Your job contains 1 sequence.
>026355
MTMLSLNSASWGSASCTKGLQFSPTKIPFGVFKILRARCSSSSSGGNNREPIANYAGVQL
EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC
TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT
LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFGNHF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026355
(240 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2204355 - symbol:AT1G76050 species:3702 "Arabi... 633 6.2e-62 1
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 243 1.8e-29 2
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 235 1.6e-28 2
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 232 1.2e-26 2
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 232 1.2e-26 2
TIGR_CMR|SPO_1408 - symbol:SPO_1408 "ribosomal large subu... 223 1.6e-26 2
UNIPROTKB|P33643 - symbol:rluD "23S rRNA pseudouridine sy... 230 1.9e-26 2
TIGR_CMR|CPS_3915 - symbol:CPS_3915 "ribosomal large subu... 228 2.5e-26 2
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 224 6.4e-26 2
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 212 1.7e-25 2
TIGR_CMR|CBU_0757 - symbol:CBU_0757 "ribosomal large subu... 187 4.5e-21 2
TIGR_CMR|APH_0362 - symbol:APH_0362 "ribosomal large subu... 170 1.9e-20 2
TIGR_CMR|ECH_0486 - symbol:ECH_0486 "ribosomal large subu... 163 1.6e-19 2
TIGR_CMR|CJE_1416 - symbol:CJE_1416 "ribosomal large subu... 152 5.9e-16 2
TIGR_CMR|NSE_0146 - symbol:NSE_0146 "ribosomal large subu... 150 1.0e-15 2
UNIPROTKB|Q4KFS5 - symbol:rluC "Pseudouridine synthase" s... 121 8.9e-09 2
UNIPROTKB|P0AA39 - symbol:rluC species:83333 "Escherichia... 113 1.7e-07 2
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 115 1.7e-07 2
DICTYBASE|DDB_G0280463 - symbol:DDB_G0280463 "Ribosomal l... 133 2.6e-07 2
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 111 3.7e-07 2
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 111 3.7e-07 2
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 106 1.0e-06 2
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 103 7.9e-06 2
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 94 1.3e-05 2
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 96 5.4e-05 2
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 90 8.8e-05 2
DICTYBASE|DDB_G0281097 - symbol:DDB_G0281097 "pseudouridi... 104 9.0e-05 2
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 102 0.00012 2
SGD|S000002194 - symbol:PUS9 "Mitochondrial tRNA:pseudour... 107 0.00034 2
SGD|S000005427 - symbol:RIB2 "Bifunctional DRAP deaminase... 97 0.00064 2
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 82 0.00076 2
TIGR_CMR|GSU_0671 - symbol:GSU_0671 "ribosomal large subu... 87 0.00093 2
>TAIR|locus:2204355 [details] [associations]
symbol:AT1G76050 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC007396 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 KO:K15452 EMBL:BX816325
EMBL:AK117781 IPI:IPI00528093 IPI:IPI00545612 RefSeq:NP_177732.2
RefSeq:NP_974151.1 UniGene:At.34707 UniGene:At.68569
UniGene:At.71876 ProteinModelPortal:Q3ECD0 SMR:Q3ECD0 STRING:Q3ECD0
PRIDE:Q3ECD0 EnsemblPlants:AT1G76050.2 GeneID:843937
KEGG:ath:AT1G76050 TAIR:At1g76050 InParanoid:Q3ECD0 OMA:GHCTDLS
PhylomeDB:Q3ECD0 ProtClustDB:CLSN2918520 Genevestigator:Q3ECD0
TIGRFAMs:TIGR00005 Uniprot:Q3ECD0
Length = 430
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 127/184 (69%), Positives = 142/184 (77%)
Query: 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110
P N AG+++EE VD GK+RLD+WISSRI+G+SRARVQSSIR GLV++NG+VV KVSH
Sbjct: 62 PRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSH 121
Query: 111 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170
NVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPGN TGTLVN
Sbjct: 122 NVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVN 181
Query: 171 GILHHCSLPTLASSNQXXXXXXXXXXXXX----XXXXXXXGASIRPGIVHRLDKGTSGLL 226
GILHHCSLP + SN AS+RPGIVHRLDKGT+GLL
Sbjct: 182 GILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLL 241
Query: 227 VVAK 230
VVAK
Sbjct: 242 VVAK 245
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 243 (90.6 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 49/119 (41%), Positives = 82/119 (68%)
Query: 59 QLEETVDTKAGKLRLDAWISSRID-GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+++ V+++ LRLD +++ + + +SR+ ++ I G V++NG + K S+ V+GG++
Sbjct: 4 EIKVVVNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNG-LHRKASYKVRGGEI 62
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ + + L + E+IPLDIVYED++++VVNK A MVVHPA GN GTLVN +L+HC
Sbjct: 63 IAVLLPPPRELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHC 121
Score = 99 (39.9 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAK 230
G +RPGIVHRLDK TSGLLVVAK
Sbjct: 128 GGVLRPGIVHRLDKDTSGLLVVAK 151
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 235 (87.8 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 49/115 (42%), Positives = 75/115 (65%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
+V T+ RLD +++ + GI+R+ Q I G V+++ ++ K S ++GG+ V T+
Sbjct: 11 SVPTEGEAERLDQFVARSVQGITRSAAQRLIEEGRVTVDDRL-EKPSLKLRGGERVVVTV 69
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
P EAE+IPL +++ED +V+VV+KPA MVVHPA GN GTLVN +L HC+
Sbjct: 70 PPPAPAVPEAEEIPLVVLHEDGDVVVVDKPAGMVVHPAAGNPGGTLVNALLAHCT 124
Score = 98 (39.6 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAK 230
G IRPGIVHR+DK TSG+LVVAK
Sbjct: 130 GGEIRPGIVHRIDKDTSGVLVVAK 153
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 232 (86.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 48/122 (39%), Positives = 80/122 (65%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L +TV D++ G+ RLD ++ SR+R++ + G +++NG V++K V GG+
Sbjct: 5 IELTQTVKDSQLGQ-RLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGE 63
Query: 117 MVNCTISELQP-LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
++ +EL+ R EA+D+PL+IVYEDD+++V+NKP VVHP G A T++N +L H
Sbjct: 64 VITVQ-AELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH 122
Query: 176 CS 177
S
Sbjct: 123 YS 124
Score = 83 (34.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 211 RPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK T+GL+VVAK +
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTV 152
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 232 (86.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 48/122 (39%), Positives = 80/122 (65%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L +TV D++ G+ RLD ++ SR+R++ + G +++NG V++K V GG+
Sbjct: 5 IELTQTVKDSQLGQ-RLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGE 63
Query: 117 MVNCTISELQP-LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
++ +EL+ R EA+D+PL+IVYEDD+++V+NKP VVHP G A T++N +L H
Sbjct: 64 VITVQ-AELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH 122
Query: 176 CS 177
S
Sbjct: 123 YS 124
Score = 83 (34.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 211 RPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK T+GL+VVAK +
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTV 152
>TIGR_CMR|SPO_1408 [details] [associations]
symbol:SPO_1408 "ribosomal large subunit pseudouridine
synthase D" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_166649.1
ProteinModelPortal:Q5LTK6 GeneID:3193242 KEGG:sil:SPO1408
PATRIC:23376131 OMA:CAHIGHP ProtClustDB:CLSK933544 Uniprot:Q5LTK6
Length = 342
Score = 223 (83.6 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 51/118 (43%), Positives = 69/118 (58%)
Query: 62 ETVDTKAGKLRLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
E V A RLD +S + +SR R+ I G VS++GQVV+ V G V
Sbjct: 7 EFVIAAAPPPRLDKALSRDVPETAALSRTRLARLITEGAVSVDGQVVTDPKARVVEGAQV 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++E + E IPL +VYEDD+++V++KPA MVVHPAPG +GTLVN +L HC
Sbjct: 67 AIALTEAEESHIAPEAIPLVVVYEDDDLIVIDKPAGMVVHPAPGTPSGTLVNALLAHC 124
Score = 92 (37.4 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 19/24 (79%), Positives = 20/24 (83%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHR+DK TSGLLVVAK
Sbjct: 132 GGVKRPGIVHRIDKDTSGLLVVAK 155
>UNIPROTKB|P33643 [details] [associations]
symbol:rluD "23S rRNA pseudouridine synthase" species:83333
"Escherichia coli K-12" [GO:0000455 "enzyme-directed rRNA
pseudouridine synthesis" evidence=IMP] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0000027 GO:GO:0009982 SUPFAM:SSF55120
EMBL:X57620 EMBL:U50134 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 PIR:E65037
RefSeq:NP_417085.1 RefSeq:YP_490818.1 PDB:1PRZ PDB:1QYU PDB:1V9F
PDB:2IST PDBsum:1PRZ PDBsum:1QYU PDBsum:1V9F PDBsum:2IST
ProteinModelPortal:P33643 SMR:P33643 DIP:DIP-10721N IntAct:P33643
PRIDE:P33643 EnsemblBacteria:EBESCT00000000818
EnsemblBacteria:EBESCT00000015233 GeneID:12934203 GeneID:947087
KEGG:ecj:Y75_p2543 KEGG:eco:b2594 PATRIC:32120591 EchoBASE:EB2022
EcoGene:EG12098 KO:K06180 OMA:KTIPAQT ProtClustDB:PRK11180
BioCyc:EcoCyc:EG12098-MONOMER BioCyc:ECOL316407:JW2576-MONOMER
BioCyc:MetaCyc:EG12098-MONOMER EvolutionaryTrace:P33643
Genevestigator:P33643 Uniprot:P33643
Length = 326
Score = 230 (86.0 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 48/119 (40%), Positives = 72/119 (60%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
VQL TV + + G+ RLD ++ SR+R++ I V +NG+V K V GG+
Sbjct: 5 VQLTATVSENQLGQ-RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
V + R E +DIPLDIVYED++++++NKP +VVHP GN GT++N +LH+
Sbjct: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122
Score = 83 (34.3 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 211 RPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK T+GL+VVAK +
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTV 152
>TIGR_CMR|CPS_3915 [details] [associations]
symbol:CPS_3915 "ribosomal large subunit pseudouridine
synthase D" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
ProtClustDB:PRK11180 RefSeq:YP_270573.1 ProteinModelPortal:Q47X97
SMR:Q47X97 STRING:Q47X97 GeneID:3521018 KEGG:cps:CPS_3915
PATRIC:21470721 BioCyc:CPSY167879:GI48-3928-MONOMER Uniprot:Q47X97
Length = 324
Score = 228 (85.3 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
+Q ++ V ++ GK R D ++ SR+R++ I +G V +NG V+ + GG+
Sbjct: 5 IQHQDIVPESCLGK-RFDQSLAIMFPDYSRSRIKDWILAGQVKVNGDVLLIPREKMYGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
++ +R EA++IPL+IVYEDD +LV+NKPA +VVHP GN GTL+N +LHH
Sbjct: 64 EIDINAKVEAEIRFEAQNIPLNIVYEDDYILVINKPAGLVVHPGAGNPDGTLLNALLHH 122
Score = 84 (34.6 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 211 RPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK T+GL+VVAK I
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTI 152
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 224 (83.9 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 48/118 (40%), Positives = 74/118 (62%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++L V ++ G RLD + SR+R+ + I+ G ++++G V+ + V GG +
Sbjct: 5 IELRAEVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVI-RPRDIVHGGSI 63
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
+ T + A+DI LDIVYEDD++LV+NKPA +VVHPA G+A GTL+N +LHH
Sbjct: 64 LELTAEQEAQGEWIAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHH 121
Score = 84 (34.6 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 211 RPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK T+GL+VVAK I
Sbjct: 130 RAGIVHRLDKDTTGLMVVAKTI 151
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 212 (79.7 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 40/102 (39%), Positives = 67/102 (65%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +I+ + +SR+ +Q + +G + +NG+ +K S +K GD + I P +
Sbjct: 14 RLDKYITQKETDLSRSFIQELVEAGHIQVNGKN-AKPSLKLKNGDTITIEIPPETPPELK 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
AEDIPL+I+++D ++L++NKP + VHPAPG+ TL+NG+L
Sbjct: 73 AEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVL 114
Score = 92 (37.4 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 210 IRPGIVHRLDKGTSGLLVVAK 230
+RPGIVHRLDK TSGLL+VAK
Sbjct: 127 LRPGIVHRLDKDTSGLLLVAK 147
>TIGR_CMR|CBU_0757 [details] [associations]
symbol:CBU_0757 "ribosomal large subunit pseudouridine
synthase D" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:YP_338280.2
GeneID:1208648 KEGG:cbu:CBU_0757 PATRIC:17930207
ProtClustDB:CLSK940427 BioCyc:CBUR227377:GJ7S-755-MONOMER
Uniprot:Q4AAY0
Length = 327
Score = 187 (70.9 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 38/119 (31%), Positives = 69/119 (57%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++L++ + + RLD ++ SR+++Q+ IR G V ++G +K V+
Sbjct: 10 IELKKIIPPELAGARLDQVLAKLFPDYSRSQLQNWIRGGHVKVDGIQKTKAREKVRENQF 69
Query: 118 VNCTISELQPL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
+ ++L+P R + IPLD++YED+ +LV+NKP ++VHP G TL+N +LH+
Sbjct: 70 IEIE-AQLEPNERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHY 127
Score = 81 (33.6 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 211 RPGIVHRLDKGTSGLLVVAKVIFS 234
R GI+HRLDK TSGLL++A+ + S
Sbjct: 136 RAGIIHRLDKDTSGLLLIARTLAS 159
Score = 40 (19.1 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 214 IVHRLDKGTSGLLVVAKVIFSPFGNH 239
IV + G+L+ + I +P G H
Sbjct: 172 IVREYEAIVKGVLISGRTIEAPVGRH 197
>TIGR_CMR|APH_0362 [details] [associations]
symbol:APH_0362 "ribosomal large subunit pseudouridine
synthase, RluA family" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:GVIRREY RefSeq:YP_504969.1 ProteinModelPortal:Q2GKY2
STRING:Q2GKY2 GeneID:3930557 KEGG:aph:APH_0362 PATRIC:20949328
ProtClustDB:CLSK2463740 BioCyc:APHA212042:GHPM-391-MONOMER
Uniprot:Q2GKY2
Length = 324
Score = 170 (64.9 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 41/118 (34%), Positives = 63/118 (53%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL-QPL 128
K RLD IS+ ++ ISR++ Q I G V++ V SH GD+ T+ + Q
Sbjct: 15 KKRLDVLISASLN-ISRSKAQCIISDGGVTLLDTPVLNNSHLTNTGDVYTVTVPDTPQST 73
Query: 129 RAEAE-DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
+ DIPL I+YED++++V++K ++ VHP G TL + +L HC A N
Sbjct: 74 SIDPNHDIPLHIIYEDEHIIVIDKAPNIAVHPGHGTKNDTLAHALLAHCGNALCAVGN 131
Score = 94 (38.1 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAK 230
G S RPGI+HRLDK TSGL+V+AK
Sbjct: 130 GNSHRPGIIHRLDKDTSGLMVIAK 153
>TIGR_CMR|ECH_0486 [details] [associations]
symbol:ECH_0486 "ribosomal large subunit pseudouridine
synthase, RluA family" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:HEYVRER RefSeq:YP_507302.1 ProteinModelPortal:Q2GGY1
STRING:Q2GGY1 GeneID:3927534 KEGG:ech:ECH_0486 PATRIC:20576444
ProtClustDB:CLSK749443 BioCyc:ECHA205920:GJNR-488-MONOMER
Uniprot:Q2GGY1
Length = 337
Score = 163 (62.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 39/126 (30%), Positives = 67/126 (53%)
Query: 54 NYAGVQLEETVDTKAG--KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHN 111
NY LE+ + K+G RLD +I+S+++ ISR +VQ I+ + + ++ +H
Sbjct: 10 NYNIKMLEKKIFIKSGDENNRLDKFIASKLN-ISRNQVQQLIKDSKILLFDTIIRDNNHI 68
Query: 112 VKGGDMVNCTI--SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 169
K D+ N +I + IP+ +VYED +++++NK + VHP G TLV
Sbjct: 69 TKVNDIYNISIPIKTISDTITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNNTLV 128
Query: 170 NGILHH 175
N ++ H
Sbjct: 129 NALVAH 134
Score = 94 (38.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAK 230
G + RPGI+HRLDK TSGL+V+AK
Sbjct: 143 GKATRPGIIHRLDKDTSGLMVIAK 166
>TIGR_CMR|CJE_1416 [details] [associations]
symbol:CJE_1416 "ribosomal large subunit pseudouridine
synthases, RluA family" species:195099 "Campylobacter jejuni
RM1221" [GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:VSGREDR RefSeq:YP_179402.1 ProteinModelPortal:Q5HTI3
STRING:Q5HTI3 GeneID:3231922 KEGG:cjr:CJE1416 PATRIC:20044634
ProtClustDB:CLSK872435 BioCyc:CJEJ195099:GJC0-1443-MONOMER
Uniprot:Q5HTI3
Length = 322
Score = 152 (58.6 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 33/104 (31%), Positives = 64/104 (61%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL-QPLRA 130
RLD +++ +++ SR +V I V +N ++ K S +K GD+++ +L ++
Sbjct: 11 RLDVFLAKKLNQ-SRNQVALLIEKDCVQVNDKIQDKNSFKLKNGDIISIASLKLCNEIKP 69
Query: 131 EAE-DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
+ E D +D++YED+++LV+NKP+++VVH A TLV+ ++
Sbjct: 70 QFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASSVKNATLVDWLI 113
Score = 82 (33.9 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKVIFS 234
G IR G+VHRLDK TSG +++AK F+
Sbjct: 123 GGEIRAGLVHRLDKDTSGSILIAKNNFT 150
>TIGR_CMR|NSE_0146 [details] [associations]
symbol:NSE_0146 "ribosomal large subunit pseudouridine
synthases, RluA family" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_506045.1
ProteinModelPortal:Q2GEQ1 STRING:Q2GEQ1 GeneID:3931949
KEGG:nse:NSE_0146 PATRIC:22680393 OMA:GVIRREY
ProtClustDB:CLSK2527656 BioCyc:NSEN222891:GHFU-181-MONOMER
Uniprot:Q2GEQ1
Length = 330
Score = 150 (57.9 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 40/116 (34%), Positives = 60/116 (51%)
Query: 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQP 127
AG RLD ++ + SR+ ++ I+ + G++ + S V G+ + L+
Sbjct: 11 AGN-RLDVFLHRCLPFFSRSFIKHCIKGSRIESEGKIQLEPSRRVVVGEEYHLFDLPLER 69
Query: 128 LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
A PLD+ YEDD +LV+ KPA +VVHP GN TLVN + HH L+S
Sbjct: 70 KPRHAFVQPLDVRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEKLSS 125
Score = 87 (35.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 209 SIRPGIVHRLDKGTSGLLVVAK 230
S RPGIVHRLDK T+G L+VAK
Sbjct: 128 SSRPGIVHRLDKDTAGFLIVAK 149
>UNIPROTKB|Q4KFS5 [details] [associations]
symbol:rluC "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0006364 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF RefSeq:YP_258908.1
ProteinModelPortal:Q4KFS5 SMR:Q4KFS5 STRING:Q4KFS5 GeneID:3477558
KEGG:pfl:PFL_1788 PATRIC:19872807 ProtClustDB:CLSK867667
BioCyc:PFLU220664:GIX8-1796-MONOMER Uniprot:Q4KFS5
Length = 318
Score = 121 (47.7 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 36/120 (30%), Positives = 63/120 (52%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSIN-GQVVSKVSHNVKGG 115
GVQL E AG+ R+D ++ +R+ G+ + + +R G V +N G++ K + ++ G
Sbjct: 10 GVQLLEVSPEYAGQ-RIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRI--KPEYKLQAG 66
Query: 116 DMVNCT---ISELQ---PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
D+V + E PL + + + IV+ED ++V+NKPA + VH G G +
Sbjct: 67 DVVRVPPVRVPERDEPVPLAQGLLQRLEASIVFEDKALIVINKPAGIAVHGGSGLNFGVI 126
Score = 66 (28.3 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 214 IVHRLDKGTSGLLVVAK 230
+VHRLD+ TSGLL++AK
Sbjct: 141 LVHRLDRDTSGLLMIAK 157
>UNIPROTKB|P0AA39 [details] [associations]
symbol:rluC species:83333 "Escherichia coli K-12"
[GO:0000455 "enzyme-directed rRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 EMBL:M62747
EMBL:M96791 PIR:C64852 RefSeq:NP_415604.1 RefSeq:YP_489354.1
PDB:1V9K PDB:1XPI PDBsum:1V9K PDBsum:1XPI ProteinModelPortal:P0AA39
SMR:P0AA39 DIP:DIP-47832N IntAct:P0AA39 PRIDE:P0AA39
EnsemblBacteria:EBESCT00000000214 EnsemblBacteria:EBESCT00000014626
GeneID:12932031 GeneID:945637 KEGG:ecj:Y75_p1056 KEGG:eco:b1086
PATRIC:32117413 EchoBASE:EB1108 EcoGene:EG11118
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF ProtClustDB:PRK11025
BioCyc:EcoCyc:EG11118-MONOMER BioCyc:ECOL316407:JW1072-MONOMER
BioCyc:MetaCyc:EG11118-MONOMER EvolutionaryTrace:P0AA39
Genevestigator:P0AA39 Uniprot:P0AA39
Length = 319
Score = 113 (44.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 33/118 (27%), Positives = 62/118 (52%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T D +AG+ R+D ++ +++ G+ ++ + +R G V +N + + K + ++ GD V
Sbjct: 14 TAD-EAGQ-RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPP 70
Query: 123 SELQPLRAEAEDIPLD--------IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
+ EA L I+YEDD++LV+NKP+ VH G + G ++ G+
Sbjct: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGL 127
Score = 64 (27.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 214 IVHRLDKGTSGLLVVAK 230
+VHRLD+ TSG+L+VAK
Sbjct: 139 LVHRLDRDTSGVLLVAK 155
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 115 (45.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT-IS 123
D AG+ RLD ++ +R+ G+ R+ +IR G V +N + V + + GD+V +
Sbjct: 10 DAHAGQ-RLDNFLITRLKGVPSTRIYRAIRKGEVRVNKRRVG-ADYRLVVGDLVRIPPVQ 67
Query: 124 ELQPLRAEAED----IPLD--IVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
P + D I L+ I+YE+ ++LV++KPA + VH G G +
Sbjct: 68 MAAPKKPATVDEKLLISLEMRILYEEADLLVIDKPAGLPVHGGSGIQGGVI 118
Score = 61 (26.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 214 IVHRLDKGTSGLLVVAK 230
+VHRLD+ TSG L+VAK
Sbjct: 133 LVHRLDRETSGCLMVAK 149
>DICTYBASE|DDB_G0280463 [details] [associations]
symbol:DDB_G0280463 "Ribosomal large subunit
pseudouridine synthase D" species:44689 "Dictyostelium discoideum"
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 SMART:SM00363
dictyBase:DDB_G0280463 GO:GO:0003723 EMBL:AAFI02000036
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 RefSeq:XP_641190.1 ProteinModelPortal:Q54VB9
EnsemblProtists:DDB0205216 GeneID:8622571 KEGG:ddi:DDB_G0280463
InParanoid:Q54VB9 OMA:VHMASEN Uniprot:Q54VB9
Length = 746
Score = 133 (51.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 35/97 (36%), Positives = 49/97 (50%)
Query: 134 DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQXXXXXXX 193
DI LDIVYED ++ ++NKPA M+VHP G+ I TL ++
Sbjct: 190 DIKLDIVYEDKDLAIINKPAGMLVHPT-ALTLGSNALVINKEDQTHTLVNA--------L 240
Query: 194 XXXXXXXXXXXXXGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G++++A+
Sbjct: 241 IHRYGGVENLSSVGGVERPGIVHRLDKDTAGMIIIAR 277
Score = 47 (21.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 84 ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAE 133
++R+ + + VSING + S VK D++ ++ + + + +
Sbjct: 37 LTRSAIPKILALKSVSINGLPLKDKSTKVKPNDIITIQLANIDSFKVDQQ 86
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 111 (44.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 33/121 (27%), Positives = 63/121 (52%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQ + + AG+ R+D ++ +++ I ++ V +R G V +N + V K + ++ GD+
Sbjct: 8 VQFIDIDEDMAGQ-RIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDV 65
Query: 118 VNCT-----ISELQPLR-----AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 167
V + E +P ++ ++ IVYEDD++L++NKP+ VH G G
Sbjct: 66 VRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGA 125
Query: 168 L 168
+
Sbjct: 126 I 126
Score = 63 (27.2 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 214 IVHRLDKGTSGLLVVAK 230
+VHR+D+ TSG+L+VAK
Sbjct: 141 LVHRIDRDTSGILLVAK 157
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 111 (44.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 33/121 (27%), Positives = 63/121 (52%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQ + + AG+ R+D ++ +++ I ++ V +R G V +N + V K + ++ GD+
Sbjct: 8 VQFIDIDEDMAGQ-RIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDV 65
Query: 118 VNCT-----ISELQPLR-----AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 167
V + E +P ++ ++ IVYEDD++L++NKP+ VH G G
Sbjct: 66 VRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGA 125
Query: 168 L 168
+
Sbjct: 126 I 126
Score = 63 (27.2 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 214 IVHRLDKGTSGLLVVAK 230
+VHR+D+ TSG+L+VAK
Sbjct: 141 LVHRIDRDTSGILLVAK 157
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 106 (42.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC-TISELQPLR 129
+RLD ++ S + G+ +A V+ +R G + +N + S V+ GD V+ + ++
Sbjct: 1 MRLDRYVRSILPGVPQALVEKLLRKGEIRLNSSK-ALASSRVQRGDTVSIRNVDKIASRS 59
Query: 130 AEAEDIPLD---------IVYEDDNVLVVNKPA 153
EA+++ D I+Y+D+N++ +NKPA
Sbjct: 60 KEAKEVHDDALLRLVSDNIIYKDENIIAINKPA 92
Score = 64 (27.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 214 IVHRLDKGTSGLLVVAK 230
IVHRLD+ TSG+L++A+
Sbjct: 121 IVHRLDRDTSGVLIIAR 137
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 103 (41.3 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
+AG +RLD + +S+ R+++ I G ++ G +V S ++ GD + + E +
Sbjct: 11 QAG-VRLDEGAARLFPQLSKTRIRTIIDWGGCAVGGTMVRVASRRLQAGDEIVLGVMEPE 69
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
R E P DI++ED L VNK + + P GT+ + H
Sbjct: 70 RYR-EITLAPEDILFEDGGYLAVNKASGLNCQRTPYQLKGTVEYAVTLH 117
Score = 59 (25.8 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 209 SIRPG-IVHRLDKGTSGLLV 227
S P ++HRLD+GTSG+++
Sbjct: 123 SAEPARVIHRLDRGTSGVMI 142
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 94 (38.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 56 AGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
+GVQ+ TV G RLD W + + R++ R G + ++G +K + ++ G
Sbjct: 2 SGVQMI-TVGEGDGDQRLDRWFRRMFPHVGQGRIEKMCRKGELRVDG-ARAKPATRLEVG 59
Query: 116 DMVNCTI-----SELQPLRAEAED-----IPLDIVYEDDNVLVVNKPAHMVVHPAPG 162
V +P+++ D I +++ DD+++V+NKPA + V G
Sbjct: 60 QQVRIPPLPAPGERPEPVKSRVSDSDAKLIRACVLHRDDDIIVLNKPAGLAVQGGSG 116
Score = 70 (29.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAK 230
G P +VHRLDK TSG+LV+A+
Sbjct: 131 GNDENPRLVHRLDKDTSGVLVLAR 154
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 96 (38.9 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 26/113 (23%), Positives = 57/113 (50%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT- 121
T+D++ R+D ++ + G+ ++ + +R G + +N + + V + + D V
Sbjct: 56 TIDSEDAGQRIDNFLLRTLKGVPKSHLYRLMRKGEIRVNKKRIKPV-YKLLIDDEVRIAP 114
Query: 122 --ISELQPLRAEA----EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
+SE + + ++ I++EDD ++V+NKP+ M VH G + G +
Sbjct: 115 IRVSEEKDAVSTGLHIVANLEKQILFEDDRLIVINKPSGMAVHGGSGLSFGLI 167
Score = 62 (26.9 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 214 IVHRLDKGTSGLLVVAK 230
+VHRLD+ TSG L+VAK
Sbjct: 182 LVHRLDRDTSGCLMVAK 198
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 90 (36.7 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSI-NGQVVSKVSHNVKGGDMVNCT-----ISE 124
+R+D +I RI I ++ V+ +R G+V + N +V S V +K G+++ C I E
Sbjct: 15 IRIDKFIR-RILKIPQSLVEKFLRKGVVLLDNTKVKSDV--RIKAGNVI-CVRYDRVIYE 70
Query: 125 LQPLR--AEAED------IPLDIVYEDDNVLVVNKPAHMVV 157
+ +R +A+ I +VYEDD+VL++NKPA + V
Sbjct: 71 RKQIRKICKADSDFLVHLIRNSVVYEDDDVLIINKPAGISV 111
Score = 65 (27.9 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAK 230
G S++ IVHRLDK TSG+L++A+
Sbjct: 131 GESMK--IVHRLDKDTSGILMLAR 152
>DICTYBASE|DDB_G0281097 [details] [associations]
symbol:DDB_G0281097 "pseudouridine synthase family
protein" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
dictyBase:DDB_G0281097 EMBL:AAFI02000040 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 KO:K15454 RefSeq:XP_640817.1
ProteinModelPortal:Q54UF9 STRING:Q54UF9 EnsemblProtists:DDB0238343
GeneID:8622871 KEGG:ddi:DDB_G0281097 OMA:FAKERWF Uniprot:Q54UF9
Length = 578
Score = 104 (41.7 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 32/91 (35%), Positives = 48/91 (52%)
Query: 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
G+ LD + S SR I+ GL+ +N Q+VS S+ +K D + T+ +P
Sbjct: 177 GQSILDMF-SQEFSTNSRDVYLKKIKRGLIKVNDQLVSP-SYKIKLNDTIIHTVHRHEP- 233
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 159
E I IV D+NV+VV+KP+ + VHP
Sbjct: 234 PVTGESIK--IVSLDENVVVVDKPSSIPVHP 262
Score = 56 (24.8 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 215 VHRLDKGTSGLLVVAK 230
VHRLD+ TSGLL++A+
Sbjct: 287 VHRLDRLTSGLLLLAR 302
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 102 (41.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/77 (27%), Positives = 43/77 (55%)
Query: 83 GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 142
G+S+ +++ V N + V SH G++V + P ++++ P+ ++YE
Sbjct: 24 GLSKRQLRKLKLQNAVFFNNRPVPLNSHLTTPGEVV-IKLPHTLPPAVQSQNAPVKVLYE 82
Query: 143 DDNVLVVNKPAHMVVHP 159
DD ++V++KPA ++ HP
Sbjct: 83 DDYLIVIDKPAGVLAHP 99
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 215 VHRLDKGTSGLLVVAK 230
++RLD+ TSG +++AK
Sbjct: 129 IYRLDRNTSGPMLIAK 144
>SGD|S000002194 [details] [associations]
symbol:PUS9 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISM;IMP] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IMP;IDA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
SGD:S000002194 GO:GO:0005739 GO:GO:0005634 EMBL:BK006938
GO:GO:0003723 EMBL:Z71781 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 EMBL:Z74084 EMBL:AY692682 PIR:S67569
RefSeq:NP_010248.1 ProteinModelPortal:Q12069 SMR:Q12069
DIP:DIP-5399N MINT:MINT-553402 STRING:Q12069 PaxDb:Q12069
EnsemblFungi:YDL036C GeneID:851525 KEGG:sce:YDL036C CYGD:YDL036c
GeneTree:ENSGT00420000029802 KO:K15454 OMA:GHPISND
OrthoDB:EOG4BK8C8 NextBio:968911 Genevestigator:Q12069
GermOnline:YDL036C Uniprot:Q12069
Length = 462
Score = 107 (42.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K +D +IS D S + +I +G V IN + +S ++ GD++ + +P
Sbjct: 126 KKLVDVFISEFRDRESEY-YKRTIENGDVHINDETAD-LSTVIRNGDLITHQVHRHEP-- 181
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 159
P+ +++EDDN++V++KP+ + VHP
Sbjct: 182 -PVTSRPIKVIFEDDNIMVIDKPSGIPVHP 210
Score = 44 (20.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 216 HRLDKGTSGLLVVAK 230
+RLD+ TSGL+ +AK
Sbjct: 235 NRLDRLTSGLMFLAK 249
>SGD|S000005427 [details] [associations]
symbol:RIB2 "Bifunctional DRAP deaminase and
tRNA:pseudouridine synthase" species:4932 "Saccharomyces
cerevisiae" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA;IMP] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA;IMP] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISM;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR002125 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR016193
InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 UniPathway:UPA00275 SGD:S000005427
GO:GO:0005737 EMBL:BK006948 GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0009231 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 GeneTree:ENSGT00420000029802 OrthoDB:EOG4BK8C8
eggNOG:COG0117 KO:K14655 GO:GO:0008835 EMBL:Z21618 EMBL:Z74808
PIR:S50972 RefSeq:NP_014575.1 ProteinModelPortal:Q12362 SMR:Q12362
DIP:DIP-3840N MINT:MINT-495231 STRING:Q12362 PaxDb:Q12362
PeptideAtlas:Q12362 PRIDE:Q12362 EnsemblFungi:YOL066C GeneID:854088
KEGG:sce:YOL066C CYGD:YOL066c OMA:EQCALEK
BioCyc:MetaCyc:YOL066C-MONOMER NextBio:975737 Genevestigator:Q12362
GermOnline:YOL066C GO:GO:0043723 Uniprot:Q12362
Length = 591
Score = 97 (39.2 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 92 SIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 151
+I G V +N + + + ++ GD++ + +P P+DIV+ED+++LV++K
Sbjct: 120 TIAEGKVYLNDEPAN-LDTIIRDGDLITHKVHRHEP---PVTSKPIDIVFEDEDILVIDK 175
Query: 152 PAHMVVHP 159
P+ + VHP
Sbjct: 176 PSSIPVHP 183
Score = 56 (24.8 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAKVIFSPFG 237
G S+ P +RLDK TSGL+ +AK +P G
Sbjct: 201 GYSVHP--CNRLDKPTSGLMFLAK---TPLG 226
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 82 (33.9 bits), Expect = 0.00077, Sum P(2) = 0.00076
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ ++ +Q ++R V +N VV K S V GD + + + LQ L +
Sbjct: 12 RLDKYLRDTFGQFPQSALQKALRKKAVRLNNSVV-KASAAVLKGDSLTLSANFLQILSSP 70
Query: 132 AEDIPLD----------------IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
E IP D ++YED+NVL ++KP V G T ++ N +
Sbjct: 71 RE-IPSDSSKVVDSKFVEFIASLMLYEDENVLAISKPFGFPVQSGYG-ITASIDNAM 125
Score = 65 (27.9 bits), Expect = 0.00077, Sum P(2) = 0.00076
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 209 SIRPG--IVHRLDKGTSGLLVVAKVI 232
SI P +VHRLDK T+G+L+ AK +
Sbjct: 127 SINPEYRVVHRLDKHTTGVLIFAKTL 152
>TIGR_CMR|GSU_0671 [details] [associations]
symbol:GSU_0671 "ribosomal large subunit pseudouridine
synthase C" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 KO:K06179
RefSeq:NP_951728.1 ProteinModelPortal:Q74FD8 GeneID:2685543
KEGG:gsu:GSU0671 PATRIC:22024099 OMA:MKIEIGA ProtClustDB:CLSK827983
BioCyc:GSUL243231:GH27-690-MONOMER Uniprot:Q74FD8
Length = 296
Score = 87 (35.7 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 74 DAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAE 133
++++ + + A ++ I +G + ING V+ + G + L A A+
Sbjct: 16 ESFLRNLLPAAPSAYIRKLISAGHLKINGGAVAPDTLLAAGNTATIKESDRTRQLLAAAK 75
Query: 134 DIPLDIVYEDDNVLVVNKPAHMVVH 158
LDI++EDD ++VNKPA + VH
Sbjct: 76 P-QLDILWEDDYCVIVNKPAGLPVH 99
Score = 58 (25.5 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 207 GASIRPGIVHRLDKGTSGLLVVAK 230
G +++ V+RLD+GTSG ++AK
Sbjct: 121 GTAVKLRPVNRLDRGTSGATILAK 144
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 240 211 0.00081 112 3 11 22 0.37 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 604 (64 KB)
Total size of DFA: 159 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.86u 0.13s 15.99t Elapsed: 00:00:01
Total cpu time: 15.87u 0.13s 16.00t Elapsed: 00:00:01
Start: Fri May 10 09:18:55 2013 End: Fri May 10 09:18:56 2013