Query 026352
Match_columns 240
No_of_seqs 140 out of 1171
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 11:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.3 6.7E-07 2.3E-11 67.4 5.4 70 65-140 34-104 (137)
2 3b5d_A Multidrug transporter E 98.2 2E-06 6.9E-11 62.3 5.9 69 65-139 34-103 (110)
3 1q90_R Cytochrome B6-F complex 13.0 2.3E+02 0.0079 16.6 3.5 21 52-72 6-26 (49)
4 2k9p_A Pheromone alpha factor 5.7 5.8E+02 0.02 16.4 3.3 17 30-46 26-42 (80)
5 4hyg_A Putative uncharacterize 4.8 1.3E+03 0.046 18.8 6.1 9 124-132 129-137 (301)
6 1afo_A Glycophorin A; integral 4.5 5.8E+02 0.02 14.1 3.3 14 125-138 17-30 (40)
7 2hac_A T-cell surface glycopro 4.0 5.9E+02 0.02 13.5 2.0 12 104-115 19-30 (33)
8 2zjs_E Preprotein translocase 3.7 7.9E+02 0.027 14.5 3.1 22 113-134 16-37 (60)
9 2jp3_A FXYD domain-containing 2.7 9.1E+02 0.031 15.0 2.1 15 124-138 23-37 (67)
10 3kl4_B DPAP B, YSCV, signal pe 2.7 7.8E+02 0.027 13.2 1.6 14 1-14 18-31 (42)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.31 E-value=6.7e-07 Score=67.41 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcceeeee-ccchhHHHHHHHHHHhhccccccCCCCccchhhHHHHHHHHHHHHHh
Q 026352 65 LLSLLGVSLALNLYFASMKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFY 140 (240)
Q Consensus 65 ~~g~~~~~~~~~~~~~~l~~~~~~~a~ii-~~~~P~~~~ll~~~~~~e~~~~~~~~~~~~~~g~~i~~~G~~~~~~~ 140 (240)
+.+++...+++.++..++++.+++.+..+ .++.|++++++++++++|++++++ ++|+.+.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 45666677899999999999999999888 899999999999999999999999 69999999999887643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.22 E-value=2e-06 Score=62.34 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcceeeee-ccchhHHHHHHHHHHhhccccccCCCCccchhhHHHHHHHHHHHHH
Q 026352 65 LLSLLGVSLALNLYFASMKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139 (240)
Q Consensus 65 ~~g~~~~~~~~~~~~~~l~~~~~~~a~ii-~~~~P~~~~ll~~~~~~e~~~~~~~~~~~~~~g~~i~~~G~~~~~~ 139 (240)
..+.++...++.++..++++.|.+.+..+ ..+.|+.+++++++++||+++.++ ++|+.+.++|++.+..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 45556666889999999999999999888 799999999999999999999999 5999999999988753
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=13.04 E-value=2.3e+02 Score=16.57 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 026352 52 RPKLTLAVFLEIFLLSLLGVS 72 (240)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~ 72 (240)
.+.++||+++..+..|..+..
T Consensus 6 ~pdm~RRqfln~l~~G~~a~~ 26 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGAGLP 26 (49)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHH
Confidence 456778888888777766643
No 4
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=5.71 E-value=5.8e+02 Score=16.44 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026352 30 TYRHAAGSLMMFPFAYF 46 (240)
Q Consensus 30 ~~R~~~a~l~l~~~~~~ 46 (240)
..|...+.+.++.+...
T Consensus 26 G~~iGAs~llliil~ll 42 (80)
T 2k9p_A 26 GVRSGAAALTLIVVWIT 42 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555444433
No 5
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=4.84 E-value=1.3e+03 Score=18.83 Aligned_cols=9 Identities=56% Similarity=0.575 Sum_probs=5.5
Q ss_pred hhhHHHHHH
Q 026352 124 ILGTLASLV 132 (240)
Q Consensus 124 ~~g~~i~~~ 132 (240)
..|++++..
T Consensus 129 ~~Gi~~~aG 137 (301)
T 4hyg_A 129 ILGVLISAG 137 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 467666653
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=4.52 E-value=5.8e+02 Score=14.14 Aligned_cols=14 Identities=21% Similarity=0.762 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHH
Q 026352 125 LGTLASLVGVMVIA 138 (240)
Q Consensus 125 ~g~~i~~~G~~~~~ 138 (240)
.|...+++|.+++.
T Consensus 17 ~~vmaGiIG~IllI 30 (40)
T 1afo_A 17 FGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666666654
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.04 E-value=5.9e+02 Score=13.53 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=6.1
Q ss_pred HHHHHhhccccc
Q 026352 104 IAVVFRLEIVDV 115 (240)
Q Consensus 104 l~~~~~~e~~~~ 115 (240)
+..++.+||++.
T Consensus 19 ~T~Ly~R~K~~~ 30 (33)
T 2hac_A 19 LTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHHHHhhc
Confidence 344455666544
No 8
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=3.68 E-value=7.9e+02 Score=14.47 Aligned_cols=22 Identities=0% Similarity=-0.088 Sum_probs=13.4
Q ss_pred ccccCCCCccchhhHHHHHHHH
Q 026352 113 VDVRSPRGIAKILGTLASLVGV 134 (240)
Q Consensus 113 ~~~~~~~~~~~~~g~~i~~~G~ 134 (240)
+.+-.||+|.....-.+.++..
T Consensus 16 lkKV~WPtr~e~~~~t~vViv~ 37 (60)
T 2zjs_E 16 LARVTWPTREQVVEGTQAILLF 37 (60)
T ss_dssp CCCCCCSCSSSHHHHHHHHHHH
T ss_pred HhhccCcCHHHHHHHHHHHHHH
Confidence 4455678888776655544433
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=2.72 E-value=9.1e+02 Score=15.03 Aligned_cols=15 Identities=27% Similarity=0.580 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHH
Q 026352 124 ILGTLASLVGVMVIA 138 (240)
Q Consensus 124 ~~g~~i~~~G~~~~~ 138 (240)
+.+.++.+.|++++.
T Consensus 23 ifA~vLfi~GI~iil 37 (67)
T 2jp3_A 23 IFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
No 10
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=2.69 E-value=7.8e+02 Score=13.16 Aligned_cols=14 Identities=29% Similarity=0.505 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHH
Q 026352 1 MILLQICVASVYFL 14 (240)
Q Consensus 1 ~~~~~~~wg~~~i~ 14 (240)
.+++.++||..-+.
T Consensus 18 iilvlliwgtvlll 31 (42)
T 3kl4_B 18 IILVLLIWGTVLLL 31 (42)
T ss_pred eehhHHHHHHHHHh
Done!