Query 026352
Match_columns 240
No_of_seqs 140 out of 1171
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 11:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026352.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026352hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 27.3 30 0.0022 16.0 2.8 19 165-183 2-20 (27)
2 d1q90r_ f.23.12.1 (R:) ISP sub 6.4 2E+02 0.014 14.7 3.5 20 53-72 5-24 (39)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 3.4 8.8E+02 0.064 18.3 12.7 36 173-210 289-327 (383)
4 d1q90a3 f.23.23.1 (A:248-292) 3.0 4.1E+02 0.03 13.8 3.5 27 164-190 4-30 (45)
5 d1gl4a1 d.22.1.2 (A:399-631) D 2.1 2.6E+02 0.019 20.3 0.6 36 81-117 44-79 (233)
6 d1dq3a2 d.50.3.1 (A:336-414) P 2.1 1E+02 0.0076 17.8 -1.4 20 108-127 34-53 (79)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 1.6 6.5E+02 0.047 12.2 3.7 19 164-182 17-35 (37)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 1.5 6.8E+02 0.049 12.2 1.9 15 94-108 16-30 (37)
9 d1q79a1 a.160.1.1 (A:215-364) 1.1 3.7E+02 0.027 17.9 -0.2 14 167-180 24-37 (150)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 1.1 1.7E+03 0.12 15.3 5.9 62 25-86 20-81 (248)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=27.27 E-value=30 Score=16.01 Aligned_cols=19 Identities=5% Similarity=0.347 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 026352 165 LKGSILTVASCILWSSFYI 183 (240)
Q Consensus 165 ~~G~~l~l~a~~~~a~~~v 183 (240)
..|.+..-++++.||.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3578888889999988753
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.41 E-value=2e+02 Score=14.71 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 026352 53 PKLTLAVFLEIFLLSLLGVS 72 (240)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~ 72 (240)
|...+|++..+++.|.+...
T Consensus 5 pDMgrR~~MNLll~G~~~~~ 24 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLP 24 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchh
Confidence 44567788887777766543
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=3.36 E-value=8.8e+02 Score=18.34 Aligned_cols=36 Identities=6% Similarity=0.031 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhhcCCchhHHHH---HHHHHHHHHH
Q 026352 173 ASCILWSSFYIMQAFTLKKYPAKLSISA---WMNCIGAAQS 210 (240)
Q Consensus 173 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~---~~~~~~~l~~ 210 (240)
.+.+|+-.+..+.+|. +.|||..... ..-+.|.+..
T Consensus 289 ~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~ 327 (383)
T d1u7ga_ 289 AGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMT 327 (383)
T ss_dssp HHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHH
Confidence 4556666666665443 2334544433 4444444433
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.01 E-value=4.1e+02 Score=13.75 Aligned_cols=27 Identities=7% Similarity=0.241 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026352 164 WLKGSILTVASCILWSSFYIMQAFTLK 190 (240)
Q Consensus 164 ~~~G~~l~l~a~~~~a~~~v~~k~~~~ 190 (240)
...|.+..+.+.+.--+..|+-||--+
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfE 30 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFE 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888877788887766433
No 5
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.09 E-value=2.6e+02 Score=20.28 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=29.1
Q ss_pred hhcccCcceeeeeccchhHHHHHHHHHHhhccccccC
Q 026352 81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRS 117 (240)
Q Consensus 81 ~l~~~~~~~a~ii~~~~P~~~~ll~~~~~~e~~~~~~ 117 (240)
++..+++..+..+..+.|+.. .++|+|=+|.-...+
T Consensus 44 aIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~N 79 (233)
T d1gl4a1 44 AISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFKN 79 (233)
T ss_dssp EEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCCC
T ss_pred EccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCccC
Confidence 566777777888888888887 569999999888777
No 6
>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.09 E-value=1e+02 Score=17.79 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=14.4
Q ss_pred HhhccccccCCCCccchhhH
Q 026352 108 FRLEIVDVRSPRGIAKILGT 127 (240)
Q Consensus 108 ~~~e~~~~~~~~~~~~~~g~ 127 (240)
+.+||+++-||+.|-++.-.
T Consensus 34 i~~ekislgqwh~rgrvska 53 (79)
T d1dq3a2 34 INDERISLGQWHTRNRVSKA 53 (79)
T ss_dssp ETTEEEECTTHHHHSCEEHH
T ss_pred ecCceeehhhhhhcCcchHH
Confidence 46899999998766665543
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.57 E-value=6.5e+02 Score=12.17 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026352 164 WLKGSILTVASCILWSSFY 182 (240)
Q Consensus 164 ~~~G~~l~l~a~~~~a~~~ 182 (240)
..+|.++.+.-++.++-|.
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3578888888887777764
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.51 E-value=6.8e+02 Score=12.17 Aligned_cols=15 Identities=27% Similarity=0.591 Sum_probs=8.9
Q ss_pred ccchhHHHHHHHHHH
Q 026352 94 VNTIPCMTFIIAVVF 108 (240)
Q Consensus 94 ~~~~P~~~~ll~~~~ 108 (240)
....|++..++++++
T Consensus 16 lPiIPv~f~lLafVW 30 (37)
T d2axtk1 16 LPVIPVLFLALAFVW 30 (37)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 345666666666554
No 9
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.15 E-value=3.7e+02 Score=17.87 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 026352 167 GSILTVASCILWSS 180 (240)
Q Consensus 167 G~~l~l~a~~~~a~ 180 (240)
|..++.++++.||+
T Consensus 24 sn~~GflGGI~waI 37 (150)
T d1q79a1 24 SNILGFLGGVSWAM 37 (150)
T ss_dssp CTTTTSBCHHHHHH
T ss_pred cccccccHHHHHHH
Confidence 44455556666654
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=1.14 E-value=1.7e+03 Score=15.34 Aligned_cols=62 Identities=6% Similarity=-0.159 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 026352 25 PHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVH 86 (240)
Q Consensus 25 p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 86 (240)
+..+..-++.++.+++........--..++...-.++.--+..++...++...|...+.+|+
T Consensus 20 ~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTN 81 (248)
T d2r6gf1 20 VLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTN 81 (248)
T ss_dssp HHHHGGGCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBC
T ss_pred HHHHHcchHHHHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeEEEEEEEE
Done!