RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026354
(240 letters)
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase.
Length = 354
Score = 498 bits (1285), Expect = e-180
Identities = 209/222 (94%), Positives = 216/222 (97%)
Query: 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
MSLLSDL+NLNLS+STDKIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1 MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60
Query: 61 GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
GQAPGEDSEVILYPQAIFKDPFR GNNILVMCDAYTPAGEPIPTNKR AAKIFSH DV
Sbjct: 61 GQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVA 120
Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
AEEPWYGIEQEYTLLQKDVKWPLGWP+GGYPGPQGPYYCGVGADKA+GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAFGRDIVDAHYKACL 180
Query: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILE 222
YAGINISGINGEVMPGQWEFQVGP VGISAGDQLWVARYILE
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILE 222
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional.
Length = 432
Score = 418 bits (1076), Expect = e-147
Identities = 174/219 (79%), Positives = 197/219 (89%)
Query: 4 LSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQA 63
+ DLLNL+ + TD+IIAEYIWIGGSG+D+RSK+RT+ PV PS+LPKWNYDGSSTGQA
Sbjct: 64 VEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQA 123
Query: 64 PGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE 123
PGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKRH AA+IFS+ VV E
Sbjct: 124 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVVDEV 183
Query: 124 PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAG 183
PW+GIEQEYTLLQ++VKWPLGWP+G YPGPQGPYYCG GADK++GRDI D+HYKACLYAG
Sbjct: 184 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACLYAG 243
Query: 184 INISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILE 222
INISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILE
Sbjct: 244 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILE 282
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
Length = 259
Score = 138 bits (350), Expect = 4e-40
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 103 PTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVG 162
P + R + + + P++G EQE+ L DV+ G P GGYP P+GPYY G
Sbjct: 1 PRDPRSILKRALARLASLGYTPYFGPEQEFFLF-DDVRPGGGPPPGGYPDPRGPYYGGYF 59
Query: 163 ADKA--WGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYI 220
RDI KA AGI + GI+ EV PGQ E + A + A D L + +Y+
Sbjct: 60 PVAPLDEARDIRRDIVKALEAAGIPVEGIHHEVAPGQHEIDLRFADALEAADNLQLFKYV 119
Query: 221 L 221
+
Sbjct: 120 V 120
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 142 bits (360), Expect = 5e-40
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 13/211 (6%)
Query: 17 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNY--DGSSTGQAPG-EDSEVILY 73
+ + +G+ +R K PVS ++L + DGSS G +S+++L
Sbjct: 14 GVKFVDLRFTDLNGV-LRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAGFEGIGESDMVLK 72
Query: 74 P--QAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQ 130
P + DP+R G V+CD Y P G P P + R + D G E
Sbjct: 73 PDLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPEL 132
Query: 131 EYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGIN 190
E+ L +D G P +G Y+ D+A D +A AGI I I+
Sbjct: 133 EFFLFDRD-GRDPDG---GRPADKGGYFDVAPLDEA--EDFRRDIVEALEAAGIEIEAIH 186
Query: 191 GEVMPGQWEFQVGPAVGISAGDQLWVARYIL 221
EV PGQ+E + + A DQ+ + +Y++
Sbjct: 187 HEVAPGQFEINLRFDDALKAADQIVIFKYVV 217
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain.
Length = 84
Score = 74.5 bits (184), Expect = 1e-17
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 17 DKIIAEYIWIGGSGM--DMRSKARTLPGPVSDPSKLPKWNYDGSST-GQAPGEDSEVILY 73
+ + G +R A L D + +DGSS G AP +S++ L
Sbjct: 1 GVKFVDLRFTDILGRLKHVRIPATELDE---DAFEEG-IGFDGSSIEGFAPINESDMYLK 56
Query: 74 P--QAIFKDPFRR--GNNILVMCDAYTP 97
P + DPFR G V+CD Y P
Sbjct: 57 PDPSTAYIDPFRPDPGKTARVICDVYDP 84
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation [Amino acid biosynthesis, Glutamate
family].
Length = 459
Score = 48.5 bits (116), Expect = 1e-06
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 25/189 (13%)
Query: 55 YDGSS-TGQAPGEDSEVILYPQA--IFKDPFRRGNNILVMCDAYTPA-GEPIPTNKRHAA 110
+DGSS G E+S+++L P DP+R + V+CD Y P GEP + R A
Sbjct: 47 FDGSSIRGFQGIEESDMLLKPDPSTAVIDPWRAEKTLRVICDVYEPFTGEPYERDPRSIA 106
Query: 111 AKIFSH-SDVVAEEPWYGIEQEYTLLQKDVKWPLGW-----------------PIGGY-P 151
+ + + + ++G E E+ L L GY P
Sbjct: 107 KRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWNEESGNRGYKP 166
Query: 152 GPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 211
+G Y+ D A DI G ++ + EV GQ E +
Sbjct: 167 RDKGGYFPVAPTDTA--VDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTA 224
Query: 212 DQLWVARYI 220
D + +Y+
Sbjct: 225 DDIQTYKYV 233
>gnl|CDD|233049 TIGR00608, radc, DNA repair protein radc. The genes in this family
for which the functions are known have an as yet porrly
defined role in determining sensitivity to DNA damaging
agents such as UV irradiation. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 218
Score = 30.1 bits (68), Expect = 0.74
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 62 QAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTN 105
G + V ++P+ IFK+ + + L++ + P+GEP P+
Sbjct: 136 VFIGTVNHVPVHPREIFKEALKLSASALILAHNH-PSGEPSPSQ 178
>gnl|CDD|201802 pfam01451, LMWPc, Low molecular weight phosphotyrosine protein
phosphatase.
Length = 138
Score = 29.2 bits (66), Expect = 0.91
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 72 LYPQAIFKDPFRRGNNILVMCDAYTPAGEPI-PTNKRHAAAKIFSHSDVVAEEPWYGIEQ 130
+ + ++ + + IL M + PI P +R + H D+ +P+ G
Sbjct: 64 HRARQLTEELLKSFDLILTMDGEHIRDICPIAPGGRRAKVMLLGHHWDI--PDPYGGSID 121
Query: 131 EY 132
+
Sbjct: 122 AF 123
>gnl|CDD|165398 PHA03126, PHA03126, dUTPase; Provisional.
Length = 326
Score = 26.9 bits (59), Expect = 9.0
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 150 YPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQ 197
+PG YY G IVDS Y+ + A G+N V PGQ
Sbjct: 93 FPGNSAKYYTAYG--------IVDSGYRGVVKAVQFAPGVNTSVPPGQ 132
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.138 0.451
Gapped
Lambda K H
0.267 0.0833 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,514,788
Number of extensions: 1173118
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 734
Number of HSP's successfully gapped: 10
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)