BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026354
         (240 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3A|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3A|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3A|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3A|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3A|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3A|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3A|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3A|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3A|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Methionine Sulfoximine Phosphate
 pdb|2D3B|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3B|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3B|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3B|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3B|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3B|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3B|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3B|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3B|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3B|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Amppnp And Methionine Sulfoximine
 pdb|2D3C|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
 pdb|2D3C|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
 pdb|2D3C|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
 pdb|2D3C|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
 pdb|2D3C|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
 pdb|2D3C|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
 pdb|2D3C|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
 pdb|2D3C|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
 pdb|2D3C|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
 pdb|2D3C|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
           Complexed With Adp And Phosphinothricin Phosphate
          Length = 356

 Score =  349 bits (895), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/207 (81%), Positives = 182/207 (87%)

Query: 16  TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
           T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQ
Sbjct: 16  TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75

Query: 76  AIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLL 135
           AIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS  +V AEEPWYGIEQEYTLL
Sbjct: 76  AIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLL 135

Query: 136 QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMP 195
           QKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMP
Sbjct: 136 QKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMP 195

Query: 196 GQWEFQVGPAVGISAGDQLWVARYILE 222
           GQWEFQVGP+VGIS+GDQ+WVARYILE
Sbjct: 196 GQWEFQVGPSVGISSGDQVWVARYILE 222


>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|B Chain B, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|C Chain C, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|D Chain D, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|E Chain E, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|F Chain F, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|G Chain G, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|H Chain H, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|I Chain I, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|J Chain J, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|K Chain K, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|L Chain L, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|M Chain M, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|N Chain N, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|O Chain O, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|P Chain P, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|Q Chain Q, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|R Chain R, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|S Chain S, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
 pdb|3FKY|T Chain T, Crystal Structure Of The Glutamine Synthetase Gln1deltan18
           From The Yeast Saccharomyces Cerevisiae
          Length = 370

 Score =  206 bits (524), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 108/209 (51%), Positives = 137/209 (65%), Gaps = 12/209 (5%)

Query: 18  KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAI 77
           +IIAEY+WI G+G ++RSK RTL   ++   +LP+WN+DGSST QAPG DS++ L P A 
Sbjct: 23  RIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAY 81

Query: 78  FKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS-HSDVVAEEPWYGIEQEYTL-- 134
           + DPFRRG+NI+V+   Y   G P   N RH AAK+F+ H D   EE W+G+EQEYTL  
Sbjct: 82  YPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHKD---EEIWFGLEQEYTLFD 138

Query: 135 LQKDV-KWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEV 193
           +  DV  WP                    A K + RD++++HY+ACLYAG+ ISGIN EV
Sbjct: 139 MYDDVYGWP----KGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEV 194

Query: 194 MPGQWEFQVGPAVGISAGDQLWVARYILE 222
           MP QWEFQVGP  GI  GDQLW+ARY L 
Sbjct: 195 MPSQWEFQVGPCTGIDMGDQLWMARYFLH 223


>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Phosphate
 pdb|2OJW|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Phosphate
 pdb|2OJW|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Phosphate
 pdb|2OJW|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Phosphate
 pdb|2OJW|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Phosphate
 pdb|2QC8|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
 pdb|2QC8|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
 pdb|2QC8|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
 pdb|2QC8|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
 pdb|2QC8|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
 pdb|2QC8|F Chain F, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
 pdb|2QC8|G Chain G, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
 pdb|2QC8|H Chain H, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
 pdb|2QC8|I Chain I, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
 pdb|2QC8|J Chain J, Crystal Structure Of Human Glutamine Synthetase In Complex
           With Adp And Methionine Sulfoximine Phosphate
          Length = 384

 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/211 (46%), Positives = 131/211 (62%), Gaps = 5/211 (2%)

Query: 17  DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
           +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A
Sbjct: 43  EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAA 102

Query: 77  IFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ 136
           +F+DPFR+  N LV+C+ +     P  TN RH   +I     V  + PW+G+EQEYTL+ 
Sbjct: 103 MFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDM--VSNQHPWFGMEQEYTLMG 160

Query: 137 KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 196
            D   P                    AD+A+GRDIV++HY+ACLYAG+ I+G N EVMP 
Sbjct: 161 TD-GHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPA 219

Query: 197 QWEFQVGPAVGISAGDQLWVARYILEDYRDC 227
           QWEFQ+GP  GIS GD LWVAR+IL  +R C
Sbjct: 220 QWEFQIGPCEGISMGDHLWVARFIL--HRVC 248


>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|B Chain B, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|C Chain C, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|D Chain D, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|E Chain E, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|F Chain F, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|G Chain G, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|H Chain H, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|I Chain I, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|J Chain J, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|K Chain K, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|L Chain L, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|M Chain M, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|N Chain N, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
 pdb|2UU7|O Chain O, Crystal Structure Of Apo Glutamine Synthetase From Dog (
           Canis Familiaris)
          Length = 381

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/211 (47%), Positives = 130/211 (61%), Gaps = 5/211 (2%)

Query: 17  DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
           +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A
Sbjct: 24  EKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQSEGSNSDMYLVPAA 83

Query: 77  IFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ 136
           +F+DPFR+  N LV C+ +    +P  TN RH   +I     V  + PW+G+EQEYTL+ 
Sbjct: 84  MFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIMDM--VSNQHPWFGMEQEYTLMG 141

Query: 137 KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 196
            D   P                    ADKA+GRDIV++HY+ACLYAGI I+G N EVMP 
Sbjct: 142 TD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIAGTNAEVMPA 200

Query: 197 QWEFQVGPAVGISAGDQLWVARYILEDYRDC 227
           QWEFQ+GP  GI  GD LWVAR+IL  +R C
Sbjct: 201 QWEFQIGPCEGIDMGDHLWVARFIL--HRVC 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,127,398
Number of Sequences: 62578
Number of extensions: 291484
Number of successful extensions: 496
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)