Query 026354
Match_columns 240
No_of_seqs 145 out of 1532
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:38:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fky_A Glutamine synthetase; b 100.0 8.4E-62 2.9E-66 441.1 24.0 231 2-239 10-241 (370)
2 2d3a_A Glutamine synthetase; l 100.0 2.3E-60 8E-65 429.9 23.5 238 1-238 1-239 (356)
3 2ojw_A Glutamine synthetase; a 100.0 1.3E-58 4.5E-63 422.0 24.8 231 3-239 32-263 (384)
4 3qaj_A Glutamine synthetase; A 100.0 1.2E-54 4.1E-59 402.3 13.8 214 16-240 16-238 (444)
5 3ng0_A Glutamine synthetase; G 100.0 6.8E-53 2.3E-57 393.6 23.2 220 16-240 15-265 (473)
6 4hpp_A Probable glutamine synt 100.0 1.2E-52 4.3E-57 388.4 18.4 209 15-240 4-229 (443)
7 1f52_A Glutamine synthetase; A 100.0 2.2E-51 7.6E-56 383.2 21.6 219 17-240 13-262 (468)
8 4acf_A Glutamine synthetase 1; 100.0 3.9E-50 1.3E-54 376.5 20.9 220 16-240 24-277 (486)
9 2j9i_A Glutamate-ammonia ligas 100.0 5.1E-49 1.7E-53 362.8 5.0 197 17-237 13-221 (421)
10 3o6x_A Glutamine synthetase; t 100.0 5.5E-34 1.9E-38 272.4 10.5 179 55-240 128-335 (729)
11 2gwd_A Glutamate cysteine liga 96.1 0.04 1.4E-06 50.6 10.7 101 106-230 17-132 (449)
12 1r8g_A Hypothetical protein YB 93.3 0.31 1.1E-05 43.4 8.7 79 123-230 11-92 (372)
13 1nxi_A Conserved hypothetical 76.7 7.1 0.00024 29.5 6.5 90 110-230 21-113 (132)
14 1zpv_A ACT domain protein; str 67.1 5.1 0.00018 27.3 3.5 62 168-235 19-81 (91)
15 1v5s_A MAP/microtubule affinit 50.4 63 0.0021 24.1 7.2 62 169-230 40-120 (126)
16 3ose_A Serine/threonine-protei 46.4 37 0.0013 24.9 5.3 62 169-230 40-120 (120)
17 4hhu_A OR280; engineered prote 42.3 1E+02 0.0035 22.8 7.9 66 165-233 52-117 (170)
18 1q02_A Sequestosome 1; helical 41.0 24 0.00082 22.2 2.9 23 99-123 1-23 (52)
19 2nyi_A Unknown protein; protei 37.7 46 0.0016 26.2 5.0 63 170-235 105-174 (195)
20 3ig5_A Glutamate-cysteine liga 33.8 1.1E+02 0.0039 29.2 7.6 98 112-227 32-135 (692)
21 3ke2_A Uncharacterized protein 32.4 95 0.0033 22.8 5.4 20 105-124 45-64 (117)
22 2lqj_A Mg2+ transport protein; 22.6 87 0.003 21.8 3.7 59 169-230 21-80 (94)
23 2ns6_A Mobilization protein A; 22.1 85 0.0029 24.8 3.9 35 197-233 73-108 (185)
24 1u8s_A Glycine cleavage system 21.3 1.1E+02 0.0038 23.6 4.5 63 171-235 106-177 (192)
25 3t66_A Nickel ABC transporter 20.0 3.8E+02 0.013 23.8 8.4 34 169-202 344-383 (496)
No 1
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-62 Score=441.13 Aligned_cols=231 Identities=53% Similarity=1.042 Sum_probs=200.2
Q ss_pred hhhHHHhcCCCCCCCCeEEEEEEEEcCCCCceeeeeeeCCCCCCCCCCCCccccccCCCCCCCCCCCcEEEEceeeEecC
Q 026354 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDP 81 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PD~~~~lP 81 (240)
.++.+||+| ++.++++|+++|+|++| ++|||+++++.+.+.+++++.|+||||++++..++++|++|+||.++++|
T Consensus 10 ~~~~~~~~l---~~~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P 85 (370)
T 3fky_A 10 QILQKYLEL---DQRGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP 85 (370)
T ss_dssp --------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred HHHHHHhCc---ccCCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence 467889999 78999999999999999 99999999998888888888899999999888899999999999999999
Q ss_pred CCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHhhcCCeeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccC
Q 026354 82 FRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGV 161 (240)
Q Consensus 82 w~~~~~a~vl~d~~~~~G~p~~~~PR~~L~r~l~~l~~~Gl~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (240)
|+++++++|+||++++||+|++.|||++|+|++++++ |+++++|+|+|||||+.+. ++.+++..+.|.++++||+..
T Consensus 86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~ 162 (370)
T 3fky_A 86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV 162 (370)
T ss_dssp TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence 9986699999999999999999999999999999877 9999999999999998764 244666555778888998776
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeeccCCC
Q 026354 162 GADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRSQANS 239 (240)
Q Consensus 162 ~~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPKp~~ 239 (240)
+....+.++++++++++|+++||+|+++|||+|||||||++.|+++|+|||++++||++||+||++||+ +||||||+.
T Consensus 163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~ 241 (370)
T 3fky_A 163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLK 241 (370)
T ss_dssp STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSS
T ss_pred chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccC
Confidence 654445688999999999999999999999999999999999999999999999999999999999999 899999985
No 2
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=100.00 E-value=2.3e-60 Score=429.87 Aligned_cols=238 Identities=82% Similarity=1.449 Sum_probs=211.0
Q ss_pred ChhhHHHhcCCCCCCCCeEEEEEEEEcCCCCceeeeeeeCCCCCCCCCCCCccccccCCCCCCCCCCCcEEEEceeeEec
Q 026354 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (240)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PD~~~~l 80 (240)
||.+..+.+++||++.++.+|+++|+|++|+.+|||+++++.+.+.+++++.++||+|++++..++++|++|+||.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~vD~~g~~~r~k~~~~~~~~~~~~~~~g~~fdgss~~~~~~~~sD~~l~PDt~~~~ 80 (356)
T 2d3a_A 1 MACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (356)
T ss_dssp --CHHHHHTCCGGGTCSCEEEEEEEECTTSSCEEEEEEEESSCCCCGGGSCCEEEEGGGTTSSCSSSCEEEEEEEEEEEC
T ss_pred CCccchhhccCCCCCCCeEEEEEEEEcCCCCcccceEEECCcchhhHhhcCcceecccccccccCcCCcEEEEEEEEEEC
Confidence 45566677789988999999999999999999999999999887777777779999999988878899999999998899
Q ss_pred CCCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHhhcCCeeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCccc
Q 026354 81 PFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCG 160 (240)
Q Consensus 81 Pw~~~~~a~vl~d~~~~~G~p~~~~PR~~L~r~l~~l~~~Gl~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
||+++++++|+||++++||+|++.|||++|+|++++++++|+++++|+|+|||||+.+.+.+.+++..+.|.+.++||+.
T Consensus 81 P~~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~~~~~~g~p~~~g~y~~~ 160 (356)
T 2d3a_A 81 PFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCG 160 (356)
T ss_dssp TTTCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHSHHHHHHCCEEEEEEEEEEEETTTCCBTTSCTTSBCSCSSSCTTC
T ss_pred CcCCCCceEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCeeEEecceEEEEEecCCCcccccccCCCCCCCCCcCcC
Confidence 99875699999999999999999999999999999999999999999999999999764223344433466678888877
Q ss_pred CCcchHHHHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeeccCC
Q 026354 161 VGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRSQAN 238 (240)
Q Consensus 161 ~~~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPKp~ 238 (240)
.+.+..+.++++++++++|+++||+|+++|||+|||||||++.|+++|+|||++++||++||+||++||+ +||||||+
T Consensus 161 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~ 239 (356)
T 2d3a_A 161 IGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPI 239 (356)
T ss_dssp CSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEEECCSCSS
T ss_pred cccchHHHHHHHHHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEECCCcc
Confidence 7655444578888888889999999999999999999999999999999999999999999999999999 89999998
No 3
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=100.00 E-value=1.3e-58 Score=421.97 Aligned_cols=231 Identities=50% Similarity=1.001 Sum_probs=205.6
Q ss_pred hhHHHhcCCCCCCCCeEEEEEEEEcCCCCceeeeeeeCCCCCCCCCCCCccccccCCCCCCCCCCCcEEEEceeeEecCC
Q 026354 3 LLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPF 82 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~~~~~~~~~d~~~~g~~~~~~~D~~l~PD~~~~lPw 82 (240)
.+.+||+| ++.++.+|+++|+|++|+++|||+++++++.+.+++++.++||+|++++...+++|++|+||.++++||
T Consensus 32 ~l~~~l~~---~~~~~~~v~~~~~D~~G~~~R~K~ip~~~~~~~~~~~p~~~~dgss~~~~~~~~sD~~l~PDt~~~~Pw 108 (384)
T 2ojw_A 32 IKQVYMSL---PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPF 108 (384)
T ss_dssp HHHHHHTS---CCCSCEEEEEEEECTTSSCEEEEEEEESSCCSSGGGSCCEEEEGGGTTSSBTTBCEEEEEEEEEEECTT
T ss_pred HHHHHHhC---CCCCcEEEEEEEECCCCCeeeEEEEEHHHhhhhHhhCccccccCcccccccCCCCcEEEEeeEEEECCC
Confidence 46788988 477899999999999999999999999988777777888999999998778899999999999899999
Q ss_pred CCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHhhcCCeeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccCC
Q 026354 83 RRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVG 162 (240)
Q Consensus 83 ~~~~~a~vl~d~~~~~G~p~~~~PR~~L~r~l~~l~~~Gl~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
+++++++|+||++++||+|++.|||++|+|++++++ |+++++|+|+|||||+.+. .+.+++..+.|.+.++||+..+
T Consensus 109 ~~~~~a~v~cd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~~~~g~p~~~g~y~~~~~ 185 (384)
T 2ojw_A 109 RKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMGTDG-HPFGWPSNGFPGPQGPYYCGVG 185 (384)
T ss_dssp TCTTCEEEEEEEECTTSCBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEEC-CC-SBTTCCTTSCCSCSSSCTTCCS
T ss_pred CCCCeEEEEEEEECCCCCCCCcCHHHHHHHHHHHHh--CCEEEEEeeeEEEEEccCC-CcccccCCCccCCCCCCCcccc
Confidence 875699999999999999999999999999999998 8999999999999998764 1234554446778888887766
Q ss_pred cchHHHHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeeccCCC
Q 026354 163 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRSQANS 239 (240)
Q Consensus 163 ~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPKp~~ 239 (240)
.+..+.++++++++++|+++||+|+++|+|+|||||||++.|+++|+|||++++||++||+||++||+ +||||||+.
T Consensus 186 ~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~Gl~aTFmpKP~~ 263 (384)
T 2ojw_A 186 ADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIP 263 (384)
T ss_dssp TTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCSSC
T ss_pred cchHHHHHHHHHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccC
Confidence 55445678888888889999999999999999999999999999999999999999999999999999 899999983
No 4
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-54 Score=402.27 Aligned_cols=214 Identities=22% Similarity=0.291 Sum_probs=186.5
Q ss_pred CCeEEEEEEEEcCCCCceeeeeeeCCCCCCCCCCCCccccccCCC-CCCCCCCCcEEEEcee--eEecCCCCC--CeEEE
Q 026354 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRRG--NNILV 90 (240)
Q Consensus 16 ~~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD~--~~~lPw~~~--~~a~v 90 (240)
.+|++|+++|+|++| ++|+|++|++.+.+.+.+ .++||+|++ |+...+++|++|+||+ ++++||.++ ++|+|
T Consensus 16 ~~i~~v~l~~~D~~G-~~r~k~ip~~~~~~~~~~--G~~fdgssi~g~~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~a~v 92 (444)
T 3qaj_A 16 ENVKYIRLQFTDILG-TIKNVEIPVSQLGKALDN--KVMFDGSSIEGFVRIEESDMYLYPDLNTFVIFPWTAEKGKVARF 92 (444)
T ss_dssp HTCCEEEEEEECSSS-CEEEEEEEGGGHHHHHTT--CCEEETTTSTTSSCTTCCEEECCBCGGGCEEEHHHHHHHCEEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEeHHHHHHHHhC--CccccCccccCccCCCCCCEEEEEecCceEECccccCCCCeEEE
Confidence 379999999999999 999999999865322221 267899988 7777889999999999 999999874 59999
Q ss_pred EEEEECCCCCCCCCChHHHHHHHHHHHhhcCCe-eEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccCCc--chHH
Q 026354 91 MCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGA--DKAW 167 (240)
Q Consensus 91 l~d~~~~~G~p~~~~PR~~L~r~l~~l~~~Gl~-~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 167 (240)
+||++++||+|++.|||++|+|++++++++|++ +++|+|+|||||+.+++ +.+. ..+.+.++||+..+. ..++
T Consensus 93 ~cd~~~~dG~p~~~~pR~iLkr~~~~~~~~G~~~~~~g~E~EF~l~~~~~~---g~~~-~~~~~~~~y~~~~~~d~~~~~ 168 (444)
T 3qaj_A 93 ICDIYNPDGTPFEGDPRNNLKRILKEMEDLGFSDFNLGPEPEFFLFKLDEK---GEPT-LELNDKGGYFDLAPTDLGENC 168 (444)
T ss_dssp EBCCBCTTSCBCSSCHHHHHHHHHHHHHTTTCCEEEEEEEECEEEEEECSS---SCEE-EEESCCCCTTCCTTTSCCTTH
T ss_pred EEEEECCCCCCCCCChHHHHHHHHHHHHHcCCCeeeEEeceEEEEEecCCC---CCCC-CcCcCCCCccccCCCcchHHH
Confidence 999999999999999999999999999999999 99999999999997642 3222 145567788877664 3566
Q ss_pred HHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeeccCCCC
Q 026354 168 GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRSQANSG 240 (240)
Q Consensus 168 ~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPKp~~~ 240 (240)
+++|++. |+++||+|+++|||+|||||||++.|+++|+|||++++||++||+||++||+ +||||||+.+
T Consensus 169 ~~~i~~~----l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~ 238 (444)
T 3qaj_A 169 RRDIVLE----LEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLHATFMPKPLFG 238 (444)
T ss_dssp HHHHHHH----HHTTTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECCSCSSTT
T ss_pred HHHHHHH----HHHCCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCEEEEcCCcCCC
Confidence 7777766 8999999999999999999999999999999999999999999999999999 8999999854
No 5
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=100.00 E-value=6.8e-53 Score=393.62 Aligned_cols=220 Identities=20% Similarity=0.257 Sum_probs=183.2
Q ss_pred CCeEEEEEEEEcCCCCceeeeeeeCCCCCC-CCCCCCccccccCCC-CCCCCCCCcEEEEcee--eEecCCCCCCeEEEE
Q 026354 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVS-DPSKLPKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRRGNNILVM 91 (240)
Q Consensus 16 ~~~~~v~~~~~D~~G~~~R~K~~~~~~~~~-~~~~~~~~~~d~~~~-g~~~~~~~D~~l~PD~--~~~lPw~~~~~a~vl 91 (240)
.+|++|+++|+|++| ++|+|++|++.+.+ .+++ .++||||++ |+..++++|++|+||+ ++++||.++++|+|+
T Consensus 15 ~~i~~V~l~f~D~~G-~~r~k~ip~~~~~~~~~~~--G~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~a~v~ 91 (473)
T 3ng0_A 15 ENIKIIDLKFIDTPG-IWQHCSFYYDQLDENSFTE--GIPFDGSSIRGWKAINESDMCMVPDPNTATIDPFCKEPTLSMI 91 (473)
T ss_dssp TTCCEEEEEEECSSS-CEEEEEEEGGGCCGGGGTT--CEEEETTSSTTSCCGGGCEEEEEECGGGCEECTTCSSCEEEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEEeHHHHHHHHHhC--CCccccccccccccCCCCcEEEEeecCccEECCcCCCCcEEEE
Confidence 389999999999999 99999999987643 2221 277999988 7777789999999999 999999986699999
Q ss_pred EEEECC-CCCCCCCChHHHHHHHHHHHhhcCC--eeEEeeeeeEEEEecCC-------------CCCCCCCC--------
Q 026354 92 CDAYTP-AGEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDV-------------KWPLGWPI-------- 147 (240)
Q Consensus 92 ~d~~~~-~G~p~~~~PR~~L~r~l~~l~~~Gl--~~~~g~E~EF~L~~~~~-------------~~~~~~~~-------- 147 (240)
||++++ +|+|++.|||++|+|++++++++|+ ++++|+|+|||||+... ..+.+|..
T Consensus 92 cd~~~~~~g~p~~~~pR~iLkr~~~~~~~~G~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (473)
T 3ng0_A 92 CSIKEPRTGEWYNRDPRTIAAKAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGGN 171 (473)
T ss_dssp EEEECTTTSSBCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTCGGGTTCCCTTCC
T ss_pred EEEeECCCCCCCCCChHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeecccccccccccccccccccccccccccccCC
Confidence 999998 9999999999999999999999876 89999999999998521 00011111
Q ss_pred -CCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHcCCeEeeeecCcC-CCeeeeecCCChhhHHHHHHHHHHHHHHHHH
Q 026354 148 -GGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVM-PGQWEFQVGPAVGISAGDQLWVARYILEDYR 225 (240)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~g-pGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA 225 (240)
...+.+.++||...+.+. ..++++++.++|+++||+|+++|||+| ||||||++.|+++|+|||++++||++||+||
T Consensus 172 ~g~~~~~~~~y~~~~~~d~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA 249 (473)
T 3ng0_A 172 LGYKPGYKQGYFPVAPTDT--AQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKLVNSADNLMIYKYVIKNVA 249 (473)
T ss_dssp CCCCCCTTCCSSCCTTTCC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCccccccCccch--hHHHHHHHHHHHHHCCCCeEEeecCcCCCCceEEEccCCCHHHHHHHHHHHHHHHHHHH
Confidence 012445667776665443 345555555569999999999999999 9999999999999999999999999999999
Q ss_pred HHcCC-ceeeccCCCC
Q 026354 226 DCWSC-AFFRSQANSG 240 (240)
Q Consensus 226 ~~~Gl-aTFmPKp~~~ 240 (240)
++||+ +||||||+.+
T Consensus 250 ~~~G~~aTFmpKP~~~ 265 (473)
T 3ng0_A 250 KKYGKTVTFMPKPIFN 265 (473)
T ss_dssp HHTTCEEECCSCSSTT
T ss_pred HHhCCEEEEcCcccCC
Confidence 99999 8999999853
No 6
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.2e-52 Score=388.44 Aligned_cols=209 Identities=14% Similarity=0.094 Sum_probs=174.5
Q ss_pred CCCeEEEEEEEEcCCCCceeeeeeeCCCCCCCCCCCCccccccC--CC-CCC-------CCCCCcEEEEcee--eEecCC
Q 026354 15 STDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGS--ST-GQA-------PGEDSEVILYPQA--IFKDPF 82 (240)
Q Consensus 15 ~~~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~~~~~~~~~d~~--~~-g~~-------~~~~~D~~l~PD~--~~~lPw 82 (240)
-.+|++|+++|+|++| ++|+|++|++.+.+.+++ .++||++ ++ ++. -.+++|++|+||+ ++++||
T Consensus 4 ~~~v~~v~l~~~D~~G-~~r~k~vp~~~~~~~~~~--G~~f~~s~~~~~~~~~~~~~~~~~~~~D~~l~PD~~T~~~~Pw 80 (443)
T 4hpp_A 4 LQPVRLVSFVTTDLAG-ITRGRSLPLATLEEQLAS--GCGWVPANSSLTPQDLIDESSPWGSHGDLRLLPDPNSRVRVEQ 80 (443)
T ss_dssp CCCCCEEEEEEECTTS-CEEEEEEEGGGHHHHHTT--CEEECGGGGGCCTTSCCCTTCSCSSSCCEEEEECGGGCEEECC
T ss_pred CCCCCEEEEEEECCCC-CEEEEEEEHHHHHHHHhC--CcccCchhheeeccCccccccCCCCCCCEEEEEcccceEECCc
Confidence 4689999999999999 999999999876432221 1444442 11 111 1356999999999 999999
Q ss_pred CCC----CeEEEEEEEECCCCCCCCCChHHHHHHHHHHHhhcCCeeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCc
Q 026354 83 RRG----NNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYY 158 (240)
Q Consensus 83 ~~~----~~a~vl~d~~~~~G~p~~~~PR~~L~r~l~~l~~~Gl~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
.++ ++|+|+||++++||+|++.|||++|+|++++++++|+++++|+|+|||||+. .|.+.++||
T Consensus 81 ~~~~~~~~~a~v~cd~~~~dG~p~~~~pR~~L~r~~~~~~~~G~~~~~g~E~EF~l~~~------------~p~~~~~~y 148 (443)
T 4hpp_A 81 GPDAAAPALDYLHGNLVETDGTPWPACPRSLLRAEVERYRDSGLQVIAAFEHEFSLLGL------------PGERPAAAF 148 (443)
T ss_dssp CSSTTSCCEEEEEEEEECTTSCBCTTCHHHHHHHHHHHHHHTTEEEEEEEEEEEEEECC------------CSSSCCCTT
T ss_pred ccccCCCCeEEEEEEEECCCCCCCCCChHHHHHHHHHHHHHcCCeEEEEeeeEEEEecc------------ccCCCCccC
Confidence 972 5999999999999999999999999999999999999999999999999962 233567788
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeeccC
Q 026354 159 CGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRSQA 237 (240)
Q Consensus 159 ~~~~~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPKp 237 (240)
+..+.+. ..++++++.++|+++||+|+++|||+|||||||++.|+++|+|||++++||++||+||++||+ +||||||
T Consensus 149 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP 226 (443)
T 4hpp_A 149 SLQAQRA--AGQFPGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCFAPLP 226 (443)
T ss_dssp CHHHHHH--TTTHHHHHHHHHHHTTCCEEEEEECSSTTEEEEEECCEETHHHHHHHHHHHHHHHHHHHHHTCEEECSSSS
T ss_pred CCCcccc--hHHHHHHHHHHHHHCCCCeEEeecCCCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 7665432 344555555559999999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCC
Q 026354 238 NSG 240 (240)
Q Consensus 238 ~~~ 240 (240)
+.+
T Consensus 227 ~~~ 229 (443)
T 4hpp_A 227 APG 229 (443)
T ss_dssp STT
T ss_pred CCC
Confidence 854
No 7
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=100.00 E-value=2.2e-51 Score=383.24 Aligned_cols=219 Identities=19% Similarity=0.262 Sum_probs=184.2
Q ss_pred CeEEEEEEEEcCCCCceeeeeeeCCCCCCCCCCC-CccccccCCC-CCCCCCCCcEEEEcee--eEecCCCCCCeEEEEE
Q 026354 17 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKL-PKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRRGNNILVMC 92 (240)
Q Consensus 17 ~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~~~~-~~~~~d~~~~-g~~~~~~~D~~l~PD~--~~~lPw~~~~~a~vl~ 92 (240)
+|++|+++|+|++| ++|+|++|++.+.+.+ + ..++||+|++ |+...+++|++|+||+ ++++||.++++++|+|
T Consensus 13 ~i~~v~~~~~D~~G-~~r~k~vp~~~~~~~~--~~~g~~fdgss~~g~~~~~~sD~~l~PD~~T~~~~Pw~~~~~~~v~~ 89 (468)
T 1f52_A 13 EVKFVDLRFTDTKG-KEQHVTIPAHQVNAEF--FEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRC 89 (468)
T ss_dssp TCCEEEEEEECTTS-CEEEEEEEGGGCCHHH--HHHCEEEEGGGSTTSCCSSCCEEEEEECGGGCEECSSCSSCEEEEEE
T ss_pred CCCEEEEEEECCCC-CEEEEEEEHHHHHHHH--hhCceeeccccccccccCCCCCEEEEEecCCcEEccccCCCceEEEE
Confidence 89999999999999 9999999998653210 2 1378999887 7777889999999999 9999998756999999
Q ss_pred EEECC-CCCCCCCChHHHHHHHHHHHhhcCC--eeEEeeeeeEEEEecCC-----C--------CCCCCCC---------
Q 026354 93 DAYTP-AGEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDV-----K--------WPLGWPI--------- 147 (240)
Q Consensus 93 d~~~~-~G~p~~~~PR~~L~r~l~~l~~~Gl--~~~~g~E~EF~L~~~~~-----~--------~~~~~~~--------- 147 (240)
|++++ +|+|++.|||++|+|++++++++|+ ++++|+|+|||||+.+. + ...++..
T Consensus 90 d~~~~~~G~p~~~~pR~ilk~~~~~l~~~G~~~~~~~G~E~EFfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (468)
T 1f52_A 90 DILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNK 169 (468)
T ss_dssp EEECTTTCCCCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCC
T ss_pred EEEeCCCCCcCCCCHHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeccccccCCccccccccccccccCCCccccccCC
Confidence 99999 7999999999999999999999999 89999999999998531 0 0011110
Q ss_pred CCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHcCCeEeeeecCcCCC-eeeeecCCChhhHHHHHHHHHHHHHHHHHH
Q 026354 148 GGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPG-QWEFQVGPAVGISAGDQLWVARYILEDYRD 226 (240)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~gpG-Q~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~ 226 (240)
...+.+.++||+..+.+. ..++.+++++.|+++||+|++.|||+||| ||||++.|+++++|||++++||++||+||+
T Consensus 170 g~~~~~~~~Y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~apggQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~ 247 (468)
T 1f52_A 170 GHRPGVKGGYFPVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAH 247 (468)
T ss_dssp CCCCCTTCCSSBCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCCcccc--HHHHHHHHHHHHHHCCCCeEEeecCCCCceeEEEeccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 013556678887776543 45666666666999999999999999996 999999999999999999999999999999
Q ss_pred HcCC-ceeeccCCCC
Q 026354 227 CWSC-AFFRSQANSG 240 (240)
Q Consensus 227 ~~Gl-aTFmPKp~~~ 240 (240)
+||+ +||||||+.+
T Consensus 248 ~hGl~atFmpKP~~g 262 (468)
T 1f52_A 248 RFGKTATFMPKPMFG 262 (468)
T ss_dssp HTTCEEECCSCSSTT
T ss_pred HhCCEEEEeCCCCCC
Confidence 9999 8999999853
No 8
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=100.00 E-value=3.9e-50 Score=376.50 Aligned_cols=220 Identities=20% Similarity=0.225 Sum_probs=180.5
Q ss_pred CCeEEEEEEEEcCCCCceeeeeeeCCCCCCCC-CCCCccccccCCC-CCCCCCCCcEEEEcee--eEecCCCCCCeEEEE
Q 026354 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDP-SKLPKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRRGNNILVM 91 (240)
Q Consensus 16 ~~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~-~~~~~~~~d~~~~-g~~~~~~~D~~l~PD~--~~~lPw~~~~~a~vl 91 (240)
-+|++|+++|+|++| ++|+|++|++.+.+.+ ++ .++||||++ |+..++++|++|+||+ ++++||.++.++.|+
T Consensus 24 ~~I~~V~l~f~D~~G-~~r~k~ip~~~~~~~~~~~--G~~fdgssi~G~~~~~~sD~~l~PD~~T~~~~Pw~~~~~~~v~ 100 (486)
T 4acf_A 24 EKVEYVDVRFCDLPG-IMQHFTIPASAFDKSVFDD--GLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNIN 100 (486)
T ss_dssp TTCCEEEEEEECSSS-CEEEEEEEGGGCSHHHHHT--CEEEEGGGSTTSCCGGGCEEEEEECGGGCEECSSCSSCEEEEE
T ss_pred CCCcEEEEEEECCCC-cEEEEEEEHHHHHHHHHHC--CCeeecccccccccCCCCCEEEEEccceeEECCcCCCccEEEE
Confidence 489999999999999 9999999998663221 11 267899998 8888889999999999 999999997788999
Q ss_pred EEEECC-CCCCCCCChHHHHHHHHHHHhhcC--CeeEEeeeeeEEEEecCC-----C-------------------CCCC
Q 026354 92 CDAYTP-AGEPIPTNKRHAAAKIFSHSDVVA--EEPWYGIEQEYTLLQKDV-----K-------------------WPLG 144 (240)
Q Consensus 92 ~d~~~~-~G~p~~~~PR~~L~r~l~~l~~~G--l~~~~g~E~EF~L~~~~~-----~-------------------~~~~ 144 (240)
|+++++ +|+|++.|||++|+|++++++++| +++++|+|+|||||+... . ...+
T Consensus 101 ~~~~d~~~g~P~~~~pR~iLk~~~~~~~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g 180 (486)
T 4acf_A 101 FFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADG 180 (486)
T ss_dssp EEEECTTTCCBCTTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTS
T ss_pred EEEeeCCCCCCCCCCchHHHHHHHHHHHHcCCcceecccceeEEEEeccccccccccCCcccCCccccccCCCCcccCCC
Confidence 999985 899999999999999999999865 588899999999997421 0 0011
Q ss_pred CCCCCC-CCCCCCCcccCCcchHHHHHHHHHHHHHHHHcCCeEeeeecCcCC-CeeeeecCCChhhHHHHHHHHHHHHHH
Q 026354 145 WPIGGY-PGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMP-GQWEFQVGPAVGISAGDQLWVARYILE 222 (240)
Q Consensus 145 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~GI~ve~~h~E~gp-GQ~Ei~l~~~~~l~aAD~~~~~r~~ik 222 (240)
.+..++ +....+||...+.+. ..++++++.+.|+++||+|+++|||+|| |||||++.|+++|+|||++++||++||
T Consensus 181 ~p~~~~~~~~~~~y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~gp~GQ~Ei~~~~~~~l~aAD~~~~~k~~vk 258 (486)
T 4acf_A 181 SPNRGYKVRHKGGYFPVAPNDQ--YVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIK 258 (486)
T ss_dssp CBCCCCCBCTTCCSSBCTTTSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCccccCCcchh--HHHHHHHHHHHHHhCCceEEeeeeeeeccceeEEeccCcchhhhhhHHHHHHHHHH
Confidence 111122 223455666555443 3456666666699999999999999998 999999999999999999999999999
Q ss_pred HHHHHcCC-ceeeccCCCC
Q 026354 223 DYRDCWSC-AFFRSQANSG 240 (240)
Q Consensus 223 ~vA~~~Gl-aTFmPKp~~~ 240 (240)
+||++||+ +||||||+.+
T Consensus 259 ~vA~~~G~~aTFmpKP~~~ 277 (486)
T 4acf_A 259 NTAWQNGKTVTFMPKPLFG 277 (486)
T ss_dssp HHHHHTTCEEECCSCSSTT
T ss_pred HHHHHcCCeEEEeeccccC
Confidence 99999999 8999999854
No 9
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=100.00 E-value=5.1e-49 Score=362.75 Aligned_cols=197 Identities=14% Similarity=0.145 Sum_probs=165.2
Q ss_pred CeEEEEEEEEcCCCCceeeeeeeCCCCCCCCCCCCccccccCC-C-CCC-CCCCCcEEEEcee--eEecCC-CCCCeEEE
Q 026354 17 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSS-T-GQA-PGEDSEVILYPQA--IFKDPF-RRGNNILV 90 (240)
Q Consensus 17 ~~~~v~~~~~D~~G~~~R~K~~~~~~~~~~~~~~~~~~~d~~~-~-g~~-~~~~~D~~l~PD~--~~~lPw-~~~~~a~v 90 (240)
+|++|+++|+|++| ++|+|++|++.+ +.+.+ .++||+++ + ++. .+..+|++|+||+ ++++|| .+ ++++|
T Consensus 13 ~i~~v~~~~~D~~G-~~r~k~ip~~~~-~~~~~--g~~~~gs~~~~~~~~~~~~sD~~l~PD~~T~~~~Pw~~~-~~a~v 87 (421)
T 2j9i_A 13 AAAFVRFEATDAAG-ASRSKSIPAQFF-EKVIH--ARGYLEDGEVNAGAAGAAASDIVLMPELSTAAVAAAAAA-ATAAV 87 (421)
T ss_dssp TCSEEEEEEECSSS-CEEEEEEEGGGC-CTTHH--HHCEEECGGGSTTTCCTTCCCEEEEECSSCCEECTTSSS-SEEEE
T ss_pred CCCEEEEEEECCCC-CEEEEEEEHHHH-HHhhc--CCeeecccCcccccccCCCCCEEEEEecCceEEcCcCCC-CeEEE
Confidence 89999999999999 999999999876 33321 27888874 4 454 4556999999999 999999 66 69999
Q ss_pred EEEEECCCCCCCCCChHHHHHHHHHHHhhcCC--eeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccCCc--chH
Q 026354 91 MCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGA--DKA 166 (240)
Q Consensus 91 l~d~~~~~G~p~~~~PR~~L~r~l~~l~~~Gl--~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 166 (240)
+|| ||+|++.|||++|+|++++++++|+ ++++|+|+|||||+.+.. +.+ ...||...+. ..+
T Consensus 88 ~cd----dG~P~~~~pR~iLk~~~~~~~~~G~~d~~~~g~E~EF~l~~~~~~-~~~---------~p~y~~~~~~~~~~~ 153 (421)
T 2j9i_A 88 ICD----GGAAAAASPRYIARAALAQLQAAGAAAGLLSAFIADFCIFGVPEV-INS---------KTISFPASTTAAAAD 153 (421)
T ss_dssp EEE----EESSCSCCHHHHHHHHHHHHHHTTSCSEECCEECCCCEEESCCEE-EEC---------SSCEEEECCCTTCTT
T ss_pred EcC----CCCCCCCChHHHHHHHHHHHHhcCCccCceEEeeeEEEEEecCCC-CCC---------CCCcCCCCcccchhH
Confidence 999 7999999999999999999999999 999999999999986531 001 0124433332 233
Q ss_pred HHHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCCh-hhHHHHHHHHHHHHHHHHHHHcCC-ceeeccC
Q 026354 167 WGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAV-GISAGDQLWVARYILEDYRDCWSC-AFFRSQA 237 (240)
Q Consensus 167 ~~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~-~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPKp 237 (240)
+++++++. |+ +||+|++.|||+|||||||++.|.+ +++|||++++||++||+||++||+ +||||||
T Consensus 154 ~~~~i~~~----l~-~Gi~ve~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk~vA~~~G~~atFmpKP 221 (421)
T 2j9i_A 154 QPQEAAAG----GA-AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAAAA 221 (421)
T ss_dssp GGGSCCTT----CC-CSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEEECCTTS
T ss_pred HHHHHHHH----Hh-CCCCeEEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCc
Confidence 44455544 99 9999999999999999999999999 999999999999999999999999 8999999
No 10
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=100.00 E-value=5.5e-34 Score=272.44 Aligned_cols=179 Identities=17% Similarity=0.166 Sum_probs=121.3
Q ss_pred cccCCC---CCCCCCCCcEEEEcee---eEecCCCCCCeEEEEEEEECCCCC------CCCCChHHHHHHHHHHHhhcCC
Q 026354 55 YDGSST---GQAPGEDSEVILYPQA---IFKDPFRRGNNILVMCDAYTPAGE------PIPTNKRHAAAKIFSHSDVVAE 122 (240)
Q Consensus 55 ~d~~~~---g~~~~~~~D~~l~PD~---~~~lPw~~~~~a~vl~d~~~~~G~------p~~~~PR~~L~r~l~~l~~~Gl 122 (240)
-|+||+ |+.....+|+++.||+ .++.| +|..+.|.+++.+|+ |+..|||++++++++.|+..|.
T Consensus 128 ~DgSS~p~gG~r~t~earg~~~~D~ts~afi~~----~TL~IP~~f~s~~Ge~ld~ktPL~rsPR~ilk~A~~~Lk~~G~ 203 (729)
T 3o6x_A 128 PDASSFPNGGIRNTFEARGYTAWDGSSPAFVVD----TTLCIPTIFISYTGEALDYKTPLLKALAAVDKAATEVCQLFDK 203 (729)
T ss_dssp --------------------CCBCSSSCCEEET----TEEECCBCCC----CCCBSHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CccccCCCccchhhhhccCceecCCCCCeEEeC----CeEEEEEEEEeCCCCcCCCCCchhhCHHHHHHHHHHHHHHcCC
Confidence 489888 5556788999999998 55665 499999999987786 5777999999999999999997
Q ss_pred -----eeEEeeeeeEEEEecCC--CCCC----CCCCCCCCCCCC-----CCcccCCcchHHHHHHHHHHHHHHHHcCCeE
Q 026354 123 -----EPWYGIEQEYTLLQKDV--KWPL----GWPIGGYPGPQG-----PYYCGVGADKAWGRDIVDSHYKACLYAGINI 186 (240)
Q Consensus 123 -----~~~~g~E~EF~L~~~~~--~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~~l~~~GI~v 186 (240)
++.+|+|+|||||++.. .++. |+...+..+..+ +||...+ +. ..++++++.+.|+++||+|
T Consensus 204 d~~~v~~~~G~E~EFFLfd~~~~~~r~dl~~tGrtl~G~~P~kgq~l~d~Yf~~~p-d~--~~~~~~di~~~L~~~GI~v 280 (729)
T 3o6x_A 204 NITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAKDQQLEDHYFGSIP-PR--VTAFMKELEIECHKLGIPV 280 (729)
T ss_dssp CCCCEEEEEEEEECEEEEEHHHHHSCTTHHHHSSCSCCCC--------------CC-HH--HHHHHHHHHHHHHHHTCCE
T ss_pred CCccceEEEEeccEEEEEecchhccCcccccccccccCCCCCCCCCCCCccCCCCc-hh--HHHHHHHHHHHHHHCCCCe
Confidence 69999999999999742 1111 111011222233 6665544 22 3344444445599999999
Q ss_pred eeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeeccCCCC
Q 026354 187 SGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRSQANSG 240 (240)
Q Consensus 187 e~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmPKp~~~ 240 (240)
++.|||+|||||||++.|.++++|||+++++|++||+||++||+ +||||||+.|
T Consensus 281 e~~H~EvaPGQ~EI~~~~~~al~AAD~~~l~K~vvK~VA~~hGl~ATFMPKP~~g 335 (729)
T 3o6x_A 281 KTRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFHEKPYNG 335 (729)
T ss_dssp EEECBCSSTTEECCEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECSSCSSTT
T ss_pred EEeecCCCCCceEeccCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCC
Confidence 99999999999999999999999999999999999999999999 8999999854
No 11
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=96.05 E-value=0.04 Score=50.61 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHhhcCCeeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHcCC-
Q 026354 106 KRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGI- 184 (240)
Q Consensus 106 PR~~L~r~l~~l~~~Gl~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~GI- 184 (240)
.+..|.+.++.-...+=...+|+|.||++++.+. +. + .++ . ...++++.+.+ ..|.
T Consensus 17 ~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~----~~-----~---~~~-~-------~~~~lL~~l~~---~~g~~ 73 (449)
T 2gwd_A 17 TREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNT----LR-----P---MKY-D-------QIAELLNSIAE---RFEWE 73 (449)
T ss_dssp CHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTT----CC-----B---CCH-H-------HHHHHHHHHHH---HHTCE
T ss_pred CHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCC----CC-----C---CCh-H-------HHHHHHHHHHH---hhccC
Confidence 3444444444322224468999999999999753 11 1 111 0 13566666432 2342
Q ss_pred ------eE-------eeeecCcCCCeeeeecCCC-hhhHHHHHHHHHHHHHHHHHHHcCC
Q 026354 185 ------NI-------SGINGEVMPGQWEFQVGPA-VGISAGDQLWVARYILEDYRDCWSC 230 (240)
Q Consensus 185 ------~v-------e~~h~E~gpGQ~Ei~l~~~-~~l~aAD~~~~~r~~ik~vA~~~Gl 230 (240)
.+ ..+..|.+ +|+|++..+. +.-++.+++...+..++++|.++|+
T Consensus 74 ~~~~~~~~~~l~~~~~~i~~E~~-~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~ 132 (449)
T 2gwd_A 74 KVMEGDKIIGLKQGKQSISLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGI 132 (449)
T ss_dssp EEEETTEEEEEEETTEEEEECTT-CCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred ccccccccccccCCCceEEecCC-ceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11 12777776 9999999996 5677999999999999999999997
No 12
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=93.31 E-value=0.31 Score=43.36 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=58.0
Q ss_pred eeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHcCCeE--eeeecCcCCCeeee
Q 026354 123 EPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINI--SGINGEVMPGQWEF 200 (240)
Q Consensus 123 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~GI~v--e~~h~E~gpGQ~Ei 200 (240)
...+|+|.|+++++.+. +. +. ++ . .++++. .+=.+ ..+.+|..-+|.|+
T Consensus 11 ~~~~GiE~E~~~Vd~~~----g~-----~~---~~------~----~~~l~~-------~~~~~~~~~it~E~~~~qlEl 61 (372)
T 1r8g_A 11 PFTLGIELEMQVVNPPG----YD-----LS---QD------S----SMLIDA-------VKNKITAGEVKHDITESMLEL 61 (372)
T ss_dssp TTCEEEEEEEEEEETTT----TE-----EC---SC------C----HHHHTT-------TSSSCSSSEEEECSSSSEEEE
T ss_pred CCceEEEEEEeeECCCC----CC-----cC---cc------H----HHHHHh-------chhcccCCcccchhhccEEEe
Confidence 45899999999999763 11 11 11 0 133322 22111 46899999999999
Q ss_pred ecCCC-hhhHHHHHHHHHHHHHHHHHHHcCC
Q 026354 201 QVGPA-VGISAGDQLWVARYILEDYRDCWSC 230 (240)
Q Consensus 201 ~l~~~-~~l~aAD~~~~~r~~ik~vA~~~Gl 230 (240)
+..+. +.-++.+.+...+..++++|.++|.
T Consensus 62 ~t~p~~~~~e~~~~L~~~~~~~~~~a~~~g~ 92 (372)
T 1r8g_A 62 ATDVCRDINQAAGQFSAMQKVVLQAATDHHL 92 (372)
T ss_dssp ECCSBSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99996 6677999999999999999999987
No 13
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=76.74 E-value=7.1 Score=29.48 Aligned_cols=90 Identities=11% Similarity=-0.025 Sum_probs=61.3
Q ss_pred HHHHHHHHhhcCCeeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHcCCeEeee
Q 026354 110 AAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGI 189 (240)
Q Consensus 110 L~r~l~~l~~~Gl~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~GI~ve~~ 189 (240)
=.++++.|.+.|-.+..-.++||++.=.+. .-+..+... +.+.|..|+..
T Consensus 21 n~~Vl~~L~e~Gddl~~~r~IEH~~~F~de--------------------------~~~e~~a~~----~~~~Gy~v~~~ 70 (132)
T 1nxi_A 21 TRDIIQALLEDGSDPDALYEIEHHLFAEDF--------------------------DKLEKAAVE----AFKMGFEVLEA 70 (132)
T ss_dssp HHHHHHHHHHHTCCTTSCEEEEEEEEESCH--------------------------HHHHHHHHH----HHHHTCCCBCC
T ss_pred HHHHHHHHHhCCCCcCCCeEEEEEEEeCCH--------------------------HHHHHHHHH----HHHCCCEEEec
Confidence 356888899999999999999999974332 113444555 66789988632
Q ss_pred e-c--CcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC
Q 026354 190 N-G--EVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC 230 (240)
Q Consensus 190 h-~--E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl 230 (240)
- . |-|-..|++.+.....+...+=.-...++.+ +|+++|-
T Consensus 71 ~~~e~e~g~~~~~~~i~~~~~l~~~~I~~~~~~L~~-lA~~~~G 113 (132)
T 1nxi_A 71 EETEDEDGNKLLCFDATMQSALDAKLIDEQVEKLVN-LAEKFDI 113 (132)
T ss_dssp CCBCCSSCSSBEEEEEEEEECSCHHHHHHHHHHHHH-HHHHHTC
T ss_pred ccccCCCCceeEEEEEEEeccCCHHHHHHHHHHHHH-HHHHhCc
Confidence 2 2 3333479999988888876665555555555 6666653
No 14
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=67.07 E-value=5.1 Score=27.28 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeec
Q 026354 168 GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRS 235 (240)
Q Consensus 168 ~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmP 235 (240)
+.++... +.+.|++|..++.....|.+.+.+.-.- ...+++-.++..++.++.+.|+ ..+.|
T Consensus 19 la~vt~~----la~~~~NI~~i~~~~~~~~~~~~i~v~~--~~~~~l~~l~~~L~~~~~~~~~~~~~~~ 81 (91)
T 1zpv_A 19 VAGVSGK----IAELGLNIDDISQTVLDEYFTMMAVVSS--DEKQDFTYLRNEFEAFGQTLNVKINIQS 81 (91)
T ss_dssp HHHHHHH----HHHTTCEEEEEEEEEETTEEEEEEEEEE--SSCCCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHH----HHHcCCCEEEEEeEEEcCEEEEEEEEEe--CCCCCHHHHHHHHHHHHHHcCCEEEEee
Confidence 4455544 7789999999888766688777765421 1123455677778999999998 55543
No 15
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=50.42 E-value=63 Score=24.05 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCeEee--------eecCc---CCCeeeeecCCChhh--------HHHHHHHHHHHHHHHHHHHcC
Q 026354 169 RDIVDSHYKACLYAGINISG--------INGEV---MPGQWEFQVGPAVGI--------SAGDQLWVARYILEDYRDCWS 229 (240)
Q Consensus 169 ~~i~~~l~~~l~~~GI~ve~--------~h~E~---gpGQ~Ei~l~~~~~l--------~aAD~~~~~r~~ik~vA~~~G 229 (240)
.+|+.+|++.|++.||..+. .|... ..=||||.+---+.+ +..-+.+.||.++.+|..+..
T Consensus 40 ~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~GI~fKRisGd~w~YK~lc~~IL~eLk 119 (126)
T 1v5s_A 40 GDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELK 119 (126)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEEEEEEecCCCceeEEEeeccCchhHHHHHHHHHHHHHh
Confidence 57778888889999998886 23211 124899987543211 112256899999999999887
Q ss_pred C
Q 026354 230 C 230 (240)
Q Consensus 230 l 230 (240)
+
T Consensus 120 L 120 (126)
T 1v5s_A 120 L 120 (126)
T ss_dssp C
T ss_pred c
Confidence 6
No 16
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=46.42 E-value=37 Score=24.90 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCeEeeeec-------C----cCCCeeeeecCCChhh--H------HHHHHHHHHHHHHHHHHHcC
Q 026354 169 RDIVDSHYKACLYAGINISGING-------E----VMPGQWEFQVGPAVGI--S------AGDQLWVARYILEDYRDCWS 229 (240)
Q Consensus 169 ~~i~~~l~~~l~~~GI~ve~~h~-------E----~gpGQ~Ei~l~~~~~l--~------aAD~~~~~r~~ik~vA~~~G 229 (240)
.+|+.+|.+.|.++||.++.-.. + .+.-|||+.+---+.+ - .+=+.+.||.++..|..+..
T Consensus 40 ~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l~gV~~kRi~Gd~~~yk~lc~~il~~L~ 119 (120)
T 3ose_A 40 NDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELK 119 (120)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTEEEEEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCceeEEEEecCCCHHHHHHHHHHHHHHhc
Confidence 67788888889999998887432 1 1235788876433211 1 22256789999999888765
Q ss_pred C
Q 026354 230 C 230 (240)
Q Consensus 230 l 230 (240)
|
T Consensus 120 L 120 (120)
T 3ose_A 120 L 120 (120)
T ss_dssp C
T ss_pred C
Confidence 3
No 17
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=42.30 E-value=1e+02 Score=22.83 Aligned_cols=66 Identities=8% Similarity=-0.013 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeeeecCcCCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCCcee
Q 026354 165 KAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFF 233 (240)
Q Consensus 165 ~~~~~~i~~~l~~~l~~~GI~ve~~h~E~gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~GlaTF 233 (240)
+..+.++..+..+...+.+|.|....--+|.|-.-|.|.-+| |+|-..+ +|++||+.-+=.|-.|+
T Consensus 52 eqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gdd-lea~eka--lkemirqarkfagtvty 117 (170)
T 4hhu_A 52 EQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDD-LEALEKA--LKEMIRQARKFAGTVTY 117 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSC-HHHHHHH--HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCc-HHHHHHH--HHHHHHHHHhhcceEEE
Confidence 455778888877778899999999999999999999997554 5555544 68888876555554554
No 18
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=41.04 E-value=24 Score=22.20 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=18.9
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCe
Q 026354 99 GEPIPTNKRHAAAKIFSHSDVVAEE 123 (240)
Q Consensus 99 G~p~~~~PR~~L~r~l~~l~~~Gl~ 123 (240)
|.|-..||| +...+.++..||++
T Consensus 1 ~~p~~~D~r--l~~al~qMl~MGF~ 23 (52)
T 1q02_A 1 GSPPEADPR--LIESLSQMLSMGFS 23 (52)
T ss_dssp CCCTTSCHH--HHHHHHHHHTTTCC
T ss_pred CCCCCcChH--HHHHHHHHHHcCCC
Confidence 567788898 77888888899987
No 19
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=37.70 E-value=46 Score=26.20 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCeEeeeecCcC------CCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeec
Q 026354 170 DIVDSHYKACLYAGINISGINGEVM------PGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRS 235 (240)
Q Consensus 170 ~i~~~l~~~l~~~GI~ve~~h~E~g------pGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmP 235 (240)
.|+.++.+.|.+.|++|..++.-.. .+.|-+.+.-.-+ ...+ -.+|..+..+|.+.|+ ..|.|
T Consensus 105 Giva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~--~~l~~~l~~~a~~l~~di~~~~ 174 (195)
T 2nyi_A 105 GIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY--QEVVTALSRVEEEFGVDIDLEE 174 (195)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH--HHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc--HHHHHHHHHHHHHcCeEEEEEE
Confidence 4555556668899999988776543 4777776665422 2233 5788889999999999 67765
No 20
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Probab=33.79 E-value=1.1e+02 Score=29.23 Aligned_cols=98 Identities=15% Similarity=-0.012 Sum_probs=53.6
Q ss_pred HHHHHHhh-cCCeeEEeeeeeEEEEecCCCCCCCCCCCCCCCCCCCCcccCCcchHHHHHHHHHHHH-HHHHcCCeEeee
Q 026354 112 KIFSHSDV-VAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYK-ACLYAGINISGI 189 (240)
Q Consensus 112 r~l~~l~~-~Gl~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~l~~~GI~ve~~ 189 (240)
.+..++++ .|-.++.|-|+|++|++-+.+..... +. ... .+|++.+.+ .+....-..-.+
T Consensus 32 ~i~~~~k~r~~d~l~WGDEIEy~LV~~d~~~k~ar-----ls---------l~~----~eIL~~L~~~~~~~~~~~~p~~ 93 (692)
T 3ig5_A 32 YIFQAAGKRDNDPLFWGDELEYMVVDFDDKERNSM-----LD---------VCH----DKILTELNMEDSSLCEANDVSF 93 (692)
T ss_dssp HHHHHHTTCCCCCCEEEEEEEEEEEEEETTTTEEE-----EC---------CSC----TTHHHHTTTTTHHHHHHTTEEE
T ss_pred HHHHHhcccCCCcccccceeEEEEEEecCCCceee-----ec---------ccH----HHHHHHHhhhhhhcccCCCCcc
Confidence 34556665 48899999999999998764211000 00 001 122222111 000011134699
Q ss_pred ecCcCCCeeeeecCCChhh----HHHHHHHHHHHHHHHHHHH
Q 026354 190 NGEVMPGQWEFQVGPAVGI----SAGDQLWVARYILEDYRDC 227 (240)
Q Consensus 190 h~E~gpGQ~Ei~l~~~~~l----~aAD~~~~~r~~ik~vA~~ 227 (240)
|.|+|.=..|.+-..-=.- .-=.++..-|..++..+..
T Consensus 94 ~PEyGryMlE~TP~~Py~g~~~~~VE~nMr~RR~~a~~~l~~ 135 (692)
T 3ig5_A 94 HPEYGRYMLEATPASPYLNYVGSYVEVNMQKRRAIAEYKLSE 135 (692)
T ss_dssp ECCSBTTEEEEEESSCEESCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhceeeccCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 9999988888843221111 2335566667777877776
No 21
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=32.40 E-value=95 Score=22.79 Aligned_cols=20 Identities=10% Similarity=0.003 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHhhcCCee
Q 026354 105 NKRHAAAKIFSHSDVVAEEP 124 (240)
Q Consensus 105 ~PR~~L~r~l~~l~~~Gl~~ 124 (240)
=||..++.+++.|.+.|+++
T Consensus 45 mPRRTiQd~I~aL~elgI~~ 64 (117)
T 3ke2_A 45 MPRRTLQDAIASFADIGIEV 64 (117)
T ss_dssp CCHHHHHHHHHTGGGGTCEE
T ss_pred CCHhHHHHHHHHhhhCCeEE
Confidence 48999999999998777654
No 22
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=22.64 E-value=87 Score=21.84 Aligned_cols=59 Identities=7% Similarity=-0.041 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCeEeeeecCc-CCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC
Q 026354 169 RDIVDSHYKACLYAGINISGINGEV-MPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC 230 (240)
Q Consensus 169 ~~i~~~l~~~l~~~GI~ve~~h~E~-gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl 230 (240)
..+...|.+.|+..++++..++.+. ++|+.||.-.- +..+.+--.+-.++-+++..-|.
T Consensus 21 ~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L---~at~~~~~~Le~iv~rLs~ep~V 80 (94)
T 2lqj_A 21 TYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHL---LMVGHTPAKLERLVAELSLQPGV 80 (94)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEE---EEESCCHHHHHHHHHHHHHSTTE
T ss_pred HHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEE---EecCCCHHHHHHHHHHHhCCCCe
Confidence 3444445556889999999999776 57777765432 22222222556677777777776
No 23
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=22.07 E-value=85 Score=24.80 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=29.7
Q ss_pred eeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-cee
Q 026354 197 QWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFF 233 (240)
Q Consensus 197 Q~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTF 233 (240)
.+||+|... |....+.-+++..+++.+.++|+ ++|
T Consensus 73 e~~iALP~E--L~~eq~~~L~~~f~~~~~~~~G~~~d~ 108 (185)
T 2ns6_A 73 EVEFALPVE--LTLDQQKALASEFAQHLTGAERLPYTL 108 (185)
T ss_dssp EEEEECCTT--SCHHHHHHHHHHHHHHHHTTTTCCEEE
T ss_pred EEEEECCcc--CCHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 478888654 78889999999999999999999 665
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=21.30 E-value=1.1e+02 Score=23.57 Aligned_cols=63 Identities=8% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCeEeeeecCc--------CCCeeeeecCCChhhHHHHHHHHHHHHHHHHHHHcCC-ceeec
Q 026354 171 IVDSHYKACLYAGINISGINGEV--------MPGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSC-AFFRS 235 (240)
Q Consensus 171 i~~~l~~~l~~~GI~ve~~h~E~--------gpGQ~Ei~l~~~~~l~aAD~~~~~r~~ik~vA~~~Gl-aTFmP 235 (240)
++.++.+.|.+.|++|+.++.-. +.+.|-+.+.-.-+ ..-+.-.+|..+..+|.+.|+ ..|.+
T Consensus 106 il~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~ 177 (192)
T 1u8s_A 106 LTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCTALDVQGSLNF 177 (192)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHhCceEEEEE
No 25
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=20.00 E-value=3.8e+02 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCeEeeeecCcC------CCeeeeec
Q 026354 169 RDIVDSHYKACLYAGINISGINGEVM------PGQWEFQV 202 (240)
Q Consensus 169 ~~i~~~l~~~l~~~GI~ve~~h~E~g------pGQ~Ei~l 202 (240)
..+.+.|.+.|++.||.++--..|.+ .|+|++.+
T Consensus 344 ~~~a~~i~~~l~~iGI~v~i~~~~~~~~~~~~~~~~d~~~ 383 (496)
T 3t66_A 344 PLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLIT 383 (496)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeccHHHHHhhCCCccEEE
Confidence 45666677779999999998877765 68888765
Done!