Query 026351
Match_columns 240
No_of_seqs 111 out of 1053
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 80.8 1.4 4.8E-05 31.3 3.4 42 57-102 21-62 (79)
2 3e3v_A Regulatory protein RECX 60.5 22 0.00077 28.4 6.6 34 102-135 135-168 (177)
3 3lay_A Zinc resistance-associa 46.4 27 0.00094 28.2 4.9 43 96-138 88-130 (175)
4 2x06_A L-sulfolactate dehydrog 46.0 16 0.00055 32.7 3.8 33 101-133 4-36 (344)
5 2g3q_A Protein YBL047C; endocy 43.6 35 0.0012 20.5 4.0 33 108-140 6-38 (43)
6 4dve_A Biotin transporter BIOY 42.6 95 0.0033 25.4 7.8 76 158-238 65-149 (198)
7 2knz_A Ubiquilin-4; cytoplasm, 42.5 55 0.0019 20.8 5.1 41 101-141 6-47 (53)
8 1ify_A HHR23A, UV excision rep 42.4 44 0.0015 20.9 4.5 36 107-142 9-44 (49)
9 3dfg_A Xcrecx, regulatory prot 41.7 22 0.00075 28.0 3.6 39 106-144 34-76 (162)
10 1z96_A DNA-damage, UBA-domain 38.5 32 0.0011 20.1 3.2 22 109-130 7-28 (40)
11 1ytz_T Troponin T; muscle, THI 38.4 18 0.00061 27.0 2.4 16 117-132 41-56 (107)
12 1c07_A Protein (epidermal grow 37.8 50 0.0017 22.8 4.7 45 90-134 11-57 (95)
13 1use_A VAsp, vasodilator-stimu 37.7 34 0.0012 21.5 3.2 35 82-116 7-42 (45)
14 1wj7_A Hypothetical protein (R 37.5 73 0.0025 23.6 5.6 52 90-141 23-75 (104)
15 3d5l_A Regulatory protein RECX 34.0 32 0.0011 28.4 3.6 43 102-144 74-120 (221)
16 3ff5_A PEX14P, peroxisomal bio 33.9 41 0.0014 21.9 3.3 28 98-128 25-52 (54)
17 1vg5_A RSGI RUH-014, rhomboid 32.0 35 0.0012 23.5 2.9 36 107-142 30-65 (73)
18 3d0w_A YFLH protein; GRAM-posi 31.9 20 0.00068 26.6 1.7 39 73-113 59-97 (104)
19 3rmg_A Octaprenyl-diphosphate 31.7 77 0.0026 27.9 5.9 39 96-134 244-282 (334)
20 1ixs_A Holliday junction DNA h 29.3 84 0.0029 20.7 4.4 26 106-131 17-42 (62)
21 2pmy_A RAS and EF-hand domain- 29.2 1.2E+02 0.0041 20.2 5.5 41 94-134 32-74 (91)
22 2w84_A Peroxisomal membrane pr 29.1 52 0.0018 22.6 3.3 32 98-132 30-61 (70)
23 3arc_I Photosystem II reaction 29.0 34 0.0012 20.7 2.0 26 188-213 7-32 (38)
24 2bwb_A Ubiquitin-like protein 28.4 75 0.0026 19.6 3.8 38 102-139 3-41 (46)
25 3e3v_A Regulatory protein RECX 28.3 23 0.00077 28.3 1.6 41 102-142 31-75 (177)
26 2c0s_A Conserved domain protei 27.6 47 0.0016 22.3 2.9 37 103-143 11-47 (64)
27 1wji_A Tudor domain containing 27.3 70 0.0024 21.2 3.7 36 108-143 11-46 (63)
28 3ayf_A Nitric oxide reductase; 26.1 4.9E+02 0.017 25.8 14.7 163 73-238 89-325 (800)
29 3mzv_A Decaprenyl diphosphate 25.8 1E+02 0.0035 27.1 5.6 39 96-134 251-289 (341)
30 4ae4_A Ubiquitin-associated pr 25.6 75 0.0026 23.8 4.0 37 106-142 8-44 (118)
31 1rfm_A L-sulfolactate dehydrog 25.6 55 0.0019 29.1 3.8 31 103-133 6-36 (344)
32 2jy5_A Ubiquilin-1; UBA, alter 25.6 69 0.0024 20.2 3.3 37 102-138 8-45 (52)
33 2dak_A Ubiquitin carboxyl-term 25.5 87 0.003 20.5 4.0 35 109-143 12-46 (63)
34 1nxu_A Hypothetical oxidoreduc 25.4 56 0.0019 28.9 3.8 30 103-132 6-35 (333)
35 3d5l_A Regulatory protein RECX 25.2 79 0.0027 26.0 4.5 29 103-131 179-207 (221)
36 1wtj_A Ureidoglycolate dehydro 25.0 57 0.002 29.0 3.8 31 102-132 15-45 (343)
37 1fi6_A EH domain protein REPS1 24.5 64 0.0022 22.0 3.3 39 96-134 16-56 (92)
38 3uoe_A Dehydrogenase; structur 24.4 60 0.002 29.1 3.8 30 103-132 29-58 (357)
39 1rfz_A Hypothetical protein AP 24.4 1.5E+02 0.0052 23.7 5.8 24 109-132 16-39 (168)
40 3i0p_A Malate dehydrogenase; a 23.8 62 0.0021 29.0 3.8 30 103-132 12-41 (365)
41 1v9n_A Malate dehydrogenase; r 23.5 63 0.0022 28.9 3.8 30 103-132 17-46 (360)
42 1vbi_A Type 2 malate/lactate d 23.4 64 0.0022 28.7 3.8 30 103-132 6-35 (344)
43 1z2i_A Malate dehydrogenase; s 23.4 64 0.0022 28.9 3.8 32 101-132 13-44 (358)
44 2bzb_A Conserved domain protei 23.3 38 0.0013 22.7 1.7 28 103-130 11-38 (62)
45 2jo8_A Serine/threonine-protei 23.3 52 0.0018 21.3 2.3 27 90-116 14-40 (51)
46 4h8a_A Ureidoglycolate dehydro 23.0 54 0.0018 29.1 3.2 31 103-133 8-38 (339)
47 3nr7_A DNA-binding protein H-N 21.4 1E+02 0.0035 21.9 3.8 19 105-123 60-78 (86)
48 1xrh_A Ureidoglycolate dehydro 20.5 65 0.0022 28.7 3.2 30 103-132 8-37 (351)
49 2g8y_A Malate/L-lactate dehydr 20.3 65 0.0022 29.2 3.2 33 101-133 30-62 (385)
50 2b7e_A PRE-mRNA processing pro 20.1 1.9E+02 0.0065 19.0 4.7 36 103-138 3-40 (59)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=80.80 E-value=1.4 Score=31.27 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhhhccceeeeehHHHHHHHHHHHHHHHhcCc
Q 026351 57 VLTAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREQEEIITVP 102 (240)
Q Consensus 57 vl~aGla~~iAgalSMa~G~Yls~~se~d~~~~e~~re~~ei~~~p 102 (240)
|++.|+..++.+=+.. ++..|-|....++|+++.+|+-.+||
T Consensus 21 illiGllllliwk~~~----~i~DrrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 21 ILLIGLAALLIWKLLI----TIHDRKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccccCCCC
Confidence 6777888888877653 44555555566666666666655555
No 2
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=60.51 E-value=22 Score=28.36 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHhCCCChhcHHHHHHHHhcCCh
Q 026351 102 PDTEAAEVAGILADYGIEPHEYGPVVNALRKKPQ 135 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~ 135 (240)
+...++.+...|..+||+.+++..+.+.+..+|+
T Consensus 135 ~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~ 168 (177)
T 3e3v_A 135 YRNKQNKIKQSLLTKGFSYDIIDTIIQELDLIFD 168 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCCCC
Confidence 3456788899999999999999999999987664
No 3
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=46.36 E-value=27 Score=28.19 Aligned_cols=43 Identities=9% Similarity=0.028 Sum_probs=31.2
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHH
Q 026351 96 EEIITVPDTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWL 138 (240)
Q Consensus 96 ~ei~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~ 138 (240)
.++...-...+++|.+.+....++++.++++++++.+-.....
T Consensus 88 ~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 88 SALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333334455788888888889999999999999886544333
No 4
>2x06_A L-sulfolactate dehydrogenase; oxidoreductase, hyperthermostable, coenzyme M, methanogens, coenzyme M biosynthesis; HET: NAD; 2.50A {Methanocaldococcus jannaschii}
Probab=45.96 E-value=16 Score=32.67 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
.||+.++.+.++|++.|+++++|+.+++.|...
T Consensus 4 ~~e~~~~~~~~il~~~G~~~~~A~~vA~~lv~a 36 (344)
T 2x06_A 4 KPENEKKLIIDVLKKFGVPEEDAKITADVFVDA 36 (344)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999999998753
No 5
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=43.60 E-value=35 Score=20.52 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCChhcHHHHHHHHhcCChhHHHH
Q 026351 108 EVAGILADYGIEPHEYGPVVNALRKKPQAWLEF 140 (240)
Q Consensus 108 el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~ 140 (240)
+..+.+...||+++.+.+..+.-..|.+..++.
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~ 38 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCNWDLEAATNF 38 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHH
Confidence 345678889999998877766654555544443
No 6
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=42.63 E-value=95 Score=25.39 Aligned_cols=76 Identities=5% Similarity=-0.027 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHH-HhH-hhhHh-------hhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 026351 158 HSALTIAIAYVL-GGM-VPLIP-------YMFIPRATDAVLASVAVTLVALLIFGYAKGYFTGNKPVKSALQTAFIGAIA 228 (240)
Q Consensus 158 ~~al~~~~sf~l-g~l-iPllP-------~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~s~~~~~~~~l~~l~~G~~a 228 (240)
+.|..+.+.|++ |.+ +|+.. |++.|. ....+++.+ +-++.|++.-|...++..+.....+..-++.
T Consensus 65 r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~gPT--gGYLiGF~~---aA~v~G~l~~~~~~~~~~~~~~~~~~~~l~G 139 (198)
T 4dve_A 65 KYGTISVGAFLALALIGLPVLTGGNGGAASFLGPS--GGYRIAWLF---TPFLIGFFLKKLKITTSQNWFGELIIVLLFG 139 (198)
T ss_dssp HHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGSTT--HHHHHHHHH---HHHHHHHHHHHTTGGGSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCccccCCCCchhHHhcch--hHHHHHHHH---HHHHHHHHHHHccccchhhHHHHHHHHHHHH
Confidence 445555555544 444 45432 344442 244444433 3456677776654332222222333344445
Q ss_pred HHHHHHHHhh
Q 026351 229 SAAAFGMAKA 238 (240)
Q Consensus 229 a~~~y~iG~l 238 (240)
..+.|.+|.+
T Consensus 140 ~~~iy~~G~~ 149 (198)
T 4dve_A 140 VIFVDFVGAI 149 (198)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666777654
No 7
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=42.46 E-value=55 Score=20.77 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=25.6
Q ss_pred CchHHHHHHHHHHHhCCC-ChhcHHHHHHHHhcCChhHHHHH
Q 026351 101 VPDTEAAEVAGILADYGI-EPHEYGPVVNALRKKPQAWLEFM 141 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl-~~~~a~~i~~~L~~~~~~~~~~m 141 (240)
.|+.+.++-.+.|.+.|| +++.+....+.-..|.+..++.+
T Consensus 6 ~pe~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 6 MPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp CTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 456666667788999999 66655555554444555544433
No 8
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.40 E-value=44 Score=20.90 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHH
Q 026351 107 AEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMM 142 (240)
Q Consensus 107 ~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~ 142 (240)
++..+.+...|++++.+....+.-..|.+..++.+.
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445677889999999888777765566666665443
No 9
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=41.70 E-value=22 Score=27.97 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcCC----hhHHHHHHHH
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKKP----QAWLEFMMKF 144 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~~----~~~~~~m~~~ 144 (240)
+.||++.|.++|++++..+.+++.|.... ..+.+..++.
T Consensus 34 ~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~ 76 (162)
T 3dfg_A 34 KKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRN 76 (162)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46788888899999999999998887533 4444444433
No 10
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=38.54 E-value=32 Score=20.06 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=15.5
Q ss_pred HHHHHHhCCCChhcHHHHHHHH
Q 026351 109 VAGILADYGIEPHEYGPVVNAL 130 (240)
Q Consensus 109 l~~~~~~~Gl~~~~a~~i~~~L 130 (240)
..+.+...|++++.+++..+.-
T Consensus 7 ~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 7 KIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHc
Confidence 4456777899998887665543
No 11
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=38.37 E-value=18 Score=27.03 Aligned_cols=16 Identities=6% Similarity=0.082 Sum_probs=11.4
Q ss_pred CCChhcHHHHHHHHhc
Q 026351 117 GIEPHEYGPVVNALRK 132 (240)
Q Consensus 117 Gl~~~~a~~i~~~L~~ 132 (240)
|++.++.++++++|++
T Consensus 41 ~l~~~~L~e~~keLh~ 56 (107)
T 1ytz_T 41 HLNEDKLRDKAKELWD 56 (107)
T ss_dssp SSCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5667777777777765
No 12
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=37.79 E-value=50 Score=22.78 Aligned_cols=45 Identities=13% Similarity=0.004 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCchHH--HHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 90 ELKREQEEIITVPDTE--AAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 90 e~~re~~ei~~~p~~e--~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
+.++.-+.++.+.++. .+|+++++++.|+++++++++.+..-.+.
T Consensus 11 ~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~ 57 (95)
T 1c07_A 11 KYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKD 57 (95)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCC
Confidence 3445556666666653 78999999999999988888887765443
No 13
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=37.67 E-value=34 Score=21.53 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=16.5
Q ss_pred ehHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHhC
Q 026351 82 SEADHYARELKRE-QEEIITVPDTEAAEVAGILADY 116 (240)
Q Consensus 82 se~d~~~~e~~re-~~ei~~~p~~e~~el~~~~~~~ 116 (240)
.+.|..+.|+-+| ++|++...++-...+++-|.++
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~~~ 42 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRKR 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666554 3455443333333334333333
No 14
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.48 E-value=73 Score=23.57 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhC-CCChhcHHHHHHHHhcCChhHHHHH
Q 026351 90 ELKREQEEIITVPDTEAAEVAGILADY-GIEPHEYGPVVNALRKKPQAWLEFM 141 (240)
Q Consensus 90 e~~re~~ei~~~p~~e~~el~~~~~~~-Gl~~~~a~~i~~~L~~~~~~~~~~m 141 (240)
|.-|..+.|.+..+.+.++-.+.+.+. |+++++|+.+..+-.-|-+..+..+
T Consensus 23 eQ~rLAq~i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~L 75 (104)
T 1wj7_A 23 EQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL 75 (104)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444555556544444555556677776 9999988777666555544444433
No 15
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=33.99 E-value=32 Score=28.41 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHhCCCChhcHHHHHHHHhcC----ChhHHHHHHHH
Q 026351 102 PDTEAAEVAGILADYGIEPHEYGPVVNALRKK----PQAWLEFMMKF 144 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~----~~~~~~~m~~~ 144 (240)
.+.-+.||++.|.++|++++.++.+.+.|.+. ++.+.+..++.
T Consensus 74 r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~ 120 (221)
T 3d5l_A 74 QMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRT 120 (221)
T ss_dssp SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34446788888888999999898888888753 34444444433
No 16
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=33.92 E-value=41 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=18.9
Q ss_pred HhcCchHHHHHHHHHHHhCCCChhcHHHHHH
Q 026351 98 IITVPDTEAAEVAGILADYGIEPHEYGPVVN 128 (240)
Q Consensus 98 i~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~ 128 (240)
+.+.|-.. -+++|+.||+++++.+...+
T Consensus 25 V~~sp~~~---K~~FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 25 VRQSPLAT---RRAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp GGGSCHHH---HHHHHHHTTCCHHHHHHHHH
T ss_pred hhcCCHHH---HHHHHHHcCCCHHHHHHHHH
Confidence 34455443 35689999999988766543
No 17
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.00 E-value=35 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHH
Q 026351 107 AEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMM 142 (240)
Q Consensus 107 ~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~ 142 (240)
++..+.|.+.||+++++....+.-..|.+..++.++
T Consensus 30 ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 30 EEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445677889999999998888876677776666554
No 18
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=31.92 E-value=20 Score=26.64 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=26.2
Q ss_pred hhccceeeeehHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 026351 73 GLGGYLAAKSEADHYARELKREQEEIITVPDTEAAEVAGIL 113 (240)
Q Consensus 73 a~G~Yls~~se~d~~~~e~~re~~ei~~~p~~e~~el~~~~ 113 (240)
=+|.||+...+-.-.+...-+|.|++-+ ++|++.|+.++
T Consensus 59 ~iGdyLA~~vdP~N~EerlLkELW~Va~--eeEq~~LA~mm 97 (104)
T 3d0w_A 59 ILGDYLAKHEEPQNGEEMLLQELWSVAD--EDEKEHLAQLL 97 (104)
T ss_dssp HHHHHHHTCCCCCSHHHHHHHHHHHHCC--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence 4568888887766666666777777754 55666665544
No 19
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=31.66 E-value=77 Score=27.85 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=27.3
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 96 EEIITVPDTEAAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 96 ~ei~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
..+++.++.+++.+.++|.+...++++.+.+.+.+.+..
T Consensus 244 ~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g 282 (334)
T 3rmg_A 244 YALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNG 282 (334)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 344455566677888888777777777777777776654
No 20
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=29.26 E-value=84 Score=20.70 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHh
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALR 131 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~ 131 (240)
.++..+.|...|+++.+|+++++.+.
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v~ 42 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDLL 42 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46788899999999999999999985
No 21
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=29.16 E-value=1.2e+02 Score=20.23 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=28.7
Q ss_pred HHHHHhcCchH--HHHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 94 EQEEIITVPDT--EAAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 94 e~~ei~~~p~~--e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
--+.++.+.++ .++|+...++..|+++++++.+.+.+-.+.
T Consensus 32 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~ 74 (91)
T 2pmy_A 32 VFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADR 74 (91)
T ss_dssp HHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCC
Confidence 33445555444 378899999999998888877777765443
No 22
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=29.13 E-value=52 Score=22.64 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=22.2
Q ss_pred HhcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 98 IITVPDTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 98 i~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
+.+.|-.. -+++|+.||+++++.+...++-..
T Consensus 30 V~~sp~~~---K~~FL~sKGLt~eEI~~Al~ra~~ 61 (70)
T 2w84_A 30 VRQSPLAT---RRAFLKKKGLTDEEIDMAFQQSGT 61 (70)
T ss_dssp GGGSCHHH---HHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred hhhCCHHH---HHHHHHHcCCCHHHHHHHHHHccC
Confidence 34455443 356899999999998877776543
No 23
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=29.01 E-value=34 Score=20.66 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc
Q 026351 188 VLASVAVTLVALLIFGYAKGYFTGNK 213 (240)
Q Consensus 188 ~~~s~~~~~~~L~~~G~~~a~~s~~~ 213 (240)
+.-++++-++.||++|+...-=++++
T Consensus 7 ~Vy~vV~ffvsLFiFGfLsnDP~RNP 32 (38)
T 3arc_I 7 TVYIVVTFFVLLFVFGFLSGDPARNP 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGCSS
T ss_pred eehhHHHHHHHHHHccccCCCCCCCC
Confidence 34556777888999998876554433
No 24
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=28.40 E-value=75 Score=19.60 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHhCCCChhcH-HHHHHHHhcCChhHHH
Q 026351 102 PDTEAAEVAGILADYGIEPHEY-GPVVNALRKKPQAWLE 139 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a-~~i~~~L~~~~~~~~~ 139 (240)
|+...++-.+.+.+.||+++++ .+.-+.-.-|.+..++
T Consensus 3 p~~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave 41 (46)
T 2bwb_A 3 PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALD 41 (46)
T ss_dssp HHHHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHH
Confidence 4444455567788999976543 3333333334444443
No 25
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.31 E-value=23 Score=28.34 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHhCCCChhcHHHHHHHHhcC----ChhHHHHHH
Q 026351 102 PDTEAAEVAGILADYGIEPHEYGPVVNALRKK----PQAWLEFMM 142 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~----~~~~~~~m~ 142 (240)
.+.-+.||++.|.++|++++..+.+++.|.+. +..+.+..+
T Consensus 31 r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~v 75 (177)
T 3e3v_A 31 QLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYV 75 (177)
T ss_dssp SCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34446788889999999999999999998863 344444443
No 26
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=27.65 E-value=47 Score=22.30 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHH
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMK 143 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~ 143 (240)
+..|++|.+.-.+.|++.+..-+..++| |.++...++
T Consensus 11 E~kR~eL~~l~~k~Gl~~~~vI~~SQeL----D~LIn~Y~k 47 (64)
T 2c0s_A 11 EAKKKELIYLVEKYGFTHHKVISFSQEL----DRLLNLLIE 47 (64)
T ss_dssp HHHHHHHHHHHHHTCTTSHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH----HHHHHHHHH
Confidence 3456888888899999998887777776 444444433
No 27
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.30 E-value=70 Score=21.17 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHH
Q 026351 108 EVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMK 143 (240)
Q Consensus 108 el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~ 143 (240)
+..+.|...||+++.|.+..+.-..|.+..++.++.
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345567889999998877666655566666665543
No 28
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=26.09 E-value=4.9e+02 Score=25.77 Aligned_cols=163 Identities=12% Similarity=-0.010 Sum_probs=80.7
Q ss_pred hhccceeeeehHHHHHHHHHHHH---------HHHhcCchHH----HHHHHHHHHhC---------CCChhcHHHHHHHH
Q 026351 73 GLGGYLAAKSEADHYARELKREQ---------EEIITVPDTE----AAEVAGILADY---------GIEPHEYGPVVNAL 130 (240)
Q Consensus 73 a~G~Yls~~se~d~~~~e~~re~---------~ei~~~p~~e----~~el~~~~~~~---------Gl~~~~a~~i~~~L 130 (240)
|-|+|+...=-.|..|+|-..-+ +..+.-+++| ++++++.|++. .+|+++++.+.+..
T Consensus 89 GhGaY~aPD~TAd~Lh~~~~~~~~~~a~~~~g~~~~~l~~~~~~~~~~~~~~elr~n~yd~~~~~l~~s~~~a~A~~~~~ 168 (800)
T 3ayf_A 89 GHGSYMGPDYTAEALKVYTEGMQDYKAKERYNKPFADLTDDEKSIIREQVIKEMRKNRYNPVTDVLVLTDAQVYGLEKVR 168 (800)
T ss_dssp TEECSSSCBHHHHHHHHHHHHHHHHHTC-------CCSCHHHHHHHHHHHHHHHTSCCEETTTTEEECCHHHHHHHHHHH
T ss_pred cCCcccCcchHHHHHHHHHHHHHHHHHHHhhCcchhhcCHHHHHHHHHHHHHHHHhcCCCCCCCcEEECHHHHHHHHHHH
Confidence 55788877766666665543211 1122222333 34566666653 35677777776666
Q ss_pred hcCChhHHHHHHHHhcCCCCCChh-------------hH-HHHHHHHHHHHHHHhHh--------------hhHhhhccc
Q 026351 131 RKKPQAWLEFMMKFELGLEKPDPR-------------RA-LHSALTIAIAYVLGGMV--------------PLIPYMFIP 182 (240)
Q Consensus 131 ~~~~~~~~~~m~~~e~g~~~~~~~-------------~P-~~~al~~~~sf~lg~li--------------PllP~~~~~ 182 (240)
..+.+.+.+. +++++.+.... +| =..-++.|+....=+.. |==|-.=..
T Consensus 169 ~~y~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ff~w~aw~~~~~rp~~~~sytnnwp~~p~~~n~ 245 (800)
T 3ayf_A 169 DYYRDVFTNG---DGWGLKKGLIKESDMPKANRAWVADSDQIQQIADFFFWTAWLSSTLRIGDEITYTNNWPYYEDAGNT 245 (800)
T ss_dssp HHHHHHHHHC---CSSSCCTTCCCGGGSCSSCCSSSCSSCHHHHHHHHHHHHHHHHHSBCTTCSSBTTTTCSCBGGGTBC
T ss_pred HHHHHHhCCc---cccCCCccccCcccccccccccCCCHHHHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCCCCCCCC
Confidence 5555444432 56666442221 22 13344455444222222 111111111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcC------------C------------chhHHHHHHHHHHHHHHHHHHHHHhh
Q 026351 183 RATDAVLASVAVTLVALLIFGYAKGYFTG------------N------------KPVKSALQTAFIGAIASAAAFGMAKA 238 (240)
Q Consensus 183 ~~~~a~~~s~~~~~~~L~~~G~~~a~~s~------------~------------~~~~~~l~~l~~G~~aa~~~y~iG~l 238 (240)
+....+.+|++-.++.+..+|.....+.. + +-.|.+++..+++.+.-++.-.+|-+
T Consensus 246 pt~~~~~ws~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~k~i~~~yf~~a~~~flvg~llGll 325 (800)
T 3ayf_A 246 MSFSAVWWSGASVTILILFIGIILYVFYRYQLSMQEAYAEGKFPVIDLRRQPLTPSQVKAGKYFVVVSALFFVQTMFGAL 325 (800)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCBSSCTTCCCCCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcccCchhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12346777777666666666666544421 1 23466777776666665555555543
No 29
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=25.82 E-value=1e+02 Score=27.14 Aligned_cols=39 Identities=8% Similarity=0.074 Sum_probs=28.8
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 96 EEIITVPDTEAAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 96 ~ei~~~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
..+++.++.+++.+.++|.+...++++.+.+.+.+.+..
T Consensus 251 ~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~g 289 (341)
T 3mzv_A 251 KAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHG 289 (341)
T ss_dssp HHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTT
T ss_pred HHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 456667777788888888776677777777777776654
No 30
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=25.59 E-value=75 Score=23.80 Aligned_cols=37 Identities=8% Similarity=0.129 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHH
Q 026351 106 AAEVAGILADYGIEPHEYGPVVNALRKKPQAWLEFMM 142 (240)
Q Consensus 106 ~~el~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~ 142 (240)
.+++.+.|...||+.+.+.+.......+++..++.+.
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~ 44 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLF 44 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4667788999999999998888888777766555443
No 31
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M, hyperthermostable, Pro-S hydrogen transfer; HET: NAD; 2.50A {Methanocaldococcus jannaschii} PDB: 2x06_A*
Probab=25.58 E-value=55 Score=29.13 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
++-++.+.++|++.|+++++|+.+++.|...
T Consensus 6 ~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~a 36 (344)
T 1rfm_A 6 ENEKKLIIDVLKKFGVPEEDAKITADVFVDA 36 (344)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3446778899999999999999999998753
No 32
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=25.57 E-value=69 Score=20.24 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHhCCC-ChhcHHHHHHHHhcCChhHH
Q 026351 102 PDTEAAEVAGILADYGI-EPHEYGPVVNALRKKPQAWL 138 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl-~~~~a~~i~~~L~~~~~~~~ 138 (240)
|+.+.++-.+.|.+.|| +++.+.+....-..|.+..+
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~ 45 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAI 45 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 45555566678889999 65555544444434444433
No 33
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.53 E-value=87 Score=20.47 Aligned_cols=35 Identities=6% Similarity=0.149 Sum_probs=24.8
Q ss_pred HHHHHHhCCCChhcHHHHHHHHhcCChhHHHHHHH
Q 026351 109 VAGILADYGIEPHEYGPVVNALRKKPQAWLEFMMK 143 (240)
Q Consensus 109 l~~~~~~~Gl~~~~a~~i~~~L~~~~~~~~~~m~~ 143 (240)
..+.|...||+++.+++..+.-..+.+..++.++.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 12 CVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34557778999988888777766677766665543
No 34
>1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural genomics, PSI, protein structure initiative; 1.80A {Escherichia coli} SCOP: c.122.1.1 PDB: 1s20_A*
Probab=25.38 E-value=56 Score=28.92 Aligned_cols=30 Identities=10% Similarity=0.240 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
++-++.+.++|++.|+++++|+.+++.|..
T Consensus 6 ~~l~~~~~~~l~~~G~~~~~A~~vA~~lv~ 35 (333)
T 1nxu_A 6 EQLKAAFNRVLISRGVDSETADACAEMFAR 35 (333)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444678889999999999999999998875
No 35
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=25.16 E-value=79 Score=25.96 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHh
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALR 131 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~ 131 (240)
..+++.+...|..+||+.+++..+.+.+.
T Consensus 179 ~~~k~K~~~~L~rrGFs~~~I~~vl~~~~ 207 (221)
T 3d5l_A 179 RRREQKVQQGLTTKGFSSSVYEMIKDEVV 207 (221)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence 45689999999999999999988877664
No 36
>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme, oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB: 2cwf_A* 2cwh_A*
Probab=25.05 E-value=57 Score=29.01 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 102 PDTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 102 p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
.++-++.+.++|++.|+++++|+.+++.|..
T Consensus 15 ~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 45 (343)
T 1wtj_A 15 YPQLIDLLRRIFVVHGTSPEVADVLAENCAS 45 (343)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445678889999999999999999999875
No 37
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.48 E-value=64 Score=21.99 Aligned_cols=39 Identities=5% Similarity=-0.037 Sum_probs=27.1
Q ss_pred HHHhcCchH--HHHHHHHHHHhCCCChhcHHHHHHHHhcCC
Q 026351 96 EEIITVPDT--EAAEVAGILADYGIEPHEYGPVVNALRKKP 134 (240)
Q Consensus 96 ~ei~~~p~~--e~~el~~~~~~~Gl~~~~a~~i~~~L~~~~ 134 (240)
..++.+.++ ..+|++++++..|++.++++++.+..-.+.
T Consensus 16 ~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~ 56 (92)
T 1fi6_A 16 KTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDK 56 (92)
T ss_dssp TTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTC
T ss_pred HHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCC
Confidence 344444444 378888999888999888888777664443
No 38
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.31A {Sinorhizobium meliloti}
Probab=24.38 E-value=60 Score=29.11 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
++-++.+.++|++.|+++++|+.+++.|..
T Consensus 29 ~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 58 (357)
T 3uoe_A 29 ARLRNLSVALLEKRGVPADSARLQANLLLE 58 (357)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444678889999999999999999999875
No 39
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=24.36 E-value=1.5e+02 Score=23.70 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=16.8
Q ss_pred HHHHHHhCCCChhcHHHHHHHHhc
Q 026351 109 VAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 109 l~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
..+.|+++|++-++..+++-.|++
T Consensus 16 ~~~~L~~rGVtl~dia~~~~~Lq~ 39 (168)
T 1rfz_A 16 ARRWLEERGVTVEKIAELVYYLQS 39 (168)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcC
Confidence 455677777777777777777754
No 40
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=23.80 E-value=62 Score=29.04 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
++-++.+.++|++.|+++++|+.+++.|..
T Consensus 12 ~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 41 (365)
T 3i0p_A 12 DTIKEFMYQVLLKVGSDEENARMVRDTLIA 41 (365)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444677889999999999999999999875
No 41
>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiati structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii}
Probab=23.45 E-value=63 Score=28.91 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
++-++.+.++|++.|+++++|+.+++.|..
T Consensus 17 ~el~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 46 (360)
T 1v9n_A 17 DRLFSFIVRVLTKLGVPEEDAKIVADNLVM 46 (360)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444678889999999999999999999875
No 42
>1vbi_A Type 2 malate/lactate dehydrogenase; malate dehydrogenase, NAD(P) binding protein, thermus thermo HB8, structural genomics; HET: NAD; 1.80A {Thermus thermophilus} PDB: 1x0a_A
Probab=23.45 E-value=64 Score=28.68 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
++-++.+.++|++.|+++++|+.+++.|..
T Consensus 6 ~~l~~~~~~~l~~~G~~~~~A~~vA~~lv~ 35 (344)
T 1vbi_A 6 DFLSAWAEALLRKAGADEPSAKAVAWALVE 35 (344)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344677889999999999999999999875
No 43
>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens}
Probab=23.35 E-value=64 Score=28.86 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
..++-++.+.++|++.|+++++|+.+++.|..
T Consensus 13 ~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 44 (358)
T 1z2i_A 13 RLDELERFCRAVFLAVGTDEETADAATRAMMH 44 (358)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34555778899999999999999999999875
No 44
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=23.35 E-value=38 Score=22.66 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHH
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNAL 130 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L 130 (240)
+..|++|.+.-.+.|++.+..-++.++|
T Consensus 11 E~kR~eL~~l~~k~Gl~~~~vI~~SQeL 38 (62)
T 2bzb_A 11 ENKKKELIQLVARHGLDHDKVLLFSRDL 38 (62)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456788888888999998887777766
No 45
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.32 E-value=52 Score=21.25 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhC
Q 026351 90 ELKREQEEIITVPDTEAAEVAGILADY 116 (240)
Q Consensus 90 e~~re~~ei~~~p~~e~~el~~~~~~~ 116 (240)
|..+....++...+.|.++++..|+.|
T Consensus 14 EL~~rl~~Ld~~Me~Ei~elr~RY~~K 40 (51)
T 2jo8_A 14 DLQKRLLALDPMMEQEIEEIRQKYQSK 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHh
Confidence 444555677777788888998888764
No 46
>4h8a_A Ureidoglycolate dehydrogenase; rossmann fold, oxidoreductase; HET: NAI; 1.64A {Escherichia coli} PDB: 4fju_A* 4fjs_A* 1xrh_A
Probab=22.97 E-value=54 Score=29.12 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
++-++.+.++|++.|+++++|+.+++.|...
T Consensus 8 ~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~a 38 (339)
T 4h8a_A 8 ETLHQLIENKLCQAGLKREHAATVAEVLVYA 38 (339)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3446778899999999999999999998753
No 47
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.37 E-value=1e+02 Score=21.88 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhCCCChhcH
Q 026351 105 EAAEVAGILADYGIEPHEY 123 (240)
Q Consensus 105 e~~el~~~~~~~Gl~~~~a 123 (240)
..+++.+.+.+.|+++++.
T Consensus 60 Kl~~~~e~l~~~GI~~eeL 78 (86)
T 3nr7_A 60 KLQQYREMLIADGIDPNEL 78 (86)
T ss_dssp HHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHH
Confidence 3567777888889998765
No 48
>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI; 2.25A {Escherichia coli} SCOP: c.122.1.1
Probab=20.53 E-value=65 Score=28.75 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhCCCChhcHHHHHHHHhc
Q 026351 103 DTEAAEVAGILADYGIEPHEYGPVVNALRK 132 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~ 132 (240)
++-++.+.++|++.|+++++|+.+++.|..
T Consensus 8 ~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 37 (351)
T 1xrh_A 8 ETLHQLIENKLCQAGLKREHAATVAEVLVY 37 (351)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344677889999999999999999999875
No 49
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: NAD 1PE; 2.15A {Escherichia coli}
Probab=20.32 E-value=65 Score=29.16 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHhCCCChhcHHHHHHHHhcC
Q 026351 101 VPDTEAAEVAGILADYGIEPHEYGPVVNALRKK 133 (240)
Q Consensus 101 ~p~~e~~el~~~~~~~Gl~~~~a~~i~~~L~~~ 133 (240)
..++-++.+.++|++.|+++++|+.+++.|...
T Consensus 30 ~~~el~~~~~~~l~~~G~~~~~A~~vA~~Lv~A 62 (385)
T 2g8y_A 30 DAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAA 62 (385)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 445567888999999999999999999998753
No 50
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.08 E-value=1.9e+02 Score=19.01 Aligned_cols=36 Identities=14% Similarity=0.491 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhCCCCh-hcHHHHHHHH-hcCChhHH
Q 026351 103 DTEAAEVAGILADYGIEP-HEYGPVVNAL-RKKPQAWL 138 (240)
Q Consensus 103 ~~e~~el~~~~~~~Gl~~-~~a~~i~~~L-~~~~~~~~ 138 (240)
++..+...++|++.++++ .+=+++.+.+ .+||.-|.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~a 40 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWM 40 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcccc
Confidence 444577788999999976 4888999999 89997655
Done!