RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 026354
         (240 letters)



>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
           domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 368

 Score = 34.8 bits (79), Expect = 0.007
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 124 PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAG 183
               I+          K+  G   G  PG +G Y+     D A  +DI           G
Sbjct: 47  SHVAIDDIEGAWNSSTKYEGGNK-GHRPGVKGGYFPVPPVDSA--QDIRSEMCLVMEQMG 103

Query: 184 INISGINGEVM-PGQWEFQVGPAVGISAGDQLWVARYILEDYRDCWSCAFF 233
           + +   + EV   GQ E            D++ + +Y++ +    +     
Sbjct: 104 LVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTAT 154


>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 100

 Score = 28.7 bits (64), Expect = 0.20
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 31  MDMRSKARTLPGPVSDPSKLPKWNYDG------SSTGQAPGEDSEVILYPQA--IFKDPF 82
            D + K + +  P        ++  +G      S  G     +S+++L P A     DPF
Sbjct: 22  TDTKGKEQHVTIPAHQV--NAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPF 79

Query: 83  RRGNNILVMCDAYTPA-GEP 101
              + +++ CD   P   + 
Sbjct: 80  FADSTLIIRCDILEPGTLQG 99


>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 100

 Score = 27.2 bits (60), Expect = 0.70
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 31  MDMRSKARTLPGPVS----DPSKLPKWNYDGSSTGQAPGEDSEVILYPQA--IFKDPFRR 84
            D+    +    P S                S  G     +S+++L P       DPFR 
Sbjct: 22  CDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFRA 81

Query: 85  GNNILVMCDAYTPA-GEP 101
              + +    + P   EP
Sbjct: 82  AKTLNINFFVHDPFTLEP 99


>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
           1496]}
          Length = 542

 Score = 25.3 bits (55), Expect = 8.6
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 2   SLLSDLLNLNLSEST--DKIIAEYIWIGGS 29
            L++++L L  +  T  +K +  ++WIGG 
Sbjct: 78  YLVTEVLELKNNNLTPVEKNL-HFVWIGGQ 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 973,715
Number of extensions: 46431
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 5
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)