240)
Q Consensus 192 ~~~~~~~L~~~G~~~a~ 208 (240)
+++++++.|++||+.+.
T Consensus 85 ilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 85 ILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555554444
No 48
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=49.88 E-value=52 Score=25.47 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=15.8
Q ss_pred hhhHHH-HHHHHHHHHHHHhHh
Q 026351 153 PRRALH-SALTIAIAYVLGGMV 173 (240)
Q Consensus 153 ~~~P~~-~al~~~~sf~lg~li 173 (240)
..|||+ .|+..++++++|.++
T Consensus 80 ~e~PWq~VGvaAaVGlllGlLl 101 (104)
T COG4575 80 RENPWQGVGVAAAVGLLLGLLL 101 (104)
T ss_pred HcCCchHHHHHHHHHHHHHHHH
Confidence 468995 577788888888765
No 49
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=49.69 E-value=2e+02 Score=27.28 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=37.5
Q ss_pred CChhhHHHHHHHHHHHHHHHhHhhhHhh-hcccchhHHHHHHHHHHHHHHHHH-HHHHHHHcCCchhHHHHHHH
Q 026351 151 PDPRRALHSALTIAIAYVLGGMVPLIPY-MFIPRATDAVLASVAVTLVALLIF-GYAKGYFTGNKPVKSALQTA 222 (240)
Q Consensus 151 ~~~~~P~~~al~~~~sf~lg~liPllP~-~~~~~~~~a~~~s~~~~~~~L~~~-G~~~a~~s~~~~~~~~l~~l 222 (240)
+++.+-|++|++.++.|++.|+.--.-. ++.. . +.-.++.+..+..|..+ +.+.+-+++.+.+.+++-+.
T Consensus 279 ~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~-l-P~~li~~lAGLALlg~l~~sl~~A~~~~~~r~aAlvtF 350 (378)
T PF03594_consen 279 PDPSRRYIAAVAAGVFYLLFGLFAAALVALFAA-L-PPALIAALAGLALLGTLGGSLQTAFSDEKYREAALVTF 350 (378)
T ss_pred CCcccchHHHHHHhHHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence 4566679999999999998887643322 2221 1 12223333333333333 34445555555565555543
No 50
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=49.20 E-value=14 Score=27.33 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=20.7
Q ss_pred hhhccceeeeehHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 026351 72 MGLGGYLAAKSEADHYARELKREQEEIITVPDTEAAEVAGIL 113 (240)
Q Consensus 72 Ma~G~Yls~~se~d~~~~e~~re~~ei~~~p~~e~~el~~~~ 113 (240)
.=+|.||+.+.+-.-.+...-+|.|++-+ ++|++.|+.++
T Consensus 36 ~~iGdyLA~~vdP~N~EerlLkELW~va~--e~Eq~~LA~lm 75 (81)
T PF11588_consen 36 YQIGDYLAKNVDPKNPEERLLKELWDVAD--EEEQHALANLM 75 (81)
T ss_dssp HHHHHHHHT-----SHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence 34578998877766555555666666543 55666665544
No 51
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=48.73 E-value=1.5e+02 Score=24.38 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=17.2
Q ss_pred HHHHHhCCCChhcHHHHHHHHh
Q 026351 110 AGILADYGIEPHEYGPVVNALR 131 (240)
Q Consensus 110 ~~~~~~~Gl~~~~a~~i~~~L~ 131 (240)
.++.++.|=|++.|+++.++..
T Consensus 44 eeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 44 EEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHcCCHHHHHHHHHHhhh
Confidence 5677888999888888887654
No 52
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=48.66 E-value=1.1e+02 Score=22.82 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHhhhHhhhcc
Q 026351 161 LTIAIAYVLGGMVPLIPYMFI 181 (240)
Q Consensus 161 l~~~~sf~lg~liPllP~~~~ 181 (240)
....+.-++++++|++..+..
T Consensus 23 ~~~i~~~~~~a~i~~l~~~~~ 43 (112)
T PF14015_consen 23 IASIILSVLGAVIPVLASLSG 43 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344444557888888665543
No 53
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=47.87 E-value=1.4e+02 Score=27.85 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHH
Q 026351 108 EVAGILADYGIEPHEYGPVVNALRKKPQAWLEFM 141 (240)
Q Consensus 108 el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m 141 (240)
.++++--+.+=.+...+.+++++.++-+.+.+.+
T Consensus 278 ~~v~fave~~~d~~~vk~vv~el~k~~~~f~~ql 311 (336)
T PF05055_consen 278 ALVDFAVERGEDEEAVKEVVKELKKNVESFTEQL 311 (336)
T ss_pred HHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHH
Confidence 3444445555556678888999998887777654
No 54
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=45.06 E-value=43 Score=26.98 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 104 TEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 104 ~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
..++-+.+.|.++||+.+++..+.++...
T Consensus 127 ~~k~Ki~~~L~rkGF~~~~I~~~l~~~~~ 155 (157)
T PRK00117 127 KEKAKLVRFLARRGFSMDVIQRVLRNALD 155 (157)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHhhhc
Confidence 56788999999999999999888877543
No 55
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=45.04 E-value=2e+02 Score=24.55 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=6.3
Q ss_pred chHHHHHHHHHHHh
Q 026351 102 PDTEAAEVAGILAD 115 (240)
Q Consensus 102 p~~e~~el~~~~~~ 115 (240)
++++.+++.+.+.+
T Consensus 95 ~~~~a~~i~~~l~~ 108 (213)
T PF01988_consen 95 SEEDAEEIAEELSK 108 (213)
T ss_pred CHHHHHHHHHHHHh
Confidence 44444444444433
No 56
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.56 E-value=1.7e+02 Score=23.67 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=25.0
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHH
Q 026351 92 KREQEEIITVPDTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKF 144 (240)
Q Consensus 92 ~re~~ei~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~ 144 (240)
++|...+.+.-|..|+||...+.+. .++.+.|.+|=+.+-++|-.-
T Consensus 40 q~ELe~~K~~ld~~rqel~~HFa~s-------AeLlktl~~dYqklyqHmA~s 85 (138)
T COG3105 40 QYELEKVKAQLDEYRQELVKHFARS-------AELLKTLAQDYQKLYQHMAKS 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 4455555566677788888877652 234444444434444444433
No 57
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=44.53 E-value=2.2e+02 Score=25.11 Aligned_cols=25 Identities=20% Similarity=0.016 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 026351 214 PVKSALQTAFIGAIASAAAFGMAKA 238 (240)
Q Consensus 214 ~~~~~l~~l~~G~~aa~~~y~iG~l 238 (240)
.-+..-+.+......+.+++.+|.+
T Consensus 253 ~~~~~~~~~~~~m~~g~~~~~~~~~ 277 (279)
T PRK09573 253 GASKASKYLKIIMILGLIAFLIGSL 277 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4466777778888888888888875
No 58
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=44.16 E-value=1.3e+02 Score=24.94 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhc
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMF 180 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~ 180 (240)
..+|+.. ++|.++|+.-.++-+-...|
T Consensus 33 ~~HP~L~-~~M~~~y~~~~~lm~~spy~ 59 (155)
T PF10777_consen 33 RNHPYLC-LAMYAAYLAVAALMYYSPYF 59 (155)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHhcchh
Confidence 3568777 67888886665554443333
No 59
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=42.61 E-value=58 Score=27.83 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Q 026351 186 DAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGM 235 (240)
Q Consensus 186 ~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~i 235 (240)
..+.++.+.+.++++++++..+ +.+-.+.++++.+.++++|
T Consensus 135 Es~~~~~~As~v~a~~fs~~~~---------t~igi~g~ail~a~v~s~I 175 (187)
T PF01024_consen 135 ESLAAGGAASAVAAFAFSFILG---------TPIGILGIAILMAVVGSLI 175 (187)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHh
Confidence 3556666777777777777776 4455555555555555554
No 60
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=42.53 E-value=3.5e+02 Score=26.75 Aligned_cols=127 Identities=16% Similarity=0.145 Sum_probs=65.5
Q ss_pred HHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhc---CCCCCChhhHHHHHHHHHHHHHHHhHhhhHhhhcccch
Q 026351 108 EVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFEL---GLEKPDPRRALHSALTIAIAYVLGGMVPLIPYMFIPRA 184 (240)
Q Consensus 108 el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~---g~~~~~~~~P~~~al~~~~sf~lg~liPllP~~~~~~~ 184 (240)
-+.-.|++..++++|++..++.|.-+-=...-..+..=+ =...++.+.|.+.++.+.+.=.+..+.+..++- +.
T Consensus 337 iv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~~~---~~ 413 (518)
T COG0728 337 IVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPPLG---HV 413 (518)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhhcc---ch
Confidence 345567777899999999888887654222222111110 012345678999998888877766633333322 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHc--CCchhHH--HHHHHHHHHHHHHHHHHHHh
Q 026351 185 TDAVLASVAVTLVALLIFGYAKGYFT--GNKPVKS--ALQTAFIGAIASAAAFGMAK 237 (240)
Q Consensus 185 ~~a~~~s~~~~~~~L~~~G~~~a~~s--~~~~~~~--~l~~l~~G~~aa~~~y~iG~ 237 (240)
..++..|+.-..-+.++.-...-|.. .++-|.. .++.++...+++.+.+.+-.
T Consensus 414 giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~~~~k~~l~~~i~~~~~~~~~~ 470 (518)
T COG0728 414 GLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFLILKLLLASAIMAAALLALLH 470 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444443332333333333333322 2222221 35666666666666665543
No 61
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=42.50 E-value=1.3e+02 Score=21.97 Aligned_cols=52 Identities=27% Similarity=0.471 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhHhhhHhhh--------cccchhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026351 157 LHSALTIAIAYVLGGMVPLIPYM--------FIPRATDAVLASVAVTLVALLIFGYAKGYFT 210 (240)
Q Consensus 157 ~~~al~~~~sf~lg~liPllP~~--------~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s 210 (240)
+..++..|..|.+=.+ ++||+ +.++..+|+..-.++.++.+..+|.+.+.+-
T Consensus 11 l~~a~~vF~YYt~Wvl--llPFvd~d~~i~~~F~Pr~yAi~lP~~lll~~~~~vg~f~g~vm 70 (78)
T PF07297_consen 11 LAVALSVFTYYTIWVL--LLPFVDEDHPIHSFFPPREYAIILPIFLLLLGLSGVGTFLGYVM 70 (78)
T ss_pred HHHHHHHHHHHHHHHH--HhcccCCCchHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777766654 55553 2233566888888888888888888887664
No 62
>PRK14137 recX recombination regulator RecX; Provisional
Probab=42.20 E-value=81 Score=26.93 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
..+.-..||++.|.++|++++..+.+++.|.++.
T Consensus 52 ~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~g 85 (195)
T PRK14137 52 ARAMTAAELRAKLERRSEDEALVTEVLERVQELG 85 (195)
T ss_pred cchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 3455568999999999999999999999998753
No 63
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=41.70 E-value=45 Score=25.83 Aligned_cols=42 Identities=12% Similarity=0.302 Sum_probs=33.5
Q ss_pred HHHHHHHHHhC-CCChhcHHHHHHHHhcCChhHHHHHHHHhcC
Q 026351 106 AAEVAGILADY-GIEPHEYGPVVNALRKKPQAWLEFMMKFELG 147 (240)
Q Consensus 106 ~~el~~~~~~~-Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g 147 (240)
+..+.++...+ +++.++|-++.+.+-.+|+.|++..-+.++-
T Consensus 37 r~~is~ling~~~iT~dmAlrL~k~fGtspefWlNlQ~~ydL~ 79 (104)
T COG3093 37 RNTISELINGRRAITADMALRLAKVFGTSPEFWLNLQNAYDLW 79 (104)
T ss_pred HHHHHHHHcCCcCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34555566554 9999999999999999999999977666653
No 64
>PRK11032 hypothetical protein; Provisional
Probab=41.41 E-value=2.1e+02 Score=23.84 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHH---HHHH-HhCCCChhcHHHHHHHHhcCChhHHHHH
Q 026351 85 DHYARELKREQEEIITVPDTEAAEV---AGIL-ADYGIEPHEYGPVVNALRKKPQAWLEFM 141 (240)
Q Consensus 85 d~~~~e~~re~~ei~~~p~~e~~el---~~~~-~~~Gl~~~~a~~i~~~L~~~~~~~~~~m 141 (240)
+.|++-..+-...+++.|+.-++.+ ++.. ...-+++++++.+.+.+++|=+.+.+.+
T Consensus 6 ~~Y~~ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~ 66 (160)
T PRK11032 6 QYYRELVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSY 66 (160)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666664322221 2222 2347899999999999999987777643
No 65
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=40.75 E-value=1.7e+02 Score=22.57 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHH
Q 026351 185 TDAVLASVAVTLVALLIFGYAKGYFTGNKPV-KSALQTAFIGAIASAAAF 233 (240)
Q Consensus 185 ~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~-~~~l~~l~~G~~aa~~~y 233 (240)
..--....++..+..++=|++.+|..+++-| +..+.=+.--++...+++
T Consensus 37 ~~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~y~~il~lis~ 86 (116)
T PF12670_consen 37 SILPWLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLVGLLYFLILLLISF 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 3344556778888899999999999987755 444433333333333333
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.69 E-value=97 Score=26.72 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhHhh
Q 026351 159 SALTIAIAYVLGGMVP 174 (240)
Q Consensus 159 ~al~~~~sf~lg~liP 174 (240)
-|.+.+++.++|-++|
T Consensus 177 Gg~v~~~GlllGlilp 192 (206)
T PRK10884 177 GGGVAGIGLLLGLLLP 192 (206)
T ss_pred chHHHHHHHHHHHHhc
Confidence 3455555555555544
No 67
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.54 E-value=33 Score=25.50 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=28.0
Q ss_pred CChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHH
Q 026351 118 IEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYV 168 (240)
Q Consensus 118 l~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~ 168 (240)
|..++.++|+..|+++.+. +...+..|+++|.+|.-.|+
T Consensus 20 F~~~dp~~IA~SLk~Sae~------------S~RRk~~pf~SAMSML~FYI 58 (86)
T PF11373_consen 20 FKSDDPKKIAASLKRSAEH------------SRRRKATPFRSAMSMLNFYI 58 (86)
T ss_pred cCCCCHHHHHHHHHHHHHh------------hcccCCCchHHHHHHHHHHH
Confidence 5668899999999976531 11235679999998877664
No 68
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.18 E-value=47 Score=22.69 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.3
Q ss_pred cceeee
Q 026351 76 GYLAAK 81 (240)
Q Consensus 76 ~Yls~~ 81 (240)
.++.-+
T Consensus 42 ~~~~~r 47 (68)
T PF06305_consen 42 SRLRLR 47 (68)
T ss_pred HHHHHH
Confidence 344333
No 69
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=40.04 E-value=1.1e+02 Score=23.00 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhcCchHH--HHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 84 ADHYARELKREQEEIITVPDTE--AAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 84 ~d~~~~e~~re~~ei~~~p~~e--~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
.|....|.+|.+-.-++.|..+ ++.|..+++.=|+++++.-.-++.|.+.-
T Consensus 24 ~d~~L~eLARL~iRY~gFPGA~diq~DL~kiL~~W~lteeeLf~kTR~I~~~g 76 (90)
T PF11691_consen 24 TDYNLAELARLRIRYQGFPGARDIQKDLDKILQKWGLTEEELFEKTREIHASG 76 (90)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 4455677888888888888776 88899999999999998888888887653
No 70
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=39.87 E-value=1.7e+02 Score=26.75 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHhHhhhHhhhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHcCC---ch----hHHHHHHHHHH
Q 026351 154 RRALHSALTIAIAYVLGGMVPLIPYMFIPR-ATDAVLASVAVTLVALLIFGYAKGYFTGN---KP----VKSALQTAFIG 225 (240)
Q Consensus 154 ~~P~~~al~~~~sf~lg~liPllP~~~~~~-~~~a~~~s~~~~~~~L~~~G~~~a~~s~~---~~----~~~~l~~l~~G 225 (240)
.||...| .+++.+++...|..|+++..- ...--..+-..+-++|+++|+..++-..+ ++ +...+|+++.=
T Consensus 243 ~nP~~~a--~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P 320 (385)
T PF03547_consen 243 KNPPLIA--IILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILP 320 (385)
T ss_pred hCcHHHH--HHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHH
Confidence 3454443 345556666666777433210 11223344556778899999988864322 11 13667888888
Q ss_pred HHHHHHHHHHH
Q 026351 226 AIASAAAFGMA 236 (240)
Q Consensus 226 ~~aa~~~y~iG 236 (240)
++...+.+.++
T Consensus 321 ~i~~~~~~~~~ 331 (385)
T PF03547_consen 321 LIGIGIVFLLG 331 (385)
T ss_pred HHHHHHHHHHC
Confidence 88888888776
No 71
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=39.42 E-value=29 Score=23.20 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 026351 89 RELKREQEEIITVPDTEAAEVAGILADY 116 (240)
Q Consensus 89 ~e~~re~~ei~~~p~~e~~el~~~~~~~ 116 (240)
.|..+....++...+.|.+++++.|+.|
T Consensus 11 ~eL~~rl~~LD~~ME~Eieelr~RY~~K 38 (49)
T PF11629_consen 11 EELQQRLASLDPEMEQEIEELRQRYQAK 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 3455566677777888889999988764
No 72
>COG4129 Predicted membrane protein [Function unknown]
Probab=39.33 E-value=3.2e+02 Score=25.37 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHH
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTL 196 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~ 196 (240)
..+-++.|.--..+.++|+++-.+-+.+.....+.+.+++++.+
T Consensus 50 ~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v~~~i~i 93 (332)
T COG4129 50 IKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVVLLIII 93 (332)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 34558889999999999999999888766544445544444433
No 73
>PRK10847 hypothetical protein; Provisional
Probab=38.81 E-value=1.1e+02 Score=26.19 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhccce
Q 026351 57 VLTAGIAEVAAGAISMGLGGYL 78 (240)
Q Consensus 57 vl~aGla~~iAgalSMa~G~Yl 78 (240)
++.+-+++.+++.+.=.+|.++
T Consensus 75 ~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 75 VALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555554
No 74
>PRK14136 recX recombination regulator RecX; Provisional
Probab=38.50 E-value=37 Score=31.20 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCC----hhHHHHHH
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNALRKKP----QAWLEFMM 142 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~----~~~~~~m~ 142 (240)
..+.-+.||++.|+++|++++..+.+++.|.++. ..+.+.++
T Consensus 174 rReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyV 219 (309)
T PRK14136 174 RREYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLV 219 (309)
T ss_pred cccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 4455578999999999999999999999998743 44444444
No 75
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=38.23 E-value=49 Score=28.72 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.5
Q ss_pred HHhcCchHHHHHHHHHHHhCCCCh
Q 026351 97 EIITVPDTEAAEVAGILADYGIEP 120 (240)
Q Consensus 97 ei~~~p~~e~~el~~~~~~~Gl~~ 120 (240)
+.+++|++.++|+.+.|++.|+++
T Consensus 73 k~k~d~~~~~~e~~~Lyk~~~inp 96 (223)
T PRK00145 73 KYKNDPQKLQQEMMKLYKEKGVNP 96 (223)
T ss_pred HHHccHHHHHHHHHHHHHHhCCCc
Confidence 334567777788888888888875
No 76
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=37.61 E-value=55 Score=26.51 Aligned_cols=47 Identities=19% Similarity=0.070 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHHHHHHHHHhh
Q 026351 192 VAVTLVALLIFGYAKGYFTG---NKPVKSALQTAFIGAIASAAAFGMAKA 238 (240)
Q Consensus 192 ~~~~~~~L~~~G~~~a~~s~---~~~~~~~l~~l~~G~~aa~~~y~iG~l 238 (240)
.-+....|...|++....+. .+.+..+...+.+|.++++++|....+
T Consensus 43 ~~~lg~~L~~tG~~~~~~~~~~~~~~~~~g~~l~~iG~~tm~~srI~slI 92 (135)
T PF05628_consen 43 FDVLGGILILTGYIININANSKDDKMSITGSILMGIGGLTMAASRITSLI 92 (135)
T ss_pred HHHHhHHHHHhhheeecccccccccccchhHHHHHHhHHHHHHHHHHHhe
Confidence 34455566888888743222 345777888889999999999987654
No 77
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=36.75 E-value=1.2e+02 Score=26.63 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHH-HHHHH
Q 026351 185 TDAVLASVAVTLVA-LLIFG 203 (240)
Q Consensus 185 ~~a~~~s~~~~~~~-L~~~G 203 (240)
+.-++..+.+++++ +++||
T Consensus 53 ~~~~i~gi~~g~l~am~vl~ 72 (224)
T PF13829_consen 53 WYWLIIGILLGLLAAMIVLS 72 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333 44443
No 78
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=36.75 E-value=43 Score=26.97 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
+.-..+|++.|.++|+++++++.+.+.+..
T Consensus 25 ~~s~~el~~kL~~kg~~~~~i~~vl~~l~~ 54 (157)
T PRK00117 25 EHSRAELRRKLAAKGFSEEVIEAVLDRLKE 54 (157)
T ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 344578888899999999999999988876
No 79
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=36.50 E-value=4.8e+02 Score=26.60 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=38.7
Q ss_pred HHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 026351 168 VLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKAV 239 (240)
Q Consensus 168 ~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 239 (240)
++-|+.|.+-++|..+...+= +++.-+-++..+.+.-...+.-..+|++.+-.+++|++=..++|.+--.+
T Consensus 540 ~lLG~t~~iG~~~GLPLDIRH-VtfSsanlg~a~~~lg~~~l~~~~f~~a~~gV~lIG~~Nl~VSF~LAl~v 610 (643)
T PF10136_consen 540 FLLGMTPAIGYFFGLPLDIRH-VTFSSANLGYAAVSLGFDVLGWPAFWWALAGVLLIGFVNLIVSFSLALWV 610 (643)
T ss_pred HHHhhHHHHHHHcCCCcchhh-hhHhHhHHHHHHHhCChhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777764322111 11222222222222222212223468999999999999999999876544
No 80
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.31 E-value=1.9e+02 Score=22.02 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHhcCCCCCC
Q 026351 134 PQAWLEFMMKFELGLEKPD 152 (240)
Q Consensus 134 ~~~~~~~m~~~e~g~~~~~ 152 (240)
+...++.+.++++|+..++
T Consensus 63 ~~dyiEe~AR~~Lg~vk~g 81 (105)
T PRK00888 63 GQEAIEERARNELGMVKPG 81 (105)
T ss_pred cHHHHHHHHHHHcCCCCCC
Confidence 3467888889999987775
No 81
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.21 E-value=3.9e+02 Score=25.46 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=46.6
Q ss_pred hcHHHHHHHHhcCChhHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhH-hhhcccchhHHHHHHHHHHHHHH
Q 026351 121 HEYGPVVNALRKKPQAWLEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLI-PYMFIPRATDAVLASVAVTLVAL 199 (240)
Q Consensus 121 ~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPll-P~~~~~~~~~a~~~s~~~~~~~L 199 (240)
-....+..-++.+|| .++++.+-|+++++.++.|++.|+.-=. --++ .++..+.+..+..|
T Consensus 277 ~nLaAItAAic~gpd-------------aHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~-----~alP~~li~~lAGL 338 (402)
T COG3135 277 VNLAAITAAICTGPD-------------AHPDPARRYTAALVAGIFYLLAGLFGGALVGLM-----AALPASLIAALAGL 338 (402)
T ss_pred ecHHHHHHHHhcCCC-------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCcHHHHHHHHHH
Confidence 344456667777764 2456777899999999999988875322 1111 13334444444445
Q ss_pred HHHHHHHH----HHcCCchhHHHH
Q 026351 200 LIFGYAKG----YFTGNKPVKSAL 219 (240)
Q Consensus 200 ~~~G~~~a----~~s~~~~~~~~l 219 (240)
.++|-++. -++..++.-.++
T Consensus 339 ALlg~~~~~l~~A~~~~~~R~aAl 362 (402)
T COG3135 339 ALLGTLGNSLQAALKDEREREAAL 362 (402)
T ss_pred HHHHHHHHHHHHHhcCcccchhhh
Confidence 55555443 344455554433
No 82
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=36.14 E-value=96 Score=25.93 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHh-hhHh
Q 026351 158 HSALTIAIAYVLGGMV-PLIP 177 (240)
Q Consensus 158 ~~al~~~~sf~lg~li-PllP 177 (240)
|.|+.++++.++++++ |..|
T Consensus 58 KTAVlsGl~~l~~~~~~~~~~ 78 (165)
T PF14972_consen 58 KTAVLSGLASLITGLLWPDRP 78 (165)
T ss_pred HHHHHhhhHHHHhhhhccccc
Confidence 4666777766666655 5444
No 83
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=35.96 E-value=57 Score=23.31 Aligned_cols=34 Identities=12% Similarity=0.381 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChh
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKKPQA 136 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~ 136 (240)
..-..++.++.+..|++.++=..|......||+.
T Consensus 41 ~~a~~~~~~~I~~~GLtv~~fN~I~~~~q~Dp~L 74 (78)
T PF13767_consen 41 EEAQEEMVEAIEENGLTVERFNEITQAAQSDPEL 74 (78)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCHHH
Confidence 3345666778899999999999999999999863
No 84
>COG2056 Predicted permease [General function prediction only]
Probab=35.92 E-value=2.8e+02 Score=26.49 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHH
Q 026351 54 SSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARE 90 (240)
Q Consensus 54 ~~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e 90 (240)
+...++.+++-.+.-- .+-|+|=|-.||++.++
T Consensus 191 ~~am~ip~lgMi~GLl----~ai~~~YrKpReY~~~~ 223 (444)
T COG2056 191 PKAMWIPGLGMIVGLL----LAIFVSYRKPREYQTNE 223 (444)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhhcCCccccccc
Confidence 3455555555444322 23455556666665433
No 85
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=35.90 E-value=1.2e+02 Score=24.02 Aligned_cols=16 Identities=6% Similarity=0.164 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHcC
Q 026351 196 LVALLIFGYAKGYFTG 211 (240)
Q Consensus 196 ~~~L~~~G~~~a~~s~ 211 (240)
++.+++-|-+.+++-.
T Consensus 63 ~~~v~~gg~~l~rlKR 78 (121)
T PF11990_consen 63 ILGVFVGGKLLARLKR 78 (121)
T ss_pred HHHHHHhHHHHHHHHc
Confidence 3445666777787764
No 86
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=35.63 E-value=58 Score=27.15 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=12.7
Q ss_pred cCchHHHHHHHHHHHhCCCCh
Q 026351 100 TVPDTEAAEVAGILADYGIEP 120 (240)
Q Consensus 100 ~~p~~e~~el~~~~~~~Gl~~ 120 (240)
+++++-++|+.++|++.|+++
T Consensus 47 ~~~~~~~~e~~~l~k~~~~~p 67 (181)
T TIGR03592 47 DDPQKLQQEMMKLYKEEGVNP 67 (181)
T ss_pred hhHHHHHHHHHHHHHHhCCCc
Confidence 344444566677777766664
No 87
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=35.36 E-value=37 Score=21.13 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc
Q 026351 189 LASVAVTLVALLIFGYAKGYFTGNK 213 (240)
Q Consensus 189 ~~s~~~~~~~L~~~G~~~a~~s~~~ 213 (240)
..++++.++.||++|+...--++++
T Consensus 8 Vy~vV~ffv~LFifGflsnDp~RnP 32 (36)
T PF02532_consen 8 VYTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSSS
T ss_pred ehhhHHHHHHHHhccccCCCCCCCC
Confidence 4456677788999998766544433
No 88
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=35.28 E-value=1e+02 Score=23.65 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=22.2
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHH
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNA 129 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~ 129 (240)
.+...++-+...|..+|++.+++..+.+.
T Consensus 90 ~~~~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 90 SDRKRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp -CHHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 45666899999999999999998887765
No 89
>PHA00094 VI minor coat protein
Probab=34.97 E-value=1.4e+02 Score=23.33 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH
Q 026351 200 LIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAF 233 (240)
Q Consensus 200 ~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y 233 (240)
.++||+..++++.--+-.-+-++++|++.+..+.
T Consensus 20 ~~~gyfa~f~tk~iarn~liisl~igLil~~~~~ 53 (112)
T PHA00094 20 NLIGYFAKFFTRGIARNALAISLFIGLILGLNSA 53 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444433233333333444444333333
No 90
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=34.55 E-value=1.9e+02 Score=27.04 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhHh---h--hcccchhHHHHHHHHHHHHHHHHHH---HHHHHHcC-----CchhHHHHHHH
Q 026351 156 ALHSALTIAIAYVLGGMVPLIP---Y--MFIPRATDAVLASVAVTLVALLIFG---YAKGYFTG-----NKPVKSALQTA 222 (240)
Q Consensus 156 P~~~al~~~~sf~lg~liPllP---~--~~~~~~~~a~~~s~~~~~~~L~~~G---~~~a~~s~-----~~~~~~~l~~l 222 (240)
.+-.++..+++-.+|.++|.+- + ++..+....+...++++++-..+.| ..|.|-.+ .+..|.-+--+
T Consensus 100 SLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv 179 (344)
T PF06379_consen 100 SLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAV 179 (344)
T ss_pred HHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHH
Confidence 3567888889999999997662 1 2222233344555555555555554 44444322 23445555566
Q ss_pred HHHHHHHHHHHHH
Q 026351 223 FIGAIASAAAFGM 235 (240)
Q Consensus 223 ~~G~~aa~~~y~i 235 (240)
+-|++.+..+|++
T Consensus 180 ~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 180 LSGVMSACFNFGL 192 (344)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777764
No 91
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=34.12 E-value=3.2e+02 Score=23.92 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAK 206 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~ 206 (240)
...|+=-+....+..++...+.++||-+.+... ++.-.+..+++.+.+|.-+
T Consensus 211 ~~TPiP~~Y~~~~~~~l~~y~~~lPf~l~~~~~--~~~~~~~~l~~~~~~gl~~ 262 (293)
T PF01062_consen 211 KNTPIPFAYTQHLSRFLYIYLLLLPFGLVDSLG--WLTPPITFLVSFFFLGLEE 262 (293)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888899999998876433 2333344445555566544
No 92
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=33.75 E-value=78 Score=32.62 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=35.5
Q ss_pred eeehHHHHHHHH-HHHHHHHhc--CchHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 80 AKSEADHYAREL-KREQEEIIT--VPDTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 80 ~~se~d~~~~e~-~re~~ei~~--~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
+|+|||++.+|. +.-++|+-. +.+.|.+++++.+++.+++++--+.+-++|.+
T Consensus 223 eK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~k 278 (782)
T COG0466 223 EKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKK 278 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 356677766554 333455543 23466888899999999998877777777654
No 93
>PRK10457 hypothetical protein; Provisional
Probab=33.30 E-value=1.9e+02 Score=21.25 Aligned_cols=42 Identities=12% Similarity=0.418 Sum_probs=24.6
Q ss_pred HHHhHhhhHhhhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026351 168 VLGGMVPLIPYMFIPR-ATDAVLASVAVTLVALLIFGYAKGYF 209 (240)
Q Consensus 168 ~lg~liPllP~~~~~~-~~~a~~~s~~~~~~~L~~~G~~~a~~ 209 (240)
++|.+.-.+.=.+.|. ....++.++++.++--++-|+....+
T Consensus 8 iiG~iaG~lA~~i~pg~~~~G~~~tiilGiiGA~iGg~l~~~~ 50 (82)
T PRK10457 8 IFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFF 50 (82)
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566566653 23467777777777666666554434
No 94
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=32.60 E-value=3e+02 Score=23.12 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHhHhhhHhhhcc-cchhHHHHHH
Q 026351 154 RRALHSALTIAIAYVLGGMVPLIPYMFI-PRATDAVLAS 191 (240)
Q Consensus 154 ~~P~~~al~~~~sf~lg~liPllP~~~~-~~~~~a~~~s 191 (240)
...|..+=.+...|++-.++.++-..|+ +.....++.+
T Consensus 67 vRD~VDsR~~i~e~fmP~alv~lv~~~v~~~~~~~~~~~ 105 (170)
T PF11241_consen 67 VRDYVDSRRNIGEFFMPVALVLLVLSFVVPSPQVQLYVT 105 (170)
T ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3456666666666666666666655555 3343344443
No 95
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=32.55 E-value=1.5e+02 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHhCCCChhcHHHHHHHHh
Q 026351 102 PDTEAAEVAGILADYGIEPHEYGPVVNALR 131 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~ 131 (240)
.+.|-.++.++.+...+++++...+.+...
T Consensus 32 ~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 32 TEAENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345558889999999999988877776654
No 96
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=32.54 E-value=24 Score=28.65 Aligned_cols=45 Identities=9% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHhhhHhhh-cc-cc--hhHHHHHHHHHHHHHHHHHHHH
Q 026351 161 LTIAIAYVLGGMVPLIPYM-FI-PR--ATDAVLASVAVTLVALLIFGYA 205 (240)
Q Consensus 161 l~~~~sf~lg~liPllP~~-~~-~~--~~~a~~~s~~~~~~~L~~~G~~ 205 (240)
--...++++|-++|+++.+ +. .+ .....-.++++.++.=+.+|.+
T Consensus 90 ~dlL~G~liGff~g~~~~~~L~~~~~v~s~r~~~aI~~Gv~~N~~~g~~ 138 (140)
T PF13373_consen 90 DDLLWGLLIGFFFGLFSLFWLLREDGVFSKRQKMAIIAGVIINFSFGLV 138 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhcccccccceeEeeeeeehhhheeeee
Confidence 3456677888899999943 33 22 2334445555665555555544
No 97
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.99 E-value=96 Score=24.52 Aligned_cols=23 Identities=22% Similarity=0.162 Sum_probs=10.7
Q ss_pred HHHHHHhcCchHHHHHHHHHHHh
Q 026351 93 REQEEIITVPDTEAAEVAGILAD 115 (240)
Q Consensus 93 re~~ei~~~p~~e~~el~~~~~~ 115 (240)
+|..+.+..-+.-|++|.+.+..
T Consensus 32 ~eL~~~k~el~~yk~~V~~HF~~ 54 (128)
T PF06295_consen 32 QELEQAKQELEQYKQEVNDHFAQ 54 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445666665543
No 98
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=30.81 E-value=1.2e+02 Score=21.40 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=10.8
Q ss_pred hhhhccceeeeehHHHHH
Q 026351 71 SMGLGGYLAAKSEADHYA 88 (240)
Q Consensus 71 SMa~G~Yls~~se~d~~~ 88 (240)
.-++|-+++.++-++.++
T Consensus 12 Ga~~glL~aP~sG~e~R~ 29 (74)
T PF12732_consen 12 GAAAGLLFAPKSGKETRE 29 (74)
T ss_pred HHHHHHHhCCCCcHHHHH
Confidence 344555667777766653
No 99
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=30.67 E-value=3.9e+02 Score=27.35 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhHhhhHhhhcccchhH---HHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 026351 157 LHSALTIAIAYVLGGMVPLIPYMFIPRATD---AVLASVAVTLVALLIFGYAKGYFTGNK 213 (240)
Q Consensus 157 ~~~al~~~~sf~lg~liPllP~~~~~~~~~---a~~~s~~~~~~~L~~~G~~~a~~s~~~ 213 (240)
+...+...+.++++..+|.+.+++..-..+ ..+++.+++++.+.+.+.+.-+....+
T Consensus 305 k~~~~~i~l~~~l~~~~p~~~~i~~gf~~p~~~~~R~~fi~~f~~~~~~~~~l~~~~~~~ 364 (843)
T PF09586_consen 305 KLLFLLILLLLLLSFFIPPLNSIWNGFSYPNGFPYRWSFIFIFLISLLAARGLEELKKIS 364 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444445566777788887765421112 267888888888888888877665543
No 100
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.57 E-value=2.8e+02 Score=22.81 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=4.5
Q ss_pred HHHHHhhcc
Q 026351 26 VRDVIIGVS 34 (240)
Q Consensus 26 lr~~V~G~~ 34 (240)
+-.+|.|+.
T Consensus 9 i~~iilgil 17 (191)
T PF04156_consen 9 IILIILGIL 17 (191)
T ss_pred HHHHHHHHH
Confidence 334555555
No 101
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=30.44 E-value=1.1e+02 Score=20.00 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
.+++.+.+++.|+++++++.+.+.+-.+.
T Consensus 18 ~~el~~~l~~~g~~~~~~~~i~~~~d~~~ 46 (67)
T cd00052 18 GDEARPFLGKSGLPRSVLAQIWDLADTDK 46 (67)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCCC
Confidence 67888888888998888888887776554
No 102
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=30.29 E-value=61 Score=30.34 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.1
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
.+|+.++...++|.+.|+++++|+.+++.|..-
T Consensus 7 ~~e~L~~~~~~vl~~~G~~ee~A~~vA~~lv~a 39 (349)
T COG2055 7 SAEELKALIEEVLRKAGVPEEDARAVADVLVAA 39 (349)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455667888999999999999999999998753
No 103
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=30.20 E-value=2.3e+02 Score=21.01 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccee
Q 026351 55 SIVLTAGIAEVAAGAISMGLGGYLA 79 (240)
Q Consensus 55 ~~vl~aGla~~iAgalSMa~G~Yls 79 (240)
..++++.+++.+++.++-.+|.+..
T Consensus 18 ~~~~~~~~g~~~g~~~~y~lgr~~~ 42 (123)
T PF09335_consen 18 LGFLIATLGAVLGSLLAYLLGRYFG 42 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666667777776766666664
No 104
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=29.85 E-value=82 Score=26.29 Aligned_cols=21 Identities=14% Similarity=0.291 Sum_probs=14.0
Q ss_pred cCchHHHHHHHHHHHhCCCCh
Q 026351 100 TVPDTEAAEVAGILADYGIEP 120 (240)
Q Consensus 100 ~~p~~e~~el~~~~~~~Gl~~ 120 (240)
+++++.++|+.++|++.|+++
T Consensus 48 ~~~~~~~~~~~~l~k~~~~~p 68 (198)
T PF02096_consen 48 EDQQKMQQEMQKLYKKHGVNP 68 (198)
T ss_pred HHHHHHHHHHHHHHHHcCCCc
Confidence 344455777777777777775
No 105
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=29.43 E-value=1e+02 Score=31.67 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHhc--CchHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 95 QEEIIT--VPDTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 95 ~~ei~~--~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
++|+-. +.+.|.+++++.+++.+++++..+.+-+++.+
T Consensus 236 ~~eLg~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~ 275 (775)
T TIGR00763 236 KKELGIEKDDKDELEKLKEKLEELKLPEEVKKVIEKELTK 275 (775)
T ss_pred HHhhCCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 345533 34466788999999999998877777777663
No 106
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=28.56 E-value=17 Score=26.98 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhccceeeeehHHH
Q 026351 63 AEVAAGAISMGLGGYLAAKSEADH 86 (240)
Q Consensus 63 a~~iAgalSMa~G~Yls~~se~d~ 86 (240)
.+..+|+=|+.+|.|+.++.+++.
T Consensus 56 ~~~~sg~n~~~~G~ylt~~g~~~~ 79 (93)
T PF06968_consen 56 LTFMSGANSIMVGGYLTTSGNRSV 79 (93)
T ss_dssp HHHCCT--EEE-CSBTSSSCTSHH
T ss_pred HHHhcccceeEECCccccCCCCCH
Confidence 566778889999999888765444
No 107
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=28.04 E-value=3.8e+02 Score=24.58 Aligned_cols=15 Identities=13% Similarity=0.572 Sum_probs=8.2
Q ss_pred HHHhHhhhHhhhccc
Q 026351 168 VLGGMVPLIPYMFIP 182 (240)
Q Consensus 168 ~lg~liPllP~~~~~ 182 (240)
++||+.-++-+.+.|
T Consensus 107 ~vsGilsIlGLaLAP 121 (313)
T PF05461_consen 107 AVSGILSILGLALAP 121 (313)
T ss_pred HHhhHHHHHhHHhcc
Confidence 455555555555554
No 108
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=27.92 E-value=1.7e+02 Score=25.70 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHhhhHhhhccc
Q 026351 157 LHSALTIAIAYVLGGMVPLIPYMFIP 182 (240)
Q Consensus 157 ~~~al~~~~sf~lg~liPllP~~~~~ 182 (240)
+..++...++.+...+.||-|..+-.
T Consensus 112 ~l~~~~~~~~v~a~~lFPlWP~~~r~ 137 (224)
T PF03839_consen 112 YLIGALLLVGVIAICLFPLWPRWMRQ 137 (224)
T ss_pred HHHHHHHHHHHHHHHhhhcChHHHhh
Confidence 45556667777888888999987643
No 109
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.35 E-value=3.7e+02 Score=23.16 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026351 216 KSALQTAFIGAIASAAAFGMAK 237 (240)
Q Consensus 216 ~~~l~~l~~G~~aa~~~y~iG~ 237 (240)
+..+-.+++=+.+-..++.+++
T Consensus 69 klLLiIvFllLTaPVaSHaIAR 90 (197)
T PRK12585 69 RVLLAVLFIFLTTPVASHLINR 90 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555544
No 110
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=27.08 E-value=3.4e+02 Score=21.91 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQT 221 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~ 221 (240)
..+++++..-..++..+|.-+-.-..--..........+.+++++.-++.+++..|.++.++..+-+-.
T Consensus 44 ~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La~ 112 (156)
T TIGR03082 44 LPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAFLAT 112 (156)
T ss_pred CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 344555666666666666543332222222233445566677777788889999999997776655443
No 111
>PRK14137 recX recombination regulator RecX; Provisional
Probab=26.84 E-value=1.3e+02 Score=25.76 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 104 TEAAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 104 ~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
..++.+.+.|..+||+.+.+..+.+.+...+
T Consensus 153 ~~k~K~~~~L~rRGFs~~~I~~al~~~~~~~ 183 (195)
T PRK14137 153 DPRASAYAFLARRGFSGAVIWPAIREVAALA 183 (195)
T ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 4567789999999999999999999887654
No 112
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=26.73 E-value=78 Score=27.46 Aligned_cols=32 Identities=13% Similarity=0.326 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
+|++.|+-.+.++++.|++++.+++..+.+.+
T Consensus 72 ~~Ee~re~a~~ll~~eGv~e~vi~ka~e~i~k 103 (239)
T COG1424 72 CPEEARENAQKLLQEEGVTEQVINKAYEIIKK 103 (239)
T ss_pred CHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 68888999999999999999999999998876
No 113
>COG2733 Predicted membrane protein [Function unknown]
Probab=26.71 E-value=2.2e+02 Score=27.27 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 026351 192 VAVTLVALLIFGYAKGYFTGNKPVKSALQTA 222 (240)
Q Consensus 192 ~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l 222 (240)
++..++++++.||+.+++.+.++|-+.+...
T Consensus 13 iA~~lL~i~~~~f~l~~~~~nn~w~g~v~a~ 43 (415)
T COG2733 13 IATGLLLIAAGVFILCRFFENNAWVGFVGAI 43 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3455666777788888888877665444433
No 114
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=26.41 E-value=3e+02 Score=21.07 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 026351 200 LIFGYAK 206 (240)
Q Consensus 200 ~~~G~~~ 206 (240)
..+|...
T Consensus 60 ~~lG~WL 66 (100)
T TIGR02230 60 VAVGIWL 66 (100)
T ss_pred HHHHHHH
Confidence 3334444
No 115
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=26.31 E-value=65 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHh
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALR 131 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~ 131 (240)
.+++...+.+.|+++..+.++.+...
T Consensus 8 ~~~~~~~L~~~gl~~~~a~kl~~~yg 33 (94)
T PF14490_consen 8 LRELMAFLQEYGLSPKLAMKLYKKYG 33 (94)
T ss_dssp -HHHHHHHHHTT--HHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 45677788999999999988887644
No 116
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=26.30 E-value=3.7e+02 Score=22.14 Aligned_cols=36 Identities=36% Similarity=0.575 Sum_probs=20.7
Q ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhH--hhhccc
Q 026351 144 FELGLEKPDPRRALHSALTIAIAYVLGGMVPLI--PYMFIP 182 (240)
Q Consensus 144 ~e~g~~~~~~~~P~~~al~~~~sf~lg~liPll--P~~~~~ 182 (240)
.|+|++ +.+++++|+..-+..++|-++--+ +|+|..
T Consensus 65 VeiGi~---EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~ 102 (150)
T COG3086 65 VELGIE---EKSLLKSALLVYIFPLVGLFLGAILAQYLFFS 102 (150)
T ss_pred EEEccC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346663 457888987766665555444322 455544
No 117
>PRK14136 recX recombination regulator RecX; Provisional
Probab=25.92 E-value=1.3e+02 Score=27.83 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCChhcHHHHHHHH
Q 026351 104 TEAAEVAGILADYGIEPHEYGPVVNAL 130 (240)
Q Consensus 104 ~e~~el~~~~~~~Gl~~~~a~~i~~~L 130 (240)
.+++.+.+.|..+||+.+++..+.+..
T Consensus 276 kek~K~iRfL~rRGFS~D~I~~vLk~~ 302 (309)
T PRK14136 276 AERAKQARFLAARGFSSATIVKLLKVG 302 (309)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 456777899999999998887766543
No 118
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=25.88 E-value=2.4e+02 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 102 PDTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
-++||+.+.+.+.+.|.++++-+.+.++|.+
T Consensus 97 D~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~ 127 (188)
T PF04391_consen 97 DEEERQRIEGALQELGLDAEERAWLQAELAA 127 (188)
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 4567888888888888887777777777764
No 119
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=25.86 E-value=2.8e+02 Score=20.67 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=8.6
Q ss_pred hcHHHHHHHHhcCC
Q 026351 121 HEYGPVVNALRKKP 134 (240)
Q Consensus 121 ~~a~~i~~~L~~~~ 134 (240)
-....+.+.|+++.
T Consensus 69 ~sr~~V~d~L~q~g 82 (87)
T PF10883_consen 69 LSRDSVIDQLQQHG 82 (87)
T ss_pred CCHHHHHHHHHHcC
Confidence 34456777777664
No 120
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=25.82 E-value=2e+02 Score=23.84 Aligned_cols=53 Identities=2% Similarity=0.057 Sum_probs=36.7
Q ss_pred ehHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 82 SEADHYARELKREQEEIITVPDTEAAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 82 se~d~~~~e~~re~~ei~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
.+++..+.-..+.+++.......+++++.++...-++++..++..++......
T Consensus 61 ~Qrqqi~~i~~~~~~a~~~~~~~~r~~l~~li~a~~~D~aka~a~~~~m~~~~ 113 (160)
T COG3678 61 AQRQQIRDLMQAQRRAQREQLRSKRRALHELIAADQFDEAKARAQAEKMENQR 113 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHH
Confidence 34444444444455555556667789999999999999888888887766544
No 121
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=25.61 E-value=74 Score=29.48 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
++-++-+.++|++.|+++++|+.+++.|...
T Consensus 6 ~~l~~~~~~il~~~G~~~~~A~~vA~~Lv~A 36 (335)
T PF02615_consen 6 EELKAFVTDILQAAGVSEEDAEIVADVLVEA 36 (335)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3446778899999999999999999998753
No 122
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=25.60 E-value=3.3e+02 Score=22.98 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=5.1
Q ss_pred HhhhHhhhcc
Q 026351 172 MVPLIPYMFI 181 (240)
Q Consensus 172 liPllP~~~~ 181 (240)
+.|++-|+..
T Consensus 7 ~~Pli~Ff~~ 16 (178)
T TIGR00997 7 LLPLIVFFAT 16 (178)
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 123
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.59 E-value=4.8e+02 Score=23.21 Aligned_cols=53 Identities=15% Similarity=0.005 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCch-hHHHHHHHHHHHHHHHHHHHHHh
Q 026351 185 TDAVLASVAVTLVALLIFGYAKGYFTGNKP-VKSALQTAFIGAIASAAAFGMAK 237 (240)
Q Consensus 185 ~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~-~~~~l~~l~~G~~aa~~~y~iG~ 237 (240)
..++..+++++++.+.+=-++.+...+..+ ++.-...+.=.++|.++++.+..
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvliaivIs~ 99 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIAIVISE 99 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666665555444 23322322223445555555444
No 124
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=25.55 E-value=4.6e+02 Score=22.95 Aligned_cols=26 Identities=8% Similarity=0.276 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh
Q 026351 213 KPVKSALQTAFIGAIASAAAFGMAKA 238 (240)
Q Consensus 213 ~~~~~~l~~l~~G~~aa~~~y~iG~l 238 (240)
+..+..=.....|.+.+.+++.+|.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (279)
T PRK12884 253 ETIRKVRKITLTAMLLALVAFALGAI 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555556677778888888888764
No 125
>PRK13421 F0F1 ATP synthase subunit A; Provisional
Probab=25.50 E-value=4.4e+02 Score=22.88 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccchhHHH
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPRATDAV 188 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~~a~ 188 (240)
+..|+...+..++ ++.-+.-++|+++.+..+..+
T Consensus 76 ~~~p~i~tlF~fI--l~~Nl~GliP~~~~pTs~l~~ 109 (223)
T PRK13421 76 PYRALIGTLFLFV--LVANWSSLVPGVEPPTAHLET 109 (223)
T ss_pred chHHHHHHHHHHH--HHHHHHhCcCCCCCCCccHHH
Confidence 4567775544444 566677788898876544333
No 126
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=25.41 E-value=1.5e+02 Score=23.14 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPR---ATDAVLASVAVTLVALLIFGYAKGYF 209 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~---~~~a~~~s~~~~~~~L~~~G~~~a~~ 209 (240)
...|||.=+..++-+++|.+.-++..++.-+ ....=.+.+.+..+.+|+=|++-.++
T Consensus 37 ~k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i 96 (115)
T PF05915_consen 37 VKIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRI 96 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHH
Confidence 3557999988899899998888888664321 11122234555556667777776554
No 127
>PF14476 Chloroplast_duf: Petal formation-expressed
Probab=25.36 E-value=5.3e+02 Score=23.62 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=50.7
Q ss_pred ccchhHHHHHhhccchhHHHHHHHHhhhccCCchHHHHHH--HHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHH
Q 026351 21 TAGEIVRDVIIGVSDGLTVPFALAAGLSGANATSSIVLTA--GIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEI 98 (240)
Q Consensus 21 ~~~~~lr~~V~G~~DGlv~~~glv~G~~~a~~~~~~vl~a--Gla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei 98 (240)
...+...-..++....++.+-++.+|++++...+..-+-. ++--..|.++.+.+--.- -||.--+++.-.|..+++
T Consensus 21 ~QRdNWN~LLl~Sin~itLtAa~Magla~~~~~~~~AlklSstlL~~aAtg~l~~mNkiQ--PSQLAEEQRNAtRLfkqL 98 (313)
T PF14476_consen 21 EQRDNWNHLLLNSINMITLTAATMAGLAGGSGAPLLALKLSSTLLFSAATGMLAIMNKIQ--PSQLAEEQRNATRLFKQL 98 (313)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHH
Confidence 3445555677888888888889999999544344433333 332333333333222221 233333333333344443
Q ss_pred hcCchHHHHHHHHHHHhCCCChhcHHHHHHHHh
Q 026351 99 ITVPDTEAAEVAGILADYGIEPHEYGPVVNALR 131 (240)
Q Consensus 99 ~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~ 131 (240)
+ .+++..+.-...++.+.++..++..
T Consensus 99 ~-------~~I~t~la~~~~t~~dv~~amekVL 124 (313)
T PF14476_consen 99 H-------SQIETTLALGNPTEEDVKDAMEKVL 124 (313)
T ss_pred H-------HHHHHHHhcCCccHhHHHHHHHHHH
Confidence 3 2333344444445566666555543
No 128
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=25.31 E-value=1.1e+02 Score=19.59 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCChhcHHHHHHHH
Q 026351 104 TEAAEVAGILADYGIEPHEYGPVVNAL 130 (240)
Q Consensus 104 ~e~~el~~~~~~~Gl~~~~a~~i~~~L 130 (240)
..|++|.+...++|++.++.-.+.++|
T Consensus 8 ~~R~~L~~~~~~~~l~~~~vl~~Sq~L 34 (45)
T PF09388_consen 8 ELRQELNELAEKKGLTDPEVLELSQEL 34 (45)
T ss_dssp HHHHHHHHHHHHCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 346788888888899988776666665
No 129
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=25.28 E-value=84 Score=18.95 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=12.6
Q ss_pred HHHHHHhCCCChhcHHHHHHH
Q 026351 109 VAGILADYGIEPHEYGPVVNA 129 (240)
Q Consensus 109 l~~~~~~~Gl~~~~a~~i~~~ 129 (240)
..+.+.+.||+++.+++....
T Consensus 5 ~v~~L~~mGf~~~~~~~AL~~ 25 (37)
T PF00627_consen 5 KVQQLMEMGFSREQAREALRA 25 (37)
T ss_dssp HHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 344566679999877655443
No 130
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.05 E-value=3.3e+02 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=6.4
Q ss_pred HHHHHHHHcCCchh
Q 026351 202 FGYAKGYFTGNKPV 215 (240)
Q Consensus 202 ~G~~~a~~s~~~~~ 215 (240)
+|++.=++.+.++|
T Consensus 62 iG~llD~~agTsPw 75 (116)
T COG5336 62 IGWLLDKFAGTSPW 75 (116)
T ss_pred HHHHHHHhcCCCcH
Confidence 44444444444433
No 131
>PRK14135 recX recombination regulator RecX; Provisional
Probab=24.73 E-value=1.9e+02 Score=25.18 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 107 AEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 107 ~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
.+|++.|.++|++++.++.+.+.+..
T Consensus 75 ~el~~kL~~kg~~~~~Ie~vl~~l~~ 100 (263)
T PRK14135 75 KEVRDYLKKHEISEEIISEVIDKLKE 100 (263)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 55666666666666666666666653
No 132
>PF13962 PGG: Domain of unknown function
Probab=24.48 E-value=2.5e+02 Score=21.28 Aligned_cols=52 Identities=19% Similarity=0.091 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 026351 185 TDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKA 238 (240)
Q Consensus 185 ~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l 238 (240)
..++..|+.+.++.+ . +.-.-+-......+-+...+.+.+.++.++|..|..
T Consensus 60 t~af~~S~~~i~~l~-~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~ 111 (113)
T PF13962_consen 60 TIAFFSSLAAIFLLI-S-GLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIY 111 (113)
T ss_pred HHHHHHHHHHHHHHH-H-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666655555 2 441111111224567777788888899999988753
No 133
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=24.44 E-value=92 Score=26.19 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
+.-++||++.|.+++++++..+.+.+.+.++.
T Consensus 34 ~rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~ 65 (174)
T COG2137 34 DRSEKELRRKLAKKEFSEEIIEEVIDRLAEEG 65 (174)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Confidence 33457888889999999999999998888643
No 134
>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]
Probab=24.44 E-value=5.7e+02 Score=23.70 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 026351 200 LIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMAKA 238 (240)
Q Consensus 200 ~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG~l 238 (240)
+-.|+|-.-+++ |.|.---++.+-.+...++++||.+
T Consensus 253 fM~~AYgWAF~~--P~RKiyYNiTiTaiSV~iA~~IG~i 289 (342)
T COG3376 253 FMNGAYGWAFSS--PLRKIYYNITITAISVLIALFIGGI 289 (342)
T ss_pred HHhhhhhhhhcC--hhhhHhhheeHHHHHHHHHHHHhHH
Confidence 344555444544 7777777778888888888888854
No 135
>PRK14134 recX recombination regulator RecX; Provisional
Probab=24.24 E-value=2.1e+02 Score=25.80 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
..||++.|.++|++++..+.+++.|...
T Consensus 78 e~Elr~KL~~k~~~~~~Ie~vI~~L~e~ 105 (283)
T PRK14134 78 EKQIKEKLYLKEYDEDAVNRVIRFLKEY 105 (283)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4677788888888888888888888753
No 136
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.06 E-value=1.6e+02 Score=23.45 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=21.4
Q ss_pred HhcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 98 IITVPDTEAAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 98 i~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
+.+.|.++ -+++|+.||+++++.++..++....+
T Consensus 18 V~~sp~~~---k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 18 VRNSPLEK---KIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp CCCS-HHH---HHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred cccCCHHH---HHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 34455433 35689999999999999888877654
No 137
>PRK11469 hypothetical protein; Provisional
Probab=23.97 E-value=4.4e+02 Score=22.18 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026351 158 HSALTIAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLIFGYAKGYFTGN 212 (240)
Q Consensus 158 ~~al~~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~ 212 (240)
.+|+..++++.+-+..|+.+.+. +.++...+..+|.+.+|..++
T Consensus 117 iDAlavGi~~~~~g~~~~~~~~~-----------ig~~s~~~~~~G~~lG~~~g~ 160 (188)
T PRK11469 117 LDAMAVGVGLAFLQVNIIATALA-----------IGCATLIMSTLGMMVGRFIGS 160 (188)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 46677777776666654444332 334445556667777765453
No 138
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=23.96 E-value=1.2e+02 Score=28.15 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHh-CCCChhcHHHHHHHHh
Q 026351 89 RELKREQEEIITVPDTEAAEVAGILAD-YGIEPHEYGPVVNALR 131 (240)
Q Consensus 89 ~e~~re~~ei~~~p~~e~~el~~~~~~-~Gl~~~~a~~i~~~L~ 131 (240)
.++.+++.+++.....++..+.+-|.. .+++++..++-.+.+.
T Consensus 82 ~~r~~~~~~i~~~~~~q~~~l~~~~~~~~~~s~~~y~~~~~~l~ 125 (332)
T TIGR01541 82 RERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIK 125 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHHHHH
Confidence 344556666666667777777777765 4666665555444444
No 139
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=23.95 E-value=2.7e+02 Score=23.67 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcC-c-hHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCCCCCh-hhHHHHHHH
Q 026351 89 RELKREQEEIITV-P-DTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLEKPDP-RRALHSALT 162 (240)
Q Consensus 89 ~e~~re~~ei~~~-p-~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~~~~~-~~P~~~al~ 162 (240)
.|+++...++++. . +++++-|.+.+. .|-+...++... ++|+.-.+....-.+-+++.++ ++.|...|.
T Consensus 99 ~Er~~I~~~l~~~g~d~e~~~~l~~eL~----~P~d~~~la~~v-~~~e~A~evY~aS~laid~d~~~Er~YL~~LA 170 (188)
T PF04391_consen 99 EERQRIEGALQELGLDAEERAWLQAELA----APLDPDALAAAV-TDPEQAAEVYLASLLAIDVDTFAERAYLDELA 170 (188)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHh----CCCCHHHHHHhC-CCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3555555555542 2 333444444444 345555666666 6666666655555555544432 333444433
No 140
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=23.90 E-value=3.4e+02 Score=20.88 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 026351 200 LIFGYAKGYFTGNKPVKSALQTAFIGAIASAAA 232 (240)
Q Consensus 200 ~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~ 232 (240)
++..+.+.++.|+++.|..++-+.=|.++-.+.
T Consensus 31 ~~mA~LR~~Y~g~~~~~~llea~mCg~la~~~~ 63 (107)
T TIGR01594 31 LAIAYLRIRYMGGKFKRKLIDALMCAAIALVAA 63 (107)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777777777776664443
No 141
>MTH00174 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=23.63 E-value=4.4e+02 Score=23.36 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccchhHH
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPRATDA 187 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~~a 187 (240)
+..|+...+..++ ++.-++-++||.+.+..+..
T Consensus 89 ~~~p~i~tlF~fI--l~~NllGLiP~~fspTs~l~ 121 (252)
T MTH00174 89 NYLAFVLSLFILI--LFGNGLGLFPYVFTPTVHMV 121 (252)
T ss_pred chHHHHHHHHHHH--HHHHHHHccCCCCCCccCHH
Confidence 4567776555544 56778889999887654433
No 142
>COG0356 AtpB F0F1-type ATP synthase, subunit a [Energy production and conversion]
Probab=23.34 E-value=3.9e+02 Score=23.75 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhHhhhHh--hhcccchhHHHHHHHHH
Q 026351 138 LEFMMKFELGLEKPDPRRALHSALTIAIAYVLGGMVPLIP--YMFIPRATDAVLASVAV 194 (240)
Q Consensus 138 ~~~m~~~e~g~~~~~~~~P~~~al~~~~sf~lg~liPllP--~~~~~~~~~a~~~s~~~ 194 (240)
++-+.++..|- +..+--|+.-. .|+.-++.-++|+.| ++..|......-.+..+
T Consensus 73 v~~~~~~~ig~-~~~~~~Pl~~T--LF~fIfi~Nll~l~~~~~~~~pTadi~~tl~LAl 128 (246)
T COG0356 73 VRGMVKDNIGG-KGKKFAPLALT--LFLFIFIANLLGLDPLGLFESPTADINVTLALAL 128 (246)
T ss_pred HHHHHHHhcCc-cccchHHHHHH--HHHHHHHHHcccCCccccccCCCcchhHHHHHHH
Confidence 44444444543 22334455444 444446777999999 77776544443333333
No 143
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=23.06 E-value=4.4e+02 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhHhhhHhhhccc
Q 026351 157 LHSALTIAIAYVLGGMVPLIPYMFIP 182 (240)
Q Consensus 157 ~~~al~~~~sf~lg~liPllP~~~~~ 182 (240)
++.++..-+...+..+++++|.++..
T Consensus 128 ~~~tl~r~i~t~~ttll~~~~L~~~g 153 (189)
T PF02355_consen 128 IKQTLSRTIDTSLTTLLAALILFFFG 153 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445533434455667777766554
No 144
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=22.97 E-value=4.3e+02 Score=21.71 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026351 222 AFIGAIASAAAFGMAKA 238 (240)
Q Consensus 222 l~~G~~aa~~~y~iG~l 238 (240)
++.|++++.++|.+.+.
T Consensus 114 ~l~Gli~~~~~Y~ls~~ 130 (154)
T TIGR03546 114 FVVGLILLPPAFAISKV 130 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888888764
No 145
>PRK14134 recX recombination regulator RecX; Provisional
Probab=22.88 E-value=1.8e+02 Score=26.11 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 104 TEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 104 ~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
..++.+...|.++|++.++..++.+++..+
T Consensus 253 k~~~Kl~~~L~rkGf~~e~I~~vl~~~~~~ 282 (283)
T PRK14134 253 KIYRRLSNYLLRRGYSWEEVKKSLNELLYE 282 (283)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 457999999999999999999999888654
No 146
>PF11181 YflT: Heat induced stress protein YflT
Probab=22.88 E-value=1e+02 Score=23.17 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 107 AEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 107 ~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
.++++.+.+.|+++++|++..++|.+-
T Consensus 71 d~~~~~l~~lGl~~~ea~~y~~~l~~G 97 (103)
T PF11181_consen 71 DELRSKLESLGLSEDEAERYEEELDQG 97 (103)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 356778899999999999998888653
No 147
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.75 E-value=1.3e+02 Score=28.44 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHHHhcCCC
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMKFELGLE 149 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~~e~g~~ 149 (240)
..++++..+-+.+.|+.+++.+...+--+.||++.++.++ .||.
T Consensus 153 g~~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~---tGIP 196 (378)
T TIGR00601 153 GSERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLL---TGIP 196 (378)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHH---hCCC
Confidence 4467788888999999999999999999999999999776 4564
No 148
>PRK14135 recX recombination regulator RecX; Provisional
Probab=22.75 E-value=2.5e+02 Score=24.50 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=24.4
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHHH
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNAL 130 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L 130 (240)
.|...++-+...|..+||+.++...+.+.+
T Consensus 230 ~~~k~k~K~~~~L~rrGF~~~~I~~~l~~~ 259 (263)
T PRK14135 230 DGYELKQKLKQALYRKGFSYDDIDSFLREY 259 (263)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 355668899999999999999887777665
No 149
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=22.73 E-value=7e+02 Score=24.11 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 026351 194 VTLVALLIFGYAKGYFTGNKPVKSALQTAFI 224 (240)
Q Consensus 194 ~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~ 224 (240)
.+.+.+++.+.=-.++.+.+.+++|++-++.
T Consensus 279 ~a~~i~l~~k~~~~~i~~~~vF~sGm~a~v~ 309 (443)
T PRK12489 279 TGALILILTKTDPASISNGEVFKSGMIAIVA 309 (443)
T ss_pred HHHHHHHHcCCCHHHhccchhhHHHHHHHHH
Confidence 3344455555555666667778888876543
No 150
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.72 E-value=3e+02 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 105 EAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 105 e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
.+..+.+.|.+.|++++.++++.+.+..+
T Consensus 293 ~~~~l~~~L~~~Gvs~~la~~L~~~l~~~ 321 (559)
T PRK12727 293 VRAQALELMDDYGFDAGLTRDVAMQIPAD 321 (559)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence 36677789999999999999999988653
No 151
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.40 E-value=3.3e+02 Score=21.64 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccchh
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPRAT 185 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~ 185 (240)
..+.++.++--..+.++|+++-++-+.+.++..
T Consensus 44 ~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~ 76 (141)
T PF06081_consen 44 VYRSLKQGLNRILGTLIGALLALLFFLILGYNP 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 556688888888888999988888776655333
No 152
>PRK05415 hypothetical protein; Provisional
Probab=22.40 E-value=6.5e+02 Score=23.55 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=9.6
Q ss_pred CchHHHHHHHHHHHhCCC
Q 026351 101 VPDTEAAEVAGILADYGI 118 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl 118 (240)
+..+.+.-..++-+..+.
T Consensus 146 ~~~~a~~~~~~l~~~~~~ 163 (341)
T PRK05415 146 DVGEARAFCEKLAKQAGI 163 (341)
T ss_pred ChhhHHHHHHHHHHHhCC
Confidence 344445555555555555
No 153
>KOG4544 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=3.6e+02 Score=21.93 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=7.5
Q ss_pred HhHhhhHhhhcc
Q 026351 170 GGMVPLIPYMFI 181 (240)
Q Consensus 170 g~liPllP~~~~ 181 (240)
-.++|++|..|+
T Consensus 78 ~~liPIvPL~f~ 89 (144)
T KOG4544|consen 78 LHLIPIVPLAFF 89 (144)
T ss_pred chheechhhHhh
Confidence 356777776543
No 154
>PRK15050 2-aminoethylphosphonate transport system permease PhnU; Provisional
Probab=22.25 E-value=4e+02 Score=23.46 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhHh
Q 026351 156 ALHSALTIAIAYVLGGMVPLIP 177 (240)
Q Consensus 156 P~~~al~~~~sf~lg~liPllP 177 (240)
||.--....+.+++.-+.|++-
T Consensus 24 ~~~~~~~~~~~~~~~~~~Pl~~ 45 (296)
T PRK15050 24 PLLWLLLPLLVLAPLVVYPLVR 45 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333344455555554
No 155
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=22.05 E-value=5.2e+02 Score=26.59 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhc------ccchhHHHHHHHHHHHHHHHHHHHHHHHHcC--CchhHHHHHH
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMF------IPRATDAVLASVAVTLVALLIFGYAKGYFTG--NKPVKSALQT 221 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~------~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~--~~~~~~~l~~ 221 (240)
+.++++.+++......+.++.++.-+++ .+..++.++++.++.+++=.++|++.-++|. .++.|...+.
T Consensus 288 ~~~aL~~g~~vs~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~a 364 (682)
T PF03030_consen 288 PMKALRRGYIVSSILSIILFFFLTYWLLGFSFFGSGISWWGLFGCVLIGLVAGVLIGFITEYYTSYSYRPVREIAEA 364 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 4556666666554444444444444444 1235678889999999998899998888887 4566665444
No 156
>PF15461 BCD: Beta-carotene 15,15'-dioxygenase
Probab=22.02 E-value=5.5e+02 Score=22.64 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=13.0
Q ss_pred HHHHHHhHhhhHhhhccc
Q 026351 165 IAYVLGGMVPLIPYMFIP 182 (240)
Q Consensus 165 ~sf~lg~liPllP~~~~~ 182 (240)
..+.-|+++|++|.++.+
T Consensus 88 ~~l~~Gg~v~~~~~~~h~ 105 (259)
T PF15461_consen 88 AYLARGGLVIMLPPLFHP 105 (259)
T ss_pred HHHHHhhHHHhHHHHhCc
Confidence 335678888999887653
No 157
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=22.00 E-value=3.3e+02 Score=20.43 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=24.1
Q ss_pred cCchHHHHHHHHH---HHhCCCChhcHHHHHHHHhcC
Q 026351 100 TVPDTEAAEVAGI---LADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 100 ~~p~~e~~el~~~---~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
.+|+.|.+.+... ..+.|++++.++.+-+.+.+.
T Consensus 51 ~d~~RE~~vl~~~~~~~~~~~l~~~~i~~~f~~i~~~ 87 (101)
T COG1605 51 YDPEREEQVLERLRAEAEKGGLDPELIERLFREIMEA 87 (101)
T ss_pred CChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4677777655444 556688998888887777654
No 158
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.88 E-value=2.1e+02 Score=23.91 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=18.0
Q ss_pred HHHHHHHHhHhhhHhhhcccchhHHHHHHHHHHHHHHHH
Q 026351 163 IAIAYVLGGMVPLIPYMFIPRATDAVLASVAVTLVALLI 201 (240)
Q Consensus 163 ~~~sf~lg~liPllP~~~~~~~~~a~~~s~~~~~~~L~~ 201 (240)
.+++..++.++-+++|+..+ ..+++|+++++++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~l~~~~~~~~ 46 (199)
T PF10112_consen 11 WILGVLIAAITFLVSFFGFD---HSFLLSLLIGAVAFAV 46 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 34444555555555555433 2344456555555444
No 159
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=21.77 E-value=63 Score=34.14 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=20.0
Q ss_pred ccceeeeehHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 026351 75 GGYLAAKSEADHYARELKREQEEIITVPDTEAAEVAGILADY 116 (240)
Q Consensus 75 G~Yls~~se~d~~~~e~~re~~ei~~~p~~e~~el~~~~~~~ 116 (240)
|-|-+..+.+|++.+||+..+||+++ +||++.++..
T Consensus 710 ~ly~~~~~~rErelrERE~Rere~re------ReLrdRlK~g 745 (982)
T PF03154_consen 710 GLYSADPAARERELREREIRERELRE------RELRDRLKPG 745 (982)
T ss_pred hhcccCHHhhhhhhhhhhhhhHHHHH------HHHHHhhccc
Confidence 34666666555555554444445433 6677776543
No 160
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=21.69 E-value=1.1e+02 Score=28.64 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
++-++.+.++|++.|+++++|+.+++.|...
T Consensus 6 ~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~A 36 (349)
T PRK15025 6 ETLHQLIKNKLCKAGLKREHAATVAEVLVYA 36 (349)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3446778899999999999999999998753
No 161
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=21.34 E-value=5e+02 Score=23.02 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 102 PDTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
.+.+.+++.+.|.+.|++++.++++.+.+..
T Consensus 132 ~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~ 162 (282)
T TIGR03499 132 RDPEGAKLLERLLRAGVSPELARELLEKLPE 162 (282)
T ss_pred cCHHHHHHHHHHHHCCCCHHHHHHHHHHhhc
Confidence 3446788999999999999999999999875
No 162
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=21.25 E-value=9e+02 Score=24.93 Aligned_cols=18 Identities=6% Similarity=0.109 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHcCCchh
Q 026351 198 ALLIFGYAKGYFTGNKPV 215 (240)
Q Consensus 198 ~L~~~G~~~a~~s~~~~~ 215 (240)
.-++.|++.-|+.+++..
T Consensus 218 G~li~G~LsDR~GRR~~l 235 (742)
T TIGR01299 218 GAFFWGGLADKLGRKQCL 235 (742)
T ss_pred HHHHHHHHHHHhCcHHHH
Confidence 344455566666444433
No 163
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.24 E-value=1.4e+02 Score=20.64 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=13.5
Q ss_pred HHhcCChhHHHHHHHHhcCCCCCC
Q 026351 129 ALRKKPQAWLEFMMKFELGLEKPD 152 (240)
Q Consensus 129 ~L~~~~~~~~~~m~~~e~g~~~~~ 152 (240)
.+.++|+ .+...-++++|+..|+
T Consensus 49 ~l~~~~~-~ie~~AR~~lgm~~~~ 71 (80)
T PF04977_consen 49 RLKNDPD-YIEKVAREKLGMVKPG 71 (80)
T ss_pred HhcCCHH-HHHHHHHHHcCCcCCC
Confidence 3434443 3455667778887665
No 164
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=21.10 E-value=1.1e+02 Score=28.23 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
++-++-..++|++.|+++++|+.+++.|...
T Consensus 6 ~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~a 36 (332)
T PRK13260 6 EELKAAFKRVLLSRGVDEETADACAEMFART 36 (332)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3446777889999999999999999998753
No 165
>PRK13420 F0F1 ATP synthase subunit A; Provisional
Probab=21.06 E-value=5.6e+02 Score=22.30 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhHhhhcccchhHHHHHHH
Q 026351 153 PRRALHSALTIAIAYVLGGMVPLIPYMFIPRATDAVLASV 192 (240)
Q Consensus 153 ~~~P~~~al~~~~sf~lg~liPllP~~~~~~~~~a~~~s~ 192 (240)
+..|+...+..++ ++.-+.-++||++.+..+..+-.+.
T Consensus 73 ~~~p~i~tlF~fI--l~~NllGLiP~~~spTs~ls~Tl~L 110 (226)
T PRK13420 73 LVLPFVGTLWIFI--LVANLIGLIPGFHSPTADLSVTAAL 110 (226)
T ss_pred chHHHHHHHHHHH--HHHHHHHhcCCCCCCCccHHHHHHH
Confidence 4557766555444 5566666888988765544444443
No 166
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=21.02 E-value=1.1e+02 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
++-++.+.++|++.|+++++|+.+++.|...
T Consensus 6 ~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~A 36 (349)
T TIGR03175 6 ETLHQLIKQKLYKAGLKREHAAIVADVLTFA 36 (349)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4446778899999999999999999998753
No 167
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=20.86 E-value=1.6e+02 Score=17.41 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=14.9
Q ss_pred HHHHHHhCCCChhcHHHHHHHHh
Q 026351 109 VAGILADYGIEPHEYGPVVNALR 131 (240)
Q Consensus 109 l~~~~~~~Gl~~~~a~~i~~~L~ 131 (240)
..+.+...|++++.+....+.-.
T Consensus 4 ~v~~L~~mGf~~~~a~~aL~~~~ 26 (37)
T smart00165 4 KIDQLLEMGFSREEALKALRAAN 26 (37)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34557778999886655544443
No 168
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=20.79 E-value=5.9e+02 Score=22.46 Aligned_cols=16 Identities=6% Similarity=0.056 Sum_probs=8.1
Q ss_pred hHHHHHhhccchhHHH
Q 026351 25 IVRDVIIGVSDGLTVP 40 (240)
Q Consensus 25 ~lr~~V~G~~DGlv~~ 40 (240)
..-+...|..+.+++.
T Consensus 142 ~~~~l~~~~~~~~~~l 157 (281)
T PF06472_consen 142 SSLSLFLGLLKPILDL 157 (281)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555433
No 169
>PF07130 YebG: YebG protein; InterPro: IPR009813 This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS [].; PDB: 3ERM_E.
Probab=20.65 E-value=2e+02 Score=20.98 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=23.7
Q ss_pred HHHHHHHHhC--CCChhcHHHHHHHHhcCChhHHHH
Q 026351 107 AEVAGILADY--GIEPHEYGPVVNALRKKPQAWLEF 140 (240)
Q Consensus 107 ~el~~~~~~~--Gl~~~~a~~i~~~L~~~~~~~~~~ 140 (240)
..|.+++++. |+++++++.+.=.|.+|++.+.+.
T Consensus 36 d~L~~~L~~~~~~lde~~~E~l~l~LA~~kd~~~~~ 71 (75)
T PF07130_consen 36 DNLTDFLEQSVLGLDEAQAEELALYLAENKDELAKA 71 (75)
T ss_dssp HHHHHHHHHHSTT--HHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCHHHHHHH
Confidence 4556666554 788899999999999988766543
No 170
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=20.27 E-value=3.5e+02 Score=19.66 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 026351 194 VTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIASAAAFGMA 236 (240)
Q Consensus 194 ~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~aa~~~y~iG 236 (240)
+..+++.+.|+... ..+.+ |+..+..++-+.+....+..+.
T Consensus 57 i~~i~ii~~g~~~~-~g~~~-~~~~~~~v~G~~iv~~A~~iv~ 97 (99)
T PF04956_consen 57 IAIIAIIVAGIMMM-FGRQS-WRWFIGVVIGIIIVFGAPSIVS 97 (99)
T ss_pred HHHHHHHHHHHHHH-hCCcC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444454332 43444 7666665555555555544443
No 171
>PF14163 SieB: Superinfection exclusion protein B
Probab=20.24 E-value=3.7e+02 Score=21.40 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 026351 55 SIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVPDTEAAEVAGILADY 116 (240)
Q Consensus 55 ~~vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p~~e~~el~~~~~~~ 116 (240)
..+++.+++-.++..++.....+.... ..++..++.++.+++--++|++-|++.+.+.
T Consensus 37 ~~~fl~s~s~li~~~~~~~~~~~~~~~----~~k~~~~~~~~~l~~Lt~~EkavL~~~~~~~ 94 (151)
T PF14163_consen 37 GLIFLFSVSYLIAQLLSFIYKEAKDRY----QRKRKKKKIEKKLNSLTPEEKAVLREFYIQG 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHCC
Confidence 356667777777777776633332211 1111222333446666667788888877665
No 172
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=20.19 E-value=6.3e+02 Score=22.59 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhHhhhHhhhccc
Q 026351 157 LHSALTIAIAYVLGGMVPLIPYMFIP 182 (240)
Q Consensus 157 ~~~al~~~~sf~lg~liPllP~~~~~ 182 (240)
|-....-+..+..|-..|.+|.++.+
T Consensus 8 ~~~~~~~~~~~~~g~~~p~l~~~l~~ 33 (382)
T PRK11128 8 WLALSYFGYFFAYGVFLPFWSVWLKG 33 (382)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 44444555555678899999987754
No 173
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=20.06 E-value=6e+02 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026351 216 KSALQTAFIGAIASAAAFGMA 236 (240)
Q Consensus 216 ~~~l~~l~~G~~aa~~~y~iG 236 (240)
+.+-+..-.....+.+++.+|
T Consensus 255 ~~~~~~f~~~~~~g~~~~~~~ 275 (276)
T PRK12882 255 TASQKLLKYGMFLALAAFIVG 275 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 445555555555666666655
No 174
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.04 E-value=1.6e+02 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHhCCCChhcHHHHHHHHhc--CChhHHH
Q 026351 102 PDTEAAEVAGILADYGIEPHEYGPVVNALRK--KPQAWLE 139 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~--~~~~~~~ 139 (240)
-+.||+.+.+.+++.|.+++....+-++|.+ ||+....
T Consensus 128 De~ERa~I~~~l~esG~d~e~~~~le~El~~PlD~~~ia~ 167 (225)
T COG2979 128 DEKERARIMQKLQESGVDPEAQAFLEQELEQPLDPDEIAA 167 (225)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 3566788888888888887766666666653 4454444
Done!