BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026355
(240 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224065743|ref|XP_002301949.1| predicted protein [Populus trichocarpa]
gi|222843675|gb|EEE81222.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/232 (67%), Positives = 183/232 (78%), Gaps = 12/232 (5%)
Query: 3 MLSLNSASWGSASCTKGLQFSPTKIPFGVFKILRARCSSSSSGGNNREP--IANYAGVQL 60
MLS++S S SA + L PT ++L SS+ +N+ P NY+GV+L
Sbjct: 30 MLSISSVSRCSAP-SFFLSQKPT-----ASRLLTVHSSSTREPNSNQNPGQRINYSGVKL 83
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
EE+VD+K+GK RLD+WISSRI GISRARVQSSI+SGLVS+NG+V+ KVSHNVK GD VNC
Sbjct: 84 EESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNC 143
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
ISELQPLRAE E+IPLDIVYED+NVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT
Sbjct: 144 VISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 203
Query: 181 LASSNQEAFSDAEDISDDEE--FSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++S QE S AED+SDD++ SS AS+RPGIVHRLDKGTSGLLVVAK
Sbjct: 204 VSS--QEVLSGAEDVSDDDDEGLCSSSYAASVRPGIVHRLDKGTSGLLVVAK 253
>gi|449450654|ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
sativus]
Length = 453
Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 154/239 (64%), Positives = 176/239 (73%), Gaps = 23/239 (9%)
Query: 13 SASCTKGLQFSPTKIPF-----------GVFKI---LRARCSSS--SSGGNNREPIANYA 56
S + +Q SP+ I F V +I RCSS E IANYA
Sbjct: 3 SVCSARTIQASPSPIHFFFPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIANYA 62
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
G +LEETVD GK+RLD+WIS RI+GISRARVQSSIR+GLVS+NG+V+ KVSHNVK GD
Sbjct: 63 GTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGD 122
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++NCTISELQPLRAE EDI LDIVYED++VLVVNKPAHMVVHPAPGNATGTLVN IL+HC
Sbjct: 123 VINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHC 182
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFS-----SSISGASIRPGIVHRLDKGTSGLLVVAK 230
SLP +A+S E SD+ D+SDD EFS S +S A IRPGIVHRLDKGTSGLLVVAK
Sbjct: 183 SLPMVATSTGENESDS-DVSDD-EFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAK 239
>gi|449500428|ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
chloroplastic-like [Cucumis sativus]
Length = 452
Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 154/239 (64%), Positives = 176/239 (73%), Gaps = 23/239 (9%)
Query: 13 SASCTKGLQFSPTKIPF-----------GVFKI---LRARCSSS--SSGGNNREPIANYA 56
S + +Q SP+ I F V +I RCSS E IANYA
Sbjct: 3 SVCSARTIQASPSPIHFFFPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIANYA 62
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
G +LEETVD GK+RLD+WIS RI+GISRARVQSSIR+GLVS+NG+V+ KVSHNVK GD
Sbjct: 63 GTRLEETVDVNPGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGD 122
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++NCTISELQPLRAE EDI LDIVYED++VLVVNKPAHMVVHPAPGNATGTLVN IL+HC
Sbjct: 123 VINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHC 182
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFS-----SSISGASIRPGIVHRLDKGTSGLLVVAK 230
SLP +A+S E SD+ D+SDD EFS S +S A IRPGIVHRLDKGTSGLLVVAK
Sbjct: 183 SLPMVATSTGENESDS-DVSDD-EFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAK 239
>gi|255556673|ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223541437|gb|EEF42987.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 399
Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 156/181 (86%), Gaps = 4/181 (2%)
Query: 54 NYAGVQLEETVDT---KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110
NY G++LEETV K+ KLRLD+WISSRI GISRARVQSSI+SGLVS+NG+VV KVSH
Sbjct: 52 NYGGIRLEETVQVVHAKSVKLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDKVSH 111
Query: 111 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170
NVK GD V CTISELQPLRAE ED+PLDIVYED+++LVVNKP HMVVHPAPGN TGTLVN
Sbjct: 112 NVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGTLVN 171
Query: 171 GILHHCSLPTLASSNQEAFSDAEDISDDEE-FSSSISGASIRPGIVHRLDKGTSGLLVVA 229
GILHHC+LPT+A S+QE SDAED SDD+E SS +SIRPGIVHRLDKGTSGLLVVA
Sbjct: 172 GILHHCNLPTVAISSQEVLSDAEDRSDDDERSYSSSCESSIRPGIVHRLDKGTSGLLVVA 231
Query: 230 K 230
K
Sbjct: 232 K 232
>gi|297839485|ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata]
gi|297333465|gb|EFH63883.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata]
Length = 930
Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 139/183 (75%), Positives = 156/183 (85%), Gaps = 3/183 (1%)
Query: 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110
P N AG+++EETVD GK+RLD+WISSR++G+SRARVQSSIR GLV++NG+VV KVSH
Sbjct: 564 PRVNNAGLRIEETVDALKGKIRLDSWISSRVNGVSRARVQSSIRLGLVTVNGRVVDKVSH 623
Query: 111 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170
NVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPGN TGTLVN
Sbjct: 624 NVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVN 683
Query: 171 GILHHCSLPTLASSNQE-AFSDAEDISDDEEF--SSSISGASIRPGIVHRLDKGTSGLLV 227
GILHHCSLP ++ SN E SD E SDDEE SSS AS+RPGIVHRLDKGT+GLLV
Sbjct: 684 GILHHCSLPCVSYSNAEDDDSDEETFSDDEEMTTSSSSYAASVRPGIVHRLDKGTTGLLV 743
Query: 228 VAK 230
VAK
Sbjct: 744 VAK 746
>gi|42563248|ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thaliana]
gi|332197668|gb|AEE35789.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
Length = 313
Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 137/184 (74%), Positives = 156/184 (84%), Gaps = 4/184 (2%)
Query: 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110
P N AG+++EE VD GK+RLD+WISSRI+G+SRARVQSSIR GLV++NG+VV KVSH
Sbjct: 62 PRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSH 121
Query: 111 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170
NVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPGN TGTLVN
Sbjct: 122 NVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVN 181
Query: 171 GILHHCSLPTLASSN--QEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLL 226
GILHHCSLP + SN ++ SD E SDDEE ++S S AS+RPGIVHRLDKGT+GLL
Sbjct: 182 GILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLL 241
Query: 227 VVAK 230
VVAK
Sbjct: 242 VVAK 245
>gi|42572121|ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 2; AltName:
Full=RNA-uridine isomerase 2; Flags: Precursor
gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
Length = 430
Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/184 (74%), Positives = 156/184 (84%), Gaps = 4/184 (2%)
Query: 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110
P N AG+++EE VD GK+RLD+WISSRI+G+SRARVQSSIR GLV++NG+VV KVSH
Sbjct: 62 PRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSH 121
Query: 111 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170
NVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPGN TGTLVN
Sbjct: 122 NVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVN 181
Query: 171 GILHHCSLPTLASSN--QEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLL 226
GILHHCSLP + SN ++ SD E SDDEE ++S S AS+RPGIVHRLDKGT+GLL
Sbjct: 182 GILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLL 241
Query: 227 VVAK 230
VVAK
Sbjct: 242 VVAK 245
>gi|359492029|ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
vinifera]
gi|302141717|emb|CBI18920.3| unnamed protein product [Vitis vinifera]
Length = 433
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/245 (62%), Positives = 180/245 (73%), Gaps = 23/245 (9%)
Query: 3 MLSLNSASWGSASCTKGLQFSPTKIPFG---VFKILRARCSSSSSGGNNREPI------- 52
+ SLNSAS+ S S T + P VF+ILRA CS+S+ EP+
Sbjct: 2 IFSLNSASFFSISHTSQSALLFPRNPKSCSRVFRILRA-CSNSTD-----EPLVSVSGRR 55
Query: 53 ANYAGVQLEETV---DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVS 109
NYAGV+LEETV ++ +GKLRLD+WISSRI GISRARVQSSIRSGLVS+N ++V KVS
Sbjct: 56 TNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVS 115
Query: 110 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 169
H ++ GD VNCTISELQPLRAE EDIPLDIVYED++VLVVNKPAHMVVHPAPGNA+GTLV
Sbjct: 116 HVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLV 175
Query: 170 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSS----SISGASIRPGIVHRLDKGTSGL 225
NGILHHCSLPT+A N+++ D + F++ +IRPGIVHRLDKGTSGL
Sbjct: 176 NGILHHCSLPTVALPNRDSEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGL 235
Query: 226 LVVAK 230
LVVAK
Sbjct: 236 LVVAK 240
>gi|357467069|ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatula]
gi|355492867|gb|AES74070.1| RNA pseudourine synthase [Medicago truncatula]
Length = 465
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/266 (57%), Positives = 180/266 (67%), Gaps = 39/266 (14%)
Query: 3 MLSLNSAS--WGSASCTKGLQF------SPTKI-PFGVFKILRARCSSSSSGGNN----- 48
MLSLN++ G ++ TK QF SP P FK+ + S S+ N+
Sbjct: 1 MLSLNTSCGFCGVSTSTKAFQFHFRTSSSPFFFSPLNNFKLRSSIAKSFSTFSNDSNSST 60
Query: 49 REPIANYAGVQLEETVD---TKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVV 105
EP +NYAGV LEE V K+GKLRLD+WISSRI+GISRARVQSSI++GLV +NG+VV
Sbjct: 61 EEPKSNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVV 120
Query: 106 SK---------VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMV 156
K VS NV+ GD + CTI+ELQ LRA E+IPLDIVYEDD++LV+NKPAHMV
Sbjct: 121 DKLSIVVILEQVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMV 180
Query: 157 VHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDE------------EFSSS 204
VHPAPGN +GTLVNGILHHC+LP + S +EA SD ED SDDE S
Sbjct: 181 VHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTED-SDDELNGFSSQSSSSVGLDSR 239
Query: 205 ISGASIRPGIVHRLDKGTSGLLVVAK 230
+S ASIRPGIVHRLDKGTSGLLVVAK
Sbjct: 240 LSMASIRPGIVHRLDKGTSGLLVVAK 265
>gi|356509084|ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Glycine
max]
Length = 450
Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 133/198 (67%), Positives = 155/198 (78%), Gaps = 19/198 (9%)
Query: 50 EPIANYAGVQLEETVDTK--AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSK 107
EP N++GV+LEE VD++ +GKLRLD WISSRI+GISRARVQSSI+SGLV +NG+VV K
Sbjct: 59 EPKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDK 118
Query: 108 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 167
VS NVK GD + CTI+ELQ LRA ++IPLDIVYED++VLV+NKPAHMVVHPAPGN +GT
Sbjct: 119 VSFNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGT 178
Query: 168 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGA---------------SIRP 212
LVNGILHHC+LP + S EA SD ED D+EF+S IS A SIRP
Sbjct: 179 LVNGILHHCNLPNVEFSKDEALSDTED--SDDEFNSYISLASSCEGLNSRLSVASNSIRP 236
Query: 213 GIVHRLDKGTSGLLVVAK 230
GIVHRLDKGTSGLLVVAK
Sbjct: 237 GIVHRLDKGTSGLLVVAK 254
>gi|6721111|gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]
Length = 980
Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/210 (65%), Positives = 156/210 (74%), Gaps = 30/210 (14%)
Query: 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV-- 108
P N AG+++EE VD GK+RLD+WISSRI+G+SRARVQSSIR GLV++NG+VV KV
Sbjct: 586 PRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVLT 645
Query: 109 ------------------------SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDD 144
SHNVK GD VNCTISELQPL+AEAEDIPLDIVYED
Sbjct: 646 SKFDSSKKFQFCNQVSISLTLFQVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDK 705
Query: 145 NVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN--QEAFSDAEDISDDEEFS 202
+VLVVNKPAHMVVHPAPGN TGTLVNGILHHCSLP + SN ++ SD E SDDEE +
Sbjct: 706 HVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMT 765
Query: 203 SSIS--GASIRPGIVHRLDKGTSGLLVVAK 230
+S S AS+RPGIVHRLDKGT+GLLVVAK
Sbjct: 766 TSPSSYAASVRPGIVHRLDKGTTGLLVVAK 795
>gi|224083169|ref|XP_002306957.1| predicted protein [Populus trichocarpa]
gi|222856406|gb|EEE93953.1| predicted protein [Populus trichocarpa]
Length = 192
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/182 (72%), Positives = 149/182 (81%), Gaps = 7/182 (3%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV-SHNVKGGD 116
V+LEETVD+K+GKLRLD+WIS RI GISRARVQS I+SG+VS+NG++ KV SHNVK GD
Sbjct: 11 VKLEETVDSKSGKLRLDSWISCRISGISRARVQSIIKSGIVSVNGKITYKVFSHNVKAGD 70
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++C I E +PLR E E++PLDIVYED+NVLVVNKPA MVVHPAPGNATGTLVNGILHH
Sbjct: 71 EMDCIILEWKPLRVEPENLPLDIVYEDENVLVVNKPAQMVVHPAPGNATGTLVNGILHHS 130
Query: 177 SLPTLASSNQEAFSDAEDISDD---EEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIF 233
S PT+ SNQE SDAEDISDD E SS AS+RPGIVH LDKGTSGLLVVAKV
Sbjct: 131 S-PTV--SNQEVLSDAEDISDDGDGEGLCSSSYVASVRPGIVHWLDKGTSGLLVVAKVTP 187
Query: 234 SP 235
P
Sbjct: 188 PP 189
>gi|242097088|ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
gi|241917257|gb|EER90401.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
Length = 441
Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 122/191 (63%), Positives = 147/191 (76%), Gaps = 15/191 (7%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+ G++LEE V G+ R+DAWIS+R+ G +SRARVQ+SIR+GLV++NG+ VSKVSH V
Sbjct: 57 HGGMRLEEAVPVGEGRSRIDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTV 116
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 117 KGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAI 176
Query: 173 LHHCSLPTL-----ASSNQEAFSDAEDISD--------DEEFSSSISGASIRPGIVHRLD 219
LHHC + T +S+ E ++D D E+ SS + A +RPGIVHRLD
Sbjct: 177 LHHCKISTFTCLARSSTGDECLDSSDDDIDVFNVDQFATEDASSEVRNALVRPGIVHRLD 236
Query: 220 KGTSGLLVVAK 230
KGTSGLLVVAK
Sbjct: 237 KGTSGLLVVAK 247
>gi|413943106|gb|AFW75755.1| hypothetical protein ZEAMMB73_425131 [Zea mays]
Length = 350
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/191 (64%), Positives = 145/191 (75%), Gaps = 15/191 (7%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+ G +LEE V G+ R+DAWIS+R+ G +SRARVQ+SIR+GLV++NG+ VSKVSH V
Sbjct: 54 HGGTRLEEAVPVGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTV 113
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 114 KGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAI 173
Query: 173 LHHCSLPTLA----SSNQEAFSDAEDISDD---------EEFSSSISGASIRPGIVHRLD 219
LHHC + T SS + D+ D D E+ SS + A +RPGIVHRLD
Sbjct: 174 LHHCKISTFTCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLD 233
Query: 220 KGTSGLLVVAK 230
KGTSGLLVVAK
Sbjct: 234 KGTSGLLVVAK 244
>gi|226491450|ref|NP_001140404.1| RNA binding protein [Zea mays]
gi|194699356|gb|ACF83762.1| unknown [Zea mays]
gi|413943105|gb|AFW75754.1| RNA binding protein [Zea mays]
Length = 419
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/191 (64%), Positives = 145/191 (75%), Gaps = 15/191 (7%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+ G +LEE V G+ R+DAWIS+R+ G +SRARVQ+SIR+GLV++NG+ VSKVSH V
Sbjct: 54 HGGTRLEEAVPVGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTV 113
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 114 KGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAI 173
Query: 173 LHHCSLPTLA----SSNQEAFSDAEDISDD---------EEFSSSISGASIRPGIVHRLD 219
LHHC + T SS + D+ D D E+ SS + A +RPGIVHRLD
Sbjct: 174 LHHCKISTFTCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLD 233
Query: 220 KGTSGLLVVAK 230
KGTSGLLVVAK
Sbjct: 234 KGTSGLLVVAK 244
>gi|413943104|gb|AFW75753.1| hypothetical protein ZEAMMB73_425131 [Zea mays]
Length = 312
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/191 (64%), Positives = 145/191 (75%), Gaps = 15/191 (7%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+ G +LEE V G+ R+DAWIS+R+ G +SRARVQ+SIR+GLV++NG+ VSKVSH V
Sbjct: 54 HGGTRLEEAVPVGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTV 113
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 114 KGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAI 173
Query: 173 LHHCSLPTLA----SSNQEAFSDAEDISDD---------EEFSSSISGASIRPGIVHRLD 219
LHHC + T SS + D+ D D E+ SS + A +RPGIVHRLD
Sbjct: 174 LHHCKISTFTCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLD 233
Query: 220 KGTSGLLVVAK 230
KGTSGLLVVAK
Sbjct: 234 KGTSGLLVVAK 244
>gi|195644818|gb|ACG41877.1| RNA binding protein [Zea mays]
Length = 439
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/191 (64%), Positives = 145/191 (75%), Gaps = 15/191 (7%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+ G +LEE V G+ R+DAWIS+R+ G +SRARVQ+SIR+GLV++NG+ VSKVSH V
Sbjct: 54 HGGTRLEEAVPVGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTV 113
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 114 KGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAI 173
Query: 173 LHHCSLPTLA----SSNQEAFSDAEDISDD---------EEFSSSISGASIRPGIVHRLD 219
LHHC + T SS + D+ D D E+ SS + A +RPGIVHRLD
Sbjct: 174 LHHCKISTFTCLARSSAGDECPDSSDEDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLD 233
Query: 220 KGTSGLLVVAK 230
KGTSGLLVVAK
Sbjct: 234 KGTSGLLVVAK 244
>gi|357123160|ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like
[Brachypodium distachyon]
Length = 439
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/190 (62%), Positives = 141/190 (74%), Gaps = 14/190 (7%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+AG +LEE V G+ R+DAWIS+R+ G +SRARVQ+SIR+GLV++NG+ VSKVS V
Sbjct: 52 HAGTRLEEAVPAGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSQTV 111
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD V+CT+SELQPLRAEAEDIPLDIVYED+++LVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 112 KGGDTVSCTVSELQPLRAEAEDIPLDIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAI 171
Query: 173 LHHCSLPTLASSNQEAFSDAEDISD------------DEEFSSSISGASIRPGIVHRLDK 220
LHHC + T + + D S + E SS + A +RPGIVHRLDK
Sbjct: 172 LHHCKISTFTCLARNSIDDECPESSDDDIDVFDVDQFNGEVSSEVRDAIVRPGIVHRLDK 231
Query: 221 GTSGLLVVAK 230
GTSGLLVVAK
Sbjct: 232 GTSGLLVVAK 241
>gi|218198893|gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
Length = 445
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 118/191 (61%), Positives = 141/191 (73%), Gaps = 15/191 (7%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+ G +LEE V G+ R+DAWIS+R+ G +SRAR+Q+SIR+GLV +NG+ VSKVSH V
Sbjct: 56 HGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMV 115
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD+V+CT+SELQPLRAE EDIPLDIVYEDD++LVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 116 KGGDIVSCTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAI 175
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDE-------------EFSSSISGASIRPGIVHRLD 219
LHHC + T + + D S D+ E SS + A +RPGIVHRLD
Sbjct: 176 LHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLD 235
Query: 220 KGTSGLLVVAK 230
KGTSGLLVVAK
Sbjct: 236 KGTSGLLVVAK 246
>gi|388510382|gb|AFK43257.1| unknown [Lotus japonicus]
Length = 209
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/209 (57%), Positives = 148/209 (70%), Gaps = 13/209 (6%)
Query: 3 MLSLNSASWGSASCTKGLQFSPTKIPFGVFKILR-------ARCSS----SSSGGNNREP 51
M+ L+S+ + S + +F P +F AR SS +S G+ EP
Sbjct: 1 MILLHSSGYCRVSTPRAFKFQTPLSPSLLFSATNSKSRSAIARASSGFADNSDSGDGGEP 60
Query: 52 IANYAGVQLEETVDTK--AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVS 109
ANYAGVQLEE VD + +GK RLD+WIS+RI+GISRARVQSSI+SGLV +NG+VV+KVS
Sbjct: 61 RANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVS 120
Query: 110 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 169
NVK GD + CTI+ELQ LRA EDIPLDIVYED+++LV+NKPAHMVVHPAPGN GTLV
Sbjct: 121 FNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTFGTLV 180
Query: 170 NGILHHCSLPTLASSNQEAFSDAEDISDD 198
NGILHHC+LP SN++A + ED DD
Sbjct: 181 NGILHHCNLPNAEFSNEDALAYTEDSDDD 209
>gi|147771519|emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
Length = 611
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 138/244 (56%), Positives = 163/244 (66%), Gaps = 63/244 (25%)
Query: 31 VFKILRARCSSSSSGGNNREPI-------ANYAGVQLEETV---DTKAGKLRLDAWISSR 80
VF+ILR CS+S+ EP+ NYAGV+LEETV ++ +GKLRLD+WISSR
Sbjct: 162 VFRILRD-CSNSTD-----EPLVSVSSRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSR 215
Query: 81 IDGISRARVQSSIRSGLVSINGQVVSK---------------------------VSHNVK 113
I GISRARVQSSIRSGLVS+N ++V K VSH ++
Sbjct: 216 IIGISRARVQSSIRSGLVSVNDRIVDKAMLVSRKFEVGEGKKIEEKDPITYSEQVSHVIR 275
Query: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
GD VNCTISELQPLRAE EDIPLDIVYED++ VVHPAPGNA+GTLVNGIL
Sbjct: 276 AGDKVNCTISELQPLRAEPEDIPLDIVYEDEH----------VVHPAPGNASGTLVNGIL 325
Query: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG-------ASIRPGIVHRLDKGTSGLL 226
HHCSLPT+A N++ S+ +DI DD EF+S +G +IRPGIVHRLDKGTSGLL
Sbjct: 326 HHCSLPTVALPNRD--SEEDDILDD-EFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLL 382
Query: 227 VVAK 230
VVAK
Sbjct: 383 VVAK 386
>gi|115469990|ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 2; AltName:
Full=RNA-uridine isomerase 2; Flags: Precursor
gi|53791796|dbj|BAD53590.1| ribosomal large subunit pseudouridine synthase-like [Oryza sativa
Japonica Group]
gi|54291043|dbj|BAD61720.1| ribosomal large subunit pseudouridine synthase-like [Oryza sativa
Japonica Group]
gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa Japonica Group]
gi|215706335|dbj|BAG93191.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636236|gb|EEE66368.1| hypothetical protein OsJ_22675 [Oryza sativa Japonica Group]
Length = 445
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/191 (61%), Positives = 140/191 (73%), Gaps = 15/191 (7%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+ G +LEE V G+ R+DAWIS+R+ G +SRAR+Q+SIR+GLV +NG+ VSKVSH V
Sbjct: 56 HGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMV 115
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD+V+CT+ ELQPLRAE EDIPLDIVYEDD++LVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 116 KGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAI 175
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDE-------------EFSSSISGASIRPGIVHRLD 219
LHHC + T + + D S D+ E SS + A +RPGIVHRLD
Sbjct: 176 LHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLD 235
Query: 220 KGTSGLLVVAK 230
KGTSGLLVVAK
Sbjct: 236 KGTSGLLVVAK 246
>gi|356517956|ref|XP_003527651.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
chloroplastic-like [Glycine max]
Length = 441
Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/198 (60%), Positives = 145/198 (73%), Gaps = 25/198 (12%)
Query: 50 EPIANYAGVQLEETVDTK--AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSK 107
EP N++GV+LEE VD++ +GKLRLD WISSRI+GI RARVQSSI+SGLV +NG+VV K
Sbjct: 51 EPKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGIRRARVQSSIKSGLVHVNGRVVDK 110
Query: 108 VSHNVKGGDMVNCT--ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 165
VS NVK GD + CT I+ELQ LRA E+IPLDIVYED++VLV+NKPAHMV+ P N +
Sbjct: 111 VSFNVKSGDEIKCTIAIAELQNLRAVTENIPLDIVYEDEHVLVINKPAHMVI---PNNTS 167
Query: 166 GTLVNGILHHCSLPTLA-SSNQEAFSDAEDISDDEEFSS---------------SISGAS 209
G LVNGILHHC+LP + S +EA SD ED D+EF+S S++ S
Sbjct: 168 GMLVNGILHHCNLPNVEFSKEEEALSDTED--SDDEFNSYRSLASFCEGLNSRLSVASNS 225
Query: 210 IRPGIVHRLDKGTSGLLV 227
IR GIVHRLDKGTSGL V
Sbjct: 226 IRSGIVHRLDKGTSGLPV 243
>gi|18855035|gb|AAL79727.1|AC091774_18 putative ribosomal large subunit pseudouridine synthase [Oryza
sativa Japonica Group]
Length = 275
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 130/178 (73%), Gaps = 27/178 (15%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+ G +LEE V G+ R+DAWIS+R+ G +SRAR+Q+SIR+GLV +NG+ VSKVSH V
Sbjct: 56 HGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMV 115
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD+V+CT+ ELQPLRAE EDIPLDIVYEDD++LVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 116 KGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAI 175
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LHHC + T S +RPGIVHRLDKGTSGLLVVAK
Sbjct: 176 LHHCKISTFTS-------------------------LVRPGIVHRLDKGTSGLLVVAK 208
>gi|302795552|ref|XP_002979539.1| hypothetical protein SELMODRAFT_36043 [Selaginella moellendorffii]
gi|300152787|gb|EFJ19428.1| hypothetical protein SELMODRAFT_36043 [Selaginella moellendorffii]
Length = 229
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 109/179 (60%), Gaps = 23/179 (12%)
Query: 52 IANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHN 111
+ Y G EETV T R+D W+S ++ SRARVQ SIR GL +NG+ ++K S
Sbjct: 6 LGEYHGTIPEETVST-----RIDVWLSGQLPHTSRARVQDSIRKGLALVNGKTITKPSFP 60
Query: 112 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171
V GGD V CT+ PL A E I LDIV+EDD+V+VVNK A MVVHPAPG+ GTLVN
Sbjct: 61 VIGGDEVVCTLCGAAPLEATPEKIQLDIVHEDDHVIVVNKAADMVVHPAPGHYGGTLVNA 120
Query: 172 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ILHHC LP S F + IRPGIVHRLDKGTSGL+VVAK
Sbjct: 121 ILHHCGLPATPSR----FRGPRPV--------------IRPGIVHRLDKGTSGLIVVAK 161
>gi|302791942|ref|XP_002977737.1| hypothetical protein SELMODRAFT_107344 [Selaginella moellendorffii]
gi|300154440|gb|EFJ21075.1| hypothetical protein SELMODRAFT_107344 [Selaginella moellendorffii]
Length = 421
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 118/203 (58%), Gaps = 29/203 (14%)
Query: 52 IANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHN 111
+ Y G EETV T R+D W+S ++ SRARVQ SIR GL +NG+ ++K S
Sbjct: 34 LGEYHGTIPEETVST-----RIDVWLSGQLPHTSRARVQDSIRKGLALVNGKTITKPSFP 88
Query: 112 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171
V GGD V CT+ PL A E I LDIV+EDD+V+VVNK A MVVHPAPG+ GTLVN
Sbjct: 89 VIGGDEVVCTLCGAAPLEATPERIQLDIVHEDDHVIVVNKAADMVVHPAPGHYGGTLVNA 148
Query: 172 ILHHCSLPTLASS------------NQEAFSD--AEDISDDE--------EFSSSISGAS 209
ILHHC LP + S E S+ +D DE E S G
Sbjct: 149 ILHHCGLPAVEVSLPVMMDEESDDDEGEELSENGDQDYEKDEVEVHKARGETPSRFRGPR 208
Query: 210 --IRPGIVHRLDKGTSGLLVVAK 230
IRPGIVHRLDKGTSGL+VVAK
Sbjct: 209 PVIRPGIVHRLDKGTSGLIVVAK 231
>gi|303287646|ref|XP_003063112.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455748|gb|EEH53051.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 417
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 106/165 (64%), Gaps = 21/165 (12%)
Query: 72 RLDAWISSRID------GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL 125
RLDA+I++ GI+RARV +SI++GLV +NG V K S V GD++ +
Sbjct: 87 RLDAYIATHAPPSEGGGGITRARVVASIKAGLVDVNGVVARKASERVSPGDVIRVALKPT 146
Query: 126 QPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
P A EDIPLD+ YED++VLVVNKPA MVVHPAPG+++GTLVN +L C P + ++
Sbjct: 147 PPTEAAPEDIPLDVKYEDEHVLVVNKPAGMVVHPAPGHSSGTLVNAVLFRCGCPAMRVAS 206
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
A + A+ ++ RPGIVHRLDKGTSGL+VVAK
Sbjct: 207 GNA-NTADGVA--------------RPGIVHRLDKGTSGLIVVAK 236
>gi|159487279|ref|XP_001701661.1| RNA pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158280880|gb|EDP06636.1| RNA pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 338
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 107/158 (67%), Gaps = 11/158 (6%)
Query: 84 ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYED 143
+SRA+VQ+SI +GLV++NG+ VSK ++ GD V ++ P++A E IPLDI YED
Sbjct: 1 VSRAKVQASIAAGLVAVNGRPVSKAGQQLRAGDTVTASLLPPPPMQAIPEPIPLDIKYED 60
Query: 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSS 203
+++LV+NKPA MVVH APG+ TGTLVN +LHHCSLP L + E D E+ + SS
Sbjct: 61 EHLLVINKPAGMVVHVAPGHHTGTLVNALLHHCSLPALDLAPTEPGGDEEEEESAQLGSS 120
Query: 204 SISGAS-----------IRPGIVHRLDKGTSGLLVVAK 230
+ +S +RPGIVHR+DKGTSGL+VVAK
Sbjct: 121 RLLSSSSASSSSSGSRILRPGIVHRIDKGTSGLIVVAK 158
>gi|302846594|ref|XP_002954833.1| RNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
gi|300259808|gb|EFJ44032.1| RNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
Length = 343
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 102/159 (64%), Gaps = 6/159 (3%)
Query: 78 SSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPL 137
++R +SRA++Q+SI +GLV +NGQ +K S +K GD V C + P++A E IPL
Sbjct: 1 AARTQDVSRAKIQASIAAGLVLVNGQPAAKASQQLKAGDCVVCRLQPPPPMQALPEAIPL 60
Query: 138 DIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDIS- 196
DI YEDD+V+VVNKP+ MVVH APG+ GTLVN +LHHC+LP L +
Sbjct: 61 DIKYEDDHVIVVNKPSGMVVHVAPGHHHGTLVNALLHHCALPALDLDSSLDLDPDLGTGI 120
Query: 197 -----DDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SS S + +RPGIVHRLDKGTSGLLVVAK
Sbjct: 121 GTSSSSSCSTSSLSSSSCLRPGIVHRLDKGTSGLLVVAK 159
>gi|254423656|ref|ZP_05037374.1| pseudouridine synthase, RluA family [Synechococcus sp. PCC 7335]
gi|196191145|gb|EDX86109.1| pseudouridine synthase, RluA family [Synechococcus sp. PCC 7335]
Length = 309
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 101/171 (59%), Gaps = 24/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E TV+ A + RLD W++ ++ SR RVQ I G VS+NG+V + V GD +
Sbjct: 3 IERTVEAGAPE-RLDRWLADNVEAFSRNRVQQLIEQGAVSVNGEVCDRKKELVTAGDYII 61
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
++ E QP EDIPLDI+YEDD +L+VNKPA MVVHPAPG+ATGTLV+ +L +C
Sbjct: 62 LSVPEAQPYELTPEDIPLDILYEDDQLLIVNKPAGMVVHPAPGHATGTLVHALLFYCG-- 119
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + + G RPGIVHRLDK T+G +VVAK
Sbjct: 120 --------------------EQLTGVGGVQ-RPGIVHRLDKNTTGAMVVAK 149
>gi|422304578|ref|ZP_16391921.1| putative enzyme [Microcystis aeruginosa PCC 9806]
gi|389790244|emb|CCI13847.1| putative enzyme [Microcystis aeruginosa PCC 9806]
Length = 308
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 102/168 (60%), Gaps = 24/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
+++ K RLDAW+ S++ +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 5 SLEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVGQGDRLKITI 64
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ QPL+ AE I LDI+YEDD ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 65 PDSQPLQLSAEAIELDILYEDDYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLA 122
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 123 G----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|307154024|ref|YP_003889408.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7822]
gi|306984252|gb|ADN16133.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7822]
Length = 305
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 107/175 (61%), Gaps = 24/175 (13%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E T+ + GKLRLD W++ +I +SR+R+Q+ I G + +NG++ + V+ GD++
Sbjct: 1 MEITLQVEQGKLRLDVWLAQKIPDLSRSRLQNLIEQGNLRLNGKICTDKKTKVQQGDLLY 60
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
I ++PL + E+IPLD++YED+ ++++NKPA +VVHPAPG+ GTLVN +L HCS
Sbjct: 61 LFIPPVEPLNLQPEEIPLDVLYEDEQLIIINKPAGLVVHPAPGHEKGTLVNALLSHCS-- 118
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
LA G RPGIVHRLDK T+G LV+AK ++
Sbjct: 119 NLAGI----------------------GGVQRPGIVHRLDKDTTGALVIAKTDYA 151
>gi|199598373|ref|ZP_03211792.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
gi|258508458|ref|YP_003171209.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus GG]
gi|385828126|ref|YP_005865898.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
gi|199590692|gb|EDY98779.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
gi|257148385|emb|CAR87358.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus GG]
gi|259649771|dbj|BAI41933.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
Length = 306
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T++G R+D I++ +R++VQ ++ GLV++NG V K + V GD+V TI
Sbjct: 6 TITTESG--RIDKIITAHETTHTRSQVQKWLQDGLVTVNGNPV-KANFKVTAGDVVTVTI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E++PL+A AE IPL+IVYEDD V+VVNKP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 63 PEVKPLKAVAEPIPLEIVYEDDQVIVVNKPQGMVVHPAPGHPDGTLVNGLLYHTKLP--- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|229552260|ref|ZP_04440985.1| pseudouridylate synthase [Lactobacillus rhamnosus LMS2-1]
gi|258539670|ref|YP_003174169.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus Lc 705]
gi|385835319|ref|YP_005873093.1| RluA family pseudouridine synthase [Lactobacillus rhamnosus ATCC
8530]
gi|418070676|ref|ZP_12707951.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus R0011]
gi|421770413|ref|ZP_16207110.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
gi|421773631|ref|ZP_16210272.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP3]
gi|423077996|ref|ZP_17066683.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
gi|229314396|gb|EEN80369.1| pseudouridylate synthase [Lactobacillus rhamnosus LMS2-1]
gi|257151346|emb|CAR90318.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus Lc 705]
gi|355394810|gb|AER64240.1| pseudouridine synthase, RluA family protein [Lactobacillus
rhamnosus ATCC 8530]
gi|357540096|gb|EHJ24113.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus R0011]
gi|357552376|gb|EHJ34149.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
gi|411181631|gb|EKS48798.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP3]
gi|411182285|gb|EKS49437.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
Length = 306
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T++G R+D I++ +R++VQ ++ GLV++NG V K + V GD+V TI
Sbjct: 6 TITTESG--RIDKIITAHETTHTRSQVQKWLQDGLVTVNGNPV-KANFKVTAGDVVTVTI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E++PL+A AE IPL+IVYEDD V+VVNKP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 63 PEVKPLKAVAEPIPLEIVYEDDQVIVVNKPQGMVVHPAPGHPDGTLVNGLLYHTKLP--- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|428201072|ref|YP_007079661.1| RluA family pseudouridine synthase [Pleurocapsa sp. PCC 7327]
gi|427978504|gb|AFY76104.1| pseudouridine synthase, RluA family [Pleurocapsa sp. PCC 7327]
Length = 309
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 24/163 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD+++S R+ +SR+R+Q I G V +NGQ+ + V+ GD + TI QPL +
Sbjct: 13 RLDSYLSQRLPELSRSRLQKLIEQGNVQLNGQICTAKKTAVREGDRLQITIPPTQPLDLQ 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YEDD ++++NKPA +VVHPAPG+ GTLVN +L HC P LA
Sbjct: 73 PEEIPLDILYEDDYLIIINKPADLVVHPAPGHENGTLVNALLSHC--PNLA--------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
I G S RPGIVHRLDK T+G LV+AK F+
Sbjct: 122 ------------GIGGVS-RPGIVHRLDKDTTGALVIAKTEFA 151
>gi|412986880|emb|CCO15306.1| pseudouridine synthase, RluA family [Bathycoccus prasinos]
Length = 445
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 105/180 (58%), Gaps = 21/180 (11%)
Query: 72 RLDAWISS--RIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
RLDA+I+ R + I+R V SI +G V +NG K ++ V+ GD++ TI + L
Sbjct: 82 RLDAFIAENLREEKITRGAVARSIANGNVFVNGTKTMKKTYKVQRGDVIRLTIERAKSLT 141
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
AE EDI LD++YED++V+V+NKPA MVVHPAPG+++GTLVN +L+HC P L
Sbjct: 142 AEPEDIKLDVIYEDEDVIVINKPAGMVVHPAPGHSSGTLVNALLYHCGCPALVVQEGRKI 201
Query: 190 SDAEDISDDEE-------------------FSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ D ++ + ++RPGIVHRLDKGTSGLLV AK
Sbjct: 202 PKSLDFAEVQNEEEEDDDDDDDDDDEIMPYLGPEEEDTTVRPGIVHRLDKGTSGLLVCAK 261
>gi|297583963|ref|YP_003699743.1| RluA family pseudouridine synthase [Bacillus selenitireducens
MLS10]
gi|297142420|gb|ADH99177.1| pseudouridine synthase, RluA family [Bacillus selenitireducens
MLS10]
Length = 307
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 111/171 (64%), Gaps = 27/171 (15%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E TVD + GK RLD W++ + D SR+ QS I+ G V++N + SK ++ +K GD+V
Sbjct: 4 FEFTVD-EQGK-RLDKWLTDQSDDWSRSLTQSWIQEGYVTVNDET-SKANYKLKIGDVVR 60
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E++ L AED+ LDIVYED +V+VVNKPA MVVHPAPG+ +GTLVNG+++HC
Sbjct: 61 VKVPEVEELEITAEDLDLDIVYEDQDVIVVNKPAGMVVHPAPGHPSGTLVNGLMYHC--- 117
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 118 -------------QDL-------SGINGVA-RPGIVHRIDKDTSGLLMVAK 147
>gi|425464645|ref|ZP_18843955.1| putative enzyme [Microcystis aeruginosa PCC 9809]
gi|389833297|emb|CCI22302.1| putative enzyme [Microcystis aeruginosa PCC 9809]
Length = 308
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S++ +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVGQGDRLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL AE I LDI+YEDD ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLELTAEAIELDILYEDDYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 124 ----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|390438323|ref|ZP_10226804.1| putative enzyme [Microcystis sp. T1-4]
gi|389838270|emb|CCI30928.1| putative enzyme [Microcystis sp. T1-4]
Length = 308
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S++ +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVAQGDRLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLELTAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +VVAK
Sbjct: 124 ----------------------IGGVQRPGIVHRLDKDTTGAIVVAK 148
>gi|325295189|ref|YP_004281703.1| RluA family pseudouridine synthase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065637|gb|ADY73644.1| pseudouridine synthase, RluA family [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 313
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 109/170 (64%), Gaps = 25/170 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E VD++ RLD +I+S I ISR++ ++ I G VSING++V K S+ VK G+ V+
Sbjct: 3 EIVVDSEKKGKRLDQFIAS-IADISRSQAKNLIEDGEVSINGRIVKKPSYKVKEGETVSF 61
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I E PL + E+IPLDIVYED +V+V+NKPA +VVHPAPG+ +GTLVN +L++C
Sbjct: 62 EIPEPIPLDLQPENIPLDIVYEDKDVIVINKPAGLVVHPAPGHYSGTLVNALLYYC---- 117
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D + I+ ++RPGIVHRLDK T+GLLVVAK
Sbjct: 118 ---------KDFQGIN-----------GTLRPGIVHRLDKDTAGLLVVAK 147
>gi|425454973|ref|ZP_18834698.1| putative enzyme [Microcystis aeruginosa PCC 9807]
gi|389804214|emb|CCI16935.1| putative enzyme [Microcystis aeruginosa PCC 9807]
Length = 308
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S++ +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVAQGDRLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL+ AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLQLSAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 124 ----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|307243485|ref|ZP_07525636.1| pseudouridine synthase, RluA family [Peptostreptococcus stomatis
DSM 17678]
gi|306493129|gb|EFM65131.1| pseudouridine synthase, RluA family [Peptostreptococcus stomatis
DSM 17678]
Length = 310
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 103/167 (61%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + RLD +I+ + ISR+ VQ I+ GLV +N +V K S+ ++ GD + +
Sbjct: 13 VDQDSAGKRLDVFIADQYQDISRSYVQKLIKDGLVLVNEEV-KKASYKLEEGDRMEIAMP 71
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L A+DI LDIVYEDD++L+VNKP MVVHPAPGN GTLVN I++HC
Sbjct: 72 EPEVLEVLAQDIDLDIVYEDDDLLIVNKPQGMVVHPAPGNPDGTLVNAIMYHC------- 124
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SSI+G IRPGIVHR+DK TSGLLVVAK
Sbjct: 125 ---------------KDKLSSINGV-IRPGIVHRIDKNTSGLLVVAK 155
>gi|425442528|ref|ZP_18822771.1| putative enzyme [Microcystis aeruginosa PCC 9717]
gi|389716392|emb|CCH99374.1| putative enzyme [Microcystis aeruginosa PCC 9717]
Length = 308
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 99/167 (59%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S + +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSHLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVGQGDRLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL AE I LDI+YEDD ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLELTAEAIELDILYEDDYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 124 ----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|166367953|ref|YP_001660226.1| ribosomal large subunit pseudouridine synthase D [Microcystis
aeruginosa NIES-843]
gi|166090326|dbj|BAG05034.1| ribosomal large subunit pseudouridine synthase D [Microcystis
aeruginosa NIES-843]
Length = 308
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 99/167 (59%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S + +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSHLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVGQGDRLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL AE I LDI+YEDD ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLELTAEAIELDILYEDDYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 124 ----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|300812431|ref|ZP_07092861.1| pseudouridine synthase, RluA family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496598|gb|EFK31690.1| pseudouridine synthase, RluA family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 304
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 104/159 (65%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+R++ +++G V +NG+ SKVS+ V+ GD++ T+ L+PL+ E
Sbjct: 15 RLDKYLAGEMTNLSRSRIKELVQAGEVLVNGKK-SKVSYKVQKGDLIQVTVLPLEPLKLE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED++V+VVNKP MVVHPA G+ + TLVN +L+H
Sbjct: 74 AENIPLDIVYEDEDVIVVNKPQGMVVHPAAGHPSHTLVNALLYHTR-------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --DLADSPE--------GFRPGIVHRIDKDTSGLLMVAK 148
>gi|366085944|ref|ZP_09452429.1| 23S RNA-specific pseudouridylate synthase [Lactobacillus zeae KCTC
3804]
Length = 306
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 106/168 (63%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D I++ +R++VQ ++ GLV++NGQ V K ++ V GD++ +I
Sbjct: 6 TITTEQG--RIDKVITAHESTHTRSQVQKWLQDGLVTVNGQPV-KANYKVSLGDVIAVSI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL A AE IPLDIVYEDD V+VVNKP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 63 PEARPLEAVAEPIPLDIVYEDDQVIVVNKPQGMVVHPAPGHPDGTLVNGLLYHTDLP--- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|428305379|ref|YP_007142204.1| ribosomal large subunit pseudouridine synthase D [Crinalium
epipsammum PCC 9333]
gi|428246914|gb|AFZ12694.1| ribosomal large subunit pseudouridine synthase D [Crinalium
epipsammum PCC 9333]
Length = 331
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 99/160 (61%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD+W+++++ +SR+R+Q I G V IN Q+ S VK GD ++ TI E +P +
Sbjct: 39 FRLDSWLANQLANLSRSRIQKLITQGCVQINDQICSVKDTKVKLGDRIHVTIPEAEPPKT 98
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+AE+IPLDI+YEDD++L+VNKPA +VVHPA G+ TGTLVN +L HC L
Sbjct: 99 QAENIPLDILYEDDSLLIVNKPAGLVVHPAAGHETGTLVNALLAHCPL------------ 146
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I G RPGIVHRLDK T+G + +AK
Sbjct: 147 ------------SEIGGVQ-RPGIVHRLDKDTTGAIAIAK 173
>gi|425445524|ref|ZP_18825552.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|389734479|emb|CCI01876.1| putative enzyme [Microcystis aeruginosa PCC 9443]
Length = 308
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S++ +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVAQGDRLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL+ AE I L+I+YEDD ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLQLSAEAIDLEILYEDDYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 124 ----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|218438495|ref|YP_002376824.1| pseudouridine synthase [Cyanothece sp. PCC 7424]
gi|218171223|gb|ACK69956.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7424]
Length = 306
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 24/175 (13%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E ++ + GKLRLD W++ ++ +SR+R+Q+ I G + +NG + + VK GD ++
Sbjct: 1 MEIHLEVEQGKLRLDRWLAQKLPDLSRSRLQTLIEQGNLQLNGTICTDKKTLVKSGDRLH 60
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
I ++PL + +DIPLDI+YEDD ++++NKPA +VVHP+PG+ GTLVN +L HCS
Sbjct: 61 LLIPPVKPLDLQPQDIPLDILYEDDQLIIINKPAGLVVHPSPGHEQGTLVNALLSHCS-- 118
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
LA G RPGIVHRLDK T+G LVVAK ++
Sbjct: 119 NLAGI----------------------GGVQRPGIVHRLDKDTTGALVVAKTDYA 151
>gi|443667130|ref|ZP_21133855.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
DIANCHI905]
gi|159029548|emb|CAO87700.1| rluD [Microcystis aeruginosa PCC 7806]
gi|443331119|gb|ELS45796.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
DIANCHI905]
Length = 308
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S++ +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVGQGDRLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL+ AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLQLSAEAIDLDILYEDEYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 124 ----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|425435653|ref|ZP_18816100.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|425448767|ref|ZP_18828611.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|440753109|ref|ZP_20932312.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
TAIHU98]
gi|389679748|emb|CCH91466.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|389769929|emb|CCI05423.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|440177602|gb|ELP56875.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
TAIHU98]
Length = 308
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S++ +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVGQGDRLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLELSAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 124 ----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|425462108|ref|ZP_18841582.1| putative enzyme [Microcystis aeruginosa PCC 9808]
gi|389824925|emb|CCI25716.1| putative enzyme [Microcystis aeruginosa PCC 9808]
Length = 308
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S++ +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVGQGDRLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLELTAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 124 ----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|443320767|ref|ZP_21049847.1| pseudouridine synthase, RluA family [Gloeocapsa sp. PCC 73106]
gi|442789501|gb|ELR99154.1| pseudouridine synthase, RluA family [Gloeocapsa sp. PCC 73106]
Length = 310
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 105/176 (59%), Gaps = 28/176 (15%)
Query: 58 VQLEETVDTKAGKL--RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
+Q+E +D + RLD W++ ++ SRARVQ I GLV +NGQ+V++ +K G
Sbjct: 1 MQIERELDLQVDNQGDRLDRWLTEQLSDYSRARVQRLIDQGLVLVNGQIVTEKKTKLKIG 60
Query: 116 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
D ++ TI + PL + E I LDI+YEDD +L++NKPA +VVHPAPG+ +GT+VN +LHH
Sbjct: 61 DRLHLTIPKAVPLELQPEAIALDILYEDDFLLIINKPAGLVVHPAPGHDSGTVVNALLHH 120
Query: 176 C-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
C LP + G RPGIVHRLDK T+G +VVAK
Sbjct: 121 CPDLPGI-------------------------GEVKRPGIVHRLDKNTTGAMVVAK 151
>gi|425470428|ref|ZP_18849298.1| putative enzyme [Microcystis aeruginosa PCC 9701]
gi|389883962|emb|CCI35700.1| putative enzyme [Microcystis aeruginosa PCC 9701]
Length = 308
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLDAW+ S++ +SR+R+Q I G + +NGQ+ + + V GD + TI
Sbjct: 6 LEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVGQGDHLKITIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ QPL AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN +LHHC P LA
Sbjct: 66 DSQPLELTAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVNALLHHC--PNLAG 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 124 ----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
>gi|313123676|ref|YP_004033935.1| pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280239|gb|ADQ60958.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 304
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 104/159 (65%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+R++ +++G V +NG+ SKVS+ V+ GD++ T+ L+PL+ E
Sbjct: 15 RLDKYLAGEMTDLSRSRIKELVQAGEVLVNGKK-SKVSYKVQKGDLIQVTVLPLEPLKLE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED++++VVNKP MVVHPA G+ + TLVN +L+H
Sbjct: 74 AENIPLDIVYEDEDIIVVNKPQGMVVHPAAGHPSHTLVNALLYHTR-------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --DLADSPE--------GFRPGIVHRIDKDTSGLLMVAK 148
>gi|83815887|ref|YP_445314.1| ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber DSM 13855]
gi|83757281|gb|ABC45394.1| ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber DSM 13855]
Length = 349
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 13/173 (7%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
+T+ G R+D +++ SR ++Q +I+ G + +NG V K S+ V+ GD + +
Sbjct: 3 ETETGGPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGTDVKK-SYGVEPGDEIVFRLIR 61
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
P++AE E IPLD+V+E D++LVVNKPA MVVHPAPG+ +GTLV+ +LHH +A+
Sbjct: 62 KPPMQAEPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVDGGEVAAD 121
Query: 185 NQEAFSDAEDISDDE-------EFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ +++S+DE S +RPGIVHRLDKGTSGLLVVAK
Sbjct: 122 DER-----DEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAK 169
>gi|110635475|ref|YP_675683.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
gi|110286459|gb|ABG64518.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
Length = 343
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 111/197 (56%), Gaps = 30/197 (15%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P + G E D KA RLD W+++R+ SR+R+Q+ IR G V++NG+ V++
Sbjct: 3 DPDSEAGGGWKELLADEKAEGNRLDQWLAARLAPDFSRSRIQALIREGAVTLNGRTVAEP 62
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V G+ T+ E + + EDIPLDI+YED+ ++V++KPA +VVHP PGN TGTL
Sbjct: 63 KRKVAAGEFYCITLPEPEAPEPQGEDIPLDILYEDEALIVIDKPAGLVVHPGPGNWTGTL 122
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHC + S I G RPGIVHRLD+ TSG++VV
Sbjct: 123 VNALIHHCG----------------------DTLSGIGGVR-RPGIVHRLDRDTSGVMVV 159
Query: 229 AK------VIFSPFGNH 239
AK V+ F +H
Sbjct: 160 AKTDQAHRVLAEAFADH 176
>gi|294507190|ref|YP_003571248.1| ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber M8]
gi|294343518|emb|CBH24296.1| Ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber M8]
Length = 379
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 13/169 (7%)
Query: 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
G R+D +++ SR ++Q +I+ G + +NG V K S+ V+ GD + + P+
Sbjct: 37 GGPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGADVKK-SYGVEPGDEIVFRLIRKPPM 95
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
+AE E IPLD+V+EDD++LVVNKPA MVVHPAPG+ +GTLV+ +LHH +A+ ++
Sbjct: 96 QAEPEAIPLDVVHEDDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVDGGEVAADDER- 154
Query: 189 FSDAEDISDDE-------EFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+++S+DE S +RPGIVHRLDKGTSGLLVVAK
Sbjct: 155 ----DEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAK 199
>gi|427708515|ref|YP_007050892.1| ribosomal large subunit pseudouridine synthase D [Nostoc sp. PCC
7107]
gi|427361020|gb|AFY43742.1| ribosomal large subunit pseudouridine synthase D [Nostoc sp. PCC
7107]
Length = 312
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 98/174 (56%), Gaps = 26/174 (14%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+Q E + RLD +++ + ISR+R+Q I G V +N QV + NVK GD
Sbjct: 1 MQTEFNLQVSENSQRLDRYLAEELPDISRSRIQQFIEQGNVQVNDQVCTSKKVNVKAGDR 60
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC- 176
+ I E QPL +AEDIPLDI+YEDD +L++NKPA +VVHPAPG+ GTLVN +L HC
Sbjct: 61 ITLQIPEAQPLELQAEDIPLDILYEDDQLLILNKPAGLVVHPAPGHYDGTLVNALLAHCP 120
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+LP + G RPGIVHRLDK T+G + + K
Sbjct: 121 NLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIVK 149
>gi|365904068|ref|ZP_09441827.1| pseudouridine synthase [Lactobacillus versmoldensis KCTC 3814]
Length = 297
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 101/162 (62%), Gaps = 26/162 (16%)
Query: 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
GK+RLD +I ++ +SR+++ I+ +++N QV++K + + GD V+ TI +P+
Sbjct: 10 GKVRLDKFIDEQMSELSRSQISKFIKDSEITVNNQVITKTGYKLVNGDEVSFTIPAEKPI 69
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
A +DIPLDIVYEDD+VLVVNKP MVVHPA G+ GTLVN IL+H
Sbjct: 70 EAIPQDIPLDIVYEDDDVLVVNKPQGMVVHPAAGHRDGTLVNAILYHSK----------- 118
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+DD+ IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 ------INDDD---------LIRPGIVHRIDKDTSGLLMVAK 145
>gi|384250930|gb|EIE24408.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 352
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 98/157 (62%), Gaps = 15/157 (9%)
Query: 89 VQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 148
+Q++IR G V +N V SK ++ GD+V C + L L A EDIPLD+VYEDD++LV
Sbjct: 13 LQAAIRDGFVRVNEGVPSKPGLALRPGDVVACRLPPLPSLEASPEDIPLDVVYEDDHLLV 72
Query: 149 VNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD----AEDISDDEE---- 200
+NK A MV+HPAPGN TGTLV+ +LH LP++ S ++ D AE DEE
Sbjct: 73 INKAAGMVIHPAPGNYTGTLVSALLHRFGLPSVRLSADDSPGDELEAAESEDGDEERAVP 132
Query: 201 -------FSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S SG IRPGIVHRLDKGT+GL+V AK
Sbjct: 133 WALPETPMSVGQSGDVIRPGIVHRLDKGTTGLMVAAK 169
>gi|119513315|ref|ZP_01632353.1| Pseudouridine synthase, RluD [Nodularia spumigena CCY9414]
gi|119462022|gb|EAW43021.1| Pseudouridine synthase, RluD [Nodularia spumigena CCY9414]
Length = 309
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 104/174 (59%), Gaps = 32/174 (18%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+Q+EET + RLD ++S + +SR+R+Q I G V +N Q+ + VK GD
Sbjct: 6 LQVEETGE------RLDRYLSENLPNLSRSRIQQLIEQGNVHLNEQICTTKKITVKAGDR 59
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC- 176
+ I E+QPL+ +A+DIPLDI+YEDD++L++NKPA +VVHPAPG+ GTLVN +L HC
Sbjct: 60 ITLEIPEVQPLQVQAQDIPLDILYEDDHLLILNKPAGLVVHPAPGHPDGTLVNALLAHCP 119
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+LP + G RPGIVHRLDK T+G + +AK
Sbjct: 120 NLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIAK 148
>gi|422843703|ref|ZP_16890413.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325686216|gb|EGD28262.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 304
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 104/159 (65%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+R++ +++G V +NG+ SKVS+ V+ GD++ T+ L+PL+ E
Sbjct: 15 RLDKYLAGEMIDLSRSRIKELVQAGEVLVNGKK-SKVSYKVQKGDLIQVTVLPLEPLKLE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED++++VVNKP MVVHPA G+ + TLVN +L+H
Sbjct: 74 AENIPLDIVYEDEDIIVVNKPQGMVVHPAVGHPSHTLVNALLYHTR-------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --DLADSPE--------GFRPGIVHRIDKDTSGLLMVAK 148
>gi|407796629|ref|ZP_11143582.1| pseudouridine synthase [Salimicrobium sp. MJ3]
gi|407019145|gb|EKE31864.1| pseudouridine synthase [Salimicrobium sp. MJ3]
Length = 302
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D W+S ++ +SRA+VQ IR VS+N + V K ++ ++ GD+V ++ E++P E
Sbjct: 15 RIDKWLSDHLEDVSRAQVQQWIREHHVSVNDRHV-KSNYKIQEGDLVAWSVPEVKPAAIE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPL IVYED++VLVVNKP MVVHP+ G+ +GTLVNG+L+HC
Sbjct: 74 KENIPLTIVYEDEDVLVVNKPVGMVVHPSAGHYSGTLVNGLLYHC--------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 119 -----DD---LSGINGVE-RPGIVHRIDKDTSGLLMVAK 148
>gi|239631456|ref|ZP_04674487.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|417980747|ref|ZP_12621427.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|417984062|ref|ZP_12624690.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
gi|239525921|gb|EEQ64922.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|410525070|gb|EKP99977.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|410526714|gb|EKQ01596.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
Length = 306
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D I++ +R++VQ ++ GLV++NGQ +K ++ V GD++ +I
Sbjct: 6 TITTEQG--RIDKVITAHETTHTRSQVQKWLQDGLVTVNGQP-TKANYKVASGDVIAISI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 63 PEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTLVNGLLYHTDLP--- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|409351550|ref|ZP_11234218.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
gi|407876703|emb|CCK86276.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
Length = 302
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG LRLD +++ RID +SR+R++ ++G V +NG+ +KVS+ V+ GD +
Sbjct: 6 ELIVDQAG-LRLDKYLAERID-LSRSRIKDLAQAGQVLVNGKK-TKVSYKVEAGDQIEVN 62
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
I L+PL E E+IPLDIVYEDD+V+VVNKP MVVHPA G+ TLVN +L+H
Sbjct: 63 ILPLEPLDLEPENIPLDIVYEDDDVIVVNKPQGMVVHPAAGHPNHTLVNALLYHT----- 117
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL+VAK
Sbjct: 118 -----------RDLADSPE--------GFRPGIVHRIDKDTSGLLMVAK 147
>gi|417992968|ref|ZP_12633319.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
gi|410532377|gb|EKQ07085.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
Length = 291
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D I++ +R++VQ ++ GLV++NGQ +K ++ V GD++ +I
Sbjct: 6 TITTEQG--RIDKVITAHETTHTRSQVQKWLQDGLVTVNGQP-TKANYKVASGDVIAISI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 63 PEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTLVNGLLYHTDLP--- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|116494944|ref|YP_806678.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
ATCC 334]
gi|227535056|ref|ZP_03965105.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|301066507|ref|YP_003788530.1| 23S RNA-specific pseudouridylate synthase [Lactobacillus casei str.
Zhang]
gi|417986821|ref|ZP_12627386.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
gi|417999198|ref|ZP_12639410.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|418002143|ref|ZP_12642267.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|418010905|ref|ZP_12650676.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
gi|116105094|gb|ABJ70236.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei ATCC 334]
gi|227187271|gb|EEI67338.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|300438914|gb|ADK18680.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
str. Zhang]
gi|410524555|gb|EKP99463.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
gi|410539748|gb|EKQ14273.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|410544826|gb|EKQ19140.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|410553484|gb|EKQ27487.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
Length = 306
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D I++ +R++VQ ++ GLV++NGQ +K ++ V GD++ +I
Sbjct: 6 TITTEQG--RIDKVITAHETTHTRSQVQKWLQDGLVTVNGQP-TKANYKVASGDVIAISI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 63 PEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTLVNGLLYHTDLP--- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|385823357|ref|YP_005859699.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei BD-II]
gi|418005172|ref|ZP_12645168.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
gi|327385684|gb|AEA57158.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei BD-II]
gi|410547425|gb|EKQ21658.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
Length = 306
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D I++ +R++VQ ++ GLV++NGQ +K ++ V GD++ +I
Sbjct: 6 TITTEQG--RIDKVITAHETTHTRSQVQKWLQDGLVTVNGQP-TKANYKVASGDVIAISI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 63 PEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTLVNGLLYHTDLP--- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|417989705|ref|ZP_12630206.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|417996323|ref|ZP_12636604.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|418015330|ref|ZP_12654905.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
gi|410535634|gb|EKQ10251.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|410537450|gb|EKQ12024.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|410551806|gb|EKQ25849.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
Length = 306
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D I++ +R++VQ ++ GLV++NGQ +K ++ V GD++ +I
Sbjct: 6 TITTEQG--RIDKVITAHETTHTRSQVQKWLQDGLVTVNGQP-TKANYKVASGDVIAISI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 63 PEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTLVNGLLYHTDLP--- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|418008048|ref|ZP_12647919.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
gi|410547807|gb|EKQ22033.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
Length = 306
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D I++ +R++VQ ++ GLV++NGQ +K ++ V GD++ +I
Sbjct: 6 TITTEQG--RIDKVITAHETTHTRSQVQKWLQDGLVTVNGQP-TKANYKVASGDVIAISI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 63 PEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTLVNGLLYHTDLP--- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|408411254|ref|ZP_11182423.1| Pseudouridine synthase [Lactobacillus sp. 66c]
gi|407874547|emb|CCK84229.1| Pseudouridine synthase [Lactobacillus sp. 66c]
Length = 302
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG LRLD +++ RID +SR+R++ ++G V +NG+ +KVS+ V+ GD +
Sbjct: 6 ELIVDQAG-LRLDKYLAERID-LSRSRIKDLAQAGQVLVNGKK-AKVSYKVEAGDQIEVN 62
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
I L+PL E E+IPLDIVYEDD+V+VVNKP MVVHPA G+ TLVN +L+H
Sbjct: 63 ILPLEPLDLEPENIPLDIVYEDDDVIVVNKPQGMVVHPAAGHPNHTLVNALLYHT----- 117
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL+VAK
Sbjct: 118 -----------RDLADSPE--------GFRPGIVHRIDKDTSGLLMVAK 147
>gi|191638454|ref|YP_001987620.1| pseudouridine synthase [Lactobacillus casei BL23]
gi|385820159|ref|YP_005856546.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei LC2W]
gi|409997315|ref|YP_006751716.1| RNA pseudouridine synthase YlyB [Lactobacillus casei W56]
gi|190712756|emb|CAQ66762.1| Pseudouridine synthase [Lactobacillus casei BL23]
gi|327382486|gb|AEA53962.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei LC2W]
gi|406358327|emb|CCK22597.1| Uncharacterized RNA pseudouridine synthase YlyB [Lactobacillus
casei W56]
Length = 307
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D I++ +R++VQ ++ GLV++NGQ +K ++ V GD++ +I
Sbjct: 7 TITTEQG--RIDKVITAHETTHTRSQVQKWLQDGLVTVNGQP-TKANYKVASGDVIAISI 63
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTLVNG+L+H LP
Sbjct: 64 PEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTLVNGLLYHTDLP--- 120
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------------GINGV-IRPGIVHRIDKDTSGLLMVAK 146
>gi|452855493|ref|YP_007497176.1| pseudouridylate synthase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452079753|emb|CCP21510.1| pseudouridylate synthase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 304
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 107/172 (62%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E TV + R+D +++S + SR +VQ ++ GLVS+NG+ V K ++ ++ GD V
Sbjct: 3 QFEITVQLEQKSERIDKFLASTGENWSRTQVQQWVKEGLVSVNGKSV-KANYKMQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
N TI E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 NVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHVTGTLVNGLMAHCN- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|384265127|ref|YP_005420834.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898123|ref|YP_006328419.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens Y2]
gi|380498480|emb|CCG49518.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172233|gb|AFJ61694.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens Y2]
Length = 304
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 107/172 (62%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E TV + R+D +++S + SR +VQ ++ GLVS+NG+ V K ++ ++ GD V
Sbjct: 3 QFEITVQPEQKSERIDKFLASTGENWSRTQVQQWVKEGLVSVNGKSV-KANYKMQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
N TI E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 NVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHVTGTLVNGLMAHCN- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|154685962|ref|YP_001421123.1| hypothetical protein RBAM_015290 [Bacillus amyloliquefaciens FZB42]
gi|394993883|ref|ZP_10386622.1| YlyB [Bacillus sp. 916]
gi|429505097|ref|YP_007186281.1| hypothetical protein B938_07935 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154351813|gb|ABS73892.1| YlyB [Bacillus amyloliquefaciens FZB42]
gi|393805207|gb|EJD66587.1| YlyB [Bacillus sp. 916]
gi|429486687|gb|AFZ90611.1| hypothetical protein B938_07935 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 304
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 107/172 (62%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E TV + R+D +++S + SR +VQ ++ GLVS+NG+ V K ++ ++ GD V
Sbjct: 3 QFEITVQPEQKSERIDKFLASTGENWSRTQVQQWVKEGLVSVNGKSV-KANYKMQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
N TI E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 NVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHVTGTLVNGLMAHCN- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|385264670|ref|ZP_10042757.1| RNA pseudouridylate synthase [Bacillus sp. 5B6]
gi|385149166|gb|EIF13103.1| RNA pseudouridylate synthase [Bacillus sp. 5B6]
Length = 304
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 107/172 (62%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E TV + R+D +++S + SR +VQ ++ GLVS+NG+ V K ++ ++ GD V
Sbjct: 3 QFEITVQPEQKSERIDKFLASTGENWSRTQVQQWVKEGLVSVNGKSV-KANYKMQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
N TI E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 NVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHVTGTLVNGLMAHCN- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|375362190|ref|YP_005130229.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731785|ref|ZP_16170908.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451347084|ref|YP_007445715.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens IT-45]
gi|371568184|emb|CCF05034.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073998|gb|EKE46988.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449850842|gb|AGF27834.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens IT-45]
Length = 304
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 107/172 (62%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E TV + R+D +++S + SR +VQ ++ GLVS+NG+ V K ++ ++ GD V
Sbjct: 3 QFEITVQPEQKSERIDKFLASTGENWSRTQVQQWVKEGLVSVNGKSV-KANYKMQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
N TI E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 NVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHVTGTLVNGLMAHCN- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|308173508|ref|YP_003920213.1| pseudouridylate synthase [Bacillus amyloliquefaciens DSM 7]
gi|384159472|ref|YP_005541545.1| pseudouridylate synthase [Bacillus amyloliquefaciens TA208]
gi|384164092|ref|YP_005545471.1| pseudouridylate synthase [Bacillus amyloliquefaciens LL3]
gi|384168520|ref|YP_005549898.1| pseudouridylate synthase [Bacillus amyloliquefaciens XH7]
gi|307606372|emb|CBI42743.1| pseudouridylate synthase [Bacillus amyloliquefaciens DSM 7]
gi|328553560|gb|AEB24052.1| pseudouridylate synthase [Bacillus amyloliquefaciens TA208]
gi|328911647|gb|AEB63243.1| pseudouridylate synthase [Bacillus amyloliquefaciens LL3]
gi|341827799|gb|AEK89050.1| putative pseudouridylate synthase [Bacillus amyloliquefaciens XH7]
Length = 304
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 107/172 (62%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E TV + R+D +++S + SR +VQ ++ GLVS+NG+ V K ++ ++ GD V
Sbjct: 3 QFEITVQPEQKSERIDKFLASTGENWSRTQVQQWVKEGLVSVNGKSV-KANYKMQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
N TI E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 NVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHVTGTLVNGLMAHCN- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|319789350|ref|YP_004150983.1| pseudouridine synthase, RluA family [Thermovibrio ammonificans
HB-1]
gi|317113852|gb|ADU96342.1| pseudouridine synthase, RluA family [Thermovibrio ammonificans
HB-1]
Length = 314
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 99/161 (61%), Gaps = 25/161 (15%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K RLD +++ ISR++ + I GLV +NG+ V K ++ VK G+ V + E +P+
Sbjct: 8 KQRLDQFVAEAAQ-ISRSQAKEIIEKGLVKVNGKTVQKPAYKVKEGERVEFEVPEPEPIE 66
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
+ E IPL+++YED +V+V+NKPA MVVHPAPG+ +GTLVN +LHHC
Sbjct: 67 VKPEAIPLEVIYEDQDVIVINKPAGMVVHPAPGHYSGTLVNALLHHC------------- 113
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D I G ++RPGIVHRLDK T+GL+VVAK
Sbjct: 114 KDLGGI-----------GGALRPGIVHRLDKDTAGLIVVAK 143
>gi|295100789|emb|CBK98334.1| ribosomal large subunit pseudouridine synthase D [Faecalibacterium
prausnitzii L2-6]
Length = 310
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 102/172 (59%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E V+ +A R+D ++S G+SR+ +Q + G V NG+ ++K S +K GD +
Sbjct: 3 QREFIVEAEAAGQRIDRFLSGEDTGLSRSALQGLVAEGHVLCNGKSIAK-SLKLKAGDTI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I + +P+ A +DIPLDIVYEDD++LVVNKP MVVHPAPGN GTLVN +L HC
Sbjct: 62 LLEIPDAKPIEAVPQDIPLDIVYEDDHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S S G IRPGIVHR+DK TSGLLVVAK
Sbjct: 120 ---------------------KGSLSGIGGEIRPGIVHRIDKDTSGLLVVAK 150
>gi|407975175|ref|ZP_11156081.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
indicus C115]
gi|407429260|gb|EKF41938.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
indicus C115]
Length = 349
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 100/172 (58%), Gaps = 24/172 (13%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E VD A RLD W+S+ + + +SR+RVQ+ IR+G VS V++ H V G+
Sbjct: 20 EFRVDKDAAGERLDRWLSAMLGEAVSRSRVQTLIRAGAVSCGDAPVTEPKHKVASGETYG 79
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E +P E IPLDI+YED +++VVNKPA +VVHPAPGN TGTLVN +LHHC
Sbjct: 80 LEMPEAEPAEPLPEPIPLDILYEDADLVVVNKPAGLVVHPAPGNWTGTLVNALLHHCG-- 137
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKV 231
+ S I G RPGIVHRLD+ TSG++VVAK
Sbjct: 138 --------------------DTLSGIGGVR-RPGIVHRLDRDTSGVMVVAKT 168
>gi|190893167|ref|YP_001979709.1| RNA-pseudouridylate synthase, ribosomal large subunit D [Rhizobium
etli CIAT 652]
gi|190698446|gb|ACE92531.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli CIAT 652]
Length = 354
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 116/201 (57%), Gaps = 32/201 (15%)
Query: 31 VFKILRARCSSSSSGGNNREPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARV 89
V KI R R S +P AG++ T D A + RLDAW+++++ + SR+R+
Sbjct: 4 VLKIRRRRSVLS-------DPFKQAAGIRKVLTADETA-EGRLDAWLTAQLGEEFSRSRI 55
Query: 90 QSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149
+ I+ G VS+ GQ+++ V+ GD T+ E + + EDIPLDI+YEDD+++V+
Sbjct: 56 KVLIKDGQVSMRGQLITDPQRKVRAGDSFEITLPEPEDPTPQGEDIPLDILYEDDDLIVI 115
Query: 150 NKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS 209
+KPA +VVHP GN TGTLVN ++HHC TL S I G
Sbjct: 116 SKPAGLVVHPGSGNWTGTLVNALIHHCGA-TL---------------------SGIGGVR 153
Query: 210 IRPGIVHRLDKGTSGLLVVAK 230
RPGIVHRLDK T+G++VVAK
Sbjct: 154 -RPGIVHRLDKDTTGVMVVAK 173
>gi|17228018|ref|NP_484566.1| hypothetical protein alr0522 [Nostoc sp. PCC 7120]
gi|9957317|gb|AAG09315.1| hypothetical protein [Nostoc sp. PCC 7120]
gi|17129867|dbj|BAB72480.1| alr0522 [Nostoc sp. PCC 7120]
Length = 312
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 96/160 (60%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ + +SR+R+Q I G V +NG+V + N+K GD + + E QPL +
Sbjct: 15 RIDRYLAEELPDLSRSRIQQLIEQGKVQVNGKVCTSKKINLKVGDRITLEVPEAQPLEIQ 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
AEDIPLDI+YEDD +L++NKPA +VVHPAPG++ GTLVN +L HC LP +
Sbjct: 75 AEDIPLDILYEDDQLLILNKPAGLVVHPAPGHSHGTLVNALLAHCPDLPGI--------- 125
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 126 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 149
>gi|354565422|ref|ZP_08984597.1| pseudouridine synthase, RluA family [Fischerella sp. JSC-11]
gi|353549381|gb|EHC18823.1| pseudouridine synthase, RluA family [Fischerella sp. JSC-11]
Length = 315
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 97/164 (59%), Gaps = 26/164 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ R+ +SR+RVQ I G V +NG++ + +VK GD + I +PL
Sbjct: 14 RLDRYLTERLTDLSRSRVQQLIEQGQVQLNGKICTSKKTSVKQGDRICLEIPPAEPLELT 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
A+DIPLDI+YEDD +L++NKPA +VVHPAPG+ GTLVN IL HC +LP +
Sbjct: 74 AQDIPLDILYEDDQLLILNKPAGLVVHPAPGHPDGTLVNAILAHCPNLPGI--------- 124
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
G RPGIVHRLDK T+G + +AK F+
Sbjct: 125 ----------------GGVQRPGIVHRLDKDTTGAIAIAKTEFA 152
>gi|75909134|ref|YP_323430.1| ribosomal large subunit pseudouridine synthase D [Anabaena
variabilis ATCC 29413]
gi|75702859|gb|ABA22535.1| ribosomal large subunit pseudouridine synthase D [Anabaena
variabilis ATCC 29413]
Length = 312
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 26/171 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E ++ + R+D +++ + +SR+R+Q I G V +NG+V + N+K GD +
Sbjct: 4 EFYLEVEENSARIDRYLAEELPDLSRSRIQQLIEQGKVQVNGKVCTSKKINLKVGDRITL 63
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLP 179
+ E QPL +AEDIPLDI+YEDD +L++NKPA +VVHPAPG++ GTLVN +L HC LP
Sbjct: 64 EVPEAQPLELQAEDIPLDILYEDDQLLILNKPAGLVVHPAPGHSHGTLVNALLAHCPHLP 123
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ G RPGIVHRLDK T+G + +AK
Sbjct: 124 GI-------------------------GGVQRPGIVHRLDKDTTGAIAIAK 149
>gi|443315971|ref|ZP_21045436.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
gi|442784409|gb|ELR94284.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
Length = 306
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 95/159 (59%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD W+S+ + +SR R+Q I V++NGQ+ + V+ GD++ T+ E QPL
Sbjct: 11 RLDRWLSAHLPDLSRNRLQKLIDGEYVTLNGQLCTDKKRLVQAGDIICLTLPEAQPLELT 70
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IPLDI+YEDD++++VNKPA +VVHPAPGN +GTLVN +L HC
Sbjct: 71 PESIPLDILYEDDHLIIVNKPAGLVVHPAPGNRSGTLVNALLAHCG-------------- 116
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E I G RPGIVHRLDK T+G +VVAK
Sbjct: 117 --------EGLLGIGGVQ-RPGIVHRLDKDTTGAIVVAK 146
>gi|434398133|ref|YP_007132137.1| ribosomal large subunit pseudouridine synthase D [Stanieria
cyanosphaera PCC 7437]
gi|428269230|gb|AFZ35171.1| ribosomal large subunit pseudouridine synthase D [Stanieria
cyanosphaera PCC 7437]
Length = 314
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 26/168 (15%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV+ K+ RLD W+SS++ +SR+R+Q I G V +NGQV + + GD + TI
Sbjct: 11 TVEQKSD--RLDRWLSSQLTDLSRSRLQKLIEEGNVHLNGQVCTSKKIKLSPGDCLEVTI 68
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+PL +AEDIPLDI+YED++++++NKPA +VVHPAPG+ TGTLV+ +L HC LA
Sbjct: 69 PSPEPLNLQAEDIPLDILYEDEDLIIINKPADLVVHPAPGHETGTLVHALLSHCD--NLA 126
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +V+AK
Sbjct: 127 GI----------------------GGIKRPGIVHRLDKDTTGAIVIAK 152
>gi|298492053|ref|YP_003722230.1| RluA family pseudouridine synthase ['Nostoc azollae' 0708]
gi|298233971|gb|ADI65107.1| pseudouridine synthase, RluA family ['Nostoc azollae' 0708]
Length = 329
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 96/160 (60%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++SS + +SR+R+Q I G V +N QV + NVK GD + I LQPL+
Sbjct: 34 RLDLYLSSELQNLSRSRLQQLIEQGHVLLNDQVCTSKKVNVKVGDRICVEIPSLQPLKLV 93
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFS 190
AEDIPLDI+YED+ +L++NKPA +VVHPAPG+ GTLVN +L HC+ LP +
Sbjct: 94 AEDIPLDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVNALLAHCANLPGI--------- 144
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 145 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 168
>gi|336392300|ref|ZP_08573699.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
gi|420146122|ref|ZP_14653559.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402202|gb|EJN55574.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 304
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 102/168 (60%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV T++G RLD ISS + +SRA+VQ I++ V +NGQ+ K + V GD + +I
Sbjct: 9 TVTTESG--RLDKVISSHFEELSRAQVQQLIKTEHVQVNGQL-EKAKYAVAAGDQITVSI 65
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
L + ++IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN +L+H L
Sbjct: 66 PAPAALDVQPQNIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPQDTLVNALLYHSPL---- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 122 --------------------STINGV-IRPGIVHRIDKDTSGLLMVAK 148
>gi|172038237|ref|YP_001804738.1| pseudouridine synthase [Cyanothece sp. ATCC 51142]
gi|354554410|ref|ZP_08973715.1| pseudouridine synthase, RluA family [Cyanothece sp. ATCC 51472]
gi|171699691|gb|ACB52672.1| pseudouridine synthase [Cyanothece sp. ATCC 51142]
gi|353554089|gb|EHC23480.1| pseudouridine synthase, RluA family [Cyanothece sp. ATCC 51472]
Length = 314
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 26/172 (15%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV+ K RLD W+S+++ ISR+ +Q I G + +N +V + VK GD + +
Sbjct: 6 TVENKGN--RLDLWLSNQLTDISRSHIQRLIEQGNIILNNEVCTNKKIKVKIGDRLQINL 63
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL + E +PLDI+YED+ ++++NKPA++VVHPAPG+ TGTLV+G+L+HCS LA
Sbjct: 64 PEPKPLELKPEPLPLDILYEDEQLIIINKPANLVVHPAPGHETGTLVHGLLYHCS--NLA 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
G RPGIVHRLDK T+G +VVAK F+
Sbjct: 122 G----------------------IGGVQRPGIVHRLDKDTTGAMVVAKTDFA 151
>gi|268611664|ref|ZP_06145391.1| RluA family pseudouridine synthase [Ruminococcus flavefaciens FD-1]
Length = 304
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 100/161 (62%), Gaps = 28/161 (17%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +IS ++ ++R+ VQ + G + ++G+ VSK ++ ++ GD V I E +P+ A
Sbjct: 17 RIDKFISDNVEELTRSAVQGLMEKGKILVSGKSVSK-NYKLRDGDTVEVEIPEPEPMDAL 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPLDIVYED ++LVVNKP MVVHPA GN +GTLVN +LHHC
Sbjct: 76 PEDIPLDIVYEDSDLLVVNKPKGMVVHPAHGNHSGTLVNALLHHC--------------- 120
Query: 192 AEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
S+SG + IRPGIVHR+DK TSGLL+VAK
Sbjct: 121 ----------GDSLSGINGVIRPGIVHRIDKNTSGLLIVAK 151
>gi|295425512|ref|ZP_06818204.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
amylolyticus DSM 11664]
gi|295064803|gb|EFG55719.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
amylolyticus DSM 11664]
Length = 302
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 105/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E TV+ + G RLD +++ +ID +SR RV+ I GL+ +N Q V K S+ VK GD +
Sbjct: 4 KYELTVENEKG--RLDKYLADKIDDLSRTRVKELIDDGLILVN-QKVEKASYKVKDGDAI 60
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ ++PL E+IPLDI+YED++V+VVNKP MVVHPA G+ TLVN +L+H
Sbjct: 61 EVTVPAVKPLDVIPENIPLDIIYEDNDVIVVNKPQGMVVHPAAGHPDHTLVNALLYHTK- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LASS E F RPGIVHR+DK TSGLL++AK
Sbjct: 120 -DLASS-PEGF---------------------RPGIVHRIDKDTSGLLMIAK 148
>gi|319781137|ref|YP_004140613.1| RluA family pseudouridine synthase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167025|gb|ADV10563.1| pseudouridine synthase, RluA family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 346
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 24/167 (14%)
Query: 65 DTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
D A RLD W+++R+ +SR+RVQ IR G VS++G+++ + + G+ V+ T+
Sbjct: 22 DADAAGQRLDQWLAARLGPDMSRSRVQMLIRQGAVSVDGKLIDETKRKMAPGESVSVTMP 81
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E +P + E+I LD++YEDD ++V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 82 EPEPAEPQGENIALDVLYEDDELIVINKPAGLVVHPGAGNWTGTLVNALIHHCG------ 135
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 136 ----------------DSLSGIGGVR-RPGIVHRLDKETSGVMVVAK 165
>gi|424780438|ref|ZP_18207311.1| Ribosomal large subunit pseudouridine synthase D [Catellicoccus
marimammalium M35/04/3]
gi|422842840|gb|EKU27287.1| Ribosomal large subunit pseudouridine synthase D [Catellicoccus
marimammalium M35/04/3]
Length = 301
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 107/168 (63%), Gaps = 27/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D +++ +R+++Q+ ++ G+V++NG+ +K ++ V GD ++ T
Sbjct: 7 TITTEKG--RIDKVLANLFPEYTRSKLQTWVKEGIVTVNGKP-TKSNYKVATGDQISFTP 63
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL AE ++IPLDI+YED++V+V+NKP MVVHP+PG+ GTLVNG+L+H L
Sbjct: 64 QEDKPLTAEPQNIPLDIIYEDEDVIVINKPQGMVVHPSPGHPDGTLVNGLLYHTQL---- 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S + +IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------------SEMEEGTIRPGIVHRIDKDTSGLLMVAK 147
>gi|398831174|ref|ZP_10589353.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
gi|398212742|gb|EJM99344.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
Length = 350
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 101/167 (60%), Gaps = 24/167 (14%)
Query: 65 DTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
D A RLDAW+S+++ +SR R+QS I SG V+I+G+VVS+ H ++ G + +
Sbjct: 23 DNDAAGKRLDAWLSAQLAPDLSRNRIQSLISSGQVTIDGKVVSETKHKLRDGMNIEIIVP 82
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + EDIPLDI+YED +++V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 83 EPEDATPTGEDIPLDILYEDTDLVVINKPAGLVVHPGNGNWTGTLVNALIHHCG------ 136
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 137 ----------------DTLSGIGGVK-RPGIVHRLDKETSGVIVVAK 166
>gi|423084352|ref|ZP_17072857.1| pseudouridine synthase, RluA family [Clostridium difficile
002-P50-2011]
gi|423088048|ref|ZP_17076433.1| pseudouridine synthase, RluA family [Clostridium difficile
050-P50-2011]
gi|357542657|gb|EHJ24699.1| pseudouridine synthase, RluA family [Clostridium difficile
002-P50-2011]
gi|357543576|gb|EHJ25593.1| pseudouridine synthase, RluA family [Clostridium difficile
050-P50-2011]
Length = 315
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ ++ +SR+ +Q I+ G V +N +V K + VK D + I E + L
Sbjct: 29 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKAKYLVKEEDNIVIEIPEPKVLEVL 87
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNGIL+HC
Sbjct: 88 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHC--------------- 132
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 133 -------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAK 163
>gi|254976188|ref|ZP_05272660.1| putative pseudouridylate synthase [Clostridium difficile QCD-66c26]
gi|255093577|ref|ZP_05323055.1| putative pseudouridylate synthase [Clostridium difficile CIP
107932]
gi|255315322|ref|ZP_05356905.1| putative pseudouridylate synthase [Clostridium difficile QCD-76w55]
gi|255517989|ref|ZP_05385665.1| putative pseudouridylate synthase [Clostridium difficile QCD-97b34]
gi|255651105|ref|ZP_05398007.1| putative pseudouridylate synthase [Clostridium difficile QCD-37x79]
gi|384361812|ref|YP_006199664.1| pseudouridylate synthase [Clostridium difficile BI1]
Length = 315
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ ++ +SR+ +Q I+ G V +N +V K + VK D + I E + L
Sbjct: 29 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKAKYLVKEEDNIVIEIPEPKVLEVL 87
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNGIL+HC
Sbjct: 88 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHC--------------- 132
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 133 -------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAK 163
>gi|187734524|ref|YP_001876636.1| RluA family pseudouridine synthase [Akkermansia muciniphila ATCC
BAA-835]
gi|187424576|gb|ACD03855.1| pseudouridine synthase, RluA family [Akkermansia muciniphila ATCC
BAA-835]
Length = 323
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T D GK+RLD ++++ + +SR+R+QS I+SG V +NG +K + V GD + I
Sbjct: 4 TTDDADGKIRLDQYLAAHLPELSRSRIQSLIKSGDVLVNGSP-AKPKNPVSRGDSITVRI 62
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +P A+ +DIPLDI+YED++V+V+NK + MVVHPA GN GT+VN +LHHC
Sbjct: 63 PEPEPAEAQPQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCG----- 117
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I G RPGIVHRLDK TSG LV+AK
Sbjct: 118 -----------DL-------SGIGGVE-RPGIVHRLDKDTSGCLVIAK 146
>gi|416391378|ref|ZP_11685677.1| Ribosomal large subunit pseudouridine synthase D [Crocosphaera
watsonii WH 0003]
gi|357263860|gb|EHJ12816.1| Ribosomal large subunit pseudouridine synthase D [Crocosphaera
watsonii WH 0003]
Length = 313
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 98/163 (60%), Gaps = 24/163 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD W+S+++ ISR+R+Q I G +++N +V +K GD + I E QPL +
Sbjct: 13 RLDIWLSNQLTDISRSRIQKLIEQGNITLNNEVCPNKKIKLKIGDRLQVNIPEPQPLELQ 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IPLDI+YED+ ++++NK A++VVHPAPG+ TGTLV+ +L+HCS LA
Sbjct: 73 PEPIPLDILYEDEQLIIINKSANLVVHPAPGHETGTLVHALLYHCS--NLAGI------- 123
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
G RPGIVHRLDK T+G +VVAK F+
Sbjct: 124 ---------------GGGQRPGIVHRLDKDTTGAIVVAKTDFA 151
>gi|392382839|ref|YP_005032036.1| pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356877804|emb|CCC98656.1| pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 350
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 104/187 (55%), Gaps = 33/187 (17%)
Query: 54 NYAGVQLEET---------VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSI-NGQ 103
Y G Q ET V AG RLD ++S + G+SR+RVQ+ + G V G+
Sbjct: 13 EYTGTQDGETGEGTRQRWSVPDDAGGQRLDKALASGLPGLSRSRVQALLEKGCVQDGTGR 72
Query: 104 VVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 163
V+ S VK G + I E +P + EA+DIPLD+VYED++VLV++KPA MVVHPA GN
Sbjct: 73 TVTDPSMKVKPGQTFDVFIPEAEPAQPEAQDIPLDVVYEDEDVLVIDKPAGMVVHPAAGN 132
Query: 164 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223
GTLVN +L HC + S I G RPGIVHRLDK TS
Sbjct: 133 PDGTLVNALLAHCG----------------------DSLSGIGGVR-RPGIVHRLDKDTS 169
Query: 224 GLLVVAK 230
GL+VVAK
Sbjct: 170 GLMVVAK 176
>gi|255656576|ref|ZP_05401985.1| putative pseudouridylate synthase [Clostridium difficile QCD-23m63]
gi|296449972|ref|ZP_06891736.1| ribosomal large subunit pseudouridine synthase D [Clostridium
difficile NAP08]
gi|296878353|ref|ZP_06902361.1| ribosomal large subunit pseudouridine synthase D [Clostridium
difficile NAP07]
gi|296261242|gb|EFH08073.1| ribosomal large subunit pseudouridine synthase D [Clostridium
difficile NAP08]
gi|296430651|gb|EFH16490.1| ribosomal large subunit pseudouridine synthase D [Clostridium
difficile NAP07]
Length = 315
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ ++ +SR+ +Q I+ G V +N ++ K + VK D + I E + L
Sbjct: 29 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKI-EKAKYLVKEEDNIVIEIPEPKVLEVV 87
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNGIL+HC
Sbjct: 88 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHC--------------- 132
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 133 -------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAK 163
>gi|442805040|ref|YP_007373189.1| pseudouridine synthase RluA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740890|gb|AGC68579.1| pseudouridine synthase RluA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 306
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 100/172 (58%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
++E TVD RLDA++S +I +SR +Q I LV +NGQ +K G +
Sbjct: 6 EIEITVDENEAGQRLDAFLSGKIPDVSRNYIQKLIEDNLVLVNGQS-TKAKVRTYPGMKI 64
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ + +PLR + E+IPLDIVYED ++L++NKP +MVVHPAPGN TLVN +L+HC
Sbjct: 65 TVYVPQPEPLRVKPENIPLDIVYEDSDILIINKPRNMVVHPAPGNEDNTLVNAVLYHCG- 123
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SD I IRPGIVHR+DK T+GL+ VAK
Sbjct: 124 --------DSLSDINGI--------------IRPGIVHRIDKDTTGLIAVAK 153
>gi|260684170|ref|YP_003215455.1| pseudouridylate synthase [Clostridium difficile CD196]
gi|260687829|ref|YP_003218963.1| pseudouridylate synthase [Clostridium difficile R20291]
gi|260210333|emb|CBA64669.1| putative pseudouridylate synthase [Clostridium difficile CD196]
gi|260213846|emb|CBE05842.1| putative pseudouridylate synthase [Clostridium difficile R20291]
Length = 303
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ ++ +SR+ +Q I+ G V +N +V K + VK D + I E + L
Sbjct: 17 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKAKYLVKEEDNIVIEIPEPKVLEVL 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNGIL+HC
Sbjct: 76 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHC--------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 121 -------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAK 151
>gi|295105659|emb|CBL03203.1| ribosomal large subunit pseudouridine synthase D [Faecalibacterium
prausnitzii SL3/3]
Length = 310
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 101/172 (58%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E V+ + R+D ++S G+SR+ +Q+ + G V NG+ V+K S +K GD V
Sbjct: 3 QREFIVEQETAGQRIDRFLSGEDTGLSRSALQALVAEGHVQCNGKTVAK-SLKLKAGDTV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I + +P+ A +DIPL+IVYED ++LVVNKP MVVHPAPGN GTLVN +L HC
Sbjct: 62 LLEIPDAKPIEAVPQDIPLEIVYEDSHLLVVNKPKGMVVHPAPGNQDGTLVNALLWHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S S G IRPGIVHR+DK TSGLLVVAK
Sbjct: 120 ---------------------KGSLSGIGGEIRPGIVHRIDKDTSGLLVVAK 150
>gi|255101761|ref|ZP_05330738.1| putative pseudouridylate synthase [Clostridium difficile QCD-63q42]
gi|255307629|ref|ZP_05351800.1| putative pseudouridylate synthase [Clostridium difficile ATCC
43255]
gi|423092627|ref|ZP_17080431.1| pseudouridine synthase, RluA family [Clostridium difficile
70-100-2010]
gi|357553497|gb|EHJ35244.1| pseudouridine synthase, RluA family [Clostridium difficile
70-100-2010]
Length = 315
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ ++ +SR+ +Q I+ G V +N +V K + VK D + I E + L
Sbjct: 29 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKARYLVKEEDNIVIEIPEPKVLEVL 87
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNGIL+HC
Sbjct: 88 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHC--------------- 132
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 133 -------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAK 163
>gi|313114073|ref|ZP_07799625.1| pseudouridine synthase, RluA family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623482|gb|EFQ06885.1| pseudouridine synthase, RluA family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 310
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 103/172 (59%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E V+ + R+D ++S G+SR+ +Q+ + G V NG++V+K S +K GD +
Sbjct: 3 QREFVVEQETAGQRIDRFLSGEDTGLSRSALQALVADGHVLCNGRLVAK-SLKLKAGDTI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I + +P+ A +DIPL+IVYED+++LVVNKP MVVHPAPGN GTLVN +L HC
Sbjct: 62 VLEIPDAKPIEAVPQDIPLEIVYEDEHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S S G IRPGIVHR+DK TSGLLVVAK
Sbjct: 120 ---------------------KGSLSGIGGEIRPGIVHRIDKDTSGLLVVAK 150
>gi|67920300|ref|ZP_00513820.1| Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501]
gi|67857784|gb|EAM53023.1| Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501]
Length = 313
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 98/163 (60%), Gaps = 24/163 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD W+S+++ ISR+R+Q I G +++N +V +K GD + I E QPL +
Sbjct: 13 RLDIWLSNQLTDISRSRIQKLIEQGNITLNNEVCPNKKIKLKIGDRLQVNIPEPQPLELQ 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IPLDI+YED+ ++++NK A++VVHPAPG+ TGTLV+ +L+HCS LA
Sbjct: 73 PEPIPLDILYEDEQLIIINKSANLVVHPAPGHETGTLVHALLYHCS--NLAGI------- 123
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
G RPGIVHRLDK T+G +VVAK F+
Sbjct: 124 ---------------GGVQRPGIVHRLDKDTTGAIVVAKTDFA 151
>gi|325680269|ref|ZP_08159829.1| pseudouridine synthase, RluA family [Ruminococcus albus 8]
gi|324107978|gb|EGC02234.1| pseudouridine synthase, RluA family [Ruminococcus albus 8]
Length = 304
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 100/159 (62%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +S+++ +SR+ +Q G V + G+ VSK ++ +K GD++ I E Q L+AE
Sbjct: 17 RIDKLLSAQLSDMSRSALQKLTEDGSVLVGGKAVSK-NYKLKNGDVITVDIPEPQELKAE 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD +LVVNKP MVVHPA GN GTLVN +L+HC
Sbjct: 76 PQDIPIDIVYEDDALLVVNKPKGMVVHPAAGNPDGTLVNALLYHC--------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 121 -------KGRLSSINGV-IRPGIVHRIDKFTSGLLMVAK 151
>gi|333394895|ref|ZP_08476714.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
Length = 304
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 101/168 (60%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV T+ G RLD ISS + +SRA+VQ I++ V +NGQ+ K + V GD + +I
Sbjct: 9 TVTTENG--RLDKVISSHFEELSRAQVQQLIKTEHVQVNGQL-EKAKYAVAAGDQITVSI 65
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
L + ++IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN +L+H L
Sbjct: 66 PAPAALDVQPQNIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPQDTLVNALLYHSPL---- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 122 --------------------STINGV-IRPGIVHRIDKDTSGLLMVAK 148
>gi|126700216|ref|YP_001089113.1| pseudouridylate synthase, RluC/RluD family [Clostridium difficile
630]
gi|115251653|emb|CAJ69486.1| putative pseudouridylate synthase, RluC/RluD family [Clostridium
difficile 630]
Length = 303
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ ++ +SR+ +Q I+ G V +N +V K + VK D + I E + L
Sbjct: 17 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKARYLVKEEDNIVIEIPEPKVLEVL 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNGIL+HC
Sbjct: 76 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHC--------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 121 -------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAK 151
>gi|317056645|ref|YP_004105112.1| RluA family pseudouridine synthase [Ruminococcus albus 7]
gi|315448914|gb|ADU22478.1| pseudouridine synthase, RluA family [Ruminococcus albus 7]
Length = 304
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 99/159 (62%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +S ++ +SR+ +Q + G V +NG +VSK ++ +K D ++ I E + L+AE
Sbjct: 17 RIDKVLSKQLPEMSRSSLQKLVNDGCVLVNGNIVSK-NYKIKNSDTISVEIPEAEELKAE 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD++LVVNKP MVVHPA GN GTLVN +L HC
Sbjct: 76 PQDIPIDIVYEDDSLLVVNKPQGMVVHPAAGNPDGTLVNALLFHCKGRL----------- 124
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 125 -----------SSINGV-IRPGIVHRIDKFTSGLLMVAK 151
>gi|227878615|ref|ZP_03996537.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256843219|ref|ZP_05548707.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256850423|ref|ZP_05555851.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|293380626|ref|ZP_06626679.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295692991|ref|YP_003601601.1| pseudouridine synthase [Lactobacillus crispatus ST1]
gi|312977447|ref|ZP_07789195.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|423318686|ref|ZP_17296563.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
gi|227861792|gb|EEJ69389.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256614639|gb|EEU19840.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256712820|gb|EEU27813.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|290922813|gb|EFD99762.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295031097|emb|CBL50576.1| Pseudouridine synthase [Lactobacillus crispatus ST1]
gi|310895878|gb|EFQ44944.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|405593417|gb|EKB66865.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
Length = 303
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 25/170 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E +++ K K RLD ++S +I +SR RV+ ++ + +NG+V KVS+ ++ GD +
Sbjct: 4 EYSLEVKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEV 62
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I ++PL E+IPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 63 NIPAVKPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK--A 120
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LA S + RPGIVHR+DK TSGLL++AK
Sbjct: 121 LAQSPE----------------------GFRPGIVHRIDKDTSGLLMIAK 148
>gi|434395257|ref|YP_007130204.1| ribosomal large subunit pseudouridine synthase D [Gloeocapsa sp.
PCC 7428]
gi|428267098|gb|AFZ33044.1| ribosomal large subunit pseudouridine synthase D [Gloeocapsa sp.
PCC 7428]
Length = 309
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 100/172 (58%), Gaps = 26/172 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ +A RLD +++ + +SR+R+Q I G V +N +V + +K GD + I
Sbjct: 5 IQVQAQSDRLDRYLAQELSDLSRSRIQHLIEQGQVQLNDRVCTSKKITIKPGDRITVEIP 64
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLA 182
+ QPL + EDIPLDI+YEDD++L++NKPA +VVHPAPG+A GTLVN +L HC +LP +
Sbjct: 65 DAQPLDLQPEDIPLDILYEDDSLLIINKPAGLVVHPAPGHAGGTLVNALLAHCPNLPGI- 123
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
G RPGIVHRLDK T+G + +AK F+
Sbjct: 124 ------------------------GGVQRPGIVHRLDKDTTGAIAIAKTDFA 151
>gi|427718924|ref|YP_007066918.1| ribosomal large subunit pseudouridine synthase D [Calothrix sp. PCC
7507]
gi|427351360|gb|AFY34084.1| ribosomal large subunit pseudouridine synthase D [Calothrix sp. PCC
7507]
Length = 312
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 95/160 (59%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+R+Q I G V +N QV + NVK GD + I +QPL +
Sbjct: 15 RLDRYLAEELSDLSRSRIQQLIEQGNVHLNDQVCTSKKINVKVGDRIFVEIPAVQPLELQ 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
AEDIPLDI+YEDD +L++NKPA +VVHPAPG+ GTLVN +L HC +LP +
Sbjct: 75 AEDIPLDILYEDDQLLILNKPAGLVVHPAPGHPGGTLVNALLAHCPNLPGI--------- 125
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 126 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 149
>gi|18310832|ref|NP_562766.1| hypothetical protein CPE1850 [Clostridium perfringens str. 13]
gi|110801362|ref|YP_696533.1| RluA family pseudouridine synthase [Clostridium perfringens ATCC
13124]
gi|168206096|ref|ZP_02632101.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|168210787|ref|ZP_02636412.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|422346519|ref|ZP_16427433.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|422874769|ref|ZP_16921254.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
gi|18145514|dbj|BAB81556.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110676009|gb|ABG84996.1| pseudouridine synthase, RluA family [Clostridium perfringens ATCC
13124]
gi|170662443|gb|EDT15126.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|170711120|gb|EDT23302.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|373226064|gb|EHP48391.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|380304410|gb|EIA16699.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
Length = 306
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 100/160 (62%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R D +++ +IDG+SR +Q G + ING+ K + + GD V I E + L+
Sbjct: 17 IRADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKV 75
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAEDIPL+IVYED++V+VVNKP MVVHPAPGN TGTLVN +LHHC
Sbjct: 76 EAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC-------------- 121
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 122 ------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAK 151
>gi|182625703|ref|ZP_02953472.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
gi|177909105|gb|EDT71580.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
Length = 306
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 100/160 (62%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R D +++ +IDG+SR +Q G + ING+ K + + GD V I E + L+
Sbjct: 17 IRADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKV 75
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAEDIPL+IVYED++V+VVNKP MVVHPAPGN TGTLVN +LHHC
Sbjct: 76 EAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC-------------- 121
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 122 ------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAK 151
>gi|169343529|ref|ZP_02864528.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
gi|169298089|gb|EDS80179.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
Length = 306
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 100/160 (62%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R D +++ +IDG+SR +Q G + ING+ K + + GD V I E + L+
Sbjct: 17 IRADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKV 75
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAEDIPL+IVYED++V+VVNKP MVVHPAPGN TGTLVN +LHHC
Sbjct: 76 EAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHC-------------- 121
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 122 ------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAK 151
>gi|160945091|ref|ZP_02092317.1| hypothetical protein FAEPRAM212_02610 [Faecalibacterium prausnitzii
M21/2]
gi|158442822|gb|EDP19827.1| pseudouridine synthase, RluA family [Faecalibacterium prausnitzii
M21/2]
Length = 310
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 101/172 (58%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E V+ + R+D ++S G+SR+ +Q+ + G V NG+ V+K S +K GD V
Sbjct: 3 QREFIVEQETAGQRIDRFLSGEDTGLSRSALQALVAEGHVQCNGKAVAK-SLKLKAGDTV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I + +P+ A +DIPL+IVYED ++LVVNKP MVVHPAPGN GTLVN +L HC
Sbjct: 62 LLEIPDAKPIEAVPQDIPLEIVYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S S G IRPGIVHR+DK TSGLLVVAK
Sbjct: 120 ---------------------KGSLSGIGGEIRPGIVHRIDKDTSGLLVVAK 150
>gi|262046428|ref|ZP_06019390.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
gi|260573299|gb|EEX29857.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
Length = 303
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 25/170 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E +++ K K RLD ++S +I +SR RV+ ++ + +NG+V KVS+ ++ GD +
Sbjct: 4 EYSLEVKNEKGRLDKFVSEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEV 62
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I ++PL E+IPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 63 NIPAVKPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHSK--A 120
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LA S + RPGIVHR+DK TSGLL++AK
Sbjct: 121 LAQSPE----------------------GFRPGIVHRIDKDTSGLLMIAK 148
>gi|418029431|ref|ZP_12667971.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354689937|gb|EHE89903.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 304
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+R++ +++G + +NG+ SKVS+ V+ D++ + L+PL+ E
Sbjct: 15 RLDKYLAGEMTDLSRSRIKELVQAGEILVNGKK-SKVSYKVQKDDLIQVIVLPLEPLKLE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED +V+VVNKP MVVHPA G+ + TLVN +L+H
Sbjct: 74 AENIPLDIVYEDKDVIVVNKPQGMVVHPAAGHPSHTLVNALLYHTR-------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --DLADSPE--------GFRPGIVHRIDKDTSGLLMVAK 148
>gi|116514036|ref|YP_812942.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|385815689|ref|YP_005852080.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418035576|ref|ZP_12674032.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|116093351|gb|ABJ58504.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|325125726|gb|ADY85056.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|354690106|gb|EHE90061.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 304
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+R++ +++G + +NG+ SKVS+ V+ D++ + L+PL+ E
Sbjct: 15 RLDKYLAGEMTDLSRSRIKELVQAGEILVNGKK-SKVSYKVQKDDLIQVIVLPLEPLKLE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED +V+VVNKP MVVHPA G+ + TLVN +L+H
Sbjct: 74 AENIPLDIVYEDKDVIVVNKPQGMVVHPAAGHPSHTLVNALLYHTR-------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --DLADSPE--------GFRPGIVHRIDKDTSGLLMVAK 148
>gi|300867006|ref|ZP_07111676.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300334989|emb|CBN56842.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 319
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 27/179 (15%)
Query: 58 VQLEETVDTKAGKL--RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
+Q+E+ KL RLD W+S+ + +SR+R+Q+ I G V++N + NVK G
Sbjct: 9 IQVEDIGKPTESKLSQRLDLWLSNELPDLSRSRIQNLILQGNVTVNDLICKSKKENVKNG 68
Query: 116 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
D ++ I + +PL + E IPLDI+YED++++++NKPA +VVHPA G+ GTLVN +L H
Sbjct: 69 DRIHIAIPDAEPLDLKPEAIPLDILYEDESLIIINKPAGLVVHPAAGHPGGTLVNALLAH 128
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
C L + G +RPGIVHRLDK TSG +VVAK F+
Sbjct: 129 CPLAEI-------------------------GGVLRPGIVHRLDKDTSGAIVVAKTDFA 162
>gi|186683943|ref|YP_001867139.1| RluA family pseudouridine synthase [Nostoc punctiforme PCC 73102]
gi|186466395|gb|ACC82196.1| pseudouridine synthase, RluA family [Nostoc punctiforme PCC 73102]
Length = 345
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 97/167 (58%), Gaps = 28/167 (16%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
DTK R+D ++S + +SR+R+Q I G V +N +V + NVK GD + I E
Sbjct: 45 DTKGD--RIDRFLSQELPDLSRSRIQQLIEQGNVQLNDKVCTSKKINVKLGDRITLEIPE 102
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLAS 183
QPL AEDIPLDI+YEDD +L++NKPA +VVHPAPG+ GTLVN +L HC +LP +
Sbjct: 103 AQPLELLAEDIPLDILYEDDQLLILNKPAGLVVHPAPGHPDGTLVNALLAHCPNLPGI-- 160
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 161 -----------------------GGVQRPGIVHRLDKDTTGAIAIAK 184
>gi|411119450|ref|ZP_11391830.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
gi|410711313|gb|EKQ68820.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
Length = 322
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 104/174 (59%), Gaps = 18/174 (10%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
V++E VD + R+D++++ +++ +SR+R+Q I V ING V + V GD
Sbjct: 4 AVEVECLVDVEDAGDRIDSFLTDQLEDLSRSRIQKLISQKQVLINGTVCTSKKEIVNQGD 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++ I + +PL + E+IPLDI+YEDD +L++NKPA MVVHP+PG++ GTLVN +L HC
Sbjct: 64 LIRVQIPDAEPLDIQPENIPLDILYEDDELLIINKPAGMVVHPSPGHSQGTLVNALLWHC 123
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ E S I G RPGIVHRLDK T+G + VAK
Sbjct: 124 R-----------------TTNGESTLSGIGGVQ-RPGIVHRLDKDTTGAICVAK 159
>gi|306520956|ref|ZP_07407303.1| putative pseudouridylate synthase [Clostridium difficile QCD-32g58]
Length = 453
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ ++ +SR+ +Q I+ G V +N +V K + VK D + I E + L
Sbjct: 167 RLDIYLAEQLGDMSRSYIQKIIKDGKVKVNNKV-EKAKYLVKEEDNIVIEIPEPKVLEVL 225
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNGIL+HC
Sbjct: 226 PQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNGILYHC--------------- 270
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 271 -------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAK 301
>gi|104774018|ref|YP_618998.1| pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423099|emb|CAI97824.1| Pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 303
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+R++ +++G + +NG+ SKVS+ V+ D++ + L+PL+ E
Sbjct: 15 RLDKYLAGEMTDLSRSRIKELVQAGEILVNGKK-SKVSYKVQKDDLIQVIVLPLEPLKLE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED +V+VVNKP MVVHPA G+ + TLVN +L+H
Sbjct: 74 AENIPLDIVYEDKDVIVVNKPQGMVVHPAAGHPSHTLVNALLYHTR-------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --DLADSPE--------GFRPGIVHRIDKDTSGLLMVAK 148
>gi|158320450|ref|YP_001512957.1| RluA family pseudouridine synthase [Alkaliphilus oremlandii OhILAs]
gi|158140649|gb|ABW18961.1| pseudouridine synthase, RluA family [Alkaliphilus oremlandii
OhILAs]
Length = 308
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 29/171 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
LEE VD RLD +IS + + +SR+ +Q I+ + +NG++ K + +K GD +
Sbjct: 9 LEEDVDN-----RLDLYISEQYEELSRSYIQKLIKDHHIKVNGKI-EKAKYMIKLGDEIE 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ +++ + E E+IPL IVYED++V+VV+KP MVVHPAPGN +GTLVN +L HC
Sbjct: 63 INLPQVEEVTIEPENIPLTIVYEDEDVIVVDKPQGMVVHPAPGNYSGTLVNALLFHC--- 119
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
NQ S ++G +RPGIVHR+DK TSGLLVVAK
Sbjct: 120 ----KNQ---------------LSDVNGP-MRPGIVHRIDKDTSGLLVVAK 150
>gi|423321680|ref|ZP_17299551.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
gi|405591797|gb|EKB65265.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
Length = 303
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 102/170 (60%), Gaps = 25/170 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E +++ K K RLD +++ +I +SR RV+ ++ + +NG+V KVS+ ++ GD +
Sbjct: 4 EYSLEVKNEKGRLDKFVAEQIPDLSRTRVKELVKDQNILVNGKV-EKVSYKIQAGDKIEV 62
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I ++PL E+IPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 63 NIPAVKPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK--A 120
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LA S + RPGIVHR+DK TSGLL++AK
Sbjct: 121 LAQSPE----------------------GFRPGIVHRIDKDTSGLLMIAK 148
>gi|308805484|ref|XP_003080054.1| ribosomal large subunit pseudouridine syn (ISS) [Ostreococcus
tauri]
gi|116058513|emb|CAL53702.1| ribosomal large subunit pseudouridine syn (ISS) [Ostreococcus
tauri]
Length = 422
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 109/187 (58%), Gaps = 37/187 (19%)
Query: 72 RLDAWISSRI--DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
RLDA+++S + SRARV +I++ +V +NG+ K + VK GD+V EL+ R
Sbjct: 68 RLDAYVASSVVDASASRARVARAIKASMVKVNGKTERKPARGVKPGDIVE---GELEGER 124
Query: 130 AEAEDIP-----LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL--- 181
+E IP LDIVYED++VLVV KPA MV HP+ G+A GTLVN +L HC LP L
Sbjct: 125 -RSEAIPEPSIELDIVYEDESVLVVCKPAGMVTHPSAGHARGTLVNAVLGHCDLPELVVP 183
Query: 182 ------------------ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223
S E+ SDAE SD ++ SIRPGIVHRLD+GTS
Sbjct: 184 TGRVSNRMNEDGDFDDDDGPSTSESDSDAESASDSDD-----DAGSIRPGIVHRLDRGTS 238
Query: 224 GLLVVAK 230
G++VVAK
Sbjct: 239 GVMVVAK 245
>gi|428226934|ref|YP_007111031.1| ribosomal large subunit pseudouridine synthase D [Geitlerinema sp.
PCC 7407]
gi|427986835|gb|AFY67979.1| ribosomal large subunit pseudouridine synthase D [Geitlerinema sp.
PCC 7407]
Length = 323
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 98/167 (58%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + RLD+W++ ++ +SR+R+Q I G VS+NG V S ++ GD + I
Sbjct: 21 VDGVSSTPRLDSWLAEQVPDLSRSRIQKLIAQGQVSVNGAVCSSKKAVLQAGDRIEIVIP 80
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+PL + E IPLDI+YEDD++L++NKPA MVVHPAPG++ GTLV+ +L HC
Sbjct: 81 APEPLDLQPEAIPLDILYEDDSLLILNKPAGMVVHPAPGHSEGTLVHALLAHCD------ 134
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S + G RPGIVHRLDK T+G LV+AK
Sbjct: 135 ------------------SLAGIGGVQRPGIVHRLDKETTGALVIAK 163
>gi|427731293|ref|YP_007077530.1| RluA family pseudouridine synthase [Nostoc sp. PCC 7524]
gi|427367212|gb|AFY49933.1| pseudouridine synthase, RluA family [Nostoc sp. PCC 7524]
Length = 312
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 96/160 (60%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+R+Q I G V +NG+V + +VK GD + I E QPL +
Sbjct: 15 RLDRYLAEELPDLSRSRIQQLIEQGKVQLNGRVCTSKKISVKVGDRITLEIPEAQPLELK 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
AE+IPLDI+YED+ +L++NKPA +VVHPAPG+ GTLVN +L HC +LP +
Sbjct: 75 AENIPLDILYEDEQLLILNKPAGLVVHPAPGHPDGTLVNALLAHCPNLPGI--------- 125
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 126 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 149
>gi|421593555|ref|ZP_16038104.1| pseudouridine synthase [Rhizobium sp. Pop5]
gi|403700490|gb|EJZ17642.1| pseudouridine synthase [Rhizobium sp. Pop5]
Length = 341
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 110/182 (60%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P AG++ T D A + RLDAW+++++ + SR+R+++ I+ G VS+ G+ V+
Sbjct: 3 DPFKQAAGIRKVLTADETA-EGRLDAWLTAQVGEEFSRSRIKALIKDGQVSMRGEPVTDP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD T+ E + + E+IPLDI++ED++++V++KPA +VVHP PGN TGTL
Sbjct: 62 QRKVRAGDSFEITLPEPEDPTPQGENIPLDILHEDEDLIVISKPAGLVVHPGPGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHC + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIHHCG----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|381182085|ref|ZP_09890907.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Listeriaceae bacterium TTU M1-001]
gi|380318001|gb|EIA21298.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Listeriaceae bacterium TTU M1-001]
Length = 306
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 101/159 (63%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +S D +SR+ +QS ++SG + +N + V K ++ V+ GD + I E+ L AE
Sbjct: 16 RLDKALSELTD-LSRSLIQSMLKSGDILVNNESV-KANYKVQTGDTITYQIREVTELVAE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPLDI YED +VLVVNKP MVVHPA G+ +GTLVN +L+HC
Sbjct: 74 AEDIPLDIYYEDKDVLVVNKPQGMVVHPAAGHMSGTLVNALLYHC--------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -QDL-------SGINGV-IRPGIVHRIDKDTSGLLMVAK 148
>gi|225018395|ref|ZP_03707587.1| hypothetical protein CLOSTMETH_02342 [Clostridium methylpentosum
DSM 5476]
gi|224948813|gb|EEG30022.1| hypothetical protein CLOSTMETH_02342 [Clostridium methylpentosum
DSM 5476]
Length = 308
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 101/166 (60%), Gaps = 29/166 (17%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
+AG+ RLD ++ + + G +R+ +Q I V G+ ++K H ++ G+ ++ TI + +
Sbjct: 13 QAGE-RLDKFLPTVLPGYTRSALQKLIEGEQVRCEGEPLNK-KHKLRAGETISVTIPDPE 70
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
PL E+IPLDI+YED ++LVVNKP HMVVHPA GN TGTLVN +LHHC
Sbjct: 71 PLDVLPEEIPLDILYEDSDLLVVNKPKHMVVHPAAGNYTGTLVNALLHHC---------- 120
Query: 187 EAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
S+SG + IRPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------RGSLSGINGVIRPGIVHRIDKDTSGLLIVAK 151
>gi|402297359|ref|ZP_10817131.1| large ribosomal pseudouridine synthesis protein [Bacillus
alcalophilus ATCC 27647]
gi|401727409|gb|EJT00599.1| large ribosomal pseudouridine synthesis protein [Bacillus
alcalophilus ATCC 27647]
Length = 304
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +I+S+ + SR +VQ I+ V +NG VV K ++ V D V ++ E + L E
Sbjct: 16 RIDKFITSQQEDWSRTQVQQWIKDKRVKVNGNVV-KSNYKVSDLDQVEVSVPEPEVLEVE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIV+ED++V+VVNKP MVVHPAPG+ +GTLVN +++HC
Sbjct: 75 AENIPLDIVFEDEDVIVVNKPRGMVVHPAPGHYSGTLVNALMYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 -KDL-------SGINGV-IRPGIVHRIDKDTSGLLMVAK 149
>gi|414076345|ref|YP_006995663.1| pseudouridine synthase [Anabaena sp. 90]
gi|413969761|gb|AFW93850.1| pseudouridine synthase [Anabaena sp. 90]
Length = 311
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S + +SR+R+Q I G V IN + + N+K GD++ I +QPL
Sbjct: 15 RLDRYLSQELSDLSRSRIQQLIEQGHVQINNLICTSKKINLKTGDLITLEIPTVQPLAIS 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
AE+IPLDI+YEDD ++++NKPA +VVHPAPG+ GTLVN IL HC +LP +
Sbjct: 75 AENIPLDILYEDDELIIINKPAGLVVHPAPGHPDGTLVNAILAHCPNLPGI--------- 125
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 126 ----------------GGIQRPGIVHRLDKDTTGAIAIAK 149
>gi|56419681|ref|YP_146999.1| hypothetical protein GK1146 [Geobacillus kaustophilus HTA426]
gi|261419335|ref|YP_003253017.1| pseudouridine synthase [Geobacillus sp. Y412MC61]
gi|297530695|ref|YP_003671970.1| pseudouridine synthase [Geobacillus sp. C56-T3]
gi|319766151|ref|YP_004131652.1| pseudouridine synthase [Geobacillus sp. Y412MC52]
gi|56379523|dbj|BAD75431.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261375792|gb|ACX78535.1| pseudouridine synthase, RluA family [Geobacillus sp. Y412MC61]
gi|297253947|gb|ADI27393.1| pseudouridine synthase, RluA family [Geobacillus sp. C56-T3]
gi|317111017|gb|ADU93509.1| pseudouridine synthase, RluA family [Geobacillus sp. Y412MC52]
Length = 304
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 100/159 (62%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D I++ + SR++VQ I++GLV++NGQ V K ++ + GD V + E +PL E
Sbjct: 16 RIDKVIAALNEEWSRSQVQQWIKNGLVTVNGQTV-KANYKCEAGDSVAVSPPEPEPLHVE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IPLDI YED++VLVVNKP MVVHPAPG+ GTLVN +L HC
Sbjct: 75 PEPIPLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCR-------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 --DL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|398382437|ref|ZP_10540524.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
gi|397717523|gb|EJK78140.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
Length = 341
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLDAW+++++D +SR+RVQ+ I++ V +NG V+
Sbjct: 3 DPFKEAAGNRKVLTADETA-EGRLDAWLTAQMDEELSRSRVQTLIKANAVLLNGTPVTDA 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD+ ++ E + + EDIPLD+++EDD+V+V++KPA +VVHP GN TGTL
Sbjct: 62 KRKVRPGDIYEISMPEPEDPTPQGEDIPLDVLFEDDDVIVISKPAGLVVHPGAGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHC + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIHHCG----------------------DSLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|158335489|ref|YP_001516661.1| RluA family pseudouridine synthase [Acaryochloris marina MBIC11017]
gi|158305730|gb|ABW27347.1| pseudouridine synthase, RluA family [Acaryochloris marina
MBIC11017]
Length = 328
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 21/172 (12%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE +V+ A R+D W+++++D +SR+ +Q I G V IN ++ + + ++ GD V
Sbjct: 3 KLEFSVEGSAA--RIDRWLANQVDSLSRSHIQKLIEQGHVQINHKICTSKKYALQIGDQV 60
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I QPL E E + L+I++EDD++L+VNKPA +VVHPAPG+ATGTLV+G+L HC
Sbjct: 61 EVHIPAPQPLALEPEPMDLEILFEDDHLLIVNKPAGLVVHPAPGHATGTLVHGLLAHC-- 118
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D + + S G RPGIVHRLDK T+G ++VAK
Sbjct: 119 -----------------QDGQGSTLSGIGGVERPGIVHRLDKDTTGAIMVAK 153
>gi|222086840|ref|YP_002545374.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
gi|221724288|gb|ACM27444.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
Length = 343
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLDAW+++++D +SR+RVQ+ I++ V +NG V+
Sbjct: 5 DPFKEAAGNRKVLTADETA-EGRLDAWLTAQMDEELSRSRVQALIKANAVLLNGTPVTDA 63
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD+ ++ E + + EDIPLD+++EDD+V+V++KPA +VVHP GN TGTL
Sbjct: 64 KRKVRPGDIYEISMPEPEDPTPQGEDIPLDVLFEDDDVIVISKPAGLVVHPGAGNWTGTL 123
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHC + S I G RPGIVHRLDK T+G++VV
Sbjct: 124 VNALIHHCG----------------------DSLSGIGGVR-RPGIVHRLDKDTTGVMVV 160
Query: 229 AK 230
AK
Sbjct: 161 AK 162
>gi|110803816|ref|YP_699133.1| pseudouridine synthase [Clostridium perfringens SM101]
gi|110684317|gb|ABG87687.1| pseudouridine synthase, RluA family [Clostridium perfringens SM101]
Length = 306
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R D +++ +IDG+SR +Q G + ING+ K + + GD V I E + L+
Sbjct: 17 IRADKFLALKIDGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKV 75
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAEDIPL+I+YED++V+VVNKP MVVHPAPGN TGTLVN +L+HC
Sbjct: 76 EAEDIPLNIIYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLYHC-------------- 121
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 122 ------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAK 151
>gi|389573333|ref|ZP_10163408.1| pseudouridylate synthase [Bacillus sp. M 2-6]
gi|388427030|gb|EIL84840.1| pseudouridylate synthase [Bacillus sp. M 2-6]
Length = 304
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 100/159 (62%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S+ SR +VQ ++ GL+ +NG+ V K ++ V+ GD + I + + L E
Sbjct: 16 RLDKFLSTTEPEWSRTQVQQWVKDGLIEVNGKQV-KANYKVQAGDQIKVEIPDPEALDVE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE + LDI YED++VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 75 AESMDLDIYYEDEDVLVVNKPRGMVVHPAPGHVTGTLVNGLMAHCN-------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 --DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|428318071|ref|YP_007115953.1| ribosomal large subunit pseudouridine synthase D [Oscillatoria
nigro-viridis PCC 7112]
gi|428241751|gb|AFZ07537.1| ribosomal large subunit pseudouridine synthase D [Oscillatoria
nigro-viridis PCC 7112]
Length = 321
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 96/159 (60%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD W+S++I +SR+R+Q+ I G V +N + + +VK GD ++ T+ E QP +
Sbjct: 27 RLDIWLSNQIPDLSRSRIQTLISQGNVKVNDETCTSKKISVKTGDRIHLTLPETQPTSLQ 86
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IPLDI+YEDD+++++NKPA +VVHPA G+A GTLVN +L HC L
Sbjct: 87 PEAIPLDILYEDDSLIIINKPAGLVVHPAAGHADGTLVNALLAHCPL------------- 133
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ I G RPGIVHRLDK T+G + +AK
Sbjct: 134 -----------AEIGGVQ-RPGIVHRLDKDTTGAIAIAK 160
>gi|86358939|ref|YP_470831.1| pseudouridylate synthase, ribosomal large subunit D protein
[Rhizobium etli CFN 42]
gi|86283041|gb|ABC92104.1| pseudouridylate synthase, ribosomal large subunit D protein
[Rhizobium etli CFN 42]
Length = 354
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 115/201 (57%), Gaps = 32/201 (15%)
Query: 31 VFKILRARCSSSSSGGNNREPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARV 89
V KI R R S +P AG++ T D A + RLDAW+++++ + SR+R+
Sbjct: 4 VLKIRRRRSVLS-------DPFKQAAGIRKVLTADETA-EGRLDAWLTAQVGEDFSRSRI 55
Query: 90 QSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149
++ I+ G VS+ G+ V+ V+ GD T+ E + + EDIPL+I++EDD+++V+
Sbjct: 56 KALIKDGQVSLRGEQVTDPQRKVRVGDSFEITLPEPEDPTPKGEDIPLEILHEDDDLIVI 115
Query: 150 NKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS 209
+KPA +VVHP GN TGTLVN ++HHC + S I G
Sbjct: 116 SKPAGLVVHPGSGNWTGTLVNALIHHCG----------------------DTLSGIGGVR 153
Query: 210 IRPGIVHRLDKGTSGLLVVAK 230
RPGIVHRLDK T+G++VVAK
Sbjct: 154 -RPGIVHRLDKDTTGVMVVAK 173
>gi|227904070|ref|ZP_04021875.1| pseudouridine synthase [Lactobacillus acidophilus ATCC 4796]
gi|227868089|gb|EEJ75510.1| pseudouridine synthase [Lactobacillus acidophilus ATCC 4796]
Length = 305
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 98/159 (61%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +IS ++ +SR RV+ I+ + +N + V KVS+ ++ GD + T+ ++PL
Sbjct: 18 RLDKFISEQLSDLSRTRVKELIQDQNILVN-EKVEKVSYKIQDGDKIEITVPAVKPLDIV 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 77 AENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT--------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ + S G RPGIVHR+DK TSGLL++AK
Sbjct: 122 -------QDLAQSPEG--FRPGIVHRIDKDTSGLLMIAK 151
>gi|452992514|emb|CCQ96045.1| pseudouridylate synthase [Clostridium ultunense Esp]
Length = 305
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 26/171 (15%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
LE V+ G+ RLD++++ R++ +SR+ +Q I+ GLV +NG SK + VK GD +
Sbjct: 4 LEFYVEDTEGE-RLDSYLAFRLNNVSRSYLQKLIKEGLVLVNGNG-SKARYRVKIGDYIQ 61
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E + E++PLDI+YED ++++VNKP MVVHPAPGN TGTLVN +L+H
Sbjct: 62 IKLPEQEQEEPIPENLPLDIIYEDKDIVIVNKPEDMVVHPAPGNPTGTLVNALLYHV--- 118
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ +DI IRPGIVHRLDK TSGLL VAK
Sbjct: 119 -------DSLYSGKDI--------------IRPGIVHRLDKDTSGLLAVAK 148
>gi|403383409|ref|ZP_10925466.1| RNA pseudouridine synthase ylyB [Kurthia sp. JC30]
Length = 306
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V T+ R+D +++ D SR +V+ I G + +NG+ V KV + V+ GD +
Sbjct: 8 VTTEIAGERIDKALAAMQDTWSRTQVKGLIEDGHLLVNGETV-KVKYKVQDGDRIEVNAP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ +PL AED+ L+IVYED++VLVVNKP MVVHPAPG+A+GTLVNG++HHC+
Sbjct: 67 DPEPLEILAEDLNLEIVYEDEDVLVVNKPKGMVVHPAPGHASGTLVNGLMHHCT------ 120
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ----------DL-------SGINGI-MRPGIVHRIDKDTSGLLMVAK 149
>gi|402836105|ref|ZP_10884655.1| pseudouridine synthase, RluA family [Mogibacterium sp. CM50]
gi|402272117|gb|EJU21340.1| pseudouridine synthase, RluA family [Mogibacterium sp. CM50]
Length = 351
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 102/163 (62%), Gaps = 26/163 (15%)
Query: 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQP 127
AGK RLD++I D +SR+ Q+ I G VS++G+ V+K + VK G+ + I E +
Sbjct: 61 AGK-RLDSYIGEATD-LSRSYAQNLIEDGQVSVSGRQVAK-KYKVKAGESITINIPEAKS 117
Query: 128 LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQE 187
+ A E+IP+DIVYEDD+V+VV KP MVVHPA GN GTLVN I++HC
Sbjct: 118 IDAAPENIPIDIVYEDDDVIVVEKPRGMVVHPAAGNPDGTLVNAIMYHCG---------- 167
Query: 188 AFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+GA IRPGIVHR+DK TSGLL++AK
Sbjct: 168 ------------DSLSSINGA-IRPGIVHRIDKDTSGLLMIAK 197
>gi|58337436|ref|YP_194021.1| pseudouridine synthase [Lactobacillus acidophilus NCFM]
gi|58254753|gb|AAV42990.1| pseudouridine synthase [Lactobacillus acidophilus NCFM]
Length = 302
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 98/159 (61%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +IS ++ +SR RV+ I+ + +N + V KVS+ ++ GD + T+ ++PL
Sbjct: 15 RLDKFISEQLSDLSRTRVKELIQDQNILVN-EKVEKVSYKIQDGDKIEITVPAVKPLDIV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 74 AENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT--------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ + S G RPGIVHR+DK TSGLL++AK
Sbjct: 119 -------QDLAQSPEG--FRPGIVHRIDKDTSGLLMIAK 148
>gi|434402867|ref|YP_007145752.1| ribosomal large subunit pseudouridine synthase D [Cylindrospermum
stagnale PCC 7417]
gi|428257122|gb|AFZ23072.1| ribosomal large subunit pseudouridine synthase D [Cylindrospermum
stagnale PCC 7417]
Length = 321
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S + ISR+R+Q I G V +N +V + + GD + I E++PL+ +
Sbjct: 22 RLDRYLSQELSDISRSRIQQLIEQGNVQLNDKVCTSKKITLVRGDRITLEIPEVKPLQLQ 81
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
AEDIPLDI+YEDD ++++NKPA +VVHPAPG+ GTLVN +L HC +LP +
Sbjct: 82 AEDIPLDILYEDDQLIILNKPAGLVVHPAPGHPDGTLVNALLAHCPNLPGI--------- 132
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 133 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 156
>gi|138894673|ref|YP_001125126.1| ribosomal large subunit pseudouridine synthase D-like protein
[Geobacillus thermodenitrificans NG80-2]
gi|196247711|ref|ZP_03146413.1| pseudouridine synthase, RluA family [Geobacillus sp. G11MC16]
gi|134266186|gb|ABO66381.1| ribosomal large subunit pseudouridine synthase D-like protein
[Geobacillus thermodenitrificans NG80-2]
gi|196212495|gb|EDY07252.1| pseudouridine synthase, RluA family [Geobacillus sp. G11MC16]
Length = 304
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 105/172 (61%), Gaps = 29/172 (16%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+EE D + R+D I++ D SR++VQ I++GLV++NG+ V K ++ + GD V
Sbjct: 7 HIEEEYDGE----RIDKVIAALNDEWSRSQVQQWIKNGLVTVNGRTV-KANYKSELGDTV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E +PL E E IPLDI YED++VLVVNKP MVVHPAPG+ GTLVN +L HC
Sbjct: 62 AISPPEPEPLHVEPEPIPLDIYYEDEDVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCR- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|168215478|ref|ZP_02641103.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
gi|182382386|gb|EDT79865.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
Length = 306
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R D +++ +I+G+SR +Q G + ING+ K + + GD V I E + L+
Sbjct: 17 IRADKFLALKIEGVSRNFIQGLFDDGKILINGKA-EKGKYKLSVGDCVEVEIPEPEELKV 75
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAEDIPL+IVYED++V+VVNKP MVVHPAPGN TGTLVN +L+HC
Sbjct: 76 EAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLYHC-------------- 121
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 122 ------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAK 151
>gi|147678153|ref|YP_001212368.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
gi|146274250|dbj|BAF59999.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
Length = 312
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 26/166 (15%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
+ AGK RLD +++ ++G++R VQ I G+ S+NGQ + S+ VK GD+V + E
Sbjct: 11 EEDAGK-RLDLFLAGEMEGLTRTYVQKLIAEGMASVNGQR-GRASYRVKPGDVVVLQVPE 68
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
+ L + E IPL++ YED +V+V+NKP MVVHPA GN +GTLVN +L+HCS
Sbjct: 69 PEGLEIKKEPIPLEVYYEDADVIVINKPRGMVVHPADGNYSGTLVNALLYHCS------- 121
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHRLDK TSGL++VAK
Sbjct: 122 ---------DL-------SGINGV-MRPGIVHRLDKDTSGLIMVAK 150
>gi|428208374|ref|YP_007092727.1| ribosomal large subunit pseudouridine synthase D [Chroococcidiopsis
thermalis PCC 7203]
gi|428010295|gb|AFY88858.1| ribosomal large subunit pseudouridine synthase D [Chroococcidiopsis
thermalis PCC 7203]
Length = 311
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 94/160 (58%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ ++ +SR+R+Q I G V IN V + VK GD + I +QPL +
Sbjct: 14 RLDRYLAQQLTQLSRSRLQQLIEQGCVQINDSVCTAKKTEVKTGDRIRIEIPAVQPLELK 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
E IPLDI+YEDD++L++NKPA +VVHPAPG+A GTLVN +L HC +LP +
Sbjct: 74 PEAIPLDILYEDDSLLIINKPAGLVVHPAPGHADGTLVNALLAHCPNLPGI--------- 124
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 125 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 148
>gi|431794675|ref|YP_007221580.1| ribosomal large subunit pseudouridine synthase D
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784901|gb|AGA70184.1| ribosomal large subunit pseudouridine synthase D
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 332
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 106/180 (58%), Gaps = 27/180 (15%)
Query: 52 IANYAGVQLEETVDTKAGK-LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110
I N V + ET++ + + RLD ++ + G SR+ VQ I G V +NG V K ++
Sbjct: 22 IENSETVGVGETLELELQEGTRLDVGLTEVV-GKSRSTVQGLIGDGHVLVNG-TVKKSNY 79
Query: 111 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170
V+ GD + I Q L+ +AE+IPLDIVYED+++LVVNKP MVVHPAPG TGTLVN
Sbjct: 80 KVRSGDKITVVIPPPQELKVDAENIPLDIVYEDEDLLVVNKPQGMVVHPAPGAWTGTLVN 139
Query: 171 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+LHHC S I+G +RPGIVHR+DK TSGLLVVAK
Sbjct: 140 ALLHHCR-----------------------NLSGINGV-LRPGIVHRIDKDTSGLLVVAK 175
>gi|258515575|ref|YP_003191797.1| RluA family pseudouridine synthase [Desulfotomaculum acetoxidans
DSM 771]
gi|257779280|gb|ACV63174.1| pseudouridine synthase, RluA family [Desulfotomaculum acetoxidans
DSM 771]
Length = 305
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 100/159 (62%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S+ ISR+++Q I GLV ING+ V+ + +K GD +N TI + + E
Sbjct: 15 RLDVYLSNCYPDISRSQLQRLIAQGLVEINGKKVA-AKYKIKPGDYINLTIPDPVGVSVE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+I LDI +ED++V+V+NKP MVVHPA GN TGT+VN +L+HC
Sbjct: 74 AENIALDIYFEDEDVIVINKPRGMVVHPAEGNYTGTMVNALLYHC--------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHRLDK TSGLL+VAK
Sbjct: 119 -RDL-------SGINGV-LRPGIVHRLDKDTSGLLMVAK 148
>gi|427737025|ref|YP_007056569.1| ribosomal large subunit pseudouridine synthase D [Rivularia sp. PCC
7116]
gi|427372066|gb|AFY56022.1| ribosomal large subunit pseudouridine synthase D [Rivularia sp. PCC
7116]
Length = 309
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD+++S + +SR+R+Q I G V +NG++ + +++K GD++ I QPL +
Sbjct: 17 RLDSYLSGKKLDLSRSRIQQLIEQGHVKLNGEICNSKKNSLKQGDLIVLEIPTAQPLELQ 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
E+IPLDI+YED+ +L++NKPA +VVHPAPG+ GTLVN +L HC +LP +
Sbjct: 77 PENIPLDILYEDEQILILNKPAGLVVHPAPGHPNGTLVNAVLAHCPNLPGI--------- 127
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 128 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 151
>gi|440227628|ref|YP_007334719.1| ribosomal large subunit pseudouridine synthase D [Rhizobium tropici
CIAT 899]
gi|440039139|gb|AGB72173.1| ribosomal large subunit pseudouridine synthase D [Rhizobium tropici
CIAT 899]
Length = 341
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD+W+++ I + SR+RVQ I+ G V++ G V+ V+ GD+ T+ E +
Sbjct: 24 RLDSWLTAEIGEEFSRSRVQGLIKEGAVTLEGAAVTDAKRKVRPGDVYEITLPEPEDPTP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPLD++YEDD+V+V++KPA +VVHP GN +GTLVN ++HHC
Sbjct: 84 QGEDIPLDVLYEDDDVIVISKPAGLVVHPGAGNWSGTLVNALIHHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK T+G++VVAK
Sbjct: 131 ----------NSLSGIGGVRRPGIVHRLDKDTTGVMVVAK 160
>gi|343084378|ref|YP_004773673.1| RluA family pseudouridine synthase [Cyclobacterium marinum DSM 745]
gi|342352912|gb|AEL25442.1| pseudouridine synthase, RluA family [Cyclobacterium marinum DSM
745]
Length = 344
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 104/172 (60%), Gaps = 27/172 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E TVD +R+D +I+ ++ +R +VQ SI SG+V +NG+VV K ++ +K GD++
Sbjct: 20 ELTVDPGQSSIRIDKFITDKLAYATRNKVQQSITSGIVQVNGEVV-KANYKIKAGDLITF 78
Query: 121 TISE-LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SL 178
+ + + AED+PLDI YEDD+++VV KPA MVVHPA GN TGTLVN + ++ +L
Sbjct: 79 AMEKSRKETEVVAEDLPLDIRYEDDHLMVVYKPAGMVVHPAHGNWTGTLVNALAYYFKNL 138
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
P L G S RPG+VHR+DK TSGLLV+AK
Sbjct: 139 PELP------------------------GNSGRPGLVHRIDKDTSGLLVIAK 166
>gi|385809060|ref|YP_005845456.1| ribosomal large subunit pseudouridine synthase D [Ignavibacterium
album JCM 16511]
gi|383801108|gb|AFH48188.1| Ribosomal large subunit pseudouridine synthase D [Ignavibacterium
album JCM 16511]
Length = 326
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 105/169 (62%), Gaps = 32/169 (18%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL--QP 127
K RLD ++ ++I+ +R+++Q SI +GLV++NG +K +++VK GD++ I + +P
Sbjct: 20 KERLDTFLVNQIENATRSKIQKSIEAGLVTVNGNP-AKANYSVKPGDVI-IAIQPISPRP 77
Query: 128 LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQE 187
E E+IPLDIVYEDD ++VVNKPA MV HPA N TGTLVN +LHH
Sbjct: 78 EDVEPEEIPLDIVYEDDYLMVVNKPAGMVAHPAYANYTGTLVNALLHH------------ 125
Query: 188 AFSDAEDISDDEEFSSSISGASI--RPGIVHRLDKGTSGLLVVAKVIFS 234
+ S+SG + RPGIVHR+DK TSGLLVVAK F+
Sbjct: 126 --------------TKSLSGLNDAGRPGIVHRIDKDTSGLLVVAKDDFT 160
>gi|257439832|ref|ZP_05615587.1| ribosomal large subunit pseudouridine synthase D [Faecalibacterium
prausnitzii A2-165]
gi|257197741|gb|EEU96025.1| pseudouridine synthase, RluA family [Faecalibacterium prausnitzii
A2-165]
Length = 314
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E V+ + R+D ++S G+SR+ +Q + G V NG+ +K S +K GD++
Sbjct: 3 QREYIVEAEGAGQRIDRFLSGEDTGLSRSALQGLVAEGHVLCNGKAPAK-SLKLKAGDII 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I + +P+ A ++IPLDI+YED ++LVVNKP MVVHPAPGN GTLVN +L HC
Sbjct: 62 LLEIPDAKPIEAVPQEIPLDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S S G IRPGIVHR+DK TSGLLVVAK
Sbjct: 120 ---------------------KGSLSGIGGEIRPGIVHRVDKDTSGLLVVAK 150
>gi|440681498|ref|YP_007156293.1| ribosomal large subunit pseudouridine synthase D [Anabaena
cylindrica PCC 7122]
gi|428678617|gb|AFZ57383.1| ribosomal large subunit pseudouridine synthase D [Anabaena
cylindrica PCC 7122]
Length = 306
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S + +SR+RVQ I G V +N ++ + ++ GD ++ I QPL+
Sbjct: 14 RLDRYLSEELPDVSRSRVQQLIEQGHVQVNNKICTSKKIHLNAGDRISLEIPAAQPLKLV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
AEDIPLDI+YEDD +L++NKPA +VVHPAPG+ GTLVN +L HC +LP +
Sbjct: 74 AEDIPLDILYEDDQLLILNKPAGLVVHPAPGHPDGTLVNALLAHCPNLPGI--------- 124
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 125 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 148
>gi|315038468|ref|YP_004032036.1| pseudouridine synthase [Lactobacillus amylovorus GRL 1112]
gi|325956884|ref|YP_004292296.1| pseudouridine synthase [Lactobacillus acidophilus 30SC]
gi|385817725|ref|YP_005854115.1| pseudouridine synthase [Lactobacillus amylovorus GRL1118]
gi|312276601|gb|ADQ59241.1| pseudouridine synthase [Lactobacillus amylovorus GRL 1112]
gi|325333449|gb|ADZ07357.1| pseudouridine synthase [Lactobacillus acidophilus 30SC]
gi|327183663|gb|AEA32110.1| pseudouridine synthase [Lactobacillus amylovorus GRL1118]
Length = 302
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 96/159 (60%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S +I +SR RV+ I+ + +N Q KVS+ V+ GD + + ++PL
Sbjct: 15 RLDKFVSEQIPDLSRTRVKELIQDDNILVN-QKKEKVSYKVQAGDQIEVNVPAVKPLDVV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPLDIVYEDD+V+VVNKP MVVHPAPG++ TLVN +L+H LA S E F
Sbjct: 74 PEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHSDHTLVNALLYHTK--DLAKS-PEGF-- 128
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHR+DK TSGLL++AK
Sbjct: 129 -------------------RPGIVHRIDKDTSGLLMIAK 148
>gi|334133945|ref|ZP_08507480.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF7]
gi|333608453|gb|EGL19750.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF7]
Length = 321
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ + R+D +S +DG+SR ++Q IR G ++G+ V K ++ + G +V+ I
Sbjct: 26 VEAEQNGERIDKLLSDALDGVSRTQIQQWIRDGHARVDGRNV-KPNYKLSEGQVVDLAIP 84
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ +PL AE+IPLD+VYED +V+V+NKP +VVHPAPG+ +GTLVN ++HHC
Sbjct: 85 DPEPLDIAAENIPLDVVYEDGDVIVINKPRGLVVHPAPGHYSGTLVNALMHHC------- 137
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 138 ---------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMIAK 167
>gi|218675156|ref|ZP_03524825.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli GR56]
Length = 199
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLDAW+++++ + SR+R+++ I+ G VS+ G+ V+ V+ GD T+ E +
Sbjct: 16 RLDAWLTAQVGEDFSRSRIKALIKDGQVSMRGEPVTDPQRKVRVGDSFEITLPEPEDPTP 75
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EDIPLDI+YEDD+++V++KPA +VVHPA GN TGTLVN ++HHC TL
Sbjct: 76 RGEDIPLDILYEDDDLIVISKPAGLVVHPASGNWTGTLVNALIHHCGA-TL--------- 125
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I G RPGIVHRLDK T+G++VVAK
Sbjct: 126 ------------SGIGGVR-RPGIVHRLDKDTTGVMVVAK 152
>gi|354558711|ref|ZP_08977965.1| pseudouridine synthase, RluA family [Desulfitobacterium
metallireducens DSM 15288]
gi|353545773|gb|EHC15223.1| pseudouridine synthase, RluA family [Desulfitobacterium
metallireducens DSM 15288]
Length = 329
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 98/160 (61%), Gaps = 26/160 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD + I G +R+ VQ+ I GLV +NG+V K ++ ++ GD V I + L
Sbjct: 40 VRLDVGATEAI-GKTRSYVQTLISEGLVEVNGEV-KKANYKIRQGDKVKVVIPPPKELSV 97
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAE+IPLDIVYED++VLVVNK MVVHPAPG+ TGTLVN +L+HC
Sbjct: 98 EAENIPLDIVYEDEDVLVVNKAQGMVVHPAPGSWTGTLVNALLYHCL------------- 144
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G +RPGIVHR+DK TSGLLVVAK
Sbjct: 145 ----------NLSGINGV-LRPGIVHRIDKDTSGLLVVAK 173
>gi|374333001|ref|YP_005083185.1| RluA family pseudouridine synthase [Pseudovibrio sp. FO-BEG1]
gi|359345788|gb|AEV39162.1| pseudouridine synthase, RluA family [Pseudovibrio sp. FO-BEG1]
Length = 349
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 95/161 (59%), Gaps = 27/161 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLDA +++ ID SR R+Q+ IR+G V I + V + + V GD + + E + +
Sbjct: 36 RLDAVLAAHIDDFSRNRLQALIRAGQVQIGQRTVLEPKYRVCAGDTITLIVPEPEAAEPQ 95
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPL IVYED++++V++KPA +VVHP GN TGTLVN ++HHC
Sbjct: 96 PEDIPLTIVYEDEDLIVIDKPAGLVVHPGAGNPTGTLVNALIHHC--------------- 140
Query: 192 AEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVVAK 230
SS+S G RPGIVHR+DK T+GLLVVAK
Sbjct: 141 ----------GSSLSGIGGVKRPGIVHRIDKDTTGLLVVAK 171
>gi|429727610|ref|ZP_19262374.1| pseudouridine synthase, RluA family [Peptostreptococcus anaerobius
VPI 4330]
gi|429151914|gb|EKX94755.1| pseudouridine synthase, RluA family [Peptostreptococcus anaerobius
VPI 4330]
Length = 320
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +I+S+ ISR+ +Q I+ + +N ++ K S+ VK GD + + E Q L E
Sbjct: 32 RLDFYIASQYRDISRSYIQKLIKEDRIRVNSKI-EKASYKVKTGDKIEVNMPEPQALEIE 90
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DI +DIVYEDD ++VVNK MVVHPAPGN TLVN +L HC
Sbjct: 91 PQDIGIDIVYEDDYLMVVNKQQGMVVHPAPGNPDRTLVNAVLFHCG-------------- 136
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G IRPGIVHR+DK TSGLLV+AK
Sbjct: 137 --------DRLSSINGV-IRPGIVHRIDKNTSGLLVIAK 166
>gi|332981610|ref|YP_004463051.1| ribosomal large subunit pseudouridine synthase D [Mahella
australiensis 50-1 BON]
gi|332699288|gb|AEE96229.1| ribosomal large subunit pseudouridine synthase D [Mahella
australiensis 50-1 BON]
Length = 304
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 103/159 (64%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +R+ +Q+ I++G +++NGQ + K + +K GD++ + EL+P+ +
Sbjct: 16 RLDTFLAESFEQWTRSHIQNLIKNGNITVNGQHI-KSGYKLKDGDIIKVEVPELRPIDIQ 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPL+I+YED++++V+NKP MVVHPA GN + TLVN +L HC
Sbjct: 75 PEDIPLNILYEDEDIIVINKPQGMVVHPAAGNYSATLVNALLAHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 120 -KDL-------SGING-EIRPGIVHRIDKDTSGVLVVAK 149
>gi|157692226|ref|YP_001486688.1| pseudouridylate synthase [Bacillus pumilus SAFR-032]
gi|157680984|gb|ABV62128.1| pseudouridylate synthase [Bacillus pumilus SAFR-032]
Length = 304
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 99/159 (62%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S+ SR +VQ ++ GL+ +NG+ V K ++ V+ GD + I E + L E
Sbjct: 16 RLDKFLSTSEPEWSRTQVQQWVKDGLIEVNGKQV-KANYKVQAGDQIKVEIPEPEALDVE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE + LDI YED +VLVVNKP MVVHPAPG+ +GTLVNG++ HC+
Sbjct: 75 AEAMDLDIYYEDADVLVVNKPRGMVVHPAPGHVSGTLVNGLMAHCT-------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 --DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|443311463|ref|ZP_21041091.1| pseudouridine synthase, RluA family [Synechocystis sp. PCC 7509]
gi|442778501|gb|ELR88766.1| pseudouridine synthase, RluA family [Synechocystis sp. PCC 7509]
Length = 314
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 97/164 (59%), Gaps = 26/164 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+R+Q I G V +NG++ V+ GD + I ++QPL +
Sbjct: 14 RLDLYLAQNLSDLSRSRLQQLIAEGNVQVNGKICLSKKATVQKGDHILIQIPDVQPLDLK 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
AE+IPLDI+YEDD +L+VNKPA +VVHPAPG+ GTLVN +L HC +LP +
Sbjct: 74 AENIPLDILYEDDALLIVNKPAGLVVHPAPGHPDGTLVNALLAHCPNLPGI--------- 124
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
G RPGIVHRLDK T+G + +AK F+
Sbjct: 125 ----------------GGVQRPGIVHRLDKDTTGAIAIAKTDFA 152
>gi|289422301|ref|ZP_06424151.1| ribosomal large subunit pseudouridine synthase D
[Peptostreptococcus anaerobius 653-L]
gi|289157246|gb|EFD05861.1| ribosomal large subunit pseudouridine synthase D
[Peptostreptococcus anaerobius 653-L]
Length = 320
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +I+S+ ISR+ +Q I+ + +N ++ K S+ VK GD + + E Q L E
Sbjct: 32 RLDFYIASQYRDISRSYIQKLIKEDRIRVNSKI-EKASYKVKTGDKIEVNMPEPQALEIE 90
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DI +DIVYEDD ++VVNK MVVHPAPGN TLVN +L HC
Sbjct: 91 PQDIGIDIVYEDDYLMVVNKQQGMVVHPAPGNPDRTLVNAVLFHCG-------------- 136
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G IRPGIVHR+DK TSGLLV+AK
Sbjct: 137 --------DRLSSINGV-IRPGIVHRIDKNTSGLLVIAK 166
>gi|420245965|ref|ZP_14749488.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
gi|398044520|gb|EJL37336.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
Length = 340
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLDAW++S +DG SR R+++ I G V +NG+V+++ + GD V + E +
Sbjct: 24 RLDAWLTSVLDGEFSRNRIKALIEQGAVRLNGKVITEPKKKITAGDAVEIDLPEPEDPEP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPL+++YEDD+++V+ KPA +VVHP GN TGTLVN +++HC
Sbjct: 84 KGEDIPLEVLYEDDDLIVIAKPAGLVVHPGAGNWTGTLVNALIYHCGA------------ 131
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK TSG++V AK
Sbjct: 132 -----------SLSGIGGVKRPGIVHRLDKDTSGVMVAAK 160
>gi|225181681|ref|ZP_03735121.1| pseudouridine synthase, RluA family [Dethiobacter alkaliphilus AHT
1]
gi|225167662|gb|EEG76473.1| pseudouridine synthase, RluA family [Dethiobacter alkaliphilus AHT
1]
Length = 312
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 98/168 (58%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TVD RLD +S ++ ++RARVQ I V ++G+ K ++ ++ G+ V T+
Sbjct: 7 TVDEVLAGERLDVAVSRHVEELTRARVQKLIAEDYVQVDGKP-QKANYRLRAGETVEVTV 65
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E++P AE I LDI+YED +VLV+NKP +V+HPA G+A GTLVN +LHHC
Sbjct: 66 PEVKPAEIAAEKIDLDILYEDQDVLVLNKPKGLVIHPAAGHAGGTLVNALLHHC------ 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+S G RPGIVHRLDK TSG++VVAK
Sbjct: 120 ----------DDLSG--------IGGEARPGIVHRLDKDTSGVMVVAK 149
>gi|150390556|ref|YP_001320605.1| RluA family pseudouridine synthase [Alkaliphilus metalliredigens
QYMF]
gi|149950418|gb|ABR48946.1| pseudouridine synthase, RluA family [Alkaliphilus metalliredigens
QYMF]
Length = 310
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 99/160 (61%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD +I+ + D +SR+ +Q I+ V+++G+ K + VK G ++ ++ E + L
Sbjct: 15 VRLDIYIAEQYDDLSRSYIQKVIKDNGVTVDGRP-EKNRYIVKVGQVIVVSLPEAKELEV 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
A++IPLDIVYEDD++LVVNKP MVVHPAPGN T+VN +L+HC
Sbjct: 74 TAQNIPLDIVYEDDDLLVVNKPQDMVVHPAPGNYENTMVNALLYHCKGKL---------- 123
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 124 ------------SSINGI-IRPGIVHRIDKDTSGLLMVAK 150
>gi|86608591|ref|YP_477353.1| RluA family pseudouridine synthase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557133|gb|ABD02090.1| pseudouridine synthase, RluA family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 317
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 95/167 (56%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V K LRLD ++ ++ +SR+R+Q IR G V +NGQ ++ GD V I
Sbjct: 16 VTEKQQGLRLDRGLAEQLPELSRSRLQQLIRQGQVWLNGQPCRDKDRPLQAGDEVEVRIP 75
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
P + E IPLDI+YEDD++LV+NKP +VVHPAPG+A+GTLV+ +L HC P L+
Sbjct: 76 PATPTALQPEPIPLDILYEDDDLLVINKPRGLVVHPAPGHASGTLVHALLAHC--PRLSG 133
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
N E RPGIVHRLDK T+G LV+AK
Sbjct: 134 INGEQ----------------------RPGIVHRLDKDTTGALVIAK 158
>gi|399043350|ref|ZP_10737704.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
gi|398058188|gb|EJL50096.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
Length = 341
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 110/182 (60%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P +G++ T D A + RLDAW+++++ + SR+RV++ I+ G VS+ G+V++
Sbjct: 3 DPFKQASGIRKVLTADENA-EGRLDAWMTAQLGEEFSRSRVKALIKEGQVSVAGKVLADP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD+ + E + E+IPLDI+YEDD+++V++KPA +VVHPA GN TGTL
Sbjct: 62 QKKVRPGDIFEIVLPEPEDPTPRGENIPLDILYEDDDLIVISKPAGLVVHPAAGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN +++HC + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIYHCG----------------------DSLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|428774431|ref|YP_007166219.1| ribosomal large subunit pseudouridine synthase D [Cyanobacterium
stanieri PCC 7202]
gi|428688710|gb|AFZ48570.1| ribosomal large subunit pseudouridine synthase D [Cyanobacterium
stanieri PCC 7202]
Length = 315
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 97/163 (59%), Gaps = 24/163 (14%)
Query: 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQP 127
A K+R+D W++ + +SR+RVQ I G V +N ++ ++ +K GD ++ I P
Sbjct: 18 ANKIRIDLWLAENLTDLSRSRVQKLIEDGQVYLNDRLCTQKKETLKQGDKIHVHIPAAVP 77
Query: 128 LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQE 187
EA++IPLDI+YED+ ++++NKPA+ VVHPAPG++ GTLVN +L HC P L
Sbjct: 78 SHIEAQEIPLDILYEDEFLIIINKPANFVVHPAPGHSKGTLVNALLAHC--PDL------ 129
Query: 188 AFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I G RPGIVHRLDK T+G +VVAK
Sbjct: 130 ---------------KGIGGVE-RPGIVHRLDKDTTGAMVVAK 156
>gi|194015066|ref|ZP_03053683.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus pumilus ATCC 7061]
gi|194014092|gb|EDW23657.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus pumilus ATCC 7061]
Length = 304
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 99/159 (62%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S+ SR +VQ ++ GL+ +NG+ V K ++ V+ GD + I E + L E
Sbjct: 16 RLDKFLSTTEPEWSRTQVQQWVKDGLIEVNGKQV-KANYKVQAGDQIKVEIPEPEVLDVE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE + LDI YED +VLVVNKP MVVHPAPG+ +GTLVNG++ HC+
Sbjct: 75 AEPMDLDIYYEDADVLVVNKPRGMVVHPAPGHVSGTLVNGLMAHCT-------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 --DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|424883104|ref|ZP_18306736.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392519467|gb|EIW44199.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 341
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLDAW+++++ + SR+R+++ I+ G V + G+ V+
Sbjct: 3 DPFKQAAGNRKVLTADESA-EGRLDAWLTAQVGEEFSRSRIKALIKDGQVFLRGEPVTDP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD T+ E + + EDIPLDI++EDD+V+V++KP+ +VVHP GN TGTL
Sbjct: 62 QRKVRTGDSFELTLPEPEDPTPQGEDIPLDILHEDDDVIVISKPSGLVVHPGAGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHCS + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIHHCS----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|254473085|ref|ZP_05086483.1| ribosomal large subunit pseudouridine synthase D [Pseudovibrio sp.
JE062]
gi|211957806|gb|EEA93008.1| ribosomal large subunit pseudouridine synthase D [Pseudovibrio sp.
JE062]
Length = 349
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 95/161 (59%), Gaps = 27/161 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLDA +++ ID SR R+Q+ IR+G V I + V + + V GD + + E + +
Sbjct: 36 RLDAVLAAHIDDFSRNRLQALIRAGQVQIGQRTVLEPKYRVCAGDTITLIVPEPEAAEPQ 95
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPL IVYED++++V++KPA +VVHP GN TGTLVN ++HHC
Sbjct: 96 PEDIPLTIVYEDEDLIVIDKPAGLVVHPGAGNPTGTLVNALIHHC--------------- 140
Query: 192 AEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVVAK 230
SS+S G RPGIVHR+DK T+GLLV+AK
Sbjct: 141 ----------GSSLSGIGGVKRPGIVHRIDKDTTGLLVIAK 171
>gi|424872040|ref|ZP_18295702.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393167741|gb|EJC67788.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 341
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLDAW+++++ + SR+R+++ I+ G V + G+ V+
Sbjct: 3 DPFKQAAGNRKVLTADETA-EGRLDAWLTAQVGEEFSRSRIKALIKDGQVFLRGEPVTDP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD T+ E + + EDIPLDI++EDD+V+V++KP+ +VVHP GN TGTL
Sbjct: 62 QRKVRTGDSFELTLPEPEDPTPQGEDIPLDILHEDDDVIVISKPSGLVVHPGAGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHCS + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIHHCS----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|407778588|ref|ZP_11125851.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
pacificus pht-3B]
gi|407299665|gb|EKF18794.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
pacificus pht-3B]
Length = 338
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 100/171 (58%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E V T A RLD W+S ++ D +SR+R+Q+ IR+G V+ G V++ H V G+
Sbjct: 9 ELIVGTDAQGTRLDLWLSGQLGDAVSRSRLQALIRAGAVTRAGSPVTEPKHRVAAGEQYA 68
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E +P E++PL+I+ EDD ++VVNKPA +VVHPAPGN +GTLVN +L+HC
Sbjct: 69 LVVPEAEPAEPLPENLPLEILCEDDALIVVNKPAGLVVHPAPGNWSGTLVNALLYHCG-D 127
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
TLA G RPGIVHRLD+ TSG++V AK
Sbjct: 128 TLAG----------------------IGGVRRPGIVHRLDRDTSGVMVAAK 156
>gi|345021939|ref|ZP_08785552.1| hypothetical protein OTW25_11464 [Ornithinibacillus scapharcae
TW25]
Length = 299
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 104/170 (61%), Gaps = 25/170 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
+ V K+RLD ++ SR++VQ I SGLV +NG V++K ++ + GD++
Sbjct: 4 QHVVTDTQNKMRLDKLLAEVNPEQSRSQVQGWITSGLVKVNG-VIAKANYKCQQGDVITW 62
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
+ E++ L + E+IPLDIVYED +V+V+NKP MVVHP+ G+ +GTLVN +L+HC
Sbjct: 63 QLPEVKELEIQPENIPLDIVYEDQDVIVINKPKGMVVHPSAGHQSGTLVNALLYHC---- 118
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G RPGIVHR+DK TSGLLVVAK
Sbjct: 119 ------------KDL-------SGINGVE-RPGIVHRIDKDTSGLLVVAK 148
>gi|116253506|ref|YP_769344.1| ribosomal large subunit pseudouridine synthase D [Rhizobium
leguminosarum bv. viciae 3841]
gi|115258154|emb|CAK09255.1| putative ribosomal large subunit pseudouridine synthase D
[Rhizobium leguminosarum bv. viciae 3841]
Length = 341
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLDAW+++++ + SR+R+++ I+ G V + G+ V+
Sbjct: 3 DPFKQAAGNRKVLTADETA-EGRLDAWLTAQVGEEFSRSRIKALIKDGQVLLRGEPVTDP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD T+ E + + EDIPLDI++EDD+V+V++KP+ +VVHP GN TGTL
Sbjct: 62 QRKVRTGDSFELTLPEPEDPTPQGEDIPLDILHEDDDVIVISKPSGLVVHPGAGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHCS + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIHHCS----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|433772820|ref|YP_007303287.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
gi|433664835|gb|AGB43911.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
Length = 351
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 98/160 (61%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD W+++ + +SR+RVQ IR G V I+G+ V++ ++ G+ V+ + E +P +
Sbjct: 34 RLDQWLAAALGPDMSRSRVQMLIRQGAVVIDGKPVAETKRKMRAGENVSVAMPEPEPAQP 93
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ E+I LD++YEDD ++V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 94 QGENIALDVLYEDDELIVINKPAGLVVHPGAGNWTGTLVNALIHHCG------------- 140
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 141 ---------DSLSGIGGVR-RPGIVHRLDKETSGVMVVAK 170
>gi|86605450|ref|YP_474213.1| RluA family pseudouridine synthase [Synechococcus sp. JA-3-3Ab]
gi|86553992|gb|ABC98950.1| pseudouridine synthase, RluA family [Synechococcus sp. JA-3-3Ab]
Length = 310
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 24/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV K LRLD ++ ++ +SR+R+Q IR G V +NGQ ++ GD + I
Sbjct: 8 TVTEKQQGLRLDRGLAEQLPELSRSRLQQLIRQGQVWLNGQPCLDKDRPLQAGDQIEVRI 67
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
P + E IPLDI+YED+++LV+NKP +VVHPAPG+A+GTLV+ +L HC P L+
Sbjct: 68 PPATPTPLQPERIPLDILYEDEDLLVINKPRGLVVHPAPGHASGTLVHALLAHC--PRLS 125
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
N E RPGIVHRLDK T+G LV+AK
Sbjct: 126 GINGEQ----------------------RPGIVHRLDKDTTGALVIAK 151
>gi|288553139|ref|YP_003425074.1| large ribosomal pseudouridine synthesis protein [Bacillus
pseudofirmus OF4]
gi|288544299|gb|ADC48182.1| large ribosomal pseudouridine synthesis protein [Bacillus
pseudofirmus OF4]
Length = 304
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 102/159 (64%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++++ SR++VQ I+ G V +NG+ +K ++ ++ D V +I E + L
Sbjct: 16 RIDKFLTAQNGEWSRSQVQQWIKDGQVQVNGKA-TKSNYKMQVEDQVTLSIPEPEELDVI 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPLD+VYED +V+VVNKP MVVHPAPG+ TGTLVN +L+HC
Sbjct: 75 AEDIPLDVVYEDADVIVVNKPRGMVVHPAPGHYTGTLVNALLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 -KDL-------SGINGV-IRPGIVHRIDKDTSGLLMVAK 149
>gi|160933118|ref|ZP_02080507.1| hypothetical protein CLOLEP_01961 [Clostridium leptum DSM 753]
gi|156868192|gb|EDO61564.1| pseudouridine synthase, RluA family [Clostridium leptum DSM 753]
Length = 306
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 100/168 (59%), Gaps = 32/168 (19%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKG--GDMVNCTISELQPL 128
+RLD ++ R+ ++R +Q + V ING+ +K N KG GD V I + +PL
Sbjct: 16 IRLDKVLAERLPDLTRTAIQRLLEEEQVLINGKPAAK---NRKGRAGDSVALRIPDPEPL 72
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
+AE++PLDIVYEDD++LVVNKP MVVHPAPGN GTLVN +L HC
Sbjct: 73 CLQAENVPLDIVYEDDDLLVVNKPQGMVVHPAPGNYQGTLVNALLAHC------------ 120
Query: 189 FSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAKVIFS 234
+S+SG + IRPGIVHR+DK TSGLL+VAK F+
Sbjct: 121 -------------GNSLSGINGVIRPGIVHRIDKDTSGLLMVAKNDFA 155
>gi|239832765|ref|ZP_04681094.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
gi|239825032|gb|EEQ96600.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
Length = 402
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 109/196 (55%), Gaps = 24/196 (12%)
Query: 36 RARCSSSSSGGNNREPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIR 94
+ + SSS EP++ E T D+ A RLD W+++ + +SR+RVQS I
Sbjct: 46 KIKRQSSSDDFVKTEPLSTRKTRVKELTTDSDATGKRLDQWLAAALGPDLSRSRVQSLIA 105
Query: 95 SGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAH 154
G V+I+G + ++ G + + E +P AE+IPLDI+YEDD+++V+NKPA
Sbjct: 106 EGHVTIDGVPARETKQKLREGMTIAVVLPEPEPAEPIAENIPLDILYEDDDLIVINKPAG 165
Query: 155 MVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGI 214
+VVHP GN TGTLVN +++HC + S I G RPGI
Sbjct: 166 LVVHPGNGNWTGTLVNALIYHCG----------------------DSLSGIGGIR-RPGI 202
Query: 215 VHRLDKGTSGLLVVAK 230
VHRLDK TSG++VVAK
Sbjct: 203 VHRLDKDTSGVMVVAK 218
>gi|218509234|ref|ZP_03507112.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli Brasil 5]
Length = 274
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 99/160 (61%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLDAW+++++ + SR+R++ I+ G VS+ GQ+++ V+ GD T+ E +
Sbjct: 5 RLDAWLTAQLGEEFSRSRIKVLIKDGQVSMRGQLITDPQRKVRVGDSFEITLPEPEDPTP 64
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EDIPLDI+YEDD+++V++KPA +VVHP GN TGTLVN ++HHC TL
Sbjct: 65 RGEDIPLDILYEDDDLIVISKPAGLVVHPGSGNWTGTLVNALIHHCGA-TL--------- 114
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I G RPGIVHRLDK T+G++VVAK
Sbjct: 115 ------------SGIGGVR-RPGIVHRLDKDTTGVMVVAK 141
>gi|366088576|ref|ZP_09455049.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
acidipiscis KCTC 13900]
Length = 300
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 95/161 (59%), Gaps = 26/161 (16%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K RLD +S+ SR+ ++ + G + +NGQ K + VK GD V E+ L
Sbjct: 10 KGRLDQVLSAAFPEFSRSMIKKLLLDGKILVNGQQ-EKPRYQVKDGDQVTINEPEVHKLD 68
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
A+DIPLDIVYEDD+VLVVNKPA MVVHPAPG+ TLVN +L+HC L
Sbjct: 69 LVAQDIPLDIVYEDDDVLVVNKPAGMVVHPAPGHPDQTLVNALLYHCPL----------- 117
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G ++RPGIVHR+D+ TSGLL+VAK
Sbjct: 118 -------------SKING-TLRPGIVHRIDRDTSGLLMVAK 144
>gi|229019095|ref|ZP_04175930.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1273]
gi|229025339|ref|ZP_04181757.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1272]
gi|423389798|ref|ZP_17367024.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
gi|423418199|ref|ZP_17395288.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
gi|228735924|gb|EEL86501.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1272]
gi|228742195|gb|EEL92360.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1273]
gi|401106472|gb|EJQ14433.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
gi|401641889|gb|EJS59606.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
Length = 302
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V KV++ VKG D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSV-KVNYKVKGNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PDPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040287|gb|ACT57083.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
Length = 340
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D W+++ + + SR+ V+ I +G +SING V + V GD T+ Q L
Sbjct: 24 RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNI 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E+IPLDI+YEDD+++V+NKPA +VVHPAPGN TGTLVN +L+HC
Sbjct: 84 AQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHC-------------- 129
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G RPGIVHRLDK T+G++VVAK
Sbjct: 130 --------HNNLSSINGVK-RPGIVHRLDKDTTGVMVVAK 160
>gi|392989594|ref|YP_006488187.1| 23S rRNA pseudouridine synthase D [Enterococcus hirae ATCC 9790]
gi|392337014|gb|AFM71296.1| 23S rRNA pseudouridine synthase D [Enterococcus hirae ATCC 9790]
Length = 303
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 106/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L T+ T+ G R+D ++ + SR+++Q ++ G VS+NGQVV K ++ VK D +
Sbjct: 3 ELNATIQTETG--RIDKVLTGLFNDYSRSQIQLWLKDGAVSVNGQVV-KANYKVKKNDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E + L EAEDIPL+IVYED+ V VVNKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 VIAVPEPETLSIEAEDIPLEIVYEDEAVAVVNKPQGMVVHPSAGHPNGTMVNALMYHV-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|228940981|ref|ZP_04103539.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228973912|ref|ZP_04134487.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228980501|ref|ZP_04140811.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis Bt407]
gi|384187953|ref|YP_005573849.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410676268|ref|YP_006928639.1| pseudouridine synthase, RluA family [Bacillus thuringiensis Bt407]
gi|423385394|ref|ZP_17362650.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-2]
gi|423528248|ref|ZP_17504693.1| RluA family pseudouridine synthase [Bacillus cereus HuB1-1]
gi|452200334|ref|YP_007480415.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228779321|gb|EEM27578.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis Bt407]
gi|228785778|gb|EEM33782.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228818660|gb|EEM64727.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326941662|gb|AEA17558.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar chinensis CT-43]
gi|401635450|gb|EJS53205.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-2]
gi|402451911|gb|EJV83730.1| RluA family pseudouridine synthase [Bacillus cereus HuB1-1]
gi|409175397|gb|AFV19702.1| pseudouridine synthase, RluA family [Bacillus thuringiensis Bt407]
gi|452105727|gb|AGG02667.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 302
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR++VQ I+ +V++NG+ V KV++ VK D + TI
Sbjct: 8 TVAAEQKNERIDKFVTGINNEWSRSQVQQWIKDDVVTVNGKAV-KVNYKVKEEDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEALDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|196228386|ref|ZP_03127253.1| pseudouridine synthase, RluA family [Chthoniobacter flavus
Ellin428]
gi|196227789|gb|EDY22292.1| pseudouridine synthase, RluA family [Chthoniobacter flavus
Ellin428]
Length = 302
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 105/172 (61%), Gaps = 29/172 (16%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E VD A RLD +++S G+SRAR+Q I+ G V++NG V +K S ++ GD V
Sbjct: 5 EFRVDAAAAGPRLDQFLASAAAGLSRARIQDLIKEGHVTLNGGV-AKASARLRAGDAV-- 61
Query: 121 TISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E P+ E AE+I LD+++EDD+++V+NKPA +VVHPA GN +GT+VN +LHHC
Sbjct: 62 TLHEPPPVPTETVAEEIALDVLFEDDDLIVINKPAGLVVHPAAGNWSGTVVNALLHHCQ- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
TL S I G RPGIVHRLDK TSG LVVAK
Sbjct: 121 -TL---------------------SGIGGEQ-RPGIVHRLDKDTSGCLVVAK 149
>gi|423395807|ref|ZP_17373008.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-1]
gi|423406683|ref|ZP_17383832.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-3]
gi|401653549|gb|EJS71093.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-1]
gi|401659973|gb|EJS77456.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-3]
Length = 302
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 104/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VKG D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKAV-KGNYKVKGNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEALDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|337265946|ref|YP_004610001.1| RluA family pseudouridine synthase [Mesorhizobium opportunistum
WSM2075]
gi|336026256|gb|AEH85907.1| pseudouridine synthase, RluA family [Mesorhizobium opportunistum
WSM2075]
Length = 334
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD W+++ + +SR+RVQ IR G VSING+ V + + G+ V+ + E +P
Sbjct: 17 RLDQWLAASLGPDMSRSRVQMLIRQGAVSINGKPVDETKRKMLPGESVSVAMPEPEPAEP 76
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ E+I LD++YEDD ++V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 77 QGENIALDVLYEDDALIVINKPAGLVVHPGAGNWTGTLVNALIHHCG------------- 123
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 124 ---------DSLSGIGGVR-RPGIVHRLDKETSGVMVVAK 153
>gi|241206033|ref|YP_002977129.1| RluA family pseudouridine synthase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859923|gb|ACS57590.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 341
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLDAW+++++ + SR+R+++ I+ G V + G+ V+
Sbjct: 3 DPFKQAAGNRKVLTADESA-EGRLDAWLTAQVGEEFSRSRIKALIKDGQVFLRGEPVTDP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD T+ E + + EDIPLDI++EDD+V+V++KP+ +VVHP GN TGTL
Sbjct: 62 QRKVRTGDSFELTLPEPEDPTPQGEDIPLDILHEDDDVIVISKPSGLVVHPGAGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHCS TL S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIHHCS-NTL---------------------SGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|336395530|ref|ZP_08576929.1| pseudouridine synthase [Lactobacillus farciminis KCTC 3681]
Length = 304
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 28/169 (16%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E +TK G RLDA+I+ I ++R+++Q I+ +++NGQ V+K + GD +
Sbjct: 12 EYNETKKG--RLDAFINDEISELTRSQIQKFIKDQYITVNGQPVAKSGFKLTNGDKILVN 69
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E +P+ A E+IP+D+VYEDD+VLVVNKP MVVHPA G+ TLVN IL+HC
Sbjct: 70 VPEEEPIEAIPENIPIDVVYEDDDVLVVNKPQGMVVHPAAGHPDKTLVNAILYHCQ---- 125
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+DD+ IRPGIVHR+DK TSGLL++AK
Sbjct: 126 -------------INDDD---------MIRPGIVHRIDKDTSGLLMIAK 152
>gi|398310646|ref|ZP_10514120.1| pseudouridylate synthase [Bacillus mojavensis RO-H-1]
Length = 303
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q + T + R+D +++S +G SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QFDITASEEQKSERIDKFLASTENGWSRTQVQQWVKDGQVVVNGSPV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|251778563|ref|ZP_04821483.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243082878|gb|EES48768.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 302
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 101/160 (63%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D ++S ++G SR+ +Q I + +N +++ K ++ +K D + T+ E++ L+
Sbjct: 15 IRIDKYLSEMLNGKSRSFIQGLIEKESIKVNDKLI-KSNYKLKACDEIVITMPEVETLKV 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E+EDI LDI+YED +V+VVNK MVVHPAPGN GTLVN +L HC+
Sbjct: 74 ESEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTLVNALLFHCT------------- 120
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ SSI+G IRPGIVHR+DK TSG+LV+AK
Sbjct: 121 ---DL-------SSINGV-IRPGIVHRIDKDTSGVLVIAK 149
>gi|229075650|ref|ZP_04208632.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-18]
gi|228707426|gb|EEL59617.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-18]
Length = 302
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V KV++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSV-KVNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|440781918|ref|ZP_20960146.1| RluA family pseudouridine synthase [Clostridium pasteurianum DSM
525]
gi|440220636|gb|ELP59843.1| RluA family pseudouridine synthase [Clostridium pasteurianum DSM
525]
Length = 306
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 103/176 (58%), Gaps = 28/176 (15%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKG 114
Y ++E+ D K RLD ++ + + SR+ +Q I +G V IN + K ++ +K
Sbjct: 3 YFKFRVEDLKDIK----RLDVFLKDKFEDKSRSYIQGIIENGNVKINDDKLKKSNYKLKL 58
Query: 115 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 174
D V I E + L EAEDI + I+YED +V+V++KP MVVHPAPGN TGTLVN +L+
Sbjct: 59 NDEVYVNIPENKELNVEAEDIKIHILYEDGDVIVIDKPQGMVVHPAPGNYTGTLVNALLY 118
Query: 175 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
HC +D+ S I+G + RPGIVHR+DK TSG+LVVAK
Sbjct: 119 HC----------------KDL-------SGINGVN-RPGIVHRIDKDTSGILVVAK 150
>gi|229031524|ref|ZP_04187524.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1271]
gi|228729813|gb|EEL80793.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1271]
Length = 302
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V KV++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKEDVVTVNGKSV-KVNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|85860531|ref|YP_462733.1| ribosomal large subunit pseudouridine synthase D [Syntrophus
aciditrophicus SB]
gi|85723622|gb|ABC78565.1| ribosomal large subunit pseudouridine synthase D [Syntrophus
aciditrophicus SB]
Length = 333
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 96/170 (56%), Gaps = 24/170 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E V LRLD +++S G SRAR+Q I SG V+I+G+ + S ++ GD+V
Sbjct: 9 EYRVTATESGLRLDLFLASHESGFSRARLQRLIESGRVTISGKAAIRASQKLRTGDIVML 68
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
PL +DIPL I+YED ++LV++KPA +VVHPA G+ +GTLVN +L HC
Sbjct: 69 EEPPATPLELIPQDIPLSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHC---- 124
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D I G +RPGIVHRLDK TSGLLVVAK
Sbjct: 125 ---------RDLAGI-----------GGVMRPGIVHRLDKDTSGLLVVAK 154
>gi|397905194|ref|ZP_10506065.1| Ribosomal large subunit pseudouridine synthase D [Caloramator
australicus RC3]
gi|397161843|emb|CCJ33399.1| Ribosomal large subunit pseudouridine synthase D [Caloramator
australicus RC3]
Length = 305
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++S +I+ +SR+R+Q I + +N + + K ++ +K GD + + + L+ +
Sbjct: 17 RIDVFLSEKIEDMSRSRIQKLIEDNKIKVNAKEI-KSNYKIKNGDEITVEVPKPVMLQIQ 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDI +DI+YEDD+++VVNKP MVVHPA GN TGTLVN +L C TL
Sbjct: 76 AEDIDIDILYEDDDIVVVNKPQGMVVHPAAGNYTGTLVNALLKKCR--TL---------- 123
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 124 -----------SSINGV-IRPGIVHRIDKDTSGVLVVAK 150
>gi|226356664|ref|YP_002786404.1| ribosomal large subunit pseudouridine synthase D [Deinococcus
deserti VCD115]
gi|226318654|gb|ACO46650.1| putative ribosomal large subunit pseudouridine synthase D
[Deinococcus deserti VCD115]
Length = 321
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 96/161 (59%), Gaps = 21/161 (13%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLDA +++ + G SR++V + I G V + GQ V+KVS ++GG+ ++ + L R E
Sbjct: 13 RLDAVLAA-LSGASRSQVAAWIAGGHVKVEGQPVTKVSLKLRGGERIDVSPPALPDARVE 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+PLD++YEDD ++ VNKP MV HPAPG +GTLVN +L LP + E
Sbjct: 72 AEDLPLDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPDYDSE---- 127
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
A RPGIVHRLDK TSG++VVAK +
Sbjct: 128 ----------------AGYRPGIVHRLDKDTSGVIVVAKTV 152
>gi|407977667|ref|ZP_11158504.1| pseudouridylate synthase [Bacillus sp. HYC-10]
gi|407415920|gb|EKF37501.1| pseudouridylate synthase [Bacillus sp. HYC-10]
Length = 304
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 100/159 (62%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S+ SR++VQ ++ GL+ +NG+ V K ++ V+ GD + I + + L E
Sbjct: 16 RLDKFLSTTEPEWSRSQVQQWVKDGLIEVNGKHV-KANYKVQAGDQIKVEIPDPEALNVE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE + LDI YED +VLVVNKP MVVHPAPG+ +GTLVNG++ HC+
Sbjct: 75 AESMDLDIYYEDADVLVVNKPRGMVVHPAPGHVSGTLVNGLMAHCN-------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 --DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|118588308|ref|ZP_01545717.1| Prenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine
synthase:Pseudouridine synthase, Rlu:Pseudouridine
[Stappia aggregata IAM 12614]
gi|118439014|gb|EAV45646.1| Prenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine
synthase:Pseudouridine synthase, Rlu:Pseudouridine
[Stappia aggregata IAM 12614]
Length = 341
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 100/168 (59%), Gaps = 23/168 (13%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TVD RLDA +++ ++ +SR R+QS I+SG V++ G + + + V GD + T+
Sbjct: 19 TVDAADAGKRLDAVLATHLEALSRNRIQSLIKSGDVTVGGAKIVEPKYRVNEGDALTLTL 78
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + + EDIP+ +V+ED++++VV+KPA +VVHP GN TGTLVN ++HHC
Sbjct: 79 PQAEDPEPKGEDIPVTVVFEDEHLIVVDKPAGLVVHPGAGNWTGTLVNALIHHCG----- 133
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHR+DK TSGLLVVAK
Sbjct: 134 -----------------DSLSGIGGVK-RPGIVHRIDKDTSGLLVVAK 163
>gi|229104455|ref|ZP_04235123.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-28]
gi|229117388|ref|ZP_04246765.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-3]
gi|407706351|ref|YP_006829936.1| formamidase [Bacillus thuringiensis MC28]
gi|423378255|ref|ZP_17355539.1| RluA family pseudouridine synthase [Bacillus cereus BAG1O-2]
gi|423448398|ref|ZP_17425277.1| RluA family pseudouridine synthase [Bacillus cereus BAG5O-1]
gi|423547190|ref|ZP_17523548.1| RluA family pseudouridine synthase [Bacillus cereus HuB5-5]
gi|423615844|ref|ZP_17591678.1| RluA family pseudouridine synthase [Bacillus cereus VD115]
gi|423623028|ref|ZP_17598806.1| RluA family pseudouridine synthase [Bacillus cereus VD148]
gi|228666088|gb|EEL21553.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-3]
gi|228678977|gb|EEL33186.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-28]
gi|401128992|gb|EJQ36675.1| RluA family pseudouridine synthase [Bacillus cereus BAG5O-1]
gi|401178911|gb|EJQ86084.1| RluA family pseudouridine synthase [Bacillus cereus HuB5-5]
gi|401259801|gb|EJR65975.1| RluA family pseudouridine synthase [Bacillus cereus VD148]
gi|401260381|gb|EJR66554.1| RluA family pseudouridine synthase [Bacillus cereus VD115]
gi|401636521|gb|EJS54275.1| RluA family pseudouridine synthase [Bacillus cereus BAG1O-2]
gi|407384036|gb|AFU14537.1| putative RNA pseudouridine synthase ylyB [Bacillus thuringiensis
MC28]
Length = 302
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V KV++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSV-KVNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|229162828|ref|ZP_04290785.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
R309803]
gi|228620710|gb|EEK77579.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
R309803]
Length = 302
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 104/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+VV K ++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKVV-KGNYKVKANDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|408356929|ref|YP_006845460.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
gi|407727700|dbj|BAM47698.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
Length = 304
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + R+D +S I+ SRA++Q+ I+SG V++NG V K ++ V+ D V +
Sbjct: 8 VDLEQANTRIDKLLSDIINDTSRAQIQNWIKSGHVTVNGSEV-KANYRVQENDQVVWELP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + ++ E E IPLDI+YEDD++L+VNKP MVVHP+ G+ +GTLVN +LHH T
Sbjct: 67 EQESIKIEPEAIPLDIIYEDDDILIVNKPKGMVVHPSVGHHSGTLVNALLHHTKQLT--- 123
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+I+G RPGIVHR+D+ TSGLL++AK
Sbjct: 124 --------------------TINGED-RPGIVHRIDRDTSGLLIIAK 149
>gi|359457301|ref|ZP_09245864.1| RluA family pseudouridine synthase [Acaryochloris sp. CCMEE 5410]
Length = 328
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 104/172 (60%), Gaps = 21/172 (12%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE +V+ A R+D W+++++D +SR+ +Q I G V IN Q+ + + ++ GD V
Sbjct: 3 KLEFSVEGSAA--RIDRWLANQVDSLSRSHIQKLIEQGHVQINHQICTSKKYALQIGDQV 60
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I QPL E E + L+I++ED ++L+VNKPA +VVHPAPG+ATGTLV+G+L HC
Sbjct: 61 EVHIPAPQPLALEPELMDLEILFEDAHLLIVNKPAGLVVHPAPGHATGTLVHGLLAHC-- 118
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ + + S G RPGIVHRLDK T+G ++VAK
Sbjct: 119 -----------------QEGQGTTLSGIGGVERPGIVHRLDKDTTGAVMVAK 153
>gi|402833548|ref|ZP_10882161.1| pseudouridine synthase, RluA family [Selenomonas sp. CM52]
gi|402280041|gb|EJU28811.1| pseudouridine synthase, RluA family [Selenomonas sp. CM52]
Length = 301
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 98/167 (58%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD A RLD +++ R +SR+ +Q I SG V +NG+ +K + ++ GD V +
Sbjct: 7 VDEGAAGERLDRFLAGRELEVSRSHIQKLIESGCVLVNGRT-AKANAKLREGDAVETELP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E Q L EDIPLDI+YED +V+V+NK MVVHPA G A GTLVN +LHHC
Sbjct: 66 EAQELEILPEDIPLDILYEDSDVIVINKARGMVVHPAAGAADGTLVNALLHHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ED+ S I+G IRPGIVHRLDK TSG++V AK
Sbjct: 119 ---------EDL-------SGINGV-IRPGIVHRLDKDTSGVMVAAK 148
>gi|229098363|ref|ZP_04229309.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-29]
gi|423441376|ref|ZP_17418282.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X2-1]
gi|423464450|ref|ZP_17441218.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-1]
gi|423533792|ref|ZP_17510210.1| RluA family pseudouridine synthase [Bacillus cereus HuB2-9]
gi|423540952|ref|ZP_17517343.1| RluA family pseudouridine synthase [Bacillus cereus HuB4-10]
gi|228685068|gb|EEL39000.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-29]
gi|401172140|gb|EJQ79361.1| RluA family pseudouridine synthase [Bacillus cereus HuB4-10]
gi|402418037|gb|EJV50337.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X2-1]
gi|402420717|gb|EJV52988.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-1]
gi|402464011|gb|EJV95711.1| RluA family pseudouridine synthase [Bacillus cereus HuB2-9]
Length = 302
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V KV++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSV-KVNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|261222782|ref|ZP_05937063.1| ribosomal large subunit pseudouridine synthase D [Brucella ceti
B1/94]
gi|340791252|ref|YP_004756717.1| RluA family pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|260921366|gb|EEX88019.1| ribosomal large subunit pseudouridine synthase D [Brucella ceti
B1/94]
gi|340559711|gb|AEK54949.1| RluA family pseudouridine synthase [Brucella pinnipedialis B2/94]
Length = 347
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 25/179 (13%)
Query: 54 NYAGVQLEETV-DTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHN 111
N +L+E + D+ A RLD W+++ + +SR+RVQS I G V+I+G +
Sbjct: 8 NEGKTRLKELIADSDAAGKRLDQWLAAALGPELSRSRVQSLIADGHVTIDGAPARETKQK 67
Query: 112 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171
++ G + +SE +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN
Sbjct: 68 LREGMNIAIVLSEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNA 127
Query: 172 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+++HC + S I G RPGIVHRLDK TSG++VVAK
Sbjct: 128 LIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 163
>gi|390451644|ref|ZP_10237213.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
gi|389660660|gb|EIM72321.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
Length = 156
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 94/158 (59%), Gaps = 24/158 (15%)
Query: 63 TVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
TV+ + RLD W+SSR+ +SR+R+Q+ IR+G V+ + V++ H V G++ T
Sbjct: 22 TVEAEHAGERLDRWLSSRLGASVSRSRLQTLIRAGAVTTDENPVTETKHRVAEGEVYALT 81
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
I E +P +AE IPL+++YEDD ++V+NKPA +VVHPAPGN +GTLVN +LHHC
Sbjct: 82 IPEAEPAEPKAEAIPLEVLYEDDALIVINKPAGLVVHPAPGNWSGTLVNALLHHCG---- 137
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLD 219
S S G RPGIVHRLD
Sbjct: 138 -------------------ASLSGIGGVRRPGIVHRLD 156
>gi|404329198|ref|ZP_10969646.1| pseudouridylate synthase [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 308
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 98/172 (56%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T D R D W S SR+R+Q I++G ING+ + + S+ V+ GD
Sbjct: 5 QVTRTADLPDEGKRADKWASDLFPDESRSRLQQLIKNGEFQINGKKI-RPSYRVQTGDKA 63
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ +P E IPLDIVYED +VLVVNKP MVVHP+PG+ +GTLVN +LHHC+
Sbjct: 64 TLVLPAPEPAAVVPEAIPLDIVYEDHDVLVVNKPRGMVVHPSPGHMSGTLVNALLHHCT- 122
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 123 ---------------DL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 151
>gi|169350183|ref|ZP_02867121.1| hypothetical protein CLOSPI_00927 [Clostridium spiroforme DSM 1552]
gi|169292966|gb|EDS75099.1| pseudouridine synthase, RluA family [Clostridium spiroforme DSM
1552]
Length = 306
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 98/159 (61%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD I+ ++ +SR ++Q I GLV +NG+V K S+ K D + TI + L E
Sbjct: 15 RLDKIIALNMEELSRTQIQEMIGRGLVLVNGKV-EKASYKTKLNDQIEITIEDNSDLEIE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPL++VYED +V+V++KP M+VHP+PG +GTLVN +L HC
Sbjct: 74 AEDIPLNVVYEDKDVIVIDKPTGMIVHPSPGITSGTLVNALLFHC--------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 119 -KDL-------SGINGVN-RPGIVHRIDKETSGLLMVAK 148
>gi|15806790|ref|NP_295512.1| ribosomal large subunit pseudouridine synthase D [Deinococcus
radiodurans R1]
gi|6459564|gb|AAF11343.1|AE002020_2 ribosomal large subunit pseudouridine synthase D [Deinococcus
radiodurans R1]
Length = 338
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 103/175 (58%), Gaps = 25/175 (14%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
V LE T D RLDA + S + G+SR++V I +GLV I+G+ SK S ++GG+
Sbjct: 22 VPLEFTADPG----RLDA-VVSLLSGVSRSQVAGWIEAGLVEIDGRAASKASQKLRGGEA 76
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ + L + E ED+PLD+++ED++++ +NKP MV HPAPG +GTLVN +L S
Sbjct: 77 LRVSPPPLPSAQVEPEDVPLDVIFEDEHLIAINKPPGMVTHPAPGVISGTLVNALLGRMS 136
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
LP Q+ F D D RPGIVHRLDK TSG++VVAK +
Sbjct: 137 LP-----EQQDF-DGPD--------------GYRPGIVHRLDKDTSGVIVVAKTV 171
>gi|228909719|ref|ZP_04073542.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 200]
gi|228850008|gb|EEM94839.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 200]
Length = 302
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ + SR++VQ I+ +V++NG+ V KV++ VK D + TI E + L +
Sbjct: 17 RIDKFVAGINNEWSRSQVQQWIKDDVVTVNGKTV-KVNYKVKEEDEITVTIPEPEALDIQ 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 76 PEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT-------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 --DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|167037761|ref|YP_001665339.1| RluA family pseudouridine synthase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116174|ref|YP_004186333.1| RluA family pseudouridine synthase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856595|gb|ABY95003.1| pseudouridine synthase, RluA family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929265|gb|ADV79950.1| pseudouridine synthase, RluA family [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 305
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++ +D +R+ ++ I GLV +NG+ V K S+ VK D V + E + +
Sbjct: 19 RIDVFLAAELD-YTRSYIKKLIVDGLVFVNGKTV-KPSYKVKENDEVVLNVPEAEKIDVL 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPLDI+YEDD+++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PEDIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G +RPGIVHRLDK TSG++VVAK
Sbjct: 122 --------KNLSGINGI-LRPGIVHRLDKDTSGVMVVAK 151
>gi|403386611|ref|ZP_10928668.1| RluA family pseudouridine synthase [Clostridium sp. JC122]
Length = 306
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 98/159 (61%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +IS ++G SR+ VQ I V +N ++ K ++ +K D++N + + + L E
Sbjct: 16 RLDLFISENLEGKSRSYVQGLIEDEKVKVNEKI-KKSNYKLKLEDVINIEVPQPRELEIE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDI LDIVYED +V++VNK MVVHPAPGN GTLVN +L+HC
Sbjct: 75 AEDISLDIVYEDSDVIIVNKAKDMVVHPAPGNYNGTLVNALLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSG+LV+AK
Sbjct: 120 -KDL-------SGINGVA-RPGIVHRIDKDTSGILVIAK 149
>gi|15615105|ref|NP_243408.1| hypothetical protein BH2542 [Bacillus halodurans C-125]
gi|10175162|dbj|BAB06261.1| BH2542 [Bacillus halodurans C-125]
Length = 305
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
QL T+ + R+D +++++ + SR +VQ I+ G V ING+ + K ++ V+ GD +
Sbjct: 4 QLTWTISEQQQGERIDKFLTAQGEEWSRTQVQQWIKDGHVLINGRTI-KSNYKVETGDTL 62
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E + L E+IP++I+YED++V VVNKP MVVHPAPG+ TGTLVN +++HC+
Sbjct: 63 ELFVPEPEVLEVVPENIPIEIIYEDEDVAVVNKPRGMVVHPAPGHTTGTLVNALMYHCN- 121
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 122 ---------------DL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 150
>gi|169831112|ref|YP_001717094.1| RluA family pseudouridine synthase [Candidatus Desulforudis
audaxviator MP104C]
gi|169637956|gb|ACA59462.1| pseudouridine synthase, RluA family [Candidatus Desulforudis
audaxviator MP104C]
Length = 309
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 104/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV+ + + RLD +++ + +SRAR+Q I LV++NG+ ++ SH V+GGD V +
Sbjct: 8 TVEEEDEQTRLDVFLAGQNPELSRARIQKLISLELVTVNGRP-ARASHRVRGGDCVELKV 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + R E E IPL++ +ED +VLVVNKP +VVHPA G+ +GTLVN +LHHC
Sbjct: 67 PDPETPRIEPEAIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHC------ 120
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHRLD+ TSGLL+VAK
Sbjct: 121 ----------RDL-------SGINGI-LRPGIVHRLDRDTSGLLMVAK 150
>gi|312872998|ref|ZP_07733058.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
gi|325912701|ref|ZP_08175084.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII 60-B]
gi|311091520|gb|EFQ49904.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
gi|325478122|gb|EGC81251.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII 60-B]
Length = 311
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V ++ +RLD +I++ I ISR RVQ I+ L++ NG + +K+S+ V D +N I
Sbjct: 11 VKSEESGVRLDKYIATHISTISRTRVQELIKQKLITTNG-LQTKLSYKVNTNDKINIEIP 69
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
QPL + E++ LDI+YEDD+V+VVNKP MVVHP+ G+ TLVNG+++H LA
Sbjct: 70 SPQPLSLDPENLNLDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIYHTK--NLAK 127
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DE F RPGIVHR+DK TSGLL++AK
Sbjct: 128 C-------------DEIF---------RPGIVHRIDKDTSGLLMIAK 152
>gi|309808015|ref|ZP_07701936.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
01V1-a]
gi|308168744|gb|EFO70841.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
01V1-a]
Length = 311
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V ++ +RLD +I++ I ISR RVQ I+ L++ NG + +K+S+ V D +N I
Sbjct: 11 VKSEESGVRLDKYIATHISTISRTRVQELIKQKLITTNG-LQTKLSYKVNTNDKINIEIP 69
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
QPL + E++ LDI+YEDD+V+VVNKP MVVHP+ G+ TLVNG+++H LA
Sbjct: 70 SPQPLSLDPENLNLDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIYHTK--NLAE 127
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DE F RPGIVHR+DK TSGLL++AK
Sbjct: 128 C-------------DEIF---------RPGIVHRIDKDTSGLLMIAK 152
>gi|20807974|ref|NP_623145.1| pseudouridylate synthase [Thermoanaerobacter tengcongensis MB4]
gi|20516547|gb|AAM24749.1| Pseudouridylate synthase, 23S RNA-specific [Thermoanaerobacter
tengcongensis MB4]
Length = 309
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 99/159 (62%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++S +D SR+ ++ I GLV +NG+ V K S+ VK D V I E + +
Sbjct: 19 RIDVFLASELD-YSRSYIKKLIEEGLVLVNGKNV-KPSYKVKEDDEVIVNIKEAEKIEVV 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YED++++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDEDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G +RPGIVHRLDK TSG++VVAK
Sbjct: 122 --------KNLSGINGI-LRPGIVHRLDKDTSGVMVVAK 151
>gi|15895383|ref|NP_348732.1| pseudouridylate synthase [Clostridium acetobutylicum ATCC 824]
gi|337737331|ref|YP_004636778.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
gi|384458840|ref|YP_005671260.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|15025103|gb|AAK80072.1|AE007712_8 Predicted pseudouridylate synthase, YLYB B.subtilis ortholog
[Clostridium acetobutylicum ATCC 824]
gi|325509529|gb|ADZ21165.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|336291055|gb|AEI32189.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
Length = 305
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 98/159 (61%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ + ISR+ +Q I V +NG+ V K ++ +K D V I + + L+ E
Sbjct: 16 RIDVYLAQEFENISRSHIQDLIGKKKVFVNGKAV-KSNYKLKSRDNVEFEIPDNEELKIE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED +++VVNK MVVHPAPGN GTLVN +L+HC
Sbjct: 75 AENIPLDIVYEDRDIVVVNKAQGMVVHPAPGNYNGTLVNALLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSG+LVVAK
Sbjct: 120 -KDL-------SGINGV-LRPGIVHRIDKDTSGILVVAK 149
>gi|302389579|ref|YP_003825400.1| ribosomal large subunit pseudouridine synthase D
[Thermosediminibacter oceani DSM 16646]
gi|302200207|gb|ADL07777.1| ribosomal large subunit pseudouridine synthase D
[Thermosediminibacter oceani DSM 16646]
Length = 307
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 25/174 (14%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
G L+ V K RLD ++S I+ +SR+ +Q I G V +N ++V K + +K GD
Sbjct: 2 GKFLKILVQEDDAKKRLDVFLSGVINDLSRSYIQKGIEEGWVKVNERIV-KPHYKLKKGD 60
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++ I +PL E E+IPLDI++ED +++VVNKP MVV+PAPGN +GTLVN +L+H
Sbjct: 61 VIVADIPSPKPLSLEPENIPLDIIHEDRDIIVVNKPRGMVVYPAPGNYSGTLVNALLYHT 120
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHRLDK TSG++VVAK
Sbjct: 121 ----------------KDL-------SGINGV-MRPGIVHRLDKDTSGVIVVAK 150
>gi|254415358|ref|ZP_05029119.1| pseudouridine synthase, RluA family [Coleofasciculus chthonoplastes
PCC 7420]
gi|196177833|gb|EDX72836.1| pseudouridine synthase, RluA family [Coleofasciculus chthonoplastes
PCC 7420]
Length = 330
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ ++ +SR+R+Q I G V +N + + ++ GD ++ TI + +PL +
Sbjct: 14 RLDRYLAQQLPDLSRSRIQKLIEEGNVQLNHNLCTSKKATIQPGDSIHLTIPDAKPLDLK 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IPLDI+YEDD +L+VNKPA++VVHPAPG+ GTLVN +L HC P LA
Sbjct: 74 PEAIPLDILYEDDQILIVNKPANLVVHPAPGHENGTLVNALLAHC--PNLAG-------- 123
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKV 231
G RPGIVHRLDK T+G + +AK
Sbjct: 124 --------------IGGVQRPGIVHRLDKDTTGAIAIAKT 149
>gi|83589720|ref|YP_429729.1| ribosomal large subunit pseudouridine synthase D [Moorella
thermoacetica ATCC 39073]
gi|83572634|gb|ABC19186.1| ribosomal large subunit pseudouridine synthase D [Moorella
thermoacetica ATCC 39073]
Length = 306
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 24/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E V +A R+DAW++ + +SR+R+Q + +G +++ K ++ ++GG+ V
Sbjct: 1 MEVVVPPEARGRRIDAWLAGELPEVSRSRIQQLLEAGEITLALPGRLKANYRLRGGERVR 60
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E L A E IPLDI+YED++++VVNKP MVVHPAPG+ GTLVN +L+HC
Sbjct: 61 VRLPEPTLLAARPEAIPLDILYEDEDIIVVNKPQGMVVHPAPGSEGGTLVNALLYHCG-- 118
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHRLDK TSG+LV AK
Sbjct: 119 --------------DL-------SGINGV-LRPGIVHRLDKDTSGILVAAK 147
>gi|259500628|ref|ZP_05743530.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
gi|302191317|ref|ZP_07267571.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners AB-1]
gi|259168012|gb|EEW52507.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
Length = 311
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V ++ +RLD +I++ I ISR RVQ I+ L++ NG + +K+S+ V D +N I
Sbjct: 11 VKSEESGVRLDKYIATHISTISRTRVQELIKQKLITTNG-LQTKLSYKVNTNDKINIEIP 69
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
QPL + E++ LDI+YEDD+V+VVNKP MVVHP+ G+ TLVNG+++H LA
Sbjct: 70 SPQPLSLDPENLNLDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIYHTK--NLAE 127
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DE F RPGIVHR+DK TSGLL++AK
Sbjct: 128 C-------------DEIF---------RPGIVHRIDKDTSGLLMIAK 152
>gi|392960490|ref|ZP_10325958.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
gi|421054753|ref|ZP_15517718.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|421061524|ref|ZP_15523839.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|421066823|ref|ZP_15528377.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|421071616|ref|ZP_15532732.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392440434|gb|EIW18114.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|392446881|gb|EIW24152.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392449275|gb|EIW26404.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|392453103|gb|EIW30007.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|392455067|gb|EIW31874.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
Length = 308
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 107/166 (64%), Gaps = 26/166 (15%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
+++AG+ RLD +++ ++ GISR+ VQ I SG V++N ++ +K ++ V+ D + +I E
Sbjct: 11 ESQAGE-RLDIFLTKQMPGISRSAVQRLISSGDVTVNKKI-AKANYKVQELDDIQVSIPE 68
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
++ L AE+IPL I+YED++++++NK MVVHPAPGN GTLVN +L HC
Sbjct: 69 IKTLELTAEEIPLAILYEDNDIIIINKSRGMVVHPAPGNYNGTLVNALLEHC-------- 120
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ED+ S I+G + RPGIVHRLDK TSG++ VAK
Sbjct: 121 --------EDL-------SGINGVA-RPGIVHRLDKDTSGVMAVAK 150
>gi|229174558|ref|ZP_04302089.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
MM3]
gi|423401265|ref|ZP_17378438.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
gi|423457923|ref|ZP_17434720.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
gi|423478031|ref|ZP_17454746.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
gi|228608927|gb|EEK66218.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
MM3]
gi|401148307|gb|EJQ55800.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
gi|401654255|gb|EJS71798.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
gi|402428193|gb|EJV60290.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
Length = 302
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V KV++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSV-KVNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PDPEELDIQAEDMGLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|336054036|ref|YP_004562323.1| pseudouridine synthase [Lactobacillus kefiranofaciens ZW3]
gi|333957413|gb|AEG40221.1| Pseudouridine synthase [Lactobacillus kefiranofaciens ZW3]
Length = 302
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +IS RI +SR R++ I+ + +N Q KVS+ ++ GD + + ++PL
Sbjct: 15 RLDKYISERISDLSRTRIKELIKDKNILVN-QKSEKVSYKIQAGDKIEINVPAVKPLDVV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YED++V+VVNKP MVVHPAPG+ TLVN +L+H LA S E F
Sbjct: 74 PENIPLDIIYEDNDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK--DLAQS-PEGF-- 128
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHR+DK TSGLL++AK
Sbjct: 129 -------------------RPGIVHRIDKDTSGLLMIAK 148
>gi|309803986|ref|ZP_07698068.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
11V1-d]
gi|309807269|ref|ZP_07701239.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
03V1-b]
gi|309809874|ref|ZP_07703724.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
2503V10-D]
gi|312871741|ref|ZP_07731829.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
3008A-a]
gi|312874168|ref|ZP_07734202.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
gi|312875676|ref|ZP_07735677.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
gi|315653539|ref|ZP_07906459.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners ATCC 55195]
gi|325912067|ref|ZP_08174465.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII
143-D]
gi|329920256|ref|ZP_08277040.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
1401G]
gi|349611433|ref|ZP_08890668.1| hypothetical protein HMPREF1027_00095 [Lactobacillus sp. 7_1_47FAA]
gi|308163905|gb|EFO66170.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
11V1-d]
gi|308166329|gb|EFO68538.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
03V1-b]
gi|308169826|gb|EFO71869.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
2503V10-D]
gi|311088930|gb|EFQ47373.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
gi|311090238|gb|EFQ48648.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
gi|311092683|gb|EFQ51039.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
3008A-a]
gi|315488901|gb|EFU78543.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners ATCC 55195]
gi|325476017|gb|EGC79185.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII
143-D]
gi|328936301|gb|EGG32749.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
1401G]
gi|348608526|gb|EGY58506.1| hypothetical protein HMPREF1027_00095 [Lactobacillus sp. 7_1_47FAA]
Length = 311
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V ++ +RLD +I++ I ISR RVQ I+ L++ NG + +K+S+ V D +N I
Sbjct: 11 VKSEESGVRLDKYIATHISTISRTRVQELIKQKLITTNG-LQTKLSYKVNTNDKINIEIP 69
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
QPL + E++ LDI+YEDD+V+VVNKP MVVHP+ G+ TLVNG+++H LA
Sbjct: 70 YPQPLSLDPENLNLDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIYHTK--NLAK 127
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DE F RPGIVHR+DK TSGLL++AK
Sbjct: 128 C-------------DEIF---------RPGIVHRIDKDTSGLLMIAK 152
>gi|261367025|ref|ZP_05979908.1| ribosomal large subunit pseudouridine synthase D [Subdoligranulum
variabile DSM 15176]
gi|282571143|gb|EFB76678.1| pseudouridine synthase, RluA family [Subdoligranulum variabile DSM
15176]
Length = 310
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 105/181 (58%), Gaps = 33/181 (18%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVS 109
EPI AG Q AG RLDAW++ + +GISR +Q+ I V+ +G+ V+K
Sbjct: 2 EPIEITAGPQ-------TAG--RLDAWLAGQCEGISRNALQTLIEQERVTKDGRPVNK-K 51
Query: 110 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 169
V G + + + +P+ A +DIPL IVYED++++VVNKP MVVHPAPGN GTLV
Sbjct: 52 EKVCPGAVYLLQLPDPKPIEAVPQDIPLSIVYEDNDLIVVNKPKGMVVHPAPGNPDGTLV 111
Query: 170 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 229
N +L+HC+ S I GA IRPGIVHR+DK TSGLLVVA
Sbjct: 112 NALLYHCAGQL----------------------SGIGGA-IRPGIVHRIDKDTSGLLVVA 148
Query: 230 K 230
K
Sbjct: 149 K 149
>gi|47570307|ref|ZP_00240954.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
G9241]
gi|47553016|gb|EAL11420.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
G9241]
Length = 302
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V KV++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINGEWSRSQVQQWIKDDVVTVNGKSV-KVNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|262067278|ref|ZP_06026890.1| pseudouridine synthase, RluA family [Fusobacterium periodonticum
ATCC 33693]
gi|291379004|gb|EFE86522.1| pseudouridine synthase, RluA family [Fusobacterium periodonticum
ATCC 33693]
Length = 315
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 107/176 (60%), Gaps = 24/176 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+ + +RLD +++ +I+ +R+ ++ I + V IN ++++K +K G+ V
Sbjct: 7 KFEFEVNPEYEGMRLDKYLAEQIEEATRSYLEKLIDNSYVKINSKIINKNGRKLKSGEKV 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I E + + EAE+IPLDIV+E+D+ ++VNK +MVVHPA GN TGTLVN +L++ +
Sbjct: 67 EISIPEEENIDIEAENIPLDIVFENDDFILVNKKYNMVVHPAYGNYTGTLVNALLYYTN- 125
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
L+S N +IRPGI+HRLDK TSGL++VAK F+
Sbjct: 126 -NLSSVN----------------------GNIRPGIIHRLDKDTSGLILVAKNNFA 158
>gi|326203544|ref|ZP_08193408.1| pseudouridine synthase, RluA family [Clostridium papyrosolvens DSM
2782]
gi|325986364|gb|EGD47196.1| pseudouridine synthase, RluA family [Clostridium papyrosolvens DSM
2782]
Length = 304
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D+W++ ++ SR+ +Q G + +N +V +K ++ VK GD + ++ + + L
Sbjct: 13 VRIDSWLAGNLEDYSRSYIQKLCLDGNIWVN-EVQAKSNYKVKPGDNIKVSVPDAEILDV 71
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E EDIPLDIVYED +++V+NKP MVVHPA GN +GTLVN ++ HC ++ S
Sbjct: 72 EPEDIPLDIVYEDKHIIVINKPKGMVVHPAVGNYSGTLVNALMKHCG---------DSLS 122
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D I+G IRPGIVHR+DK TSGLLVVAK
Sbjct: 123 D-------------INGV-IRPGIVHRIDKDTSGLLVVAK 148
>gi|254500895|ref|ZP_05113046.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
gi|222436966|gb|EEE43645.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
Length = 341
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 99/169 (58%), Gaps = 23/169 (13%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TVD + R+DA ++S ++ +SR R+QS I++G VSI G + + + V GD + +
Sbjct: 19 TVDPEDAGKRIDAVLASHLETLSRNRIQSLIKAGDVSIGGAKIGEPKYRVNEGDEITLHL 78
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + + EDIPL +V+ED +V+V++KPA +VVHP GN TGTLVN ++HHC
Sbjct: 79 PEPEDPDPKGEDIPLSVVFEDAHVIVIDKPAGLVVHPGAGNWTGTLVNALIHHCG----- 133
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKV 231
+ S I G RPGIVHR+DK TSGLLVVAK
Sbjct: 134 -----------------DSLSGIGGVK-RPGIVHRIDKDTSGLLVVAKT 164
>gi|376260970|ref|YP_005147690.1| RluA family pseudouridine synthase [Clostridium sp. BNL1100]
gi|373944964|gb|AEY65885.1| pseudouridine synthase, RluA family [Clostridium sp. BNL1100]
Length = 304
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 98/160 (61%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D+W++ ++ SR+ +Q G + +N +V K ++ VK GD + + + + L
Sbjct: 13 VRIDSWLAVNLEDYSRSYIQKLCLDGNIWVN-EVQVKSNYKVKPGDSIKVNVPDAEILDV 71
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E EDIPLDIVYED +++V+NKP MVVHPA GN TGTLVN ++ HC ++ S
Sbjct: 72 EPEDIPLDIVYEDKHIIVINKPKGMVVHPAVGNYTGTLVNALMKHCG---------DSLS 122
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D I+G IRPGIVHR+DK TSGLLVVAK
Sbjct: 123 D-------------INGV-IRPGIVHRIDKDTSGLLVVAK 148
>gi|312111747|ref|YP_003990063.1| pseudouridine synthase [Geobacillus sp. Y4.1MC1]
gi|311216848|gb|ADP75452.1| pseudouridine synthase, RluA family [Geobacillus sp. Y4.1MC1]
Length = 304
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 101/167 (60%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D + R+D I++ + SR++VQ I++ LV++N Q V K ++ GD+V +
Sbjct: 8 IDEEYDNERIDKVIAALNEDWSRSKVQQWIKNQLVTVNDQHV-KANYKCSAGDIVVVRLP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E +PL E E+IPLDI YED +VLVVNKP MVVHPAPG+ GTLVN +L HC
Sbjct: 67 EPEPLYVEPENIPLDIYYEDADVLVVNKPRGMVVHPAPGHMRGTLVNALLAHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------HDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|307944601|ref|ZP_07659941.1| ribosomal large subunit pseudouridine synthase D [Roseibium sp.
TrichSKD4]
gi|307772350|gb|EFO31571.1| ribosomal large subunit pseudouridine synthase D [Roseibium sp.
TrichSKD4]
Length = 341
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 98/168 (58%), Gaps = 23/168 (13%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD RLDA ++ +I +SR R+Q+ I+ G V+++G+ + + H V G + T+
Sbjct: 20 VDADDHGKRLDAVLAGQIASLSRNRIQTLIKGGEVTVDGRKIVEPKHRVNEGQTLTLTLP 79
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + + E+IPL I+YEDD+++VV+KPA +VVHP GN TGTLVN ++HHC
Sbjct: 80 EPEDPDPKGENIPLSIIYEDDHLIVVDKPAGLVVHPGAGNLTGTLVNALIHHCG------ 133
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKV 231
S S G+ RPGIVHR+DK TSGLLVVAK
Sbjct: 134 -----------------DSLSGIGSVKRPGIVHRIDKDTSGLLVVAKT 164
>gi|254478536|ref|ZP_05091911.1| pseudouridine synthase, RluA family [Carboxydibrachium pacificum
DSM 12653]
gi|214035544|gb|EEB76243.1| pseudouridine synthase, RluA family [Carboxydibrachium pacificum
DSM 12653]
Length = 309
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 99/161 (61%), Gaps = 30/161 (18%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++S +D SR+ ++ I GLV +NG+ V K S+ VK D V I E + +
Sbjct: 19 RIDVFLASELD-YSRSYIKKLIEEGLVLVNGKNV-KPSYKVKEDDEVVVNIPEAEKIEVV 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YED++++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDEDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
++SG + +RPGIVHRLDK TSG++VVAK
Sbjct: 122 -----------KNLSGINGILRPGIVHRLDKDTSGVMVVAK 151
>gi|423522277|ref|ZP_17498750.1| RluA family pseudouridine synthase [Bacillus cereus HuA4-10]
gi|401174971|gb|EJQ82174.1| RluA family pseudouridine synthase [Bacillus cereus HuA4-10]
Length = 302
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V KV++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSV-KVNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|330814384|ref|YP_004358623.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Pelagibacter sp. IMCC9063]
gi|327487479|gb|AEA81884.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Pelagibacter sp. IMCC9063]
Length = 327
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 23/168 (13%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +I + SR ++ I+ G + IN + + + S V GD V ++
Sbjct: 9 TVSEEQNLKRVDQFIVEELPTFSRTKISKLIKEGALLINNEPIEERSKKVSFGDEVELSV 68
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E P + ++IPLD+VYEDD++LV+NKP MVVHP GN GTLVN +LHHC
Sbjct: 69 PEPVPTDLKPQNIPLDVVYEDDDLLVINKPIGMVVHPGAGNPDGTLVNALLHHC------ 122
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+E S I+G +RPGIVHR+DK TSGLLVVAK
Sbjct: 123 ----------------KENLSGING-ELRPGIVHRIDKDTSGLLVVAK 153
>gi|336236130|ref|YP_004588746.1| RluA family pseudouridine synthase [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720663|ref|ZP_17694845.1| pseudouridine synthase, rluA family [Geobacillus thermoglucosidans
TNO-09.020]
gi|335362985|gb|AEH48665.1| pseudouridine synthase, RluA family [Geobacillus
thermoglucosidasius C56-YS93]
gi|383366016|gb|EID43307.1| pseudouridine synthase, rluA family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 304
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 100/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D + R+D I++ + SR++VQ I+ LV++N Q V K ++ GD+V +
Sbjct: 8 IDEEYDNERIDKVIAALNEDWSRSKVQQWIKKQLVTVNDQHV-KANYKCSAGDIVVVRLP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E +PL E E+IPLDI YED +VLVVNKP MVVHPAPG+ GTLVN +L HC
Sbjct: 67 EPEPLYVEPENIPLDIYYEDADVLVVNKPRGMVVHPAPGHMRGTLVNALLAHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------HDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|428776662|ref|YP_007168449.1| ribosomal large subunit pseudouridine synthase D [Halothece sp. PCC
7418]
gi|428690941|gb|AFZ44235.1| ribosomal large subunit pseudouridine synthase D [Halothece sp. PCC
7418]
Length = 309
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
+ V GK RLD ++ SR+R+Q I G V +N + + ++ GD + +
Sbjct: 5 QKVAIAQGKQRLDRALAQAFPDFSRSRLQKLIEQGNVQVNEDICTNKKQGIEAGDRLILS 64
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ LQPL E E IPLDI+YED+++++VNKPA +VVHPAPG+ +GTLVN +L HC
Sbjct: 65 VPPLQPLSVEPEAIPLDILYEDEHLIIVNKPAGLVVHPAPGHESGTLVNALLAHC----- 119
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ + I G RPGIVHRLDK T+G +VVAK F+
Sbjct: 120 ------------------DHLAGIGGVE-RPGIVHRLDKDTTGAIVVAKNDFA 153
>gi|293401501|ref|ZP_06645644.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373452301|ref|ZP_09544216.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
gi|291305139|gb|EFE46385.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371966794|gb|EHO84276.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
Length = 305
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 97/159 (61%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +IS + D +SR+RVQ ++ G+V +NG K ++ +K D + + + A+
Sbjct: 16 RIDKYISEKEDDLSRSRVQQLLQEGIVCVNGNA-CKANYKIKPKDHITAVFCDEIEMEAK 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E + LDI YED +V+V+NKP MVVHPA GN TGTLVNG+L+HC
Sbjct: 75 PEQMDLDIRYEDHDVIVINKPKGMVVHPAVGNQTGTLVNGLLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK T+GLL+VAK
Sbjct: 120 -KDL-------SGINGV-LRPGIVHRIDKDTTGLLIVAK 149
>gi|428220400|ref|YP_007104570.1| RluA family pseudouridine synthase [Synechococcus sp. PCC 7502]
gi|427993740|gb|AFY72435.1| pseudouridine synthase, RluA family [Synechococcus sp. PCC 7502]
Length = 301
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD++++ +++ ISR+++Q I+ G V IN V ++ +K GD + + E+QPL +
Sbjct: 14 RLDSYLAQKLEEISRSQIQKLIQQGFVQINESVCTEKKTLLKVGDRLILEVPEVQPLDLQ 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+ IPL+I+YED+++LV+NKP +VVHPAPG++ TLVN +L HC P L
Sbjct: 74 PQSIPLEILYEDEHLLVINKPVGLVVHPAPGHSDLTLVNALLAHC--PNL---------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G RPGIVHRLDK TSG +VVAK
Sbjct: 122 -----------SGINGVQ-RPGIVHRLDKDTSGAIVVAK 148
>gi|81428560|ref|YP_395560.1| pseudouridylate synthase [Lactobacillus sakei subsp. sakei 23K]
gi|78610202|emb|CAI55251.1| Pseudouridylate synthase, 23S rRNA-specific [Lactobacillus sakei
subsp. sakei 23K]
Length = 301
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 98/170 (57%), Gaps = 28/170 (16%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E T+ T+ G R+D +S + SR+++Q ++ LV INGQ SK +H V + ++
Sbjct: 6 EFTITTETG--RIDKVLSQLLPDYSRSQIQQWLKKDLVEINGQT-SKGNHKVVADEKISV 62
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
TI + L EDIPLDIVYEDD VLVVNKP MVVHP+PG+ GTLVN +L H L
Sbjct: 63 TIPDPVSLDLVPEDIPLDIVYEDDQVLVVNKPQGMVVHPSPGHPNGTLVNALLAHTPL-- 120
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ----------------------SEINGV-FRPGIVHRIDKDTSGLLMVAK 147
>gi|209550662|ref|YP_002282579.1| pseudouridine synthase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424917077|ref|ZP_18340441.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209536418|gb|ACI56353.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392853253|gb|EJB05774.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 341
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLDAW+++++ + SR+R+++ I+ G VS+ G+ V+
Sbjct: 3 DPFKQAAGNRKVLTADETA-EGRLDAWLTAQVGEEFSRSRIKALIKDGQVSLRGEPVTDP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD T+ E + + EDIPLDI++ED++++V++KP+ +VVHP GN TGTL
Sbjct: 62 QRKVRNGDSFEITLPEPEDPTPQGEDIPLDILHEDEDLIVISKPSGLVVHPGSGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHC + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIHHCG----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|163814069|ref|ZP_02205461.1| hypothetical protein COPEUT_00222 [Coprococcus eutactus ATCC 27759]
gi|158450518|gb|EDP27513.1| pseudouridine synthase, RluA family [Coprococcus eutactus ATCC
27759]
Length = 304
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 96/161 (59%), Gaps = 28/161 (17%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +S DG SR+ ++ GL+ +N + V K S+ V+ GDM++ ++ + +
Sbjct: 16 RLDKVLSEYFDGYSRSFIKKLFDDGLILVNSKAV-KPSYKVRAGDMIDISVPDPVSIDIV 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPLDI+YEDD+V++VNKP MVVHPAPG+ +GTLVNG+++H
Sbjct: 75 PEDIPLDIIYEDDDVILVNKPKGMVVHPAPGHYSGTLVNGLMYH---------------- 118
Query: 192 AEDISDDEEFSSSISG--ASIRPGIVHRLDKGTSGLLVVAK 230
F SS+SG RPGIVHR+D T+G+LVV K
Sbjct: 119 ---------FGSSLSGINGEFRPGIVHRIDMDTTGVLVVCK 150
>gi|423367937|ref|ZP_17345369.1| RluA family pseudouridine synthase [Bacillus cereus VD142]
gi|401082798|gb|EJP91063.1| RluA family pseudouridine synthase [Bacillus cereus VD142]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VKG D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSV-KGNYKVKGNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|428301463|ref|YP_007139769.1| ribosomal large subunit pseudouridine synthase D [Calothrix sp. PCC
6303]
gi|428238007|gb|AFZ03797.1| ribosomal large subunit pseudouridine synthase D [Calothrix sp. PCC
6303]
Length = 307
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 92/160 (57%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+RVQ I G V +N ++ S VK GD + I E+QPL +
Sbjct: 14 RLDRYLAEELSELSRSRVQQLIEQGNVQLNEKICSSKKLTVKLGDRITLKIPEIQPLNLQ 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
+ IPLDI+YEDD +L+VNK A +VVHPAPG+ GTLVN +L HC +LP +
Sbjct: 74 PQAIPLDILYEDDQILIVNKSAGLVVHPAPGHPDGTLVNALLAHCPNLPGI--------- 124
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 125 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 148
>gi|423470106|ref|ZP_17446850.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-2]
gi|423558545|ref|ZP_17534847.1| RluA family pseudouridine synthase [Bacillus cereus MC67]
gi|401191813|gb|EJQ98835.1| RluA family pseudouridine synthase [Bacillus cereus MC67]
gi|402437358|gb|EJV69382.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-2]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VKG D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSV-KGNYKVKGNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|423452804|ref|ZP_17429657.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
gi|423511927|ref|ZP_17488458.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-1]
gi|401139363|gb|EJQ46925.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
gi|402450188|gb|EJV82022.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-1]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VKG D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSV-KGNYKVKGNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|335357350|ref|ZP_08549220.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
animalis KCTC 3501]
Length = 301
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 28/171 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E T+ T+ G RLD +++ SR+++Q + G + +N + K + VK GD ++
Sbjct: 2 IEATITTQTG--RLDKVLTTVFPQYSRSQIQQLLEQGNILVN-ETQQKGKYKVKAGDKIS 58
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
T E++ L E E+I LDIVYEDD+V+VV+KP MVVHPAPG+ TLVN +L+HC L
Sbjct: 59 LTEPEIKELVVEPENIALDIVYEDDDVIVVDKPQGMVVHPAPGHEDHTLVNALLYHCPL- 117
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 118 -----------------------STING-TYRPGIVHRIDKDTSGLLMVAK 144
>gi|182417977|ref|ZP_02949285.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum 5521]
gi|237667420|ref|ZP_04527404.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182378148|gb|EDT75683.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum 5521]
gi|237655768|gb|EEP53324.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 304
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 101/167 (60%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + LR+D ++S+ SR+ +Q I V +N + + K ++ +K D + I
Sbjct: 8 VDEQDEGLRIDKYLSNIFKDKSRSFIQGLIEKENVKVNSKTL-KSNYKLKKADEIEIMIP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L EAE+IP+DIVYED++V+VVNK MVVHPAPGN GTLVN +L+HC
Sbjct: 67 EPEILSVEAENIPIDIVYEDEDVIVVNKAQGMVVHPAPGNYNGTLVNALLYHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSG+LV+AK
Sbjct: 120 ---------KDL-------SSINGV-IRPGIVHRIDKDTSGILVIAK 149
>gi|23098941|ref|NP_692407.1| hypothetical protein OB1486 [Oceanobacillus iheyensis HTE831]
gi|22777169|dbj|BAC13442.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 303
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 100/170 (58%), Gaps = 25/170 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
+ V + GK R+D ++ + SR+++Q I GLV +NG V K ++ GD +
Sbjct: 5 QHIVTEQQGKTRVDKLLTQLLADQSRSQIQGWIDEGLVEVNG-VSVKANYKCVEGDALTW 63
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I E +PL E E+IPLD+VYED +V+V+NKP MVVHP+ G+ TGTLV+ +L+HC
Sbjct: 64 EIPETKPLILEPENIPLDVVYEDSDVIVINKPKGMVVHPSAGHQTGTLVHALLYHC---- 119
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G RPGIVHR+DK TSGLLVVAK
Sbjct: 120 ----------------DD---LSGINGIE-RPGIVHRIDKDTSGLLVVAK 149
>gi|340754453|ref|ZP_08691207.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
2_1_31]
gi|229423963|gb|EEO39010.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
2_1_31]
Length = 315
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 102/164 (62%), Gaps = 24/164 (14%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD +++ +I+ +R+ ++ I + V IN +V++K +K G+ + +I E + +
Sbjct: 19 MRLDKYLAEQIEEATRSYLEKLIDNSYVKINSKVINKNGRKLKSGEKIEISIPEEENIDI 78
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAE+IPLDIV+E+D+ ++VNK +MVVHPA GN TGTLVN +L++ + L+S N
Sbjct: 79 EAENIPLDIVFENDDFILVNKKYNMVVHPAYGNYTGTLVNALLYYTN--NLSSVN----- 131
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+IRPGI+HRLDK TSGL++VAK F+
Sbjct: 132 -----------------GNIRPGIIHRLDKDTSGLILVAKNNFA 158
>gi|229168633|ref|ZP_04296355.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH621]
gi|228614789|gb|EEK71892.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH621]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VKG D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSV-KGNYKVKGNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|423592111|ref|ZP_17568142.1| RluA family pseudouridine synthase [Bacillus cereus VD048]
gi|401232244|gb|EJR38746.1| RluA family pseudouridine synthase [Bacillus cereus VD048]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VKG D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSV-KGNYKVKGNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|321315311|ref|YP_004207598.1| pseudouridylate synthase [Bacillus subtilis BSn5]
gi|320021585|gb|ADV96571.1| pseudouridylate synthase [Bacillus subtilis BSn5]
Length = 303
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPLDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|187932847|ref|YP_001886621.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
gi|187721000|gb|ACD22221.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D ++S ++G SR+ +Q I + +N +++ K ++ +K D + T+ E + L+
Sbjct: 15 IRIDKYLSEMLNGKSRSFIQGLIEKESIKVNDKLI-KNNYKLKACDEIVITMPEAETLKV 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E+EDI LDI+YED +V+VVNK MVVHPAPGN GTLVN +L HC+
Sbjct: 74 ESEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTLVNALLFHCT------------- 120
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ SSI+G IRPGIVHR+DK TSG+LV+AK
Sbjct: 121 ---DL-------SSINGV-IRPGIVHRIDKDTSGVLVIAK 149
>gi|417081029|ref|ZP_11950621.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus MTCC 5462]
gi|328461874|gb|EGF34095.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus MTCC 5462]
Length = 260
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 87/134 (64%), Gaps = 26/134 (19%)
Query: 97 LVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMV 156
+V++NG+ V K + V GD+V TI E++PL+A AE IPL+IVYEDD V+VVNKP MV
Sbjct: 1 MVTVNGKPV-KANFKVTAGDVVTVTIPEVKPLKAVAEPIPLEIVYEDDQVIVVNKPQGMV 59
Query: 157 VHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 216
VHPAPG+ GTLVNG+L+H LP I+G IRPGIVH
Sbjct: 60 VHPAPGHPDGTLVNGLLYHTKLP------------------------GINGV-IRPGIVH 94
Query: 217 RLDKGTSGLLVVAK 230
R+DK TSGLL+VAK
Sbjct: 95 RIDKDTSGLLMVAK 108
>gi|239826543|ref|YP_002949167.1| pseudouridine synthase [Geobacillus sp. WCH70]
gi|239806836|gb|ACS23901.1| pseudouridine synthase, RluA family [Geobacillus sp. WCH70]
Length = 304
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 101/167 (60%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D + R+D I++ + SR++VQ I+ GLV++N Q V K ++ GD+V +
Sbjct: 8 IDAEYDNERIDKVIAALNEEWSRSKVQQWIKDGLVTVNDQHV-KANYKSSAGDVVVVRLP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E +PL E+IPLDI YED +VLVVNKP MVVHPAPG+ GTLVN +L HC+
Sbjct: 67 EPEPLHVVPENIPLDIYYEDADVLVVNKPRGMVVHPAPGHMRGTLVNALLAHCT------ 120
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ----------DL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|229134702|ref|ZP_04263511.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST196]
gi|423518584|ref|ZP_17495065.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-4]
gi|228648748|gb|EEL04774.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST196]
gi|401160792|gb|EJQ68167.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-4]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VKG D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSV-KGNYKVKGNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|163941632|ref|YP_001646516.1| RluA family pseudouridine synthase [Bacillus weihenstephanensis
KBAB4]
gi|229013077|ref|ZP_04170242.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
DSM 2048]
gi|423489069|ref|ZP_17465751.1| RluA family pseudouridine synthase [Bacillus cereus BtB2-4]
gi|423494794|ref|ZP_17471438.1| RluA family pseudouridine synthase [Bacillus cereus CER057]
gi|423498414|ref|ZP_17475031.1| RluA family pseudouridine synthase [Bacillus cereus CER074]
gi|423598796|ref|ZP_17574796.1| RluA family pseudouridine synthase [Bacillus cereus VD078]
gi|423661268|ref|ZP_17636437.1| RluA family pseudouridine synthase [Bacillus cereus VDM022]
gi|423669467|ref|ZP_17644496.1| RluA family pseudouridine synthase [Bacillus cereus VDM034]
gi|423674354|ref|ZP_17649293.1| RluA family pseudouridine synthase [Bacillus cereus VDM062]
gi|163863829|gb|ABY44888.1| pseudouridine synthase, RluA family [Bacillus weihenstephanensis
KBAB4]
gi|228748331|gb|EEL98191.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
DSM 2048]
gi|401150887|gb|EJQ58339.1| RluA family pseudouridine synthase [Bacillus cereus CER057]
gi|401160463|gb|EJQ67841.1| RluA family pseudouridine synthase [Bacillus cereus CER074]
gi|401237066|gb|EJR43523.1| RluA family pseudouridine synthase [Bacillus cereus VD078]
gi|401298594|gb|EJS04194.1| RluA family pseudouridine synthase [Bacillus cereus VDM034]
gi|401301309|gb|EJS06898.1| RluA family pseudouridine synthase [Bacillus cereus VDM022]
gi|401309905|gb|EJS15238.1| RluA family pseudouridine synthase [Bacillus cereus VDM062]
gi|402432317|gb|EJV64376.1| RluA family pseudouridine synthase [Bacillus cereus BtB2-4]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VKG D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSV-KGNYKVKGNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|385813705|ref|YP_005850098.1| Pseudouridine synthase [Lactobacillus helveticus H10]
gi|323466424|gb|ADX70111.1| Pseudouridine synthase [Lactobacillus helveticus H10]
Length = 310
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 102/172 (59%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+ + G RLD ++S +I +SR RV+ ++ + +N +V KVS+ ++ GD +
Sbjct: 11 KYELQVENEYG--RLDKFVSEQIPDLSRTRVKELVKEKEILVNHKV-EKVSYKIQAGDKI 67
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ ++PL E+IPLDIVYED++V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 68 EINVPAVKPLDVVPENIPLDIVYEDEDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT-- 125
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ + S G RPGIVHR+DK TSGLL++AK
Sbjct: 126 --------------------QDLAQSPEG--FRPGIVHRIDKDTSGLLMIAK 155
>gi|188590369|ref|YP_001921578.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
gi|188500650|gb|ACD53786.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D ++S ++G SR+ +Q I + +N +++ K ++ +K D + T+ E + L+
Sbjct: 15 IRIDKYLSEMLNGKSRSFIQGLIEKESIKVNNKLI-KSNYKLKACDEIVITMPEAEILKV 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E+EDI LDI+YED +V+VVNK MVVHPAPGN GTLVN +L HC+
Sbjct: 74 ESEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTLVNALLFHCT------------- 120
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ SSI+G IRPGIVHR+DK TSG+LV+AK
Sbjct: 121 ---DL-------SSINGV-IRPGIVHRIDKDTSGVLVIAK 149
>gi|309805623|ref|ZP_07699665.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
09V1-c]
gi|308165061|gb|EFO67302.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
09V1-c]
Length = 311
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V ++ +RLD +I++ I ISR RVQ I+ L++ NG + +K+S+ V D +N I
Sbjct: 11 VKSEESGVRLDKYIATHISTISRTRVQELIKQKLITTNG-LQTKLSYKVNTNDKINIEIP 69
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
QPL + E++ LDI+YEDD+V+VVNKP MVVHP+ G+ TLVNG+++H
Sbjct: 70 SPQPLSLDPENLNLDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIYHT------- 122
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ + ++I +RPGIVHR+DK TSGLL++AK
Sbjct: 123 ---KNLAKCDEI--------------LRPGIVHRIDKDTSGLLMIAK 152
>gi|449094239|ref|YP_007426730.1| hypothetical protein C663_1590 [Bacillus subtilis XF-1]
gi|449028154|gb|AGE63393.1| hypothetical protein C663_1590 [Bacillus subtilis XF-1]
Length = 303
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|152976253|ref|YP_001375770.1| RluA family pseudouridine synthase [Bacillus cytotoxicus NVH
391-98]
gi|152025005|gb|ABS22775.1| pseudouridine synthase, RluA family [Bacillus cytotoxicus NVH
391-98]
Length = 302
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 101/159 (63%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++S SR +VQ I+ G++++NG+ V K ++ VK D + T+ E + L
Sbjct: 17 RIDKFVASVNHEWSRTQVQQWIKDGVITVNGKTV-KGNYKVKENDEITVTVPEPEELDIR 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG+++HC+
Sbjct: 76 AEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMYHCT-------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 --DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|384175288|ref|YP_005556673.1| ribosomal large subunit pseudouridine synthase D [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349594512|gb|AEP90699.1| ribosomal large subunit pseudouridine synthase D [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 303
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|261219246|ref|ZP_05933527.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261316161|ref|ZP_05955358.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|261322307|ref|ZP_05961504.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|265987225|ref|ZP_06099782.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
gi|265998740|ref|ZP_06111297.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|260924335|gb|EEX90903.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261294997|gb|EEX98493.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|261295384|gb|EEX98880.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|262553429|gb|EEZ09198.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|264659422|gb|EEZ29683.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
Length = 334
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 100/171 (58%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E D+ A RLD W+++ + +SR+RVQS I G V+I+G + ++ G +
Sbjct: 3 ELIADSDAAGKRLDQWLAAALGPELSRSRVQSLIADGHVTIDGAPARETKQKLREGMNIA 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+SE +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 IVLSEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
>gi|163758760|ref|ZP_02165847.1| putative ribosomal large subunit pseudouridine synthase protein
[Hoeflea phototrophica DFL-43]
gi|162284050|gb|EDQ34334.1| putative ribosomal large subunit pseudouridine synthase protein
[Hoeflea phototrophica DFL-43]
Length = 339
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLDAW++ + G+SR+RV++ I +G VS+NG + H +K GD ++ + + +
Sbjct: 22 RLDAWLAEALAPGLSRSRVKALIEAGAVSVNGTPARQAKHKIKPGDEISLVVPDPEDPEP 81
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E EDIPL I+YED +++V+NK A +VVHP GN TGTLVN ++HHC
Sbjct: 82 EGEDIPLSILYEDADLIVINKQAGLVVHPGAGNWTGTLVNALIHHCG------------- 128
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLD+ T+G++VVAK
Sbjct: 129 ---------DSLSGIGGVR-RPGIVHRLDRDTTGVMVVAK 158
>gi|221309420|ref|ZP_03591267.1| hypothetical protein Bsubs1_08546 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313745|ref|ZP_03595550.1| hypothetical protein BsubsN3_08482 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318669|ref|ZP_03599963.1| hypothetical protein BsubsJ_08416 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322942|ref|ZP_03604236.1| hypothetical protein BsubsS_08522 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767360|ref|NP_389429.3| pseudouridylate synthase [Bacillus subtilis subsp. subtilis str.
168]
gi|430755971|ref|YP_007209751.1| Signal peptidase II lsp [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|452914367|ref|ZP_21962994.1| pseudouridine synthase, RluA family protein [Bacillus subtilis
MB73/2]
gi|254763395|sp|Q45480.3|YLYB_BACSU RecName: Full=Uncharacterized RNA pseudouridine synthase YlyB;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|1373157|gb|AAB57767.1| orf-X; hypothetical protein; Method: conceptual translation
supplied by author [Bacillus subtilis subsp. subtilis
str. 168]
gi|225184987|emb|CAB13420.3| pseudouridylate synthase [Bacillus subtilis subsp. subtilis str.
168]
gi|407958953|dbj|BAM52193.1| pseudouridylate synthase [Synechocystis sp. PCC 6803]
gi|407964530|dbj|BAM57769.1| pseudouridylate synthase [Bacillus subtilis BEST7003]
gi|430020491|gb|AGA21097.1| Signal peptidase II lsp [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|452116787|gb|EME07182.1| pseudouridine synthase, RluA family protein [Bacillus subtilis
MB73/2]
Length = 303
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|402775791|ref|YP_006629735.1| Pseudouridylate synthase [Bacillus subtilis QB928]
gi|402483460|gb|AFQ59969.1| Pseudouridylate synthase [Bacillus subtilis QB928]
Length = 303
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|289578538|ref|YP_003477165.1| pseudouridine synthase [Thermoanaerobacter italicus Ab9]
gi|289528251|gb|ADD02603.1| pseudouridine synthase, RluA family [Thermoanaerobacter italicus
Ab9]
Length = 305
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++ +D +R+ ++ I GLV +NG+ V K S+ VK D V I E + +
Sbjct: 19 RIDVFLAAELD-YTRSYIKKLIVDGLVFVNGKTV-KPSYKVKENDEVVVNIPEAEKIDVL 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YEDD+++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G +RPGIVHRLDK TSG++VVAK
Sbjct: 122 --------KNLSGINGI-LRPGIVHRLDKDTSGVMVVAK 151
>gi|428279141|ref|YP_005560876.1| hypothetical protein BSNT_02552 [Bacillus subtilis subsp. natto
BEST195]
gi|291484098|dbj|BAI85173.1| hypothetical protein BSNT_02552 [Bacillus subtilis subsp. natto
BEST195]
Length = 303
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASSENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|89055892|ref|YP_511343.1| ribosomal large subunit pseudouridine synthase D [Jannaschia sp.
CCS1]
gi|88865441|gb|ABD56318.1| ribosomal large subunit pseudouridine synthase D [Jannaschia sp.
CCS1]
Length = 310
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 90/151 (59%), Gaps = 27/151 (17%)
Query: 82 DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVY 141
+ ISR R+ I +G V+ING+VV+ V GD V T+ + + AEDIPLDIV+
Sbjct: 5 EAISRTRLARLIPAGAVAINGRVVTDPKARVAEGDGVEITVEDAAEVETVAEDIPLDIVH 64
Query: 142 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEF 201
EDD+++VVNKPA MVVHPAPG+ +GTLVN +LHH F
Sbjct: 65 EDDDLIVVNKPAGMVVHPAPGSPSGTLVNALLHH-------------------------F 99
Query: 202 SSSIS--GASIRPGIVHRLDKGTSGLLVVAK 230
+S G RPGIVHR+DK TSGLLVVAK
Sbjct: 100 GGKLSGVGGEKRPGIVHRIDKDTSGLLVVAK 130
>gi|225628223|ref|ZP_03786257.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
gi|261757311|ref|ZP_06001020.1| ribosomal large subunit pseudouridine synthase [Brucella sp. F5/99]
gi|225616069|gb|EEH13117.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
gi|261737295|gb|EEY25291.1| ribosomal large subunit pseudouridine synthase [Brucella sp. F5/99]
Length = 334
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 100/171 (58%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E D+ A RLD W+++ + +SR+RVQS I G V+I+G + ++ G +
Sbjct: 3 ELIADSDAAGKRLDQWLAAALGPELSRSRVQSLIAYGHVTIDGAPARETKQKLREGMNIA 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+SE +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 IVLSEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
>gi|395240816|ref|ZP_10417840.1| Pseudouridine synthase [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475598|emb|CCI87817.1| Pseudouridine synthase [Lactobacillus gigeriorum CRBIP 24.85]
Length = 311
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 27/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TVD KAG +RLD +I+ +I+ +SR RV I+ G +++N + K S+ V D V +
Sbjct: 17 TVD-KAG-IRLDKYIADQIEDLSRTRVGELIKDGEITVNNKK-EKASYKVILNDEVKVHV 73
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
L+PL E E+IPLDI+YEDD+V+VVNKP MVVHP+ G+ TLVN +L+H
Sbjct: 74 PALKPLSLEPENIPLDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNALLYHT------ 127
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ +SS G RPGIVHR+DK TSGLL++AK
Sbjct: 128 ----------------KDLASSPEG--FRPGIVHRIDKDTSGLLMIAK 157
>gi|255528132|ref|ZP_05394960.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
gi|296186658|ref|ZP_06855060.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
gi|255508173|gb|EET84585.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
gi|296048695|gb|EFG88127.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
Length = 305
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 101/170 (59%), Gaps = 25/170 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E +D + RLD ++S R++ SR+ +Q I V +NG ++ K ++ +K D +
Sbjct: 5 EFIIDENSVNTRLDLFLSERMEDKSRSYIQGLIEKSQVKVNG-ILKKSNYKLKIKDKILI 63
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
TI + L E EDIPLDIVYED +V+VVNKP MVVHPA G TGTLVN +L+HCS
Sbjct: 64 TIPDPVGLDIEPEDIPLDIVYEDSDVIVVNKPQGMVVHPASGVYTGTLVNALLNHCS--- 120
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G + RPGIVHR+DK TSG+LVVAK
Sbjct: 121 -------------DL-------SGINGVT-RPGIVHRIDKDTSGILVVAK 149
>gi|153008568|ref|YP_001369783.1| RluA family pseudouridine synthase [Ochrobactrum anthropi ATCC
49188]
gi|151560456|gb|ABS13954.1| pseudouridine synthase, RluA family [Ochrobactrum anthropi ATCC
49188]
Length = 334
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E T D+ A RLD W+++ + +SR+RVQS I G V+I+G + ++ G +
Sbjct: 3 ELTTDSDATGKRLDQWLAAALGPELSRSRVQSLIAEGHVTIDGAPAREAKQKLREGMTIA 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E +P AE+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 IVLPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
>gi|422314881|ref|ZP_16396332.1| RluA family pseudouridine synthase [Fusobacterium periodonticum
D10]
gi|404593241|gb|EKA94816.1| RluA family pseudouridine synthase [Fusobacterium periodonticum
D10]
Length = 318
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 102/164 (62%), Gaps = 24/164 (14%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD +++ +I+ +R+ ++ I + V IN +V++K +K G+ + +I E + +
Sbjct: 19 MRLDKYLAEQIEEATRSYLEKLIDNSYVKINSKVINKNGRKLKSGEKIEISIPEEENIDI 78
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAE+IPLDIV+E+D+ ++VNK +MVVHPA GN TGTLVN +L++ + L+S N
Sbjct: 79 EAENIPLDIVFENDDFILVNKKYNMVVHPAYGNYTGTLVNALLYYTN--NLSSVN----- 131
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+IRPGI+HRLDK TSGL++VAK F+
Sbjct: 132 -----------------GNIRPGIIHRLDKDTSGLILVAKNNFA 158
>gi|386758269|ref|YP_006231485.1| pseudouridylate synthase [Bacillus sp. JS]
gi|384931551|gb|AFI28229.1| pseudouridylate synthase [Bacillus sp. JS]
Length = 303
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|392940816|ref|ZP_10306460.1| pseudouridine synthase, RluA family [Thermoanaerobacter
siderophilus SR4]
gi|392292566|gb|EIW01010.1| pseudouridine synthase, RluA family [Thermoanaerobacter
siderophilus SR4]
Length = 307
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++ +D +R+ ++ I GLV +NG+ V K S+ VK D V I E + +
Sbjct: 19 RIDVFLAAELD-YTRSYIKKLIVDGLVFVNGKTV-KPSYKVKENDEVVVNIPEAEKIDVL 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YEDD+++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G +RPGIVHRLDK TSG++VVAK
Sbjct: 122 --------KNLSGINGI-LRPGIVHRLDKDTSGVMVVAK 151
>gi|167750498|ref|ZP_02422625.1| hypothetical protein EUBSIR_01474 [Eubacterium siraeum DSM 15702]
gi|167656424|gb|EDS00554.1| pseudouridine synthase, RluA family [Eubacterium siraeum DSM 15702]
Length = 303
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 28/166 (16%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K G R D +++ + GI+R+ + I G +NG++ +K + +K GD V + E Q
Sbjct: 8 KTGGERTDKFLALQDTGITRSAAAALIEQGCCLVNGKIAAK-NQKLKTGDTVTLDVPEAQ 66
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
P E+IPLDIVYED ++LVVNKP MVVHPAPG+ +GTLVN +++HC
Sbjct: 67 PADILPENIPLDIVYEDSDLLVVNKPKGMVVHPAPGHYSGTLVNALMYHC---------- 116
Query: 187 EAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
S+SG + IRPGIVHR+D+ TSGLL+VAK
Sbjct: 117 ---------------GDSLSGINGVIRPGIVHRIDRDTSGLLIVAK 147
>gi|404320463|ref|ZP_10968396.1| RluA family pseudouridine synthase [Ochrobactrum anthropi CTS-325]
Length = 334
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E T D+ A RLD W+++ + +SR+RVQS I G V+I+G + ++ G +
Sbjct: 3 ELTTDSDATGKRLDQWLAAALGPELSRSRVQSLIADGHVTIDGAPARETKQKLREGMTIA 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E +P AE+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 IVLPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
>gi|418297020|ref|ZP_12908862.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens CCNWGS0286]
gi|355538118|gb|EHH07365.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens CCNWGS0286]
Length = 340
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD+W++ + G SR+R+++ I G VS+NGQ V++ V GD + + E +
Sbjct: 24 RLDSWLAGEVSGDFSRSRLKALIEQGAVSLNGQPVTEPKKKVHPGDRIEIVMPEPEDPEP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPLD+ YED++++V+ KPA +VVHP GN TGTLVN ++HHC
Sbjct: 84 KGEDIPLDVEYEDEDLIVLIKPAGLVVHPGAGNWTGTLVNALIHHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ---------DSLSGIGGVK-RPGIVHRLDKETSGVMVVAK 160
>gi|300854258|ref|YP_003779242.1| ribosomal large subunit pseudouridine synthase D [Clostridium
ljungdahlii DSM 13528]
gi|300434373|gb|ADK14140.1| ribosomal large subunit pseudouridine synthase D [Clostridium
ljungdahlii DSM 13528]
Length = 302
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 97/160 (60%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++S SR+ +Q+ I LV +NG+ K ++ +K GD + TI + L
Sbjct: 15 MRLDVFLSKCFQDKSRSYIQNVIEYKLVEVNGKA-KKSNYKIKSGDNIEITIPDPVNLNI 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
++EDIPLDI+YED +V+VVNKP M+VHPAPG GTLVN +L+HC
Sbjct: 74 QSEDIPLDILYEDKDVIVVNKPQGMIVHPAPGVYEGTLVNALLNHC-------------- 119
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G + RPGIVHR+DK TSG+LVVAK
Sbjct: 120 --RDL-------SGINGVT-RPGIVHRIDKDTSGILVVAK 149
>gi|395784617|ref|ZP_10464444.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
gi|395422191|gb|EJF88402.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
Length = 341
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 24/176 (13%)
Query: 60 LEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+++ D A R+D W++ + + +SR+R+Q+ IR G + ++GQ++ + + +
Sbjct: 3 IQQITDENALGQRIDQWLAKKYHNELSRSRLQTLIREGYLKVDGQLIKEPKTKLHPNQTI 62
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I L+ + E E I LDI++EDD+++V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 63 ELIIPPLKNIHLEGEAIVLDILFEDDHIIVINKPAGLVVHPGNGNWTGTLVNALIHHCG- 121
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+S S G RPGIVHRLDK TSG++VVAK F+
Sbjct: 122 ----------------------YSLSGIGGVKRPGIVHRLDKNTSGVMVVAKNDFA 155
>gi|134299530|ref|YP_001113026.1| RluA family pseudouridine synthase [Desulfotomaculum reducens MI-1]
gi|134052230|gb|ABO50201.1| ribosomal large subunit pseudouridine synthase D [Desulfotomaculum
reducens MI-1]
Length = 306
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + K RLD +++++ ISR+ +Q I GLV+++G+ ++ +H ++ + ++ I
Sbjct: 8 VDGENAKCRLDVFLANQCQDISRSYIQKLIEDGLVTVDGKP-ARANHKLRVEETIHMQIP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ L+ E E+IPLDI YED +V+VVNKP MVVHPA GN GTLVN +L+HC
Sbjct: 67 PAEELKVEPENIPLDIYYEDSHVIVVNKPRGMVVHPAEGNIAGTLVNALLYHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHRLDK TSGL++ AK
Sbjct: 120 ---------HDL-------SGINGI-MRPGIVHRLDKDTSGLIMAAK 149
>gi|326389927|ref|ZP_08211490.1| pseudouridine synthase, RluA family [Thermoanaerobacter ethanolicus
JW 200]
gi|325993987|gb|EGD52416.1| pseudouridine synthase, RluA family [Thermoanaerobacter ethanolicus
JW 200]
Length = 305
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++ +D +R+ ++ I GLV +NG+ V K S+ VK D V I E + +
Sbjct: 19 RIDVFLAAELD-YTRSYIKKLIVDGLVFVNGKTV-KPSYKVKENDEVVVNIPEAEKIDVL 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YEDD+++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G +RPGIVHRLDK TSG++VVAK
Sbjct: 122 --------KNLSGINGI-LRPGIVHRLDKDTSGVMVVAK 151
>gi|220928062|ref|YP_002504971.1| pseudouridine synthase [Clostridium cellulolyticum H10]
gi|219998390|gb|ACL74991.1| pseudouridine synthase, RluA family [Clostridium cellulolyticum
H10]
Length = 304
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D+W++ ++ SR+ +Q G V NG + K ++ VK D + + E + L
Sbjct: 13 VRIDSWLAGNLEDYSRSYIQKLCLDGNVWANG-IQVKSNYRVKTDDNIKVNVPEAEILDV 71
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E EDIPLDIVYED +++V+NKP MVVHPA GN TGTLVN ++ HC ++ S
Sbjct: 72 EPEDIPLDIVYEDKHIIVINKPKGMVVHPAVGNYTGTLVNALMKHCG---------DSLS 122
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D I+G IRPGIVHR+DK TSGLLVVAK
Sbjct: 123 D-------------INGV-IRPGIVHRIDKDTSGLLVVAK 148
>gi|444313109|ref|ZP_21148668.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
gi|443483547|gb|ELT46390.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
Length = 334
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E T D+ A RLD W+++ + +SR+RVQS I G V+I+G + ++ G +
Sbjct: 3 ELTTDSDATGKRLDQWLAAALGPDLSRSRVQSLIAEGHVTIDGVPARETKQKLREGMTIA 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E +P AE+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 VVLPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
>gi|291530266|emb|CBK95851.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
siraeum 70/3]
Length = 304
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 97/164 (59%), Gaps = 24/164 (14%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K G R D +++ + GI+R+ + I G +NG++ +K + +K GD V + E Q
Sbjct: 9 KTGGERTDKFLALQDTGITRSAAAALIEQGCCLVNGKIAAK-NQKLKTGDTVTLDVPEAQ 67
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
P E+IPLDIVYED ++LVVNKP MVVHPAPG+ +GTLVN +++HC
Sbjct: 68 PADILPENIPLDIVYEDSDLLVVNKPKGMVVHPAPGHYSGTLVNALMYHCG--------- 118
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G IRPGIVHR+D+ TSGLL+VAK
Sbjct: 119 -------------DSLSGINGV-IRPGIVHRIDRDTSGLLIVAK 148
>gi|291542663|emb|CBL15773.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
bromii L2-63]
Length = 306
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 102/176 (57%), Gaps = 28/176 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E ++ + +RLD +IS +SR+ + I +G V +N VVSK + + GD+V
Sbjct: 3 EFKLNCETSGVRLDKFISDANIDLSRSAAVNLIENGAVLVNDSVVSK-KYKLSQGDIVVV 61
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
+ + P A+AE+IPLDIVYED+ +LVVNKP MVVHPA GN GTLVN +L+HC
Sbjct: 62 NVPDPTPYEAKAENIPLDIVYEDECLLVVNKPKGMVVHPAAGNYDGTLVNALLYHC---- 117
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAKVIFS 234
S+SG + +RPGIVHR+DK TSGLL+VAK FS
Sbjct: 118 ---------------------GDSLSGINGVLRPGIVHRIDKDTSGLLIVAKNDFS 152
>gi|23015589|ref|ZP_00055361.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 327
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 93/167 (55%), Gaps = 23/167 (13%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ + RLD W+++R+ +SR R+++ I G VS++ +S S VK G +
Sbjct: 14 VEPEEAATRLDRWLAARLPELSRTRIKALIEDGRVSLDATTISDASLRVKPGQCFTVEVP 73
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
P EA+DI L +VYED++++V++KPA MVVHPAPGN TLVN +L HC
Sbjct: 74 PDAPAEPEAQDIALSVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCG------ 127
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + I G RPGIVHR+DK TSGLLV AK
Sbjct: 128 ----------------ESLAGIGGVK-RPGIVHRIDKDTSGLLVAAK 157
>gi|52430462|ref|YP_089634.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
1330]
gi|161619586|ref|YP_001593473.1| RluA family pseudouridine synthase [Brucella canis ATCC 23365]
gi|163845235|ref|YP_001622890.1| RluA family pseudouridine synthase [Brucella suis ATCC 23445]
gi|237816033|ref|ZP_04595029.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
gi|256370063|ref|YP_003107574.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella microti CCM 4915]
gi|294850907|ref|ZP_06791583.1| ribosomal large subunit pseudouridine synthase D [Brucella sp. NVSL
07-0026]
gi|297248929|ref|ZP_06932637.1| ribosomal large subunit pseudouridine synthase D [Brucella abortus
bv. 5 str. B3196]
gi|376281305|ref|YP_005155311.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
VBI22]
gi|384225297|ref|YP_005616461.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
1330]
gi|423169261|ref|ZP_17155962.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|423172590|ref|ZP_17159263.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|423175726|ref|ZP_17162394.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|423178716|ref|ZP_17165359.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|423181848|ref|ZP_17168487.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|423185151|ref|ZP_17171786.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|423188305|ref|ZP_17174917.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
gi|423191444|ref|ZP_17178051.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
gi|47524301|gb|AAT34906.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella suis 1330]
gi|161336397|gb|ABX62702.1| pseudouridine synthase, RluA family [Brucella canis ATCC 23365]
gi|163675958|gb|ABY40068.1| pseudouridine synthase, RluA family [Brucella suis ATCC 23445]
gi|237788696|gb|EEP62908.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
gi|256000226|gb|ACU48625.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella microti CCM 4915]
gi|294821550|gb|EFG38546.1| ribosomal large subunit pseudouridine synthase D [Brucella sp. NVSL
07-0026]
gi|297174062|gb|EFH33419.1| ribosomal large subunit pseudouridine synthase D [Brucella abortus
bv. 5 str. B3196]
gi|343383477|gb|AEM18969.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
1330]
gi|358258904|gb|AEU06639.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
VBI22]
gi|374535160|gb|EHR06687.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|374535353|gb|EHR06879.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|374535447|gb|EHR06969.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|374544603|gb|EHR16072.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|374544770|gb|EHR16235.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|374545128|gb|EHR16592.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|374552956|gb|EHR24378.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
gi|374553149|gb|EHR24570.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
Length = 347
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 25/179 (13%)
Query: 54 NYAGVQLEETV-DTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHN 111
N +L+E + D+ A RLD W+++ + +SR+RVQS I G V+I+G +
Sbjct: 8 NEGKTRLKELIADSDAAGKRLDQWLAAALGPELSRSRVQSLIADGHVTIDGAPARETKQK 67
Query: 112 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171
++ G + + E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN
Sbjct: 68 LREGMNIAIVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNA 127
Query: 172 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+++HC + S I G RPGIVHRLDK TSG++VVAK
Sbjct: 128 LIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 163
>gi|393201806|ref|YP_006463648.1| pseudouridylate synthase, 23S RNA-specific [Solibacillus silvestris
StLB046]
gi|406664680|ref|ZP_11072455.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
isronensis B3W22]
gi|327441137|dbj|BAK17502.1| pseudouridylate synthase, 23S RNA-specific [Solibacillus silvestris
StLB046]
gi|405387528|gb|EKB46952.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
isronensis B3W22]
Length = 300
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 26/168 (15%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T++ AG+ R+D +S + SR+++ + + + +NG V K + VK GD++ T+
Sbjct: 7 TIEEFAGE-RIDKALSQMEESWSRSQISNWLDEERILVNGAAV-KAKYKVKQGDVIEVTV 64
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E++ L ED+ L+IVYED +VLVVNKP MVVHPAPG+ATGTLVNG++HHC
Sbjct: 65 PEVEDLEIIPEDLNLEIVYEDADVLVVNKPRGMVVHPAPGHATGTLVNGLMHHC------ 118
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 119 ----------KDL-------SGINGVA-RPGIVHRIDKDTSGLLMVAK 148
>gi|372210267|ref|ZP_09498069.1| ribosomal large subunit pseudouridine synthase D [Flavobacteriaceae
bacterium S85]
Length = 337
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 96/162 (59%), Gaps = 29/162 (17%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LR+D ++ + I ++R +VQ +++ G V +N +VV K +H VK GD+V + E P
Sbjct: 25 LRVDKFLMNFIMNVTRNKVQQAVKDGNVLVNDEVV-KANHKVKAGDVVRV-VFEYAPRET 82
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E E+IPLDIV+EDD V+VVNKPA MVVHP GN TGTLVN ++HH
Sbjct: 83 EILPENIPLDIVHEDDAVIVVNKPAGMVVHPGHGNYTGTLVNALMHH------------- 129
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
F + A RPG+VHR+DK TSGLLV+AK
Sbjct: 130 ------------FKNLPENADGRPGLVHRIDKDTSGLLVIAK 159
>gi|254304341|ref|ZP_04971699.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324533|gb|EDK89783.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 316
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 99/164 (60%), Gaps = 24/164 (14%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++S +I+ +R+ ++ I + V +N +++ K +K G+ + I E + +
Sbjct: 19 MRLDKYLSEQIEEATRSYLEKLIDNNFVKVNSKIIKKNGRKLKSGEKIEVLIPEEENIDI 78
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAE+IPLD+VYE+D+ +V+NK MVVHPA GN TGTLVN +L++ + L+S N
Sbjct: 79 EAENIPLDVVYENDDFIVINKNYGMVVHPAYGNYTGTLVNALLYYTN--NLSSVN----- 131
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+IRPGI+HRLDK TSGL+++AK F+
Sbjct: 132 -----------------GNIRPGIIHRLDKDTSGLILIAKNNFA 158
>gi|403514918|ref|YP_006655738.1| pseudouridine synthase [Lactobacillus helveticus R0052]
gi|403080356|gb|AFR21934.1| Pseudouridine synthase [Lactobacillus helveticus R0052]
Length = 303
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 96/159 (60%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S +I +SR RV+ ++ + +N +V KVS+ ++ GD + + ++PL
Sbjct: 15 RLDKFVSEQIPDLSRTRVKELVKEKEILVNHKV-EKVSYKIQAGDKIEINVPAVKPLDVV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYED++V+VVNKP MVVHPAPG+ TLVN +L+H LA S++
Sbjct: 74 PENIPLDIVYEDEDVIVVNKPQGMVVHPAPGHPDHTLVNTLLYHTQ--DLAQSSE----- 126
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHR+DK TSGLL++AK
Sbjct: 127 -----------------GFRPGIVHRIDKDTSGLLMIAK 148
>gi|256851102|ref|ZP_05556491.1| pseudouridylate synthase [Lactobacillus jensenii 27-2-CHN]
gi|260660526|ref|ZP_05861441.1| pseudouridylate synthase [Lactobacillus jensenii 115-3-CHN]
gi|297205967|ref|ZP_06923362.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii JV-V16]
gi|256616164|gb|EEU21352.1| pseudouridylate synthase [Lactobacillus jensenii 27-2-CHN]
gi|260548248|gb|EEX24223.1| pseudouridylate synthase [Lactobacillus jensenii 115-3-CHN]
gi|297149093|gb|EFH29391.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii JV-V16]
Length = 301
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 101/171 (59%), Gaps = 28/171 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E V TKAG RLD +IS D +SR+RVQ + SG + +NG+ K S+ V D +
Sbjct: 4 FELIVATKAG--RLDKYISEHSD-LSRSRVQELLGSGDILVNGKQ-EKPSYKVANNDQIT 59
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ +L PL E EDIPLDIVYED++V+VVNKP MVVHP+ G+ TLVN +++H
Sbjct: 60 VHVPKLVPLNVEPEDIPLDIVYEDEDVIVVNKPQGMVVHPSAGHPNHTLVNALMNHTKF- 118
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LA+S E F RPGIVHR+DK TSGLL++AK
Sbjct: 119 -LAAS-PEGF---------------------RPGIVHRIDKDTSGLLMIAK 146
>gi|260887804|ref|ZP_05899067.1| ribosomal large subunit pseudouridine synthase D [Selenomonas
sputigena ATCC 35185]
gi|330838700|ref|YP_004413280.1| pseudouridine synthase, RluA family [Selenomonas sputigena ATCC
35185]
gi|260862480|gb|EEX76980.1| ribosomal large subunit pseudouridine synthase D [Selenomonas
sputigena ATCC 35185]
gi|329746464|gb|AEB99820.1| pseudouridine synthase, RluA family [Selenomonas sputigena ATCC
35185]
Length = 301
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 98/167 (58%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD A RLD +++ R +SR+ +Q I SG V +NG+ +K + ++ GD V +
Sbjct: 7 VDEGAAGERLDRFLAGRELEVSRSHIQKLIESGCVLVNGRT-AKANAKLREGDAVETELP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L EDIPLDI+YED +V+V+NK MVVHPA G A GTLVN +LHHC
Sbjct: 66 EARELEILPEDIPLDILYEDSDVIVINKARGMVVHPAAGAADGTLVNALLHHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ED+ S I+G IRPGIVHRLDK TSG++V AK
Sbjct: 119 ---------EDL-------SGINGV-IRPGIVHRLDKDTSGVMVAAK 148
>gi|218899046|ref|YP_002447457.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
gi|228902397|ref|ZP_04066552.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 4222]
gi|228966845|ref|ZP_04127889.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar sotto str. T04001]
gi|402564764|ref|YP_006607488.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-771]
gi|423359071|ref|ZP_17336574.1| RluA family pseudouridine synthase [Bacillus cereus VD022]
gi|434376996|ref|YP_006611640.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-789]
gi|218543499|gb|ACK95893.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
gi|228792944|gb|EEM40502.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228857254|gb|EEN01759.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 4222]
gi|401084943|gb|EJP93189.1| RluA family pseudouridine synthase [Bacillus cereus VD022]
gi|401793416|gb|AFQ19455.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-771]
gi|401875553|gb|AFQ27720.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-789]
Length = 302
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ + SR++VQ I+ +V++NG+ V KV++ VK D + TI + + L +
Sbjct: 17 RIDKFVAGINNEWSRSQVQQWIKDDVVTVNGKAV-KVNYKVKEEDEITVTIPDPEALDIQ 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 76 PEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT-------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 --DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|435853644|ref|YP_007314963.1| pseudouridine synthase, RluA family [Halobacteroides halobius DSM
5150]
gi|433670055|gb|AGB40870.1| pseudouridine synthase, RluA family [Halobacteroides halobius DSM
5150]
Length = 305
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 25/170 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E + K + R+D +++++ D +SR +Q I+S V +NGQ + K S+ + GD V
Sbjct: 6 EFRISDKDNEQRIDKFLANKNDDLSRNYIQKLIKSNQVVVNGQRIKK-SYELVAGDNVKL 64
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I E + L E +DIPL+I+Y+D++++V+NK +VVHPAPG+ +GTLVN +L+HC
Sbjct: 65 IIPEPKELDLEPQDIPLNILYDDNDIIVINKQPDLVVHPAPGHESGTLVNALLYHC---- 120
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G IRPGIVHRLDK TSG +VVAK
Sbjct: 121 -------------------DNLSGINGV-IRPGIVHRLDKDTSGAMVVAK 150
>gi|347549239|ref|YP_004855567.1| hypothetical protein LIV_1819 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982310|emb|CBW86304.1| Conserved hypothetical protein [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 302
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 106/167 (63%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K + R+D ++ + G SR+ +Q ++SG +++NG++ +K ++ V+ GD ++ +
Sbjct: 8 IEEKNARERIDKAVAE-LTGKSRSAIQIMLKSGDITVNGEI-AKPNYKVQVGDEIHLEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI YED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPETLEVLAEDIPLDIYYEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 ---------KDL-------SGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|422340105|ref|ZP_16421060.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|355370350|gb|EHG17735.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 316
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++S +I+ +R+ ++ I + V +N +++ K +K G+ + I E + +
Sbjct: 19 MRLDKYLSEQIEEATRSYLEKLIDNNFVKVNSKIIKKNGRKLKSGEKIEVLIPEEENIDI 78
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAE+IPLD+VYE+D+ +V+NK MVVHPA GN TGTLVN +L++ + L+S N
Sbjct: 79 EAENIPLDVVYENDDFIVINKNYGMVVHPAYGNYTGTLVNALLYYTN--NLSSVN----- 131
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+IRPGI+HRLDK TSGL+++AK
Sbjct: 132 -----------------GNIRPGIIHRLDKDTSGLILIAK 154
>gi|418939767|ref|ZP_13493154.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
gi|375053486|gb|EHS49878.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
Length = 341
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 24/178 (13%)
Query: 54 NYAGVQLEETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
N A ++E + + + RLDAW++++++G SR RV++ I G + INGQ V++ +
Sbjct: 6 NEAAAPMKELIAGEDAEGRLDAWLTAQLEGEFSRNRVKALIEQGAIKINGQAVTEPKRKI 65
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
K GD + + E + + E+IPLD++YED +++V+ KP +VVHP GN TGTLVN +
Sbjct: 66 KPGDTLTIELPEPEDPEPKGENIPLDVLYEDADLIVIAKPPGLVVHPGAGNWTGTLVNAL 125
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++HC + S I G RPGIVHRLDK TSG++VVAK
Sbjct: 126 IYHCG----------------------DSLSGIGGVK-RPGIVHRLDKDTSGVMVVAK 160
>gi|323489511|ref|ZP_08094738.1| putative RNA pseudouridine synthase ylyB [Planococcus donghaensis
MPA1U2]
gi|323396642|gb|EGA89461.1| putative RNA pseudouridine synthase ylyB [Planococcus donghaensis
MPA1U2]
Length = 303
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 104/160 (65%), Gaps = 27/160 (16%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D +SS IDG SR+++ + ++ G V +NG+ V K ++ V+ D++ T EL+ L
Sbjct: 16 RVDKAVSS-IDGDWSRSQISNWVKEGAVKVNGETV-KPNYKVRLQDIIIVTPPELEELDV 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
ED+ L+IVYED++VLVVNKP MVVHPAPG+A GTLVNG++HHC+
Sbjct: 74 VPEDLNLEIVYEDEDVLVVNKPKGMVVHPAPGHAKGTLVNGLMHHCT------------- 120
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---DL-------SGINGV-VRPGIVHRIDKDTSGLLMVAK 149
>gi|334340921|ref|YP_004545901.1| RluA family pseudouridine synthase [Desulfotomaculum ruminis DSM
2154]
gi|334092275|gb|AEG60615.1| pseudouridine synthase, RluA family [Desulfotomaculum ruminis DSM
2154]
Length = 309
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 98/167 (58%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + K RLD +I+ + +SR+ VQ I G V++N SK ++ ++ GD V +
Sbjct: 8 VDGERAKCRLDIFITGQCAELSRSYVQKLIEEGRVTVNDNP-SKANYKLRAGDRVQLEVP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ LR E E IPLDI YED +V+VVNK MVVHPA GN +GTLVN +L+HC
Sbjct: 67 PAEELRVEPEKIPLDIYYEDADVVVVNKVRGMVVHPAEGNHSGTLVNALLYHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHRLDK TSGL++VAK
Sbjct: 120 ---------RDL-------SGINGI-LRPGIVHRLDKDTSGLIMVAK 149
>gi|334121150|ref|ZP_08495224.1| pseudouridine synthase, RluA family [Microcoleus vaginatus FGP-2]
gi|333455436|gb|EGK84085.1| pseudouridine synthase, RluA family [Microcoleus vaginatus FGP-2]
Length = 321
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 98/178 (55%), Gaps = 25/178 (14%)
Query: 53 ANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNV 112
A V+ E D RLD W+S++I +SR+R+Q+ I G V +N + + +V
Sbjct: 8 AQIYTVENTEEFDRSNVNQRLDIWLSNQIPDLSRSRIQTLISQGNVKVNDETCTSKKISV 67
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
K GD + + E+Q + E IPLDI+YEDD+++++NKPA +VVHPA G+ GTLVN +
Sbjct: 68 KTGDRIQIILPEIQATNLQPEAIPLDILYEDDSLIIINKPAGLVVHPAAGHQDGTLVNAL 127
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L HC L + I G RPGIVHRLDK T+G + +AK
Sbjct: 128 LAHCPL------------------------AEIGGVQ-RPGIVHRLDKDTTGAIAIAK 160
>gi|405377633|ref|ZP_11031573.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
gi|397325899|gb|EJJ30224.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
Length = 341
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 97/160 (60%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLDAW+++++ + SR+R+++ I+ G V + G ++ V+ GD + E +
Sbjct: 24 RLDAWLTAQVGEEFSRSRIKALIKDGQVFLKGAPITDPQKKVRAGDSYEIILPEPEDPAP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPLDI+YED++V+V++KPA +VVHP PGN TGTLVN +++HC
Sbjct: 84 KGEDIPLDILYEDEDVIVISKPAGLVVHPGPGNWTGTLVNALIYHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK T+G++VVAK
Sbjct: 131 ---------DTLSGIGGVR-RPGIVHRLDKDTTGVMVVAK 160
>gi|374709384|ref|ZP_09713818.1| pseudouridine synthase [Sporolactobacillus inulinus CASD]
Length = 307
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 97/159 (61%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D W+S ++ SR R+Q I++G + +NG V K S+ ++ D V + E +PL
Sbjct: 16 RIDRWLSGKLASESRNRIQQLIKNGDIRVNGSQV-KTSYKLRFNDQVLIHLPEPEPLNVS 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IPLDIV+ED +V+VVNKP MVVHPAPG+ +GTLVN +L HC
Sbjct: 75 PEQIPLDIVFEDGSVIVVNKPRGMVVHPAPGHMSGTLVNALLGHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+D+ TSGLL+VAK
Sbjct: 120 -RDL-------SGINGI-LRPGIVHRIDRETSGLLMVAK 149
>gi|389815966|ref|ZP_10207203.1| RNA pseudouridine synthase ylyB [Planococcus antarcticus DSM 14505]
gi|388465460|gb|EIM07777.1| RNA pseudouridine synthase ylyB [Planococcus antarcticus DSM 14505]
Length = 303
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 26/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + AG+ R+D +SS + SR+++ + ++ G V +NG ++ K ++ V+ D++ T
Sbjct: 7 EITEEMAGE-RVDKAVSSIDEDWSRSQIANWVKEGAVKVNG-IIVKPNYKVRLQDIIIVT 64
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
EL+ L ED+ L+IVYED++VLVVNKP MVVHPAPG+A GTLVNG++HHC+
Sbjct: 65 PPELEELDVVPEDLNLEIVYEDEDVLVVNKPKGMVVHPAPGHADGTLVNGLMHHCT---- 120
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ------------DL-------SGINGV-VRPGIVHRIDKDTSGLLMVAK 149
>gi|260583810|ref|ZP_05851558.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
elegans ATCC 700633]
gi|260158436|gb|EEW93504.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
elegans ATCC 700633]
Length = 301
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 32/174 (18%)
Query: 64 VDTKAGKLRLDAWISSRIDGI-------SRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++ K +L L S R+D I +R+ +Q ++SG VS+NG+VV K ++ K GD
Sbjct: 1 MENKIIELTLSLEKSERLDKILTKELSHTRSVIQQWLKSGFVSVNGEVV-KANYKAKDGD 59
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
V I E + L AE+IPL+IV+ED+++LV+NKP+ MVVHP+ G++TGTLVN +L+H
Sbjct: 60 HVTIQIEEEEELTVLAENIPLEIVFEDEHLLVINKPSGMVVHPSKGHSTGTLVNALLYHV 119
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S RPGIVHR+DK TSGLLVVAK
Sbjct: 120 D------------------------QLSKGSESYRPGIVHRIDKDTSGLLVVAK 149
>gi|260101276|ref|ZP_05751513.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
helveticus DSM 20075]
gi|260084917|gb|EEW69037.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
helveticus DSM 20075]
Length = 306
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+ + G RLD +IS +I +SR RV+ ++ + +N +V KVS+ ++ GD +
Sbjct: 7 KYELQVENEYG--RLDKFISEQIPDLSRTRVKELVKEKEILVNHKV-EKVSYKIQAGDKI 63
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ ++PL E+IPLDIVYED+ V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 64 EINVPAVKPLDVVPENIPLDIVYEDEVVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT-- 121
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ + S G RPGIVHR+DK TSGLL++AK
Sbjct: 122 --------------------QDLAQSPEG--FRPGIVHRIDKDTSGLLMIAK 151
>gi|423612107|ref|ZP_17587968.1| RluA family pseudouridine synthase [Bacillus cereus VD107]
gi|401247114|gb|EJR53458.1| RluA family pseudouridine synthase [Bacillus cereus VD107]
Length = 302
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAGINSEWSRSQVQQWIKDAVVTVNGKAV-KGNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMSLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|153940691|ref|YP_001390824.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
Langeland]
gi|384461876|ref|YP_005674471.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
230613]
gi|152936587|gb|ABS42085.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
Langeland]
gi|295318893|gb|ADF99270.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
230613]
Length = 305
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 103/173 (59%), Gaps = 29/173 (16%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+Q+E+ D +RLD ++S + SR+ +Q I G V +N + K ++ +K GD
Sbjct: 6 LQVEKEFDN----VRLDLYLSKIFEDKSRSYLQGIIDEGNVLVNNKE-KKRNYKLKVGDN 60
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ I E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTLVN +LHHC
Sbjct: 61 IEVNIPEPKLLQIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTLVNALLHHC- 119
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSG+LVVAK
Sbjct: 120 ---------------KDL-------SGINGVA-RPGIVHRIDKDTSGILVVAK 149
>gi|347534401|ref|YP_004841071.1| RNA pseudouridine synthase ylyB [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504457|gb|AEN99139.1| Uncharacterized RNA pseudouridine synthase ylyB [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 306
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 87/159 (54%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD IS I ISR+ I+ V +NG+ K + VK GD + + Q L E
Sbjct: 14 RLDKSISETISDISRSHANELIKQNFVKVNGES-QKAKYKVKKGDEITVEVPAPQKLDLE 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+I LDI+YED +VLVVNKP MVVHPAPG+ TLVN +L+H +LP +
Sbjct: 73 PENIKLDIIYEDKDVLVVNKPQGMVVHPAPGHPNHTLVNALLYHTNLPNI---------- 122
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ RPGIVHR+DK TSGLL+VAK
Sbjct: 123 ---------------NGTFRPGIVHRIDKDTSGLLMVAK 146
>gi|30021981|ref|NP_833612.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|229129170|ref|ZP_04258143.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-Cer4]
gi|296504387|ref|YP_003666087.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
gi|423585698|ref|ZP_17561785.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
gi|423649754|ref|ZP_17625324.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
gi|29897537|gb|AAP10813.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|228654407|gb|EEL10272.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-Cer4]
gi|296325439|gb|ADH08367.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
gi|401233044|gb|EJR39540.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
gi|401283034|gb|EJR88931.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
Length = 302
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVAAEQKNERIDKFVAGINNEWSRTQVQQWIKDNVVTVNGKAV-KGNYKVKEEDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|332638853|ref|ZP_08417716.1| pseudouridine synthase [Weissella cibaria KACC 11862]
Length = 304
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 98/170 (57%), Gaps = 26/170 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
EET+ RLD ++ D +R +V I G++++NG V K ++VK D +
Sbjct: 3 EETLVITDQTGRLDKVVADAFDDYTRTQVTGWINDGILTVNG-AVKKAKYSVKPNDEIKF 61
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
T+ E + + EDIPLDIVYEDD++LVVNKP MVVHPA G+ +GTLVN ++ H L
Sbjct: 62 TVPEAVEIDLQPEDIPLDIVYEDDDLLVVNKPQGMVVHPALGHESGTLVNALMFHTPL-- 119
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 ----------------------STINGV-VRPGIVHRIDKDTSGLLMVAK 146
>gi|148379448|ref|YP_001253989.1| pseudouridine synthase [Clostridium botulinum A str. ATCC 3502]
gi|153934249|ref|YP_001383827.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
ATCC 19397]
gi|153935171|ref|YP_001387377.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
Hall]
gi|387817752|ref|YP_005678097.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum H04402 065]
gi|148288932|emb|CAL83019.1| putative ribosomal large subunit pseudouridine synthase
[Clostridium botulinum A str. ATCC 3502]
gi|152930293|gb|ABS35793.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
ATCC 19397]
gi|152931085|gb|ABS36584.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
Hall]
gi|322805794|emb|CBZ03359.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum H04402 065]
Length = 305
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 103/173 (59%), Gaps = 29/173 (16%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+Q+E+ D +RLD ++S + SR+ +Q I G V +N + K ++ +K GD
Sbjct: 6 LQVEKEFDN----VRLDLYLSKIFEDKSRSYLQGIIDEGNVLVNNKE-KKRNYKLKVGDN 60
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ I E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTLVN +LHHC
Sbjct: 61 IEVNIPEPKLLQIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTLVNALLHHC- 119
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSG+LVVAK
Sbjct: 120 ---------------KDL-------SGINGVA-RPGIVHRIDKDTSGILVVAK 149
>gi|431796026|ref|YP_007222930.1| RluA family pseudouridine synthase [Echinicola vietnamensis DSM
17526]
gi|430786791|gb|AGA76920.1| pseudouridine synthase, RluA family [Echinicola vietnamensis DSM
17526]
Length = 364
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 104/175 (59%), Gaps = 29/175 (16%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
L VD R+D +++ ++ ++R +VQ +I +G V ING +K ++ +K GD++
Sbjct: 38 HLRIAVDKGQAATRVDKFLTDKVANVTRNKVQQAIDNGQVKINGSN-TKANYKIKPGDVI 96
Query: 119 NCTISELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ E++P E E + LDIV+EDD++LVVNKPA MVVHPA GN TGTLVNG+++H
Sbjct: 97 TVVL-EMEPRETEVLPEKLDLDIVHEDDHLLVVNKPAGMVVHPAYGNWTGTLVNGLVYHF 155
Query: 177 S-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S LP + G S RPG+VHR+DK TSGLLV+AK
Sbjct: 156 SQLP------------------------EMPGNSGRPGLVHRIDKDTSGLLVIAK 186
>gi|161507611|ref|YP_001577565.1| pseudouridine synthase [Lactobacillus helveticus DPC 4571]
gi|160348600|gb|ABX27274.1| pseudouridine synthase [Lactobacillus helveticus DPC 4571]
Length = 303
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+ + G RLD +IS +I +SR RV+ ++ + +N +V KVS+ ++ GD +
Sbjct: 4 KYELQVENEYG--RLDKFISEQIPDLSRTRVKELVKEKEILVNHKV-EKVSYKIQAGDKI 60
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ ++PL E+IPLDIVYED+ V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 61 EINVPAVKPLDVVPENIPLDIVYEDEVVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT-- 118
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ + S G RPGIVHR+DK TSGLL++AK
Sbjct: 119 --------------------QDLAQSPEG--FRPGIVHRIDKDTSGLLMIAK 148
>gi|297544813|ref|YP_003677115.1| RluA family pseudouridine synthase [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842588|gb|ADH61104.1| pseudouridine synthase, RluA family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 305
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 98/161 (60%), Gaps = 30/161 (18%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++ +D +R+ ++ I GL +NG+ V K S+ VK D V I E + +
Sbjct: 19 RIDVFLAAELD-YTRSYIKKLIVDGLAFVNGKTV-KPSYKVKENDKVVVNIPEAEKIDVL 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YEDD+++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
++SG + +RPGIVHRLDK TSG++VVAK
Sbjct: 122 -----------KNLSGINGILRPGIVHRLDKDTSGVMVVAK 151
>gi|421766135|ref|ZP_16202913.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
garvieae DCC43]
gi|407625505|gb|EKF52209.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
garvieae DCC43]
Length = 302
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D LRLD +++ D +SR+ + +R G VS++G+ K + VK G+ V +
Sbjct: 6 IDEANAGLRLDKALANLSD-VSRSVLTELVREGKVSVDGET-KKAKYKVKAGESVTYELP 63
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E++ L +AEDIPLDIVYED +V V+NKP MVVHP+ G+A+GTLVN I++H
Sbjct: 64 EVEVLDIQAEDIPLDIVYEDADVAVINKPQGMVVHPSAGHASGTLVNAIMYHI------- 116
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 117 ---------QDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAK 146
>gi|289766191|ref|ZP_06525569.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
D11]
gi|289717746|gb|EFD81758.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
D11]
Length = 328
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V++K +RLD ++S +I+ +R+ ++ I + V IN ++++K +K G+ +
Sbjct: 7 KFEFEVNSKYEGMRLDKYLSEQIEEATRSYLEKLIDNNYVKINSKIINKNGRKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN +L++ +
Sbjct: 67 EVLIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNALLYYTNN 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 127 L-----------------------SSING-NIRPGIIHRLDKDTSGLILVAK 154
>gi|315917437|ref|ZP_07913677.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
gonidiaformans ATCC 25563]
gi|313691312|gb|EFS28147.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
gonidiaformans ATCC 25563]
Length = 318
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 98/159 (61%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ ++ +R+ ++ I G V N +V++K +KG +++ I E + +
Sbjct: 20 RLDLFLKEQLPEATRSYLEKLITEGYVLCNEKVITKNGRKLKGKEVIQLAIPEEEKMEIV 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED +LVVNK A+MVVHPA GN +GTLVN +L++C
Sbjct: 80 AENIPLDIVYEDKYLLVVNKQANMVVHPALGNYSGTLVNALLYYCK-------------- 125
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E++SD ++G IRPGIVHRLDK T+GL++VAK
Sbjct: 126 -ENLSD-------MNGV-IRPGIVHRLDKDTTGLIIVAK 155
>gi|150016471|ref|YP_001308725.1| RluA family pseudouridine synthase [Clostridium beijerinckii NCIMB
8052]
gi|149902936|gb|ABR33769.1| pseudouridine synthase, RluA family [Clostridium beijerinckii NCIMB
8052]
Length = 305
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD K R+D +++ SR+ +Q I + +N + K ++ ++ D + T S
Sbjct: 8 VDEKDRGERIDKYLAEIFVDKSRSFIQGLIEKDDIKVNNKT-PKSNYKLRALDEIEVTFS 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + LR EAE+IP++I+YED +V+VVNKP MVVHPAPGN GTLVN +L+HC
Sbjct: 67 EPEVLRVEAEEIPINILYEDKDVVVVNKPQGMVVHPAPGNYNGTLVNALLYHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 120 ---------KDL-------SSINGI-IRPGIVHRIDKDTSGVLVVAK 149
>gi|210622438|ref|ZP_03293170.1| hypothetical protein CLOHIR_01118 [Clostridium hiranonis DSM 13275]
gi|210154254|gb|EEA85260.1| hypothetical protein CLOHIR_01118 [Clostridium hiranonis DSM 13275]
Length = 309
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR+ +Q I+ V++NG+V K + VK D + I + + L
Sbjct: 22 RLDVYLADQFVDMSRSYIQKIIKDKKVTVNGKV-EKAKYLVKEEDKIVIEIPKPKVLEVV 80
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP++IVYEDD++++VNKP MVVHPAPGN GTLVN IL+HC N
Sbjct: 81 PQDIPIEIVYEDDDIIIVNKPQGMVVHPAPGNYEGTLVNAILYHC------KGN------ 128
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G IRPGIVHR+DK TSG+L++AK
Sbjct: 129 ----------LSSINGV-IRPGIVHRIDKDTSGILMIAK 156
>gi|443327970|ref|ZP_21056575.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
gi|442792379|gb|ELS01861.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
Length = 322
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K RLD W++S++ ISR+R+Q I G V +NG+V +++ GD + TI
Sbjct: 20 LEVKTQSDRLDRWLASQLTDISRSRIQKLIEDGHVILNGKVCGSKKNSLTNGDRLKITIP 79
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
L AE+IPLD++YED+ ++++NKP +VVHPAPG+ GTLVN +L+HC
Sbjct: 80 APTKLDLIAENIPLDVLYEDEELIIINKPPGLVVHPAPGHPNGTLVNALLYHC------- 132
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ + I G RPGIVHRLDK T+G +VVAK
Sbjct: 133 ----------------QNLAGIGGVE-RPGIVHRLDKDTTGAIVVAK 162
>gi|430004492|emb|CCF20287.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Rhizobium sp.]
Length = 328
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 92/160 (57%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLDAW+++ ++G SR+R+++ I G VS+ G V ++ + GD V + E +
Sbjct: 11 RLDAWLTTALEGEFSRSRIKALIEQGAVSLKGTVCTEPKRKIAPGDAVEIVLPEPEDAEP 70
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EDIPLD++YED +V+V+ KP +VVHP GN TGTLVN ++HHC
Sbjct: 71 RGEDIPLDVLYEDADVIVILKPPGLVVHPGAGNWTGTLVNALIHHCG------------- 117
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I G RPGIVHRLDK TSG+LV AK
Sbjct: 118 ---------ESLSGIGGVR-RPGIVHRLDKDTSGVLVAAK 147
>gi|52141596|ref|YP_085233.1| pseudouridylate synthase [Bacillus cereus E33L]
gi|228987037|ref|ZP_04147162.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229157471|ref|ZP_04285548.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 4342]
gi|51975065|gb|AAU16615.1| pseudouridylate synthase (pseudouridine synthase) [Bacillus cereus
E33L]
gi|228625921|gb|EEK82671.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 4342]
gi|228772631|gb|EEM21072.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 302
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|304393319|ref|ZP_07375247.1| ribosomal large subunit pseudouridine synthase D [Ahrensia sp.
R2A130]
gi|303294326|gb|EFL88698.1| ribosomal large subunit pseudouridine synthase D [Ahrensia sp.
R2A130]
Length = 365
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 98/160 (61%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D +IS+ D +SRARVQ+ +R G V+ING++ S + GD+V + +
Sbjct: 48 RVDKFISANAPDDLSRARVQALVRQGNVTINGELPRGTSTKISNGDVVRFLMPPPEDAIP 107
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ E+IPLDI++EDD+++V+ KPA MVVHPAPGN +GTLVN +LHHC
Sbjct: 108 QPENIPLDILHEDDDLIVLIKPAGMVVHPAPGNWSGTLVNALLHHC-------------- 153
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ + S G RPGIVHRLDK TSG++VVAK
Sbjct: 154 ---------DGNLSGIGGVKRPGIVHRLDKDTSGVMVVAK 184
>gi|75764813|ref|ZP_00744194.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|74487697|gb|EAO51532.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 192
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ + SR++VQ I+ +V++NG+ V KV++ VK D + TI + + L +
Sbjct: 17 RIDKFVAGINNEWSRSQVQQWIKDDVVTVNGKAV-KVNYKVKEEDEITVTIPDPEALDIQ 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 76 PEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT-------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 --DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|347525390|ref|YP_004832138.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
ruminis ATCC 27782]
gi|345284349|gb|AEN78202.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
ruminis ATCC 27782]
Length = 301
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 98/170 (57%), Gaps = 28/170 (16%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E V+ + G RLD S SR++++ I G +++NG+ K + VK GD++
Sbjct: 3 ETVVEMQNG--RLDKACSEIFSDYSRSQIKQLIDGGNITVNGKT-EKAKYKVKSGDVIRL 59
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
E + L E+IPLDIVYEDD+V+V+NKP MVVHPAPG+ TLVN +L+HC L
Sbjct: 60 EEPETKTLELRPENIPLDIVYEDDDVIVINKPQGMVVHPAPGHDEHTLVNALLYHCPL-- 117
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 118 ----------------------STING-TFRPGIVHRIDKDTSGLLMVAK 144
>gi|218233909|ref|YP_002368692.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|229152090|ref|ZP_04280285.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1550]
gi|218161866|gb|ACK61858.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|228631439|gb|EEK88073.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1550]
Length = 302
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVAAEQKNERIDKFVTGINNEWSRTQVQQWIKDEVVTVNGKAV-KGNYKVKEEDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|451981165|ref|ZP_21929539.1| 23S rRNA pseudouridine synthase [Nitrospina gracilis 3/211]
gi|451761602|emb|CCQ90792.1| 23S rRNA pseudouridine synthase [Nitrospina gracilis 3/211]
Length = 301
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
E +D+ RLD +++ ISR+ ++ I S V +NG + +K ++ VK GD V
Sbjct: 3 HFEYDIDSPCASKRLDVFLTEVQADISRSYIKKLIDSHRVKVNGSI-AKSNYKVKTGDCV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ + +PL E I LDIV+ED +++VVNKPA MVVHPAPG++TGTLV+ +LHHC
Sbjct: 62 ELTVPDPEPLDVRPEAISLDIVHEDASLIVVNKPAGMVVHPAPGHSTGTLVHALLHHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I G RPGIVHRLDK TSGL++VAK
Sbjct: 120 --------------KDL-------SGIGGVE-RPGIVHRLDKDTSGLVLVAK 149
>gi|228960110|ref|ZP_04121774.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229047577|ref|ZP_04193167.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH676]
gi|229111362|ref|ZP_04240915.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-15]
gi|423628987|ref|ZP_17604736.1| RluA family pseudouridine synthase [Bacillus cereus VD154]
gi|423641029|ref|ZP_17616647.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
gi|423656753|ref|ZP_17632052.1| RluA family pseudouridine synthase [Bacillus cereus VD200]
gi|228672138|gb|EEL27429.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-15]
gi|228723824|gb|EEL75179.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH676]
gi|228799626|gb|EEM46579.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|401268532|gb|EJR74580.1| RluA family pseudouridine synthase [Bacillus cereus VD154]
gi|401280090|gb|EJR86012.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
gi|401290494|gb|EJR96188.1| RluA family pseudouridine synthase [Bacillus cereus VD200]
Length = 302
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVAAEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVKEEDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|206971264|ref|ZP_03232215.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH1134]
gi|228954169|ref|ZP_04116197.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229071392|ref|ZP_04204614.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
F65185]
gi|229081145|ref|ZP_04213655.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-2]
gi|229180168|ref|ZP_04307512.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
172560W]
gi|229192062|ref|ZP_04319031.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 10876]
gi|365159330|ref|ZP_09355511.1| RluA family pseudouridine synthase [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412304|ref|ZP_17389424.1| RluA family pseudouridine synthase [Bacillus cereus BAG3O-2]
gi|423426027|ref|ZP_17403058.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-2]
gi|423431911|ref|ZP_17408915.1| RluA family pseudouridine synthase [Bacillus cereus BAG4O-1]
gi|423437345|ref|ZP_17414326.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
gi|423503431|ref|ZP_17480023.1| RluA family pseudouridine synthase [Bacillus cereus HD73]
gi|449090834|ref|YP_007423275.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|206734036|gb|EDZ51207.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH1134]
gi|228591388|gb|EEK49238.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 10876]
gi|228603377|gb|EEK60854.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
172560W]
gi|228702189|gb|EEL54665.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-2]
gi|228711683|gb|EEL63636.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
F65185]
gi|228805489|gb|EEM52080.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|363625328|gb|EHL76369.1| RluA family pseudouridine synthase [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104372|gb|EJQ12349.1| RluA family pseudouridine synthase [Bacillus cereus BAG3O-2]
gi|401110774|gb|EJQ18673.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-2]
gi|401116667|gb|EJQ24505.1| RluA family pseudouridine synthase [Bacillus cereus BAG4O-1]
gi|401120500|gb|EJQ28296.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
gi|402459652|gb|EJV91389.1| RluA family pseudouridine synthase [Bacillus cereus HD73]
gi|449024591|gb|AGE79754.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 302
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVAAEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVKEEDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|197301721|ref|ZP_03166791.1| hypothetical protein RUMLAC_00447 [Ruminococcus lactaris ATCC
29176]
gi|197299161|gb|EDY33691.1| pseudouridine synthase, RluA family [Ruminococcus lactaris ATCC
29176]
Length = 304
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ K G+ R+D ++ +D +SR+ +Q ++ GL+ +NG+ V K ++ + GD ++ +
Sbjct: 7 ISKKKGE-RIDKFLGENLDDLSRSYIQKLLKDGLILVNGKKV-KANYKLNEGDQIDVEVP 64
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ +PL AE+IPLDI+YED+++L+VNKP MVVHP+PG+ TLVN IL+HC
Sbjct: 65 DPEPLDIAAENIPLDILYEDEDILIVNKPKGMVVHPSPGHPDHTLVNAILYHCG------ 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I+G IRPGIVHR+D T+G L++ K
Sbjct: 119 ----------------EHLSGINGV-IRPGIVHRIDMNTTGSLLICK 148
>gi|114707402|ref|ZP_01440299.1| Prenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine
synthase:Pseudouridine synthase, Rlu:Pseudouridine
[Fulvimarina pelagi HTCC2506]
gi|114537283|gb|EAU40410.1| Prenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine
synthase:Pseudouridine synthase, Rlu:Pseudouridine
[Fulvimarina pelagi HTCC2506]
Length = 339
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 101/171 (59%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRID-GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E TV+ + +R+DA+++ R +SRAR+QS IR+G V++ G + VK G+ V
Sbjct: 5 EYTVEAEEAGMRIDAFLAGRCSPELSRARIQSLIRAGDVTVGGVDTAAAKRRVKEGEAVA 64
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E EDIPL IV+ED +++VV+KPA +VVHP PGN +GTLVN +LH+C
Sbjct: 65 LRVPAPAEPEPEPEDIPLTIVFEDADLVVVDKPAGLVVHPGPGNWSGTLVNALLHYCG-- 122
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
EE S I+G RPGIVHRLDK TSGLLV+AK
Sbjct: 123 -------------------EEL-SGINGVK-RPGIVHRLDKDTSGLLVIAK 152
>gi|433463302|ref|ZP_20420861.1| pseudouridine synthase [Halobacillus sp. BAB-2008]
gi|432187812|gb|ELK45069.1| pseudouridine synthase [Halobacillus sp. BAB-2008]
Length = 303
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 101/159 (63%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++ I+ SR+++Q ++ G+V ++ Q V K ++ V+ G+++ I E +P+
Sbjct: 15 RIDKLLAELIEDASRSQIQGWLKDGVVKVDDQPV-KSNYKVQEGNVITWYIPEPEPMDIL 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPLD+VYED++V+VVNKP+ MV+HP+ G+ +GTLVN +LHHC
Sbjct: 74 PEDIPLDVVYEDEDVIVVNKPSGMVIHPSAGHYSGTLVNALLHHC--------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 119 -----DD---LSGINGVE-RPGIVHRIDKDTSGLLMVAK 148
>gi|390443530|ref|ZP_10231320.1| RluA family pseudouridine synthase [Nitritalea halalkaliphila LW7]
gi|389666411|gb|EIM77860.1| RluA family pseudouridine synthase [Nitritalea halalkaliphila LW7]
Length = 349
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 100/172 (58%), Gaps = 31/172 (18%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD R+D +++ ++ +R++VQ +I SG V +NGQ +K ++ +K D + +
Sbjct: 27 VDKGQQPTRIDRFLTDKVANATRSKVQQAIDSGQVLVNGQP-TKANYKIKPEDHIQVLLE 85
Query: 124 ELQPLR---AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLP 179
E P R EDIPLDIV+ED+ +LVVNKPA MVVHPA GN +GTLVN ++HH LP
Sbjct: 86 E--PPRDSTVYPEDIPLDIVFEDETLLVVNKPAGMVVHPAHGNWSGTLVNALVHHFQQLP 143
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKV 231
TL G S RPG+VHR+DK TSGLLV+AK
Sbjct: 144 TLP------------------------GNSGRPGLVHRIDKDTSGLLVIAKT 171
>gi|418033307|ref|ZP_12671784.1| hypothetical protein BSSC8_27280 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351469455|gb|EHA29631.1| hypothetical protein BSSC8_27280 [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 303
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCI- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|350265859|ref|YP_004877166.1| RluA family pseudouridine synthase [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349598746|gb|AEP86534.1| pseudouridine synthase, RluA family protein [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 303
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGNPV-KSNYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|229146464|ref|ZP_04274835.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST24]
gi|228637097|gb|EEK93556.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST24]
Length = 302
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVVAEQKNERIDKFVAGINNEWSRTQVQQWIKDNVVTVNGKAV-KGNYKVKEEDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|265984699|ref|ZP_06097434.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306840039|ref|ZP_07472826.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
gi|264663291|gb|EEZ33552.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306404853|gb|EFM61145.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
Length = 334
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E D+ A RLD W+++ + +SR+RVQS I G V+I+G + ++ G +
Sbjct: 3 ELIADSDAAGKRLDQWLAAALGPELSRSRVQSLIADGHVTIDGAPARETKQKLREGMNIA 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 IVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
>gi|62290527|ref|YP_222320.1| ribosomal large subunit pseudouridine synthase D [Brucella abortus
bv. 1 str. 9-941]
gi|82700443|ref|YP_415017.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
biovar Abortus 2308]
gi|148558837|ref|YP_001259509.1| ribosomal large subunit pseudouridine synthase D [Brucella ovis
ATCC 25840]
gi|189024749|ref|YP_001935517.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Brucella abortus S19]
gi|260547225|ref|ZP_05822963.1| ribosomal large subunit pseudouridine synthase [Brucella abortus
NCTC 8038]
gi|260568746|ref|ZP_05839214.1| ribosomal large subunit pseudouridine synthase [Brucella suis bv. 4
str. 40]
gi|260755356|ref|ZP_05867704.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260758578|ref|ZP_05870926.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260762410|ref|ZP_05874747.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260884372|ref|ZP_05895986.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|261214623|ref|ZP_05928904.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|261315976|ref|ZP_05955173.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261325700|ref|ZP_05964897.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261750812|ref|ZP_05994521.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
gi|261754066|ref|ZP_05997775.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
gi|376272620|ref|YP_005151198.1| pseudouridine synthase [Brucella abortus A13334]
gi|376275741|ref|YP_005116180.1| pseudouridine synthase [Brucella canis HSK A52141]
gi|62196659|gb|AAX74959.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella abortus bv. 1 str. 9-941]
gi|82616544|emb|CAJ11622.1| Prenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine
synthase:Pseudouridine synthase, Rlu:Pseudouridine
synthase [Brucella melitensis biovar Abortus 2308]
gi|148370094|gb|ABQ60073.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella ovis ATCC 25840]
gi|189020321|gb|ACD73043.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella abortus S19]
gi|260095590|gb|EEW79468.1| ribosomal large subunit pseudouridine synthase [Brucella abortus
NCTC 8038]
gi|260154130|gb|EEW89212.1| ribosomal large subunit pseudouridine synthase [Brucella suis bv. 4
str. 40]
gi|260668896|gb|EEX55836.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260672836|gb|EEX59657.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260675464|gb|EEX62285.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260873900|gb|EEX80969.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|260916230|gb|EEX83091.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|261301680|gb|EEY05177.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261305002|gb|EEY08499.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261740565|gb|EEY28491.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
gi|261743819|gb|EEY31745.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
gi|363400226|gb|AEW17196.1| pseudouridine synthase [Brucella abortus A13334]
gi|363404308|gb|AEW14603.1| pseudouridine synthase [Brucella canis HSK A52141]
Length = 334
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E D+ A RLD W+++ + +SR+RVQS I G V+I+G + ++ G +
Sbjct: 3 ELIADSDAAGKRLDQWLAAALGPELSRSRVQSLIADGHVTIDGAPARETKQKLREGMNIA 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 IVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
>gi|376002440|ref|ZP_09780273.1| 23S rRNA pseudouridine synthase [Arthrospira sp. PCC 8005]
gi|375329180|emb|CCE16026.1| 23S rRNA pseudouridine synthase [Arthrospira sp. PCC 8005]
Length = 308
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD W+S R+D +SR+R+Q+ I SG V +N + V+ GD + I PL +
Sbjct: 16 RLDKWLSERVDQLSRSRLQALISSGHVWVNNSPCTSKKATVQIGDRIQVEIPPAIPLELK 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A +IPLDI+YED+ +L++NKPA +VVHPAPG+ TLVN +L HC
Sbjct: 76 ATNIPLDILYEDEELLIINKPAGLVVHPAPGHENDTLVNALLAHC--------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + I G RPGIVHRLDK T+G + +AK
Sbjct: 121 --------ETLAGIGGVQ-RPGIVHRLDKDTTGAIAIAK 150
>gi|145343527|ref|XP_001416372.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576597|gb|ABO94665.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 332
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 105/164 (64%), Gaps = 5/164 (3%)
Query: 72 RLDAWISSRID--GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
RLDA++++ + SR RV ++I++ +V++NG+ SK S +K GD++ + +
Sbjct: 2 RLDAYVAANVPDASASRGRVAAAIKARMVTLNGKTASKPSRALKPGDVIEGELERERASE 61
Query: 130 AEAED-IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA--SSNQ 186
A+ E + LDIV+ED++VLVVNK A MV HP+ G+ +GTLVN +L HC LP L + NQ
Sbjct: 62 AKPEPWVKLDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVPTGNQ 121
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D ED D + IRPGIVHRLDKGTSG++VVAK
Sbjct: 122 ALSDDDEDDEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAK 165
>gi|406990235|gb|EKE09914.1| hypothetical protein ACD_16C00100G0076 [uncultured bacterium]
Length = 326
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 93/159 (58%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + +SR R+Q I++G V ING ++ V+ VK G + I +
Sbjct: 23 RLDKFLAIKAQDLSRTRLQDLIQTGFVQINGVAMNDVALKVKEGQKIQINIPPVVEAAPV 82
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+ IPLDI YED++++V+NKPA +VVHPAPGN GTLVN +L+HC
Sbjct: 83 PQKIPLDIFYEDEDLIVLNKPAGLVVHPAPGNPEGTLVNALLNHCG-------------- 128
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I+G RPGIVHRLDK TSGL+VVAK
Sbjct: 129 --------ESLSGINGVK-RPGIVHRLDKDTSGLMVVAK 158
>gi|354595229|ref|ZP_09013265.1| RluA family pseudouridine synthase [Commensalibacter intestini
A911]
gi|353671521|gb|EHD13224.1| RluA family pseudouridine synthase [Commensalibacter intestini
A911]
Length = 329
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 96/169 (56%), Gaps = 27/169 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + +RLD +++ + SR+R++S I GL N +V S +VK GD + I
Sbjct: 16 VDQENNNIRLDRFLAQTCNDYSRSRIKSLIEQGLCQRNHLIVRDPSTSVKEGDHIELQIP 75
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC--SLPTL 181
+ +P EA++I LDI+YED+ ++V+NK A +VVHPAPGN GTLVN +L HC LP +
Sbjct: 76 KAKPYILEAQEIALDILYEDEVLIVINKSAGLVVHPAPGNEDGTLVNALLAHCGDQLPGI 135
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK TSG++VVAK
Sbjct: 136 -------------------------GGEKRPGIVHRLDKDTSGIIVVAK 159
>gi|306844672|ref|ZP_07477257.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
gi|306274844|gb|EFM56614.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
Length = 334
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E D+ A RLD W+++ + +SR+RVQS I G V+I+G + ++ G +
Sbjct: 3 ELIADSDAAGKRLDQWLAAALGPELSRSRVQSLIADGHVTIDGAPARETKQKLREGMNIA 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 IVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
>gi|451819459|ref|YP_007455660.1| pseudouridine synthase, RluA family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785438|gb|AGF56406.1| pseudouridine synthase, RluA family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 303
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
VD R+D ++S SR+ +Q I + +NG++ K ++ +K D + T
Sbjct: 7 VVDESDKGARIDKYLSEIFVDKSRSFIQGLIEKDGIEVNGKI-PKSNYKLKTFDKIEVTF 65
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
SE + L EAEDIPL+I+YED +++VVNK MVVHPAPGN GTLVN +L+HC+
Sbjct: 66 SEPEVLNVEAEDIPLNILYEDADIVVVNKEQGMVVHPAPGNYNGTLVNALLYHCT----- 120
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ SSI+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 121 -----------DL-------SSINGI-IRPGIVHRIDKDTSGVLVVAK 149
>gi|228922645|ref|ZP_04085945.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|423582102|ref|ZP_17558213.1| RluA family pseudouridine synthase [Bacillus cereus VD014]
gi|423635337|ref|ZP_17610990.1| RluA family pseudouridine synthase [Bacillus cereus VD156]
gi|228837074|gb|EEM82415.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|401212981|gb|EJR19722.1| RluA family pseudouridine synthase [Bacillus cereus VD014]
gi|401278088|gb|EJR84024.1| RluA family pseudouridine synthase [Bacillus cereus VD156]
Length = 302
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVAAEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVKEEDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGI-MRPGIVHRIDKDTSGLLMVAK 150
>gi|296331122|ref|ZP_06873596.1| pseudouridylate synthase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674277|ref|YP_003865949.1| pseudouridylate synthase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296151766|gb|EFG92641.1| pseudouridylate synthase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412521|gb|ADM37640.1| pseudouridylate synthase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 303
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSPV-KSNYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|443632785|ref|ZP_21116964.1| pseudouridylate synthase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347608|gb|ELS61666.1| pseudouridylate synthase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 303
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSPV-KSNYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|16331032|ref|NP_441760.1| hypothetical protein slr1629 [Synechocystis sp. PCC 6803]
gi|383322775|ref|YP_005383628.1| hypothetical protein SYNGTI_1866 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325944|ref|YP_005386797.1| hypothetical protein SYNPCCP_1865 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491828|ref|YP_005409504.1| hypothetical protein SYNPCCN_1865 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437095|ref|YP_005651819.1| hypothetical protein SYNGTS_1866 [Synechocystis sp. PCC 6803]
gi|451815190|ref|YP_007451642.1| hypothetical protein MYO_118830 [Synechocystis sp. PCC 6803]
gi|3915482|sp|P74346.1|Y1629_SYNY3 RecName: Full=Uncharacterized RNA pseudouridine synthase slr1629;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|1653527|dbj|BAA18440.1| slr1629 [Synechocystis sp. PCC 6803]
gi|339274127|dbj|BAK50614.1| hypothetical protein SYNGTS_1866 [Synechocystis sp. PCC 6803]
gi|359272094|dbj|BAL29613.1| hypothetical protein SYNGTI_1866 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275264|dbj|BAL32782.1| hypothetical protein SYNPCCN_1865 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278434|dbj|BAL35951.1| hypothetical protein SYNPCCP_1865 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407961601|dbj|BAM54841.1| hypothetical protein BEST7613_5910 [Bacillus subtilis BEST7613]
gi|451781159|gb|AGF52128.1| hypothetical protein MYO_118830 [Synechocystis sp. PCC 6803]
Length = 327
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 93/160 (58%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD W++ ++ +SR+R Q I SG V NG V + +K GD + I EL PL
Sbjct: 32 VRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDKNLILKTGDRLVVNIPELIPLDV 91
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
A++IPLDI+YED+ ++++NKPA +VVHP PG+ GT+VN +L HC P LA
Sbjct: 92 VAQNIPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHC--PDLAG------- 142
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +VVAK
Sbjct: 143 ---------------IGGVQRPGIVHRLDKDTTGAMVVAK 167
>gi|402555984|ref|YP_006597255.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
FRI-35]
gi|401797194|gb|AFQ11053.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
FRI-35]
Length = 302
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDDIVTVNGKAV-KGNYKVRENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|338730392|ref|YP_004659784.1| ribosomal large subunit pseudouridine synthase D [Thermotoga
thermarum DSM 5069]
gi|335364743|gb|AEH50688.1| ribosomal large subunit pseudouridine synthase D [Thermotoga
thermarum DSM 5069]
Length = 306
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 28/174 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRID-GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM- 117
+E V RLD ++ +++ SR+ +Q +I+ G V +N Q V K S+ VK GD+
Sbjct: 1 MEFKVGKSEANQRLDLFLLAKLPVKFSRSYIQKAIKEGKVKVN-QKVQKPSYKVKPGDVI 59
Query: 118 -VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
V EL+P+ E E I LDI+YED +++VVNKPA MVVHP P + TGTLVN +L+HC
Sbjct: 60 FVEEPAVELKPIAVEPEPIHLDILYEDHDIIVVNKPAGMVVHPIPAHMTGTLVNALLYHC 119
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D + I G +RPGIVHRLDK TSG++VVAK
Sbjct: 120 -------------KDLQGI-----------GGELRPGIVHRLDKDTSGVIVVAK 149
>gi|423138224|ref|ZP_17125867.1| RluA family pseudouridine synthase [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371958262|gb|EHO75981.1| RluA family pseudouridine synthase [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 328
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+++ +RLD ++S +I+ +R+ ++ I + V IN ++++K +K G+ +
Sbjct: 7 KFEFEVNSEYEGMRLDKYLSEQIEEATRSYLEKLIDNNYVKINSKIINKNGRKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN +L++ +
Sbjct: 67 EVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNALLYYTNN 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 127 L-----------------------SSING-NIRPGIIHRLDKNTSGLILVAK 154
>gi|65321221|ref|ZP_00394180.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Bacillus
anthracis str. A2012]
gi|229600532|ref|YP_002868128.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|270000606|ref|YP_003329045.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. Ames]
gi|291612221|ref|YP_003541035.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. 'Ames Ancestor']
gi|224552855|gb|ACN55066.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. 'Ames Ancestor']
gi|229264940|gb|ACQ46577.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|269850243|gb|ACZ49983.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Ames]
Length = 302
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVRENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRSMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|319408111|emb|CBI81764.1| ribosomal large subunit pseudouridine synthase D [Bartonella
schoenbuchensis R1]
Length = 340
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 24/176 (13%)
Query: 60 LEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+++ D A R+D W++ + + +SR+R+Q+ IR G + ++GQ++ + ++ +
Sbjct: 2 IQQITDESALGQRIDQWLAKKYHNELSRSRLQTLIREGYLKVDGQLIKEPKTKLQPNQTI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I L+ + E E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 62 ELIIPPLKNVHLEGEAIVLDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIHHCG- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ S I G RPGIVHRLDK TSG++VVAK F+
Sbjct: 121 ---------------------DSLSGIGGVK-RPGIVHRLDKNTSGVMVVAKNDFA 154
>gi|315121810|ref|YP_004062299.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495212|gb|ADR51811.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 340
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D W++ + + SR+ V++ I +G +SING V S V G+ + +LQ L
Sbjct: 24 RIDRWLAINLKEKFSRSYVKTLILNGAISINGVVSINPSRKVVPGESFFIDVPQLQQLNI 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
AE+IPLDI+YEDD+++V+NK A +VVHPAPGN TGTLVN +LHHC+
Sbjct: 84 AAENIPLDILYEDDDIIVINKQAGLVVHPAPGNWTGTLVNALLHHCN------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G RPGIVHRLDK T+G +VVAK
Sbjct: 131 ---------NNLSGINGIK-RPGIVHRLDKDTTGTMVVAK 160
>gi|259046729|ref|ZP_05737130.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
adiacens ATCC 49175]
gi|259036625|gb|EEW37880.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
adiacens ATCC 49175]
Length = 308
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 105/168 (62%), Gaps = 30/168 (17%)
Query: 70 KLRLDAWISSRID-------GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
KL+L+ + R+D G+SR +QS +++GL+S+NG+VV K ++ + GD V
Sbjct: 7 KLKLELEKTQRLDKVLTGELGLSRTTIQSWLKAGLISVNGEVV-KSNYKAQSGDEVTILQ 65
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + + E+IPLDIV+EDD+++VVNKP+ MVVHP+ G+ +GTLVN +L+H
Sbjct: 66 KEEDVITIQPENIPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYH------- 118
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SN + S +E+I RPG+VHR+DK TSGLLV+AK
Sbjct: 119 -SNSLSDSTSEEI--------------YRPGLVHRIDKDTSGLLVIAK 151
>gi|217961313|ref|YP_002339881.1| RluA family ribosomal large subunit pseudouridine synthase
[Bacillus cereus AH187]
gi|222097338|ref|YP_002531395.1| ribosomal large subunit pseudouridine synthase, rlud subfamily
[Bacillus cereus Q1]
gi|229140541|ref|ZP_04269096.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST26]
gi|375285818|ref|YP_005106257.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
NC7401]
gi|423353596|ref|ZP_17331223.1| RluA family pseudouridine synthase [Bacillus cereus IS075]
gi|423567211|ref|ZP_17543458.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A12]
gi|217063169|gb|ACJ77419.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH187]
gi|221241396|gb|ACM14106.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus Q1]
gi|228643102|gb|EEK99378.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST26]
gi|358354345|dbj|BAL19517.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
NC7401]
gi|401089409|gb|EJP97580.1| RluA family pseudouridine synthase [Bacillus cereus IS075]
gi|401214299|gb|EJR21029.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A12]
Length = 302
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDNVVTVNGKAV-KGNYKVRENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|223939777|ref|ZP_03631648.1| pseudouridine synthase, RluA family [bacterium Ellin514]
gi|223891553|gb|EEF58043.1| pseudouridine synthase, RluA family [bacterium Ellin514]
Length = 318
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 93/168 (55%), Gaps = 24/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV+ RLD ++ R +SR +Q I G + +NGQ + K +H+ + G+++
Sbjct: 10 TVEVSLPSERLDTFLRERFPAVSRGTIQRLIEQGHIKVNGQTI-KPTHHPRAGELIEVYW 68
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +P A EDIPLDI++ED ++LV+NK +VVHPA G+ TLVN +LHHC
Sbjct: 69 PEARPAEARPEDIPLDIIFEDSDLLVLNKAPGLVVHPAAGHEEHTLVNALLHHC------ 122
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I G + RPGIVHRLDK TSG LVVAK
Sbjct: 123 ----------------EGQLSGIGGVA-RPGIVHRLDKETSGCLVVAK 153
>gi|49475182|ref|YP_033223.1| ribosomal large subunit pseudouridine synthase D [Bartonella
henselae str. Houston-1]
gi|49237987|emb|CAF27192.1| Ribosomal large subunit pseudouridine synthase D [Bartonella
henselae str. Houston-1]
Length = 334
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+ D A RLD W++ + + SR+R+Q+ IR G + ++GQ++ + +K ++
Sbjct: 4 QRITDENALGQRLDQWLAKQYHNVLSRSRLQALIREGYLKVDGQLIKEPKTKLKSNQIIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
T+ L+ E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 64 LTMPALRDAEPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIHHCG-- 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 122 --------------------KSLSGIGGVK-RPGIVHRLDKNTSGVMVVAK 151
>gi|206976765|ref|ZP_03237669.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus H3081.97]
gi|423374310|ref|ZP_17351648.1| RluA family pseudouridine synthase [Bacillus cereus AND1407]
gi|206745075|gb|EDZ56478.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus H3081.97]
gi|401094222|gb|EJQ02304.1| RluA family pseudouridine synthase [Bacillus cereus AND1407]
Length = 302
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDNVVTVNGKAV-KGNYKVRENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|336400257|ref|ZP_08581042.1| hypothetical protein HMPREF0404_00333 [Fusobacterium sp. 21_1A]
gi|336162907|gb|EGN65851.1| hypothetical protein HMPREF0404_00333 [Fusobacterium sp. 21_1A]
Length = 328
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+++ +RLD ++S +I+ +R+ ++ I + V IN ++++K +K G+ +
Sbjct: 7 KFEFEVNSEYEGMRLDKYLSEQIEEATRSYLEKLIDNNYVKINSKIINKNGRKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN +L++ +
Sbjct: 67 EVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNALLYYTNN 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 127 L-----------------------SSING-NIRPGIIHRLDKDTSGLILVAK 154
>gi|332707717|ref|ZP_08427744.1| ribosomal large subunit pseudouridine synthase D [Moorea producens
3L]
gi|332353420|gb|EGJ32933.1| ribosomal large subunit pseudouridine synthase D [Moorea producens
3L]
Length = 320
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 101/175 (57%), Gaps = 26/175 (14%)
Query: 58 VQLEETVDTKAGK--LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
+Q++ET + RLD++I+ + +SR+R+Q I G V +N V V+ G
Sbjct: 10 LQVQETSKSTGSTPSYRLDSYIAQQTPDLSRSRIQKLIEQGNVQVNDHVCISKKAKVQLG 69
Query: 116 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
D ++ TI + +PL + E IPLDI+YEDD ++++NKPA +VVHPAPG+ +GTLVN +L H
Sbjct: 70 DRISLTIPDPKPLELQPEVIPLDILYEDDVLIIINKPAGLVVHPAPGHESGTLVNALLAH 129
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
C P L + I G RPGIVHRLDK T+G + +AK
Sbjct: 130 C--PKL---------------------TGIGGVQ-RPGIVHRLDKDTTGAIAIAK 160
>gi|428211292|ref|YP_007084436.1| ribosomal large subunit pseudouridine synthase D [Oscillatoria
acuminata PCC 6304]
gi|427999673|gb|AFY80516.1| ribosomal large subunit pseudouridine synthase D [Oscillatoria
acuminata PCC 6304]
Length = 311
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 92/159 (57%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++S + +SR+R+Q I V +NGQV + V+ GD + I +PL
Sbjct: 17 RLDRYLASHLQDLSRSRIQQLISQNCVKVNGQVCTSKKMMVETGDRLCIEIPPAEPLEIG 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A +IPLDI+YEDD ++++NKPA +VVHPAPG++ TLVN +L HC
Sbjct: 77 ATEIPLDILYEDDCLIIINKPAGLVVHPAPGHSDDTLVNALLAHC--------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I G RPGIVHRLDK TSG +VVAK
Sbjct: 122 --------ENLSGIGGVQ-RPGIVHRLDKDTSGAIVVAK 151
>gi|336419601|ref|ZP_08599859.1| ribosomal large subunit pseudouridine synthase, RluA family
[Fusobacterium sp. 11_3_2]
gi|336163475|gb|EGN66399.1| ribosomal large subunit pseudouridine synthase, RluA family
[Fusobacterium sp. 11_3_2]
Length = 314
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+++ +RLD ++S +I+ +R+ ++ I + V IN ++++K +K G+ +
Sbjct: 7 KFEFEVNSEYEGMRLDKYLSEQIEEATRSYLEKLIDNNYVKINSKIINKNGRKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN +L++ +
Sbjct: 67 EVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNALLYYTNN 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGIVHRLDK TSGL++VAK
Sbjct: 127 L-----------------------SSING-NIRPGIVHRLDKDTSGLILVAK 154
>gi|78186656|ref|YP_374699.1| pseudouridine synthase RluD [Chlorobium luteolum DSM 273]
gi|78166558|gb|ABB23656.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
luteolum DSM 273]
Length = 354
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ +R +VQ +I G V +NG+ V K ++ VK D + T L+P
Sbjct: 38 MRIDQYLTRQVENATRNKVQEAIEDGRVLVNGKSV-KSNYRVKSCDSIEMTF--LRPPAP 94
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+DIVYED +++VVNK MVVHPA GN TGTL N ILHH
Sbjct: 95 ELAPEDIPIDIVYEDSDLMVVNKAPGMVVHPAFGNWTGTLANAILHHFG----------- 143
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+DAE++ DE +RPGIVHRLDK TSGL++VA+
Sbjct: 144 -TDAEELETDE----------LRPGIVHRLDKDTSGLIIVAR 174
>gi|326803607|ref|YP_004321425.1| putative ribosomal large subunit pseudouridine synthase D
[Aerococcus urinae ACS-120-V-Col10a]
gi|326650706|gb|AEA00889.1| putative ribosomal large subunit pseudouridine synthase D
[Aerococcus urinae ACS-120-V-Col10a]
Length = 315
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 92/160 (57%), Gaps = 21/160 (13%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LRLD ++S R+D SR+ + I++G V +N QVV K S+ + D ++ I E Q L
Sbjct: 14 LRLDRYLSQRLDSYSRSEIAQWIKTGQVKVNKQVV-KPSYRLNPMDKISLAIEEEQKLPI 72
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E E + LDIVYED ++LV+NK MVVHP+ G+ +GTLVN +L A N S
Sbjct: 73 EGESLDLDIVYEDKDLLVINKAKGMVVHPSKGHLSGTLVNALL------AYAQKNHFTLS 126
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D G RPGIVHRLDK TSGL+VVAK
Sbjct: 127 DL--------------GDYYRPGIVHRLDKDTSGLMVVAK 152
>gi|160880488|ref|YP_001559456.1| RluA family pseudouridine synthase [Clostridium phytofermentans
ISDg]
gi|160429154|gb|ABX42717.1| pseudouridine synthase, RluA family [Clostridium phytofermentans
ISDg]
Length = 313
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 104/167 (62%), Gaps = 24/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D++ R+D++++ +GISR+ +Q I+ LV ING V+ K ++ +K GD++ +
Sbjct: 9 IDSEYEDERIDSFLAEFEEGISRSYIQKLIKDSLVKINGNVI-KANYRLKEGDILTYEVP 67
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ L AE+IPLDI+YED++++V+NKP +VVHPA G+ +GTLVN +L+HC
Sbjct: 68 QPVSLEIAAENIPLDILYEDEDIIVINKPKGLVVHPAAGHYSGTLVNALLYHC------- 120
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ S I+G +RPGIVHR+D T+G+LVV K
Sbjct: 121 ---------------KDRLSGINGV-MRPGIVHRIDMNTTGVLVVCK 151
>gi|13473214|ref|NP_104781.1| pseudouridine synthase [Mesorhizobium loti MAFF303099]
gi|14023962|dbj|BAB50567.1| pseudouridine synthase [Mesorhizobium loti MAFF303099]
Length = 329
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 96/168 (57%), Gaps = 24/168 (14%)
Query: 64 VDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
V A RLD W+++ + +SR+RVQ IR G VS++G+ + + G+ V+ +
Sbjct: 4 VGADAAGQRLDQWLAASLGPDMSRSRVQMLIRQGAVSVDGKPADETKRKMSAGESVSIAM 63
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +P + E I LD++YEDD ++V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 64 PEPEPAAPQGEAIALDVLYEDDALIVINKPAGLVVHPGAGNWTGTLVNALIHHCG----- 118
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 119 -----------------DSLSGIGGVR-RPGIVHRLDKETSGVMVVAK 148
>gi|121601705|ref|YP_988611.1| RluA family pseudouridine synthase [Bartonella bacilliformis KC583]
gi|421760423|ref|ZP_16197240.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
gi|120613882|gb|ABM44483.1| pseudouridine synthase, RluA family [Bartonella bacilliformis
KC583]
gi|411175707|gb|EKS45732.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
Length = 336
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 97/171 (56%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
++ D A R+D W++ +SR+R+Q+ IR G + I+G++V++ +K +
Sbjct: 3 QQITDEDALGQRIDQWLAKHYQNELSRSRLQTLIREGYLKIDGKLVTEPKTKIKSNQTIE 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
TI L E E IPL I++EDD+++VVNKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 LTIPTLNNAYPEGEAIPLHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGVR-RPGIVHRLDKNTSGVIVVAK 150
>gi|237745359|ref|ZP_04575840.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
7_1]
gi|229432588|gb|EEO42800.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
7_1]
Length = 314
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+++ +RLD ++S +I+ +R+ ++ I + V IN ++++K +K G+ +
Sbjct: 7 KFEFEVNSEYKGMRLDKYLSEQIEEATRSYLEKLIDNNYVKINSKIINKNGRKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN +L++ +
Sbjct: 67 EVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNALLYYTNN 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 127 L-----------------------SSING-NIRPGIIHRLDKDTSGLILVAK 154
>gi|124024982|ref|YP_001014098.1| pseudouridylate synthase specific to ribosomal large subunit
[Prochlorococcus marinus str. NATL1A]
gi|123960050|gb|ABM74833.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. NATL1A]
Length = 326
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 98/174 (56%), Gaps = 28/174 (16%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L E K +RLD W+ S+ SRA VQ I +G +NG+ K V+ GD++
Sbjct: 15 ELFEGKYKKPLPMRLDRWLVSQRAEQSRAHVQKFIEAGFARVNGKT-GKAKTPVRPGDII 73
Query: 119 NCTISELQPL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC- 176
+ +PL + E+I LDI+YEDD+++V+NK A M VHPAPGN +GTLVNG++HHC
Sbjct: 74 QLWVPPPEPLPYLKPEEIDLDILYEDDHLIVINKTAGMAVHPAPGNKSGTLVNGLIHHCP 133
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LP + G +RPGIVHRLDK T+G +VVAK
Sbjct: 134 DLPGI-------------------------GGKLRPGIVHRLDKDTTGCIVVAK 162
>gi|423604480|ref|ZP_17580373.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
gi|401245100|gb|EJR51458.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
Length = 302
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVRENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|260495646|ref|ZP_05815770.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_33]
gi|260196829|gb|EEW94352.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_33]
Length = 328
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 105/172 (61%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+++ +RLD ++S +I+ +R+ ++ I + V IN ++++K +K G+ +
Sbjct: 7 KFEFEVNSEYEGMRLDKYLSEQIEEATRSYLEKLIDNNYVKINSKIINKNGRKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN +L++ +
Sbjct: 67 EVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNALLYYTNN 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 127 L-----------------------SSING-NIRPGIIHRLDKDTSGLILVAK 154
>gi|119492077|ref|ZP_01623530.1| Pseudouridine synthase, RluD [Lyngbya sp. PCC 8106]
gi|119453287|gb|EAW34452.1| Pseudouridine synthase, RluD [Lyngbya sp. PCC 8106]
Length = 319
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 95/163 (58%), Gaps = 24/163 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD W+S ++ +SR+R+Q+ I G V++N +V +K GD + I +PL E
Sbjct: 25 RLDRWLSESLETLSRSRIQTLISQGHVTVNQKVCVSKKLTLKRGDHIEVKIPPNEPLELE 84
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A DIPLDI+YED++++++NK A +VVHP+ G+ TLVN +L HC TLA
Sbjct: 85 AVDIPLDILYEDEHLIIINKQAGLVVHPSAGHVNDTLVNALLAHCD--TLA--------- 133
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
I G RPGIVHRLDK T+G +VVAK FS
Sbjct: 134 ------------GIGGVE-RPGIVHRLDKDTTGAIVVAKTDFS 163
>gi|222149596|ref|YP_002550553.1| ribosomal large subunit pseudouridine synthase RluD subfamily
[Agrobacterium vitis S4]
gi|221736578|gb|ACM37541.1| ribosomal large subunit pseudouridine synthase RluD subfamily
[Agrobacterium vitis S4]
Length = 342
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 24/176 (13%)
Query: 56 AGVQLEETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKG 114
AG +E + + + RLDAW+++ + G +SR RV++ I G V +NG V++ +K
Sbjct: 8 AGEPRKELIAGEDAEGRLDAWLAASLGGDLSRNRVKALIEQGAVFVNGTAVTEPKRKIKP 67
Query: 115 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 174
GD + + E + + EDIPL ++YED +++V++KPA +VVHP GN TGTLVN ++H
Sbjct: 68 GDQLVIAMPEPEDPEPKGEDIPLTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIH 127
Query: 175 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
HC + S I G RPGIVHRLDK TSG++VVAK
Sbjct: 128 HCG----------------------DSLSGIGGVK-RPGIVHRLDKETSGVMVVAK 160
>gi|428216631|ref|YP_007101096.1| ribosomal large subunit pseudouridine synthase D [Pseudanabaena sp.
PCC 7367]
gi|427988413|gb|AFY68668.1| ribosomal large subunit pseudouridine synthase D [Pseudanabaena sp.
PCC 7367]
Length = 316
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 95/164 (57%), Gaps = 24/164 (14%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD+++++ + SR+R+Q I G+V N Q + VK GD + I EL+ L
Sbjct: 28 VRLDSYLATCLTEFSRSRIQKLIEQGMVQQNQQTCTSKKAIVKDGDYLTIEIPELERLTI 87
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E + I LDI+YED+++L +NKP MVVHPAPG++ GTLVN +L HC
Sbjct: 88 EPQAIDLDILYEDEHLLAINKPVGMVVHPAPGHSEGTLVNALLAHC-------------- 133
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ S I+G RPGIVHRLDK TSG +VVAK F+
Sbjct: 134 ---------QHLSGINGVQ-RPGIVHRLDKDTSGAIVVAKNDFA 167
>gi|238854437|ref|ZP_04644777.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 269-3]
gi|260664477|ref|ZP_05865329.1| pseudouridylate synthase [Lactobacillus jensenii SJ-7A-US]
gi|313472076|ref|ZP_07812568.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 1153]
gi|238832930|gb|EEQ25227.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 269-3]
gi|239530107|gb|EEQ69108.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 1153]
gi|260561542|gb|EEX27514.1| pseudouridylate synthase [Lactobacillus jensenii SJ-7A-US]
Length = 301
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 101/171 (59%), Gaps = 28/171 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E V KAG RLD +IS D +SR+RVQ + SG + +N + K S+ V GD ++
Sbjct: 4 FELNVSAKAG--RLDKYISEHSD-LSRSRVQELLTSGDILVNSKQ-EKPSYKVAIGDKIS 59
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ +L PL E EDIPLDIVYED++V+VVNKP MVVHP+ G+ TLVN +++H
Sbjct: 60 VHVPKLVPLNVEPEDIPLDIVYEDNDVIVVNKPQGMVVHPSAGHPNHTLVNALMNHT--- 116
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+E ++S G RPGIVHR+DK TSGLL++AK
Sbjct: 117 -------------------KELAASPEG--FRPGIVHRIDKDTSGLLMIAK 146
>gi|398304126|ref|ZP_10507712.1| pseudouridylate synthase [Bacillus vallismortis DV1-F-3]
Length = 303
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G + +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQIVVNGSPV-KSNYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|294781868|ref|ZP_06747200.1| ribosomal large subunit pseudouridine synthase, RluA family
[Fusobacterium sp. 1_1_41FAA]
gi|294481679|gb|EFG29448.1| ribosomal large subunit pseudouridine synthase, RluA family
[Fusobacterium sp. 1_1_41FAA]
Length = 318
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 101/164 (61%), Gaps = 24/164 (14%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD +++ +I+ +R+ ++ I + V IN +V++K +K G+ + +I E + +
Sbjct: 19 MRLDKYLAEQIEEATRSYLEKLIDNSYVKINSKVINKNGRKLKSGEKIEISIPEEENIDI 78
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EAE+IPLDIV+E+D+ ++VNK +MVVHPA GN GTLVN +L++ + L+S N
Sbjct: 79 EAENIPLDIVFENDDFILVNKKYNMVVHPAYGNYNGTLVNALLYYTN--NLSSVN----- 131
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+IRPGI+HRLDK TSGL++VAK F+
Sbjct: 132 -----------------GNIRPGIIHRLDKDTSGLILVAKNNFA 158
>gi|220909998|ref|YP_002485309.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7425]
gi|219866609|gb|ACL46948.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7425]
Length = 313
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 30/168 (17%)
Query: 66 TKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL 125
T AG RLD ++++++ +SR+R+Q I G V +NGQ+ V+ GD + +
Sbjct: 5 TTAGNERLDRYLAAQLPDLSRSRIQQLIEQGQVYVNGQLCQAKKQIVQVGDRIQLELPP- 63
Query: 126 QPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLA 182
P+ AE E IPLDI+YEDD +L+VNKPA +VVHPAPG++ GTLVN +L HC LP +
Sbjct: 64 -PVAAEPLPEHIPLDILYEDDQLLIVNKPAGLVVHPAPGHSGGTLVNALLAHCGDLPGI- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK TSG + +AK
Sbjct: 122 ------------------------GGVQRPGIVHRLDKDTSGAIAIAK 145
>gi|229198004|ref|ZP_04324718.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1293]
gi|423574501|ref|ZP_17550620.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
gi|228585483|gb|EEK43587.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1293]
gi|401212026|gb|EJR18772.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
Length = 302
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVRENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|42782985|ref|NP_980232.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 10987]
gi|49186742|ref|YP_029994.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|118479113|ref|YP_896264.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|165872288|ref|ZP_02216925.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167636442|ref|ZP_02394741.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|167641146|ref|ZP_02399401.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|170688858|ref|ZP_02880061.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|170708814|ref|ZP_02899250.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|177654900|ref|ZP_02936617.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190565878|ref|ZP_03018797.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|196035788|ref|ZP_03103190.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
gi|196045901|ref|ZP_03113130.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|218905022|ref|YP_002452856.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|225865874|ref|YP_002751252.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|228916530|ref|ZP_04080096.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228928941|ref|ZP_04091973.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228935208|ref|ZP_04098034.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228947612|ref|ZP_04109902.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229092938|ref|ZP_04224071.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-42]
gi|229123406|ref|ZP_04252610.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
95/8201]
gi|229186133|ref|ZP_04313302.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BGSC 6E1]
gi|254683398|ref|ZP_05147258.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. CNEVA-9066]
gi|254735932|ref|ZP_05193638.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Western North America USA6153]
gi|254739820|ref|ZP_05197513.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Kruger B]
gi|254751010|ref|ZP_05203049.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Vollum]
gi|301055383|ref|YP_003793594.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|376267789|ref|YP_005120501.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
F837/76]
gi|384181707|ref|YP_005567469.1| 23S rRNA pseudouridine synthase D [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|386737715|ref|YP_006210896.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. H9401]
gi|421507433|ref|ZP_15954353.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. UR-1]
gi|421639648|ref|ZP_16080239.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. BF1]
gi|423550359|ref|ZP_17526686.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
gi|42738912|gb|AAS42840.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus ATCC 10987]
gi|49180669|gb|AAT56045.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|118418338|gb|ABK86757.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|164711964|gb|EDR17504.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167510926|gb|EDR86317.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|167528184|gb|EDR90971.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|170126299|gb|EDS95190.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|170667213|gb|EDT17973.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|172080411|gb|EDT65498.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190562797|gb|EDV16763.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|195991437|gb|EDX55403.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
gi|196023341|gb|EDX62019.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|218538740|gb|ACK91138.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|225786554|gb|ACO26771.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|228597309|gb|EEK54960.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BGSC 6E1]
gi|228660182|gb|EEL15818.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
95/8201]
gi|228690442|gb|EEL44226.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-42]
gi|228812132|gb|EEM58463.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824373|gb|EEM70179.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228830748|gb|EEM76353.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228843109|gb|EEM88191.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|300377552|gb|ADK06456.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|324327791|gb|ADY23051.1| 23S rRNA pseudouridine synthase D [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|364513589|gb|AEW56988.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
F837/76]
gi|384387567|gb|AFH85228.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. H9401]
gi|401189975|gb|EJQ97025.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
gi|401822567|gb|EJT21717.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. UR-1]
gi|403393313|gb|EJY90558.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. BF1]
Length = 302
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVRENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|409993260|ref|ZP_11276408.1| RluA family pseudouridine synthase [Arthrospira platensis str.
Paraca]
gi|291568935|dbj|BAI91207.1| probable pseudouridine synthase [Arthrospira platensis NIES-39]
gi|409935884|gb|EKN77400.1| RluA family pseudouridine synthase [Arthrospira platensis str.
Paraca]
Length = 308
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD W+S R+ +SR+R+Q+ I SG V +N + V+ GD + I PL +
Sbjct: 16 RLDRWLSERVQQLSRSRLQALISSGHVWVNNSPCTSKKATVQIGDRIQVEIPPAIPLELK 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A +IPLDI+YED+ +L++NKPA +VVHPAPG+A TLVN +L HC
Sbjct: 76 ATNIPLDILYEDEELLIINKPAGLVVHPAPGHANDTLVNALLAHC--------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + I G RPGIVHRLDK T+G + +AK
Sbjct: 121 --------ETLAGIGGVQ-RPGIVHRLDKDTTGAIAIAK 150
>gi|329769635|ref|ZP_08261039.1| hypothetical protein HMPREF0433_00803 [Gemella sanguinis M325]
gi|328838390|gb|EGF87999.1| hypothetical protein HMPREF0433_00803 [Gemella sanguinis M325]
Length = 299
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++ + + +SR +Q+ I G + ++G V K ++ +K +++ E + L
Sbjct: 15 RIDKFLQNELSDLSRTNIQNLISEGYIKVDGNTV-KTNYKLKESNVITIDYKEPEELDVV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYED+++L+VNKP MVVHP+ G+ GTLVN +L+HC L
Sbjct: 74 KQDIPVDIVYEDNDLLIVNKPKGMVVHPSAGHKDGTLVNALLYHCEL------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGIVHR+DK TSGLL+VAK
Sbjct: 121 -----------SSING-TIRPGIVHRIDKDTSGLLIVAK 147
>gi|323339837|ref|ZP_08080106.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
gi|417974093|ref|ZP_12614917.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
gi|323092710|gb|EFZ35313.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
gi|346329548|gb|EGX97843.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
Length = 301
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 28/170 (16%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E V+ + G RLD S SR++++ + G +++NG+ K + VK GD++
Sbjct: 3 ETVVEMQNG--RLDKVCSEIFSDYSRSQIKQLLDGGNITVNGKT-EKAKYKVKSGDVIRL 59
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
E + L E+IPLDIVYEDD+V+V+NKP MVVHPAPG+ TLVN +L+HC L
Sbjct: 60 EEPETKTLELRPENIPLDIVYEDDDVIVINKPQGMVVHPAPGHDEHTLVNALLYHCPL-- 117
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 118 ----------------------STING-TFRPGIVHRIDKDTSGLLMVAK 144
>gi|196038675|ref|ZP_03105983.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
gi|196030398|gb|EDX68997.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
Length = 302
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVRENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|395792031|ref|ZP_10471470.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423714079|ref|ZP_17688338.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421226|gb|EJF87482.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432950|gb|EJF98924.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 332
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
++ D A RLD W++ + + +SR+R+Q+ IR G + ++GQ++ + +K ++
Sbjct: 4 QQITDEDALGQRLDQWLAKQYHNALSRSRLQTLIREGYLKVDGQLIREPKTKLKPNQIIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
T+ L+ E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 64 LTMPVLRDAEPRGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIHHCG-- 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK TSG++VVAK
Sbjct: 122 ---------------------NSLSGIGGVKRPGIVHRLDKNTSGVMVVAK 151
>gi|311068067|ref|YP_003972990.1| pseudouridylate synthase [Bacillus atrophaeus 1942]
gi|419823952|ref|ZP_14347485.1| pseudouridylate synthase [Bacillus atrophaeus C89]
gi|310868584|gb|ADP32059.1| pseudouridylate synthase [Bacillus atrophaeus 1942]
gi|388471989|gb|EIM08779.1| pseudouridylate synthase [Bacillus atrophaeus C89]
Length = 303
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 101/172 (58%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E T + R+D +++S SR +VQ ++ G + +NG V K ++ ++ GD V
Sbjct: 3 QFEITALPEQKSERIDKFLASAEKDWSRTQVQQWVKDGHIEVNGSPV-KANYKMQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC
Sbjct: 62 KVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHVTGTLVNGLMAHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|404371419|ref|ZP_10976724.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
gi|226912453|gb|EEH97654.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
Length = 305
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D ++S+ I+G SR+ +Q I SG + +N + V K ++ ++ D + ++ E L
Sbjct: 16 IRIDKYLSNIIEGKSRSFIQGLIDSGAILVNNKEV-KSNYKLRNHDEIIVSMPEPIELDV 74
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E EDI L+IVYED++V+V+NKP +VVHPAPGN +GTLVNG+L+HC
Sbjct: 75 EPEDIDLNIVYEDEDVIVLNKPQGVVVHPAPGNYSGTLVNGLLYHC-------------- 120
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK TSG+LV+AK
Sbjct: 121 --KDL-------SGINGV-IRPGIVHRIDKDTSGILVIAK 150
>gi|395782121|ref|ZP_10462526.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
gi|395419611|gb|EJF85909.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
Length = 332
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD W++ + + SR+R+Q IR G + I+GQ + + +K ++ + +L+ +
Sbjct: 15 RLDQWLAKQYRNVLSRSRLQILIREGYLKIDGQFIKEAKTKLKPNQIIELIMPDLRNAKP 74
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
AEDI LDI++EDD+V+V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 75 SAEDIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCG------------- 121
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK TSG++VVAK
Sbjct: 122 ----------NSLSGIGGVKRPGIVHRLDKNTSGVMVVAK 151
>gi|254757932|ref|ZP_05209959.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Australia 94]
Length = 249
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVRENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|389575752|ref|ZP_10165780.1| pseudouridine synthase, RluA family [Eubacterium cellulosolvens 6]
gi|389311237|gb|EIM56170.1| pseudouridine synthase, RluA family [Eubacterium cellulosolvens 6]
Length = 311
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 104/172 (60%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L TV+T+ R+DA+++S+ID +SR+ +Q ++ G V +NG+ V K ++ V D +
Sbjct: 3 KLTFTVETEDEDTRVDAYLASQIDRMSRSYIQKILKQGGVLVNGKAV-KPNYKVCEDDRI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L EAEDIPLDI+YEDD+VL+VNKP MVVHPA G+ TLVN +L HC
Sbjct: 62 EIEIPENEELDIEAEDIPLDILYEDDDVLIVNKPKDMVVHPAAGHYEHTLVNALLFHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G +RPGIVHR+DK T+G LV+ K
Sbjct: 120 --------------------RDRLSGINGV-MRPGIVHRIDKDTTGALVICK 150
>gi|414175172|ref|ZP_11429576.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410889001|gb|EKS36804.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 335
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 97/170 (57%), Gaps = 23/170 (13%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E TV+ G RLD ++ R +SR+R+++ I +G VS+ V +++VK GD +
Sbjct: 11 EVTVEGDEGSQRLDRVLAVRSPDLSRSRLKALILAGQVSVGPAPVRDPAYHVKAGDTITI 70
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
+ P E EDIPLDIV+EDD+++V++KP ++VVHPA G+ TGTLVN ++ HC
Sbjct: 71 DVPPAAPAEPEGEDIPLDIVFEDDDIIVIDKPKNLVVHPAAGHETGTLVNALIAHCG--- 127
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK T+GL+V AK
Sbjct: 128 --------------------ASLSGIGGVRRPGIVHRLDKDTTGLMVAAK 157
>gi|282900595|ref|ZP_06308537.1| Pseudouridine synthase, RluD [Cylindrospermopsis raciborskii
CS-505]
gi|281194395|gb|EFA69350.1| Pseudouridine synthase, RluD [Cylindrospermopsis raciborskii
CS-505]
Length = 326
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 107/194 (55%), Gaps = 30/194 (15%)
Query: 39 CSSSSSGGNNREPIAN-YAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGL 97
C+ G N IAN Y+ + ++ + RLD ++SS I +SR+R+Q I G
Sbjct: 3 CTGCWQNGKN---IANHYSLIVVKIHLSITQKTQRLDRYLSSVIPDLSRSRIQDLIEQGY 59
Query: 98 VSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 157
V +NG+V + + GG+ + I +Q + A+DIPLDI+YED+ +L++NKPA +VV
Sbjct: 60 VQVNGKVCYSKNITLDGGEYLEVEIPPVQAAQLVAQDIPLDILYEDEQLLILNKPAGLVV 119
Query: 158 HPAPGNATGTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 216
HPAPG+ GTLV+ +L HC +LP + G RPGIVH
Sbjct: 120 HPAPGHLEGTLVHALLAHCPNLPGI-------------------------GGVQRPGIVH 154
Query: 217 RLDKGTSGLLVVAK 230
RLDK T+G + +AK
Sbjct: 155 RLDKDTTGAIAIAK 168
>gi|299821727|ref|ZP_07053615.1| ribosomal large subunit pseudouridine synthase [Listeria grayi DSM
20601]
gi|299817392|gb|EFI84628.1| ribosomal large subunit pseudouridine synthase [Listeria grayi DSM
20601]
Length = 302
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E +T+ G +R+D +++ + SR+ VQ ++ G V+++G+VV K ++ + GD+V
Sbjct: 7 EVKETEKG-MRIDKFLAEKASK-SRSSVQQLLKDGQVTVDGEVV-KPNYKCQLGDIVEME 63
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ + EAEDIPLDI YED+++LVVNKP MVVHP+ G+ TGTLVN +L+HC
Sbjct: 64 ERAPEVIEIEAEDIPLDIYYEDEDLLVVNKPEGMVVHPSAGHYTGTLVNALLYHC----- 118
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -----------KDL-------SGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|337748284|ref|YP_004642446.1| hypothetical protein KNP414_04043 [Paenibacillus mucilaginosus
KNP414]
gi|336299473|gb|AEI42576.1| YlyB [Paenibacillus mucilaginosus KNP414]
Length = 329
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 106/174 (60%), Gaps = 28/174 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDG---ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
LE V + R+D +++ ++ +SR ++Q I+ G V+++G++V K ++ + GD
Sbjct: 25 LEWHVGEEEAGERIDKFLAEMLENGLDVSRTQLQQWIKDGHVTVSGRIV-KPNYKLGEGD 83
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ + E Q L AEDIPLD+VYED +V+VVNKP MVVHPAPG+ +GTLVN +L+HC
Sbjct: 84 SLKLVVPEPQELELTAEDIPLDVVYEDSDVIVVNKPRGMVVHPAPGHYSGTLVNALLYHC 143
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+ AK
Sbjct: 144 ----------------KDL-------SGINGI-MRPGIVHRIDKDTSGLLMAAK 173
>gi|289547904|ref|YP_003472892.1| pseudouridine synthase [Thermocrinis albus DSM 14484]
gi|289181521|gb|ADC88765.1| pseudouridine synthase, RluA family [Thermocrinis albus DSM 14484]
Length = 324
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 98/167 (58%), Gaps = 27/167 (16%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
+ +AGK RLD +++ SR+ ++ + G V ++GQVV K S VKGG++V + +
Sbjct: 16 EHQAGK-RLDQFLAEAYPDFSRSYIKELVEGGYVLVDGQVVYKPSRKVKGGEVVVLCVPK 74
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLAS 183
++PL AEDIPL+I+YEDD++ VV KP +VVHP+PG +GTLVN +L LPT+
Sbjct: 75 VEPLSLPAEDIPLEILYEDDDLAVVVKPCGLVVHPSPGYTSGTLVNALLFRWRDLPTV-- 132
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLD+ T G++VVAK
Sbjct: 133 -----------------------GEWYRPGIVHRLDRNTMGVMVVAK 156
>gi|163867809|ref|YP_001609013.1| ribosomal large subunit pseudouridine synthase D [Bartonella
tribocorum CIP 105476]
gi|161017460|emb|CAK01018.1| ribosomal large subunit pseudouridine synthase D [Bartonella
tribocorum CIP 105476]
Length = 334
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 24/172 (13%)
Query: 60 LEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+++ D A RLD W++ + D +SR+R+Q+ IR G + I+GQ + + +K ++
Sbjct: 3 IQKVTDEGALDQRLDQWLAKQYHDVLSRSRLQTLIREGCLKIDGQFIKEPKTKLKPNQII 62
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ L+ AE I LDI+YEDD+V+V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 ELEMPNLRDAEPSAEAIALDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCG- 121
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPG+VHRLDK TSG++VVAK
Sbjct: 122 ----------------------NSLSGIGGVKRPGVVHRLDKNTSGVMVVAK 151
>gi|335996600|ref|ZP_08562517.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis SPM0211]
gi|335351670|gb|EGM53161.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis SPM0211]
Length = 301
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 28/170 (16%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E V+ + G RLD S SR++++ + G +++NG+ K + VK GD++
Sbjct: 3 ETVVEMQNG--RLDKVCSEIFSDYSRSQIKQLLDGGNITVNGKT-EKAKYKVKSGDVIRL 59
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
E + L E+IPLDIVYEDD+V+V+NKP MVVHPAPG+ TLVN +L+HC L
Sbjct: 60 EEPETKTLELRPENIPLDIVYEDDDVIVINKPQGMVVHPAPGHDEHTLVNALLYHCPL-- 117
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 118 ----------------------STING-TFRPGIVHRIDKDTSGLLMVAK 144
>gi|260063592|ref|YP_003196672.1| ribosomal large subunit pseudouridine synthase D [Robiginitalea
biformata HTCC2501]
gi|88783037|gb|EAR14210.1| ribosomal large subunit pseudouridine synthase D [Robiginitalea
biformata HTCC2501]
Length = 343
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 95/170 (55%), Gaps = 29/170 (17%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T DT LR+D ++ +RI +R ++Q + R G + N QV+ K ++ VK GD + +
Sbjct: 22 TADTGQKPLRVDKFLMTRIRNATRNKIQQAARDGNIRANEQVI-KQNYRVKPGDTIRV-L 79
Query: 123 SELQPLR--AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
E P EDIPLDIVYED+ +LVVNKPA MVVHP GN TGTLVN ++HH
Sbjct: 80 FEHPPYENLLLPEDIPLDIVYEDEVLLVVNKPAGMVVHPGHGNYTGTLVNALVHHLDQLP 139
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L S N RPG+VHR+DK TSGLLV+AK
Sbjct: 140 LNSDN-------------------------RPGLVHRIDKETSGLLVIAK 164
>gi|49478436|ref|YP_037954.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49329992|gb|AAT60638.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 302
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR +VQ I+ +V++NG+ V K ++ V+ D + TI
Sbjct: 8 TVAEEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAV-KGNYKVREDDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|340749928|ref|ZP_08686775.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
mortiferum ATCC 9817]
gi|229419571|gb|EEO34618.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
mortiferum ATCC 9817]
Length = 318
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ ID +R+ VQ I +GLV I G+ ++K + +KG +++ I E + L
Sbjct: 19 RIDKFLNELIDDATRSYVQKIIDNGLVEIQGKKITKSGNKLKGTEIIVVNIPEDEVLDLT 78
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPLDI+YED +++V+NK ++VVHPA GN +GTLVN +L+H
Sbjct: 79 PEDIPLDIIYEDSDIVVINKAPNLVVHPAHGNYSGTLVNALLYHI--------------- 123
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHRLDK TSG++VVAK
Sbjct: 124 -KDL-------STINGV-IRPGIVHRLDKDTSGVIVVAK 153
>gi|163782801|ref|ZP_02177797.1| hypothetical protein HG1285_15736 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881922|gb|EDP75430.1| hypothetical protein HG1285_15736 [Hydrogenivirga sp. 128-5-R1-1]
Length = 322
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 25/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
LE TV + RLD +++ +SR+ ++ I G + G+V K S+ VK GD V
Sbjct: 8 LEFTVSEEQAGERLDTFLAKAYPELSRSYIKRLIEEGFALVEGKV-RKPSYRVKEGDRVT 66
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
++ E +PL + EDIP+++VYED +V+V+ KP +VVHP+PG +GTLVN +L+H
Sbjct: 67 LSVPEPEPLEVKPEDIPIEVVYEDRDVVVIVKPCGLVVHPSPGYTSGTLVNALLYHI--- 123
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI G RPGIVHRLDK T+GL+VVAK
Sbjct: 124 -------------KDL-------SSIGGVE-RPGIVHRLDKETAGLMVVAK 153
>gi|304404034|ref|ZP_07385696.1| pseudouridine synthase, RluA family [Paenibacillus curdlanolyticus
YK9]
gi|304347012|gb|EFM12844.1| pseudouridine synthase, RluA family [Paenibacillus curdlanolyticus
YK9]
Length = 324
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 27/173 (15%)
Query: 60 LEETVDTKAGKLRLDAWISSRI--DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
LE V+ RLD +++ +SR ++Q I+SG V +NG +K H ++ GD+
Sbjct: 23 LEWVVEVDEAGERLDKYVTESFADSAVSRTQIQEWIKSGAVLVNG-TEAKAKHRLEAGDV 81
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ + E +P AE IPL+IVYED++V+V+NK +VVHPAPG+ +GT+VN +++HC
Sbjct: 82 ITVEVPEPEPAEIIAEPIPLNIVYEDEDVIVINKQRGLVVHPAPGHHSGTVVNALMYHC- 140
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G SIRPGIVHR+DK TSGLL+ AK
Sbjct: 141 ---------------QDL-------SGING-SIRPGIVHRIDKDTSGLLMAAK 170
>gi|325285479|ref|YP_004261269.1| RluA family pseudouridine synthase [Cellulophaga lytica DSM 7489]
gi|324320933|gb|ADY28398.1| pseudouridine synthase, RluA family [Cellulophaga lytica DSM 7489]
Length = 344
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 99/166 (59%), Gaps = 36/166 (21%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE------ 124
LR+D ++ + I+ +R+++Q + + G + +N V+ K ++ VK GD + S
Sbjct: 29 LRIDKFLMNFIENATRSQIQKAAKDGHIWVNN-VLVKQNYKVKAGDDIRVMFSHPPYEFL 87
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
LQP EDIPLDIVYEDD +LVVNKPA MVVHP GN +GTL+N +LHHC +
Sbjct: 88 LQP-----EDIPLDIVYEDDVLLVVNKPAGMVVHPGHGNYSGTLINALLHHCKV------ 136
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ ++ +S RPG+VHR+DK TSGLLVVAK
Sbjct: 137 ---------DLPNN---------SSDRPGLVHRIDKDTSGLLVVAK 164
>gi|428780052|ref|YP_007171838.1| RluA family pseudouridine synthase [Dactylococcopsis salina PCC
8305]
gi|428694331|gb|AFZ50481.1| pseudouridine synthase, RluA family [Dactylococcopsis salina PCC
8305]
Length = 310
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 94/174 (54%), Gaps = 24/174 (13%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
++ + GK RLD + SR+R+Q I G V +NG + V+ D +
Sbjct: 7 QQVTISATGKQRLDRALVEGFPDFSRSRLQKLIEQGNVQVNGIISKDKKQLVQAKDEIVL 66
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I QPL + E IPLDI+YED+++++VNKPA +VVHPAPGN TGTLVN +L HC
Sbjct: 67 WIPPPQPLDVQPESIPLDILYEDEHLIIVNKPAGLVVHPAPGNETGTLVNALLAHC---- 122
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
E + I G RPGIVHRLDK TSG +VVAK FS
Sbjct: 123 -------------------ENLAGIGGIE-RPGIVHRLDKDTSGAIVVAKNDFS 156
>gi|323702053|ref|ZP_08113721.1| pseudouridine synthase, RluA family [Desulfotomaculum nigrificans
DSM 574]
gi|333923444|ref|YP_004497024.1| RluA family pseudouridine synthase [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532935|gb|EGB22806.1| pseudouridine synthase, RluA family [Desulfotomaculum nigrificans
DSM 574]
gi|333749005|gb|AEF94112.1| pseudouridine synthase, RluA family [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 307
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 100/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + K RLD ++S + +SR+ +Q I G V++N + +K ++ ++ GD V +
Sbjct: 8 VDQENAKSRLDVFLSGQCHDLSRSYIQRLIEEGQVTVN-DLPTKANYKLRVGDRVAVEVP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ L+ E IPLDI YED++V+VVNKP MVVHPA GN +GTLVN +L+HC
Sbjct: 67 PAEELQVVPEPIPLDIYYEDNDVIVVNKPRGMVVHPAEGNTSGTLVNALLYHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHRLDK TSGL++VAK
Sbjct: 120 ---------RDL-------SGINGV-LRPGIVHRLDKDTSGLIMVAK 149
>gi|424896721|ref|ZP_18320295.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393180948|gb|EJC80987.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 341
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 107/182 (58%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLDAW+++++ + SR+R+++ I+ G V + G+ V+
Sbjct: 3 DPFKQAAGNRKVLTADETA-EGRLDAWLTAQVGEEFSRSRIKALIKDGQVFLRGEPVTDP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD T+ E + + EDIPLDI++ED++V+V++KP+ +VVHP GN TGTL
Sbjct: 62 QRKVRNGDSFEITLPEPEDPTPQGEDIPLDILHEDEDVIVISKPSGLVVHPGAGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN +++HC + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIYHCG----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|88802386|ref|ZP_01117913.1| ribosomal large subunit pseudouridine synthase D [Polaribacter
irgensii 23-P]
gi|88781244|gb|EAR12422.1| ribosomal large subunit pseudouridine synthase D [Polaribacter
irgensii 23-P]
Length = 346
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 104/167 (62%), Gaps = 31/167 (18%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LR+D ++ + I+ +R+++Q + ++G V +N ++ K +H VK D+V ++ P +
Sbjct: 29 LRVDKFLMNFIENATRSKLQQAAKAGNVLVN-EISVKSNHKVKPNDVVRIVLA-YPPAES 86
Query: 131 --EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQE 187
AEDIPLDI+YEDD V+VVNKPA MVVHP GN +GTLVNG++HH +LPT +SN+
Sbjct: 87 LLVAEDIPLDIIYEDDTVIVVNKPAGMVVHPGHGNYSGTLVNGLIHHIENLPT--NSNE- 143
Query: 188 AFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
RPG+VHR+DK TSGLLVVAK F+
Sbjct: 144 -----------------------RPGLVHRIDKDTSGLLVVAKTEFA 167
>gi|254478004|ref|ZP_05091388.1| pseudouridine synthase, RluA family [Carboxydibrachium pacificum
DSM 12653]
gi|214036008|gb|EEB76698.1| pseudouridine synthase, RluA family [Carboxydibrachium pacificum
DSM 12653]
Length = 309
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 98/161 (60%), Gaps = 30/161 (18%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++S +D SR+ ++ I GLV +NG+ V K S+ VK D + I E + +
Sbjct: 19 RIDVFLASELD-YSRSYIKKLIEEGLVLVNGKNV-KPSYKVKEDDEIVVNIKEAEKIEVV 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YED++++V+NKP MVVHPA GN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDEDIIVINKPQGMVVHPAAGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
++SG + +RPGIVHRLDK TSG++VVAK
Sbjct: 122 -----------KNLSGINGILRPGIVHRLDKDTSGVMVVAK 151
>gi|429205232|ref|ZP_19196509.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
saerimneri 30a]
gi|428146304|gb|EKW98543.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
saerimneri 30a]
Length = 301
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD + + SR+++Q I + + +NGQV +K + V+ GD+V E+Q L E
Sbjct: 12 RLDKVLPGLLPEYSRSQLQKLIAAENIKVNGQV-TKPKYKVEPGDVVTFDEPEIQTLEVE 70
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI YED++V+VVNKP MVVHPAPG+ TLVN +L+H L
Sbjct: 71 PENIPLDIYYEDEDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHSPL------------- 117
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 118 -----------STING-TYRPGIVHRIDKDTSGLLMVAK 144
>gi|309778048|ref|ZP_07672988.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
gi|308914185|gb|EFP59985.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
Length = 304
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 26/160 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +IS + + +SR+RVQS ++ GL+ +N + +K ++ VK D + + L A
Sbjct: 15 VRIDKYISEQ-EELSRSRVQSLLQEGLILVNEKP-AKANYKVKAQDHITACFDDEMELEA 72
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E + LD+ YED++V+V+NKP ++VVHPA GN TGTLVNG+L+HC
Sbjct: 73 RPEAMELDVRYEDEDVIVINKPKNIVVHPAAGNQTGTLVNGLLYHC-------------- 118
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G ++RPGI+HR+DK T+GLL+VAK
Sbjct: 119 --KDL-------SGING-TLRPGIIHRIDKDTTGLLIVAK 148
>gi|372489157|ref|YP_005028722.1| RluA family pseudouridine synthase [Dechlorosoma suillum PS]
gi|359355710|gb|AEV26881.1| pseudouridine synthase, RluA family [Dechlorosoma suillum PS]
Length = 375
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 28/170 (16%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V AG RLD ++ + SR R+Q+ IR G VS+NGQ V + H + GG+ +N
Sbjct: 28 VPLDAGGRRLDQVLAELLPQYSRNRLQTWIREGRVSLNGQPVQEPKHKLLGGEFLNLEEV 87
Query: 124 ELQPLRAEA-EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L AE EDIP +VYED+ +L++NKPA +VVHP GN +GTL+N +LHH P LA
Sbjct: 88 QDEKLAAETPEDIPFPVVYEDEAILIINKPAGLVVHPGSGNWSGTLLNALLHHT--PQLA 145
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK TSGL+VVAK +
Sbjct: 146 QVP-------------------------RAGIVHRLDKDTSGLMVVAKTL 170
>gi|345017841|ref|YP_004820194.1| RluA family pseudouridine synthase [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033184|gb|AEM78910.1| pseudouridine synthase, RluA family [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 305
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 98/161 (60%), Gaps = 30/161 (18%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++ +D +R+ ++ I LV +NG+ V K S+ VK D V I E + +
Sbjct: 19 RIDVFLAAELD-YTRSYIKKLIVDELVFVNGKTV-KPSYKVKENDEVVVNIPEAEKIDVL 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YEDD+++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
++SG + +RPGIVHRLDK TSG++VVAK
Sbjct: 122 -----------KNLSGINGILRPGIVHRLDKDTSGVMVVAK 151
>gi|256752464|ref|ZP_05493322.1| pseudouridine synthase, RluA family [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748666|gb|EEU61712.1| pseudouridine synthase, RluA family [Thermoanaerobacter ethanolicus
CCSD1]
Length = 305
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 98/161 (60%), Gaps = 30/161 (18%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++ +D +R+ ++ I LV +NG+ V K S+ VK D V I E + +
Sbjct: 19 RIDVFLAAELD-YTRSYIKKLIVDELVFVNGKTV-KPSYKVKENDEVVVNIPEAEKIDVL 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YEDD+++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
++SG + +RPGIVHRLDK TSG++VVAK
Sbjct: 122 -----------KNLSGINGILRPGIVHRLDKDTSGVMVVAK 151
>gi|395790169|ref|ZP_10469663.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
gi|395426820|gb|EJF92938.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
Length = 334
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
++ D A RLD W++ + + SR+R+Q+ IR G + I+GQ++ + +K ++
Sbjct: 4 QQITDEDALGQRLDQWLAKQYHNVLSRSRLQTLIREGYLKIDGQLIKEPKTKLKPNQIIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
TI L+ E I LDI++EDD+V+V+NKPA +VVHP GN +GTLVN +++HC
Sbjct: 64 LTIPVLRDAEPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWSGTLVNALVYHCG-- 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I G RPGIVHRLDK TSG++VVAK
Sbjct: 122 --------------------ESLSGIGGVK-RPGIVHRLDKNTSGVMVVAK 151
>gi|379723203|ref|YP_005315334.1| hypothetical protein PM3016_5487 [Paenibacillus mucilaginosus 3016]
gi|386725924|ref|YP_006192250.1| hypothetical protein B2K_27955 [Paenibacillus mucilaginosus K02]
gi|378571875|gb|AFC32185.1| YlyB [Paenibacillus mucilaginosus 3016]
gi|384093049|gb|AFH64485.1| hypothetical protein B2K_27955 [Paenibacillus mucilaginosus K02]
Length = 329
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 107/174 (61%), Gaps = 28/174 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRI-DG--ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
LE V + R+D +++ + DG +SR ++Q I+ G V+++G++V K ++ + GD
Sbjct: 25 LEWHVGEEEAGERIDKFLAEMLEDGLDVSRTQLQQWIKDGHVTVSGRIV-KPNYKLGEGD 83
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ + E Q L AEDIPLD++YED +V+VVNKP MVVHPAPG+ +GTLVN +L+HC
Sbjct: 84 SLKLVVPEPQELELTAEDIPLDVIYEDSDVIVVNKPRGMVVHPAPGHYSGTLVNALLYHC 143
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+ AK
Sbjct: 144 ----------------KDL-------SGINGI-MRPGIVHRIDKDTSGLLMAAK 173
>gi|227544604|ref|ZP_03974653.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri CF48-3A]
gi|338204549|ref|YP_004650694.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri SD2112]
gi|227185411|gb|EEI65482.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri CF48-3A]
gi|336449789|gb|AEI58404.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri SD2112]
Length = 303
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 99/174 (56%), Gaps = 31/174 (17%)
Query: 59 QLEETVDTKAGKL--RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
+LE T+D G++ R+D + D SR+++Q I G V +NG+ V K + + GD
Sbjct: 4 ELELTID---GEMVGRIDKQLGHHFDQFSRSQIQHWIEDGHVLVNGEQV-KPKYKLLVGD 59
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
V E Q + EDIPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 60 HVQIIPEEPQKIDLTPEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPNHTLVNALLYHS 119
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 120 PL------------------------STING-EFRPGIVHRIDKDTSGLLMVAK 148
>gi|83592447|ref|YP_426199.1| ribosomal large subunit pseudouridine synthase D [Rhodospirillum
rubrum ATCC 11170]
gi|386349164|ref|YP_006047412.1| ribosomal large subunit pseudouridine synthase D [Rhodospirillum
rubrum F11]
gi|83575361|gb|ABC21912.1| ribosomal large subunit pseudouridine synthase D [Rhodospirillum
rubrum ATCC 11170]
gi|346717600|gb|AEO47615.1| ribosomal large subunit pseudouridine synthase D [Rhodospirillum
rubrum F11]
Length = 343
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 102/187 (54%), Gaps = 27/187 (14%)
Query: 53 ANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNV 112
A A + E VD +A RLD W+++ I +SRAR+Q I VS+NGQ + + S V
Sbjct: 18 AAAAPIVYERAVDAEAAGQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRV 77
Query: 113 KGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170
K G V + E P+ A + E I L +VYEDD+++V++K A MVVHP PGN TLVN
Sbjct: 78 KPGQTVR--VEEPPPIAATPQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVN 135
Query: 171 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+L HC P+L S I G RPGIVHRLDK TSGL++ AK
Sbjct: 136 ALLAHCG-PSL---------------------SGIGGER-RPGIVHRLDKDTSGLMIAAK 172
Query: 231 VIFSPFG 237
+ G
Sbjct: 173 TDLAHHG 179
>gi|392948862|ref|ZP_10314462.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
pentosus KCA1]
gi|392435835|gb|EIW13759.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
pentosus KCA1]
Length = 307
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 99/175 (56%), Gaps = 28/175 (16%)
Query: 56 AGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
A + + T+ T+ G RLD ++ +R++V I++ V++NGQ V + VK G
Sbjct: 4 ATTEQQYTITTQQG--RLDKVLAGLQTDWTRSQVDKLIKTAQVTVNGQ-VQPSKYKVKVG 60
Query: 116 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
D + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 61 DQITVAAQTVQATTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPDHTLVNALLYH 120
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 121 SPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAK 150
>gi|169827034|ref|YP_001697192.1| RNA pseudouridine synthase ylyB [Lysinibacillus sphaericus C3-41]
gi|168991522|gb|ACA39062.1| Hypothetical RNA pseudouridine synthase ylyB [Lysinibacillus
sphaericus C3-41]
Length = 303
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 101/168 (60%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T++ + R+D +SS SR ++ + I G + +NG V K + VK GD++ +
Sbjct: 7 TIEEQQQGERIDKALSSLQSEWSRTQIGNWISDGNIKVNGDAV-KAKYKVKAGDVIAIDV 65
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E +PL AE++ LDIVYED +VLVVNKP MVVHPAPG+ TGTLVNG+++ C
Sbjct: 66 PEAEPLDVIAENLALDIVYEDADVLVVNKPKGMVVHPAPGHMTGTLVNGLMYQC------ 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 ----------KDL-------SGINGI-MRPGIVHRIDKDTSGLLMVAK 149
>gi|392426940|ref|YP_006467934.1| ribosomal large subunit pseudouridine synthase D [Desulfosporosinus
acidiphilus SJ4]
gi|391356903|gb|AFM42602.1| ribosomal large subunit pseudouridine synthase D [Desulfosporosinus
acidiphilus SJ4]
Length = 324
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 96/160 (60%), Gaps = 26/160 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LRLD +++ + G SR+ VQ I + +NG + K ++ ++ GD + TI +P A
Sbjct: 36 LRLDVGVTN-VLGKSRSFVQDLIAKECIKVNG-LSKKGNYKIRKGDRIEATIPIPRPAAA 93
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E E+IPLDI+YEDD+VLVVNKP MVVHPAPG TGTLVN +L HC
Sbjct: 94 EPENIPLDILYEDDDVLVVNKPQGMVVHPAPGAWTGTLVNALLFHCR------------- 140
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G +RPGIVHR+DK TSG+LVVAK
Sbjct: 141 ----------NLSGINGV-LRPGIVHRIDKDTSGILVVAK 169
>gi|167040454|ref|YP_001663439.1| RluA family pseudouridine synthase [Thermoanaerobacter sp. X514]
gi|300914505|ref|ZP_07131821.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X561]
gi|307724259|ref|YP_003904010.1| RluA family pseudouridine synthase [Thermoanaerobacter sp. X513]
gi|166854694|gb|ABY93103.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X514]
gi|300889440|gb|EFK84586.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X561]
gi|307581320|gb|ADN54719.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X513]
Length = 305
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 98/161 (60%), Gaps = 30/161 (18%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++ +D +R+ ++ I LV +NG+ V K S+ VK D V I E + +
Sbjct: 19 RIDVFLAAELD-YTRSYIKKLIVDELVFVNGKTV-KPSYKVKENDEVVVNIPEAEKIDVL 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YEDD+++V+NKP MVVHPAPGN +GTLVN +L+HC
Sbjct: 77 PENIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHC--------------- 121
Query: 192 AEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
++SG + +RPGIVHRLDK TSG++VVAK
Sbjct: 122 -----------KNLSGINGILRPGIVHRLDKDTSGVMVVAK 151
>gi|52080148|ref|YP_078939.1| pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646073|ref|ZP_08000303.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|404489036|ref|YP_006713142.1| RNA-pseudouridine synthase YlyB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423682090|ref|ZP_17656929.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
gi|52003359|gb|AAU23301.1| Pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348027|gb|AAU40661.1| putative RNA-pseudouridine synthase YlyB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|317391823|gb|EFV72620.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|383438864|gb|EID46639.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
Length = 304
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 96/159 (60%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++ SR +VQ I+ V +NG V K ++ V+ GD V+ + E +PL
Sbjct: 16 RIDKYLTAVEADWSRTQVQQWIKEDRVLVNGNAV-KANYKVQEGDAVSVQVPEPEPLDVT 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC
Sbjct: 75 AEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 -----DD---LSGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|424885737|ref|ZP_18309348.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393177499|gb|EJC77540.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 341
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 107/182 (58%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLDAW+++++ + SR+R+++ I+ G V + G+ V+
Sbjct: 3 DPFKQAAGNRKVLTADETA-EGRLDAWLTAQLGEEFSRSRIKALIKDGQVFLRGEPVTDP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD T+ E + + EDIPLDI++ED++V+V++KP+ +VVHP GN TGTL
Sbjct: 62 QRKVRNGDSFEITLPEPEDPTPQGEDIPLDILHEDEDVIVISKPSGLVVHPGAGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN +++HC + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIYHCG----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|172057958|ref|YP_001814418.1| RluA family pseudouridine synthase [Exiguobacterium sibiricum
255-15]
gi|171990479|gb|ACB61401.1| pseudouridine synthase, RluA family [Exiguobacterium sibiricum
255-15]
Length = 307
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 26/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E V R+D W++ + D SR++VQ +++G V ++G++V K ++ + G + +
Sbjct: 4 QNEWAVKANGATGRIDKWLAEQQDW-SRSQVQDWLKAGHVEVDGRIV-KPNYKMSGTEEI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E L EDIPLD+VYED +V+V+NKP MVVHPA G+ +GTLVN +LHHC
Sbjct: 62 LVRIPEAVELEVLPEDIPLDVVYEDSDVIVINKPKGMVVHPAAGHVSGTLVNALLHHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------QDL-------SGINGVK-RPGIVHRIDKDTSGLLMVAK 149
>gi|427722328|ref|YP_007069605.1| ribosomal large subunit pseudouridine synthase D [Leptolyngbya sp.
PCC 7376]
gi|427354048|gb|AFY36771.1| ribosomal large subunit pseudouridine synthase D [Leptolyngbya sp.
PCC 7376]
Length = 308
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 23/170 (13%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
+ V +A RLD W+S ++D +SR+R+Q I G V+IN +V + + + GGD +
Sbjct: 6 QYQVTAEAQGQRLDQWLSLQLDDLSRSRIQKLIGQGQVAINEKVCTTKKYKLSGGDRLQV 65
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
TI L + E + LDI++EDD+ L+VNK A++VVHPAPG+ TGTLV+G+L HC
Sbjct: 66 TIPAPVSLELQPEAMDLDILFEDDHFLIVNKAANVVVHPAPGHYTGTLVHGLLAHCG--- 122
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ + I G RPGIVHRLDK T+G + +AK
Sbjct: 123 -------------------DRLAGIGGVQ-RPGIVHRLDKDTTGAIAIAK 152
>gi|325265702|ref|ZP_08132391.1| ribosomal large subunit pseudouridine synthase D [Kingella
denitrificans ATCC 33394]
gi|324982833|gb|EGC18456.1| ribosomal large subunit pseudouridine synthase D [Kingella
denitrificans ATCC 33394]
Length = 367
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 99/181 (54%), Gaps = 35/181 (19%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + RLDA ++ + SR+R+ S I+ GLV NGQ S H + GG+++ I
Sbjct: 26 TVPNELAGTRLDAALAKLLPDYSRSRITSWIKDGLVQCNGQTASP-KHKLIGGELLRVQI 84
Query: 123 S---ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
E Q EA D LDIVYEDD+V+V+NKPA +VVHPA GN TGTL+NG+L HC P
Sbjct: 85 QPSDENQAFEPEAMD--LDIVYEDDSVIVLNKPAGLVVHPAAGNWTGTLLNGLLAHC--P 140
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFGNH 239
L G R GIVHRLDK TSGL+VVAK + P NH
Sbjct: 141 EL-------------------------GQVPRAGIVHRLDKDTSGLMVVAKTL--PAQNH 173
Query: 240 F 240
Sbjct: 174 L 174
>gi|299535889|ref|ZP_07049209.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|424738829|ref|ZP_18167258.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
gi|298728641|gb|EFI69196.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|422947313|gb|EKU41710.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
Length = 303
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T++ + R+D +SS SR ++ + I G++ +NG V K + VK GD++
Sbjct: 3 QVTYTIEEQQQGERIDKALSSLQSEWSRTQIGNWISDGVIKVNGDAV-KAKYKVKAGDII 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E++ L E++ LDIVYED +VLVVNKP MVVHPAPG+ GTLVNG+++HC
Sbjct: 62 AIDVPEVEELDVVPENLDLDIVYEDADVLVVNKPKGMVVHPAPGHMGGTLVNGLMYHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|417936057|ref|ZP_12579374.1| pseudouridine synthase, RluA family [Streptococcus infantis X]
gi|343402966|gb|EGV15471.1| pseudouridine synthase, RluA family [Streptococcus infantis X]
Length = 297
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GDM+ I
Sbjct: 3 IRIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDMITYQIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 143
>gi|227892505|ref|ZP_04010310.1| pseudouridylate synthase [Lactobacillus ultunensis DSM 16047]
gi|227865626|gb|EEJ73047.1| pseudouridylate synthase [Lactobacillus ultunensis DSM 16047]
Length = 305
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S ++ +SR RV+ I+ + +N + KVS+ V+ GD V + ++PL
Sbjct: 15 RLDKFVSEQVPDLSRTRVKELIQDKNILVNNKS-EKVSYKVQAGDCVLVNVPAVKPLDVV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H LA S +
Sbjct: 74 PENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTK--DLAQSPE----- 126
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHR+DK TSGLL++AK
Sbjct: 127 -----------------GFRPGIVHRIDKDTSGLLMIAK 148
>gi|296133340|ref|YP_003640587.1| RluA family pseudouridine synthase [Thermincola potens JR]
gi|296031918|gb|ADG82686.1| pseudouridine synthase, RluA family [Thermincola potens JR]
Length = 321
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ D +SR+ +Q I G +++NG V K ++ +K G++V I + L
Sbjct: 34 RIDVYLAGIFDHLSRSFIQKLIGDGYITVNGTRV-KANYKLKAGELVRVEIPYTEELEVS 92
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE IPL+I+YED +V+V+NKP MVVHPAPGN +GTLVN +L HC
Sbjct: 93 AEPIPLEILYEDRDVIVINKPQGMVVHPAPGNYSGTLVNALLWHC--------------- 137
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHRLDK TSG+++ AK
Sbjct: 138 -KDL-------SGINGV-MRPGIVHRLDKDTSGVIMAAK 167
>gi|423483483|ref|ZP_17460173.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-2]
gi|401141034|gb|EJQ48589.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-2]
Length = 302
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 102/168 (60%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDDVVTVNGKSV-KGNYKVKENDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|37519642|ref|NP_923019.1| pseudouridine synthase [Gloeobacter violaceus PCC 7421]
gi|35210633|dbj|BAC88014.1| glr0073 [Gloeobacter violaceus PCC 7421]
Length = 310
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 97/171 (56%), Gaps = 25/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
L TV +RLD W++ ++ +SRAR+Q+ I GLV +N + + V GD V
Sbjct: 9 LTLTVQPDQSAMRLDRWLAEQVADLSRARIQALIDQGLVLLNNRP-CRPRDLVHSGDAVA 67
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
TI +PL EA I LDIVYED+ ++V++KP +VVHPAPG++ TLVN +L HC
Sbjct: 68 LTIPAPEPLAIEARPIALDIVYEDEELIVIDKPRGLVVHPAPGHSDDTLVNALLAHC--- 124
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G +RPGIVHRLDK T+GLLVVAK
Sbjct: 125 --------------------RNLSGINGV-LRPGIVHRLDKDTTGLLVVAK 154
>gi|406927514|gb|EKD63533.1| hypothetical protein ACD_51C00259G0006 [uncultured bacterium]
Length = 303
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 99/160 (61%), Gaps = 25/160 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR-A 130
RLD ++ ++GI+R ++Q I+ GLV +N + +K + +K GD +N I + +PL A
Sbjct: 12 RLDKILTESLEGITRQKIQLLIKDGLVKVNHEKSTKPNKQIKEGDFINVEIIK-KPLEWA 70
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ + + ++I++ED N LV+NKPA +VVHPAPG+ TLVNGIL+H + + S
Sbjct: 71 KPQKMDIEIIHEDGNYLVINKPAGLVVHPAPGHKENTLVNGILYHL---------KNSIS 121
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ED S+RPGIVHRLD+ TSG+LV+AK
Sbjct: 122 KKED--------------SVRPGIVHRLDQDTSGILVIAK 147
>gi|407474149|ref|YP_006788549.1| RluA family pseudouridine synthase [Clostridium acidurici 9a]
gi|407050657|gb|AFS78702.1| pseudouridine synthase, RluA family [Clostridium acidurici 9a]
Length = 302
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 101/163 (61%), Gaps = 25/163 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+DA+++ +++ SRA +Q I+ LV +N + V K + V+ GD + ++ + Q L
Sbjct: 15 RIDAYLTQQLNETSRAHIQRLIKDELVKVNNKNV-KPRYIVRTGDHIVVSLPQEQELEII 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+E+IP+D+VY D++V V+NKP MVVHPAPGN +GTLVN +L+H TL++ N +
Sbjct: 74 SENIPIDMVYNDEDVAVINKPQGMVVHPAPGNYSGTLVNALLYHFR--TLSNINNK---- 127
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+RPGIVHR+DK TSGLL++AK F+
Sbjct: 128 ------------------MRPGIVHRIDKDTSGLLMIAKNNFA 152
>gi|229545666|ref|ZP_04434391.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|307275817|ref|ZP_07556956.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2134]
gi|307291840|ref|ZP_07571711.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0411]
gi|422685833|ref|ZP_16744046.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4000]
gi|422720764|ref|ZP_16777373.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0017]
gi|422734158|ref|ZP_16790452.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1341]
gi|422739157|ref|ZP_16794340.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2141]
gi|229309234|gb|EEN75221.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|306497106|gb|EFM66652.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0411]
gi|306507509|gb|EFM76640.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2134]
gi|315029545|gb|EFT41477.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4000]
gi|315032018|gb|EFT43950.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0017]
gi|315144961|gb|EFT88977.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2141]
gi|315168880|gb|EFU12897.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1341]
Length = 310
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 12 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 69 VVTIPEPEALDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHA-- 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 127 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 156
>gi|423073746|ref|ZP_17062483.1| pseudouridine synthase, RluA family [Desulfitobacterium hafniense
DP7]
gi|361855368|gb|EHL07344.1| pseudouridine synthase, RluA family [Desulfitobacterium hafniense
DP7]
Length = 334
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ R+ G SR+ +Q I G V +NG K ++ V+ D + I + L+ E
Sbjct: 44 RLDVGVTERV-GKSRSFIQGLIEEGHVLVNG-AARKANYKVRAMDQITVVIPPPRELKVE 101
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPL+I+YED++VLVVNKP MVVHPAPG T T+VN +L+HC
Sbjct: 102 AENIPLEILYEDEDVLVVNKPQGMVVHPAPGAWTKTMVNALLYHCR-------------- 147
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G +RPGIVHR+DK TSGLLVVAK
Sbjct: 148 ---------NLSGINGV-LRPGIVHRIDKDTSGLLVVAK 176
>gi|17986660|ref|NP_539294.1| ribosomal large subunit pseudouridine synthase D [Brucella
melitensis bv. 1 str. 16M]
gi|225853117|ref|YP_002733350.1| pseudouridine synthase [Brucella melitensis ATCC 23457]
gi|384445674|ref|YP_005604393.1| RluA family pseudouridine synthase [Brucella melitensis NI]
gi|17982277|gb|AAL51558.1| ribosomal large subunit pseudouridine synthase d [Brucella
melitensis bv. 1 str. 16M]
gi|225641482|gb|ACO01396.1| pseudouridine synthase, RluA family protein [Brucella melitensis
ATCC 23457]
gi|349743663|gb|AEQ09206.1| pseudouridine synthase, RluA family [Brucella melitensis NI]
Length = 347
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 25/179 (13%)
Query: 54 NYAGVQLEETV-DTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHN 111
N +L+E + D+ A RLD W+++ + +SR+RVQS I G V+I+G +
Sbjct: 8 NEGKTRLKELIADSDAAGKRLDQWLAAALGPELSRSRVQSLIADGHVTIDGAPARETKQK 67
Query: 112 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171
++ G + + E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN
Sbjct: 68 LREGMNIAIVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNA 127
Query: 172 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+++ C + S I G RPGIVHRLDK TSG++VVAK
Sbjct: 128 LIYQCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 163
>gi|320528439|ref|ZP_08029601.1| pseudouridine synthase, RluA family [Solobacterium moorei F0204]
gi|320131353|gb|EFW23921.1| pseudouridine synthase, RluA family [Solobacterium moorei F0204]
Length = 304
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 99/161 (61%), Gaps = 26/161 (16%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K RLD ++SS + +SR RVQ G++ +NG+V +K S V GD ++C + E +P+
Sbjct: 13 KERLDKYLSSNTE-LSRTRVQQLADDGMIFVNGKV-AKSSSKVVTGDEISCDVPEDRPVD 70
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
E+IPLDI+YED +++V+NKP MVVHPAPGN + T+VN +L+HC
Sbjct: 71 ILPENIPLDILYEDHDIIVINKPKGMVVHPAPGNYSNTMVNALLYHC------------- 117
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK T+G +V K
Sbjct: 118 ---KDL-------SGINGV-IRPGIVHRIDKDTTGCIVACK 147
>gi|407783254|ref|ZP_11130457.1| pseudouridylate synthase, 23S RNA-specific [Oceanibaculum indicum
P24]
gi|407202434|gb|EKE72425.1| pseudouridylate synthase, 23S RNA-specific [Oceanibaculum indicum
P24]
Length = 336
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 95/159 (59%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++++R+ +SR+R+++ I G+V+ + V+ SH VK G+ T+ + +
Sbjct: 28 RLDRFLAARLGDLSRSRLKALIEQGMVTASDGPVTDPSHKVKEGECFAVTLPPPEAAEPD 87
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A+DIPL +VYEDD+++V++KPA MVVHPAPGN TLVN +L HC
Sbjct: 88 AQDIPLVVVYEDDDLIVIDKPAGMVVHPAPGNPDSTLVNALLAHCG-------------- 133
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHR+DK TSGLLV AK
Sbjct: 134 --------DSLSGIGGVR-RPGIVHRIDKDTSGLLVAAK 163
>gi|422708626|ref|ZP_16766154.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0027]
gi|315037134|gb|EFT49066.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0027]
Length = 310
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 12 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 69 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQDMVVHPSAGHPKGTLVNALLHHA-- 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 127 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 156
>gi|366162122|ref|ZP_09461877.1| ribosomal large subunit pseudouridine synthase D [Acetivibrio
cellulolyticus CD2]
Length = 304
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+DAWISSR+ SR+ +Q + G V +NG +V K ++ +K D + I E + L
Sbjct: 13 VRIDAWISSRLKEYSRSYIQKLLNDGHVLVNGSLV-KSNYKIKSSDEITVQIPEPEVLDI 71
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E+I + ++YED++VLVVNKP MVVHPA GN +GTLVN ++ +C
Sbjct: 72 VPENIEIPVLYEDEHVLVVNKPKGMVVHPAAGNYSGTLVNALMDYCG------------- 118
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 119 ---------DSLSSINGV-IRPGIVHRIDKDTSGVLVVAK 148
>gi|374296459|ref|YP_005046650.1| RluA family pseudouridine synthase [Clostridium clariflavum DSM
19732]
gi|359825953|gb|AEV68726.1| pseudouridine synthase, RluA family [Clostridium clariflavum DSM
19732]
Length = 311
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+DAW+S +D SR+ +Q I GLV +NG V K ++ V+ D + I E + L
Sbjct: 22 RIDAWLSKMLDKYSRSYIQKLINDGLVLVNGTAV-KSNYKVRMKDDITVQIPEPEVLDIV 80
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDI + I+YED++++VV+KP MVVHPA GN +GTLVN ++ HC
Sbjct: 81 PEDIDVPILYEDEHIIVVDKPKGMVVHPAAGNYSGTLVNALMKHCG-------------- 126
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 127 --------DNLSSINGV-IRPGIVHRIDKDTSGVLVVAK 156
>gi|126649705|ref|ZP_01721941.1| YlyB [Bacillus sp. B14905]
gi|126593424|gb|EAZ87369.1| YlyB [Bacillus sp. B14905]
Length = 303
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T++ + R+D +SS SR ++ + + G + +NG V K + VK GD++
Sbjct: 3 QVTYTIEEQQQGERIDKALSSLQSEWSRTQIGNWVSDGNIKVNGDAV-KPKYKVKAGDVI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E +PL AE++ LDIVYED +VLVVNKP MVVHPAPG+ TGTLVNG+++ C
Sbjct: 62 AIDVPEAEPLDVIAENLALDIVYEDADVLVVNKPKGMVVHPAPGHLTGTLVNGLMYQC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGI-MRPGIVHRIDKDTSGLLMVAK 149
>gi|375309375|ref|ZP_09774656.1| RNA pseudouridine synthase ylyb [Paenibacillus sp. Aloe-11]
gi|375078684|gb|EHS56911.1| RNA pseudouridine synthase ylyb [Paenibacillus sp. Aloe-11]
Length = 323
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 114/191 (59%), Gaps = 28/191 (14%)
Query: 40 SSSSSGGNNREPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVS 99
SS S+G + E + + LE T + K R+D +I+ +++ +SR+++Q I +GLV
Sbjct: 7 SSESTGLSYDEELERES---LEWTAEAGDAKTRIDKYIAEKMEDVSRSQIQLWIGNGLVL 63
Query: 100 INGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 159
+NG + K ++ + GD + ++ E + + E+IPLD+VYED +V+V+NK +VVHP
Sbjct: 64 VNGSAI-KANYKLAEGDRIELSVPEPESVDIIPENIPLDVVYEDSDVIVINKQRGLVVHP 122
Query: 160 APGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLD 219
APG+ +GTLVN +++HC D+ S I+G +RPGIVHR+D
Sbjct: 123 APGHTSGTLVNALMYHC----------------HDL-------SGING-ELRPGIVHRID 158
Query: 220 KGTSGLLVVAK 230
K TSGL++ AK
Sbjct: 159 KDTSGLIMAAK 169
>gi|254461389|ref|ZP_05074805.1| ribosomal large subunit pseudouridine synthase D [Rhodobacterales
bacterium HTCC2083]
gi|206677978|gb|EDZ42465.1| ribosomal large subunit pseudouridine synthase D [Rhodobacteraceae
bacterium HTCC2083]
Length = 341
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 93/164 (56%), Gaps = 30/164 (18%)
Query: 72 RLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD +S + +SR R+ + +G ++ING V + + G V+ T+ E
Sbjct: 17 RLDKALSRDVPESASLSRTRIAKLLDAGAITINGAVQTDPKAKITAGAQVDITVEEAVDS 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIPLD++YEDD+++VVNKPA MVVHPAPG +GTLVN +LHH
Sbjct: 77 HIEPEDIPLDVMYEDDDLIVVNKPAGMVVHPAPGTPSGTLVNALLHH------------- 123
Query: 189 FSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVVAK 230
F+ +S G S RPG+VHR+DK T+GLLVVAK
Sbjct: 124 ------------FAGKLSGVGGSKRPGVVHRIDKETTGLLVVAK 155
>gi|229061498|ref|ZP_04198842.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH603]
gi|228717732|gb|EEL69382.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH603]
Length = 302
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 102/168 (60%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ SR++VQ I+ +V++NG+ V K ++ VK D + TI
Sbjct: 8 TVAEEQKSERIDKFVAEINSEWSRSQVQQWIKDAVVTVNGKSV-KGNYKVKVNDEITVTI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTLVNG++HHC+
Sbjct: 67 PEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|262195687|ref|YP_003266896.1| pseudouridine synthase [Haliangium ochraceum DSM 14365]
gi|262079034|gb|ACY15003.1| pseudouridine synthase, RluA family [Haliangium ochraceum DSM
14365]
Length = 322
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 95/161 (59%), Gaps = 24/161 (14%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
+ RLD ++++ +SR++V+ I G V ++G V K ++GG+ V + QPL
Sbjct: 22 RARLDQFLTACELALSRSQVKRLIDEGAVQVDGAEVRKPGFKLQGGEAVEVALPAPQPLA 81
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
AE + IPLDI YED++++VV+KPA +VVHPAPG+ GTLVN +L HC
Sbjct: 82 AEPQAIPLDICYEDEHIIVVDKPAGLVVHPAPGHPDGTLVNALLAHC------------- 128
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+S G ++RPGIVHRLDK TSG++V K
Sbjct: 129 ---HDLSG--------IGGALRPGIVHRLDKDTSGVMVATK 158
>gi|422296049|gb|EKU23348.1| pseudouridine synthase [Nannochloropsis gaditana CCMP526]
Length = 311
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 91/150 (60%), Gaps = 23/150 (15%)
Query: 81 IDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIV 140
+ +SR+R ++ + +G +S++G+V++ S VK G + + E +P AEDIPLDI+
Sbjct: 5 FEDLSRSRCKALVEAGALSVDGEVLTDPSAKVKEGALYALKVPEPEPATPRAEDIPLDIL 64
Query: 141 YEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEE 200
+EDD+++V+NK A M VHPA GN TGTLVN +LHHC+
Sbjct: 65 FEDDDLIVINKAAGMTVHPAAGNWTGTLVNALLHHCA----------------------- 101
Query: 201 FSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK TSG++VVAK
Sbjct: 102 GSLSGIGGVQRPGIVHRLDKDTSGVMVVAK 131
>gi|49473932|ref|YP_031974.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana str. Toulouse]
gi|49239435|emb|CAF25784.1| Ribosomal large subunit pseudouridine synthase D [Bartonella
quintana str. Toulouse]
Length = 334
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRID-GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
++ D A RLD W++ + +SR+R+Q+ IR G + I+GQ++ + +K M+
Sbjct: 4 QQITDEGALGQRLDQWLTKQYHSALSRSRLQALIREGYLKIDGQLIHEPKTKLKPNQMIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
TI L+ + E I LDI++EDD+V+V+NK A +VVHP GN TGTLVN +++HC
Sbjct: 64 LTIPILRDAKPSGEAIKLDILFEDDHVIVINKQAGLVVHPGNGNLTGTLVNALIYHCG-- 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 122 --------------------DSLSGIGGVK-RPGIVHRLDKNTSGIMVVAK 151
>gi|339443316|ref|YP_004709321.1| hypothetical protein CXIVA_22520 [Clostridium sp. SY8519]
gi|338902717|dbj|BAK48219.1| hypothetical protein CXIVA_22520 [Clostridium sp. SY8519]
Length = 309
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 100/170 (58%), Gaps = 24/170 (14%)
Query: 62 ETVDT-KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
+T +T A +R+D +++ + SRA +Q IRSG V++NG+ V+KVS + G V
Sbjct: 6 QTFETGTADNIRIDRYLAEQFPDRSRAFLQKLIRSGEVTVNGRPVTKVSTLLAPGAQVTV 65
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I E +P EDIPL I+YED+++LV++KP MVVHP+ G+A GTLVN +L+HC
Sbjct: 66 CIPEARPAEILPEDIPLSILYEDEDLLVIDKPKGMVVHPSAGHAGGTLVNAVLYHCR-GQ 124
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L+ N E IRPGIVHR+DK T+G L+V K
Sbjct: 125 LSGINGE----------------------IRPGIVHRIDKDTTGALIVCK 152
>gi|256619215|ref|ZP_05476061.1| pseudouridylate synthase [Enterococcus faecalis ATCC 4200]
gi|256853277|ref|ZP_05558647.1| pseudouridylate synthase [Enterococcus faecalis T8]
gi|300860210|ref|ZP_07106297.1| pseudouridine synthase, RluA family [Enterococcus faecalis TUSoD
Ef11]
gi|428767158|ref|YP_007153269.1| pseudouridylate synthase, 23S rRNA-specific [Enterococcus faecalis
str. Symbioflor 1]
gi|256598742|gb|EEU17918.1| pseudouridylate synthase [Enterococcus faecalis ATCC 4200]
gi|256711736|gb|EEU26774.1| pseudouridylate synthase [Enterococcus faecalis T8]
gi|300849249|gb|EFK76999.1| pseudouridine synthase, RluA family [Enterococcus faecalis TUSoD
Ef11]
gi|427185331|emb|CCO72555.1| pseudouridylate synthase, 23S rRNA-specific [Enterococcus faecalis
str. Symbioflor 1]
Length = 301
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 3 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 60 VVTIPEPEALDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHA-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 147
>gi|22299081|ref|NP_682328.1| ribosomal large subunit pseudouridine synthase D
[Thermosynechococcus elongatus BP-1]
gi|22295263|dbj|BAC09090.1| ribosomal large subunit pseudouridine synthase D
[Thermosynechococcus elongatus BP-1]
Length = 308
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 99/172 (57%), Gaps = 24/172 (13%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T + G RLD +++ + SR+R Q I+ G V +NGQV + + + GG+++ +
Sbjct: 6 TFKVEKGGNRLDTFLAQQHPEFSRSRWQQLIQQGHVRLNGQVCDRKNQPLSGGEVLEVVL 65
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+PL E +PL I+YED+ +L++NKP +VVHPAPG++ GTLV+G+L HC P L
Sbjct: 66 PTPEPLDLVPEPLPLSILYEDEELLILNKPVDLVVHPAPGHSHGTLVHGLLAHC--PDL- 122
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ I G RPGIVHRLDK TSG++VVAK F+
Sbjct: 123 --------------------TGIGGVQ-RPGIVHRLDKDTSGVMVVAKTEFA 153
>gi|400753763|ref|YP_006562131.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis 2.10]
gi|398652916|gb|AFO86886.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis 2.10]
Length = 344
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 26/162 (16%)
Query: 72 RLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD +S + +SR R+ I +G + +NG VVS V G ++ TI E +
Sbjct: 17 RLDKAVSRDVPEEATLSRTRLARLIEAGQLQVNGTVVSDAKAKVDEGALIEITIEEAEDS 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
EDIPL+++YEDD+++V+NKP MVVHPAPG +GTLVN +LHHC
Sbjct: 77 HIGPEDIPLEVIYEDDDLIVINKPTGMVVHPAPGTPSGTLVNALLHHCG----------- 125
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S + G RPGIVHR+DK TSGLLVVAK
Sbjct: 126 -----------DNLSGVGGVK-RPGIVHRIDKETSGLLVVAK 155
>gi|421277207|ref|ZP_15728027.1| pseudouridine synthase [Streptococcus mitis SPAR10]
gi|395876488|gb|EJG87564.1| pseudouridine synthase [Streptococcus mitis SPAR10]
Length = 297
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GDM+ I
Sbjct: 3 IKIERGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDMITYQIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|423561702|ref|ZP_17537978.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
gi|401201959|gb|EJR08824.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
Length = 302
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 101/159 (63%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ + SR++VQ I+ +V++NG+ V KV++ VK D + TI + + +
Sbjct: 17 RIDKFVAGINNEWSRSQVQQWIKDDVVTVNGKAV-KVNYKVKEEDEITVTIPDPEASDIQ 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 76 PEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT-------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 --DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|423711105|ref|ZP_17685425.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
gi|395415019|gb|EJF81454.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
Length = 334
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+ D A RLD W++ + + +SR+R+Q IR G + I+GQ++ + +K M+
Sbjct: 4 QRVTDENALGQRLDQWLAEQYKNELSRSRLQVLIREGSLKIDGQLIKEPKTKLKPNQMIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
TI L + E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 64 LTIPVLSDAKPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHC--- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 -------------------HDSLSGIGGIK-RPGIVHRLDKNTSGVMVVAK 151
>gi|33864373|ref|NP_895933.1| pseudouridylate synthase specific to ribosomal large subunit
[Prochlorococcus marinus str. MIT 9313]
gi|33641153|emb|CAE22283.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. MIT 9313]
Length = 324
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 98/166 (59%), Gaps = 28/166 (16%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ S+ SR+ +Q I +GLV +NG + + ++ GD V + +
Sbjct: 24 KPLPMRLDRWLVSQRSEQSRSHIQKFIEAGLVRVNG-ITGRAKTPLRQGDEVELWMPPPE 82
Query: 127 PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASS 184
PL + E++PLD+++ED +++V+NKPA + VHPAPGN GTLVNG+LHHCS LP
Sbjct: 83 PLPYLQPEEMPLDVLFEDRHLIVINKPAGLTVHPAPGNRNGTLVNGLLHHCSDLP----- 137
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 138 -------------------GISG-KLRPGIVHRLDKDTTGCIVIAK 163
>gi|256959131|ref|ZP_05563302.1| pseudouridylate synthase [Enterococcus faecalis DS5]
gi|256949627|gb|EEU66259.1| pseudouridylate synthase [Enterococcus faecalis DS5]
Length = 301
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 3 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 60 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQDMVVHPSAGHPKGTLVNALLHHA-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 147
>gi|318040686|ref|ZP_07972642.1| pseudouridylate synthase, 23S RNA-specific [Synechococcus sp.
CB0101]
Length = 404
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 96/165 (58%), Gaps = 26/165 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ ++ SRAR+Q I SG V +NG V + ++ D V + +
Sbjct: 18 KPLPMRLDRWLVAQRPEQSRARIQKFIESGYVRVNG-VTGRAKTPLRQSDTVELWMPPPE 76
Query: 127 PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
PL ++IPLD+++ED++++V+NKPA + VHPAPGN GTLVNG+LHHC P L
Sbjct: 77 PLPYLMPQEIPLDVLFEDEHLIVLNKPAGLTVHPAPGNKDGTLVNGLLHHC--PDL---- 130
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPGIVHRLDK T+G +VVAK
Sbjct: 131 -----------------PGISG-KLRPGIVHRLDKDTTGCIVVAK 157
>gi|209525222|ref|ZP_03273765.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|423067859|ref|ZP_17056649.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
gi|209494407|gb|EDZ94719.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|406710602|gb|EKD05809.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
Length = 308
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 90/159 (56%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD W+S R+ +SR+R+Q+ I SG V IN + V+ GD + I PL +
Sbjct: 16 RLDKWLSERVHQLSRSRLQALISSGHVWINNSPCTSKKATVQIGDRIQVEIPPAIPLELK 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A +IPLDI+YED+ +L++NKPA +VVHPAPG+ TLVN +L HC
Sbjct: 76 ATNIPLDILYEDEELLIINKPAGLVVHPAPGHENDTLVNALLAHC--------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + I G RPGIVHRLDK T+G + +AK
Sbjct: 121 --------ETLAGIGGVQ-RPGIVHRLDKDTTGAIAIAK 150
>gi|118443119|ref|YP_878025.1| ribosomal large subunit pseudouridine synthase D [Clostridium novyi
NT]
gi|118133575|gb|ABK60619.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Clostridium novyi NT]
Length = 304
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +IS + SR+ Q I V +NG + K ++ +K GD V TI E + + E
Sbjct: 16 RLDVFISKCFEEKSRSYAQKLIEDKNVLVNGSI-KKSNYKLKTGDNVEVTIKEDETINIE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDI L+I+YED++V+V++KP MVVHP GN +GTLVNG+L+HC
Sbjct: 75 PEDIKLNILYEDEDVIVIDKPQGMVVHPGNGNYSGTLVNGLLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G +RPGIVHR+DK TSG+LVVAK
Sbjct: 120 --------DSLSSING-DVRPGIVHRIDKDTSGVLVVAK 149
>gi|395780276|ref|ZP_10460743.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
gi|395419543|gb|EJF85843.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
Length = 337
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+ D A RLD W++ + + +SR+R+Q IR G + I+GQ++ + +K M+
Sbjct: 4 QRVTDEDALGQRLDQWLAEQYKNELSRSRLQVLIREGSLKIDGQLIKEPKTKLKPNQMIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
TI L + E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 64 LTIPVLSDAKPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHC--- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 -------------------HDSLSGIGGIK-RPGIVHRLDKNTSGVMVVAK 151
>gi|118581597|ref|YP_902847.1| RluA family pseudouridine synthase [Pelobacter propionicus DSM
2379]
gi|118504307|gb|ABL00790.1| ribosomal large subunit pseudouridine synthase D [Pelobacter
propionicus DSM 2379]
Length = 315
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++SS++ +R+ +Q I SG + ++G+ V + S +KGG+ ++ + E R
Sbjct: 12 VRLDLFLSSQLASETRSTIQRLIESGNIMVDGREV-RPSLKLKGGESISIQLPEPVAARP 70
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E IPL+++YED +++V+NKPA MVVHP PGN++GTLVN +L HC+
Sbjct: 71 LPESIPLEVLYEDGDLIVINKPAGMVVHPGPGNSSGTLVNALLAHCT------------- 117
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+S G +RPGIVHRLDKGTSG++VVAK
Sbjct: 118 ---DLSG--------IGGELRPGIVHRLDKGTSGVMVVAK 146
>gi|148544158|ref|YP_001271528.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri DSM 20016]
gi|184153530|ref|YP_001841871.1| pseudouridylate synthase [Lactobacillus reuteri JCM 1112]
gi|227364587|ref|ZP_03848648.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM2-3]
gi|325682298|ref|ZP_08161815.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM4-1A]
gi|148531192|gb|ABQ83191.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri DSM 20016]
gi|183224874|dbj|BAG25391.1| pseudouridylate synthase [Lactobacillus reuteri JCM 1112]
gi|227070424|gb|EEI08786.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM2-3]
gi|324978137|gb|EGC15087.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM4-1A]
Length = 303
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 99/174 (56%), Gaps = 31/174 (17%)
Query: 59 QLEETVDTKAGKL--RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
+LE T+D G++ R+D + D SR+++Q I G V +NG+ V K + + GD
Sbjct: 4 ELELTID---GEMVGRIDKQLGHHFDQFSRSQIQHWIEDGHVLVNGKQV-KPKYKLLVGD 59
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
V E Q + EDIPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 60 HVQIIPEEPQKIDLAPEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHS 119
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 120 PL------------------------STING-EFRPGIVHRIDKDTSGLLMVAK 148
>gi|399992104|ref|YP_006572344.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398656659|gb|AFO90625.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 344
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 26/162 (16%)
Query: 72 RLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD +S + +SR R+ I +G + +NG VVS V G ++ TI E +
Sbjct: 17 RLDKAVSRDVPEEATLSRTRLARLIEAGQLQVNGTVVSDAKAKVDEGALIEITIEEAEDS 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
EDIPL+++YEDD+++V+NKP MVVHPAPG +GTLVN +LHHC
Sbjct: 77 HIGPEDIPLEVIYEDDDLIVINKPTGMVVHPAPGTPSGTLVNALLHHCG----------- 125
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S + G RPGIVHR+DK TSGLLVVAK
Sbjct: 126 -----------DNLSGVGGVK-RPGIVHRIDKETSGLLVVAK 155
>gi|194468025|ref|ZP_03074011.1| pseudouridine synthase, RluA family [Lactobacillus reuteri 100-23]
gi|194452878|gb|EDX41776.1| pseudouridine synthase, RluA family [Lactobacillus reuteri 100-23]
Length = 303
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 99/174 (56%), Gaps = 31/174 (17%)
Query: 59 QLEETVDTKAGKL--RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
+LE T+D G++ R+D + D SR+++Q I G V +NG+ V K + + GD
Sbjct: 4 ELELTID---GEMVGRIDKQLGHHFDQFSRSQIQHWIEDGHVLVNGKQV-KPKYKLLVGD 59
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
V E Q + EDIPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 60 HVQIIPEEPQKIDLAPEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHS 119
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 120 PL------------------------STING-EFRPGIVHRIDKDTSGLLMVAK 148
>gi|33866856|ref|NP_898415.1| pseudouridylate synthase specific to ribosomal large subunit
[Synechococcus sp. WH 8102]
gi|33639457|emb|CAE08841.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Synechococcus sp. WH 8102]
Length = 331
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 26/173 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L V K +RLD W+ S+ SRAR+Q I +G V +NG+ K ++ GD V
Sbjct: 25 ELLTLVYPKPLPMRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKT-GKAKTPLRQGDEV 83
Query: 119 NCTISELQPL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ +PL + E + LD+++EDD+++V+NKPA + VHPAPGN GTLVNG+LHHC
Sbjct: 84 QMWMPPPEPLPYLKPEPMALDVLFEDDHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHC- 142
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
P L ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 143 -PDL---------------------PGISG-KLRPGIVHRLDKDTTGCIVIAK 172
>gi|417837540|ref|ZP_12483778.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii pf01]
gi|338761083|gb|EGP12352.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii pf01]
Length = 304
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 27/167 (16%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D + G RLD I+ +I +SR +++ + + +N + KVS+ V+ GD+++ TI
Sbjct: 9 IDDEKG--RLDKVIAEKITDLSRTKIKELVNDKNILVNNKA-EKVSYKVQSGDVIDVTIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
++PL EAE++ LDIVYED +V+VVNKP MVVHP+ G+ TLVNG+L+H
Sbjct: 66 PVKPLSLEAENLHLDIVYEDSDVIVVNKPQGMVVHPSAGHPDHTLVNGLLYHT------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL++AK
Sbjct: 119 ---------RDLADSPE--------RFRPGIVHRIDKDTSGLLMIAK 148
>gi|309792569|ref|ZP_07687031.1| RluA family pseudouridine synthase [Oscillochloris trichoides DG-6]
gi|308225383|gb|EFO79149.1| RluA family pseudouridine synthase [Oscillochloris trichoides DG6]
Length = 299
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 95/167 (56%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ +A RLD +++ + +SR+ VQ I +G V +N Q V + SH ++ GD+V+ T+
Sbjct: 1 MEAQAAGHRLDRFVAQALPDLSRSFVQHLIAAGQVLVNAQAV-RPSHALRHGDLVSVTVP 59
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
QP+ E IPL +VYED +V+VV KPA MVVHPAPG+ GTLVN +L
Sbjct: 60 PAQPVALVPEAIPLHVVYEDADVVVVEKPAGMVVHPAPGHPNGTLVNALL---------- 109
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ G +RPGIVHRLD GTSGLLVVA+
Sbjct: 110 ---------------ARYPDMQVGGDLRPGIVHRLDAGTSGLLVVAR 141
>gi|357238999|ref|ZP_09126335.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
gi|356752721|gb|EHI69846.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
Length = 299
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 96/159 (60%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ D +SR++ I+ GLV +NGQ K + V+ GD + I + + L +
Sbjct: 11 RLDKALADLTD-LSRSQANDQIKQGLVLVNGQA-KKAKYTVQLGDKITYQIPQEEVLEYK 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPLDI+YEDD + +VNKP MVVHP+ G+A+GT+VN +++H
Sbjct: 69 AEDIPLDIIYEDDALAIVNKPQGMVVHPSAGHASGTMVNALMYHI--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 --------KNLSSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|229086457|ref|ZP_04218629.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-44]
gi|228696774|gb|EEL49587.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-44]
Length = 302
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR++VQ I+ G+V++NG + K ++ VK D + I
Sbjct: 8 TVKEEQKSERIDKFLAGINNEWSRSQVQQWIKDGVVTVNGNDI-KGNYKVKENDEIAVAI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG+++HC+
Sbjct: 67 PEPEELDIRAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMYHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|385825909|ref|YP_005862251.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii DPC 6026]
gi|329667353|gb|AEB93301.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii DPC 6026]
Length = 304
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 27/167 (16%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D + G RLD I+ +I +SR +++ + + +N + KVS+ V+ GD+++ TI
Sbjct: 9 IDDEKG--RLDKVIAEKITDLSRTKIKELVNDKNILVNNKA-EKVSYKVQSGDVIDVTIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
++PL EAE++ LDIVYED +V+VVNKP MVVHP+ G+ TLVNG+L+H
Sbjct: 66 PVKPLSLEAENLHLDIVYEDSDVIVVNKPQGMVVHPSAGHPDHTLVNGLLYHT------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL++AK
Sbjct: 119 ---------RDLADSPE--------GFRPGIVHRIDKDTSGLLMIAK 148
>gi|254495420|ref|ZP_05108344.1| ribosomal large subunit pseudouridine synthase D [Polaribacter sp.
MED152]
gi|85819775|gb|EAQ40932.1| ribosomal large subunit pseudouridine synthase D [Polaribacter sp.
MED152]
Length = 345
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 35/169 (20%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LR+D ++ + I+ +R +VQ + ++G V +N + K +H VK D+V ++ P A
Sbjct: 29 LRVDKFLMNFIENATRNKVQQAAKAGNVLVN-DIAVKSNHKVKPKDVVRVVLA-YPP--A 84
Query: 131 E----AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSN 185
E AEDIPLDI+YEDD V+VVNKPA MVVHP GN +GTLVNG++HH +LPT +SN
Sbjct: 85 ENLLVAEDIPLDIIYEDDAVIVVNKPAGMVVHPGHGNYSGTLVNGLIHHIENLPT--NSN 142
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ RPG+VHR+DK TSGLLVVAK F+
Sbjct: 143 E------------------------RPGLVHRIDKDTSGLLVVAKTEFA 167
>gi|395765671|ref|ZP_10446265.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
gi|395411225|gb|EJF77759.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
Length = 334
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 99/171 (57%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
++ D A RLD W++ + + +SR+R+Q+ IR G + ++GQ++ + +K ++
Sbjct: 4 QQITDEDALGQRLDQWLAKQYHNALSRSRLQTLIREGYLKVDGQLIKEPKTKLKPNQIIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
T+ L+ E I LDI++EDD+V+V+NKPA +VVHP GN +GTLVN +++HC
Sbjct: 64 LTMPTLRDAEPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWSGTLVNALIYHCG-- 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I G RPGIVHRLDK T+G++VVAK
Sbjct: 122 --------------------ESLSGIGGIK-RPGIVHRLDKNTTGVMVVAK 151
>gi|357024379|ref|ZP_09086532.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
gi|355543733|gb|EHH12856.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
Length = 341
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 94/166 (56%), Gaps = 24/166 (14%)
Query: 66 TKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
T+A RLD W++ + +SR RVQ I+ G V I G+ V + + GD+V+ + E
Sbjct: 18 TEAAGQRLDQWLAGMLGPEMSRNRVQMLIKQGAVRIGGKPVDEAKRKLAAGDVVSVVMPE 77
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
+P + E I LDI+YED ++V++KPA +VVHP GN TGTLVN ++HHC
Sbjct: 78 PEPATPQGEAIALDILYEDAELIVIDKPAGLVVHPGAGNWTGTLVNALIHHCG------- 130
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ---------------DSLSGIGGVK-RPGIVHRLDKETSGVMVVAK 160
>gi|282896340|ref|ZP_06304362.1| Pseudouridine synthase, RluD [Raphidiopsis brookii D9]
gi|281198836|gb|EFA73715.1| Pseudouridine synthase, RluD [Raphidiopsis brookii D9]
Length = 323
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 26/160 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++SS I +SR+R+Q I G V +NG+V + + GG+ + + +Q +
Sbjct: 31 RLDRYLSSVIPDLSRSRIQDLIEQGYVQVNGKVCYSKNITLDGGEYLEVEVPPVQAAQLV 90
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFS 190
A+DIPLDI+YED+ +L++NKPA +VVHPAPG+ GTLV+ +L HC +LP +
Sbjct: 91 AQDIPLDILYEDEQLLILNKPAGLVVHPAPGHLEGTLVHALLAHCPNLPGI--------- 141
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G + +AK
Sbjct: 142 ----------------GGVQRPGIVHRLDKDTTGAIAIAK 165
>gi|149202314|ref|ZP_01879287.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
gi|149144412|gb|EDM32443.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
Length = 342
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 86/147 (58%), Gaps = 23/147 (15%)
Query: 84 ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYED 143
+SR R+ + G V +NG VVS+ V+ GD++ + E + E I L++VYED
Sbjct: 32 LSRTRLARLLEEGAVRVNGAVVSEAKARVQAGDLIEIVVPEARESHMAPEAIALEVVYED 91
Query: 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSS 203
D+++VVNKPA MVVHPAPG+ GTLVN +LHHC + S
Sbjct: 92 DDLIVVNKPAGMVVHPAPGSPEGTLVNALLHHCG----------------------DSLS 129
Query: 204 SISGASIRPGIVHRLDKGTSGLLVVAK 230
+ GA RPGIVHR+DK TSGLLVVAK
Sbjct: 130 GVGGAK-RPGIVHRIDKETSGLLVVAK 155
>gi|395778620|ref|ZP_10459132.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|423715067|ref|ZP_17689291.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
gi|395417828|gb|EJF84165.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|395430551|gb|EJF96593.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
Length = 334
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 100/174 (57%), Gaps = 28/174 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+++ D A RLD W++ + + SR+R+Q+ IR G + I+GQ + + +K ++
Sbjct: 3 IQKITDEGALGQRLDQWLAKQYHTVLSRSRLQTLIREGCLKIDGQFIKEPKTKLKSNQII 62
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ +L+ AE I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 ELAMPDLRDAEPSAEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHC-- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVVAK 230
+S+S G RPGIVHRLDK TSG++VVAK
Sbjct: 121 -----------------------GNSLSGIGGVKRPGIVHRLDKNTSGVMVVAK 151
>gi|319406711|emb|CBI80344.1| ribosomal large subunit pseudouridine synthase D [Bartonella sp.
1-1C]
Length = 333
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 98/164 (59%), Gaps = 24/164 (14%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D W++ + G +SR+R+Q+ IR G + I+GQ++ + +K ++ TI +
Sbjct: 14 RIDQWLAKQYKGELSRSRLQTLIREGYLKIDGQLIKEPKTKLKSNQIIELTIPTPNDAQP 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ E I LDI++ED++++V+NKPA +VVHP GN TGTLVNG+++HC
Sbjct: 74 QGEAIALDILFEDNHIIVINKPAGLVVHPGNGNWTGTLVNGLIYHC-------------- 119
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ S I G RPGIVHRLDK TSG++V+AK F+
Sbjct: 120 --------RDSLSGIGGIK-RPGIVHRLDKDTSGVMVIAKSDFA 154
>gi|312866736|ref|ZP_07726950.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
gi|311097817|gb|EFQ56047.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
Length = 296
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SRA I+ G V +NG V K + VK GD++ + E++ + E
Sbjct: 11 RLDKALAD-LTPLSRAVANEQIKEGKVLVNG-TVKKAKYTVKEGDIIQYEVPEVEEVSYE 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 69 AEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTLVNALLYHV--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -KDL-------SGING-ELRPGIVHRIDKDTSGLLMVAK 143
>gi|257416242|ref|ZP_05593236.1| pseudouridylate synthase [Enterococcus faecalis ARO1/DG]
gi|257158070|gb|EEU88030.1| pseudouridylate synthase [Enterococcus faecalis ARO1/DG]
Length = 301
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 3 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 60 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPNGTLVNALLHHA-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 147
>gi|78044742|ref|YP_360337.1| ribosomal large subunit pseudouridine synthase A [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996857|gb|ABB15756.1| ribosomal large subunit pseudouridine synthase, RluA family
[Carboxydothermus hydrogenoformans Z-2901]
Length = 305
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 26/173 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRID-GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+++ V+++ LRLD +++ + + +SR+ ++ I G V++NG + K S+ V+GG++
Sbjct: 4 EIKVVVNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNG-LHRKASYKVRGGEI 62
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ + + L + E+IPLDIVYED++++VVNK A MVVHPA GN GTLVN +L+HC
Sbjct: 63 IAVLLPPPRELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHCQ 122
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S G +RPGIVHRLDK TSGLLVVAK
Sbjct: 123 ------------------------NLSGIGGVLRPGIVHRLDKDTSGLLVVAK 151
>gi|419442415|ref|ZP_13982446.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13224]
gi|379554382|gb|EHZ19462.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13224]
Length = 295
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DKGTSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKGTSGLLMIAK 143
>gi|164687826|ref|ZP_02211854.1| hypothetical protein CLOBAR_01470 [Clostridium bartlettii DSM
16795]
gi|164603101|gb|EDQ96566.1| pseudouridine synthase, RluA family [Clostridium bartlettii DSM
16795]
Length = 307
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 97/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++SS++ +SR+ +Q I+ V +NG++ K + VK D V I + L
Sbjct: 21 RLDVYLSSQLGEMSRSYIQKIIKDKKVKVNGKI-EKAKYAVKEDDSVVIEIPAPKLLEVI 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD++L+VNKP MVVHPAPGN TLVN IL+HC
Sbjct: 80 PQDIPIDIVYEDDDLLIVNKPQDMVVHPAPGNYENTLVNAILYHC--------------- 124
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ SSI+G IRPGIVHR+DK TSG+L++AK
Sbjct: 125 -------KDNLSSINGV-IRPGIVHRIDKDTSGILMIAK 155
>gi|116074038|ref|ZP_01471300.1| Pseudouridine synthase, RluD [Synechococcus sp. RS9916]
gi|116069343|gb|EAU75095.1| Pseudouridine synthase, RluD [Synechococcus sp. RS9916]
Length = 343
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 96/165 (58%), Gaps = 26/165 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ S+ SRAR+Q I +G V +NG+ K ++ GD V + +
Sbjct: 36 KPLPMRLDRWLVSQRSEQSRARIQKFIDAGFVRVNGKT-GKAKTPLRDGDEVQLWMPPPE 94
Query: 127 PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
PL + E + LD+++EDD+++V+NKPA + VHPAPGN GTLVNG+LHHC P L
Sbjct: 95 PLPYLKPEPMDLDVLFEDDHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHC--PDL---- 148
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 149 -----------------PGISG-KLRPGIVHRLDKDTTGCIVIAK 175
>gi|42519111|ref|NP_965041.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii NCC 533]
gi|41583398|gb|AAS09007.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii NCC 533]
Length = 304
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 27/167 (16%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D + G RLD I+ +I +SR +++ + + +N + KVS+ V+ GD+++ TI
Sbjct: 9 IDDEKG--RLDKVIAEKITDLSRTKIKELVNDKNILVNNKA-EKVSYKVQSGDVIDVTIP 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
++PL EAE++ LDIVYED +V+VVNKP MVVHP+ G+ TLVNG+L+H
Sbjct: 66 PVKPLSLEAENLHLDIVYEDSDVIVVNKPQGMVVHPSAGHPDHTLVNGLLYHT------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL++AK
Sbjct: 119 ---------RDLADSPE--------GFRPGIVHRIDKDTSGLLMIAK 148
>gi|227518911|ref|ZP_03948960.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|229549858|ref|ZP_04438583.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|293383481|ref|ZP_06629394.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis R712]
gi|293388864|ref|ZP_06633350.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis S613]
gi|307269533|ref|ZP_07550872.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4248]
gi|307277912|ref|ZP_07558996.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0860]
gi|307289260|ref|ZP_07569216.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0109]
gi|312901873|ref|ZP_07761138.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0470]
gi|312907690|ref|ZP_07766681.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
512]
gi|312910308|ref|ZP_07769155.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
516]
gi|312951652|ref|ZP_07770547.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0102]
gi|384513397|ref|YP_005708490.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis OG1RF]
gi|422692868|ref|ZP_16750883.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0031]
gi|422699060|ref|ZP_16756933.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1346]
gi|422701912|ref|ZP_16759752.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1342]
gi|422704628|ref|ZP_16762438.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1302]
gi|422706513|ref|ZP_16764211.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0043]
gi|422714465|ref|ZP_16771191.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309A]
gi|422715722|ref|ZP_16772438.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309B]
gi|422727205|ref|ZP_16783648.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0312]
gi|422731593|ref|ZP_16787951.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0645]
gi|422869198|ref|ZP_16915718.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1467]
gi|424676609|ref|ZP_18113480.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV103]
gi|424681575|ref|ZP_18118362.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV116]
gi|424683765|ref|ZP_18120515.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV129]
gi|424686331|ref|ZP_18122999.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV25]
gi|424690397|ref|ZP_18126932.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV31]
gi|424695490|ref|ZP_18131873.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV37]
gi|424696771|ref|ZP_18133112.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV41]
gi|424699843|ref|ZP_18136054.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV62]
gi|424703143|ref|ZP_18139277.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV63]
gi|424707360|ref|ZP_18143344.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV65]
gi|424716980|ref|ZP_18146278.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV68]
gi|424720558|ref|ZP_18149659.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV72]
gi|424724107|ref|ZP_18153056.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV73]
gi|424733698|ref|ZP_18162253.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV81]
gi|424744003|ref|ZP_18172308.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV85]
gi|424750489|ref|ZP_18178553.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV93]
gi|227073600|gb|EEI11563.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|229305127|gb|EEN71123.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|291079272|gb|EFE16636.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis R712]
gi|291081789|gb|EFE18752.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis S613]
gi|306499969|gb|EFM69330.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0109]
gi|306505309|gb|EFM74495.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0860]
gi|306514153|gb|EFM82729.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4248]
gi|310626718|gb|EFQ10001.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
512]
gi|310630369|gb|EFQ13652.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0102]
gi|311289581|gb|EFQ68137.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
516]
gi|311291066|gb|EFQ69622.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0470]
gi|315152327|gb|EFT96343.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0031]
gi|315156128|gb|EFU00145.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0043]
gi|315158230|gb|EFU02247.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0312]
gi|315162361|gb|EFU06378.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0645]
gi|315163874|gb|EFU07891.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1302]
gi|315169613|gb|EFU13630.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1342]
gi|315172438|gb|EFU16455.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1346]
gi|315576067|gb|EFU88258.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309B]
gi|315580642|gb|EFU92833.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309A]
gi|327535286|gb|AEA94120.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis OG1RF]
gi|329571882|gb|EGG53560.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1467]
gi|402350674|gb|EJU85572.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV116]
gi|402356621|gb|EJU91352.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV103]
gi|402364130|gb|EJU98573.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV129]
gi|402364240|gb|EJU98682.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV31]
gi|402367865|gb|EJV02202.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV25]
gi|402368185|gb|EJV02505.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV37]
gi|402375342|gb|EJV09329.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV62]
gi|402377100|gb|EJV11011.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV41]
gi|402384958|gb|EJV18499.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV65]
gi|402385148|gb|EJV18688.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV63]
gi|402386328|gb|EJV19834.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV68]
gi|402391311|gb|EJV24622.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV81]
gi|402393029|gb|EJV26259.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV72]
gi|402395918|gb|EJV28995.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV73]
gi|402399426|gb|EJV32298.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV85]
gi|402406788|gb|EJV39334.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV93]
Length = 310
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 12 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 69 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHA-- 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 127 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 156
>gi|443242482|ref|YP_007375707.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
gi|442799881|gb|AGC75686.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
Length = 346
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 98/163 (60%), Gaps = 31/163 (19%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LR+D ++ + I+ +R+++Q I+ G V++NG++V K ++ VK D + + P
Sbjct: 30 LRVDKYLMNFIENATRSKIQQGIKEGAVTVNGEIV-KSNYKVKPHDDIRVSFD--HPPHE 86
Query: 131 E---AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQE 187
AEDIPLDIVYEDD+++VVNKPA MVVHP GN +GTL+N ++HH
Sbjct: 87 SLLIAEDIPLDIVYEDDHLVVVNKPAGMVVHPGHGNYSGTLINALIHH------------ 134
Query: 188 AFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
F + + +S RPG+VHR+DK TSGLLVVAK
Sbjct: 135 -------------FENLPNNSSNRPGLVHRIDKDTSGLLVVAK 164
>gi|307273068|ref|ZP_07554314.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0855]
gi|422695134|ref|ZP_16753122.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4244]
gi|422728751|ref|ZP_16785157.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0012]
gi|424761167|ref|ZP_18188749.1| pseudouridine synthase, RluA family [Enterococcus faecalis R508]
gi|306510053|gb|EFM79077.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0855]
gi|315147417|gb|EFT91433.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4244]
gi|315150758|gb|EFT94774.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0012]
gi|402402430|gb|EJV35146.1| pseudouridine synthase, RluA family [Enterococcus faecalis R508]
Length = 310
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 12 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 69 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPNGTLVNALLHHA-- 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 127 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 156
>gi|294786018|ref|ZP_06751305.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_27]
gi|294486355|gb|EFG33718.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_27]
Length = 316
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 103/171 (60%), Gaps = 24/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E V ++ +RLD ++S +I+ +R+ ++ I + V IN ++++K +K G+ +
Sbjct: 8 FEFEVSSEYEGMRLDKYLSEQIEEATRSYLEKLIDNNYVKINSKIINKNGRKLKLGEKIE 67
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+I E + + EAE+I LDIVYE+D+ +V+NK MVVHPA GN +GTLVN +L++ +
Sbjct: 68 ISIPEEENIDIEAENISLDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNALLYYTNNL 127
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 128 -----------------------SSING-NIRPGIIHRLDKDTSGLILVAK 154
>gi|387879746|ref|YP_006310049.1| RluA family pseudouridine synthase [Streptococcus parasanguinis
FW213]
gi|386793197|gb|AFJ26232.1| RluA family pseudouridine synthase [Streptococcus parasanguinis
FW213]
Length = 296
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SRA I+ G V +NG V K + VK GD++ + E++ + E
Sbjct: 11 RLDKALAD-LTPLSRAVANEQIKEGKVLVNG-TVKKAKYTVKEGDIIQYEVPEVEEVSYE 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 69 AEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTLVNALLYHI--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -KDL-------SGING-ELRPGIVHRIDKDTSGLLMVAK 143
>gi|395242328|ref|ZP_10419325.1| Pseudouridine synthase [Lactobacillus pasteurii CRBIP 24.76]
gi|394480060|emb|CCI85565.1| Pseudouridine synthase [Lactobacillus pasteurii CRBIP 24.76]
Length = 301
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 95/161 (59%), Gaps = 25/161 (15%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K RLD I+ ++ +SR R++ I S + +N + K S+ V+ GD + + L+PL
Sbjct: 13 KGRLDKVIAEKLSDLSRTRIRELIDSQNILVNDKK-EKASYKVQAGDKIVVNVPALEPLN 71
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
EAEDIPLDIVYED +V+VVNKP MVVHP+ G+ TLVN +L+H LA+S E F
Sbjct: 72 VEAEDIPLDIVYEDQDVIVVNKPQGMVVHPSAGHPNYTLVNALLYHTK--DLAAS-PEGF 128
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHR+DK TSGLL++AK
Sbjct: 129 ---------------------RPGIVHRIDKDTSGLLMIAK 148
>gi|395791384|ref|ZP_10470842.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
gi|395408747|gb|EJF75357.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
Length = 334
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 24/175 (13%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
++ D A RLD W++ + + SR+R+Q+ IR G + ++GQ++ + +K ++
Sbjct: 4 QQITDEGALGQRLDQWLAKQYHNVLSRSRLQTLIREGYLKVDGQLIKEPKTKLKPNQIIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
T+ L+ L E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 64 LTMPVLRDLAPSGEAIVLDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ S I G RPGIVHRLDK TSG+++VAK F+
Sbjct: 122 --------------------KSLSGIGGVR-RPGIVHRLDKNTSGVMIVAKNDFA 155
>gi|424827321|ref|ZP_18252130.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
gi|365980244|gb|EHN16280.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
Length = 305
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 99/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ + +RLD ++S + SR+ +Q I G V +N + K ++ +K GD + I
Sbjct: 8 VEKEFDNVRLDLYLSKIFEDKSRSYLQGIIHEGNVLVNNKG-KKRNYKLKAGDNIEVNIP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTLVN +L HC
Sbjct: 67 EPKLLQIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTLVNALLSHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSG+LVVAK
Sbjct: 120 ---------KDL-------SGINGVA-RPGIVHRIDKDTSGILVVAK 149
>gi|330446994|ref|ZP_08310645.1| 23S rRNA pseudouridine synthase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491185|dbj|GAA05142.1| 23S rRNA pseudouridine synthase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 324
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 96/175 (54%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++L TV +RLD ++ SR+R++ I +G+VS+NG+VV K + GG+
Sbjct: 5 IELTNTVGESQLGMRLDQVVAELYPDYSRSRIKDWILNGMVSVNGKVVKKPREKMMGGEE 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ +R A+DIPLDIVYEDD++LV+NKP VVHP G GT++N +LHHC
Sbjct: 65 LFIQAEIEDEVRWVAQDIPLDIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLHHC- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P+LA R GIVHRLDK T+GL+VVAK I
Sbjct: 124 -PSLAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTI 152
>gi|157363878|ref|YP_001470645.1| RluA family pseudouridine synthase [Thermotoga lettingae TMO]
gi|157314482|gb|ABV33581.1| pseudouridine synthase, RluA family [Thermotoga lettingae TMO]
Length = 298
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 30/179 (16%)
Query: 63 TVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
TV+ LRLD ++ RI ISR+ VQ +I+ G V++N V+ K ++ VK GD+V +
Sbjct: 2 TVEKSEVNLRLDLFLLQRIPKAISRSFVQRAIKEGKVTVN-DVIRKPNYRVKFGDVVKIS 60
Query: 122 I-SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I S Q + E E I + ++YED++++VVNKPA M+VHP P + +GTLVN +L+HC
Sbjct: 61 IPSNAQSISIEPEPIQIGVIYEDEDIIVVNKPAGMIVHPIPSHNSGTLVNALLYHC---- 116
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFGNH 239
D + I G +RPGIVHRLDK TSG++VVAK + F +H
Sbjct: 117 ---------KDLKGI-----------GGELRPGIVHRLDKDTSGVMVVAK---NDFAHH 152
>gi|395786921|ref|ZP_10466648.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|423718160|ref|ZP_17692350.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
gi|395423219|gb|EJF89415.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|395426593|gb|EJF92720.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
Length = 341
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 95/167 (56%), Gaps = 24/167 (14%)
Query: 65 DTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
D A R+D W+S ++ SR+R+Q+ IR G + I+ VV + ++GG+ + +
Sbjct: 15 DESAKGQRIDQWLSKQLQADYSRSRLQALIRQGQIKIDNVVVLEPKIKLRGGENIQLNLP 74
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
L + E+IPLDI+YED++++VVNKPA +VVHP GN TGT+VN ++ HC
Sbjct: 75 PLLDAEPQGENIPLDILYEDNDIIVVNKPAGLVVHPGNGNTTGTMVNALIFHCG------ 128
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK TSG++VVAK
Sbjct: 129 -----------------HSLSGIGGVKRPGIVHRLDKDTSGVMVVAK 158
>gi|257082401|ref|ZP_05576762.1| pseudouridylate synthase [Enterococcus faecalis E1Sol]
gi|256990431|gb|EEU77733.1| pseudouridylate synthase [Enterococcus faecalis E1Sol]
Length = 301
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 3 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 60 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHA-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 147
>gi|328542559|ref|YP_004302668.1| RNA-pseudouridylate synthase, ribosomal large subunit D
[Polymorphum gilvum SL003B-26A1]
gi|326412305|gb|ADZ69368.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Polymorphum gilvum SL003B-26A1]
Length = 346
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 97/163 (59%), Gaps = 24/163 (14%)
Query: 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQP 127
AGK RLDA +++ + +SR RVQ+ IRSG V+++G + + + V G + + E +
Sbjct: 30 AGK-RLDAVLAAHLADLSRTRVQALIRSGEVTVDGGKIVEPKYRVNEGATLALGLPEPEE 88
Query: 128 LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQE 187
+ EDIPL +VYEDD+++V++KPA +VVHP GN TGTLVN ++ HC
Sbjct: 89 AEPKGEDIPLVVVYEDDDLIVIDKPAGLVVHPGAGNWTGTLVNALIRHCG---------- 138
Query: 188 AFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSGLLVVAK
Sbjct: 139 ------------DSLSGIGGVR-RPGIVHRLDKETSGLLVVAK 168
>gi|375088639|ref|ZP_09734977.1| RluA family pseudouridine synthase [Dolosigranulum pigrum ATCC
51524]
gi|374561604|gb|EHR32943.1| RluA family pseudouridine synthase [Dolosigranulum pigrum ATCC
51524]
Length = 303
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+E T+D + G RLD +S+ I +SR ++Q I G V +NG+ + V GD V
Sbjct: 5 QIELTIDQERG--RLDKVLSNLIAEVSRNQIQQLIAEGAVLVNGEKQLN-KYKVASGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + + A+ ++IPL+IVYED+++ VVNKP MVVHPA G+ GTLVN +L+H
Sbjct: 62 KITIPEPEEIEAKPQNIPLEIVYEDEDIAVVNKPQGMVVHPALGHPDGTLVNALLYHL-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ---------------------DNLSGING-KIRPGIVHRIDKDTSGLLMVAK 149
>gi|337282172|ref|YP_004621643.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 15912]
gi|335369765|gb|AEH55715.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 15912]
Length = 296
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SRA I+ G V +NG V K + VK GD++ + E++ + E
Sbjct: 11 RLDKALAD-LTPLSRAVANEQIKEGKVLVNG-TVKKAKYTVKEGDIIQYEVPEVEEVSYE 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 69 AEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTLVNALLYHI--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -KDL-------SGING-ELRPGIVHRIDKDTSGLLMVAK 143
>gi|90580377|ref|ZP_01236184.1| putative ribosomal large subunit pseudouridine synthase D
[Photobacterium angustum S14]
gi|90438679|gb|EAS63863.1| putative ribosomal large subunit pseudouridine synthase D [Vibrio
angustum S14]
Length = 324
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 95/175 (54%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++L TV +RLD I+ SR+R++ I +G+VS+NG VV K + GG+
Sbjct: 5 IELTNTVGENQLGMRLDQVIAQLYPDYSRSRIKDWILNGMVSVNGDVVKKPREKMMGGEE 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ +R A+DIPLDIVYEDD++LV+NKP VVHP G GT++N +LHHC
Sbjct: 65 LFIQAEIEDEVRWVAQDIPLDIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLHHC- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P+LA R GIVHRLDK T+GL+VVAK I
Sbjct: 124 -PSLAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTI 152
>gi|268319474|ref|YP_003293130.1| pseudouridine synthase, RluA family [Lactobacillus johnsonii
FI9785]
gi|262397849|emb|CAX66863.1| pseudouridine synthase, RluA family [Lactobacillus johnsonii
FI9785]
Length = 304
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 25/161 (15%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K RLD I+ +I +SR +++ + + +N + KVS+ V+ GD+++ TI ++PL
Sbjct: 13 KGRLDKVITEKITDLSRTKIKELVNDKNILVNNKA-EKVSYKVQSGDVIDVTIPPVKPLS 71
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
EAE++ LDIVYED +V+VVNKP MVVHP+ G+ TLVNG+L+H
Sbjct: 72 LEAENLHLDIVYEDSDVIVVNKPQGMVVHPSAGHPDHTLVNGLLYHT------------- 118
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL++AK
Sbjct: 119 ---RDLADSPE--------GFRPGIVHRIDKDTSGLLMIAK 148
>gi|227553528|ref|ZP_03983577.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|255972642|ref|ZP_05423228.1| pseudouridylate synthase [Enterococcus faecalis T1]
gi|255975694|ref|ZP_05426280.1| pseudouridylate synthase [Enterococcus faecalis T2]
gi|256762651|ref|ZP_05503231.1| pseudouridylate synthase [Enterococcus faecalis T3]
gi|256961775|ref|ZP_05565946.1| pseudouridylate synthase [Enterococcus faecalis Merz96]
gi|257079163|ref|ZP_05573524.1| pseudouridylate synthase [Enterococcus faecalis JH1]
gi|257085033|ref|ZP_05579394.1| pseudouridylate synthase [Enterococcus faecalis Fly1]
gi|257419447|ref|ZP_05596441.1| pseudouridylate synthase [Enterococcus faecalis T11]
gi|257422461|ref|ZP_05599451.1| pseudouridylate synthase [Enterococcus faecalis X98]
gi|294779380|ref|ZP_06744781.1| pseudouridine synthase, RluA family [Enterococcus faecalis PC1.1]
gi|384518748|ref|YP_005706053.1| RluA family pseudouridine synthase [Enterococcus faecalis 62]
gi|397700031|ref|YP_006537819.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
D32]
gi|430361833|ref|ZP_19426910.1| pseudouridylate synthase [Enterococcus faecalis OG1X]
gi|430368433|ref|ZP_19428174.1| pseudouridylate synthase [Enterococcus faecalis M7]
gi|227177333|gb|EEI58305.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|255963660|gb|EET96136.1| pseudouridylate synthase [Enterococcus faecalis T1]
gi|255968566|gb|EET99188.1| pseudouridylate synthase [Enterococcus faecalis T2]
gi|256683902|gb|EEU23597.1| pseudouridylate synthase [Enterococcus faecalis T3]
gi|256952271|gb|EEU68903.1| pseudouridylate synthase [Enterococcus faecalis Merz96]
gi|256987193|gb|EEU74495.1| pseudouridylate synthase [Enterococcus faecalis JH1]
gi|256993063|gb|EEU80365.1| pseudouridylate synthase [Enterococcus faecalis Fly1]
gi|257161275|gb|EEU91235.1| pseudouridylate synthase [Enterococcus faecalis T11]
gi|257164285|gb|EEU94245.1| pseudouridylate synthase [Enterococcus faecalis X98]
gi|294453509|gb|EFG21910.1| pseudouridine synthase, RluA family [Enterococcus faecalis PC1.1]
gi|323480881|gb|ADX80320.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
62]
gi|397336670|gb|AFO44342.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
D32]
gi|429512386|gb|ELA01994.1| pseudouridylate synthase [Enterococcus faecalis OG1X]
gi|429516189|gb|ELA05683.1| pseudouridylate synthase [Enterococcus faecalis M7]
Length = 301
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 3 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 60 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHA-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 147
>gi|19704707|ref|NP_604269.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296327673|ref|ZP_06870215.1| RluA family pseudouridine synthase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|19715021|gb|AAL95568.1| Ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296155204|gb|EFG95979.1| RluA family pseudouridine synthase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 319
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 103/172 (59%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V+++ +RLD ++S +I+ +R+ ++ I + V +N ++++K +K G+ +
Sbjct: 12 KFEFEVNSEYEGMRLDKYLSEQIEEATRSYLEKLIDNNFVKVNSKIINKNGRKLKLGEKI 71
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + + E E+IPL+IVYE+D+ +++NK MVVHPA GN TGTLVN +L++ +
Sbjct: 72 EVLIPEEENIDIEPENIPLNIVYENDDFILINKSYGMVVHPAYGNYTGTLVNALLYYTN- 130
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L+S N +IRPGI+HRLDK TSGL++VAK
Sbjct: 131 -NLSSVN----------------------GNIRPGIIHRLDKDTSGLILVAK 159
>gi|429765557|ref|ZP_19297842.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
gi|429186008|gb|EKY26971.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
Length = 315
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 30/177 (16%)
Query: 58 VQLEETV----DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113
+ +EE + + K G+ R+D ++S I+G SR+ +Q I V++N + + K ++ ++
Sbjct: 11 INMEEIIFNIDEEKVGQ-RIDKYLSEAIEGKSRSFIQGLIDDENVNVNDKKI-KSNYKLR 68
Query: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
D++ + E + L E + LDIVYED +V+++NK +VVHPAPGN TGTLVNGIL
Sbjct: 69 KNDVITVKLKEPEELNVLPEKMDLDIVYEDSDVIIINKSKGVVVHPAPGNYTGTLVNGIL 128
Query: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
HHC+ D+ S I+G IRPGIVHR+DK TSG+LV+AK
Sbjct: 129 HHCT----------------DL-------SGINGV-IRPGIVHRIDKDTSGILVIAK 161
>gi|154483515|ref|ZP_02025963.1| hypothetical protein EUBVEN_01219 [Eubacterium ventriosum ATCC
27560]
gi|149735425|gb|EDM51311.1| pseudouridine synthase, RluA family [Eubacterium ventriosum ATCC
27560]
Length = 301
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 104/173 (60%), Gaps = 28/173 (16%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + +R+D ++S + +SR+ +Q ++ + +N + V K ++ V+ D +N I
Sbjct: 7 VDEELFDIRIDRYLSELLPDVSRSFIQKLLKDNEILLNDKPV-KANYKVQPSDKININIP 65
Query: 124 ELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+P+ A AE+IPLDI+YEDD+ L+VNKP MVVHPAPG+ TGTLVNG+++HC
Sbjct: 66 --KPVEANIVAENIPLDIIYEDDDFLIVNKPKDMVVHPAPGHYTGTLVNGLMYHC----- 118
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ S+I+G +RPGIVHR+DK T+G L++ K +S
Sbjct: 119 -----------------KNHLSNINGV-LRPGIVHRIDKDTTGALIICKNDYS 153
>gi|339448356|ref|ZP_08651912.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
fructivorans KCTC 3543]
Length = 305
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SR+R I+ L+ +N + K + K GD++ I E +PL
Sbjct: 14 RLDKLVADHYEDLSRSRANELIKEHLILVN-EKKEKPKYKSKIGDLIQIAIPEPKPLDLT 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIPLDIVYEDD V+VVNKP MVVHPAPG+ TLVN +L+H L
Sbjct: 73 PQDIPLDIVYEDDQVIVVNKPQGMVVHPAPGHPDHTLVNALLYHTKL------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G ++RPGIVHR+DK TSGLL+VAK
Sbjct: 120 -----------SSING-TVRPGIVHRIDKDTSGLLMVAK 146
>gi|193212389|ref|YP_001998342.1| RluA family pseudouridine synthase [Chlorobaculum parvum NCIB 8327]
gi|193085866|gb|ACF11142.1| pseudouridine synthase, RluA family [Chlorobaculum parvum NCIB
8327]
Length = 349
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ ++R +VQ++I G V +NG+ V K ++ VK D ++ T L+P
Sbjct: 34 MRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPV-KSNYRVKSCDHIHLTF--LRPPAP 90
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+ I+YEDD+++V++K A MVVHPA GN TGTL N ILHH
Sbjct: 91 ELAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLG----------- 139
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DA+++ E +RPGIVHRLDK TSGL+++AK
Sbjct: 140 -KDADELDKTE----------MRPGIVHRLDKDTSGLIIIAK 170
>gi|312903470|ref|ZP_07762650.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0635]
gi|422689213|ref|ZP_16747325.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0630]
gi|310633346|gb|EFQ16629.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0635]
gi|315577834|gb|EFU90025.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0630]
Length = 310
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 12 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 69 VVTIPEPEVLDMIAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHA-- 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 127 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 156
>gi|256964973|ref|ZP_05569144.1| pseudouridylate synthase [Enterococcus faecalis HIP11704]
gi|256955469|gb|EEU72101.1| pseudouridylate synthase [Enterococcus faecalis HIP11704]
gi|295113102|emb|CBL31739.1| ribosomal large subunit pseudouridine synthase D [Enterococcus sp.
7L76]
Length = 301
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 3 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 60 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPNGTLVNALLHHA-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 147
>gi|419799995|ref|ZP_14325308.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
gi|385696494|gb|EIG26975.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
Length = 296
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SRA I+ G V +NG V K + VK GD++ + E++ + E
Sbjct: 11 RLDKALAD-LTPLSRAVANEQIKEGKVLVNG-AVKKAKYTVKEGDIIQYDVPEVEEVSYE 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 69 AEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTLVNALLYHV--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -KDL-------SGING-ELRPGIVHRIDKDTSGLLMVAK 143
>gi|428770178|ref|YP_007161968.1| ribosomal large subunit pseudouridine synthase D [Cyanobacterium
aponinum PCC 10605]
gi|428684457|gb|AFZ53924.1| ribosomal large subunit pseudouridine synthase D [Cyanobacterium
aponinum PCC 10605]
Length = 314
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 96/182 (52%), Gaps = 26/182 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q ++ + G +R+D W+ ID ISR+R+Q I G V +N QV +K GD V
Sbjct: 5 QYQQKLVVDKGGIRIDVWLGDNIDSISRSRLQKLISEGQVIVNQQVCESKKTILKTGDEV 64
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E IPLDI+YED+ +L++NKPA+ VVHPAPG++ GTLVN +L HC
Sbjct: 65 IVRIPPPVSSHLIPEAIPLDILYEDEYLLIINKPANFVVHPAPGHSQGTLVNALLSHC-- 122
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFGN 238
D + I G RPGIVHRLDK T+G +VVAK P +
Sbjct: 123 -----------PDLKGI-----------GGVERPGIVHRLDKDTTGAMVVAKT--EPVLH 158
Query: 239 HF 240
H
Sbjct: 159 HL 160
>gi|256263395|ref|ZP_05465927.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 2 str. 63/9]
gi|260565840|ref|ZP_05836323.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 1 str. 16M]
gi|265991692|ref|ZP_06104249.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|265995529|ref|ZP_06108086.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|384212006|ref|YP_005601089.1| RluA family pseudouridine synthase [Brucella melitensis M5-90]
gi|384409116|ref|YP_005597737.1| pseudouridine synthase [Brucella melitensis M28]
gi|260151213|gb|EEW86308.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 1 str. 16M]
gi|262766813|gb|EEZ12431.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|263002648|gb|EEZ15051.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|263093392|gb|EEZ17461.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 2 str. 63/9]
gi|326409663|gb|ADZ66728.1| pseudouridine synthase [Brucella melitensis M28]
gi|326539370|gb|ADZ87585.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M5-90]
Length = 334
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E D+ A RLD W+++ + +SR+RVQS I G V+I+G + ++ G +
Sbjct: 3 ELIADSDAAGKRLDQWLAAALGPELSRSRVQSLIADGHVTIDGAPARETKQKLREGMNIA 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN +++ C
Sbjct: 63 IVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYQCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
>gi|428310804|ref|YP_007121781.1| ribosomal large subunit pseudouridine synthase D [Microcoleus sp.
PCC 7113]
gi|428252416|gb|AFZ18375.1| ribosomal large subunit pseudouridine synthase D [Microcoleus sp.
PCC 7113]
Length = 315
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 100/173 (57%), Gaps = 30/173 (17%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+Q+EE D R+D ++S + +SR+R+Q + G V +N ++ + V+ GD
Sbjct: 6 LQVEEKDD------RIDRYLSQHLRDLSRSRIQQLLEQGQVQVNDKLCTSKKVTVQSGDR 59
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
++ TI E +PL + E IPLD++YEDD+++++NKPA +VVHPA G+ +GTLVN +L HC+
Sbjct: 60 ISITIPEAKPLDLQPEAIPLDVLYEDDSLIIINKPAGLVVHPAAGHESGTLVNALLAHCT 119
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LA G RPGIVHRLDK T+G + +AK
Sbjct: 120 --NLAG----------------------IGGVQRPGIVHRLDKDTTGAIAIAK 148
>gi|89895611|ref|YP_519098.1| hypothetical protein DSY2865 [Desulfitobacterium hafniense Y51]
gi|89335059|dbj|BAE84654.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 300
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ R+ G SR+ +Q I G + +NG K ++ V+ D + I + L+ E
Sbjct: 10 RLDVGVTERV-GKSRSFIQGLIEEGHILVNG-AARKANYKVRAMDQITVVIPPPRELKVE 67
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPL+++YED++VLVVNKP MVVHPAPG T T+VN +L+HC
Sbjct: 68 AENIPLEVLYEDEDVLVVNKPQGMVVHPAPGAWTKTMVNALLYHCR-------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G +RPGIVHR+DK TSGLLVVAK
Sbjct: 114 ---------NLSGINGV-LRPGIVHRIDKDTSGLLVVAK 142
>gi|254431057|ref|ZP_05044760.1| pseudouridylate synthase, 23S rRNA-specific [Cyanobium sp. PCC
7001]
gi|197625510|gb|EDY38069.1| pseudouridylate synthase, 23S rRNA-specific [Cyanobium sp. PCC
7001]
Length = 320
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 95/166 (57%), Gaps = 28/166 (16%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ ++ SRAR+Q I +G V +NG V + ++ GD V + +
Sbjct: 18 KPLPMRLDRWLVAQRPEQSRARIQKFIEAGYVRVNG-VTGRAKTPLRHGDRVEVWMPPPE 76
Query: 127 PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASS 184
PL A+ +PLD++YED +++V+NKPA + VHPAPGN GTLVNG+LHHC LP +
Sbjct: 77 PLPYLVAQAMPLDVLYEDAHLIVLNKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGI--- 133
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G +RPGIVHRLDK T+G +VVAK
Sbjct: 134 ----------------------GGELRPGIVHRLDKDTTGCIVVAK 157
>gi|406837585|ref|ZP_11097179.1| ribosomal large subunit pseudouridine synthase [Lactobacillus vini
DSM 20605]
Length = 306
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD I+ SR+++Q IR G +++N Q+V + VK GD++ +++ L +
Sbjct: 15 RLDKAIADFFPKYSRSQLQELIRQGNLTVNRQLVLP-KYQVKTGDLIELQPPKIKQLSLK 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IPL I+YED ++LVVNKP MVVHPAPG+ TLVN +L+HC L
Sbjct: 74 PEKIPLAIIYEDQDLLVVNKPQGMVVHPAPGHPDQTLVNALLYHCPL------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 121 -----------STING-TYRPGIVHRIDKDTSGLLMVAK 147
>gi|421527424|ref|ZP_15974026.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum ChDC F128]
gi|402256459|gb|EJU06939.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum ChDC F128]
Length = 314
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 105/176 (59%), Gaps = 24/176 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE V ++ +RLD ++S +I+ +R+ ++ I + V +N +V++K +K G+ +
Sbjct: 7 KLEFEVSSEYEGMRLDKYLSEQIEEATRSYLEKLIDNNFVKVNSKVITKNGRKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + + E E+IPLD++YE+++ +V+NK MVVHPA GN +GTLVN +L++ +
Sbjct: 67 EVFIPEEENIDIEPENIPLDVIYENEDFIVINKSYGMVVHPAYGNYSGTLVNALLYYTN- 125
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
L+S N +IRPGI+HRLDK TSGL++VAK F+
Sbjct: 126 -NLSSVN----------------------GNIRPGIIHRLDKDTSGLILVAKNNFA 158
>gi|125973425|ref|YP_001037335.1| ribosomal large subunit pseudouridine synthase D [Clostridium
thermocellum ATCC 27405]
gi|256004403|ref|ZP_05429384.1| pseudouridine synthase, RluA family [Clostridium thermocellum DSM
2360]
gi|281417627|ref|ZP_06248647.1| pseudouridine synthase, RluA family [Clostridium thermocellum JW20]
gi|385778659|ref|YP_005687824.1| RluA family pseudouridine synthase [Clostridium thermocellum DSM
1313]
gi|419722986|ref|ZP_14250122.1| pseudouridine synthase, RluA family [Clostridium thermocellum AD2]
gi|419724666|ref|ZP_14251725.1| pseudouridine synthase, RluA family [Clostridium thermocellum YS]
gi|125713650|gb|ABN52142.1| pseudouridine synthase, RluA family [Clostridium thermocellum ATCC
27405]
gi|255991687|gb|EEU01788.1| pseudouridine synthase, RluA family [Clostridium thermocellum DSM
2360]
gi|281409029|gb|EFB39287.1| pseudouridine synthase, RluA family [Clostridium thermocellum JW20]
gi|316940339|gb|ADU74373.1| pseudouridine synthase, RluA family [Clostridium thermocellum DSM
1313]
gi|380771885|gb|EIC05746.1| pseudouridine synthase, RluA family [Clostridium thermocellum YS]
gi|380781043|gb|EIC10705.1| pseudouridine synthase, RluA family [Clostridium thermocellum AD2]
Length = 303
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+DAW+ ++ SR+ +Q I G++ +NG+ V K ++ +K D + I E Q L
Sbjct: 13 IRIDAWLCGKVKDYSRSYIQKLINDGMILVNGKPV-KSNYKIKQNDEILARIPEPQVLDV 71
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
AEDI + I+YED++++VV+KP MVVHPA GN +GTLVN +L HC
Sbjct: 72 VAEDIDVPILYEDEHIIVVDKPKGMVVHPAAGNYSGTLVNALLKHCGTNL---------- 121
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G IRPGIVHR+DK TSG+LVVAK
Sbjct: 122 ------------SNINGI-IRPGIVHRIDKDTSGVLVVAK 148
>gi|424673064|ref|ZP_18110007.1| pseudouridine synthase, RluA family [Enterococcus faecalis 599]
gi|402352874|gb|EJU87710.1| pseudouridine synthase, RluA family [Enterococcus faecalis 599]
Length = 310
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 12 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 69 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSVGHPNGTLVNALLHHA-- 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 127 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 156
>gi|322389731|ref|ZP_08063278.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 903]
gi|321143570|gb|EFX39001.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 903]
Length = 296
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SRA I+ G V +NG V K + VK GD++ + E++ + E
Sbjct: 11 RLDKALAD-LTPLSRAVANEQIKEGKVLVNG-TVKKAKYTVKEGDIIQYEVPEVEEVSYE 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 69 AEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTLVNALLYHV--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -KDL-------SGING-ELRPGIVHRIDKDTSGLLMIAK 143
>gi|257090036|ref|ZP_05584397.1| pseudouridylate synthase [Enterococcus faecalis CH188]
gi|256998848|gb|EEU85368.1| pseudouridylate synthase [Enterococcus faecalis CH188]
Length = 301
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 3 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 60 VVTIPEPEVLDMIAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVNALLHHA-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 147
>gi|237740892|ref|ZP_04571373.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
4_1_13]
gi|229431189|gb|EEO41401.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
4_1_13]
Length = 314
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V ++ +RLD ++S +I+ +R+ ++ I + V IN +V++K +K G+ +
Sbjct: 7 KFEFEVSSEYEGMRLDKYLSKQIEEATRSYLEKLIDNNYVKINSKVINKNGRKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I + + + EAE+I LDIVYE+D+ +V+NK MVVHPA GN +GTLVN +L++ +
Sbjct: 67 EVSIPKEENIDIEAENISLDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNALLYYTNN 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 127 L-----------------------SSING-NIRPGIIHRLDKDTSGLILVAK 154
>gi|312130058|ref|YP_003997398.1| ribosomal large subunit pseudouridine synthase d [Leadbetterella
byssophila DSM 17132]
gi|311906604|gb|ADQ17045.1| ribosomal large subunit pseudouridine synthase D [Leadbetterella
byssophila DSM 17132]
Length = 347
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 28/174 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
L+ VD+ +RLD ++S + ISR R+Q++I + V +NG V K S+ VK D ++
Sbjct: 22 LQIVVDSGQSMMRLDKYLSHHLKNISRNRIQNAIDTDSVKVNGSSV-KSSYKVKPFDDIS 80
Query: 120 CTI--SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC- 176
+I S P ++IPLDIVYEDD+VL+VNK MVVHP GN GTLVN +++H
Sbjct: 81 ISIVRSSRIPKEVIPQNIPLDIVYEDDDVLLVNKAQEMVVHPGHGNPDGTLVNALVYHFG 140
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+LP S IRPG+VHR+DKGTSGLLV+AK
Sbjct: 141 NLP------------------------SARDGEIRPGLVHRIDKGTSGLLVIAK 170
>gi|313890534|ref|ZP_07824162.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
SPIN 20026]
gi|416850955|ref|ZP_11908296.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
LQ 940-04]
gi|313121051|gb|EFR44162.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
SPIN 20026]
gi|356740634|gb|EHI65857.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
LQ 940-04]
Length = 299
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 26/164 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K LRLD ++ D +SR++ I+ GLV +NGQ V K +NVK GD + + E +
Sbjct: 6 KEAGLRLDKALAETTD-LSRSQANEQIKKGLVLVNGQAV-KAKYNVKSGDNITYQLPEEE 63
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
L +AE++P+DI+YED ++ ++NK MVVHP+ G+++GTLVN +++H
Sbjct: 64 VLDYQAENLPIDIIYEDSDLAIINKAQGMVVHPSAGHSSGTLVNALMYHI---------- 113
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|72383396|ref|YP_292751.1| pseudouridylate synthase specific to ribosomal large subunit
[Prochlorococcus marinus str. NATL2A]
gi|72003246|gb|AAZ59048.1| ribosomal large subunit pseudouridine synthase D [Prochlorococcus
marinus str. NATL2A]
Length = 326
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 98/174 (56%), Gaps = 28/174 (16%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L E K +RLD W+ S+ SRA +Q I +G +NG+ K V+ GD++
Sbjct: 15 ELFEGEYKKPLPMRLDRWLVSQRAEQSRAHIQKFIEAGFARVNGKT-GKAKTPVRPGDII 73
Query: 119 NCTISELQPL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC- 176
+ +PL + E+I LDI+YEDD+++V+NK A + VHPAPGN +GTLVNG++HHC
Sbjct: 74 QLWVPPPEPLPYLKPEEIDLDILYEDDHLIVINKTAGIAVHPAPGNKSGTLVNGLIHHCP 133
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LP + G +RPGIVHRLDK T+G +VVAK
Sbjct: 134 DLPGI-------------------------GGKLRPGIVHRLDKDTTGCIVVAK 162
>gi|227824343|ref|ZP_03989175.1| pseudouridine synthase [Acidaminococcus sp. D21]
gi|226904842|gb|EEH90760.1| pseudouridine synthase [Acidaminococcus sp. D21]
Length = 311
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 101/172 (58%), Gaps = 26/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
++ E K LR D +++ +D +SR+ +Q + GLV+ G+ V K S+ VK GD+
Sbjct: 8 KVTEPAAEKDQGLRADCYLADVLD-LSRSSLQHDMEKGLVTKEGKPV-KASYKVKLGDVF 65
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I L AE E IPL I+YED++V+VVNKP MVVHPA GN TGTLVN +L+HC
Sbjct: 66 TVVIPPAVSLEAEPEPIPLAILYEDEDVIVVNKPRGMVVHPAAGNYTGTLVNALLYHC-- 123
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHRLDK TSG++V AK
Sbjct: 124 --------------KDL-------SGINGV-VRPGIVHRLDKDTSGVMVCAK 153
>gi|256846833|ref|ZP_05552288.1| pseudouridylate synthase [Fusobacterium sp. 3_1_36A2]
gi|256717799|gb|EEU31357.1| pseudouridylate synthase [Fusobacterium sp. 3_1_36A2]
Length = 316
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V ++ +RLD ++S +I+ +R+ ++ I + V IN +V++K +K G+ +
Sbjct: 7 KFEFEVSSEYEGMRLDKYLSKQIEEATRSYLEKLIDNNYVKINSKVINKNGRKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I + + + EAE+I LDIVYE+D+ +V+NK MVVHPA GN +GTLVN +L++ +
Sbjct: 67 EVSIPKEENIDIEAENISLDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNALLYYTNN 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 127 L-----------------------SSING-NIRPGIIHRLDKDTSGLILVAK 154
>gi|317968170|ref|ZP_07969560.1| pseudouridylate synthase, 23S RNA-specific [Synechococcus sp.
CB0205]
Length = 325
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 95/166 (57%), Gaps = 28/166 (16%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ ++ SRAR+Q I +G V +NG V + ++ D V + +
Sbjct: 18 KPLPMRLDRWLVAQRPEQSRARIQKFIDAGYVRVNG-VTGRAKTPLRLNDTVELWMPPPE 76
Query: 127 PLRAE-AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASS 184
PL +DIPLD++YED++++V+NKPA + VHPAPGN GTLVNG+LHHC LP +
Sbjct: 77 PLPYLIPQDIPLDVLYEDEHLIVLNKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGI--- 133
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G +RPGIVHRLDK T+G +VVAK
Sbjct: 134 ----------------------GGEMRPGIVHRLDKDTTGCIVVAK 157
>gi|422721981|ref|ZP_16778558.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2137]
gi|315027878|gb|EFT39810.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2137]
Length = 310
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 12 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 69 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSVGHPNGTLVNALLHHA-- 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 127 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 156
>gi|452974551|gb|EME74371.1| RNA-pseudouridine synthase YlyB [Bacillus sonorensis L12]
Length = 304
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 98/172 (56%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
E TV R+D +++ SR +VQ I+ V +N + V K ++ V+ GD+V
Sbjct: 3 HYEMTVQEDHKSERIDKYLTVMETDWSRTQVQQWIKEERVQVNDKAV-KANYKVQPGDVV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E +PL AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC
Sbjct: 62 IVDVPEPEPLDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 ------------------DD---LSGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|421597794|ref|ZP_16041336.1| pseudouridine synthase-like protein [Bradyrhizobium sp. CCGE-LA001]
gi|404270096|gb|EJZ34234.1| pseudouridine synthase-like protein [Bradyrhizobium sp. CCGE-LA001]
Length = 326
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 96/171 (56%), Gaps = 23/171 (13%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E V G RLD +++ + +SR+R+++ I +G VS+ V +++V GD +
Sbjct: 1 MEVVVGGDEGSARLDRVLAAHLTDLSRSRLKALILAGAVSLRASAVRDPAYHVASGDTIT 60
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E P + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTLVN ++ HC
Sbjct: 61 IDVPEASPAEPQGEDIALDIVFEDDDIIVINKPKGLVVHPAAGHETGTLVNALIAHCG-- 118
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK T+GL+VVAK
Sbjct: 119 ---------------------ASLSGIGGVRRPGIVHRLDKDTTGLMVVAK 148
>gi|168180134|ref|ZP_02614798.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|226948812|ref|YP_002803903.1| RluA family pseudouridine synthase [Clostridium botulinum A2 str.
Kyoto]
gi|182669142|gb|EDT81118.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|226841647|gb|ACO84313.1| pseudouridine synthase, RluA family [Clostridium botulinum A2 str.
Kyoto]
Length = 305
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 29/173 (16%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+Q+E+ D +RLD ++S + SR+ +Q I G V +N + K ++ +K D
Sbjct: 6 LQVEKEFDN----VRLDLYLSKIFEDKSRSYLQGIIDEGNVLVNNKE-KKRNYKLKVRDN 60
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ I E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTLVN +LHHC
Sbjct: 61 IEVNIPEPKLLQIEPEDINLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTLVNALLHHC- 119
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSG+LVVAK
Sbjct: 120 ---------------KDL-------SGINGVA-RPGIVHRIDKDTSGILVVAK 149
>gi|89891672|ref|ZP_01203175.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BBFL7]
gi|89516007|gb|EAS18671.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BBFL7]
Length = 349
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 96/166 (57%), Gaps = 37/166 (22%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE------ 124
LR+D ++ + I+ +R+++Q SI+ G V +N +VV K ++ VK GD +
Sbjct: 33 LRVDKYLMNFIENATRSKIQQSIKDGAVRVNDEVV-KSNYKVKAGDHIRVLFKHPPHENL 91
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
L P EDIPLDIVYEDD ++VVNKPA MVVHP GN +GTL+N ++HH
Sbjct: 92 LVP-----EDIPLDIVYEDDTLVVVNKPAGMVVHPGHGNYSGTLINALIHH--------- 137
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
F + + +S RPG+VHR+DK TSGLLVVAK
Sbjct: 138 ----------------FDNLPNNSSNRPGLVHRIDKDTSGLLVVAK 167
>gi|402488750|ref|ZP_10835557.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
gi|401812217|gb|EJT04572.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
Length = 341
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKV 108
+P AG + T D A + RLD W+++++ + SR+R+++ I+ G V + G+ V+
Sbjct: 3 DPFKQAAGNRKVLTADETA-EGRLDTWLTAQVAEEFSRSRIKALIKDGQVFLRGEPVTDP 61
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V+ GD T+ E + + EDI LDI++ED++V+V++KP+ +VVHP PGN TGTL
Sbjct: 62 QRKVRNGDSFEITLPEPEDPTPQGEDIRLDILHEDEDVIVISKPSGLVVHPGPGNWTGTL 121
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN +++HC + S I G RPGIVHRLDK T+G++VV
Sbjct: 122 VNALIYHCG----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVV 158
Query: 229 AK 230
AK
Sbjct: 159 AK 160
>gi|390630849|ref|ZP_10258823.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
gi|390483904|emb|CCF31171.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
Length = 305
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 97/170 (57%), Gaps = 26/170 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
EET+ RLD ++ + +R +V I G++ +NG K ++VK GD +
Sbjct: 3 EETLVITDQTGRLDKVVADAFEDYTRTQVTGWINDGVLKVNG-AEKKAKYSVKPGDEITF 61
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
T+ E + + EDIPLDIVYEDD++LVVNKP MVVHPA G+ +GTLVN ++ H L
Sbjct: 62 TVPEPVEIDLKPEDIPLDIVYEDDDLLVVNKPQGMVVHPALGHESGTLVNALMFHTPL-- 119
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 ----------------------STINGV-VRPGIVHRIDKDTSGLLMVAK 146
>gi|335047539|ref|ZP_08540560.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 110
str. F0139]
gi|333761347|gb|EGL38902.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 110
str. F0139]
Length = 292
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 93/161 (57%), Gaps = 27/161 (16%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K+R D ++S +I +SR +Q I+ LV +NG+ + K + ++ GD + +I + + +
Sbjct: 11 KIRCDVFLSEKISNLSRTSIQKLIKEKLVFVNGKNI-KPNVILEIGDEITVSIPDKKEIT 69
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
AEDI LDIVYEDD ++++NKP +MVVHPA GN TLVN +L+HC L + S
Sbjct: 70 LVAEDIALDIVYEDDYIIIINKPRNMVVHPAAGNEAHTLVNALLNHCKLSMINSE----- 124
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHRLDK T+GL+V AK
Sbjct: 125 ---------------------RPGIVHRLDKDTTGLIVCAK 144
>gi|403530188|ref|YP_006664717.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana RM-11]
gi|403232260|gb|AFR26003.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana RM-11]
Length = 334
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
++ D A RLD W++ + + +SR+R+Q+ IR G + I+GQ++ + +K M+
Sbjct: 4 QQITDEGALGQRLDQWLAKQYHNALSRSRLQALIREGHLKIDGQLIHEPKTKLKPNQMIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
TI L+ + E I LDI++EDD+V+V+NK A +VVHP GN TGTLVN +++HC
Sbjct: 64 LTIPILRDAKPSGEAIKLDILFEDDHVIVINKQAGLVVHPGNGNLTGTLVNALIYHCG-- 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK T+G++VVAK
Sbjct: 122 --------------------DSLSGIGGVK-RPGIVHRLDKNTTGIMVVAK 151
>gi|421144716|ref|ZP_15604623.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
gi|395488855|gb|EJG09703.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
Length = 314
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 24/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E V ++ +RLD ++S +I+ +R+ ++ I + V IN +V++K +K G+ +
Sbjct: 7 KFEFEVSSEYEGMRLDKYLSKQIEEATRSYLEKLIDNNYVKINSKVINKNGKKLKLGEKI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I + + + EAE+I LDIVYE+D+ +V+NK MVVHPA GN +GTLVN +L++ +
Sbjct: 67 EVSIPKEENIDIEAENISLDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNALLYYTNN 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 127 L-----------------------SSING-NIRPGIIHRLDKDTSGLILVAK 154
>gi|3915406|sp|O50310.1|Y723_CHLP8 RecName: Full=Uncharacterized RNA pseudouridine synthase Cpar_0723;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|2661852|emb|CAB06297.1| hypothetical protein [Prosthecochloris vibrioformis]
Length = 327
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ ++R +VQ++I G V +NG+ V K ++ VK D ++ T L+P
Sbjct: 12 MRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPV-KSNYRVKSCDHIHLTF--LRPPAP 68
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+ I+YEDD+++V++K A MVVHPA GN TGTL N ILHH
Sbjct: 69 ELAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLG----------- 117
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DA+++ E +RPGIVHRLDK TSGL+++AK
Sbjct: 118 -KDADELDKTE----------MRPGIVHRLDKDTSGLIIIAK 148
>gi|352684044|ref|YP_004896028.1| pseudouridine synthase [Acidaminococcus intestini RyC-MR95]
gi|350278698|gb|AEQ21888.1| pseudouridine synthase [Acidaminococcus intestini RyC-MR95]
Length = 318
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 101/172 (58%), Gaps = 26/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
++ E K LR D +++ +D +SR+ +Q + GLV+ G+ V K S+ VK GD+
Sbjct: 15 KVTEPAAEKDQGLRADCYLADVLD-LSRSSLQHDMEKGLVTKEGKPV-KASYKVKLGDVF 72
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I L AE E IPL I+YED++V+VVNKP MVVHPA GN TGTLVN +L+HC
Sbjct: 73 TVVIPPAVSLEAEPEPIPLAILYEDEDVIVVNKPRGMVVHPAAGNYTGTLVNALLYHC-- 130
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHRLDK TSG++V AK
Sbjct: 131 --------------KDL-------SGINGV-VRPGIVHRLDKDTSGVMVCAK 160
>gi|217964005|ref|YP_002349683.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HCC23]
gi|290893028|ref|ZP_06556017.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL J2-071]
gi|386008615|ref|YP_005926893.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes L99]
gi|386027223|ref|YP_005947999.1| putative 23S RNA-specific pseudouridine synthase D [Listeria
monocytogenes M7]
gi|404408287|ref|YP_006691002.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2376]
gi|422410090|ref|ZP_16487051.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL F2-208]
gi|217333275|gb|ACK39069.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HCC23]
gi|290557388|gb|EFD90913.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL J2-071]
gi|307571425|emb|CAR84604.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes L99]
gi|313608111|gb|EFR84172.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL F2-208]
gi|336023804|gb|AEH92941.1| putative 23S RNA-specific pseudouridine synthase D [Listeria
monocytogenes M7]
gi|404242436|emb|CBY63836.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2376]
Length = 302
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q ++SG +++NG++ +K ++ V+ GD ++ +
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKSGDITVNGEL-AKPNYKVQVGDEIHYEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|414155728|ref|ZP_11412038.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
gi|410872663|gb|EKS20604.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
Length = 296
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 96/159 (60%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SRA I+ G V +NG V K + VK GD++ + E+ + E
Sbjct: 11 RLDKALAD-LTPLSRAVANEQIKEGKVLVNG-TVKKAKYTVKEGDIIQYEVPEMVEISYE 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 69 AEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTLVNALLYHV--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -KDL-------SGING-ELRPGIVHRIDKDTSGLLMVAK 143
>gi|189499996|ref|YP_001959466.1| RluA family pseudouridine synthase [Chlorobium phaeobacteroides
BS1]
gi|189495437|gb|ACE03985.1| pseudouridine synthase, RluA family [Chlorobium phaeobacteroides
BS1]
Length = 346
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ +R +VQ +I V +NG+ V K ++ +K D + T L+P
Sbjct: 34 MRIDVYLAQQVENATRNKVQEAISEHRVRVNGKTV-KANYKIKSLDSIEITF--LRPPAP 90
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+DI+YED++++V+NK MVVHPA GN TGTL N ILHH
Sbjct: 91 ELAPEDIPVDIIYEDNDLMVINKAPGMVVHPAFGNWTGTLANAILHHLG----------- 139
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+DAE + E +RPGIVHRLDK TSGL++VAK
Sbjct: 140 -TDAEKLDTTE----------LRPGIVHRLDKNTSGLIIVAK 170
>gi|257087008|ref|ZP_05581369.1| pseudouridylate synthase [Enterococcus faecalis D6]
gi|256995038|gb|EEU82340.1| pseudouridylate synthase [Enterococcus faecalis D6]
Length = 301
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+ T+ T+ G R+D +S + SR+++Q ++ V++NG+ V + ++ V GD +
Sbjct: 3 QINVTIQTEKG--RIDKVLSEHLPNHSRSQIQQWLKEKHVTVNGETV-RANYKVTAGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+ GTLVN +LHH
Sbjct: 60 VVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSVGHPNGTLVNALLHHA-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S D+ +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------DHLSAINDV--------------VRPGIVHRIDKDTSGLLMVAK 147
>gi|408789072|ref|ZP_11200781.1| ribosomal large subunit pseudouridine synthase D [Rhizobium lupini
HPC(L)]
gi|408485046|gb|EKJ93391.1| ribosomal large subunit pseudouridine synthase D [Rhizobium lupini
HPC(L)]
Length = 340
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD+W++ + SR+R+++ I G VS+NG+ V++ V GD + T+ E +
Sbjct: 24 RLDSWLAGEVGSDFSRSRLKALIEQGAVSLNGKPVTEPKKKVHPGDRIEITMPEPEDPEP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPL++ YED++++V+ KPA +VVHP GN TGTLVN ++HHC
Sbjct: 84 KGEDIPLNVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ---------DSLSGIGGVK-RPGIVHRLDKETSGVMVVAK 160
>gi|289435186|ref|YP_003465058.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419459|ref|ZP_16496414.1| ribosomal large subunit pseudouridine synthase D [Listeria
seeligeri FSL N1-067]
gi|422422550|ref|ZP_16499503.1| ribosomal large subunit pseudouridine synthase D [Listeria
seeligeri FSL S4-171]
gi|289171430|emb|CBH27974.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632720|gb|EFR99690.1| ribosomal large subunit pseudouridine synthase D [Listeria
seeligeri FSL N1-067]
gi|313637301|gb|EFS02795.1| ribosomal large subunit pseudouridine synthase D [Listeria
seeligeri FSL S4-171]
Length = 303
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D ++ + G SR+ +Q ++SG +++NG++ +K ++ V+ GD + +
Sbjct: 8 IEESHARERIDKAVAE-LTGKSRSAIQIMLKSGDITVNGEI-AKPNYKVQVGDEIYLEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|419475322|ref|ZP_14015163.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14688]
gi|379561660|gb|EHZ26677.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14688]
Length = 295
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K H V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKHTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|149916264|ref|ZP_01904785.1| NAD(P) transhydrogenase subunit alpha [Roseobacter sp. AzwK-3b]
gi|149809924|gb|EDM69775.1| NAD(P) transhydrogenase subunit alpha [Roseobacter sp. AzwK-3b]
Length = 348
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 91/162 (56%), Gaps = 26/162 (16%)
Query: 72 RLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD +S + +SR R+ I G VS+NG V+ + GD + T+ + Q
Sbjct: 17 RLDKALSRDVPEDAALSRTRLARLIAEGAVSVNGTPVTDPKSRISEGDSIAITVPQAQDT 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
AE IPLDIV+EDD+++V++KPA MVVHPAPG+ GTLVN +LHHC
Sbjct: 77 HIAAESIPLDIVFEDDDLIVIDKPAGMVVHPAPGSPGGTLVNALLHHCG----------- 125
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S + G RPGIVHR+DK TSGLLVVAK
Sbjct: 126 -----------DTLSGVGGMK-RPGIVHRIDKDTSGLLVVAK 155
>gi|418055654|ref|ZP_12693708.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
1NES1]
gi|353209932|gb|EHB75334.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
1NES1]
Length = 348
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 99/174 (56%), Gaps = 28/174 (16%)
Query: 61 EETVDTKAGK----LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++T++ AG R+D W++ RI+ +SRAR+Q+ I G VS NG + + VK G
Sbjct: 12 QDTIELTAGPEDAGQRVDRWLADRIESLSRARIQALIHGGYVS-NGGTIREARAPVKPGV 70
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ P E E++PL IVYED +++V++KPA +VVHPA G+A+GTLVN ++ HC
Sbjct: 71 TYRIALPPPSPSEVEGENLPLAIVYEDADLIVIDKPAGLVVHPAAGHASGTLVNALIAHC 130
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSGLLV+AK
Sbjct: 131 G----------------------DSLSGIGGIK-RPGIVHRLDKDTSGLLVIAK 161
>gi|260434078|ref|ZP_05788049.1| ribosomal large subunit pseudouridine synthase D [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417906|gb|EEX11165.1| ribosomal large subunit pseudouridine synthase D [Silicibacter
lacuscaerulensis ITI-1157]
Length = 347
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 100/177 (56%), Gaps = 26/177 (14%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRI---DGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113
G + E V +A RLD +S + + +SR R+ I G V+++G++V+ V
Sbjct: 2 GTRTIEFVIAEAPPPRLDKALSRDVPADESLSRTRLARLIEEGAVAVDGKLVTDAKAKVA 61
Query: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
G V T+SE EDIPLDIV+ED +++V+NKPA +VVHPAPG+ +GTLVN +L
Sbjct: 62 EGAAVCITVSEADESHIGPEDIPLDIVHEDADLIVINKPAGLVVHPAPGSPSGTLVNALL 121
Query: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
HHC +D+S G RPGIVHR+DK TSGLLVVAK
Sbjct: 122 HHC---------------GDDLSG--------VGGVKRPGIVHRIDKDTSGLLVVAK 155
>gi|170759197|ref|YP_001786899.1| RluA family pseudouridine synthase [Clostridium botulinum A3 str.
Loch Maree]
gi|169406186|gb|ACA54597.1| pseudouridine synthase, RluA family [Clostridium botulinum A3 str.
Loch Maree]
Length = 305
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 29/173 (16%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+Q+E+ D +RLD +S + SR+ +Q I G V +N + K ++ +K GD
Sbjct: 6 LQVEKEFDN----VRLDLCLSKIFEDKSRSYLQGIIDEGNVLVNNKE-KKRNYKLKVGDN 60
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ I E + L+ E ED+ LD++YED +V+VVNKP MVVHPAPG +GTLVN +LHHC
Sbjct: 61 IEINIPEPKLLQIEPEDVKLDVIYEDKDVIVVNKPQEMVVHPAPGVYSGTLVNALLHHC- 119
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSG+LVVAK
Sbjct: 120 ---------------KDL-------SGINGVA-RPGIVHRIDKDTSGILVVAK 149
>gi|120437019|ref|YP_862705.1| ribosomal large subunit pseudouridine synthase D [Gramella forsetii
KT0803]
gi|117579169|emb|CAL67638.1| ribosomal large subunit pseudouridine synthase D [Gramella forsetii
KT0803]
Length = 354
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 94/162 (58%), Gaps = 29/162 (17%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LR+D ++ + I+ +R ++Q + +SG + +NG V K ++ VKGGD V E P
Sbjct: 35 LRVDKYLMNFIENATRNKIQKAAKSGNIYVNGDTV-KQNYKVKGGDTVQVMF-EHPPYEY 92
Query: 131 --EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
EDIPLDIVYEDD +LVVNK A MVVHP GN +GTL+N ++HH
Sbjct: 93 LLVPEDIPLDIVYEDDTLLVVNKQAGMVVHPGHGNYSGTLINALVHH------------- 139
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
F + + +S RPG+VHR+DK TSGLLVVAK
Sbjct: 140 ------------FDNLPNNSSDRPGLVHRIDKDTSGLLVVAK 169
>gi|451948094|ref|YP_007468689.1| ribosomal large subunit pseudouridine synthase D [Desulfocapsa
sulfexigens DSM 10523]
gi|451907442|gb|AGF79036.1| ribosomal large subunit pseudouridine synthase D [Desulfocapsa
sulfexigens DSM 10523]
Length = 329
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 27/184 (14%)
Query: 47 NNREPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVS 106
+N P + + L+ V + R D ++ I SR + +IR GL+ ++G+
Sbjct: 7 DNSRPAGSAGAIDLQ--VSAEFAGYRFDHFLVQLIPEASRNNLNQAIRLGLLLVDGKN-K 63
Query: 107 KVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 166
K S+ +K G+ ++ ++ E +PL ++IP D++YEDD++L+V+KP +VVHPA GN G
Sbjct: 64 KSSYKLKVGEQISGSLFEAEPLTLAPQNIPFDLLYEDDSLLIVSKPPGIVVHPAVGNPDG 123
Query: 167 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 226
TLVNG+L+HC ++I+D G +IRPGIVHRLDK TSG++
Sbjct: 124 TLVNGLLYHC----------------QEIAD--------VGDTIRPGIVHRLDKDTSGIM 159
Query: 227 VVAK 230
VVAK
Sbjct: 160 VVAK 163
>gi|390942944|ref|YP_006406705.1| RluA family pseudouridine synthase [Belliella baltica DSM 15883]
gi|390416372|gb|AFL83950.1| pseudouridine synthase, RluA family [Belliella baltica DSM 15883]
Length = 346
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 31/182 (17%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D K LR+D +++ RI +R +VQ +I +G V +NG+ V K ++ +K D + +
Sbjct: 25 IDKKQSLLRIDKFLTDRIANSTRNKVQVAIDNGHVLVNGKTV-KSNYKIKPLDEIKVYL- 82
Query: 124 ELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPT 180
E + +E E+IPLDI++ED+ +L++NKPA MVVHPA GN TGTLVNG++H+ + LP
Sbjct: 83 EKPVMHSEVIPEEIPLDIIFEDEYLLIINKPAGMVVHPAHGNWTGTLVNGLVHYFNQLPE 142
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK--VIFSPFGN 238
L G S RPG+VHR+DK TSGLLV+AK V + N
Sbjct: 143 LP------------------------GNSGRPGLVHRIDKDTSGLLVIAKSEVAMTDLAN 178
Query: 239 HF 240
F
Sbjct: 179 QF 180
>gi|251797854|ref|YP_003012585.1| pseudouridine synthase [Paenibacillus sp. JDR-2]
gi|247545480|gb|ACT02499.1| pseudouridine synthase, RluA family [Paenibacillus sp. JDR-2]
Length = 315
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 28/171 (16%)
Query: 62 ETVDTKAGKLRLDAWISSRI--DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E +AG+ R+D +++ + D ISR +VQ I+SG V +N V K ++ + GD V
Sbjct: 16 EAAPEQAGE-RIDKFVTDSLNEDSISRTQVQEWIKSGAVLVNQNTV-KPNYKLSSGDHVG 73
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E + AEDIPLDIVYED +V+V+NKP MVVHPAPG+++GT+VN +++HC
Sbjct: 74 IRVPEPEDAAIVAEDIPLDIVYEDADVIVINKPRGMVVHPAPGHSSGTVVNALMYHC--- 130
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+ AK
Sbjct: 131 -------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMAAK 160
>gi|88809823|ref|ZP_01125329.1| Pseudouridine synthase, RluD [Synechococcus sp. WH 7805]
gi|88786207|gb|EAR17368.1| Pseudouridine synthase, RluD [Synechococcus sp. WH 7805]
Length = 327
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 98/167 (58%), Gaps = 30/167 (17%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ S+ SRAR+Q I +GLV +NG+ K ++ GD V + +
Sbjct: 30 KPLPMRLDRWLVSQRREQSRARIQKFIDAGLVRVNGRT-GKAKTPLRQGDEVQLWMPPPE 88
Query: 127 PL---RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
PL + EA D LD+++ED++++V+NKPA + VHPAPGN GTLVNG+LHHC P L
Sbjct: 89 PLPYLKPEAMD--LDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHC--PDL-- 142
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 143 -------------------PGISG-KLRPGIVHRLDKDTTGCIVIAK 169
>gi|414152988|ref|ZP_11409315.1| Uncharacterized RNA pseudouridine synthase ylyB [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455370|emb|CCO07217.1| Uncharacterized RNA pseudouridine synthase ylyB [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 307
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
+ + K RLD +++ ISR+ +Q I +V+++ + V K +H +K G+ V +
Sbjct: 7 VIKPEHAKTRLDVFLAGVCQDISRSYIQKLIDEAMVTVDDRPV-KANHKLKAGEKVCLIV 65
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
L+ E E+IPLDI YED +++VVNKP MVVHPA G +GTLVN +L+HC
Sbjct: 66 PPAAELKVEPENIPLDIYYEDSHLIVVNKPRGMVVHPADGTVSGTLVNALLYHC------ 119
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHRLDK TSGLL+VAK
Sbjct: 120 ----------QDL-------SGINGV-MRPGIVHRLDKDTSGLLMVAK 149
>gi|383774169|ref|YP_005453236.1| pseudouridine synthase-like protein [Bradyrhizobium sp. S23321]
gi|381362294|dbj|BAL79124.1| pseudouridine synthase-like protein [Bradyrhizobium sp. S23321]
Length = 335
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 23/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE V+ G RLD +++ + +SR+R+++ I +G V++ + +++V GD +
Sbjct: 9 RLEVVVEGSEGSARLDRVLAAHLTDLSRSRLKALILAGAVTLKASAIRDPAYHVSSGDTI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E P + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTLVN ++ HC
Sbjct: 69 TIDVPEAVPAEPKGEDITLDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLVNALIAHCG- 127
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK T+GL+VVAK
Sbjct: 128 ----------------------TSLSGIGGVRRPGIVHRLDKDTTGLMVVAK 157
>gi|404482194|ref|ZP_11017421.1| RluA family pseudouridine synthase [Clostridiales bacterium
OBRC5-5]
gi|404344355|gb|EJZ70712.1| RluA family pseudouridine synthase [Clostridiales bacterium
OBRC5-5]
Length = 304
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ ++ SR+ +Q I+ G +NG+ V K ++ ++ GD+VN I + +PL
Sbjct: 16 RIDVFLAMNLESFSRSYIQDLIKKGKACVNGKDV-KSNYRLRDGDIVNLAIPKPEPLEIL 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+++NKP MVVHPA G+ +GTLVN +L+HC
Sbjct: 75 PENIPLDIVYEDDDVILINKPKGMVVHPAAGHYSGTLVNALLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ S I+G +RPGIVHR+D T+G+++ K
Sbjct: 120 -------KDNLSGINGV-LRPGIVHRIDMDTTGIIIACK 150
>gi|415886500|ref|ZP_11548280.1| Pseudouridylate synthase, 23S RNA-specific [Bacillus methanolicus
MGA3]
gi|387587187|gb|EIJ79510.1| Pseudouridylate synthase, 23S RNA-specific [Bacillus methanolicus
MGA3]
Length = 303
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 104/171 (60%), Gaps = 26/171 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+D +AG+ R+D ISS + SR++VQ I+ G V +NGQ V K ++ D + I
Sbjct: 9 LDEQAGE-RIDKLISSINEEWSRSQVQQWIKDGQVLVNGQKV-KTNYKCSLNDQIEIFIP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + L E++ LDI YED +V+VVNKP MVVHPAPG++TGTLVNG+L HC
Sbjct: 67 DPEELDVLPEEMDLDIYYEDHDVIVVNKPRGMVVHPAPGHSTGTLVNGLLAHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+D+ S I+G +RPGIVHR+DK TSGLL+VAK F+
Sbjct: 120 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAKNDFA 153
>gi|398822585|ref|ZP_10580964.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
gi|398226816|gb|EJN13059.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
Length = 326
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 23/171 (13%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E V G RLD +++R+ +SR+R+++ I +G VS+ V +++V GD +
Sbjct: 1 MEVVVAGDEGSARLDRVLAARLPDLSRSRLKALILAGAVSLRASAVRDPAYHVISGDTII 60
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E P + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTLVN ++ HC
Sbjct: 61 IDVPEAAPAEPKGEDIALDIVFEDDDIIVINKPKGLVVHPAAGHETGTLVNALIAHCG-A 119
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
TL S I G RPGIVHRLDK T+GL+VVAK
Sbjct: 120 TL---------------------SGIGGVR-RPGIVHRLDKDTTGLMVVAK 148
>gi|387927105|ref|ZP_10129784.1| Pseudouridylate synthase, 23S RNA-specific [Bacillus methanolicus
PB1]
gi|387589249|gb|EIJ81569.1| Pseudouridylate synthase, 23S RNA-specific [Bacillus methanolicus
PB1]
Length = 303
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 107/177 (60%), Gaps = 27/177 (15%)
Query: 59 QLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++E T+ D +AG R+D ISS + SR+++Q I+ G + +NGQ V K ++ D
Sbjct: 3 KMEHTILDEQAGG-RIDKLISSLNEEWSRSQIQQWIKDGQILVNGQKV-KTNYKCSLNDQ 60
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ I E + L E++ LDI YED +VLVVNKP MVVHPAPG+++GTLVNG++ HC
Sbjct: 61 IEIFIPEPEELDVIPEEMNLDIYYEDHDVLVVNKPKGMVVHPAPGHSSGTLVNGLMAHC- 119
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+D+ S I+G +RPGIVHR+DK TSGLL++AK FS
Sbjct: 120 ---------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAKNDFS 153
>gi|291550385|emb|CBL26647.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
torques L2-14]
Length = 304
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++ RI+ +SR+ +Q I+ + +N Q+ K ++ + GD + I + +PL +
Sbjct: 14 RIDKFLDGRIESLSRSYIQKLIKEKKILVN-QLPVKANYKLTTGDTIILQIPDPEPLDIQ 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YEDD++LVVNKP MVVHPAPG+ + TLVN +L+HC
Sbjct: 73 PENIPLDILYEDDDILVVNKPKGMVVHPAPGHYSHTLVNAVLYHCG-------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I+G IRPGIVHR+D T+G L++ K
Sbjct: 119 --------ENLSGINGV-IRPGIVHRIDMNTTGSLLICK 148
>gi|27382447|ref|NP_773976.1| pseudouridine synthase [Bradyrhizobium japonicum USDA 110]
gi|27355618|dbj|BAC52601.1| blr7336 [Bradyrhizobium japonicum USDA 110]
Length = 335
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 100/172 (58%), Gaps = 23/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE V G RLD +++R+ +SR+R+++ I +G VS+ V +++V GD +
Sbjct: 9 RLEVVVAGDEGSARLDRVLAARLPDLSRSRLKALILAGAVSLKASAVRDPAYHVSHGDTI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E P + E+I LDIV+EDD+++V+NKP +VVHPA G+ TGTLVN ++ HC
Sbjct: 69 IIDVPEAAPAEPKGEEIALDIVFEDDDIIVINKPRGLVVHPAAGHETGTLVNALIAHCG- 127
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
TL S I G RPGIVHRLDK T+GL+VVAK
Sbjct: 128 STL---------------------SGIGGVR-RPGIVHRLDKDTTGLMVVAK 157
>gi|205373291|ref|ZP_03226095.1| YlyB [Bacillus coahuilensis m4-4]
Length = 301
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E TV + R+D +S+ SR++VQ I+ G V +N + + ++ + D++
Sbjct: 3 RFEHTVTQEQVGERIDKVVSTINSDWSRSQVQQWIKDGHVLVNMEQ-KRTNYKSQASDVI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E + L EAED+ LD+ YED +V+VVNKP MVVHPAPG+ +GTLVNG++HHC
Sbjct: 62 TIEVPEAEVLDVEAEDLNLDVYYEDQDVIVVNKPKGMVVHPAPGHYSGTLVNGLMHHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|116873278|ref|YP_850059.1| ribosomal large subunit pseudouridine synthase [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116742156|emb|CAK21280.1| Ribosomal large subunit pseudouridine synthase [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 302
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD ++ I
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIHYEIR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|374582996|ref|ZP_09656090.1| pseudouridine synthase, RluA family [Desulfosporosinus youngiae DSM
17734]
gi|374419078|gb|EHQ91513.1| pseudouridine synthase, RluA family [Desulfosporosinus youngiae DSM
17734]
Length = 338
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 26/160 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++ + G SR+ +Q I V +NG + K ++ V+ GDM+ I + A
Sbjct: 50 IRLDVGVTD-VLGKSRSFIQGLIAGECVKVNG-FIKKANYKVRQGDMIEVMIPAPREAAA 107
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E E+IPL+I+YED++VLVVNKP MVVHPAPG TGT+VN +L+HC
Sbjct: 108 EPENIPLEILYEDEDVLVVNKPQGMVVHPAPGAWTGTMVNALLYHC-------------- 153
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G +RPGIVHR+DK TSG+LVVAK
Sbjct: 154 ---------KNLSGINGV-LRPGIVHRIDKDTSGILVVAK 183
>gi|347750588|ref|YP_004858153.1| RluA family pseudouridine synthase [Bacillus coagulans 36D1]
gi|347583106|gb|AEO99372.1| pseudouridine synthase, RluA family [Bacillus coagulans 36D1]
Length = 303
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 104/172 (60%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+++ T+ RLD +SS + SR++VQ I+ G +++NG+ K ++ ++ GD+V
Sbjct: 3 KMDHTILEHEANERLDKMVSSIREEWSRSQVQQWIKDGDITVNGKK-EKANYRLQTGDLV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E + E ED+ LDI YED +VLVVNKP MVVHP+ G+ TGTLVNG+++HC
Sbjct: 62 EIEVPEPELPDIEPEDLHLDIYYEDADVLVVNKPKGMVVHPSNGHFTGTLVNGLMYHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|441504479|ref|ZP_20986473.1| Ribosomal large subunit pseudouridine synthase D [Photobacterium
sp. AK15]
gi|441427946|gb|ELR65414.1| Ribosomal large subunit pseudouridine synthase D [Photobacterium
sp. AK15]
Length = 324
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++L TV LRLD I+ SR+R++ I +G+VS++G+ V K + GG+
Sbjct: 5 IELTNTVKDSQLGLRLDQVIAELYPDYSRSRIKEWILNGMVSVDGETVKKPRTKMMGGEA 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ T +R A+DIPLDIVYED+++LV+NKP VVHP G GT++N +LHHC
Sbjct: 65 LQVTAEIEDEVRWVAQDIPLDIVYEDEHILVINKPRDFVVHPGAGTPDGTVLNALLHHC- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P LA R GIVHRLDK T+GL+VVAK I
Sbjct: 124 -PELAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTI 152
>gi|187779872|ref|ZP_02996345.1| hypothetical protein CLOSPO_03468 [Clostridium sporogenes ATCC
15579]
gi|187773497|gb|EDU37299.1| pseudouridine synthase, RluA family [Clostridium sporogenes ATCC
15579]
Length = 305
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 99/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ + +RLD ++S + SR+ +Q I G V +N + K ++ +K GD + I
Sbjct: 8 VEKEFDNVRLDLYLSKIFEDKSRSYLQGIIDEGNVLVNNKE-KKRNYKLKVGDNIKVNIP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTLVN +L HC
Sbjct: 67 EPKLLQIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTLVNALLSHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G + RPGIVHR+DK TSG+LVVAK
Sbjct: 120 ---------KDL-------SGINGVA-RPGIVHRIDKDTSGILVVAK 149
>gi|229918562|ref|YP_002887208.1| RluA family pseudouridine synthase [Exiguobacterium sp. AT1b]
gi|229469991|gb|ACQ71763.1| pseudouridine synthase, RluA family [Exiguobacterium sp. AT1b]
Length = 303
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 26/161 (16%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K R+D W+S R + SR++VQ I++G + +NG V K ++ ++ GD V + E L
Sbjct: 11 KARIDKWVSDRGEW-SRSQVQEWIKTGALLVNGSAV-KANYKLQVGDEVEVNVPEAVELE 68
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
EDIPL+IV+ED++V+VVNK MVVHPA G+ +GTLVN +L+HC
Sbjct: 69 VLPEDIPLEIVFEDEDVIVVNKARGMVVHPAAGHTSGTLVNALLYHC------------- 115
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G RPGIVHR+DK T+GLL+VAK
Sbjct: 116 -------DD---LSGINGVK-RPGIVHRIDKDTTGLLMVAK 145
>gi|383753720|ref|YP_005432623.1| putative ribosomal large subunit pseudouridine synthase D
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365772|dbj|BAL82600.1| putative ribosomal large subunit pseudouridine synthase D
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 312
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 93/159 (58%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SR+ VQ I V ++G K + ++GG+ V + E +P+ E
Sbjct: 17 RLDVFVVEKCPELSRSHVQKLIEQAHVLVDG-AQRKANFKLRGGEAVQVALPEAEPISVE 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPLDI+YED +++VVNK MVVHPA G +GTLVN +LHHC
Sbjct: 76 PEDIPLDILYEDKDIIVVNKARGMVVHPASGVYSGTLVNALLHHC--------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHRLDK TSG++V AK
Sbjct: 121 -QDL-------SGING-EIRPGIVHRLDKDTSGVMVCAK 150
>gi|87123536|ref|ZP_01079387.1| Pseudouridine synthase, RluD [Synechococcus sp. RS9917]
gi|86169256|gb|EAQ70512.1| Pseudouridine synthase, RluD [Synechococcus sp. RS9917]
Length = 329
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 26/165 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ S+ SRAR+Q I +G V +NG+ K ++ GD V + +
Sbjct: 33 KPLPMRLDRWLVSQRSEQSRARIQKFIDAGFVRVNGKT-GKAKTPLRQGDAVQLWMPPPE 91
Query: 127 PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
PL + E + LD+++ED++++V+NKPA + VHPAPGN GTLVNG+LHHC P L
Sbjct: 92 PLPYLKPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHC--PDL---- 145
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 146 -----------------PGISG-KLRPGIVHRLDKDTTGCIVIAK 172
>gi|229829077|ref|ZP_04455146.1| hypothetical protein GCWU000342_01162 [Shuttleworthia satelles DSM
14600]
gi|229792240|gb|EEP28354.1| hypothetical protein GCWU000342_01162 [Shuttleworthia satelles DSM
14600]
Length = 306
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 34/165 (20%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV-----NCTISEL 125
LR+D +++ +DG SR +Q I GLV +NG + S+ ++ D + + ++EL
Sbjct: 15 LRIDRYLADHLDGQSRNSIQKLIEEGLVLVNGNA-CRASYKLQEKDQIFVSVPDAVLTEL 73
Query: 126 QPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
+P E IPLDI+YEDD +L+VNKP MVVHPAPG+ TGTLVN I++HC
Sbjct: 74 RP-----ERIPLDILYEDDQLLIVNKPKEMVVHPAPGHNTGTLVNAIMYHCG-------- 120
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+E S I+G IRPGIVHR+D T+G L+V K
Sbjct: 121 -------------KEL-SGING-EIRPGIVHRIDMNTTGSLIVCK 150
>gi|260435696|ref|ZP_05789666.1| pseudouridylate synthase, 23S rRNA-specific [Synechococcus sp. WH
8109]
gi|260413570|gb|EEX06866.1| pseudouridylate synthase, 23S rRNA-specific [Synechococcus sp. WH
8109]
Length = 333
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 96/165 (58%), Gaps = 26/165 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ S+ SRAR+Q I +G V +NG+ K ++ GD V + +
Sbjct: 33 KPLPMRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKT-GKAKTPLRQGDEVQLWMPPPE 91
Query: 127 PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
PL + E + LD+++EDD+++V+NKPA + VHPAPGN GTLVNG+LHHC P L
Sbjct: 92 PLSYLKPEPMDLDVLFEDDHLIVLNKPAGLTVHPAPGNKDGTLVNGLLHHC--PDL---- 145
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 146 -----------------PGISG-KLRPGIVHRLDKDTTGCIVIAK 172
>gi|326692704|ref|ZP_08229709.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
argentinum KCTC 3773]
Length = 308
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+DA ++++ SR + + ++SG V +NGQ V + S+ V GD+++ +QP
Sbjct: 15 RIDAILANQNLPYSRTVLANWVQSGEVLVNGQRVKR-SYKVAAGDVISIQPPAVQPTEIV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE +PLDIVYED ++LVVNKP MVVHPA G+ +GTLVNG+LHH L
Sbjct: 74 AEAMPLDIVYEDADLLVVNKPQGMVVHPAAGHTSGTLVNGLLHHAPL------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G RPGIVHR+D+ TSGLL+VAK
Sbjct: 121 -----------STING-EFRPGIVHRIDRDTSGLLMVAK 147
>gi|295099509|emb|CBK88598.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
cylindroides T2-87]
Length = 305
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 103/170 (60%), Gaps = 26/170 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E +D + K+R+D ++S +D SR RV+ + G + +NG K S+ ++ GD +
Sbjct: 5 EFIIDDENAKIRVDKAVASLLD-FSRKRVKDILDEGNILVNGSP-CKASYILQEGDHLLV 62
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I E+Q L E+IPL+IVYEDD+V+V+NKP MVVHPA G+ +GTLVN +++HC
Sbjct: 63 NIPEVQSLEVLPENIPLNIVYEDDDVIVINKPKGMVVHPAFGHVSGTLVNALMYHC---- 118
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLLVV K
Sbjct: 119 ------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLVVCK 148
>gi|372325255|ref|ZP_09519844.1| Ribosomal large subunit pseudouridine synthase D [Oenococcus
kitaharae DSM 17330]
gi|366984063|gb|EHN59462.1| Ribosomal large subunit pseudouridine synthase D [Oenococcus
kitaharae DSM 17330]
Length = 287
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 96/163 (58%), Gaps = 28/163 (17%)
Query: 73 LDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVS-HNVKGGDMVNCTISELQPLRAE 131
+D +S +I SR+R+ I+ V++NG+ S+ S + V D + T + +PL
Sbjct: 1 MDKVLSEKIADASRSRIDQLIKESYVTVNGE--SRASKYQVNPDDKIQVTFPQSKPLSLT 58
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYEDD++LVVNKPA MVVHP+ G+A TLVN +L H L
Sbjct: 59 AENIPLDIVYEDDDLLVVNKPAGMVVHPSAGHADHTLVNALLAHAPL------------- 105
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
S+I+G RPGIVHR+DK TSGLL+VAK F+
Sbjct: 106 -----------STING-EFRPGIVHRIDKDTSGLLMVAKNNFA 136
>gi|385260600|ref|ZP_10038744.1| pseudouridine synthase, RluA family [Streptococcus sp. SK140]
gi|385191150|gb|EIF38574.1| pseudouridine synthase, RluA family [Streptococcus sp. SK140]
Length = 296
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDIVTYQVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|333904809|ref|YP_004478680.1| RNA pseudouridylate synthase [Streptococcus parauberis KCTC 11537]
gi|333120074|gb|AEF25008.1| RNA pseudouridylate synthase [Streptococcus parauberis KCTC 11537]
gi|456370694|gb|EMF49590.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
parauberis KRS-02109]
gi|457095660|gb|EMG26131.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
parauberis KRS-02083]
Length = 295
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD I+ + +SR + +I++G+V +NGQ +K ++VK GD++
Sbjct: 2 ELIIKEAGS-RLDKAIADLTE-LSRGQANDAIKAGIVLVNGQA-AKAKYSVKAGDIITYE 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
I E + L +AEDIPLD+VYED+++ ++NKP MVVHP+ G+++GT+VN +L+
Sbjct: 59 IQEEEVLDYQAEDIPLDVVYEDEDLAIINKPQGMVVHPSAGHSSGTMVNALLYQI----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -----------KDL-------SGINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|363897267|ref|ZP_09323806.1| hypothetical protein HMPREF9624_00368 [Oribacterium sp. ACB7]
gi|361958764|gb|EHL12061.1| hypothetical protein HMPREF9624_00368 [Oribacterium sp. ACB7]
Length = 304
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 100/171 (58%), Gaps = 26/171 (15%)
Query: 65 DTKAGKLRLDAWISSR-IDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
D AGK RLD++++ + +R+ + I LV NG+ SK S +K GD +
Sbjct: 7 DVDAGK-RLDSFLAEKNTANYTRSFIGKMIEENLVLYNGKP-SKASTKIKTGDRIELFEK 64
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E +PL + E+IPL+IVYEDD+++V+NKP MVVHPAPG+ +GTLVN +L H
Sbjct: 65 EPEPLAVKGEEIPLEIVYEDDDLMVINKPRGMVVHPAPGHTSGTLVNAVLSHAG------ 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
E SSI+G +RPGIVHR+DK TSGL++V K FS
Sbjct: 119 ----------------ESLSSINGV-LRPGIVHRIDKDTSGLILVCKNDFS 152
>gi|407477639|ref|YP_006791516.1| hypothetical protein Eab7_1800 [Exiguobacterium antarcticum B7]
gi|407061718|gb|AFS70908.1| Hypothetical protein Eab7_1800 [Exiguobacterium antarcticum B7]
Length = 307
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 102/172 (59%), Gaps = 26/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E V R+D W++ + D SR++VQ +++G V ++G++V K ++ + G + +
Sbjct: 4 QNEWAVKANGATGRIDKWLAEQQDW-SRSQVQDWLKAGHVEVDGRIV-KPNYKMSGTEEI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E L E+IPLD+VYED +V+V+NKP MVVHPA G+ +GTLVN +LHHC
Sbjct: 62 LVRIPEAVELEVLPENIPLDVVYEDGDVIVINKPKGMVVHPAAGHVSGTLVNALLHHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------QDL-------SGINGVK-RPGIVHRIDKDTSGLLMVAK 149
>gi|335045072|ref|ZP_08538095.1| pseudouridine synthase, RluA family [Oribacterium sp. oral taxon
108 str. F0425]
gi|333758858|gb|EGL36415.1| pseudouridine synthase, RluA family [Oribacterium sp. oral taxon
108 str. F0425]
Length = 304
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 100/171 (58%), Gaps = 26/171 (15%)
Query: 65 DTKAGKLRLDAWISSR-IDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
D AGK RLD++++ + +R+ + I LV NG+ SK S +K GD +
Sbjct: 7 DVDAGK-RLDSFLAEKNTAKYTRSFIGKMIEENLVLYNGKP-SKASTKIKTGDRIELFEK 64
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E +PL + E+IPL+IVYEDD+++V+NKP MVVHPAPG+ +GTLVN +L H
Sbjct: 65 EPEPLAVKGEEIPLEIVYEDDDLMVINKPRGMVVHPAPGHTSGTLVNAVLSHAG------ 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
E SSI+G +RPGIVHR+DK TSGL++V K FS
Sbjct: 119 ----------------ESLSSINGV-LRPGIVHRIDKDTSGLILVCKNDFS 152
>gi|85816530|gb|EAQ37717.1| pseudouridine synthase, RluA family [Dokdonia donghaensis MED134]
Length = 347
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 96/162 (59%), Gaps = 29/162 (17%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL-QPLR 129
LR+D ++ + ++ +R ++Q + ++G + +N +VV K ++ VK GD+V
Sbjct: 31 LRVDKFLMNFVENATRNKIQKAAKNGSIQVNNKVV-KQNYKVKAGDVVRAMFEHPPHEFL 89
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEA 188
EDIPLDI+YEDD++LVVNKPA MVVHP GN +GTL+N ++HH +LP
Sbjct: 90 LTPEDIPLDIIYEDDDLLVVNKPAGMVVHPGHGNYSGTLINALIHHIDNLP--------- 140
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ +S RPG+VHR+DK TSGLLVVAK
Sbjct: 141 -----------------NNSSERPGLVHRIDKDTSGLLVVAK 165
>gi|126733181|ref|ZP_01748928.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
CCS2]
gi|126716047|gb|EBA12911.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
CCS2]
Length = 341
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 86/147 (58%), Gaps = 23/147 (15%)
Query: 84 ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYED 143
+SR+R+ I G VS++G VV+ H + G +V T++ + EDIPLD+V+ED
Sbjct: 32 LSRSRLAKLIAEGAVSVDGAVVTDPRHRIAEGSVVEVTVAMAEESHIVGEDIPLDVVFED 91
Query: 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSS 203
D+++VVNKPA MVVHPAPG GTLVN ++HHC E S
Sbjct: 92 DDLIVVNKPAGMVVHPAPGTPNGTLVNALIHHCG----------------------ETLS 129
Query: 204 SISGASIRPGIVHRLDKGTSGLLVVAK 230
+ G RPGIVHR+DK T+GLLV AK
Sbjct: 130 GVGGMK-RPGIVHRIDKETTGLLVAAK 155
>gi|329116866|ref|ZP_08245583.1| pseudouridine synthase, RluA family [Streptococcus parauberis NCFD
2020]
gi|326907271|gb|EGE54185.1| pseudouridine synthase, RluA family [Streptococcus parauberis NCFD
2020]
Length = 295
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD I+ + +SR + +I++G+V +NGQ +K ++VK GD++ I E + L +
Sbjct: 11 RLDKAIADLTE-LSRGQANDAIKAGIVLVNGQA-AKAKYSVKAGDIITYEIQEEEVLDYQ 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPLD+VYED+++ ++NKP MVVHP+ G+++GT+VN +L+
Sbjct: 69 AEDIPLDVVYEDEDLAIINKPQGMVVHPSAGHSSGTMVNALLYQI--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -KDL-------SGINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|256847299|ref|ZP_05552745.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coleohominis 101-4-CHN]
gi|256715963|gb|EEU30938.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coleohominis 101-4-CHN]
Length = 308
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 96/159 (60%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ + +SR++++ I G V++N Q V K ++++ GD+V + Q + E
Sbjct: 17 RIDKQLATLLSDVSRSQIKKWIEDGNVTVNKQSV-KPKYHLQAGDIVQVIPEQPQKIDLE 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPL+IVYEDD+VLVVNKP MVVHP+ G+ TLVN +L+HC L
Sbjct: 76 PENIPLEIVYEDDDVLVVNKPQGMVVHPSAGHPNHTLVNALLYHCPL------------- 122
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 123 -----------SHING-EYRPGIVHRIDKDTSGLLMVAK 149
>gi|110639847|ref|YP_680057.1| ribosomal large subunit pseudouridine synthase D [Cytophaga
hutchinsonii ATCC 33406]
gi|110282528|gb|ABG60714.1| ribosomal large subunit pseudouridine synthase D [Cytophaga
hutchinsonii ATCC 33406]
Length = 348
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 98/167 (58%), Gaps = 29/167 (17%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D ++ SRI +R+R+Q I V +N + +K S+ V+ GD++ TIS P R
Sbjct: 34 MRIDKFLMSRIQYATRSRIQYGIEIDSVKVNDKS-TKASYKVRPGDVI--TISLPHPPRE 90
Query: 131 EA---EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQE 187
+ EDIPLDIVYEDD +L+VNK MVVHPA GN TGTLVN + +H
Sbjct: 91 DVLIPEDIPLDIVYEDDQILIVNKKPGMVVHPAHGNWTGTLVNALAYHF----------- 139
Query: 188 AFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
E + ++G IRPG++HR+DK TSGLLV+AK ++
Sbjct: 140 -----------ENLPTHVNG-KIRPGLIHRIDKDTSGLLVIAKTDYA 174
>gi|424714718|ref|YP_007015433.1| Uncharacterized RNA pseudouridine synthase YlyB [Listeria
monocytogenes serotype 4b str. LL195]
gi|424013902|emb|CCO64442.1| Uncharacterized RNA pseudouridine synthase YlyB [Listeria
monocytogenes serotype 4b str. LL195]
Length = 304
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD ++ +
Sbjct: 9 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIHYEVR 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 67 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 149
>gi|78213965|ref|YP_382744.1| ribosomal large subunit pseudouridine synthase D [Synechococcus sp.
CC9605]
gi|78198424|gb|ABB36189.1| Pseudouridine synthase, RluD [Synechococcus sp. CC9605]
Length = 333
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 96/165 (58%), Gaps = 26/165 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ S+ SRAR+Q I +G V +NG+ K ++ GD V + +
Sbjct: 33 KPLPMRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKT-GKAKTPLRQGDEVQLWMPPPE 91
Query: 127 PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
PL + E + LD+++EDD+++V+NKPA + VHPAPGN GTLVNG+LHHC P L
Sbjct: 92 PLPYLKPEPMDLDVLFEDDHLIVLNKPAGLTVHPAPGNKDGTLVNGLLHHC--PDL---- 145
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 146 -----------------PGISG-KLRPGIVHRLDKDTTGCIVIAK 172
>gi|319898406|ref|YP_004158499.1| ribosomal large subunit pseudouridine synthase D [Bartonella
clarridgeiae 73]
gi|319402370|emb|CBI75909.1| ribosomal large subunit pseudouridine synthase D [Bartonella
clarridgeiae 73]
Length = 335
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D W++ + G ISR+R+Q+ IR G + I+GQ++ + +K ++ I R
Sbjct: 16 RIDQWLAKQYKGEISRSRLQTLIREGHLKIDGQLIKEPKTKLKSNQIIELIIPAPNDARP 75
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ E + LDI +EDD+V+V+NKPA +VVHP GN TGTLVN +++HCS
Sbjct: 76 QGEALALDIFFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCS------------- 122
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++V+AK
Sbjct: 123 ---------DSLSGIGGIK-RPGIVHRLDKDTSGVMVIAK 152
>gi|406027009|ref|YP_006725841.1| pseudouridine synthase D [Lactobacillus buchneri CD034]
gi|405125498|gb|AFS00259.1| pseudouridine synthase D [Lactobacillus buchneri CD034]
Length = 302
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 92/159 (57%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD IS ISR+R ++ I + +NG+ V K + VK GD + + P+ E
Sbjct: 12 RLDKVISELDSSISRSRAKNLIDDQHLKVNGEPV-KPKYQVKSGDKIQVDSVQPTPISLE 70
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+VVNKP MVVHP+PG+ TLVN +L+H L
Sbjct: 71 PENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHPDHTLVNALLYHSPL------------- 117
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 118 -----------STING-EFRPGIVHRIDKDTSGLLMVAK 144
>gi|240850017|ref|YP_002971410.1| ribosomal large subunit pseudouridine synthase D [Bartonella
grahamii as4aup]
gi|240267140|gb|ACS50728.1| ribosomal large subunit pseudouridine synthase D [Bartonella
grahamii as4aup]
Length = 334
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 100/174 (57%), Gaps = 28/174 (16%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+++ D A RLD W++ + + SR+R+Q+ IR G + I+GQ + + ++ ++
Sbjct: 3 IQKITDEGALGQRLDQWLAKQYHNVFSRSRLQTLIREGYLKIDGQFIKEPKTKLRPKQII 62
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ +L+ AE I LDI++EDD+++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 ELAMPDLRDAEPSAEAIALDILFEDDHIIVINKPAGLVVHPGNGNWTGTLVNALIYHC-- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVVAK 230
+S+S G RPGIVHRLDK TSG+++VAK
Sbjct: 121 -----------------------GNSLSGIGGVKRPGIVHRLDKNTSGVMIVAK 151
>gi|77406381|ref|ZP_00783442.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae H36B]
gi|77175005|gb|EAO77813.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae H36B]
Length = 296
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ K +RLD ++ + +SR++ I+ G+V +NGQV K + V+ GD + I
Sbjct: 3 ITIKVAGVRLDKALADNSE-LSRSQANEEIKKGIVLVNGQV-KKAKYTVQEGDRITFDIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + L +AE+IPLDI+Y+DD+V VVNKP MVVHP+ G+++GTLVN +++H
Sbjct: 61 KKEVLDYQAENIPLDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ---------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|241896496|ref|ZP_04783792.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
gi|241870218|gb|EER73969.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
Length = 304
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 26/170 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
EE++ + RLD ++ +R ++ I G++++NG+ K + V GD+++
Sbjct: 3 EESLTITDQEGRLDKVVAEAFTDYTRTQMSKWIDDGILTVNGET-KKAKYKVHAGDVISF 61
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
+ E L + E++PLDIVYEDD++LVVNKP MVVHPA G+ GTLVN +++H L
Sbjct: 62 VVPEPVVLDIKPENLPLDIVYEDDDLLVVNKPQGMVVHPAAGHPNGTLVNALMYHTEL-- 119
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 ----------------------SSINGV-IRPGIVHRIDKDTSGLLMVAK 146
>gi|358067453|ref|ZP_09153932.1| hypothetical protein HMPREF9333_00813 [Johnsonella ignava ATCC
51276]
gi|356694369|gb|EHI56031.1| hypothetical protein HMPREF9333_00813 [Johnsonella ignava ATCC
51276]
Length = 299
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD++++S G SR+ +Q I+ G + +N + SK S+ V+ GD++ ++ + + +
Sbjct: 14 RLDSYVNSLGLGFSRSYIQKLIKDGSLLVNA-LASKSSYKVETGDIITFSVPDEEEIEII 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A+DIPLDI YED+++LVVNKP MVVHPA G T TLVN +L+HC SD
Sbjct: 73 AQDIPLDIYYEDEDMLVVNKPKDMVVHPAAGRYTSTLVNALLYHCG---------NNLSD 123
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I +RPGIVHR+DK T+GLL++ K
Sbjct: 124 MNSI--------------LRPGIVHRIDKDTTGLLLICK 148
>gi|46908075|ref|YP_014464.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes serotype 4b str. F2365]
gi|47094208|ref|ZP_00231922.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 4b H7858]
gi|226224446|ref|YP_002758553.1| hypothetical protein Lm4b_01859 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826115|ref|ZP_05231116.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-194]
gi|254852749|ref|ZP_05242097.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL R2-503]
gi|254931987|ref|ZP_05265346.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HPB2262]
gi|300763844|ref|ZP_07073841.1| RluA family ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes FSL N1-017]
gi|386732583|ref|YP_006206079.1| hypothetical protein MUO_09460 [Listeria monocytogenes 07PF0776]
gi|404281456|ref|YP_006682354.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2755]
gi|404287272|ref|YP_006693858.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750196|ref|YP_006673662.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes ATCC 19117]
gi|405753070|ref|YP_006676535.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2378]
gi|405756004|ref|YP_006679468.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2540]
gi|406704627|ref|YP_006754981.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes L312]
gi|417315489|ref|ZP_12102165.1| hypothetical protein LM1816_11407 [Listeria monocytogenes J1816]
gi|417317939|ref|ZP_12104540.1| hypothetical protein LM220_09240 [Listeria monocytogenes J1-220]
gi|424823604|ref|ZP_18248617.1| Pseudouridylate synthase [Listeria monocytogenes str. Scott A]
gi|46881345|gb|AAT04641.1| ribosomal large subunit pseudouridine synthase, RluA family
[Listeria monocytogenes serotype 4b str. F2365]
gi|47017415|gb|EAL08234.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 4b H7858]
gi|225876908|emb|CAS05617.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606073|gb|EEW18681.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL R2-503]
gi|293583538|gb|EFF95570.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HPB2262]
gi|293595355|gb|EFG03116.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-194]
gi|300515580|gb|EFK42630.1| RluA family ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes FSL N1-017]
gi|328466193|gb|EGF37350.1| hypothetical protein LM1816_11407 [Listeria monocytogenes J1816]
gi|328473565|gb|EGF44402.1| hypothetical protein LM220_09240 [Listeria monocytogenes J1-220]
gi|332312284|gb|EGJ25379.1| Pseudouridylate synthase [Listeria monocytogenes str. Scott A]
gi|384391341|gb|AFH80411.1| hypothetical protein MUO_09460 [Listeria monocytogenes 07PF0776]
gi|404219396|emb|CBY70760.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes ATCC 19117]
gi|404222270|emb|CBY73633.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2378]
gi|404225204|emb|CBY76566.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2540]
gi|404228091|emb|CBY49496.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2755]
gi|404246201|emb|CBY04426.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361657|emb|CBY67930.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes L312]
Length = 303
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD ++ +
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIHYEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|121533717|ref|ZP_01665544.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
gi|121307708|gb|EAX48623.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
Length = 309
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 26/166 (15%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
D GK RLD ++ R+ +SR +Q I +G V++NG+ K ++ + D V + E
Sbjct: 15 DVDKGK-RLDLFLVERLPELSRTHIQRIIAAGEVTVNGKA-GKANYKLAPADYVTIRLPE 72
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
+P +AE I LDI+YED++++V+NKP MVVHPA GN GTLVN +L HC
Sbjct: 73 PKPAEIKAEAISLDILYEDEDIIVINKPRGMVVHPAAGNYEGTLVNALLRHC-------- 124
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G S RPGIVHRLDK TSG+++VAK
Sbjct: 125 ---------------DRLSGINGVS-RPGIVHRLDKDTSGVMMVAK 154
>gi|16803883|ref|NP_465368.1| hypothetical protein lmo1843 [Listeria monocytogenes EGD-e]
gi|47097693|ref|ZP_00235203.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 1/2a F6854]
gi|254829161|ref|ZP_05233848.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL N3-165]
gi|254912401|ref|ZP_05262413.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936728|ref|ZP_05268425.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes F6900]
gi|255027649|ref|ZP_05299635.1| hypothetical protein LmonocytFSL_17157 [Listeria monocytogenes FSL
J2-003]
gi|284802289|ref|YP_003414154.1| hypothetical protein LM5578_2045 [Listeria monocytogenes 08-5578]
gi|284995431|ref|YP_003417199.1| hypothetical protein LM5923_1996 [Listeria monocytogenes 08-5923]
gi|386044151|ref|YP_005962956.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes 10403S]
gi|386047496|ref|YP_005965828.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes J0161]
gi|386050820|ref|YP_005968811.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL R2-561]
gi|386054098|ref|YP_005971656.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes Finland 1998]
gi|404284339|ref|YP_006685236.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2372]
gi|404411144|ref|YP_006696732.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC5850]
gi|404413922|ref|YP_006699509.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC7179]
gi|405758894|ref|YP_006688170.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2479]
gi|16411297|emb|CAC99921.1| lmo1843 [Listeria monocytogenes EGD-e]
gi|47013931|gb|EAL04954.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 1/2a F6854]
gi|258601571|gb|EEW14896.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL N3-165]
gi|258609325|gb|EEW21933.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes F6900]
gi|284057851|gb|ADB68792.1| hypothetical protein LM5578_2045 [Listeria monocytogenes 08-5578]
gi|284060898|gb|ADB71837.1| hypothetical protein LM5923_1996 [Listeria monocytogenes 08-5923]
gi|293590383|gb|EFF98717.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345534487|gb|AEO03928.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes J0161]
gi|345537385|gb|AEO06825.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes 10403S]
gi|346424666|gb|AEO26191.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL R2-561]
gi|346646749|gb|AEO39374.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes Finland 1998]
gi|404230970|emb|CBY52374.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC5850]
gi|404233841|emb|CBY55244.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2372]
gi|404236776|emb|CBY58178.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2479]
gi|404239621|emb|CBY61022.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC7179]
Length = 303
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD ++ +
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIHYEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|408789810|ref|ZP_11201453.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
florum 2F]
gi|408520959|gb|EKK20973.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
florum 2F]
Length = 303
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ +SR+RVQ I +G ++++ Q K ++ K G ++ I +P+ +
Sbjct: 14 RLDKLVAAEFSDLSRSRVQQLIATGAITVSEQS-HKANYQPKPGATISIEIPTPEPIDVQ 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E +PL IVYEDD VLVV+KP MVVHPAPG+ TLVN IL+H LP
Sbjct: 73 PEPLPLAIVYEDDQVLVVDKPQGMVVHPAPGHPNHTLVNAILYHTKLP------------ 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 121 ------------GING-EIRPGIVHRIDKDTSGLLMVAK 146
>gi|359788929|ref|ZP_09291894.1| pseudouridine synthase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255234|gb|EHK58162.1| pseudouridine synthase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 331
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 95/169 (56%), Gaps = 24/169 (14%)
Query: 63 TVDTKAGKLRLDAWISSRID-GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
T A LRLD W+++ + SR RVQ+ IR G V + G VV++ + GD V
Sbjct: 5 TAGPDAAGLRLDQWLAAALGPDFSRNRVQALIRQGAVRVGGAVVNEPKRKMVSGDDVALE 64
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E +P EDIPLDI++EDD ++V+NKP +VVHP GN TGTLVN ++HHC
Sbjct: 65 LPEPEPAEPVGEDIPLDILFEDDQLIVLNKPPGLVVHPGAGNWTGTLVNALIHHCG---- 120
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 121 ------------------DSLSGIGGVR-RPGIVHRLDKDTSGVMVVAK 150
>gi|392303781|emb|CCI70144.1| ribosomal large subunit pseudouridine synthase D [Paenibacillus
polymyxa M1]
Length = 334
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 105/174 (60%), Gaps = 25/174 (14%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
G LE T D+ K R+D +I+ + +SR+++Q I +G V +NG V K ++ + GD
Sbjct: 32 GESLEWTADSGNVKTRIDKYIAEEMKEVSRSQIQLWIGNGRVLVNGTAV-KANYKLAEGD 90
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ ++ E + + E+IPLD+VYED +V+V+NK +VVHPAPG+++GTLVN +++HC
Sbjct: 91 HIVLSVPEPESVDIMPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHSSGTLVNALMYHC 150
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+ AK
Sbjct: 151 ----------------HDL-------SGING-ELRPGIVHRIDKDTSGLLMAAK 180
>gi|359412538|ref|ZP_09205003.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
gi|357171422|gb|EHI99596.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
Length = 305
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
VD K +R+D ++S + SR+ +Q I + +N ++ K ++ +K D + I
Sbjct: 7 VVDEKDQGIRIDKYLSEVFNDKSRSFIQGLIEKENIKVNNKI-PKSNYKIKSSDEIEVII 65
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + L + EDIP+ I+YED +++VVNK MVVHPAPGN GTLVN +L HC+
Sbjct: 66 DEPEILNVDPEDIPIGILYEDKDIIVVNKEQGMVVHPAPGNYNGTLVNALLFHCT----- 120
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ SSI+G +RPGIVHR+DK TSG+LVVAK
Sbjct: 121 -----------DL-------SSINGV-VRPGIVHRIDKDTSGVLVVAK 149
>gi|332522697|ref|ZP_08398949.1| pseudouridine synthase, RluA family [Streptococcus porcinus str.
Jelinkova 176]
gi|332313961|gb|EGJ26946.1| pseudouridine synthase, RluA family [Streptococcus porcinus str.
Jelinkova 176]
Length = 299
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 102/160 (63%), Gaps = 26/160 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LRLD +++ D +SR++ I+ GLV +NGQVV K ++VK GD + + E + L
Sbjct: 10 LRLDKALANVTD-LSRSQANEQIKKGLVLVNGQVV-KAKYSVKSGDEITYQLPEEEILDY 67
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+AE++P+DI+YED ++ +VNK MVVHP+ G+++GTLVN +++H
Sbjct: 68 KAENLPIDIIYEDSDLAIVNKAQGMVVHPSAGHSSGTLVNALMYHI-------------- 113
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 --KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|392376177|ref|YP_003208010.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
gi|258593870|emb|CBE70211.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
Length = 314
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 27/176 (15%)
Query: 56 AGVQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKG 114
+G ++ E + D AG LRLD ++S+ G+ R+++Q I++G V ++G+ K S
Sbjct: 2 SGDEIRELIADISAGGLRLDRYLST-ATGLPRSQIQRLIKAGRVLVDGRC-PKASAIAHP 59
Query: 115 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 174
G ++ +I QP E IPLDI+YED ++LV+NKPA +VVHPAPG+ +GTLV+ IL+
Sbjct: 60 GQQISLSIPPPQPSTLTPEPIPLDILYEDTDMLVLNKPAGLVVHPAPGHHSGTLVHAILY 119
Query: 175 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
HC P L +E RPGIVHRLDK TSG++VVAK
Sbjct: 120 HC--PDLPGIGEER----------------------RPGIVHRLDKETSGVMVVAK 151
>gi|149187050|ref|ZP_01865357.1| pseudouridine synthase D large subunit [Erythrobacter sp. SD-21]
gi|148829339|gb|EDL47783.1| pseudouridine synthase D large subunit [Erythrobacter sp. SD-21]
Length = 318
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 90/159 (56%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ G+SR RV+ I G+V I G+ S V G+ + +PL
Sbjct: 16 RLDKALAD-ATGLSRERVKGLIADGVVEIAGKAARSASAKVAEGERYFIALPPPEPLETV 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A+DIPLD+V+ED +LVVNKPA MVVHPA GN GTLVN +LHHC+
Sbjct: 75 AQDIPLDVVFEDAYLLVVNKPAGMVVHPAAGNPDGTLVNALLHHCA-------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G + RPGIVHR+DK TSGLLVVAK
Sbjct: 121 --------GRLSGINGVA-RPGIVHRIDKDTSGLLVVAK 150
>gi|433449188|ref|ZP_20412052.1| 23S rRNA-specific pseudouridylate synthase [Weissella ceti NC36]
gi|429538702|gb|ELA06740.1| 23S rRNA-specific pseudouridylate synthase [Weissella ceti NC36]
Length = 304
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ D ++R++V + G + +NG+ K ++VK GD + TI E L +
Sbjct: 14 RLDKVLAEHFDDLTRSQVGTLNTDGNILVNGEN-KKQKYSVKPGDEIVVTIPEPVELDVK 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPL+IVYEDD+V+VVNKP MVVHPA G+ +GTLVN +++H +L
Sbjct: 73 PENIPLEIVYEDDDVIVVNKPQGMVVHPALGHPSGTLVNALMYHTTL------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 -----------SSINGV-IRPGIVHRIDKDTSGLLMVAK 146
>gi|331001807|ref|ZP_08325329.1| hypothetical protein HMPREF0491_00191 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412781|gb|EGG92164.1| hypothetical protein HMPREF0491_00191 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 304
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++S ++ SR+ +Q I+ G +I G+ + K ++ ++ GD+V I + +PL
Sbjct: 16 RIDVFLSKNLESFSRSYIQDLIKKGKATIGGKTI-KANYRLREGDIVALAIPKPEPLEIL 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYED++V++VNKP MVVHPA G+ +GTLVN +L+HC
Sbjct: 75 PENIPLDIVYEDNDVILVNKPKGMVVHPAAGHYSGTLVNALLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ S I+G +RPGIVHR+D T+G+++V K
Sbjct: 120 -------KDNLSGINGV-LRPGIVHRIDMDTTGIIIVCK 150
>gi|89075039|ref|ZP_01161480.1| putative ribosomal large subunit pseudouridine synthase D
[Photobacterium sp. SKA34]
gi|89049126|gb|EAR54691.1| putative ribosomal large subunit pseudouridine synthase D
[Photobacterium sp. SKA34]
Length = 324
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++L TV +RLD I+ SR+R++ I +G+VS+NG VV K + GG+
Sbjct: 5 IELTNTVGENQLGMRLDQVIAQLYPDYSRSRIKDWILNGMVSVNGDVVKKPREKMMGGEE 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ +R A+DIPLDIVYEDD++LV+NKP VVHP G GT++N +LH+C
Sbjct: 65 LFIQAEIEDEVRWVAQDIPLDIVYEDDDILVINKPRDFVVHPGAGTPDGTILNALLHYC- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P+LA R GIVHRLDK T+GL+VVAK I
Sbjct: 124 -PSLAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTI 152
>gi|304437216|ref|ZP_07397176.1| ribosomal large subunit pseudouridine synthase D [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304369708|gb|EFM23373.1| ribosomal large subunit pseudouridine synthase D [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 300
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 29/177 (16%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ +AG+ RLD ++ ++ +SR+ Q + G V+++G+ K + + GG+ V CTI
Sbjct: 5 ISDQAGE-RLDVFLVRQLPTLSRSYAQRLVAEGHVTVDGER-RKANFKLSGGESVACTIP 62
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + AE+IPL+++YED +++V+NKP MVVHPA G TGTLVN +LHHC
Sbjct: 63 PAEAVEIRAENIPLNVLYEDADIIVINKPRGMVVHPAAGVYTGTLVNALLHHC------- 115
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFGNHF 240
SD I+ D +RPGIVHRLDK TSG++V AK + +HF
Sbjct: 116 ------SDLSGINGD-----------LRPGIVHRLDKDTSGVMVAAK---NDMAHHF 152
>gi|374324826|ref|YP_005077955.1| RNA pseudouridine synthase ylyb [Paenibacillus terrae HPL-003]
gi|357203835|gb|AET61732.1| RNA pseudouridine synthase ylyb [Paenibacillus terrae HPL-003]
Length = 323
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 106/174 (60%), Gaps = 25/174 (14%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
G LE T ++ K R+D +I+ + +SR+++Q I +G V +NG + K ++ + GD
Sbjct: 21 GEFLEWTAESGDAKTRIDKYIAEEMKDVSRSQIQLWIVNGRVLVNGTAI-KANYKLAEGD 79
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++ ++ E + + E+IPLD+VYED +V+V+NK +VVHPAPG+++GTLVN +++HC
Sbjct: 80 RISLSVPEPESVDIVPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHSSGTLVNALMYHC 139
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+ AK
Sbjct: 140 ----------------HDL-------SGING-ELRPGIVHRIDKDTSGLLMAAK 169
>gi|255022986|ref|ZP_05294972.1| hypothetical protein LmonocyFSL_05005 [Listeria monocytogenes FSL
J1-208]
gi|422809924|ref|ZP_16858335.1| Ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-208]
gi|378751588|gb|EHY62176.1| Ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-208]
Length = 302
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD ++ +
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIHYEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|451940248|ref|YP_007460886.1| ribosomal large subunit pseudouridine synthase D [Bartonella
australis Aust/NH1]
gi|451899635|gb|AGF74098.1| ribosomal large subunit pseudouridine synthase D [Bartonella
australis Aust/NH1]
Length = 334
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 24/172 (13%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
++E D A R+D W++ R +SR+R+Q+ IR G + I+GQ++ + ++ ++
Sbjct: 3 IQEITDEGAIGRRIDQWLAERYQSELSRSRLQTLIREGHLKIDGQLIRESKTKLRPNQII 62
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I L R +E I LD+++ED++++V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 ELVIPALSDARPGSEAIALDVLFEDEHIIVINKPAGLVVHPGHGNWTGTLVNALIYHCG- 121
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G RPGIVHRLDK TSG++V+AK
Sbjct: 122 ---------------------DSLSGINGIK-RPGIVHRLDKNTSGVMVIAK 151
>gi|374849516|dbj|BAL52529.1| ribosomal large subunit pseudouridine synthase D [uncultured
Chloroflexi bacterium]
Length = 307
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S ++ SR R+Q I G V +NG VV+K H + GD V + P
Sbjct: 16 RLDRFLSQQLTEFSRTRLQGLIEDGFVRVNGLVVTKNGHKLAFGDRVEVRVPPPAPSSLI 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IP+++++E+++V+V+NKPA +VVHPA G+ GTLV+ +LHH D
Sbjct: 76 PEAIPIEVLFENEDVVVINKPAGLVVHPAAGHDHGTLVHALLHH-------------LPD 122
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E I +E RPGIVHRLDKGTSGL++VA+
Sbjct: 123 LEGIGGEE-----------RPGIVHRLDKGTSGLMIVAR 150
>gi|319403704|emb|CBI77289.1| ribosomal large subunit pseudouridine synthase D [Bartonella
rochalimae ATCC BAA-1498]
Length = 333
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D W++ + G +SR+R+Q+ IR G + I+GQ++ + +K ++ TI +
Sbjct: 14 RIDQWLAKQYKGELSRSRLQTLIREGYLKIDGQLIKEPKTKLKSNQIIELTIPTPNEAQP 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ E + LDI++ED++++V+NKPA +VVHP GN TGTLVNG+++HC
Sbjct: 74 QGEALVLDILFEDNHIIVINKPAGLVVHPGNGNWTGTLVNGLIYHC-------------- 119
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++V+AK
Sbjct: 120 --------RDSLSGIGGIK-RPGIVHRLDKDTSGVMVIAK 150
>gi|227529323|ref|ZP_03959372.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
vaginalis ATCC 49540]
gi|227350751|gb|EEJ41042.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
vaginalis ATCC 49540]
Length = 305
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 102/172 (59%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+D+ A R+D ++ + ISR+++Q I G V++NG+ V K + + GD V
Sbjct: 4 ELKLTIDS-AMTGRIDKELAHHLTDISRSQLQKWIEDGNVTVNGEKV-KPKYKLVVGDRV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ Q + E E+IPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+H L
Sbjct: 62 VVQPKKPQKIDLEPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPNHTLVNALLYHSPL 121
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G RPGIVHR+DK TSGLL++AK
Sbjct: 122 ------------------------STING-EFRPGIVHRIDKDTSGLLMIAK 148
>gi|410724119|ref|ZP_11363318.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
gi|410602405|gb|EKQ56885.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
Length = 305
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 100/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ K + R+D ++S ++ SR+ VQ I + +N ++ K ++ VK D + ++S
Sbjct: 8 VEEKDKETRIDKYLSEILEDKSRSYVQGLIEKYSIKVNNKI-PKSNYKVKTKDEIEISLS 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L + EDI L+I+YED +++VVNK MVVHPAPGN GTLVN +L HC
Sbjct: 67 EPEVLNVDPEDISLNILYEDKDIVVVNKEQGMVVHPAPGNYNGTLVNALLFHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSG+LVVAK
Sbjct: 120 ---------KDL-------SSINGI-VRPGIVHRIDKDTSGVLVVAK 149
>gi|310642966|ref|YP_003947724.1| RNA pseudouridine synthase ylyb [Paenibacillus polymyxa SC2]
gi|309247916|gb|ADO57483.1| Uncharacterized RNA pseudouridine synthase ylyB [Paenibacillus
polymyxa SC2]
Length = 323
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 105/174 (60%), Gaps = 25/174 (14%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
G LE T D+ K R+D +I+ + +SR+++Q I +G V +NG V K ++ + GD
Sbjct: 21 GESLEWTADSGNVKTRIDKYIAEEMKEVSRSQIQLWIGNGRVLVNGTAV-KANYKLAEGD 79
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ ++ E + + E+IPLD+VYED +V+V+NK +VVHPAPG+++GTLVN +++HC
Sbjct: 80 HIVLSVPEPESVDIMPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHSSGTLVNALMYHC 139
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+ AK
Sbjct: 140 ----------------HDL-------SGING-ELRPGIVHRIDKDTSGLLMAAK 169
>gi|253996250|ref|YP_003048314.1| RluA family pseudouridine synthase [Methylotenera mobilis JLW8]
gi|253982929|gb|ACT47787.1| pseudouridine synthase, RluA family [Methylotenera mobilis JLW8]
Length = 368
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 99/171 (57%), Gaps = 29/171 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ + G LRLD + + SR+R+QS I+SGLV+++G+ S V GG+ V+ +
Sbjct: 16 TISSDLGGLRLDVALQRLLPEHSRSRLQSWIKSGLVTVDGKA-STAKTKVWGGEKVSVDV 74
Query: 123 SELQPLRAE-AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
RA A+DIPLDIVYEDD++LVVNKPA MVVHPA GN GTL+N +L H P L
Sbjct: 75 QVKPESRAFIAQDIPLDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALLFHA--PQL 132
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
D+ R GIVHRLDK TSGLLVVAK +
Sbjct: 133 -----------HDVP--------------RAGIVHRLDKETSGLLVVAKTL 158
>gi|306825452|ref|ZP_07458792.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432390|gb|EFM35366.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 299
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I++G V +NGQV K + V+ GD+V +
Sbjct: 3 IKIERGGLRLDKALSD-LTELSRSLANEQIKAGQVLVNGQV-KKAKYTVQEGDIVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLDIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|417857857|ref|ZP_12502914.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens F2]
gi|338823861|gb|EGP57828.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens F2]
Length = 340
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD+W+++ + G +SR+R+++ I G V +NG+ V++ V D + + E +
Sbjct: 24 RLDSWLATEVGGDLSRSRLKALIEQGAVFLNGKPVTEPKKKVHPQDRIEIVMPEPEDPEP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPLD+ YED++++V+ KPA +VVHP GN TGTLVN ++HHC
Sbjct: 84 KGEDIPLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ---------DSLSGIGGVK-RPGIVHRLDKETSGVMVVAK 160
>gi|433446181|ref|ZP_20410240.1| pseudouridine synthase, RluA family protein [Anoxybacillus
flavithermus TNO-09.006]
gi|432000477|gb|ELK21371.1| pseudouridine synthase, RluA family protein [Anoxybacillus
flavithermus TNO-09.006]
Length = 303
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 102/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T++ + R+D I+ + SR++VQ ++ G V +NG+ V K ++ D V
Sbjct: 3 QIQLTIEEQHDGERIDKVIAELNEQWSRSQVQQWLKEGRVLVNGKAV-KPNYKCHVDDEV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I + +PL E E IPLDI YED +VLVVNKP MVVHPAPG+ GTLVN +L HC
Sbjct: 62 VISIPDPEPLDVEPEPIPLDIYYEDADVLVVNKPRGMVVHPAPGHMHGTLVNALLAHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 120 --------------QDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 149
>gi|160914264|ref|ZP_02076485.1| hypothetical protein EUBDOL_00274 [Eubacterium dolichum DSM 3991]
gi|158433891|gb|EDP12180.1| pseudouridine synthase, RluA family [Eubacterium dolichum DSM 3991]
Length = 303
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++S ++ +SR+R+ S I G + +NG+V+ + + VK D + + L A
Sbjct: 16 RIDKYLSMVVEDLSRSRIASLIEEGSILVNGEVI-RAKYKVKPADHITAAFEDEMALEAA 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E + LDI YED +V+V+NKP +VVHPA GN +GTLVNG+L+HC
Sbjct: 75 PEKMELDIRYEDHDVIVINKPKGIVVHPANGNQSGTLVNGLLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK T+GLL+VAK
Sbjct: 120 -KDL-------SGINGV-LRPGIVHRIDKDTTGLLIVAK 149
>gi|254994200|ref|ZP_05276390.1| hypothetical protein LmonocytoFSL_15395 [Listeria monocytogenes FSL
J2-064]
Length = 296
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD ++ +
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIHYEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|350272994|ref|YP_004884302.1| pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
gi|348597836|dbj|BAL01797.1| pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
Length = 307
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 95/165 (57%), Gaps = 28/165 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLDA+++++ + ++R+ I G V ++G+ K S + GG+ V + QP
Sbjct: 15 RLDAFLAAQAENLTRSAAARLIEEGRVLVDGKRPVK-SLRLTGGETVTVELPNPQPTEVR 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPLD+VYED +V+VVNKP +VVHPAPG+ GTLVN +LHHC
Sbjct: 74 PEDIPLDVVYEDGDVIVVNKPKGLVVHPAPGHPDGTLVNALLHHC--------------- 118
Query: 192 AEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVVAKVIFS 234
SS+S G +RPGIVHR+D+ TSGL++ AK F+
Sbjct: 119 ----------GSSLSGIGGVLRPGIVHRIDRDTSGLIIAAKNDFA 153
>gi|336113719|ref|YP_004568486.1| RluA family pseudouridine synthase [Bacillus coagulans 2-6]
gi|335367149|gb|AEH53100.1| pseudouridine synthase, RluA family [Bacillus coagulans 2-6]
Length = 303
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+++ T+ RLD +SS + SR++VQ I+ G +++NG+ K ++ + GD+V
Sbjct: 3 KMDHTILEHEANERLDKIVSSIREEWSRSQVQQWIKEGDITVNGKK-EKANYRCQAGDLV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E + E ED+ LDI YED +VLVVNKP MVVHP+ G+ TGTLVNG+++HC
Sbjct: 62 EIEVPEPELPDIEPEDLHLDIYYEDADVLVVNKPKGMVVHPSNGHFTGTLVNGLMYHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|325283365|ref|YP_004255906.1| pseudouridine synthase, RluA family [Deinococcus proteolyticus MRP]
gi|324315174|gb|ADY26289.1| pseudouridine synthase, RluA family [Deinococcus proteolyticus MRP]
Length = 319
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 100/174 (57%), Gaps = 23/174 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q +T AG RLDA +++ + G SR++V I +G V + G+ +K SH ++GG+ +
Sbjct: 5 QQTQTYTATAG--RLDA-VAAELTGESRSQVALWIAAGRVEVEGKAATKASHKLRGGEAL 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ + L + E +PLD++YEDD ++ VNKP MV HPAPG +GTLVN +L L
Sbjct: 62 HISPPPPADLSVQPEQVPLDVLYEDDALIAVNKPPGMVTHPAPGVVSGTLVNALLGRLEL 121
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P Q++ D S A RPGIVHRLDK TSG++VVAK +
Sbjct: 122 P------QQSDHD--------------SPAGYRPGIVHRLDKDTSGVIVVAKTV 155
>gi|194336853|ref|YP_002018647.1| RluA family pseudouridine synthase [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309330|gb|ACF44030.1| pseudouridine synthase, RluA family [Pelodictyon
phaeoclathratiforme BU-1]
Length = 349
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ +R +VQ +I G V +N V K ++ +K D++ T L+P
Sbjct: 34 MRIDQYLTQQVENATRNKVQEAIEEGRVLVNENRV-KSNYRIKSCDVIEMTF--LRPPAP 90
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E AE+IP++I+YED +++VVNK A MVVHPA GN TGTL N ILHH +
Sbjct: 91 ELTAENIPIEIIYEDCDLMVVNKKAGMVVHPAFGNWTGTLANAILHHIGM---------- 140
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DAE++ A +RPGIVHRLDK TSGL++VAK
Sbjct: 141 --DAEELDQ----------AELRPGIVHRLDKNTSGLIIVAK 170
>gi|331701446|ref|YP_004398405.1| RluA family pseudouridine synthase [Lactobacillus buchneri NRRL
B-30929]
gi|329128789|gb|AEB73342.1| pseudouridine synthase, RluA family [Lactobacillus buchneri NRRL
B-30929]
Length = 302
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 92/159 (57%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD IS ISR+R ++ I + ING+ V K + VK GD + + P+ E
Sbjct: 12 RLDKVISELDSSISRSRAKNLIDDQHLKINGEPV-KPKYQVKSGDKIQVDSVQPTPISLE 70
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E++PLDIVYEDD+V+VVNKP MVVHP+PG+ TLVN +L+H L
Sbjct: 71 PENMPLDIVYEDDDVIVVNKPQGMVVHPSPGHPDHTLVNALLYHSPL------------- 117
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 118 -----------STING-EFRPGIVHRIDKDTSGLLMVAK 144
>gi|227823294|ref|YP_002827266.1| ribosomal large subunit pseudouridine synthase D [Sinorhizobium
fredii NGR234]
gi|227342295|gb|ACP26513.1| putative ribosomal large subunit pseudouridine synthase D
[Sinorhizobium fredii NGR234]
Length = 352
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 99/182 (54%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKV 108
+P G + T D A RLDA+++ + G SR R+++ I G VSING V +
Sbjct: 13 DPFKQATGNRKVLTADENAAG-RLDAFLTEALSGEFSRNRIKALIEQGAVSINGVTVLEP 71
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V GD T+ + + EDIP+D++YEDD+++V+ KPA +VVHP GN TGTL
Sbjct: 72 KRKVHPGDRFEITLPAPEDPEPKGEDIPIDVLYEDDDLIVLVKPAGLVVHPGAGNWTGTL 131
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHC + S I G RPGIVHRLDK TSG++VV
Sbjct: 132 VNALIHHCG----------------------DSLSGIGGVR-RPGIVHRLDKETSGVMVV 168
Query: 229 AK 230
AK
Sbjct: 169 AK 170
>gi|395244673|ref|ZP_10421628.1| Pseudouridine synthase [Lactobacillus hominis CRBIP 24.179]
gi|394483026|emb|CCI82636.1| Pseudouridine synthase [Lactobacillus hominis CRBIP 24.179]
Length = 305
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 96/161 (59%), Gaps = 25/161 (15%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K RLD +++ ID +SR RVQ I + +N +VV K S+ ++ GD ++ TI +PL
Sbjct: 13 KGRLDKFLAQEIDELSRTRVQELIDDKNILVNDKVV-KASYKLESGDKISVTIPPKKPLS 71
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
A+D+ LD+VYED +V+VVNKP +VVHP+ G+ TLVNG+L+H
Sbjct: 72 LSAQDMNLDVVYEDQDVIVVNKPQGVVVHPSAGHPDHTLVNGLLYHT------------- 118
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ + S G RPGIVHR+DK TSGLL++AK
Sbjct: 119 ---------QDLAKSPEG--FRPGIVHRIDKDTSGLLMIAK 148
>gi|403069260|ref|ZP_10910592.1| hypothetical protein ONdio_06665 [Oceanobacillus sp. Ndiop]
Length = 302
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 25/173 (14%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+ + V + K+RLD +S SR+++Q+ I V +NG+ +K ++ + GD
Sbjct: 1 MNFQHEVTEEQNKMRLDKVLSEINPDRSRSQIQNWISKDHVLVNGEP-AKANYKCQAGDE 59
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ +I E+ L +AEDIPL IVYED ++LVVNKP MVVHP+ G+ +GTLVN +L+HC
Sbjct: 60 LKWSIPEVVELNIQAEDIPLSIVYEDSDLLVVNKPKGMVVHPSAGHQSGTLVNALLYHC- 118
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G RPGIVHR+DK TSGLLVVAK
Sbjct: 119 ---------------QDL-------SGINGVE-RPGIVHRIDKDTSGLLVVAK 148
>gi|365135096|ref|ZP_09343621.1| RluA family pseudouridine synthase [Subdoligranulum sp.
4_3_54A2FAA]
gi|363613066|gb|EHL64590.1| RluA family pseudouridine synthase [Subdoligranulum sp.
4_3_54A2FAA]
Length = 306
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 98/171 (57%), Gaps = 24/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
LE T + R+DA +++ ++R+ Q + G V NG+ V+K S + GD +
Sbjct: 4 LEYTAGAEDTGRRIDAALAAAFPELTRSFAQQLLAEGRVLCNGRSVAK-SARLTQGDALC 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
++ + QP+ +DIPLDIVYED ++LVVNKP MVVHPA GN GTLVN +L+HC+
Sbjct: 63 VSLPDAQPVEIIPQDIPLDIVYEDSSLLVVNKPKGMVVHPAAGNPDGTLVNALLYHCA-G 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L+ N E +RPGIVHR+DK TSGLLVVAK
Sbjct: 122 RLSGINGE----------------------VRPGIVHRIDKDTSGLLVVAK 150
>gi|346314172|ref|ZP_08855693.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906530|gb|EGX76254.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 304
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +IS + D +SR+RVQ+ + G + +N V K ++ VK D + ++ + A
Sbjct: 16 RIDKYISEQED-LSRSRVQALLAEGSILVNQNAV-KANYKVKADDCITAVFNDEMEMEAR 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E + LD+ YED++V+V+NKP ++VVHPA GN +GTLVNG+L+HC
Sbjct: 74 PEKMELDVRYEDEDVIVINKPKNIVVHPAAGNQSGTLVNGLLYHC--------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G ++RPGIVHR+DK T+GLL+VAK
Sbjct: 119 -KDL-------SGING-TLRPGIVHRIDKDTTGLLIVAK 148
>gi|421227086|ref|ZP_15683795.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2072047]
gi|395596325|gb|EJG56544.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2072047]
Length = 295
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S+ + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSA-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|451941575|ref|YP_007462212.1| ribosomal large subunit pseudouridine synthase D [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
gi|451900962|gb|AGF75424.1| ribosomal large subunit pseudouridine synthase D [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
Length = 332
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 24/171 (14%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+ D A RLD W++ + + +SR+R+Q+ IR G + ++GQ++ + ++ ++
Sbjct: 4 QRITDEDALGQRLDQWLAKQYHNALSRSRLQTLIREGCLKVDGQLIKEPKTKLRPNQIIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
T+ L+ E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 64 LTMPVLRDAEPRGEAITLDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCG-- 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK TSG++VVAK
Sbjct: 122 ---------------------NSLSGIGGVKRPGIVHRLDKNTSGVMVVAK 151
>gi|328957532|ref|YP_004374918.1| pseudouridylate synthase [Carnobacterium sp. 17-4]
gi|328673856|gb|AEB29902.1| pseudouridylate synthase [Carnobacterium sp. 17-4]
Length = 301
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + I+R+ +Q I+ G VS+NG+ + K ++ V+ GD + EL L
Sbjct: 15 RLDKVLTDLLPSITRSHIQQWIKEGNVSVNGEKM-KANYKVQPGDEIAIVEPELVSLEVL 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIP++IVY+D++V+VVNK MVVHP+ G+ TGTLVN ++HH +
Sbjct: 74 AEDIPIEIVYQDEDVVVVNKAQGMVVHPSAGHQTGTLVNALMHHIT-------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +IRPGIVHR+DK TSGLL+VAK
Sbjct: 120 --DL-------SGING-TIRPGIVHRIDKDTSGLLMVAK 148
>gi|22537512|ref|NP_688363.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae 2603V/R]
gi|76797703|ref|ZP_00779971.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 18RS21]
gi|77414617|ref|ZP_00790757.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 515]
gi|22534392|gb|AAN00236.1|AE014254_16 ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 2603V/R]
gi|76586927|gb|EAO63417.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 18RS21]
gi|77159330|gb|EAO70501.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 515]
Length = 296
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ K +RLD ++ + +SR++ I+ G+V +NGQV K + V+ GD + I
Sbjct: 3 ITIKIAGVRLDKALADNSE-LSRSQANEEIKKGIVLVNGQV-KKAKYTVQEGDRITFDIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + L +AE+IPLDI+Y+DD+V VVNKP MVVHP+ G+++GTLVN +++H
Sbjct: 61 KEEVLDYQAENIPLDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ---------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|403234869|ref|ZP_10913455.1| hypothetical protein B1040_03715 [Bacillus sp. 10403023]
Length = 302
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E ++ R+D +S+ SR +VQ I+ G +++NG + K ++ V GD +
Sbjct: 3 QFELKIEEHQQNDRIDKIVSAFNSEWSRTQVQFWIKDGNITVNGSRI-KPNYKVNIGDKI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E Q L E+I LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC
Sbjct: 62 QIEIPEPQTLDVVPEEIDLDIYYEDADVLVVNKPKGMVVHPAPGHITGTLVNGLMAHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|227890010|ref|ZP_04007815.1| pseudouridylate synthase [Lactobacillus johnsonii ATCC 33200]
gi|227849454|gb|EEJ59540.1| pseudouridylate synthase [Lactobacillus johnsonii ATCC 33200]
Length = 304
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 97/161 (60%), Gaps = 25/161 (15%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K RLD I+ +I +SR +++ + + +N + KVS+ V+ GD+++ TI ++PL
Sbjct: 13 KGRLDKVIAEKITDLSRTKIKELVNDKNILVNNKA-EKVSYKVQSGDVIDVTIPPVKPLS 71
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
EAE++ LDIVYED +V+VVNKP +VVHP+ G+ TLVNG+L+H
Sbjct: 72 LEAENLHLDIVYEDSDVIVVNKPQGIVVHPSAGHPDHTLVNGLLYHT------------- 118
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D++D E RPGIVHR+DK TSGLL++AK
Sbjct: 119 ---RDLADSPE--------GFRPGIVHRIDKDTSGLLMIAK 148
>gi|392957456|ref|ZP_10322979.1| hypothetical protein A374_11980 [Bacillus macauensis ZFHKF-1]
gi|391876419|gb|EIT85016.1| hypothetical protein A374_11980 [Bacillus macauensis ZFHKF-1]
Length = 303
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 105/172 (61%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+E ++ +A R+D ++S SR++VQ+ I+ G ++++G+ + K ++ V G++V
Sbjct: 3 HIEVRIEEQAQGERIDKVVTSYRPQWSRSQVQTWIKEGAITVDGKQI-KTNYKVSAGEVV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ + L E E++ L+IVYED +VLVVNKP MVVHPAPGN +GTLVNG++ HC
Sbjct: 62 TIIVPDPVTLDVEPEEMNLEIVYEDGDVLVVNKPRGMVVHPAPGNYSGTLVNGLMAHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK T+GLL+VAK
Sbjct: 120 --------------RDL-------SGINGV-LRPGIVHRIDKDTTGLLMVAK 149
>gi|343520975|ref|ZP_08757943.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 393
str. F0440]
gi|343396181|gb|EGV08718.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 393
str. F0440]
Length = 310
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 92/161 (57%), Gaps = 27/161 (16%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K+R D ++S +I +SR +Q I+ LV +N + + K + ++ GD + +I E + +
Sbjct: 11 KIRCDVFLSEKISNLSRTSIQKLIKDKLVFVNNKNI-KPNVILEIGDEITVSIPEKKEIT 69
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
AEDI LDIVYEDD ++++NKP +MVVHPA GN TLVN +L+HC L + S
Sbjct: 70 LVAEDIDLDIVYEDDYIIIINKPRNMVVHPAVGNEEHTLVNALLNHCKLSMINSE----- 124
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHRLDK T+GL++ AK
Sbjct: 125 ---------------------RPGIVHRLDKDTTGLIICAK 144
>gi|154504404|ref|ZP_02041142.1| hypothetical protein RUMGNA_01908 [Ruminococcus gnavus ATCC 29149]
gi|336432355|ref|ZP_08612190.1| hypothetical protein HMPREF0991_01309 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153795333|gb|EDN77753.1| pseudouridine synthase, RluA family [Ruminococcus gnavus ATCC
29149]
gi|336018692|gb|EGN48429.1| hypothetical protein HMPREF0991_01309 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 309
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 100/170 (58%), Gaps = 28/170 (16%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
EETV + R+D ++S+++ SR+ +Q I+ GLV +NG+ V K ++ + D V
Sbjct: 10 EETVTNE----RIDKFLSAQMPDRSRSYIQKLIKDGLVEVNGKQV-KTNYKLGSEDEVKL 64
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I EL+ E+IPLDI+YED ++LVVNKP MVVHPAPG+ TGTLVN +++HC
Sbjct: 65 QIPELEVPDILPEEIPLDILYEDTDLLVVNKPKGMVVHPAPGHYTGTLVNALMYHCR--- 121
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I+G +RPGIVHR+D T+G L+V K
Sbjct: 122 -------------------ENLSGINGV-MRPGIVHRIDMDTTGSLLVCK 151
>gi|410594777|ref|YP_006951504.1| RNA pseudouridine synthase ylyB [Streptococcus agalactiae SA20-06]
gi|410518416|gb|AFV72560.1| RNA pseudouridine synthase ylyB [Streptococcus agalactiae SA20-06]
Length = 296
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ K +RLD ++ + +SR++ I+ G+V +NGQV K + V+ GD + I
Sbjct: 3 ITIKIAGVRLDKALADNSE-LSRSQANEEIKKGIVLVNGQV-KKAKYTVQEGDRITFDIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + L +AE+IPLDI+Y+DD+V VVNKP MVVHP+ G+++GTLVN +++H
Sbjct: 61 KEEVLDYQAENIPLDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ---------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|160947739|ref|ZP_02094906.1| hypothetical protein PEPMIC_01674 [Parvimonas micra ATCC 33270]
gi|158446873|gb|EDP23868.1| pseudouridine synthase, RluA family [Parvimonas micra ATCC 33270]
Length = 310
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 27/161 (16%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K+R D ++S +I +SR +Q I+ LV +NG+ + K + ++ GD + +I + + +
Sbjct: 11 KIRCDVFLSEKISNLSRTSIQKLIKGKLVFVNGKNI-KPNVILEIGDEITVSIPDKKEIT 69
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
AEDI LDIVYEDD ++++NKP +MVVHPA GN TLVN +L+HC L + S
Sbjct: 70 LVAEDIDLDIVYEDDYIIIINKPRNMVVHPAVGNEKHTLVNALLNHCKLSMINSE----- 124
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHRLDK T+GL++ AK
Sbjct: 125 ---------------------RPGIVHRLDKDTTGLIICAK 144
>gi|346992351|ref|ZP_08860423.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp.
TW15]
Length = 344
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 97/177 (54%), Gaps = 26/177 (14%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRI---DGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113
G +L E A RLD ++ + + +SR R+ I G V+++G V+ +
Sbjct: 2 GTRLIEFQIAAAPPPRLDKALARDVPAEENLSRTRLTRLISEGAVTVDGAVIKDPKAKIS 61
Query: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
+ T++E + EDIPL++VYEDD+++V+NKPA MVVHPAPG+ GTLVN +L
Sbjct: 62 EDAQIGITVAEAEDSHIGPEDIPLEVVYEDDDLIVINKPAGMVVHPAPGSPNGTLVNALL 121
Query: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
HHC ED+S G RPGIVHR+DK TSGLLVVAK
Sbjct: 122 HHC---------------GEDLSG--------VGGVKRPGIVHRIDKETSGLLVVAK 155
>gi|254510211|ref|ZP_05122278.1| ribosomal large subunit pseudouridine synthase D [Rhodobacteraceae
bacterium KLH11]
gi|221533922|gb|EEE36910.1| ribosomal large subunit pseudouridine synthase D [Rhodobacteraceae
bacterium KLH11]
Length = 344
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 97/177 (54%), Gaps = 26/177 (14%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRI---DGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113
G +L E A RLD ++ + + +SR R+ I G V+++G VV V
Sbjct: 2 GTRLIEFQIAAAPPPRLDKALARDVPAEESLSRTRLARLIGEGAVTVDGAVVDDPKAKVA 61
Query: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
+ T++E + EDIPLD+VYEDD+++V+NKPA MVVHPAPG+ GTLVN +L
Sbjct: 62 EDAQIAITVAEAEDSHIGPEDIPLDVVYEDDDLIVINKPAGMVVHPAPGSPNGTLVNALL 121
Query: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
HHC +D+S G RPGIVHR+DK TSGLLVVAK
Sbjct: 122 HHCG---------------DDLSG--------VGGVKRPGIVHRIDKETSGLLVVAK 155
>gi|76787790|ref|YP_330006.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae A909]
gi|77408235|ref|ZP_00784979.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae COH1]
gi|77412105|ref|ZP_00788430.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae CJB111]
gi|406709758|ref|YP_006764484.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GD201008-001]
gi|421148189|ref|ZP_15607855.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GB00112]
gi|421531897|ref|ZP_15978273.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae STIR-CD-17]
gi|424049180|ref|ZP_17786731.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae ZQ0910]
gi|76562847|gb|ABA45431.1| ribosomal large subunit pseudouridine synthase, RluA family
[Streptococcus agalactiae A909]
gi|77161861|gb|EAO72847.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae CJB111]
gi|77173176|gb|EAO76301.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae COH1]
gi|389649380|gb|EIM70862.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae ZQ0910]
gi|401685165|gb|EJS81179.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GB00112]
gi|403642920|gb|EJZ03723.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae STIR-CD-17]
gi|406650643|gb|AFS46044.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GD201008-001]
Length = 296
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ K +RLD ++ + +SR++ I+ G+V +NGQV K + V+ GD + I
Sbjct: 3 ITIKIAGVRLDKALADNSE-LSRSQANEEIKKGIVLVNGQV-KKAKYTVQEGDRITFDIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + L +AE+IPLDI+Y+DD+V VVNKP MVVHP+ G+++GTLVN +++H
Sbjct: 61 KEEVLDYQAENIPLDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ---------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|383788875|ref|YP_005473444.1| ribosomal large subunit pseudouridine synthase D [Caldisericum
exile AZM16c01]
gi|381364512|dbj|BAL81341.1| ribosomal large subunit pseudouridine synthase D [Caldisericum
exile AZM16c01]
Length = 303
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD I ++ +SR+ +Q I+ G V +NG +V K SH VK D+V E + L+ E
Sbjct: 12 RLDKVIEDKLPNLSRSYIQKLIKEGYVLVNGSIVEKPSHKVKVNDIVEVKEKEAEVLQVE 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
ED P+ IVYED+ +L+++K A + VHP T TLVN +L+H
Sbjct: 72 KEDKPIKIVYEDEYLLIIDKEAGLTVHPVGSKTTNTLVNRLLYHI--------------- 116
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ED+S G IRPGIVHRLD+ TSGL+VVAK
Sbjct: 117 -EDLSQ--------IGGIIRPGIVHRLDRDTSGLMVVAK 146
>gi|338739820|ref|YP_004676782.1| ribosomal large subunit pseudouridine synthase D [Hyphomicrobium
sp. MC1]
gi|337760383|emb|CCB66214.1| ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase) [Hyphomicrobium sp. MC1]
Length = 361
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D W++++I+GISRARVQ+ IR G VS G + ++ VK G +I + +
Sbjct: 35 RVDRWLATKIEGISRARVQALIRDGHVSA-GDTIRELRTPVKPGLTYTVSIPPAEDSGVK 93
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+I L +VYEDDNV+V++KPA +VVHP+ G+ GTLVN ++ HC
Sbjct: 94 GEEIALHVVYEDDNVIVIDKPAGLVVHPSAGHDAGTLVNALIAHCG-------------- 139
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSGLLVVAK
Sbjct: 140 --------DSLSGIGGVK-RPGIVHRLDKDTSGLLVVAK 169
>gi|91206061|ref|YP_538416.1| ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Rickettsia bellii RML369-C]
gi|157826559|ref|YP_001495623.1| ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Rickettsia bellii OSU 85-389]
gi|91069605|gb|ABE05327.1| Ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Rickettsia bellii RML369-C]
gi|157801863|gb|ABV78586.1| Ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Rickettsia bellii OSU 85-389]
Length = 312
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 98/171 (57%), Gaps = 24/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
LE +V T+ LRLD +S ++ +SR ++Q +I+S V IN ++ VK D++
Sbjct: 2 LEYSVPTELSGLRLDKALSQLLENVSRNQIQKAIKSSCVQINNVIILDSDILVKENDIIL 61
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E + L EA DI LDIVYED++++V+NK A M VHP G+ TLVN +LHH
Sbjct: 62 FSFKEPEELTIEAADIKLDIVYEDEDLIVINKAAGMTVHPGAGHHDDTLVNALLHH---- 117
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++SD G+S RPGIVHRLDK T+GL+VVAK
Sbjct: 118 ------------TRNLSD--------IGSSERPGIVHRLDKDTTGLMVVAK 148
>gi|86144060|ref|ZP_01062398.1| ribosomal large subunit pseudouridine synthase D [Leeuwenhoekiella
blandensis MED217]
gi|85829520|gb|EAQ47984.1| ribosomal large subunit pseudouridine synthase D [Leeuwenhoekiella
blandensis MED217]
Length = 344
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 101/178 (56%), Gaps = 33/178 (18%)
Query: 59 QLEETVDTKAGK----LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKG 114
+L E AGK LR+D ++ + I+ +R ++Q + ++G + +NG VV K +H VK
Sbjct: 15 ELYEHYSFTAGKGQEPLRVDKFLMNFIEKATRNKIQQAAKNGNIQVNGAVV-KQNHKVKA 73
Query: 115 GDMVNCTISELQPLR--AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
D+V + E P EDIPLDIV+EDD +LVVNKPA MVVHP GN +GTL+N +
Sbjct: 74 NDVVRV-LFEHPPYEFLLTPEDIPLDIVFEDDTLLVVNKPAGMVVHPGHGNYSGTLINAL 132
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++H F + +S RPG+VHR+DK TSGLLVVAK
Sbjct: 133 IYH-------------------------FDNLPENSSGRPGLVHRIDKDTSGLLVVAK 165
>gi|424847927|ref|ZP_18272469.1| pseudouridine synthase, RluA family [Enterococcus faecium R501]
gi|402918671|gb|EJX39338.1| pseudouridine synthase, RluA family [Enterococcus faecium R501]
Length = 303
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 106/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q +++G VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIHHESG--RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V VVNKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVVNKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|403379002|ref|ZP_10921059.1| hypothetical protein PJC66_04140 [Paenibacillus sp. JC66]
Length = 317
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 105/166 (63%), Gaps = 27/166 (16%)
Query: 66 TKAGKLRLDAWISSRID-GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
++AG+ R+D WIS ++ +SR ++Q IRSG V +N + V K ++ ++ D + I E
Sbjct: 24 SEAGE-RIDKWISGFMEEDVSRTQIQDWIRSGHVLVNEKQV-KPNYKLQLDDRLLLQIPE 81
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
+ L E EDI LD+VYED +V+VVNKP MVVHPAPG+A+GTLVN +L+HC
Sbjct: 82 PEELSIEPEDIALDVVYEDSDVIVVNKPRGMVVHPAPGHASGTLVNALLYHC-------- 133
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+ AK
Sbjct: 134 --------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMAAK 163
>gi|148240684|ref|YP_001226071.1| pseudouridylate synthase, 23S RNA-specific [Synechococcus sp. WH
7803]
gi|147849223|emb|CAK24774.1| Pseudouridylate synthase, 23S RNA-specific [Synechococcus sp. WH
7803]
Length = 333
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 99/175 (56%), Gaps = 30/175 (17%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L + K +RLD W+ S+ SRAR+Q I +G V +NG K ++ GD V
Sbjct: 25 ELVTLIYPKPLPMRLDRWLVSQRSEQSRARIQKFIDAGYVRVNGNT-GKAKTPLRQGDEV 83
Query: 119 NCTISELQPL---RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
+ +PL + EA D LD+++ED++++V+NKPA + VHPAPGN GTLVNG+LHH
Sbjct: 84 QLWMPPPEPLPYLKPEAMD--LDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHH 141
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
C P L ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 142 C--PDL---------------------PGISG-KLRPGIVHRLDKDTTGCIVIAK 172
>gi|159899422|ref|YP_001545669.1| RluA family pseudouridine synthase [Herpetosiphon aurantiacus DSM
785]
gi|159892461|gb|ABX05541.1| pseudouridine synthase, RluA family [Herpetosiphon aurantiacus DSM
785]
Length = 323
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 103/181 (56%), Gaps = 30/181 (16%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVS 109
EP AN +Q+ E +AG+ RLD +S+ + +SR VQ I + +NG+ +K S
Sbjct: 2 EPTANLTTIQVGEA---EAGQ-RLDRLVSANMPDLSRTYVQQLITDLHIRVNGRG-AKAS 56
Query: 110 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 169
V+ GD + + +P AED+PLD++YED +VL+VNK A MVVHPAPG+ TGTLV
Sbjct: 57 LPVQIGDQIEIFLPLAKPTDIVAEDLPLDVIYEDADVLLVNKAAGMVVHPAPGHTTGTLV 116
Query: 170 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 229
N +L+ P L +S +RPGIVHRLDK TSGLLV+A
Sbjct: 117 NALLY--RYPHLTTS-----------------------GDLRPGIVHRLDKETSGLLVIA 151
Query: 230 K 230
K
Sbjct: 152 K 152
>gi|254477672|ref|ZP_05091058.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp. R11]
gi|214031915|gb|EEB72750.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp. R11]
Length = 344
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 94/162 (58%), Gaps = 26/162 (16%)
Query: 72 RLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD +S + +SR R+ I +G + ++G++V+ V+ G ++ T+ E +
Sbjct: 17 RLDKAVSRDVPEEATLSRTRLARLIEAGQLEVDGKIVTDAKARVEEGATISITVEEAEDS 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
EDIPL++++EDD+++V+NKPA MVVHPAPG +GTLVN +LHHC
Sbjct: 77 HIGPEDIPLEVIFEDDDLIVINKPAGMVVHPAPGTPSGTLVNALLHHCG----------- 125
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S + G RPGIVHR+DK TSGLLVVAK
Sbjct: 126 -----------DNLSGVGGVK-RPGIVHRIDKETSGLLVVAK 155
>gi|357041028|ref|ZP_09102810.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
gi|355355887|gb|EHG03690.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
Length = 312
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD +RLD +++ + + +SR+ VQ I G V++N + V + ++ +K GD V +
Sbjct: 9 VDAGDAGVRLDVFVAFKEEQLSRSFVQKLIGDGAVTVNQEAV-RANYRLKEGDTVAVVVP 67
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
L+ E IPLDI YED +++VVNKP MVVHPA GN +GTLVN +LHHC
Sbjct: 68 PPVELKVCPEPIPLDIFYEDKDIIVVNKPRGMVVHPAEGNYSGTLVNALLHHC------- 120
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------QDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 150
>gi|225011533|ref|ZP_03701971.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-2A]
gi|225004036|gb|EEG42008.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-2A]
Length = 346
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 37/175 (21%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T D LR+D ++ +R++ ++R+++Q + ++G + ++G V K ++ VKGGD V
Sbjct: 25 TADPGQSPLRVDKFLMARVENVTRSKIQQAAKAGSIFVDGNEV-KSNYKVKGGDKVKVLF 83
Query: 123 SE------LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
S L P ED+PLDIV+EDD ++VVNKP MVVHP GN +GTL+NG+L+H
Sbjct: 84 SHPPYENLLVP-----EDMPLDIVFEDDILVVVNKPPGMVVHPGHGNYSGTLLNGLLYH- 137
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKV 231
F ++ RPG+VHR+DK TSGLLV+AK
Sbjct: 138 ------------------------FDQLPKNSNERPGLVHRIDKDTSGLLVIAKT 168
>gi|313901079|ref|ZP_07834567.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|373121536|ref|ZP_09535404.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
gi|312954037|gb|EFR35717.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|371665554|gb|EHO30719.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
Length = 304
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 99/159 (62%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +IS + D +SR+RVQ+ + G + +N V K ++ VK D + ++ + A
Sbjct: 16 RIDKYISEQED-LSRSRVQALLAEGSILVNQNAV-KANYKVKADDCITAVFNDEMEMEAR 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E + LD+ YED++V+V+NKP ++VVHPA GN +GTLVNG+L+HC
Sbjct: 74 PEKMELDVRYEDEDVIVINKPKNIVVHPAAGNQSGTLVNGLLYHC--------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G ++RPGIVHR+DK T+GLL++AK
Sbjct: 119 -KDL-------SGING-TLRPGIVHRIDKDTTGLLIIAK 148
>gi|430750496|ref|YP_007213404.1| RluA family pseudouridine synthase [Thermobacillus composti KWC4]
gi|430734461|gb|AGA58406.1| pseudouridine synthase, RluA family [Thermobacillus composti KWC4]
Length = 317
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 27/167 (16%)
Query: 65 DTKAGKLRLDAWIS-SRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ +AG+ RLD +++ S +G+SR +VQ IR+G V++NG V K ++ ++ GD+V T
Sbjct: 24 EAEAGE-RLDKFVAESAEEGVSRTQVQEWIRTGAVTVNGATV-KPNYRLEPGDVVAVTPP 81
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + E IPL +VYED +V+VV+KP MVVHPA G+A+GTLVN +LHHC
Sbjct: 82 EPEDADIRPEPIPLHVVYEDGDVIVVDKPRGMVVHPAHGHASGTLVNALLHHC------- 134
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+ AK
Sbjct: 135 ---------RDL-------SGING-RLRPGIVHRIDKDTSGLLMAAK 164
>gi|307704906|ref|ZP_07641797.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK597]
gi|307621520|gb|EFO00566.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK597]
Length = 295
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD++ +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVITYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|255311484|ref|ZP_05354054.1| ribosomal large subunit pseudouridine synthase D [Chlamydia
trachomatis 6276]
Length = 335
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 84/160 (52%), Gaps = 22/160 (13%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT-ISELQPLRA 130
RLD + S SRA Q I G V +NG+V ++VSH + GD+V I E +P
Sbjct: 23 RLDKGLVSYNGAYSRAFYQQQIELGRVRVNGRVYTRVSHPLSLGDVVEVELIEEKEPSSL 82
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EDIPLD VYEDD +LV+NKP MVVHPAPG+ GT+V+ +LH
Sbjct: 83 IPEDIPLDKVYEDDMILVINKPRDMVVHPAPGHTQGTVVHALLHEIG------------- 129
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E RPGIVHRLDK TSGLL+ K
Sbjct: 130 --------ERLKQEFPEEPWRPGIVHRLDKDTSGLLITVK 161
>gi|255029306|ref|ZP_05301257.1| hypothetical protein LmonL_09598 [Listeria monocytogenes LO28]
Length = 245
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD ++ +
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIHYEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|317129279|ref|YP_004095561.1| pseudouridine synthase [Bacillus cellulosilyticus DSM 2522]
gi|315474227|gb|ADU30830.1| pseudouridine synthase, RluA family [Bacillus cellulosilyticus DSM
2522]
Length = 305
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 99/173 (57%), Gaps = 26/173 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++L E + G +R+D +IS SR +Q I + +NG + K + VK GD
Sbjct: 1 MELYEITSEENG-VRIDKFISDHFPQWSRTIIQQWIVDNHIQVNGTPI-KSKYKVKAGDH 58
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ + PL AE++ LDI+YED +VLVVNKP MVVHPAPG+ TGTLVNG+++HC
Sbjct: 59 IEIREPDPIPLEIPAENLNLDIIYEDGDVLVVNKPRGMVVHPAPGHYTGTLVNGLMYHC- 117
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 ---------------HDL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 147
>gi|317058953|ref|ZP_07923438.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_5R]
gi|313684629|gb|EFS21464.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_5R]
Length = 318
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 95/159 (59%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ ++ +R+ ++ I G V N +V++K +KG +++ I E + +
Sbjct: 20 RLDLFLKEQLPEATRSYLEKLITEGYVLCNEKVITKNGKKLKGKEVIQLAIPEEEEMEIV 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED +LVVNK A+MVVHPA GN +GTLVN +L++C
Sbjct: 80 AENIPLDIVYEDKYLLVVNKQANMVVHPALGNYSGTLVNALLYYCK-------------- 125
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E++SD IRPGIVHRLDK T+GL++VAK
Sbjct: 126 -ENLSD--------MNGVIRPGIVHRLDKDTTGLIIVAK 155
>gi|255522642|ref|ZP_05389879.1| hypothetical protein LmonocFSL_15771 [Listeria monocytogenes FSL
J1-175]
Length = 279
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD ++ +
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIHYEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|300767399|ref|ZP_07077311.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300495218|gb|EFK30374.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 320
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 26/177 (14%)
Query: 54 NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113
N AG E+ RLD +++ +R++V I++ V++NGQ+ + H VK
Sbjct: 13 NVAGATTEQQFMITDQTGRLDKVLAALQSVWTRSQVDKLIKTDQVTVNGQLEASKYH-VK 71
Query: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
GD + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN +L
Sbjct: 72 PGDEIVVAAQTVQQTTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALL 131
Query: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+H L S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 132 YHSPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAK 163
>gi|114799098|ref|YP_762171.1| RluA family pseudouridine synthase [Hyphomonas neptunium ATCC
15444]
gi|114739272|gb|ABI77397.1| pseudouridine synthase, RluA family [Hyphomonas neptunium ATCC
15444]
Length = 341
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLDA++ +R +GISR+R ++ I G V++ G V + VK G + + P E
Sbjct: 16 RLDAFLGARAEGISRSRAKTLIEEGAVTVGGAVETNPRAPVKKGLVYAVNMPPPVPAMPE 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE IPL+I++ED +++++NK A M VHPAPG+ TGTLVN +LHHC
Sbjct: 76 AEAIPLEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNALLHHC--------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++V AK
Sbjct: 121 -------QGQLSGIGGVE-RPGIVHRLDKLTSGVMVAAK 151
>gi|422327552|ref|ZP_16408579.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
gi|371663392|gb|EHO28582.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
Length = 304
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 99/159 (62%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +IS + D +SR+RVQ+ + G + +N V K ++ VK D + ++ + A
Sbjct: 16 RIDKYISEQED-LSRSRVQALLAEGSILVNQNAV-KANYKVKADDCITAVFNDEMEMEAR 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E + LD+ YED++V+V+NKP ++VVHPA GN +GTLVNG+L+HC
Sbjct: 74 PEKMELDVRYEDEDVIVINKPKNIVVHPAAGNQSGTLVNGLLYHC--------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G ++RPGIVHR+DK T+GLL++AK
Sbjct: 119 -KDL-------SGING-TLRPGIVHRIDKDTTGLLIIAK 148
>gi|419707197|ref|ZP_14234692.1| Pseudouridine synthase [Streptococcus salivarius PS4]
gi|383283078|gb|EIC81047.1| Pseudouridine synthase [Streptococcus salivarius PS4]
Length = 297
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ SK + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKALADLTE-LSRSQANEAIKAGTVLVNGKS-SKAKYAVKEGDVITYE 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLDYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|262038336|ref|ZP_06011717.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
goodfellowii F0264]
gi|261747640|gb|EEY35098.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
goodfellowii F0264]
Length = 346
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 26/168 (15%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV T+ R+D+++S + D ++R+R+Q I+ G VS+N + V K S+ V+ D + I
Sbjct: 43 TVSTEKTNKRVDSFLSEKTD-LTRSRIQQLIKDGNVSVNNKSV-KSSYKVEENDRIEIII 100
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + + AE+I ++I+YED ++ V+NK A MVVHPA GN + TLVN IL+H
Sbjct: 101 PEAEKVEIIAENIDINIIYEDKDIAVINKKAGMVVHPAHGNYSRTLVNAILYHI------ 154
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHRLDK TSGL+VVAK
Sbjct: 155 ----------KDL-------SGING-EIRPGIVHRLDKDTSGLIVVAK 184
>gi|153953824|ref|YP_001394589.1| pseudouridine synthase [Clostridium kluyveri DSM 555]
gi|219854440|ref|YP_002471562.1| hypothetical protein CKR_1097 [Clostridium kluyveri NBRC 12016]
gi|146346705|gb|EDK33241.1| Predicted pseudouridine synthase [Clostridium kluyveri DSM 555]
gi|219568164|dbj|BAH06148.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 305
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LRLD +I I SR+ +Q+ I LV +N ++ K ++ K GD + ++ + L
Sbjct: 15 LRLDLFICKHIQDKSRSYIQNLIEDNLVEVNHRM-KKSNYKTKTGDNIKVSLPDAVELNI 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDI LDI+YED +V+VVNKP M+VHPA G TGTLVN +L+HC
Sbjct: 74 KGEDIKLDILYEDSDVIVVNKPQGMIVHPASGVYTGTLVNALLNHCR------------- 120
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ED+ S I+G + RPGIVHR+DK TSG+LV+AK
Sbjct: 121 --EDL-------SGINGIA-RPGIVHRIDKDTSGILVIAK 150
>gi|417923129|ref|ZP_12566601.1| pseudouridine synthase, RluA family [Streptococcus mitis SK569]
gi|342837252|gb|EGU71448.1| pseudouridine synthase, RluA family [Streptococcus mitis SK569]
Length = 295
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+ G V +NGQV K + V+ GD+V ++
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKLGQVLVNGQV-KKAKYTVQEGDIVTYHVT 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 143
>gi|395766553|ref|ZP_10447093.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
gi|395415887|gb|EJF82311.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
Length = 333
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 28/173 (16%)
Query: 61 EETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
++ D A RLD W++ + + +SR+R+Q IR G + I+ +++ + +K ++
Sbjct: 3 QQITDEDAIGQRLDQWLAKQYNNMLSRSRLQILIREGFLKIDNRIIKEPKTKLKQNQIIE 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
T+ L+ + E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN +++HC
Sbjct: 63 LTMPVLREAKPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHC--- 119
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
+S+SG RPGIVHRLDK TSG++VVAK
Sbjct: 120 ----------------------GNSLSGIGGIKRPGIVHRLDKNTSGVMVVAK 150
>gi|440750371|ref|ZP_20929615.1| Ribosomal large subunit pseudouridine synthase D [Mariniradius
saccharolyticus AK6]
gi|436481412|gb|ELP37593.1| Ribosomal large subunit pseudouridine synthase D [Mariniradius
saccharolyticus AK6]
Length = 347
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 29/170 (17%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD G R+D +++ ++ +R +VQ++I +G V +NGQ +K ++ VK D + I
Sbjct: 26 VDKGQGLTRIDKFLTEKVAHATRNKVQTAIDAGNVLVNGQP-TKANYRVKPFDEIKVFID 84
Query: 124 ELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPT 180
P E E IPLDIV+EDD +L++NKPA MVVHPA GN TGTLVNG++++ + LPT
Sbjct: 85 R-PPRDTEVLPEPIPLDIVFEDDYLLIINKPAGMVVHPAHGNWTGTLVNGLVYYFNQLPT 143
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L G + RPG+VHR+DK TSGLLV+AK
Sbjct: 144 L------------------------PGNTGRPGLVHRIDKDTSGLLVIAK 169
>gi|441471608|emb|CCQ21363.1| Uncharacterized RNA pseudouridine synthase YlyB [Listeria
monocytogenes]
gi|441474742|emb|CCQ24496.1| Uncharacterized RNA pseudouridine synthase YlyB [Listeria
monocytogenes N53-1]
Length = 303
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G + +NG++ +K ++ V+ GD ++ +
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDIMVNGEL-AKPNYKVQVGDEIHYEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|336064535|ref|YP_004559394.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pasteurianus ATCC 43144]
gi|334282735|dbj|BAK30308.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pasteurianus ATCC 43144]
Length = 298
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 26/164 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD ++ + +SR++ I+ G V +NG+ V K + VK GD+V + + +
Sbjct: 6 KEAGIRLDKALADLTE-LSRSQANDEIKKGTVLVNGKAV-KAKYAVKVGDVVTYEVPKEE 63
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
L AE+IPLDI+YEDD+V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 64 VLEYTAENIPLDIIYEDDDVAVVNKPQGMVVHPSVGHTSGTLVNALMYHI---------- 113
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 114 ------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAK 143
>gi|219670033|ref|YP_002460468.1| pseudouridine synthase [Desulfitobacterium hafniense DCB-2]
gi|219540293|gb|ACL22032.1| pseudouridine synthase, RluA family [Desulfitobacterium hafniense
DCB-2]
Length = 334
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 93/159 (58%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ R+ G SR+ +Q I G V +NG K ++ V+ D + I + L+ E
Sbjct: 44 RLDVGVTERV-GKSRSFIQGLIEEGHVLVNG-AARKANYKVRAMDQIAVVIPPPRELKVE 101
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPL+I+YED++VLVVNK MVVHPAPG T TLVN +L+HC
Sbjct: 102 AENIPLEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCR-------------- 147
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G +RPGIVHR+DK TSGLLVVAK
Sbjct: 148 ---------NLSGINGV-LRPGIVHRIDKDTSGLLVVAK 176
>gi|255070545|ref|XP_002507354.1| predicted protein [Micromonas sp. RCC299]
gi|226522629|gb|ACO68612.1| predicted protein [Micromonas sp. RCC299]
Length = 357
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 107/171 (62%), Gaps = 18/171 (10%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
EE +A RLDA+++ +I G+SR+R+ SI+SG+V +NG V +K SH + GD V C
Sbjct: 26 EEVFVARASSSRLDAFLADQISGVSRSRIVESIKSGVVVVNGNVTTKPSHKLDIGDRVIC 85
Query: 121 -TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
I P E+IPLD+V+EDD+++VVNKP MVVHP+ G+A G+LVN +L HC+
Sbjct: 86 GEIVASPPTEVAPENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCN-- 143
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SN+ DA + D R G+VHR+DKGTSGLLV+AK
Sbjct: 144 --ERSNRG--DDASKMID-----------VPRLGVVHRIDKGTSGLLVMAK 179
>gi|424911180|ref|ZP_18334557.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847211|gb|EJA99733.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 340
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD+W++ + SR+R+++ I G VS+NG+ V++ V GD + + E +
Sbjct: 24 RLDSWLAGEVGSDFSRSRLKALIEQGAVSLNGKPVTEPKKKVHPGDRIEIVMPEPEDPEP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPL++ YED++++V+ KPA +VVHP GN TGTLVN ++HHC
Sbjct: 84 KGEDIPLNVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ---------DSLSGIGGVK-RPGIVHRLDKETSGVMVVAK 160
>gi|374340589|ref|YP_005097325.1| RluA family pseudouridine synthase [Marinitoga piezophila KA3]
gi|372102123|gb|AEX86027.1| pseudouridine synthase, RluA family [Marinitoga piezophila KA3]
Length = 307
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 95/161 (59%), Gaps = 27/161 (16%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQP-LR 129
RLD ++ ++ D ISR VQ +I+ G + +NG++ K S+ VK G++V+ + + P +
Sbjct: 15 RLDKFVVEKVPDWISRTYVQKAIKQGQIIVNGEL-KKPSYKVKNGEVVSIEVPDKPPTIE 73
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
E+IPL+I+YED +++V+NKP M+VHP +GTLVN IL+HC
Sbjct: 74 VLPENIPLNIIYEDKDIIVINKPPSMIVHPVANKVSGTLVNAILYHC------------- 120
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D + I G IRPGIVHRLDK TSG +VVAK
Sbjct: 121 KDLQGI-----------GGEIRPGIVHRLDKDTSGAIVVAK 150
>gi|257058664|ref|YP_003136552.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 8802]
gi|256588830|gb|ACU99716.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 8802]
Length = 318
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 99/176 (56%), Gaps = 26/176 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+E TV K R+D W+S +D ISR+ +Q I G + +N QV V GD +
Sbjct: 10 QIELTVQDKGD--RIDLWLSQNLDQISRSHLQKLIEQGNIYLNNQVCLNKKTKVNSGDRL 67
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ +PL + E IPLDI+YEDD+++++NK A +VVHPAPG+ TGTLV+G+L+HC
Sbjct: 68 QVFLPPPEPLELQPEPIPLDILYEDDSLIIINKSAGLVVHPAPGHTTGTLVHGLLYHC-- 125
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
P L G RPGIVHRLDK T+G +VVAK ++
Sbjct: 126 PNLVG----------------------IGGIQRPGIVHRLDKDTTGAIVVAKTDYA 159
>gi|319947181|ref|ZP_08021415.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
australis ATCC 700641]
gi|417920275|ref|ZP_12563787.1| pseudouridine synthase, RluA family [Streptococcus australis ATCC
700641]
gi|319747229|gb|EFV99488.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
australis ATCC 700641]
gi|342829926|gb|EGU64267.1| pseudouridine synthase, RluA family [Streptococcus australis ATCC
700641]
Length = 296
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 98/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +S + +SR I+ G + +NGQV K + VK GD+++ + +++ + E
Sbjct: 11 RLDKAVSE-LTELSRGLANEQIKEGKILVNGQV-KKAKYTVKEGDVISYEVPQMEEVTYE 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPL+IVY+D +V+VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 69 AEDIPLEIVYQDADVVVVNKPQGMVVHPSAGHTSGTLVNALMYHI--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -KDL-------SGING-ELRPGIVHRIDKDTSGLLMVAK 143
>gi|307127518|ref|YP_003879549.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae 670-6B]
gi|306484580|gb|ADM91449.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae 670-6B]
Length = 295
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|58038975|ref|YP_190939.1| ribosomal large subunit pseudouridine synthase D [Gluconobacter
oxydans 621H]
gi|58001389|gb|AAW60283.1| Ribosomal large subunit pseudouridine synthase D [Gluconobacter
oxydans 621H]
Length = 322
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 93/167 (55%), Gaps = 23/167 (13%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD R D ++ I +SR+RV++ I SG +S+NG+ V + + ++ G + T
Sbjct: 12 VDASTAGQRADRALADAIGTVSRSRVKALIESGNLSVNGKTVCEPAETLRDGMEMVLTFP 71
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
P R AE IPL+I+YEDD+++V++K A +V HPAPGN TGTLVN +L HC
Sbjct: 72 APTPARPVAEQIPLNILYEDDDLIVLDKQAGLVTHPAPGNETGTLVNALLGHCGEGFEGI 131
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ RPGIVHRLDK TSGL+VVAK
Sbjct: 132 GGEK-----------------------RPGIVHRLDKDTSGLMVVAK 155
>gi|322372447|ref|ZP_08046983.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C150]
gi|321277489|gb|EFX54558.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C150]
Length = 297
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKALADLTE-LSRSQANEAIKAGTVLVNGKS-AKAKYAVKEGDVITYE 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|419451268|ref|ZP_13991254.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP02]
gi|379622973|gb|EHZ87607.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP02]
Length = 295
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|340616685|ref|YP_004735138.1| ribosomal large subunit pseudouridine synthase D [Zobellia
galactanivorans]
gi|339731482|emb|CAZ94747.1| Ribosomal large subunit pseudouridine synthase D [Zobellia
galactanivorans]
Length = 342
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 95/162 (58%), Gaps = 29/162 (17%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL-QPLR 129
LR+D ++ + I+ +R ++Q + +SG + +NG +V K ++ VK GD V
Sbjct: 29 LRVDKFLMNFIEYATRNKIQQAAKSGHIWVNGAIV-KQNYKVKPGDEVKVLFEHPPHEFL 87
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEA 188
AEDIP+DIVYEDD +LVVNKPA MVVHP GN +GTL+N +LHH LP +SN+
Sbjct: 88 LVAEDIPIDIVYEDDVLLVVNKPAGMVVHPGHGNYSGTLINALLHHIKDLP--VNSNE-- 143
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPG+VHR+DK TSGLLVVAK
Sbjct: 144 ----------------------RPGLVHRIDKDTSGLLVVAK 163
>gi|228998673|ref|ZP_04158260.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock3-17]
gi|228761141|gb|EEM10100.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock3-17]
Length = 302
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR++VQ I+ G+V++NG + K ++ VK D + I
Sbjct: 8 TVTEEQKSERIDKFLAGVNNEWSRSQVQQWIKDGVVTVNGNAI-KGNYKVKVNDEIAVAI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PDPEELDILPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|148984670|ref|ZP_01817938.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP3-BS71]
gi|149006397|ref|ZP_01830109.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP18-BS74]
gi|225861177|ref|YP_002742686.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae Taiwan19F-14]
gi|298231008|ref|ZP_06964689.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254573|ref|ZP_06978159.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503058|ref|YP_003724998.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|387757323|ref|YP_006064302.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
OXC141]
gi|387788395|ref|YP_006253463.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae ST556]
gi|417312502|ref|ZP_12099214.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA04375]
gi|417676682|ref|ZP_12326093.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17545]
gi|417698343|ref|ZP_12347516.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41317]
gi|418082857|ref|ZP_12720058.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44288]
gi|418084997|ref|ZP_12722181.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47281]
gi|418093761|ref|ZP_12730890.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49138]
gi|418096036|ref|ZP_12733151.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16531]
gi|418100758|ref|ZP_12737844.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7286-06]
gi|418102650|ref|ZP_12739726.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP070]
gi|418112281|ref|ZP_12749283.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41538]
gi|418118779|ref|ZP_12755736.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA18523]
gi|418132770|ref|ZP_12769643.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11304]
gi|418141518|ref|ZP_12778331.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13455]
gi|418146150|ref|ZP_12782932.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13637]
gi|418150397|ref|ZP_12787148.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14798]
gi|418152662|ref|ZP_12789402.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16121]
gi|418154962|ref|ZP_12791693.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16242]
gi|418157604|ref|ZP_12794320.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16833]
gi|418164792|ref|ZP_12801462.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17371]
gi|418166547|ref|ZP_12803203.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17971]
gi|418171472|ref|ZP_12808096.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19451]
gi|418195962|ref|ZP_12832441.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47688]
gi|418197756|ref|ZP_12834219.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47778]
gi|418223537|ref|ZP_12850177.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5185-06]
gi|418225352|ref|ZP_12851981.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP112]
gi|418227514|ref|ZP_12854133.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 3063-00]
gi|418231995|ref|ZP_12858583.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07228]
gi|418236436|ref|ZP_12863004.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19690]
gi|419424954|ref|ZP_13965153.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7533-05]
gi|419427402|ref|ZP_13967585.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5652-06]
gi|419429090|ref|ZP_13969257.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11856]
gi|419435796|ref|ZP_13975889.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 8190-05]
gi|419444852|ref|ZP_13984867.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19923]
gi|419446996|ref|ZP_13987001.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7879-04]
gi|419448569|ref|ZP_13988566.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 4075-00]
gi|419453032|ref|ZP_13993005.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP03]
gi|419479758|ref|ZP_14019565.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19101]
gi|419486478|ref|ZP_14026244.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44128]
gi|419493073|ref|ZP_14032800.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47210]
gi|419499449|ref|ZP_14039148.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47597]
gi|419501660|ref|ZP_14041346.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47628]
gi|419505863|ref|ZP_14045524.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49194]
gi|419512326|ref|ZP_14051960.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05578]
gi|419516603|ref|ZP_14056221.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02506]
gi|419518723|ref|ZP_14058330.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA08825]
gi|419527676|ref|ZP_14067219.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17719]
gi|421208751|ref|ZP_15665773.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070005]
gi|421211030|ref|ZP_15668014.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070035]
gi|421217447|ref|ZP_15674348.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070335]
gi|421224795|ref|ZP_15681539.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070768]
gi|421233913|ref|ZP_15690535.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2061617]
gi|421240488|ref|ZP_15697035.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2080913]
gi|421249222|ref|ZP_15705684.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2082239]
gi|421283118|ref|ZP_15733905.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
gi|421287648|ref|ZP_15738413.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
gi|421289569|ref|ZP_15740320.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|421298396|ref|ZP_15749084.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
gi|421304888|ref|ZP_15755544.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
gi|147762174|gb|EDK69136.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP18-BS74]
gi|147923061|gb|EDK74176.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP3-BS71]
gi|225727922|gb|ACO23773.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae Taiwan19F-14]
gi|298238653|gb|ADI69784.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|301799912|emb|CBW32491.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
OXC141]
gi|327389210|gb|EGE87555.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA04375]
gi|332075542|gb|EGI86010.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17545]
gi|332202784|gb|EGJ16853.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41317]
gi|353756770|gb|EHD37369.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44288]
gi|353758692|gb|EHD39280.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47281]
gi|353765637|gb|EHD46179.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49138]
gi|353771023|gb|EHD51534.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16531]
gi|353772694|gb|EHD53199.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7286-06]
gi|353776816|gb|EHD57291.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP070]
gi|353784147|gb|EHD64568.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41538]
gi|353790731|gb|EHD71112.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA18523]
gi|353805769|gb|EHD86043.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13455]
gi|353806726|gb|EHD86999.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11304]
gi|353814946|gb|EHD95168.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13637]
gi|353815905|gb|EHD96117.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14798]
gi|353819307|gb|EHD99505.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16121]
gi|353823254|gb|EHE03429.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16242]
gi|353824052|gb|EHE04226.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA16833]
gi|353829653|gb|EHE09784.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17371]
gi|353830143|gb|EHE10273.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17971]
gi|353835209|gb|EHE15303.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19451]
gi|353861413|gb|EHE41350.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47688]
gi|353863912|gb|EHE43831.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47778]
gi|353878335|gb|EHE58165.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5185-06]
gi|353882660|gb|EHE62471.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP112]
gi|353883115|gb|EHE62924.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 3063-00]
gi|353888301|gb|EHE68077.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07228]
gi|353892668|gb|EHE72416.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19690]
gi|379138137|gb|AFC94928.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae ST556]
gi|379551038|gb|EHZ16133.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11856]
gi|379565829|gb|EHZ30820.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17719]
gi|379570924|gb|EHZ35883.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19101]
gi|379572545|gb|EHZ37502.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19923]
gi|379588093|gb|EHZ52939.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44128]
gi|379595111|gb|EHZ59920.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47210]
gi|379602021|gb|EHZ66793.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47628]
gi|379602503|gb|EHZ67274.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47597]
gi|379607777|gb|EHZ72523.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49194]
gi|379614536|gb|EHZ79246.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7879-04]
gi|379615931|gb|EHZ80632.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 8190-05]
gi|379618855|gb|EHZ83530.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5652-06]
gi|379620283|gb|EHZ84942.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 7533-05]
gi|379623627|gb|EHZ88260.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 4075-00]
gi|379626741|gb|EHZ91357.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP03]
gi|379636796|gb|EIA01354.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05578]
gi|379640606|gb|EIA05145.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02506]
gi|379641702|gb|EIA06237.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA08825]
gi|395573753|gb|EJG34340.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070035]
gi|395575707|gb|EJG36272.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070005]
gi|395584933|gb|EJG45325.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070335]
gi|395590583|gb|EJG50887.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070768]
gi|395602810|gb|EJG62952.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2061617]
gi|395609070|gb|EJG69160.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2080913]
gi|395614523|gb|EJG74542.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2082239]
gi|395881081|gb|EJG92130.1| pseudouridine synthase [Streptococcus pneumoniae GA04216]
gi|395888260|gb|EJG99272.1| pseudouridine synthase [Streptococcus pneumoniae GA58771]
gi|395888810|gb|EJG99820.1| pseudouridine synthase [Streptococcus pneumoniae GA54354]
gi|395902352|gb|EJH13285.1| pseudouridine synthase [Streptococcus pneumoniae GA60080]
gi|395905550|gb|EJH16455.1| pseudouridine synthase [Streptococcus pneumoniae GA62331]
gi|429317749|emb|CCP37549.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPN034156]
gi|429319292|emb|CCP32542.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPN034183]
gi|429321107|emb|CCP34516.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPN994039]
gi|429322927|emb|CCP30557.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPN994038]
Length = 295
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|407774742|ref|ZP_11122039.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
profundimaris WP0211]
gi|407282224|gb|EKF07783.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
profundimaris WP0211]
Length = 323
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ SR+R+++ I G + +NG +K+S VK GD+ + ++ E +
Sbjct: 17 RLDKVLATAWPNQSRSRIKALIEDGQLCVNGTPATKMSAKVKAGDVFDLSVPEPEMAEPT 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDI LD+++ED+++LV+NKPA MVVHPA GN +GTLVN +L HC
Sbjct: 77 PEDIKLDVLFEDEDLLVINKPAGMVVHPAAGNESGTLVNALLAHCG-------------- 122
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG +VVAK
Sbjct: 123 --------DSLSGIGGVK-RPGIVHRLDKDTSGAMVVAK 152
>gi|168494358|ref|ZP_02718501.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC3059-06]
gi|221231700|ref|YP_002510852.1| RNA pseudouridylate synthase [Streptococcus pneumoniae ATCC 700669]
gi|225854435|ref|YP_002735947.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae JJA]
gi|415698132|ref|ZP_11457043.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 459-5]
gi|415749329|ref|ZP_11477273.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SV35]
gi|415752013|ref|ZP_11479124.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SV36]
gi|418073711|ref|ZP_12710969.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11184]
gi|418076032|ref|ZP_12713271.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47502]
gi|418078419|ref|ZP_12715642.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 4027-06]
gi|418080384|ref|ZP_12717596.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6735-05]
gi|418089321|ref|ZP_12726478.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43265]
gi|418098298|ref|ZP_12735397.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6901-05]
gi|418104985|ref|ZP_12742045.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44500]
gi|418114425|ref|ZP_12751415.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5787-06]
gi|418116665|ref|ZP_12753637.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6963-05]
gi|418123199|ref|ZP_12760133.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44378]
gi|418127786|ref|ZP_12764682.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP170]
gi|418134989|ref|ZP_12771846.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11426]
gi|418136960|ref|ZP_12773802.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11663]
gi|418173297|ref|ZP_12809911.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41277]
gi|418177958|ref|ZP_12814542.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41565]
gi|418216376|ref|ZP_12843100.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae Netherlands15B-37]
gi|419431322|ref|ZP_13971468.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP05]
gi|419433612|ref|ZP_13973730.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40183]
gi|419440145|ref|ZP_13980197.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40410]
gi|419464508|ref|ZP_14004401.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA04175]
gi|419468795|ref|ZP_14008666.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA06083]
gi|419472990|ref|ZP_14012841.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13430]
gi|419497109|ref|ZP_14036820.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47522]
gi|419534390|ref|ZP_14073893.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17457]
gi|421236073|ref|ZP_15692674.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2071004]
gi|421280915|ref|ZP_15731713.1| pseudouridine synthase [Streptococcus pneumoniae GA04672]
gi|421309365|ref|ZP_15759992.1| pseudouridine synthase [Streptococcus pneumoniae GA62681]
gi|183575636|gb|EDT96164.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC3059-06]
gi|220674160|emb|CAR68683.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
ATCC 700669]
gi|225722558|gb|ACO18411.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae JJA]
gi|353747610|gb|EHD28266.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 4027-06]
gi|353749821|gb|EHD30464.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47502]
gi|353750558|gb|EHD31196.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11184]
gi|353752924|gb|EHD33548.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6735-05]
gi|353762007|gb|EHD42570.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43265]
gi|353769658|gb|EHD50174.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6901-05]
gi|353779419|gb|EHD59885.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44500]
gi|353787167|gb|EHD67574.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 5787-06]
gi|353789887|gb|EHD70276.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 6963-05]
gi|353797286|gb|EHD77621.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44378]
gi|353800247|gb|EHD80561.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP170]
gi|353839996|gb|EHE20070.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41277]
gi|353844732|gb|EHE24775.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41565]
gi|353873427|gb|EHE53288.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae Netherlands15B-37]
gi|353901587|gb|EHE77119.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11663]
gi|353902226|gb|EHE77756.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA11426]
gi|379539727|gb|EHZ04906.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA04175]
gi|379546898|gb|EHZ12036.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA06083]
gi|379552497|gb|EHZ17586.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13430]
gi|379565124|gb|EHZ30117.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17457]
gi|379576613|gb|EHZ41537.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40183]
gi|379579912|gb|EHZ44808.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40410]
gi|379601623|gb|EHZ66396.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47522]
gi|379632566|gb|EHZ97142.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP05]
gi|381309709|gb|EIC50542.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SV36]
gi|381317137|gb|EIC57867.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 459-5]
gi|381317623|gb|EIC58348.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SV35]
gi|395604992|gb|EJG65124.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2071004]
gi|395882076|gb|EJG93123.1| pseudouridine synthase [Streptococcus pneumoniae GA04672]
gi|395910786|gb|EJH21655.1| pseudouridine synthase [Streptococcus pneumoniae GA62681]
Length = 295
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|306831623|ref|ZP_07464781.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325978527|ref|YP_004288243.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|304426408|gb|EFM29522.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178455|emb|CBZ48499.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 298
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 26/164 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD ++ + +SR++ I+ G V +NG+ V K + VK GD+V + + +
Sbjct: 6 KEAGVRLDKALADLTE-LSRSQANDEIKKGTVLVNGKAV-KAKYAVKVGDVVTYEVPKEE 63
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
L AE+IPLDI+YEDD+V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 64 VLEYTAENIPLDIIYEDDDVAVVNKPQGMVVHPSVGHTSGTLVNALMYHI---------- 113
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 114 ------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAK 143
>gi|15900809|ref|NP_345413.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae TIGR4]
gi|111658131|ref|ZP_01408829.1| hypothetical protein SpneT_02000697 [Streptococcus pneumoniae
TIGR4]
gi|148992939|ref|ZP_01822558.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP9-BS68]
gi|149010429|ref|ZP_01831800.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP19-BS75]
gi|168485879|ref|ZP_02710387.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CDC1087-00]
gi|168490255|ref|ZP_02714454.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP195]
gi|169834331|ref|YP_001694382.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae Hungary19A-6]
gi|182683874|ref|YP_001835621.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CGSP14]
gi|194398681|ref|YP_002037566.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae G54]
gi|303259840|ref|ZP_07345815.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP-BS293]
gi|303262254|ref|ZP_07348198.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP14-BS292]
gi|303264676|ref|ZP_07350594.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS397]
gi|303267177|ref|ZP_07353044.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS457]
gi|303269425|ref|ZP_07355194.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS458]
gi|387759186|ref|YP_006066164.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
INV200]
gi|417678882|ref|ZP_12328279.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17570]
gi|417686371|ref|ZP_12335649.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41301]
gi|417693847|ref|ZP_12343036.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47901]
gi|418121000|ref|ZP_12757946.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44194]
gi|418125537|ref|ZP_12762448.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44511]
gi|418130094|ref|ZP_12766978.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07643]
gi|418139276|ref|ZP_12776106.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13338]
gi|418159604|ref|ZP_12796303.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17227]
gi|418180384|ref|ZP_12816955.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41688]
gi|418184744|ref|ZP_12821291.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47283]
gi|418186941|ref|ZP_12823470.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47360]
gi|418189160|ref|ZP_12825675.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47373]
gi|418191474|ref|ZP_12827978.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47388]
gi|418200243|ref|ZP_12836688.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47976]
gi|418214101|ref|ZP_12840836.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA54644]
gi|418229675|ref|ZP_12856281.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP01]
gi|418234127|ref|ZP_12860706.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA08780]
gi|419477594|ref|ZP_14017419.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA18068]
gi|419484207|ref|ZP_14023983.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43257]
gi|419490848|ref|ZP_14030588.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47179]
gi|419510550|ref|ZP_14050194.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP141]
gi|419514486|ref|ZP_14054113.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae England14-9]
gi|419520864|ref|ZP_14060460.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05245]
gi|419523187|ref|ZP_14062767.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13723]
gi|419530255|ref|ZP_14069785.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40028]
gi|419532159|ref|ZP_14071676.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47794]
gi|421206376|ref|ZP_15663437.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2090008]
gi|421212985|ref|ZP_15669946.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070108]
gi|421215158|ref|ZP_15672086.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070109]
gi|421220079|ref|ZP_15676929.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070425]
gi|421222406|ref|ZP_15679197.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070531]
gi|421229571|ref|ZP_15686244.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2061376]
gi|421247189|ref|ZP_15703676.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2082170]
gi|421268130|ref|ZP_15719002.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR95]
gi|421270609|ref|ZP_15721465.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR48]
gi|421274831|ref|ZP_15725663.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA52612]
gi|421278704|ref|ZP_15729512.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17301]
gi|421291800|ref|ZP_15742538.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|421294236|ref|ZP_15744959.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|421296078|ref|ZP_15746790.1| pseudouridine synthase [Streptococcus pneumoniae GA58581]
gi|421300778|ref|ZP_15751449.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
gi|421311669|ref|ZP_15762276.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
gi|14972404|gb|AAK75053.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae TIGR4]
gi|147764910|gb|EDK71839.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP19-BS75]
gi|147928391|gb|EDK79407.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP9-BS68]
gi|168996833|gb|ACA37445.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae Hungary19A-6]
gi|182629208|gb|ACB90156.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CGSP14]
gi|183571050|gb|EDT91578.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CDC1087-00]
gi|183571388|gb|EDT91916.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP195]
gi|194358348|gb|ACF56796.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae G54]
gi|301801775|emb|CBW34486.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
INV200]
gi|302636577|gb|EFL67068.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP14-BS292]
gi|302639045|gb|EFL69505.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP-BS293]
gi|302641044|gb|EFL71422.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS458]
gi|302643292|gb|EFL73572.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS457]
gi|302645763|gb|EFL75992.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS397]
gi|332073261|gb|EGI83740.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17570]
gi|332076208|gb|EGI86674.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41301]
gi|332204930|gb|EGJ18995.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47901]
gi|353793827|gb|EHD74186.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44194]
gi|353797791|gb|EHD78122.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44511]
gi|353803386|gb|EHD83678.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07643]
gi|353821337|gb|EHE01513.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17227]
gi|353845996|gb|EHE26034.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41688]
gi|353851280|gb|EHE31276.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47283]
gi|353852766|gb|EHE32752.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47360]
gi|353856302|gb|EHE36271.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47373]
gi|353857375|gb|EHE37338.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47388]
gi|353865290|gb|EHE45199.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47976]
gi|353871384|gb|EHE51255.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA54644]
gi|353888372|gb|EHE68146.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA08780]
gi|353889581|gb|EHE69351.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP01]
gi|353905519|gb|EHE80942.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13338]
gi|379539878|gb|EHZ05055.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05245]
gi|379557918|gb|EHZ22955.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13723]
gi|379566976|gb|EHZ31963.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA18068]
gi|379574254|gb|EHZ39198.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40028]
gi|379583718|gb|EHZ48595.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43257]
gi|379594427|gb|EHZ59237.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47179]
gi|379606329|gb|EHZ71077.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47794]
gi|379633743|gb|EHZ98312.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP141]
gi|379637582|gb|EIA02135.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae England14-9]
gi|395576290|gb|EJG36846.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2090008]
gi|395580572|gb|EJG41053.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070108]
gi|395581291|gb|EJG41763.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070109]
gi|395588356|gb|EJG48686.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070425]
gi|395588574|gb|EJG48902.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2070531]
gi|395596383|gb|EJG56601.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2061376]
gi|395614825|gb|EJG74843.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2082170]
gi|395868404|gb|EJG79522.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR48]
gi|395871554|gb|EJG82660.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR95]
gi|395875559|gb|EJG86640.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA52612]
gi|395880137|gb|EJG91190.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17301]
gi|395894017|gb|EJH04998.1| pseudouridine synthase [Streptococcus pneumoniae GA56348]
gi|395894526|gb|EJH05506.1| pseudouridine synthase [Streptococcus pneumoniae GA56113]
gi|395897291|gb|EJH08255.1| pseudouridine synthase [Streptococcus pneumoniae GA58581]
gi|395900202|gb|EJH11141.1| pseudouridine synthase [Streptococcus pneumoniae GA19998]
gi|395912247|gb|EJH23110.1| pseudouridine synthase [Streptococcus pneumoniae GA58981]
Length = 295
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|51892381|ref|YP_075072.1| 23S rRNA pseudouridine synthase [Symbiobacterium thermophilum IAM
14863]
gi|51856070|dbj|BAD40228.1| 23S rRNA pseudouridine synthase [Symbiobacterium thermophilum IAM
14863]
Length = 304
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 26/171 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRID-GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E + + G R+D +++ R + G+SR+R+Q+ I G V++NG + K V GD++
Sbjct: 3 EYRITAEEGHPRIDVFLAGRPEIGLSRSRIQALIDEGQVTLNG-AMPKARQAVNPGDVIV 61
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ + +P+ EDIPLDIVYED+++LVVNK +VVHPA G+ TGTLV+ +L
Sbjct: 62 VRVPDPEPMELVPEDIPLDIVYEDEDILVVNKQRGLVVHPAAGHWTGTLVHALL------ 115
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ D E I G +RPGIVHRLDK T+GLLVVAK
Sbjct: 116 -------DKVDDLEGI-----------GGELRPGIVHRLDKDTTGLLVVAK 148
>gi|421074245|ref|ZP_15535285.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
gi|392527751|gb|EIW50837.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
Length = 310
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 103/166 (62%), Gaps = 26/166 (15%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
+++AG+ RLD +++ + SR+ VQ I SG V +N ++V K ++ V+ D + +I E
Sbjct: 12 ESQAGE-RLDVFLTKQKPDTSRSAVQRLISSGDVIVNEKIV-KANYKVQALDDIQVSIPE 69
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
++ L AE+IPL I+YED++++++NK MVVHPA GN GTLVN +L HC
Sbjct: 70 IKTLELTAEEIPLAILYEDNDIIIINKSRGMVVHPAAGNYNGTLVNALLEHC-------- 121
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ED+ S I+G + RPGIVHRLDK TSG++VVAK
Sbjct: 122 --------EDL-------SGINGVA-RPGIVHRLDKDTSGVMVVAK 151
>gi|312864274|ref|ZP_07724508.1| pseudouridine synthase, RluA family [Streptococcus vestibularis
F0396]
gi|322517241|ref|ZP_08070120.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
vestibularis ATCC 49124]
gi|311100275|gb|EFQ58484.1| pseudouridine synthase, RluA family [Streptococcus vestibularis
F0396]
gi|322124147|gb|EFX95681.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
vestibularis ATCC 49124]
Length = 296
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKALADLTE-LSRSQANEAIKAGTVLVNGKS-AKAKYAVKEGDVITYV 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|306820474|ref|ZP_07454110.1| ribosomal large subunit pseudouridine synthase D [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304551549|gb|EFM39504.1| ribosomal large subunit pseudouridine synthase D [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 300
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 95/164 (57%), Gaps = 25/164 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++ +++ +SR+++QS I SG +S+NG +K S +K GD V E
Sbjct: 14 IRLDVYLGDKLE-LSRSKIQSLIESGNISLNGNK-AKASVKLKTGDTVYVNYQEENKAEI 71
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+A+DI LDIVYEDD+VLVVNKP MV H A GN GTLVN +L++
Sbjct: 72 KAQDIALDIVYEDDDVLVVNKPRGMVTHVANGNHEGTLVNALLYYLK------------- 118
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+DI S+ R GIVHR+DK TSGLLVVAK FS
Sbjct: 119 --DDI--------SLQNGMYRAGIVHRIDKDTSGLLVVAKNDFS 152
>gi|257878226|ref|ZP_05657879.1| pseudouridylate synthase [Enterococcus faecium 1,230,933]
gi|257880994|ref|ZP_05660647.1| pseudouridylate synthase [Enterococcus faecium 1,231,502]
gi|257889576|ref|ZP_05669229.1| pseudouridylate synthase [Enterococcus faecium 1,231,410]
gi|257892484|ref|ZP_05672137.1| pseudouridylate synthase [Enterococcus faecium 1,231,408]
gi|260559776|ref|ZP_05831955.1| pseudouridylate synthase [Enterococcus faecium C68]
gi|293559348|ref|ZP_06675890.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1162]
gi|293569846|ref|ZP_06680933.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1071]
gi|294621730|ref|ZP_06700894.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium U0317]
gi|314939741|ref|ZP_07846963.1| pseudouridine synthase, RluA family [Enterococcus faecium
TX0133a04]
gi|314941758|ref|ZP_07848635.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133C]
gi|314948303|ref|ZP_07851695.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0082]
gi|314952391|ref|ZP_07855398.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133A]
gi|314991990|ref|ZP_07857443.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133B]
gi|314995712|ref|ZP_07860802.1| pseudouridine synthase, RluA family [Enterococcus faecium
TX0133a01]
gi|383328291|ref|YP_005354175.1| RluA family pseudouridine synthase [Enterococcus faecium Aus0004]
gi|389868530|ref|YP_006375953.1| pseudouridylate synthase [Enterococcus faecium DO]
gi|406581288|ref|ZP_11056446.1| RluA family pseudouridine synthase [Enterococcus sp. GMD4E]
gi|406583592|ref|ZP_11058648.1| RluA family pseudouridine synthase [Enterococcus sp. GMD3E]
gi|406585861|ref|ZP_11060815.1| RluA family pseudouridine synthase [Enterococcus sp. GMD2E]
gi|406591362|ref|ZP_11065646.1| RluA family pseudouridine synthase [Enterococcus sp. GMD1E]
gi|410937476|ref|ZP_11369336.1| pseudouridylate synthase [Enterococcus sp. GMD5E]
gi|415899988|ref|ZP_11551736.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E4453]
gi|424790436|ref|ZP_18216980.1| pseudouridine synthase, RluA family [Enterococcus faecium V689]
gi|424795203|ref|ZP_18221087.1| pseudouridine synthase, RluA family [Enterococcus faecium S447]
gi|424857346|ref|ZP_18281506.1| pseudouridine synthase, RluA family [Enterococcus faecium R499]
gi|424907805|ref|ZP_18331258.1| pseudouridine synthase, RluA family [Enterococcus faecium R497]
gi|424950447|ref|ZP_18365611.1| pseudouridine synthase, RluA family [Enterococcus faecium R496]
gi|424954133|ref|ZP_18369048.1| pseudouridine synthase, RluA family [Enterococcus faecium R494]
gi|424955881|ref|ZP_18370688.1| pseudouridine synthase, RluA family [Enterococcus faecium R446]
gi|424959148|ref|ZP_18373749.1| pseudouridine synthase, RluA family [Enterococcus faecium P1986]
gi|424963812|ref|ZP_18377965.1| pseudouridine synthase, RluA family [Enterococcus faecium P1190]
gi|424969001|ref|ZP_18382592.1| pseudouridine synthase, RluA family [Enterococcus faecium P1140]
gi|424970858|ref|ZP_18384334.1| pseudouridine synthase, RluA family [Enterococcus faecium P1139]
gi|424975249|ref|ZP_18388423.1| pseudouridine synthase, RluA family [Enterococcus faecium P1137]
gi|424979575|ref|ZP_18392419.1| pseudouridine synthase, RluA family [Enterococcus faecium P1123]
gi|424981648|ref|ZP_18394369.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV99]
gi|424983351|ref|ZP_18395944.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV69]
gi|424988051|ref|ZP_18400393.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV38]
gi|424991676|ref|ZP_18403811.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV26]
gi|424993822|ref|ZP_18405797.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV168]
gi|424997132|ref|ZP_18408899.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV165]
gi|425000110|ref|ZP_18411691.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV161]
gi|425004135|ref|ZP_18415464.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV102]
gi|425007659|ref|ZP_18418779.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV1]
gi|425009934|ref|ZP_18420917.1| pseudouridine synthase, RluA family [Enterococcus faecium E422]
gi|425013990|ref|ZP_18424687.1| pseudouridine synthase, RluA family [Enterococcus faecium E417]
gi|425016446|ref|ZP_18427010.1| pseudouridine synthase, RluA family [Enterococcus faecium C621]
gi|425019678|ref|ZP_18430021.1| pseudouridine synthase, RluA family [Enterococcus faecium C497]
gi|425023611|ref|ZP_18433721.1| pseudouridine synthase, RluA family [Enterococcus faecium C1904]
gi|425031025|ref|ZP_18436170.1| pseudouridine synthase, RluA family [Enterococcus faecium 515]
gi|425035452|ref|ZP_18440288.1| pseudouridine synthase, RluA family [Enterococcus faecium 514]
gi|425038031|ref|ZP_18442664.1| pseudouridine synthase, RluA family [Enterococcus faecium 513]
gi|425040841|ref|ZP_18445283.1| pseudouridine synthase, RluA family [Enterococcus faecium 511]
gi|425044098|ref|ZP_18448282.1| pseudouridine synthase, RluA family [Enterococcus faecium 510]
gi|425047425|ref|ZP_18451378.1| pseudouridine synthase, RluA family [Enterococcus faecium 509]
gi|425053912|ref|ZP_18457431.1| pseudouridine synthase, RluA family [Enterococcus faecium 506]
gi|425060223|ref|ZP_18463521.1| pseudouridine synthase, RluA family [Enterococcus faecium 503]
gi|427394942|ref|ZP_18887864.1| RluA family pseudouridine synthase [Enterococcus durans
FB129-CNAB-4]
gi|430830513|ref|ZP_19448571.1| RluA family pseudouridine synthase [Enterococcus faecium E0333]
gi|430844296|ref|ZP_19462194.1| RluA family pseudouridine synthase [Enterococcus faecium E1050]
gi|430846276|ref|ZP_19464136.1| RluA family pseudouridine synthase [Enterococcus faecium E1133]
gi|430854615|ref|ZP_19472328.1| RluA family pseudouridine synthase [Enterococcus faecium E1392]
gi|430862181|ref|ZP_19479533.1| RluA family pseudouridine synthase [Enterococcus faecium E1573]
gi|430959905|ref|ZP_19487040.1| RluA family pseudouridine synthase [Enterococcus faecium E1576]
gi|431008935|ref|ZP_19489375.1| RluA family pseudouridine synthase [Enterococcus faecium E1578]
gi|431228594|ref|ZP_19501735.1| RluA family pseudouridine synthase [Enterococcus faecium E1622]
gi|431258945|ref|ZP_19505122.1| RluA family pseudouridine synthase [Enterococcus faecium E1623]
gi|431369935|ref|ZP_19509634.1| RluA family pseudouridine synthase [Enterococcus faecium E1627]
gi|431499479|ref|ZP_19515058.1| RluA family pseudouridine synthase [Enterococcus faecium E1634]
gi|431539725|ref|ZP_19517929.1| RluA family pseudouridine synthase [Enterococcus faecium E1731]
gi|431745976|ref|ZP_19534813.1| RluA family pseudouridine synthase [Enterococcus faecium E2134]
gi|431748515|ref|ZP_19537272.1| RluA family pseudouridine synthase [Enterococcus faecium E2297]
gi|431754618|ref|ZP_19543279.1| RluA family pseudouridine synthase [Enterococcus faecium E2883]
gi|431770610|ref|ZP_19559010.1| RluA family pseudouridine synthase [Enterococcus faecium E1644]
gi|431773136|ref|ZP_19561469.1| RluA family pseudouridine synthase [Enterococcus faecium E2369]
gi|431775999|ref|ZP_19564268.1| RluA family pseudouridine synthase [Enterococcus faecium E2560]
gi|431778534|ref|ZP_19566745.1| RluA family pseudouridine synthase [Enterococcus faecium E4389]
gi|431782102|ref|ZP_19570240.1| RluA family pseudouridine synthase [Enterococcus faecium E6012]
gi|431785508|ref|ZP_19573533.1| RluA family pseudouridine synthase [Enterococcus faecium E6045]
gi|447913117|ref|YP_007394529.1| Ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium NRRL B-2354]
gi|257812454|gb|EEV41212.1| pseudouridylate synthase [Enterococcus faecium 1,230,933]
gi|257816652|gb|EEV43980.1| pseudouridylate synthase [Enterococcus faecium 1,231,502]
gi|257825936|gb|EEV52562.1| pseudouridylate synthase [Enterococcus faecium 1,231,410]
gi|257828863|gb|EEV55470.1| pseudouridylate synthase [Enterococcus faecium 1,231,408]
gi|260074000|gb|EEW62323.1| pseudouridylate synthase [Enterococcus faecium C68]
gi|291587594|gb|EFF19471.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1071]
gi|291598739|gb|EFF29792.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium U0317]
gi|291606712|gb|EFF36104.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1162]
gi|313590103|gb|EFR68948.1| pseudouridine synthase, RluA family [Enterococcus faecium
TX0133a01]
gi|313593425|gb|EFR72270.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133B]
gi|313595508|gb|EFR74353.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133A]
gi|313599436|gb|EFR78279.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0133C]
gi|313640970|gb|EFS05550.1| pseudouridine synthase, RluA family [Enterococcus faecium
TX0133a04]
gi|313645284|gb|EFS09864.1| pseudouridine synthase, RluA family [Enterococcus faecium TX0082]
gi|364089059|gb|EHM31781.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E4453]
gi|378937985|gb|AFC63057.1| pseudouridine synthase, RluA family [Enterococcus faecium Aus0004]
gi|388533779|gb|AFK58971.1| pseudouridylate synthase [Enterococcus faecium DO]
gi|402920777|gb|EJX41265.1| pseudouridine synthase, RluA family [Enterococcus faecium V689]
gi|402924802|gb|EJX44990.1| pseudouridine synthase, RluA family [Enterococcus faecium S447]
gi|402929095|gb|EJX48889.1| pseudouridine synthase, RluA family [Enterococcus faecium R499]
gi|402929667|gb|EJX49405.1| pseudouridine synthase, RluA family [Enterococcus faecium R497]
gi|402933179|gb|EJX52634.1| pseudouridine synthase, RluA family [Enterococcus faecium R496]
gi|402937617|gb|EJX56719.1| pseudouridine synthase, RluA family [Enterococcus faecium R494]
gi|402947438|gb|EJX65648.1| pseudouridine synthase, RluA family [Enterococcus faecium R446]
gi|402948129|gb|EJX66294.1| pseudouridine synthase, RluA family [Enterococcus faecium P1190]
gi|402949976|gb|EJX68001.1| pseudouridine synthase, RluA family [Enterococcus faecium P1140]
gi|402951210|gb|EJX69159.1| pseudouridine synthase, RluA family [Enterococcus faecium P1986]
gi|402954282|gb|EJX71918.1| pseudouridine synthase, RluA family [Enterococcus faecium P1137]
gi|402957504|gb|EJX74892.1| pseudouridine synthase, RluA family [Enterococcus faecium P1123]
gi|402960500|gb|EJX77637.1| pseudouridine synthase, RluA family [Enterococcus faecium P1139]
gi|402963258|gb|EJX80143.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV99]
gi|402971822|gb|EJX88067.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV69]
gi|402973029|gb|EJX89182.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV38]
gi|402976157|gb|EJX92072.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV26]
gi|402981680|gb|EJX97195.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV168]
gi|402986753|gb|EJY01862.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV165]
gi|402989884|gb|EJY04786.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV161]
gi|402990538|gb|EJY05408.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV102]
gi|402994548|gb|EJY09074.1| pseudouridine synthase, RluA family [Enterococcus faecium ERV1]
gi|402999798|gb|EJY13969.1| pseudouridine synthase, RluA family [Enterococcus faecium E417]
gi|403001579|gb|EJY15625.1| pseudouridine synthase, RluA family [Enterococcus faecium E422]
gi|403007115|gb|EJY20710.1| pseudouridine synthase, RluA family [Enterococcus faecium C621]
gi|403009283|gb|EJY22740.1| pseudouridine synthase, RluA family [Enterococcus faecium C1904]
gi|403011007|gb|EJY24345.1| pseudouridine synthase, RluA family [Enterococcus faecium C497]
gi|403016436|gb|EJY29254.1| pseudouridine synthase, RluA family [Enterococcus faecium 515]
gi|403017943|gb|EJY30664.1| pseudouridine synthase, RluA family [Enterococcus faecium 514]
gi|403020389|gb|EJY32931.1| pseudouridine synthase, RluA family [Enterococcus faecium 513]
gi|403027699|gb|EJY39574.1| pseudouridine synthase, RluA family [Enterococcus faecium 511]
gi|403028578|gb|EJY40396.1| pseudouridine synthase, RluA family [Enterococcus faecium 506]
gi|403030860|gb|EJY42514.1| pseudouridine synthase, RluA family [Enterococcus faecium 510]
gi|403033618|gb|EJY45110.1| pseudouridine synthase, RluA family [Enterococcus faecium 509]
gi|403042820|gb|EJY53762.1| pseudouridine synthase, RluA family [Enterococcus faecium 503]
gi|404452818|gb|EJZ99969.1| RluA family pseudouridine synthase [Enterococcus sp. GMD4E]
gi|404456387|gb|EKA03110.1| RluA family pseudouridine synthase [Enterococcus sp. GMD3E]
gi|404461969|gb|EKA07817.1| RluA family pseudouridine synthase [Enterococcus sp. GMD2E]
gi|404467838|gb|EKA12898.1| RluA family pseudouridine synthase [Enterococcus sp. GMD1E]
gi|410734089|gb|EKQ76010.1| pseudouridylate synthase [Enterococcus sp. GMD5E]
gi|425724078|gb|EKU86962.1| RluA family pseudouridine synthase [Enterococcus durans
FB129-CNAB-4]
gi|430483115|gb|ELA60214.1| RluA family pseudouridine synthase [Enterococcus faecium E0333]
gi|430496886|gb|ELA72945.1| RluA family pseudouridine synthase [Enterococcus faecium E1050]
gi|430539070|gb|ELA79332.1| RluA family pseudouridine synthase [Enterococcus faecium E1133]
gi|430548274|gb|ELA88179.1| RluA family pseudouridine synthase [Enterococcus faecium E1392]
gi|430549472|gb|ELA89304.1| RluA family pseudouridine synthase [Enterococcus faecium E1573]
gi|430556389|gb|ELA95897.1| RluA family pseudouridine synthase [Enterococcus faecium E1576]
gi|430560850|gb|ELB00142.1| RluA family pseudouridine synthase [Enterococcus faecium E1578]
gi|430574896|gb|ELB13659.1| RluA family pseudouridine synthase [Enterococcus faecium E1622]
gi|430577040|gb|ELB15645.1| RluA family pseudouridine synthase [Enterococcus faecium E1623]
gi|430583682|gb|ELB22040.1| RluA family pseudouridine synthase [Enterococcus faecium E1627]
gi|430588115|gb|ELB26320.1| RluA family pseudouridine synthase [Enterococcus faecium E1634]
gi|430593945|gb|ELB31920.1| RluA family pseudouridine synthase [Enterococcus faecium E1731]
gi|430609616|gb|ELB46800.1| RluA family pseudouridine synthase [Enterococcus faecium E2134]
gi|430613436|gb|ELB50446.1| RluA family pseudouridine synthase [Enterococcus faecium E2297]
gi|430619212|gb|ELB56040.1| RluA family pseudouridine synthase [Enterococcus faecium E2883]
gi|430635537|gb|ELB71633.1| RluA family pseudouridine synthase [Enterococcus faecium E1644]
gi|430637203|gb|ELB73236.1| RluA family pseudouridine synthase [Enterococcus faecium E2369]
gi|430642114|gb|ELB77897.1| RluA family pseudouridine synthase [Enterococcus faecium E2560]
gi|430644080|gb|ELB79783.1| RluA family pseudouridine synthase [Enterococcus faecium E4389]
gi|430647477|gb|ELB82923.1| RluA family pseudouridine synthase [Enterococcus faecium E6045]
gi|430648117|gb|ELB83540.1| RluA family pseudouridine synthase [Enterococcus faecium E6012]
gi|445188826|gb|AGE30468.1| Ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium NRRL B-2354]
Length = 303
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q +++G VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIHHESG--RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|430837884|ref|ZP_19455834.1| RluA family pseudouridine synthase [Enterococcus faecium E0688]
gi|430858355|ref|ZP_19475983.1| RluA family pseudouridine synthase [Enterococcus faecium E1552]
gi|430492164|gb|ELA68578.1| RluA family pseudouridine synthase [Enterococcus faecium E0688]
gi|430545564|gb|ELA85537.1| RluA family pseudouridine synthase [Enterococcus faecium E1552]
Length = 303
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q +++G VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIHHESG--RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|354582313|ref|ZP_09001215.1| pseudouridine synthase, RluA family [Paenibacillus lactis 154]
gi|353199712|gb|EHB65174.1| pseudouridine synthase, RluA family [Paenibacillus lactis 154]
Length = 322
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 101/171 (59%), Gaps = 26/171 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E VD ++ K R+D +I+ + + +SR++VQ I G V +N V K ++ V GD +
Sbjct: 23 EWIVDAESAKTRIDKYITDGLAEDVSRSQVQLWIADGHVLVNDSPV-KANYKVSQGDRIA 81
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
TI + EDIPLDI YED +V+VVNKP MVVHPAPG+ +GTLVN ++HHC
Sbjct: 82 LTIPAPSVVEIVPEDIPLDIAYEDRDVIVVNKPRGMVVHPAPGHVSGTLVNALMHHC--- 138
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK T+GL++ AK
Sbjct: 139 -------------KDL-------SGING-ELRPGIVHRIDKDTTGLIMAAK 168
>gi|148257971|ref|YP_001242556.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobium
sp. BTAi1]
gi|146410144|gb|ABQ38650.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobium
sp. BTAi1]
Length = 326
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 96/162 (59%), Gaps = 23/162 (14%)
Query: 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
G RLD +++R+ +SR+R+++ I +G VS++ V +++V GD + + E P
Sbjct: 10 GSPRLDRVLAARLPELSRSRLKALILAGQVSLSTGAVRDPAYHVASGDTITIDVPEAAPP 69
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
+AE IPL +VYEDD+++V++KPA +VVHPA G+ TGTLVN ++ HC
Sbjct: 70 EPKAEAIPLHVVYEDDDIVVLDKPAGLVVHPAAGHETGTLVNALIAHCG----------- 118
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK T+GL+VVAK
Sbjct: 119 ------------ASLSGIGGVKRPGIVHRLDKDTTGLMVVAK 148
>gi|339451882|ref|ZP_08655252.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc lactis KCTC
3528]
Length = 166
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+DA ++++ SR + + ++SG V +NGQ V + S+ V GD+++ +QP
Sbjct: 15 RIDAILANQNLPYSRTVLANWVQSGEVLVNGQRVKR-SYKVTAGDVISIQPPVVQPTEIV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE +PLDIVYED ++LVVNKP MVVHPA G+ +GTLVNG+LHH L T+
Sbjct: 74 AEAMPLDIVYEDADLLVVNKPQGMVVHPAAGHTSGTLVNGLLHHAPLSTI---------- 123
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ EF RPGIVHR+D+ TSGLL+VAK
Sbjct: 124 ------NGEF---------RPGIVHRIDRDTSGLLMVAK 147
>gi|423332645|ref|ZP_17310427.1| pseudouridylate synthase [Lactobacillus reuteri ATCC 53608]
gi|337727763|emb|CCC02849.1| pseudouridylate synthase [Lactobacillus reuteri ATCC 53608]
Length = 303
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE T+D++ R+D + D SR+++Q I G V +NG+ V K + + GD +
Sbjct: 4 ELELTIDSEMVG-RIDKQLGHHFDQFSRSQIQHWIEDGHVLVNGKQV-KPKYKLLVGDHI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
E Q + E+IPLDIVYED++V+VVNKP MVVHPAPG+ TLVN +L+H L
Sbjct: 62 QIIPEEPQKIDLTPENIPLDIVYEDEDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHSPL 121
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 122 ------------------------STING-EFRPGIVHRIDKDTSGLLMVAK 148
>gi|15606824|ref|NP_214204.1| hypothetical protein aq_1758 [Aquifex aeolicus VF5]
gi|3915479|sp|O67638.1|Y1758_AQUAE RecName: Full=Uncharacterized RNA pseudouridine synthase aq_1758;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|2984062|gb|AAC07603.1| hypothetical protein aq_1758 [Aquifex aeolicus VF5]
Length = 316
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ SR+ ++ ++ GLV +NG+ V K S ++ G+ V + E +PL +
Sbjct: 17 RLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERVILHVPEPEPLDVK 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IP++I+YED+++ VV KP +VVHP+PG +GTLVN +L+H
Sbjct: 77 PENIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYH---------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I D SSI G RPGIVHRLDK T+G++V+AK
Sbjct: 121 ---IKD----LSSIGGVE-RPGIVHRLDKETAGVMVIAK 151
>gi|390453155|ref|ZP_10238683.1| RNA pseudouridine synthase ylyb [Paenibacillus peoriae KCTC 3763]
Length = 323
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 101/161 (62%), Gaps = 25/161 (15%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K R+D +I+ +++ +SR+++Q I +GLV +NG + K ++ + GD + ++ E + +
Sbjct: 34 KTRIDKYIAEKMEDVSRSQIQLWIGNGLVLVNGSAI-KANYKLAEGDRIELSVPEPESVD 92
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
E+IPLD+VYED +V+V+NK +VVHPAPG+ +GTLVN +++HC
Sbjct: 93 IVPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHTSGTLVNALMYHC------------- 139
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGL++ AK
Sbjct: 140 ---HDL-------SGING-ELRPGIVHRIDKDTSGLIMAAK 169
>gi|288962534|ref|YP_003452829.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
gi|288914800|dbj|BAI76285.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
Length = 363
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 94/166 (56%), Gaps = 24/166 (14%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
DT AG+ RLD +S+ + +SR+RVQ+ + G V +G+ ++ S VK G + +
Sbjct: 48 DTAAGQ-RLDKALSAGLPDLSRSRVQALLEQGCVRGDGRTITDPSQRVKYGQIFELRMPG 106
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
+DIPLD+VYED +VLVV+KPA +VVHPA GN GTLVN +L HC
Sbjct: 107 SAAAEPLPQDIPLDVVYEDADVLVVDKPAGLVVHPAAGNPDGTLVNALLAHCG------- 159
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSGL+VVAK
Sbjct: 160 ---------------DSLSGIGGVR-RPGIVHRLDKDTSGLMVVAK 189
>gi|171778236|ref|ZP_02919442.1| hypothetical protein STRINF_00281 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282936|gb|EDT48360.1| pseudouridine synthase, RluA family [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 298
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 98/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ D +SR++ I+ G V +NG+ V K + VK GD+V + E + L +
Sbjct: 11 RLDKALADLTD-LSRSQANDEIKKGTVLVNGKAV-KAKYAVKVGDVVTYEVPEEEVLEYK 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED++V VV KP MVVHP+ G+ +GTLVN +++H
Sbjct: 69 AENIPLDIVYEDEDVAVVYKPQGMVVHPSAGHTSGTLVNALMYHI--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 114 -KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAK 143
>gi|402309570|ref|ZP_10828563.1| pseudouridine synthase, RluA family [Eubacterium sp. AS15]
gi|400372537|gb|EJP25481.1| pseudouridine synthase, RluA family [Eubacterium sp. AS15]
Length = 300
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 95/164 (57%), Gaps = 25/164 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++ +++ +SR+++QS I SG +S+NG +K S +K GD V E
Sbjct: 14 IRLDVYLGDKLE-LSRSKIQSLIESGNISLNGNK-AKASVKLKTGDTVYVNYQEENKAEI 71
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+A+DI LDIVYEDD+VLVVNKP MV H A GN GTLVN +L++
Sbjct: 72 KAQDIALDIVYEDDDVLVVNKPRGMVTHVANGNHEGTLVNALLYYLK------------- 118
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+DI S+ R GIVHR+DK TSGLLVVAK FS
Sbjct: 119 --DDI--------SLQNGMYRAGIVHRIDKDTSGLLVVAKNDFS 152
>gi|383763883|ref|YP_005442865.1| putative pseudouridine synthase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384151|dbj|BAM00968.1| putative pseudouridine synthase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 325
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 98/171 (57%), Gaps = 33/171 (19%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ AG+ R+D W++ R+ SR+ +Q IR GLV I G+ V K ++ G +
Sbjct: 11 VEDDAGQ-RIDRWLADRMPERSRSEIQRWIRQGLVRIEGRPV-KPGQRIEPGQQITV--- 65
Query: 124 ELQPLRAEA----EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
E+ P E E I L+IVYEDD++LV++KPA MVVHP+PG+A+GTLV+ +LHHC P
Sbjct: 66 EIPPSPVETTLAPEAIALNIVYEDDDLLVIDKPAGMVVHPSPGHASGTLVHAVLHHC--P 123
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ G RPGIVHRLDK TSGL+VVAK
Sbjct: 124 QIEG----------------------VGGEQRPGIVHRLDKDTSGLIVVAK 152
>gi|319405172|emb|CBI78777.1| ribosomal large subunit pseudouridine synthase D [Bartonella sp. AR
15-3]
Length = 333
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 96/160 (60%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D W++ + + +SR+R+Q+ IR G + I+GQ++ + +K ++ TI R
Sbjct: 14 RIDQWLAKQYKEELSRSRLQTLIREGYLKIDGQLIKEPKIKLKSNQIIELTIPTPNDARP 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ E + LDI++ED++V+V+NKPA +VVHP GN TGTLVN +++HCS
Sbjct: 74 QGEALALDILFEDNHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCS------------- 120
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++V+AK
Sbjct: 121 ---------DSLSGIGGIK-RPGIVHRLDKDTSGVMVIAK 150
>gi|225858727|ref|YP_002740237.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae 70585]
gi|225722071|gb|ACO17925.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae 70585]
Length = 295
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSFANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|148996979|ref|ZP_01824633.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP11-BS70]
gi|168491017|ref|ZP_02715160.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC0288-04]
gi|168575592|ref|ZP_02721528.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae MLV-016]
gi|237651118|ref|ZP_04525370.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CCRI 1974]
gi|237821884|ref|ZP_04597729.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae CCRI 1974M2]
gi|307067586|ref|YP_003876552.1| 23S RNA-specific pseudouridylate synthase [Streptococcus pneumoniae
AP200]
gi|405761056|ref|YP_006701652.1| RNA pseudouridylate synthase [Streptococcus pneumoniae SPNA45]
gi|418143738|ref|ZP_12780538.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13494]
gi|418193557|ref|ZP_12830049.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47439]
gi|419457307|ref|ZP_13997252.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02254]
gi|419470884|ref|ZP_14010743.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07914]
gi|419481952|ref|ZP_14021745.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40563]
gi|419503742|ref|ZP_14043411.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47760]
gi|421238560|ref|ZP_15695129.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2071247]
gi|421244751|ref|ZP_15701253.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2081685]
gi|421314096|ref|ZP_15764686.1| pseudouridine synthase [Streptococcus pneumoniae GA47562]
gi|147756679|gb|EDK63719.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP11-BS70]
gi|183574680|gb|EDT95208.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC0288-04]
gi|183578513|gb|EDT99041.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae MLV-016]
gi|306409123|gb|ADM84550.1| Pseudouridylate synthase, 23S RNA-specific [Streptococcus
pneumoniae AP200]
gi|353809479|gb|EHD89739.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13494]
gi|353859537|gb|EHE39487.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47439]
gi|379532305|gb|EHY97534.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02254]
gi|379545600|gb|EHZ10739.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA07914]
gi|379580826|gb|EHZ45715.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA40563]
gi|379606419|gb|EHZ71166.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47760]
gi|395603147|gb|EJG63288.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2071247]
gi|395609928|gb|EJG70012.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2081685]
gi|395914596|gb|EJH25440.1| pseudouridine synthase [Streptococcus pneumoniae GA47562]
gi|404277945|emb|CCM08515.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
SPNA45]
Length = 295
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|15902874|ref|NP_358424.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae R6]
gi|116515398|ref|YP_816303.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae D39]
gi|148988365|ref|ZP_01819812.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP6-BS73]
gi|168482999|ref|ZP_02707951.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC1873-00]
gi|387626289|ref|YP_006062462.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
INV104]
gi|417696119|ref|ZP_12345298.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47368]
gi|418091674|ref|ZP_12728816.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44452]
gi|418107319|ref|ZP_12744357.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41410]
gi|418109895|ref|ZP_12746920.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49447]
gi|418148354|ref|ZP_12785119.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13856]
gi|418161981|ref|ZP_12798668.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17328]
gi|418169030|ref|ZP_12805674.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19077]
gi|418175745|ref|ZP_12812342.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41437]
gi|418218673|ref|ZP_12845340.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP127]
gi|418220982|ref|ZP_12847636.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47751]
gi|418238506|ref|ZP_12865061.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|419422829|ref|ZP_13963045.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43264]
gi|419459773|ref|ZP_13999706.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02270]
gi|419462091|ref|ZP_14002001.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02714]
gi|419488867|ref|ZP_14028617.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44386]
gi|419495244|ref|ZP_14034962.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47461]
gi|419525679|ref|ZP_14065243.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14373]
gi|421231698|ref|ZP_15688343.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2080076]
gi|421265954|ref|ZP_15716837.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR27]
gi|421272583|ref|ZP_15723427.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR55]
gi|421303146|ref|ZP_15753810.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|421307199|ref|ZP_15757844.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
gi|444382206|ref|ZP_21180410.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS8106]
gi|444384766|ref|ZP_21182857.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS8203]
gi|15458431|gb|AAK99634.1| 23S rRNA pseudouridine synthase (supresses ftsH(ts) mutants)
[Streptococcus pneumoniae R6]
gi|116075974|gb|ABJ53694.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae D39]
gi|147926046|gb|EDK77120.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae SP6-BS73]
gi|172043419|gb|EDT51465.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae CDC1873-00]
gi|301794072|emb|CBW36476.1| putative RNA pseudouridylate synthase [Streptococcus pneumoniae
INV104]
gi|332201394|gb|EGJ15464.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47368]
gi|353763774|gb|EHD44324.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44452]
gi|353779502|gb|EHD59966.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41410]
gi|353782807|gb|EHD63237.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49447]
gi|353813029|gb|EHD93262.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13856]
gi|353828364|gb|EHE08504.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA17328]
gi|353834872|gb|EHE14968.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA19077]
gi|353842313|gb|EHE22360.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA41437]
gi|353875328|gb|EHE55180.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NP127]
gi|353875905|gb|EHE55755.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47751]
gi|353894256|gb|EHE73998.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|379532799|gb|EHY98023.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02270]
gi|379532937|gb|EHY98160.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA02714]
gi|379559153|gb|EHZ24183.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA14373]
gi|379587760|gb|EHZ52607.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA44386]
gi|379588287|gb|EHZ53132.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43264]
gi|379595326|gb|EHZ60134.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47461]
gi|395596188|gb|EJG56410.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2080076]
gi|395868690|gb|EJG79807.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR27]
gi|395875692|gb|EJG86770.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae SPAR55]
gi|395901768|gb|EJH12704.1| pseudouridine synthase [Streptococcus pneumoniae GA17484]
gi|395908300|gb|EJH19182.1| pseudouridine synthase [Streptococcus pneumoniae GA60132]
gi|444251526|gb|ELU57995.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS8203]
gi|444253166|gb|ELU59625.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS8106]
Length = 295
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|310828904|ref|YP_003961261.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
limosum KIST612]
gi|308740638|gb|ADO38298.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
limosum KIST612]
Length = 307
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 26/166 (15%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
+ KAG +RLDA+ + + SR +++ + G V ++G K S+ +KG +++ I E
Sbjct: 10 EEKAG-VRLDAYCAEQEPDFSRGYIKNLLNEGAVKVDGGQ-KKASYKLKGKEIITMEIPE 67
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
E E+IPL+I+YED++V+VVNKP MVVHPAPG+ +GTLVN ++HH T A S
Sbjct: 68 PAESTIEPENIPLEIIYEDEDVIVVNKPKGMVVHPAPGSPSGTLVNALMHH----TGALS 123
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
N I+G RPGI+HR+DK TSGLL+VAK
Sbjct: 124 N-------------------INGV-YRPGIIHRIDKDTSGLLMVAK 149
>gi|430852585|ref|ZP_19470316.1| RluA family pseudouridine synthase [Enterococcus faecium E1258]
gi|430541419|gb|ELA81564.1| RluA family pseudouridine synthase [Enterococcus faecium E1258]
Length = 303
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q +++G VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIHHESG--RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVGPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|387761789|ref|YP_006068766.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius 57.I]
gi|339292556|gb|AEJ53903.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius 57.I]
Length = 296
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKALADLTE-LSRSQANEAIKAGTVLVNGKS-AKAKYAVKEGDVITYE 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|257884651|ref|ZP_05664304.1| pseudouridylate synthase [Enterococcus faecium 1,231,501]
gi|261207803|ref|ZP_05922488.1| pseudouridylate synthase [Enterococcus faecium TC 6]
gi|289566255|ref|ZP_06446687.1| RNA pseudouridine synthase ylyB [Enterococcus faecium D344SRF]
gi|294616594|ref|ZP_06696370.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1636]
gi|416131314|ref|ZP_11597685.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E4452]
gi|430820160|ref|ZP_19438797.1| RluA family pseudouridine synthase [Enterococcus faecium E0045]
gi|430822263|ref|ZP_19440842.1| RluA family pseudouridine synthase [Enterococcus faecium E0120]
gi|430825314|ref|ZP_19443519.1| RluA family pseudouridine synthase [Enterococcus faecium E0164]
gi|430828567|ref|ZP_19446687.1| RluA family pseudouridine synthase [Enterococcus faecium E0269]
gi|430849881|ref|ZP_19467648.1| RluA family pseudouridine synthase [Enterococcus faecium E1185]
gi|430864759|ref|ZP_19480584.1| RluA family pseudouridine synthase [Enterococcus faecium E1574]
gi|430870884|ref|ZP_19483471.1| RluA family pseudouridine synthase [Enterococcus faecium E1575]
gi|431195499|ref|ZP_19500477.1| RluA family pseudouridine synthase [Enterococcus faecium E1620]
gi|431295228|ref|ZP_19507116.1| RluA family pseudouridine synthase [Enterococcus faecium E1626]
gi|431620624|ref|ZP_19522789.1| RluA family pseudouridine synthase [Enterococcus faecium E1904]
gi|431743697|ref|ZP_19532573.1| RluA family pseudouridine synthase [Enterococcus faecium E2071]
gi|431765402|ref|ZP_19553916.1| RluA family pseudouridine synthase [Enterococcus faecium E4215]
gi|431766987|ref|ZP_19555447.1| RluA family pseudouridine synthase [Enterococcus faecium E1321]
gi|257820489|gb|EEV47637.1| pseudouridylate synthase [Enterococcus faecium 1,231,501]
gi|260078186|gb|EEW65892.1| pseudouridylate synthase [Enterococcus faecium TC 6]
gi|289161962|gb|EFD09830.1| RNA pseudouridine synthase ylyB [Enterococcus faecium D344SRF]
gi|291590544|gb|EFF22277.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1636]
gi|364093667|gb|EHM35915.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E4452]
gi|430439850|gb|ELA50160.1| RluA family pseudouridine synthase [Enterococcus faecium E0045]
gi|430443321|gb|ELA53306.1| RluA family pseudouridine synthase [Enterococcus faecium E0120]
gi|430446207|gb|ELA55892.1| RluA family pseudouridine synthase [Enterococcus faecium E0164]
gi|430483400|gb|ELA60478.1| RluA family pseudouridine synthase [Enterococcus faecium E0269]
gi|430536576|gb|ELA76943.1| RluA family pseudouridine synthase [Enterococcus faecium E1185]
gi|430553540|gb|ELA93226.1| RluA family pseudouridine synthase [Enterococcus faecium E1574]
gi|430558683|gb|ELA98094.1| RluA family pseudouridine synthase [Enterococcus faecium E1575]
gi|430571877|gb|ELB10751.1| RluA family pseudouridine synthase [Enterococcus faecium E1620]
gi|430581318|gb|ELB19763.1| RluA family pseudouridine synthase [Enterococcus faecium E1626]
gi|430603570|gb|ELB41088.1| RluA family pseudouridine synthase [Enterococcus faecium E1904]
gi|430606486|gb|ELB43837.1| RluA family pseudouridine synthase [Enterococcus faecium E2071]
gi|430628489|gb|ELB64924.1| RluA family pseudouridine synthase [Enterococcus faecium E4215]
gi|430631860|gb|ELB68160.1| RluA family pseudouridine synthase [Enterococcus faecium E1321]
Length = 303
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q +++G VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIHHESG--RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|418018315|ref|ZP_12657871.1| pseudouridine synthase [Streptococcus salivarius M18]
gi|345527164|gb|EGX30475.1| pseudouridine synthase [Streptococcus salivarius M18]
Length = 296
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKALAD-LTELSRSQANEAIKAGTVLVNGKS-AKAKYAVKEGDVITYE 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|228478264|ref|ZP_04062872.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius SK126]
gi|340399333|ref|YP_004728358.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|421451886|ref|ZP_15901247.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius K12]
gi|228249943|gb|EEK09213.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius SK126]
gi|338743326|emb|CCB93834.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|400182317|gb|EJO16579.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius K12]
Length = 296
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKALADLTE-LSRSQANEAIKAGTVLVNGKS-AKAKYAVKEGDVITYE 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|331091117|ref|ZP_08339959.1| hypothetical protein HMPREF9477_00602 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405339|gb|EGG84875.1| hypothetical protein HMPREF9477_00602 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 307
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 101/171 (59%), Gaps = 24/171 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + +R+D ++S ++D +SR+ +Q I+ +S+NG V K ++ V D+V TI
Sbjct: 8 INQEENGMRIDVFLSKKMDNVSRSYIQKLIKEKEISVNGMAV-KANYKVSANDIVQLTIP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+L E+IPLDI+YED ++L+VNKP MVVHP+P + TGTLVN ++++C
Sbjct: 67 DLSEPDILPENIPLDILYEDADILIVNKPKGMVVHPSPSHYTGTLVNALMYYC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
DD S I+G +RPGIVHR+D T+G L+V K F+
Sbjct: 120 ------------KDD---LSGINGV-MRPGIVHRIDMDTTGSLLVCKNDFA 154
>gi|303254977|ref|ZP_07341056.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS455]
gi|302598057|gb|EFL65124.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae BS455]
Length = 295
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|381166654|ref|ZP_09875868.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Phaeospirillum molischianum DSM 120]
gi|380684227|emb|CCG40680.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Phaeospirillum molischianum DSM 120]
Length = 347
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 92/169 (54%), Gaps = 23/169 (13%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E V RLD W++ R+ +SR+R++ I G VS++G + SH VK G +
Sbjct: 32 EPVSPDEAGQRLDKWLAMRLLDLSRSRIKGLIEDGRVSLDGPTILDPSHRVKPGQSCRVS 91
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ P EA+DI L +V+ED++++V++KP +VVHPAPGN TLVN +L HC
Sbjct: 92 VPPDAPAIPEAQDIALTVVHEDEDLIVIDKPPGLVVHPAPGNLDFTLVNALLAHCG---- 147
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + I G RPGIVHRLDK TSGLLV AK
Sbjct: 148 ------------------ESLAGIGGVR-RPGIVHRLDKDTSGLLVAAK 177
>gi|387783586|ref|YP_006069669.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
gi|338744468|emb|CCB94834.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
Length = 296
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKALADLTE-LSRSQANEAIKAGTVLVNGKS-AKAKYAVKEGDVITYE 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|410667646|ref|YP_006920017.1| pseudouridylate synthase RluA [Thermacetogenium phaeum DSM 12270]
gi|409105393|gb|AFV11518.1| pseudouridylate synthase RluA [Thermacetogenium phaeum DSM 12270]
Length = 313
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 26/171 (15%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
L E AGK RLD +++++ +SR+++Q I G V +N ++ S+ V+ GD+V
Sbjct: 8 LYEVTPDAAGK-RLDHFLAAQPPLLSRSQIQRLIERGFVLVNSSR-TRSSYKVRCGDVVT 65
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ + + + E+IPLDI+YED+++LV+NKP +VVHPA G+ +GTLVN +L+HC P
Sbjct: 66 MRVPPPEEITLKPEEIPLDIIYEDEDLLVINKPQGLVVHPAAGHKSGTLVNAVLNHC--P 123
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L+ G +RPGIVHRLDK TSGL++V+K
Sbjct: 124 KLSG----------------------IGGYLRPGIVHRLDKDTSGLILVSK 152
>gi|238927877|ref|ZP_04659637.1| pseudouridylate synthase [Selenomonas flueggei ATCC 43531]
gi|238884210|gb|EEQ47848.1| pseudouridylate synthase [Selenomonas flueggei ATCC 43531]
Length = 299
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ ++ +SR+ Q I G V+++G+ K + + G +MV CT+ +
Sbjct: 11 RLDVFLVRQMPALSRSYAQRLIAGGNVAVDGER-RKANFKLSGAEMVVCTLPPAEETEIC 69
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPLDI+YED +++V+NK MVVHPA G TGTLVN +LHHCS
Sbjct: 70 AEDIPLDILYEDADIIVINKRRGMVVHPAAGVHTGTLVNALLHHCS-------------- 115
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+GA +RPGIVHRLDK TSG++V AK
Sbjct: 116 --DL-------SGINGA-LRPGIVHRLDKDTSGVMVAAK 144
>gi|417810294|ref|ZP_12456973.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius GJ-24]
gi|335349090|gb|EGM50590.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius GJ-24]
Length = 298
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ +R++++ I G + +NG V K ++ V GD + E++ L E
Sbjct: 13 RLDKVVTNIFTDYTRSQLKKMIDDGHIKVNGDV-KKANYKVNLGDEITFDKPEVKKLSLE 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+VVNKP MVVHP+PG+ TLVN +L+H L
Sbjct: 72 PENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHSPL------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 119 -----------STING-TYRPGIVHRIDKDTSGLLMVAK 145
>gi|260663035|ref|ZP_05863928.1| pseudouridine synthase [Lactobacillus fermentum 28-3-CHN]
gi|260552656|gb|EEX25656.1| pseudouridine synthase [Lactobacillus fermentum 28-3-CHN]
Length = 304
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 91/159 (57%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D + SR++++ I G V++NGQ V K + ++ GD V + E
Sbjct: 17 RIDKELGHHFPQFSRSQLKRWIDDGTVTVNGQTV-KAKYQLQAGDRVVIEPETPVEIDLE 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN +++H L
Sbjct: 76 PENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALMYHAPL------------- 122
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 123 -----------SSING-ELRPGIVHRIDKDTSGLLMVAK 149
>gi|436835980|ref|YP_007321196.1| pseudouridine synthase, RluA family [Fibrella aestuarina BUZ 2]
gi|384067393|emb|CCH00603.1| pseudouridine synthase, RluA family [Fibrella aestuarina BUZ 2]
Length = 343
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 104/175 (59%), Gaps = 31/175 (17%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD LR+D ++ S++ +R ++Q++I +G + +NG+ +K S+ VK GD++ +S
Sbjct: 23 VDPGQTMLRIDRFLDSKLANATRTKLQAAIDAGGIQVNGKP-TKASYKVKPGDLI--VLS 79
Query: 124 ELQPLRAEA---EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLP 179
P R +DIPLDIVYED+ +LVVNKPA MVVHPA GN GTLVN +++H +LP
Sbjct: 80 LPHPPRETTVIPQDIPLDIVYEDNELLVVNKPAGMVVHPAHGNWDGTLVNALVYHMQNLP 139
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
T N E RPG+VHR+DK TSGL+V+AK ++
Sbjct: 140 T--GRNGEG----------------------RPGLVHRIDKDTSGLMVIAKTEYA 170
>gi|373498068|ref|ZP_09588583.1| RluA family pseudouridine synthase [Fusobacterium sp. 12_1B]
gi|371962108|gb|EHO79717.1| RluA family pseudouridine synthase [Fusobacterium sp. 12_1B]
Length = 313
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 105/184 (57%), Gaps = 32/184 (17%)
Query: 47 NNREPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVS 106
N +E I YA + GK R+D++++ ID +R+ +Q I G V I G+ V+
Sbjct: 3 NIKETITVYAD-------ENDKGK-RIDSFLNEVIDDATRSYIQKIIDGGYVEITGKKVT 54
Query: 107 KVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 166
K + +KG + + I E + L E+IPL+I+YED +++V+NK MVVHPA GN G
Sbjct: 55 KSGNKLKGTETITVNIPEDEILDVIPENIPLNIIYEDKDIVVINKAPDMVVHPAHGNYNG 114
Query: 167 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 226
TLVN +L+H +D+ S+I+G IRPGIVHRLDK TSG++
Sbjct: 115 TLVNALLYHI----------------KDL-------STINGV-IRPGIVHRLDKDTSGVI 150
Query: 227 VVAK 230
VVAK
Sbjct: 151 VVAK 154
>gi|309800529|ref|ZP_07694680.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis SK1302]
gi|308115840|gb|EFO53365.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis SK1302]
Length = 297
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G +RLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIERGGIRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYQVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|227890823|ref|ZP_04008628.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius ATCC 11741]
gi|227867232|gb|EEJ74653.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius ATCC 11741]
Length = 301
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ +R++++ I G + +NG V K ++ V GD + E++ L E
Sbjct: 16 RLDKVVTNIFTDYTRSQLKKMIDDGNIKVNGDV-KKANYKVNLGDEITFDKPEVKKLSLE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+VVNKP MVVHP+PG+ TLVN +L+H L
Sbjct: 75 PENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHSPL------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------STING-TYRPGIVHRIDKDTSGLLMVAK 148
>gi|404367672|ref|ZP_10973034.1| RluA family pseudouridine synthase [Fusobacterium ulcerans ATCC
49185]
gi|313688762|gb|EFS25597.1| RluA family pseudouridine synthase [Fusobacterium ulcerans ATCC
49185]
Length = 313
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 105/184 (57%), Gaps = 32/184 (17%)
Query: 47 NNREPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVS 106
N +E I YA + GK R+D++++ ID +R+ +Q I G V I G+ V+
Sbjct: 3 NIKETITVYAD-------ENDKGK-RIDSFLNEVIDDATRSYIQKIIDGGYVEITGKKVT 54
Query: 107 KVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 166
K + +KG + + I E + L E+IPL+I+YED +++V+NK MVVHPA GN G
Sbjct: 55 KSGNKLKGTETITVNIPEDEILDVIPENIPLNIIYEDKDIVVINKAPDMVVHPAHGNYNG 114
Query: 167 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 226
TLVN +L+H +D+ S+I+G IRPGIVHRLDK TSG++
Sbjct: 115 TLVNALLYHI----------------KDL-------STINGV-IRPGIVHRLDKDTSGVI 150
Query: 227 VVAK 230
VVAK
Sbjct: 151 VVAK 154
>gi|293553487|ref|ZP_06674115.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1039]
gi|430833308|ref|ZP_19451321.1| RluA family pseudouridine synthase [Enterococcus faecium E0679]
gi|291602364|gb|EFF32588.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1039]
gi|430486763|gb|ELA63599.1| RluA family pseudouridine synthase [Enterococcus faecium E0679]
Length = 303
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q +++G VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIHHESG--RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDDI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|85704967|ref|ZP_01036067.1| ribosomal large subunit pseudouridine synthase D [Roseovarius sp.
217]
gi|85670289|gb|EAQ25150.1| ribosomal large subunit pseudouridine synthase D [Roseovarius sp.
217]
Length = 342
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 88/162 (54%), Gaps = 26/162 (16%)
Query: 72 RLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD +S + +SR R+ + G V +NG V+ V GD++ + E +
Sbjct: 17 RLDKALSRDVPEEATLSRTRLARLLEEGAVQVNGAVMRDAKARVTAGDLIEILVPEARES 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
AE I L +VYEDD+++V+NKPA MVVHPAPG+ GTLVN +LHHC
Sbjct: 77 HISAEAIALTVVYEDDDLIVINKPAGMVVHPAPGSPEGTLVNALLHHCG----------- 125
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G S RPGIVHR+DK TSGLLVVAK
Sbjct: 126 ------------DSLSGVGGSKRPGIVHRIDKDTSGLLVVAK 155
>gi|418961352|ref|ZP_13513239.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius SMXD51]
gi|380345019|gb|EIA33365.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius SMXD51]
Length = 298
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ +R++++ I G + +NG V K ++ V GD + E++ L E
Sbjct: 13 RLDKVVTNIFTDYTRSQLKKMIDDGNIKVNGDV-KKANYKVNLGDEITFDKPEVKKLSLE 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+VVNKP MVVHP+PG+ TLVN +L+H L
Sbjct: 72 PENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHSPL------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 119 -----------STING-TYRPGIVHRIDKDTSGLLMVAK 145
>gi|301301197|ref|ZP_07207353.1| pseudouridine synthase, RluA family [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851196|gb|EFK78924.1| pseudouridine synthase, RluA family [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 298
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ +R++++ I G + +NG V K ++ V GD + E++ L E
Sbjct: 13 RLDKVVTNIFTDYTRSQLKKMIDDGNIKVNGDV-KKANYKVNLGDEITFDKPEVKKLSLE 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+VVNKP MVVHP+PG+ TLVN +L+H L
Sbjct: 72 PENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHSPL------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 119 -----------STING-TYRPGIVHRIDKDTSGLLMVAK 145
>gi|225856592|ref|YP_002738103.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae P1031]
gi|410476372|ref|YP_006743131.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae gamPNI0373]
gi|444388734|ref|ZP_21186708.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS125219]
gi|444389940|ref|ZP_21187855.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS70012]
gi|444393508|ref|ZP_21191153.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS81218]
gi|444395825|ref|ZP_21193364.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0002]
gi|444397385|ref|ZP_21194868.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0006]
gi|444399112|ref|ZP_21196584.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0007]
gi|444403348|ref|ZP_21200450.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0008]
gi|444405523|ref|ZP_21202399.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0009]
gi|444408601|ref|ZP_21205234.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0010]
gi|444409603|ref|ZP_21206191.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0076]
gi|444411719|ref|ZP_21208047.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0153]
gi|444415857|ref|ZP_21212078.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0199]
gi|444418513|ref|ZP_21214489.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0360]
gi|444420512|ref|ZP_21216291.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0427]
gi|444422565|ref|ZP_21218216.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0446]
gi|225724891|gb|ACO20743.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Streptococcus pneumoniae P1031]
gi|406369317|gb|AFS43007.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pneumoniae gamPNI0373]
gi|444248380|gb|ELU54889.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS125219]
gi|444255826|gb|ELU62166.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0002]
gi|444256403|gb|ELU62741.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS70012]
gi|444259284|gb|ELU65599.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PCS81218]
gi|444260042|gb|ELU66350.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0006]
gi|444264632|gb|ELU70695.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0008]
gi|444269298|gb|ELU75109.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0007]
gi|444269428|gb|ELU75235.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0010]
gi|444273134|gb|ELU78813.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0009]
gi|444275616|gb|ELU81238.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0153]
gi|444278844|gb|ELU84268.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0199]
gi|444279137|gb|ELU84547.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0076]
gi|444281303|gb|ELU86627.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0360]
gi|444284479|gb|ELU89617.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0427]
gi|444288071|gb|ELU92973.1| pseudouridine synthase, RluA family [Streptococcus pneumoniae
PNI0446]
Length = 295
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|383937986|ref|ZP_09991215.1| pseudouridine synthase, RluA family [Streptococcus pseudopneumoniae
SK674]
gi|418973487|ref|ZP_13521475.1| pseudouridine synthase, RluA family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383348746|gb|EID26704.1| pseudouridine synthase, RluA family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383715114|gb|EID71091.1| pseudouridine synthase, RluA family [Streptococcus pseudopneumoniae
SK674]
Length = 295
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|417788320|ref|ZP_12436003.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius NIAS840]
gi|334308497|gb|EGL99483.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius NIAS840]
Length = 298
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ +R++++ I G + +NG V K ++ V GD + E++ L E
Sbjct: 13 RLDKVVTNIFTDYTRSQLKKMIDDGNIKVNGDV-KKANYKVNLGDEITFDKPEVKKLSLE 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+VVNKP MVVHP+PG+ TLVN +L+H L
Sbjct: 72 PENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHSPL------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 119 -----------STING-TYRPGIVHRIDKDTSGLLMVAK 145
>gi|315282847|ref|ZP_07871166.1| ribosomal large subunit pseudouridine synthase D [Listeria marthii
FSL S4-120]
gi|313613517|gb|EFR87342.1| ribosomal large subunit pseudouridine synthase D [Listeria marthii
FSL S4-120]
Length = 302
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD ++
Sbjct: 8 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIHYEAR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|417917067|ref|ZP_12560629.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
SK236]
gi|342830716|gb|EGU65041.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
SK236]
Length = 296
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 96/159 (60%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SRA I+ G V +NG V K + VK GD++ + E++ + E
Sbjct: 11 RLDKALAD-LTTLSRAVANEQIKEGKVLVNG-TVKKAKYTVKEGDIIQYEVPEVEEVSYE 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+PLDIVYED +V+VVNK MVVHP+ G+ +GTLVN +L+H
Sbjct: 69 AEDLPLDIVYEDQDVVVVNKSQGMVVHPSAGHTSGTLVNALLYHV--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -KDL-------SGING-ELRPGIVHRIDKDTSGLLMIAK 143
>gi|90961803|ref|YP_535719.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius UCC118]
gi|385840423|ref|YP_005863747.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
gi|90820997|gb|ABD99636.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius UCC118]
gi|300214544|gb|ADJ78960.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
Length = 298
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ +R++++ I G + +NG V K ++ V GD + E++ L E
Sbjct: 13 RLDKVVTNIFTDYTRSQLKKMIDDGNIKVNGDV-KKANYKVNLGDEITFDKPEVKKLSLE 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+VVNKP MVVHP+PG+ TLVN +L+H L
Sbjct: 72 PENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHSPL------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 119 -----------STING-TYRPGIVHRIDKDTSGLLMVAK 145
>gi|294617890|ref|ZP_06697499.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1679]
gi|291595835|gb|EFF27119.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E1679]
Length = 303
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q +++G VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIHHESG--RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALIYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|21674122|ref|NP_662187.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
tepidum TLS]
gi|21647279|gb|AAM72529.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
tepidum TLS]
Length = 329
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ +R +VQ +I V +NG+ V K ++ +K D ++ T L+P
Sbjct: 12 MRIDRYLTQQVENATRNKVQKAIEEQRVLVNGKPV-KSNYRIKSCDHIHITF--LRPPAP 68
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+ I+YEDD+++V++K A MVVHPA GN TGTL N ILHH
Sbjct: 69 ELAPEDIPISILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLG----------- 117
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DA+D+ E +RPGIVHRLDK TSGL++VAK
Sbjct: 118 -KDADDLDKTE----------MRPGIVHRLDKDTSGLIIVAK 148
>gi|402312056|ref|ZP_10830986.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium
ICM7]
gi|400370717|gb|EJP23699.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium
ICM7]
Length = 304
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ ++ SR+ +Q I+ G +N + V K ++ ++ GD+V+ I + +PL
Sbjct: 16 RIDVFLAMNLESFSRSYIQDLIKKGKACVNKKAV-KANYRLRDGDIVDLAIPKPEPLEIL 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+V+++NKP MVVHPA G+ +GTLVN +L+HC
Sbjct: 75 PENIPLDIVYEDDDVILINKPKGMVVHPAAGHYSGTLVNALLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ S I+G +RPGIVHR+D T+G+++ K
Sbjct: 120 -------KDNLSGINGV-LRPGIVHRIDMDTTGIIIACK 150
>gi|184155639|ref|YP_001843979.1| pseudouridine synthase [Lactobacillus fermentum IFO 3956]
gi|183226983|dbj|BAG27499.1| pseudouridine synthase [Lactobacillus fermentum IFO 3956]
Length = 304
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 91/159 (57%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D + SR++++ I G V++NGQ V K + ++ GD V + E
Sbjct: 17 RIDKELGHHFPQFSRSQLKRWIDDGTVTVNGQTV-KAKYQLQAGDRVVIEPETPVEIDLE 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN +++H L
Sbjct: 76 PENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALMYHAPL------------- 122
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 123 -----------SSING-ELRPGIVHRIDKDTSGLLMVAK 149
>gi|392394868|ref|YP_006431470.1| ribosomal large subunit pseudouridine synthase D
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390525946|gb|AFM01677.1| ribosomal large subunit pseudouridine synthase D
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 344
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 93/159 (58%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + G SR+ +Q I G V +NG K ++ V+ D + + + L+ E
Sbjct: 53 RLDVGVTEVV-GKSRSFIQGLIEDGHVLVNG-ASKKSNYKVRTKDKITVVLPPPKELQVE 110
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPL+I+YED++VLVVNKP MVVHPAPG T TLVN +L+HC
Sbjct: 111 AEDIPLEILYEDEDVLVVNKPQGMVVHPAPGAWTKTLVNALLYHCR-------------- 156
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G +RPGIVHR+DK TSGLLVVAK
Sbjct: 157 ---------NLSGINGV-LRPGIVHRIDKDTSGLLVVAK 185
>gi|254556664|ref|YP_003063081.1| pseudouridylate synthase [Lactobacillus plantarum JDM1]
gi|254045591|gb|ACT62384.1| pseudouridylate synthase [Lactobacillus plantarum JDM1]
Length = 307
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 97/175 (55%), Gaps = 26/175 (14%)
Query: 56 AGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
AG E+ RLD +++ +R++V I++ V++NGQ+ + H VK G
Sbjct: 2 AGATTEQQFTITDQTGRLDKVLAALQSVWTRSQVDKLIKTDQVTVNGQLEASKYH-VKPG 60
Query: 116 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
D + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 61 DEIVVAAQTVQQTTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALLYH 120
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 121 SPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAK 150
>gi|322437152|ref|YP_004219364.1| pseudouridine synthase [Granulicella tundricola MP5ACTX9]
gi|321164879|gb|ADW70584.1| pseudouridine synthase, RluA family [Granulicella tundricola
MP5ACTX9]
Length = 371
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 96/172 (55%), Gaps = 27/172 (15%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT-IS 123
D A +RLDA+++ + ISRARVQ I +G V ++G V K +KGG+ +
Sbjct: 53 DVAAAGMRLDAYLAQALPDISRARVQILIEAGQVKVDG-AVPKAKAKLKGGETIEIEGQP 111
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA-----TGTLVNGILHHCSL 178
+L+PL A EDIPL IVYED+ + VVNKPA M+VH G+ GTLVN +L H
Sbjct: 112 QLEPLHAIPEDIPLQIVYEDEYLAVVNKPAGMMVHAGAGSTDDERNRGTLVNAVLFHMG- 170
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D S S G +RPGIVHRLDK TSGL+VVAK
Sbjct: 171 ---------------KTAD----SLSGVGGELRPGIVHRLDKQTSGLIVVAK 203
>gi|418086666|ref|ZP_12723836.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47033]
gi|418202207|ref|ZP_12838637.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA52306]
gi|419455331|ref|ZP_13995291.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP04]
gi|421284859|ref|ZP_15735636.1| pseudouridine synthase [Streptococcus pneumoniae GA60190]
gi|353758927|gb|EHD39513.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA47033]
gi|353868010|gb|EHE47900.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA52306]
gi|379629788|gb|EHZ94382.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae EU-NP04]
gi|395886838|gb|EJG97853.1| pseudouridine synthase [Streptococcus pneumoniae GA60190]
Length = 295
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHISGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|335029985|ref|ZP_08523484.1| pseudouridine synthase, RluA family [Streptococcus infantis SK1076]
gi|334267447|gb|EGL85907.1| pseudouridine synthase, RluA family [Streptococcus infantis SK1076]
Length = 296
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G +RLD +S + +SR+ I+SG V +NGQV K ++V+ GD++ +
Sbjct: 3 IKIETGGVRLDKALSDLTE-LSRSLANEQIKSGQVLVNGQV-KKAKYSVQEGDVITYQVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|373957356|ref|ZP_09617316.1| pseudouridine synthase, RluA family [Mucilaginibacter paludis DSM
18603]
gi|373893956|gb|EHQ29853.1| pseudouridine synthase, RluA family [Mucilaginibacter paludis DSM
18603]
Length = 347
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 102/179 (56%), Gaps = 37/179 (20%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
L VD LR+D ++ R++ SR R+Q++I G V +N + + K S+ VK D++
Sbjct: 18 HLRIVVDKGQSLLRIDKFLMHRVENASRNRIQNAIELGNVLVNDKAI-KSSYKVKPLDVI 76
Query: 119 NCTI------SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
+ + +E+ P E+IPLDIVYEDD+VLVVNKPA +VVHP N TGTLVNG+
Sbjct: 77 SVVLPHPPRDTEVYP-----ENIPLDIVYEDDDVLVVNKPAGLVVHPGYNNYTGTLVNGL 131
Query: 173 LHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++H LPTL G RPG+VHR+DK TSGLL+++K
Sbjct: 132 VYHFQQLPTLP------------------------GNDGRPGLVHRIDKDTSGLLLISK 166
>gi|308180606|ref|YP_003924734.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032591|ref|YP_004889582.1| RNA pseudouridylate synthase [Lactobacillus plantarum WCFS1]
gi|448821292|ref|YP_007414454.1| Pseudouridine synthase [Lactobacillus plantarum ZJ316]
gi|308046097|gb|ADN98640.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342241834|emb|CCC79068.1| RNA pseudouridylate synthase [Lactobacillus plantarum WCFS1]
gi|448274789|gb|AGE39308.1| Pseudouridine synthase [Lactobacillus plantarum ZJ316]
Length = 307
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 97/175 (55%), Gaps = 26/175 (14%)
Query: 56 AGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
AG E+ RLD +++ +R++V I++ V++NGQ+ + H VK G
Sbjct: 2 AGATTEQQFTITDQTGRLDKVLAALQSVWTRSQVDKLIKTDQVTVNGQLEASKYH-VKPG 60
Query: 116 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
D + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 61 DEIVVAAQTVQQTTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALLYH 120
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 121 SPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAK 150
>gi|189346997|ref|YP_001943526.1| RluA family pseudouridine synthase [Chlorobium limicola DSM 245]
gi|189341144|gb|ACD90547.1| pseudouridine synthase, RluA family [Chlorobium limicola DSM 245]
Length = 354
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ +R +VQ +I V +NG+ V K ++ +K D + T L+P
Sbjct: 38 MRIDKYLTQQVENATRNKVQEAIEEERVLVNGRPV-KSNYRIKSCDTILITF--LRPPAP 94
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+DIVYED +++VVNK MVVHPA GN TGTL N ILHH
Sbjct: 95 ELAPEDIPIDIVYEDSDLMVVNKEPGMVVHPAFGNWTGTLANAILHHIG----------- 143
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DAE S+ + +RPGIVHRLDK TSGL+++AK
Sbjct: 144 -RDAE----------SLDASELRPGIVHRLDKDTSGLIIIAK 174
>gi|307708571|ref|ZP_07645035.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
mitis NCTC 12261]
gi|307615320|gb|EFN94529.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
mitis NCTC 12261]
Length = 295
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDIVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE++PLDI+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAENLPLDIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|379012020|ref|YP_005269832.1| pseudouridine synthase RluA [Acetobacterium woodii DSM 1030]
gi|375302809|gb|AFA48943.1| pseudouridine synthase RluA [Acetobacterium woodii DSM 1030]
Length = 304
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 96/159 (60%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD + + SR ++ I +G V +NGQ KVS +KGG+ ++ I + +
Sbjct: 16 RLDHFCCTLPGDYSREYIKKLIGAGDVLVNGQK-KKVSLRLKGGETISLMIPDPIECHMQ 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPLDIV+ED++V+VVNKP MVVHPAPGN +GTLVNG++ H
Sbjct: 75 AEDIPLDIVFEDEDVIVVNKPQGMVVHPAPGNLSGTLVNGLIFHT--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S+I+G +RPGI+HR+DK TSGLL+VAK
Sbjct: 120 --------KNLSNINGV-LRPGIIHRIDKDTSGLLMVAK 149
>gi|114775487|ref|ZP_01451055.1| possible pseudouridine synthase [Mariprofundus ferrooxydans PV-1]
gi|114553598|gb|EAU55979.1| possible pseudouridine synthase [Mariprofundus ferrooxydans PV-1]
Length = 325
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 105/170 (61%), Gaps = 28/170 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLV-SINGQVVSKVSHNVKGGDMVNCT 121
TV T+A RLDA +++ + +SR+R+Q+ +R G V + G V+S+ S V G+ T
Sbjct: 14 TVSTEASGKRLDAVLAAACE-LSRSRIQTLLREGHVRTAGGSVISQASARVWEGERYLLT 72
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPT 180
+ ++PL E ED+PLDI++ED++++V+NKPA +VVHP+ G+ GTLV+ +LHHC +LP
Sbjct: 73 LPPVKPLILEPEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHALLHHCKTLP- 131
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I+G RPGIVHRLDK TSG LV+AK
Sbjct: 132 -----------------------GINGVE-RPGIVHRLDKDTSGSLVIAK 157
>gi|352095567|ref|ZP_08956581.1| pseudouridine synthase, RluA family [Synechococcus sp. WH 8016]
gi|351678709|gb|EHA61854.1| pseudouridine synthase, RluA family [Synechococcus sp. WH 8016]
Length = 334
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 96/165 (58%), Gaps = 26/165 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ S+ SR+R+Q I +G V +NG+ K ++ GD V + +
Sbjct: 36 KPLPMRLDRWLVSQRSEQSRSRIQKFIDAGYVRVNGKT-GKAKTPLREGDQVQLWMPPPE 94
Query: 127 PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
PL + E + LD+++ED++++V+NKPA + VHPAPGN GTLVNG+LHHC P L
Sbjct: 95 PLPYLKPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHC--PDL---- 148
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPG+VHRLDK T+G +VVAK
Sbjct: 149 -----------------PGISG-KLRPGVVHRLDKDTTGCIVVAK 175
>gi|288905537|ref|YP_003430759.1| ribosomal large subunit pseudouridine synthase [Streptococcus
gallolyticus UCN34]
gi|386337983|ref|YP_006034152.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288732263|emb|CBI13830.1| putative ribosomal large subunit pseudouridine synthase
[Streptococcus gallolyticus UCN34]
gi|334280619|dbj|BAK28193.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 298
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 26/164 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD ++ + +SR++ I+ G V +NG+ V K + VK GD+V + + +
Sbjct: 6 KEAGVRLDKALADLTE-LSRSQANDEIKKGTVLVNGKAV-KAKYAVKVGDVVTYEVPKEE 63
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
L AE+IPLDI+YEDD+V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 64 VLEYTAENIPLDIIYEDDDVAVVNKPQGMVVHPSVGHMSGTLVNALMYHI---------- 113
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 114 ------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAK 143
>gi|163755786|ref|ZP_02162904.1| ribosomal large subunit pseudouridine synthase D [Kordia algicida
OT-1]
gi|161324307|gb|EDP95638.1| ribosomal large subunit pseudouridine synthase D [Kordia algicida
OT-1]
Length = 346
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 29/162 (17%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE--LQPL 128
LR+D ++ + I+G +R ++Q + + G + +NG+ V K ++ VKG D++ + + L
Sbjct: 31 LRVDKYLMNFIEGATRNKIQQAAKDGNIFVNGKPV-KSNYKVKGNDVIKVLFAHPPYENL 89
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
EDIP+DIVYEDD++LVVNKPA MVVHP GN +GTL+N +++H
Sbjct: 90 LV-GEDIPIDIVYEDDDLLVVNKPAGMVVHPGHGNYSGTLINALIYH------------- 135
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
F + ++ RPG+VHR+DK TSGLLVVAK
Sbjct: 136 ------------FDNLPKNSNERPGLVHRIDKDTSGLLVVAK 165
>gi|425058453|ref|ZP_18461834.1| pseudouridine synthase, RluA family [Enterococcus faecium 504]
gi|430836003|ref|ZP_19453988.1| RluA family pseudouridine synthase [Enterococcus faecium E0680]
gi|403038394|gb|EJY49610.1| pseudouridine synthase, RluA family [Enterococcus faecium 504]
gi|430488843|gb|ELA65491.1| RluA family pseudouridine synthase [Enterococcus faecium E0680]
Length = 303
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q +++G VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIHHESG--RIDKVLTNLFTDYSRSQIQLWLKNGAVSVNGQPV-KANYKVKQGDDI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|110597884|ref|ZP_01386166.1| Pseudouridine synthase, RluD [Chlorobium ferrooxidans DSM 13031]
gi|110340461|gb|EAT58947.1| Pseudouridine synthase, RluD [Chlorobium ferrooxidans DSM 13031]
Length = 349
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ +R +VQ +I G V +N + V K ++ +K D + T L+P
Sbjct: 34 MRIDQYLTRQVENATRNKVQEAIEEGRVLVNEKRV-KSNYRIKSCDTIQITF--LRPPAP 90
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+DI+YED++++V+NK MVVHPA GN TGTL N ILHH +
Sbjct: 91 ELAPEDIPIDIIYEDEDLMVINKKPGMVVHPAFGNWTGTLANAILHHIGI---------- 140
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
AE++ +S+RPGIVHRLDK TSGL++VAK
Sbjct: 141 --GAEELDK----------SSLRPGIVHRLDKNTSGLIIVAK 170
>gi|340757887|ref|ZP_08694479.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
varium ATCC 27725]
gi|251836173|gb|EES64710.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
varium ATCC 27725]
Length = 313
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D++++ ID +R+ +Q I G V I G+ V+K + +KG +++ I E + L
Sbjct: 20 RIDSFLNEIIDDATRSYIQKIIDGGYVEITGKKVTKSGNKLKGTEIIVVNIPEDEILNVV 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPL+I+YED +++++NK A+MVVHPA GN GTLVN +L+
Sbjct: 80 PENIPLNIIYEDKDIVIINKTANMVVHPAHGNYNGTLVNALLYQI--------------- 124
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHRLDK TSG++VVAK
Sbjct: 125 -KDL-------STINGV-IRPGIVHRLDKDTSGVIVVAK 154
>gi|406935811|gb|EKD69683.1| hypothetical protein ACD_47C00037G0004, partial [uncultured
bacterium]
Length = 225
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 27/161 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLV--SINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
RLD IS +IDG+SR+ I G V S++G++ ++ SH VK + + I E +PL
Sbjct: 18 RLDKLISDKIDGVSRSLAAKLISGGNVVSSVSGKL-TRPSHPVKENETITVYIPEAKPLD 76
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
+AE+I LDI+YED +++V+NK + MVVHPA G+++ TLVN ++ HC
Sbjct: 77 VKAENIHLDIIYEDSDLIVINKKSGMVVHPAAGHSSATLVNAVMGHC------------- 123
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI G IRPGIVHRLDK TSG++++AK
Sbjct: 124 ---KDL-------SSIGGV-IRPGIVHRLDKDTSGIIIIAK 153
>gi|384215677|ref|YP_005606843.1| hypothetical protein BJ6T_19750 [Bradyrhizobium japonicum USDA 6]
gi|354954576|dbj|BAL07255.1| hypothetical protein BJ6T_19750 [Bradyrhizobium japonicum USDA 6]
Length = 335
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 23/172 (13%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE V G RLD +++ + +SR+R+++ I +G VS+ + +++V GD +
Sbjct: 9 RLEVVVAGDEGSARLDRVLAAHLTDLSRSRLKALILAGAVSLRDAPIRDPAYHVTSGDTI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E P + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTLVN ++ HC
Sbjct: 69 TIDVPEAAPPEPKGEDIALDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLVNALIAHCG- 127
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK T+GL+VVAK
Sbjct: 128 ----------------------GSLSGIGGVRRPGIVHRLDKDTTGLMVVAK 157
>gi|398355003|ref|YP_006400467.1| ribosomal large subunit pseudouridine synthase D [Sinorhizobium
fredii USDA 257]
gi|390130329|gb|AFL53710.1| ribosomal large subunit pseudouridine synthase D [Sinorhizobium
fredii USDA 257]
Length = 342
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 91/160 (56%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLDA+++ + G SR R+++ I G VSING V + V GD + +
Sbjct: 24 RLDAFLTEALSGEFSRNRIKALIEQGAVSINGATVLEPKKKVHPGDSFEIVLPAPEDPEP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPLD++YEDD+++V+ KPA +VVHP GN TGTLVN ++HHC
Sbjct: 84 KGEDIPLDVLYEDDDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ---------DSLSGIGGVR-RPGIVHRLDKETSGVMVVAK 160
>gi|226313367|ref|YP_002773261.1| pseudouridine synthase [Brevibacillus brevis NBRC 100599]
gi|226096315|dbj|BAH44757.1| pseudouridine synthase [Brevibacillus brevis NBRC 100599]
Length = 309
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 104/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TVD R+D +I+ + + SR++VQ+ ++ G V++NG+ + K ++ ++ D V +
Sbjct: 13 TVDPADKNERIDKFITLQNEDWSRSQVQAWVKEGRVTVNGEPI-KNNYKLQAEDEVTLRV 71
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + + E++ LDIVYED +V+VVNKP +VVHPAPG+ +GTLVNG+L HC
Sbjct: 72 PPPKEMAIQPEEMSLDIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHC------ 125
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 126 ----------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 155
>gi|421242879|ref|ZP_15699400.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2081074]
gi|395609578|gb|EJG69664.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae 2081074]
Length = 295
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGCLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|419438029|ref|ZP_13978099.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13499]
gi|379538034|gb|EHZ03215.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13499]
Length = 292
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|418275350|ref|ZP_12890673.1| RNA pseudouridylate synthase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376008901|gb|EHS82230.1| RNA pseudouridylate synthase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 307
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 97/175 (55%), Gaps = 26/175 (14%)
Query: 56 AGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
AG E+ RLD +++ +R++V I++ V++NGQ+ + H VK G
Sbjct: 2 AGATTEQQFTITDQTGRLDKVLAALQSVWTRSQVDKLIKTDQVTVNGQLEASKYH-VKPG 60
Query: 116 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
D + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN +L+H
Sbjct: 61 DEIVVDAQTVQQTTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALLYH 120
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 121 SPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAK 150
>gi|255531126|ref|YP_003091498.1| RluA family pseudouridine synthase [Pedobacter heparinus DSM 2366]
gi|255344110|gb|ACU03436.1| pseudouridine synthase, RluA family [Pedobacter heparinus DSM 2366]
Length = 342
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 102/192 (53%), Gaps = 46/192 (23%)
Query: 55 YAGVQLEE---------TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVV 105
Y G +LEE VD LR+D ++ R++ SR R+Q++I +G V +N + V
Sbjct: 5 YTGPELEEQDLYEHFNIVVDKGQSLLRIDKFLMHRMENASRNRIQNAIEAGNVLVNQKTV 64
Query: 106 SKVSHNVKGGDMVNCTI------SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 159
K S+ VK D ++ +E+ P EDIPLDIVYED+++LVVNKPA MVVHP
Sbjct: 65 -KASYKVKPADEISIVFPHPPRDTEVYP-----EDIPLDIVYEDNDLLVVNKPAGMVVHP 118
Query: 160 APGNATGTLVNGI-LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 218
N TGTLVN + H LP L G RPG+VHR+
Sbjct: 119 GYNNYTGTLVNALAFHFEQLPQLP------------------------GNEGRPGLVHRI 154
Query: 219 DKGTSGLLVVAK 230
DK TSGLL+++K
Sbjct: 155 DKDTSGLLLISK 166
>gi|313884116|ref|ZP_07817882.1| pseudouridine synthase, RluA family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620563|gb|EFR31986.1| pseudouridine synthase, RluA family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 314
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 106/183 (57%), Gaps = 31/183 (16%)
Query: 48 NREPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSK 107
+R+ I QLE+ ++G RLD + + +SR ++QS I+ GLV++NGQV K
Sbjct: 4 DRKKIKEIIYFQLED----QSG--RLDKVLVEESE-LSRTQIQSLIKQGLVTVNGQV-EK 55
Query: 108 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 167
++ + G +++ + E + L EA+ IPLDI+YEDD++LV+NK A MVVHP+ G+ T
Sbjct: 56 ANYKLSGQELIEMQVPEEEVLEIEAQAIPLDIIYEDDDLLVINKEAGMVVHPSKGHPRDT 115
Query: 168 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227
LVN +++H A S+ S RPG+VHR+DK TSGLLV
Sbjct: 116 LVNALVYHFGNHLAAGSD-----------------------SYRPGLVHRIDKDTSGLLV 152
Query: 228 VAK 230
VAK
Sbjct: 153 VAK 155
>gi|126738738|ref|ZP_01754434.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
SK209-2-6]
gi|126719919|gb|EBA16626.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
SK209-2-6]
Length = 344
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 95/172 (55%), Gaps = 26/172 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
E V T+ RLD +S + +SR R+ I +G + ++G VV + G +
Sbjct: 7 EFVITENPPKRLDKAVSRDVPEEAALSRTRLARLIEAGSLLVDGVVVLDPKARIAEGAQI 66
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ T+ E + EDIPL+++YEDD+++V+NKPA MVVHPAPG +GTLVN +LHHC
Sbjct: 67 SITVEEAEDSHIGPEDIPLEVIYEDDDLIVINKPAGMVVHPAPGTPSGTLVNALLHHCG- 125
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S + G RPGIVHR+DK TSGLLVVAK
Sbjct: 126 ---------------------EKLSGVGGVK-RPGIVHRIDKETSGLLVVAK 155
>gi|113954535|ref|YP_731894.1| 23S RNA-specific pseudouridylate synthase [Synechococcus sp.
CC9311]
gi|113881886|gb|ABI46844.1| 23S RNA-specific pseudouridylate synthase [Synechococcus sp.
CC9311]
Length = 295
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 26/161 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL-R 129
+RLD W+ S+ SR+R+Q I +G V +NG+ K ++ GD V + +PL
Sbjct: 1 MRLDRWLVSQRSEQSRSRIQKFIDAGYVRVNGKT-GKAKTPLRNGDQVQLWMPPPEPLPY 59
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
+ E + LD+++ED++++V+NKPA + VHPAPGN GTLVNG+LHHC
Sbjct: 60 LKPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHC------------- 106
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ ISG +RPG+VHRLDK T+G +VVAK
Sbjct: 107 ---QDL-------PGISG-KLRPGVVHRLDKDTTGCIVVAK 136
>gi|417090374|ref|ZP_11955908.1| pseudouridine synthase, RluA family [Streptococcus suis R61]
gi|353533670|gb|EHC03319.1| pseudouridine synthase, RluA family [Streptococcus suis R61]
Length = 297
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V + G +RLD +S D +SR+ I++G V +NGQ K ++VK GD++ +
Sbjct: 3 VRVEVGGIRLDKALSDLTD-LSRSVANEQIKAGQVLVNGQP-KKAKYSVKAGDILTYQVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E++ + AEDIPL+IV++D++V VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 61 EVEEIDYVAEDIPLEIVFQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALLYHV------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGI-LRPGIVHRIDKDTSGLLMIAK 143
>gi|410458066|ref|ZP_11311830.1| pseudouridine synthase [Bacillus azotoformans LMG 9581]
gi|409931891|gb|EKN68865.1| pseudouridine synthase [Bacillus azotoformans LMG 9581]
Length = 303
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+ E T+ + R+D +S+ + SR++VQ I GLV++NG+ + K ++ K D +
Sbjct: 3 KFEATITSANENERIDKVLSTFNEEWSRSQVQQWINDGLVTVNGKDI-KGNYKCKLDDYI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E++ LDI YED +VLVVNKP MVVHPAPG+ +GTLVNG++ HC
Sbjct: 62 ELQIPEPEILDVLPEEMNLDIYYEDSDVLVVNKPKGMVVHPAPGHLSGTLVNGLMAHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|55820603|ref|YP_139045.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMG 18311]
gi|386086213|ref|YP_006002087.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
gi|55736588|gb|AAV60230.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMG 18311]
gi|312277926|gb|ADQ62583.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
Length = 296
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKSLAD-LTELSRSQANEAIKAGTVLVNGKS-AKAKYVVKEGDVITYV 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|284048842|ref|YP_003399181.1| RluA family pseudouridine synthase [Acidaminococcus fermentans DSM
20731]
gi|283953063|gb|ADB47866.1| pseudouridine synthase, RluA family [Acidaminococcus fermentans DSM
20731]
Length = 305
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 96/160 (60%), Gaps = 26/160 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LR D ++++R+D +R+ VQ I+ G V+ NG+ +K + VK GD+ + L A
Sbjct: 14 LRADVFLAARLD-CTRSAVQHDIQEGRVTRNGKP-AKANTKVKEGDVFQVQVLPPVDLEA 71
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E+IPLDI+YED +V+VVNKP MVVHPA GN GTLVN +L+HC
Sbjct: 72 RPENIPLDILYEDQDVIVVNKPRGMVVHPAAGNPDGTLVNALLYHC-------------- 117
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G IRPGIVHRLDK TSG+++ AK
Sbjct: 118 --RDL-------SGINGV-IRPGIVHRLDKDTSGVMICAK 147
>gi|335040592|ref|ZP_08533718.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
gi|334179562|gb|EGL82201.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
Length = 302
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 98/161 (60%), Gaps = 25/161 (15%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
++R+D +++ + SR ++Q+ I+ G V++NG+ V K ++ + D V + + L
Sbjct: 16 EMRIDKFLAEECEQWSRTQIQNWIKEGRVTVNGRPV-KANYKLSENDYVVLRVPPPRELS 74
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
E E + LDIVYED++VLVVNKP +VVHPAPG+ +GTLVNG+L HC
Sbjct: 75 IEPEQMDLDIVYEDEDVLVVNKPRGLVVHPAPGHYSGTLVNGLLAHC------------- 121
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 ----------QNLSGINGI-LRPGIVHRIDKDTSGLLMVAK 151
>gi|342163977|ref|YP_004768616.1| 23S rRNA pseudouridine synthase [Streptococcus pseudopneumoniae
IS7493]
gi|341933859|gb|AEL10756.1| 23S rRNA pseudouridine synthase [Streptococcus pseudopneumoniae
IS7493]
Length = 295
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+PL+I+Y+D++V +VNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLPLEIIYQDEDVAIVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|228992627|ref|ZP_04152553.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
pseudomycoides DSM 12442]
gi|229006175|ref|ZP_04163861.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock1-4]
gi|228755016|gb|EEM04375.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock1-4]
gi|228766959|gb|EEM15596.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
pseudomycoides DSM 12442]
Length = 302
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV + R+D +++ + SR++VQ I+ G+V++NG + K ++ VK D + I
Sbjct: 8 TVTEEQKSERIDKFLAGVNNEWSRSQVQQWIKDGVVTVNGNDI-KGNYKVKVNDEIAVAI 66
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ + L ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 67 PDPEELDILPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT----- 121
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 -----------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 150
>gi|114570956|ref|YP_757636.1| ribosomal large subunit pseudouridine synthase D [Maricaulis maris
MCS10]
gi|114341418|gb|ABI66698.1| ribosomal large subunit pseudouridine synthase D [Maricaulis maris
MCS10]
Length = 335
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 103/179 (57%), Gaps = 24/179 (13%)
Query: 52 IANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHN 111
+ + A + E + AG+ RLD W+++ ++ +SR+R+++ I +G V+++G V+ S
Sbjct: 1 MTDIAETRTLEATEEDAGQ-RLDRWLAASVESLSRSRLKALIEAGQVAVDGVAVTDPSAK 59
Query: 112 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171
V G I E + E + LD+++EDD+++V+NKPA + VHPA GN TGTLV+G
Sbjct: 60 VLAGSEYTVGIPEPRADTPTPEPMDLDVLHEDDHLIVINKPAGLSVHPAAGNWTGTLVHG 119
Query: 172 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+LHHC+ S S G RPGIVHRLDK TSG++VVAK
Sbjct: 120 LLHHCA-----------------------GSLSGIGGVERPGIVHRLDKETSGVMVVAK 155
>gi|323486916|ref|ZP_08092232.1| pseudouridine synthase [Clostridium symbiosum WAL-14163]
gi|323399779|gb|EGA92161.1| pseudouridine synthase [Clostridium symbiosum WAL-14163]
Length = 305
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 24/173 (13%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++ E V K+ LR+D +++ +R+ +Q ++S LV +NG+ V K S+ GD
Sbjct: 1 MKQEYIVPEKSSGLRIDKFLTESCPDYTRSFLQKLLKSELVEVNGKPV-KSSYKTAAGDT 59
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + E A+++PLDI+YED++V+++NKP MVVHPA G+ GTLVNG++HHC
Sbjct: 60 VTFEVPEAVEAEITAQEMPLDILYEDEDVILINKPKGMVVHPAAGHYEGTLVNGLMHHC- 118
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I+G +RPGIVHR+D T+G+L+V K
Sbjct: 119 ---------------------REQLSGINGV-MRPGIVHRIDMDTTGVLIVCK 149
>gi|289167775|ref|YP_003446044.1| 23S_rRNA pseudouridine synthase [Streptococcus mitis B6]
gi|288907342|emb|CBJ22179.1| 23S rRNA pseudouridine synthase [Streptococcus mitis B6]
Length = 295
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGSLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE+IPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAENIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|334127579|ref|ZP_08501491.1| ribosomal large subunit pseudouridine synthase D [Centipeda
periodontii DSM 2778]
gi|333389533|gb|EGK60698.1| ribosomal large subunit pseudouridine synthase D [Centipeda
periodontii DSM 2778]
Length = 302
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + SR+ +Q I LV+++G V K ++ ++GG+ + C + + +
Sbjct: 13 RLDVFLVRSMPDFSRSYLQRLIAEELVTVDG-VTRKANYKLRGGEQIACAVPAAEEVTIA 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPLD++YED +++V+NK M+VHPA G GTLVN +LHHC
Sbjct: 72 AEDIPLDVLYEDADIIVINKRRGMIVHPAAGVYQGTLVNALLHHC--------------- 116
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+GA +RPGIVHRLDK TSG++V AK
Sbjct: 117 -QDL-------SGINGA-LRPGIVHRLDKDTSGVMVAAK 146
>gi|291543962|emb|CBL17071.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
champanellensis 18P13]
Length = 304
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 25/165 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR- 129
+RLD W++ ++ +SR+ VQ I G V NG+ +K + ++ GD + I + PL
Sbjct: 13 MRLDKWLTEQLPELSRSGVQHLIEQGAVLCNGKPAAK-NLKLREGDGLLVQIPDPAPLED 71
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
+ +++PL+IVYED+ +LVVNKP MVVHPA G+ GTLVN +L+HC
Sbjct: 72 VQPQNLPLEIVYEDEALLVVNKPKGMVVHPAAGHPDGTLVNALLYHC------------- 118
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ S+I+G IRPGIVHR+DK TSGLL+VAK F+
Sbjct: 119 ---------QGRLSTINGV-IRPGIVHRIDKNTSGLLMVAKTDFA 153
>gi|310779318|ref|YP_003967651.1| RluA family pseudouridine synthase [Ilyobacter polytropus DSM 2926]
gi|309748641|gb|ADO83303.1| pseudouridine synthase, RluA family [Ilyobacter polytropus DSM
2926]
Length = 313
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 97/163 (59%), Gaps = 24/163 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLDA+++ D ++R+ +Q I + I G+ +K + +KG + + I E + L E
Sbjct: 20 RLDAFVNESFDYLTRSYIQKLIEQRDIIIEGKEKNKSGNKLKGNEKILVRIPEDEMLDIE 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP++ VYED +++V+NK MVVHPAPGN +GTLVN ++H
Sbjct: 80 PQDIPIEKVYEDKDLVVINKAPDMVVHPAPGNYSGTLVNALMH----------------- 122
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+I D S+I+G IRPGIVHRLDK TSGL+V+AK FS
Sbjct: 123 --NIKD----LSNINGV-IRPGIVHRLDKNTSGLIVIAKNDFS 158
>gi|409386178|ref|ZP_11238635.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
raffinolactis 4877]
gi|399206541|emb|CCK19550.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
raffinolactis 4877]
Length = 299
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ ++ LRLD IS D +SR + I++ V +NGQV K + V D+V+ I
Sbjct: 5 IKAQSAGLRLDKAISDNSD-VSRTQANDLIKADAVLVNGQV-KKAKYKVLENDIVSFDIP 62
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L EAE+I L+IVYEDD+V V+NKP MVVHP+ G+ TGTLVN +++H +
Sbjct: 63 EPEVLSYEAENIALEIVYEDDDVAVINKPQGMVVHPSAGHQTGTLVNALMYHMT------ 116
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 117 -----------------NLSSINGV-IRPGIVHRIDKDTSGLLMVAK 145
>gi|339624005|ref|ZP_08659794.1| pseudouridylate synthase, 23S RNA-specific [Fructobacillus
fructosus KCTC 3544]
Length = 306
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 96/162 (59%), Gaps = 26/162 (16%)
Query: 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
G R+DA ++S SR+ + S I+ G V +N Q V K S+ VK GD V T+ + + +
Sbjct: 12 GGKRIDAALASAGLEHSRSTLASWIKDGQVLVNDQPV-KSSYKVKSGDKVRITVPDTKSV 70
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
+ E+IPLDIVYEDD++LVVNK MVVHPA G+A GTLVN +L H L
Sbjct: 71 AIQPENIPLDIVYEDDDLLVVNKKQGMVVHPAAGHAGGTLVNALLFHAPL---------- 120
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G RPGIVHR+D+ TSGLL+VAK
Sbjct: 121 --------------SSING-EFRPGIVHRIDRDTSGLLMVAK 147
>gi|270292963|ref|ZP_06199174.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
M143]
gi|270278942|gb|EFA24788.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
M143]
Length = 299
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 100/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G RLD +S + +SR+ I++G V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGQRLDKALSD-LTELSRSLANEQIKAGQVLVNGQV-KKAKYTVQEGDIVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLDIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|224541418|ref|ZP_03681957.1| hypothetical protein CATMIT_00580 [Catenibacterium mitsuokai DSM
15897]
gi|224525664|gb|EEF94769.1| pseudouridine synthase, RluA family [Catenibacterium mitsuokai DSM
15897]
Length = 306
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LRLD I + + SR +Q I++G V +N V K ++ V+ D++ T+ + Q
Sbjct: 15 LRLDKVILNHMPDRSRTEIQKWIKAGQVIVNDNV-EKANYKVEEEDVIQVTLPDPQSTEI 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EDIPLDI+YED++V+VVNKP M+VHP+ G +GTLVN +L+HC
Sbjct: 74 RPEDIPLDIIYEDEDVIVVNKPTGMIVHPSAGIYSGTLVNALLYHCH------------- 120
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S+I+G + RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---DL-------SAINGIT-RPGIVHRIDKETSGLLMVAK 149
>gi|322391774|ref|ZP_08065239.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
peroris ATCC 700780]
gi|321145254|gb|EFX40650.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
peroris ATCC 700780]
Length = 297
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G +RLD +S + +SR+ I+SG V +NGQ+ K ++V+ GD++ +
Sbjct: 3 IKIETGGVRLDKALSD-LTELSRSLANEQIKSGQVLVNGQL-KKAKYSVQEGDVITYQVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|315303759|ref|ZP_07874262.1| ribosomal large subunit pseudouridine synthase D [Listeria ivanovii
FSL F6-596]
gi|313627868|gb|EFR96498.1| ribosomal large subunit pseudouridine synthase D [Listeria ivanovii
FSL F6-596]
Length = 302
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K + R+D ++ + G SR+ +Q +++G ++++G++ +K ++ V+ GD ++ +
Sbjct: 8 IEEKNARERIDKAVAE-LTGKSRSAIQIMLKNGDITVSGEI-AKPNYKVQVGDEIHLEVR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+ TLVN +L HC
Sbjct: 66 EPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASSTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 ---------KDL-------SGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|384045145|ref|YP_005493162.1| RNA pseudouridine synthase ylyB [Bacillus megaterium WSH-002]
gi|345442836|gb|AEN87853.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
megaterium WSH-002]
Length = 304
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 101/171 (59%), Gaps = 25/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E ++ + R+D +S+ SR++VQ I+ G +N + V K ++ K GD V
Sbjct: 4 IETVINEEQAGERIDKVLSTVNAEWSRSQVQQWIKEGHAKVNDKTV-KGNYKCKTGDAVI 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ EL+ L AE++ LDI YED +VLVVNKP MVVHPAPG+ +GTLVNG++ HC
Sbjct: 63 IEVPELEELDVVAEEMDLDIYYEDQDVLVVNKPRGMVVHPAPGHHSGTLVNGLMAHC--- 119
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 -------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|336172856|ref|YP_004579994.1| RluA family pseudouridine synthase [Lacinutrix sp. 5H-3-7-4]
gi|334727428|gb|AEH01566.1| pseudouridine synthase, RluA family [Lacinutrix sp. 5H-3-7-4]
Length = 345
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 29/168 (17%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
D LR+D W+ ++++ +R ++Q++ + G + +N Q V K ++ VK D++ + E
Sbjct: 24 DKGQAPLRIDKWLMNKVENATRNKIQAAAKEGNIYVNDQPV-KSNYKVKPLDVIKV-LFE 81
Query: 125 LQPLR--AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
P ED+PLDIVYEDD +LVVNKPA MVVHP GN +GTL+N +++H
Sbjct: 82 HPPFENLLVGEDLPLDIVYEDDTLLVVNKPAGMVVHPGHGNYSGTLINALIYH------- 134
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
F + +S RPG+VHR+DK TSGLLVVAK
Sbjct: 135 ------------------FDNLPKNSSDRPGLVHRIDKDTSGLLVVAK 164
>gi|300771291|ref|ZP_07081167.1| ribosomal large subunit pseudouridine synthase D [Sphingobacterium
spiritivorum ATCC 33861]
gi|300761961|gb|EFK58781.1| ribosomal large subunit pseudouridine synthase D [Sphingobacterium
spiritivorum ATCC 33861]
Length = 348
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 100/170 (58%), Gaps = 29/170 (17%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD LR+D ++ +R++ SR ++Q++I +G V +N V+ K S+ VK D+++ +
Sbjct: 24 VDKGQALLRIDKFLMNRVENASRNKIQNAIDAGSVLVNDSVI-KSSYKVKPFDIISVVLP 82
Query: 124 ELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPT 180
+ P E EDIPLDI++EDD V+VVNK A MVVHP N TGTLVN + HH + LPT
Sbjct: 83 D-PPRDTEVYPEDIPLDIIFEDDEVMVVNKVAGMVVHPGFNNYTGTLVNALTHHFNQLPT 141
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ G + RPG+VHR+DK TSGLLV+AK
Sbjct: 142 MP------------------------GNAGRPGLVHRIDKDTSGLLVIAK 167
>gi|445373337|ref|ZP_21426283.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5460]
gi|445388250|ref|ZP_21428000.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5461]
gi|444750805|gb|ELW75594.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5461]
gi|444750959|gb|ELW75739.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5460]
Length = 296
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKSLAD-LTELSRSQANEAIKAGTVLVNGKS-AKAKYVVKEGDVITYV 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 FPEEEVLEYKAEDIPLDIIYEDTDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|148243331|ref|YP_001228488.1| pseudouridylate synthases, 23S RNA-specific [Synechococcus sp.
RCC307]
gi|147851641|emb|CAK29135.1| Pseudouridylate synthases, 23S RNA-specific [Synechococcus sp.
RCC307]
Length = 316
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 94/161 (58%), Gaps = 26/161 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL-R 129
+RLD W+ S+ SRAR+Q I +G V +NG + ++ GD + + +PL
Sbjct: 22 MRLDRWLVSQRPEQSRARIQKFIEAGYVRVNG-TTGRAKTPLRHGDEIKLWMPPPEPLPY 80
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
+ E + LD+++ED++++V+NKPA + VHPAPGN GTLVNG+LHHC P L
Sbjct: 81 LQPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHC--PDL-------- 130
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 131 -------------PGISG-KLRPGIVHRLDKDTTGCIVIAK 157
>gi|145219868|ref|YP_001130577.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
phaeovibrioides DSM 265]
gi|145206032|gb|ABP37075.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
phaeovibrioides DSM 265]
Length = 349
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 95/162 (58%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D ++S +++ +R +VQ +I G V +N +VV K ++ +K D++ T L+P
Sbjct: 34 MRIDQYLSRQVENATRNKVQEAIEDGRVLVNDKVV-KSNYRIKSCDLIEMTF--LRPPAP 90
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+ IVYED ++V+NK MVVHPA GN TGTL N ILHH
Sbjct: 91 ELAPEDIPIAIVYEDSELMVINKEPGMVVHPAFGNWTGTLANAILHHIG----------- 139
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + S+ + +RPGIVHRLDK TSGL+++AK
Sbjct: 140 -----------ENAGSLDESELRPGIVHRLDKDTSGLIIIAK 170
>gi|378827321|ref|YP_005190053.1| ribosomal large subunit pseudouridine synthase D [Sinorhizobium
fredii HH103]
gi|365180373|emb|CCE97228.1| K06180 ribosomal large subunit pseudouridine synthase D
[Sinorhizobium fredii HH103]
Length = 390
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 98/182 (53%), Gaps = 25/182 (13%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKV 108
+P G + T D A RLDA+++ + G SR R+++ I G VSING V +
Sbjct: 51 DPFKQATGNRKVLTADENAAG-RLDAFLTEALSGEFSRNRIKALIEQGAVSINGITVLEP 109
Query: 109 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 168
V GD + + + EDIP+D++YEDD+++V+ KPA +VVHP GN TGTL
Sbjct: 110 KRKVHPGDRFEIALPAPEDPEPKGEDIPIDVLYEDDDLIVLVKPAGLVVHPGAGNWTGTL 169
Query: 169 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228
VN ++HHC + S I G RPGIVHRLDK TSG++VV
Sbjct: 170 VNALIHHCG----------------------DSLSGIGGVR-RPGIVHRLDKETSGVMVV 206
Query: 229 AK 230
AK
Sbjct: 207 AK 208
>gi|300361720|ref|ZP_07057897.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri JV-V03]
gi|300354339|gb|EFJ70210.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri JV-V03]
Length = 304
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 95/159 (59%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD I+ +I +SR +++ + + +N + KVS+ V+ GD+++ T+ +PL E
Sbjct: 15 RLDKVIAEKIKDLSRTKIKELVNDKNILVNNKA-EKVSYKVQAGDLIDITVPPAKPLSLE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A+++ LDIVYED +V+VVNKP MVVHP+ G+ TLVNG+L+H LA S E F
Sbjct: 74 AQNLNLDIVYEDADVIVVNKPQGMVVHPSAGHPDHTLVNGLLYHTH--KLADS-PEGF-- 128
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHR+DK TSGLL+VAK
Sbjct: 129 -------------------RPGIVHRIDKDTSGLLMVAK 148
>gi|260893452|ref|YP_003239549.1| RluA family pseudouridine synthase [Ammonifex degensii KC4]
gi|260865593|gb|ACX52699.1| pseudouridine synthase, RluA family [Ammonifex degensii KC4]
Length = 331
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 96/169 (56%), Gaps = 29/169 (17%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ + +RLD +++ + SR+ +Q I G V + G+ V K S+ VK G+ + +
Sbjct: 9 VEEEEAGVRLDVYLARNLPENSRSYLQRLINEGYVQVGGRKV-KPSYKVKPGEEILVFLP 67
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ L E E IPL+I+YED+++LVVNKP MVVHP G+ GTLVN +L+HC
Sbjct: 68 PAETLEVEPEPIPLEIIYEDEDLLVVNKPRGMVVHPGAGHKRGTLVNALLYHC------- 120
Query: 184 SNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
S+SG + +RPGIVHRLDK TSGLL+VAK
Sbjct: 121 -------------------RSLSGINGVLRPGIVHRLDKDTSGLLMVAK 150
>gi|399052196|ref|ZP_10741761.1| pseudouridine synthase, RluA family [Brevibacillus sp. CF112]
gi|433545647|ref|ZP_20501997.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
gi|398050062|gb|EJL42452.1| pseudouridine synthase, RluA family [Brevibacillus sp. CF112]
gi|432183045|gb|ELK40596.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
Length = 309
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 104/167 (62%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ + R+D +I+ + + SR++VQ+ I+ G V++NG+ + K ++ ++ D V +
Sbjct: 14 VEPEDANERIDKFITLQNEDWSRSQVQAWIKEGRVTVNGEPI-KSNYKLQAEDEVTLRVP 72
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + + E +PL+IVYED +V+VVNKP +VVHPAPG+ +GTLVNG+L HC
Sbjct: 73 PPKEMAIKPEPMPLEIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHC------- 125
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 126 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 155
>gi|116333479|ref|YP_795006.1| pseudouridylate synthase [Lactobacillus brevis ATCC 367]
gi|116098826|gb|ABJ63975.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
brevis ATCC 367]
Length = 307
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 94/159 (59%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SR++ + +I +G ++++G V K K G + ++ + +PL
Sbjct: 13 RLDKLVADAVATVSRSQAKLAIEAGQITVDGATV-KPKDKPKVGATIRVSLPDPEPLDLT 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPL+IVYED +VLVVNKP MVVHPAPG+ TLVN +L+H L
Sbjct: 72 PEDIPLEIVYEDADVLVVNKPQGMVVHPAPGHPNHTLVNALLYHSPL------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G ++RPGIVHR+DK TSGLL+VAK
Sbjct: 119 -----------SQING-TLRPGIVHRIDKDTSGLLMVAK 145
>gi|270308540|ref|YP_003330598.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Dehalococcoides sp. VS]
gi|270154432|gb|ACZ62270.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides sp. VS]
Length = 302
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +I+ + +SR+ +Q+ I SG V +NG+ +K S +K GD + IS P +
Sbjct: 16 RLDKYIAQKETDLSRSFIQALIDSGHVQVNGKT-AKPSLKLKNGDTITIEISPETPPELK 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPL+I+++D ++L++NKP + VHPAPG+ TL+NG+L E F D
Sbjct: 75 AEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVL-------ALEPKMEDFDD 127
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+RPGIVHRLDK TSGLL+VAK
Sbjct: 128 P-----------------LRPGIVHRLDKDTSGLLLVAK 149
>gi|410455450|ref|ZP_11309330.1| pseudouridylate synthase, 23S RNA-specific [Bacillus bataviensis
LMG 21833]
gi|409929277|gb|EKN66362.1| pseudouridylate synthase, 23S RNA-specific [Bacillus bataviensis
LMG 21833]
Length = 303
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 101/172 (58%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
++E T+ + R+D ISS D SR +VQ I+ G + +NGQ V K ++ D +
Sbjct: 3 KMEHTILEEQKGDRIDKAISSLNDEWSRTQVQQWIKDGNILVNGQSV-KTNYKCNLNDEI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
TI + + L E++ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++ HC
Sbjct: 62 KITIPDPEELDVLPENLDLEIYYEDKDVLVVNKPRGMVVHPAPGHLSGTLVNGLMAHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|417849155|ref|ZP_12495080.1| pseudouridine synthase, RluA family [Streptococcus mitis SK1080]
gi|339456782|gb|EGP69364.1| pseudouridine synthase, RluA family [Streptococcus mitis SK1080]
Length = 295
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+ G V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKLGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|421499771|ref|ZP_15946801.1| pseudouridine synthase, RluA family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|402269303|gb|EJU18641.1| pseudouridine synthase, RluA family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 318
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ ++ +R+ ++ I G V N +V++K +KG + + I E + ++ E
Sbjct: 20 RLDLFLKEQLPEATRSYLEKLITEGYVKCNEKVITKNGKRLKGKEAIQVFIPEEEEMKLE 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE +PLDIVYED+ +LV+NK A+MVVHPA GN TGTLVN +L++C +E+ SD
Sbjct: 80 AEKLPLDIVYEDEYLLVINKAANMVVHPALGNYTGTLVNALLYYC---------KESLSD 130
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++RPGIVHRLDK T+GL+VVAK
Sbjct: 131 V--------------NGTLRPGIVHRLDKDTTGLIVVAK 155
>gi|119357434|ref|YP_912078.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
phaeobacteroides DSM 266]
gi|119354783|gb|ABL65654.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
phaeobacteroides DSM 266]
Length = 350
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ +R +VQ +I G V +NG+ V K ++ +K D++ T L+P
Sbjct: 34 MRIDKYLTQQVENATRNKVQEAITEGRVLVNGKPV-KSNYKIKSCDLIQITF--LRPPAP 90
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E E+IP+DI+YED +++VVNK A MVVHPA GN TGTL N ILHH
Sbjct: 91 EMAPENIPIDIIYEDADLMVVNKEAGMVVHPAFGNWTGTLANAILHHIG----------- 139
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D E S+ RPGIVHRLDK TSGL+++AK
Sbjct: 140 -------NDTGELDCSLQ----RPGIVHRLDKDTSGLIIIAK 170
>gi|116627406|ref|YP_820025.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMD-9]
gi|116100683|gb|ABJ65829.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMD-9]
Length = 296
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG++ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKSLAD-LTELSRSQANEAIKAGTVLVNGKL-AKAKYVVKEGDVITYV 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP +VVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGIVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|15966478|ref|NP_386831.1| ribosomal large subunit pseudouridine synthase [Sinorhizobium
meliloti 1021]
gi|334317482|ref|YP_004550101.1| RluA family pseudouridine synthase [Sinorhizobium meliloti AK83]
gi|384530608|ref|YP_005714696.1| RluA family pseudouridine synthase [Sinorhizobium meliloti BL225C]
gi|407721791|ref|YP_006841453.1| RNA pseudouridine synthase YlyB [Sinorhizobium meliloti Rm41]
gi|418400213|ref|ZP_12973756.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|433614557|ref|YP_007191355.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
gi|15075749|emb|CAC47304.1| Putative ribosomal large subunit pseudouridine synthase
[Sinorhizobium meliloti 1021]
gi|333812784|gb|AEG05453.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti BL225C]
gi|334096476|gb|AEG54487.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti AK83]
gi|359505889|gb|EHK78408.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|407320023|emb|CCM68627.1| putative RNA pseudouridine synthase YlyB [Sinorhizobium meliloti
Rm41]
gi|429552747|gb|AGA07756.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
Length = 343
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 94/167 (56%), Gaps = 26/167 (15%)
Query: 65 DTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
D AG RLDA+++ + G SR R++S I G VSING V++ V GD +
Sbjct: 19 DDAAG--RLDAFLTEALAGEFSRNRIKSLIEQGAVSINGATVTEPKRKVHPGDSFRIALP 76
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + + E IPLD++YED +++V+ KPA +VVHP GN TGTLVN ++HHC
Sbjct: 77 EPEDPEPKGEAIPLDVLYEDADLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCG------ 130
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ----------------DSLSGIGGVK-RPGIVHRLDKDTSGVMVVAK 160
>gi|384537309|ref|YP_005721394.1| putative ribosomal large subunit pseudouridine synthase protein
[Sinorhizobium meliloti SM11]
gi|336034201|gb|AEH80133.1| putative ribosomal large subunit pseudouridine synthase protein
[Sinorhizobium meliloti SM11]
Length = 343
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 94/167 (56%), Gaps = 26/167 (15%)
Query: 65 DTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
D AG RLDA+++ + G SR R++S I G VSING V++ V GD +
Sbjct: 19 DDAAG--RLDAFLTEALAGEFSRNRIKSLIEQGAVSINGATVTEPKRKVHPGDSFRIALP 76
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + + E IPLD++YED +++V+ KPA +VVHP GN TGTLVN ++HHC
Sbjct: 77 EPEDPEPKGEAIPLDVLYEDADLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCG------ 130
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ----------------DSLSGIGGVK-RPGIVHRLDKDTSGVMVVAK 160
>gi|294501002|ref|YP_003564702.1| pseudouridine synthase [Bacillus megaterium QM B1551]
gi|294350939|gb|ADE71268.1| pseudouridine synthase [Bacillus megaterium QM B1551]
Length = 304
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 101/171 (59%), Gaps = 25/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E ++ + R+D +S+ SR++VQ I+ G +N + V K ++ K GD +
Sbjct: 4 IETVINEEQAGERIDKVLSTVNAEWSRSQVQQWIKEGHAKVNDKTV-KGNYKCKTGDAII 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ EL+ L AE++ LDI YED +VLVVNKP MVVHPAPG+ +GTLVNG++ HC
Sbjct: 63 IEVPELEELDVVAEEMDLDIYYEDQDVLVVNKPRGMVVHPAPGHHSGTLVNGLMAHC--- 119
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 -------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|295706351|ref|YP_003599426.1| pseudouridine synthase [Bacillus megaterium DSM 319]
gi|294804010|gb|ADF41076.1| pseudouridine synthase [Bacillus megaterium DSM 319]
Length = 304
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 101/171 (59%), Gaps = 25/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E ++ + R+D +S+ SR++VQ I+ G +N + V K ++ K GD +
Sbjct: 4 IETVINEEQAGERIDKVLSTVNAEWSRSQVQQWIKEGHAKVNDKTV-KGNYKCKTGDAII 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ EL+ L AE++ LDI YED +VLVVNKP MVVHPAPG+ +GTLVNG++ HC
Sbjct: 63 IEVPELEELDVVAEEMDLDIYYEDQDVLVVNKPRGMVVHPAPGHHSGTLVNGLMAHC--- 119
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 -------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|422416363|ref|ZP_16493320.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL J1-023]
gi|313623251|gb|EFR93499.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL J1-023]
Length = 297
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ + G SR+ +Q +++G +++NG++ +K ++ V+ GD +
Sbjct: 3 IEESHARERVDKVIAEMM-GKSRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIRYEAR 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 61 EPEELEILAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 114 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 143
>gi|414163774|ref|ZP_11420021.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410881554|gb|EKS29394.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 343
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 24/164 (14%)
Query: 68 AGK-LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
AGK RLD ++ + + +SR R+++ I +G VSI G + ++ VK + + +
Sbjct: 25 AGKSQRLDRVLADQFEDLSRTRLKALIVAGHVSIGGAPILDPAYQVKADETIIIEVPPAV 84
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
P E E+IPLDIVYEDD++LV+NKP +VVHPA G+ TGTLVN ++ HC
Sbjct: 85 PAEPEGENIPLDIVYEDDDLLVLNKPKGLVVHPAAGHETGTLVNALIAHCGA-------- 136
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK T+GL+VVAK
Sbjct: 137 ---------------SLSGIGGVRRPGIVHRLDKDTTGLMVVAK 165
>gi|302035761|ref|YP_003796083.1| 23S rRNA pseudouridine synthase [Candidatus Nitrospira defluvii]
gi|300603825|emb|CBK40157.1| 23S rRNA pseudouridine synthase [Candidatus Nitrospira defluvii]
Length = 321
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 21/159 (13%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++++R SR+ +Q I G + INGQ + + S +K GD + + +PL +
Sbjct: 21 RIDVFLANRDPTFSRSALQRLIGEGRILINGQTI-RPSQKIKPGDRIRLEVPRPEPLDLK 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E IP DI++ED +LV++KPA +VVHPAPGN +GTLVN +LHH A+S
Sbjct: 80 PEAIPFDILHEDAELLVLHKPAGLVVHPAPGNWSGTLVNALLHH-----FATSG------ 128
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S G RPG+VHRLDK TSG++V+AK
Sbjct: 129 ---------VTPSHIGGKERPGLVHRLDKETSGVMVIAK 158
>gi|253681471|ref|ZP_04862268.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
gi|253561183|gb|EES90635.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
Length = 304
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 98/161 (60%), Gaps = 29/161 (18%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD--MVNCTISELQPLR 129
RLD +IS+ ++G SR+ +Q I+ G V +NG+ K ++ +K D +VN +E Q +
Sbjct: 16 RLDVFISNSLEGKSRSYIQKLIQEGHVKVNGKD-KKSNYKLKLHDSVIVNNIENEFQ--K 72
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
E+I LDI+YED +++V+NKP MVVHPA N +GTLVNG+L+HC TL++ N +
Sbjct: 73 INPENIDLDILYEDKDIIVINKPQGMVVHPATSNYSGTLVNGLLYHCD--TLSTLNDDT- 129
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHR+DK TSG+LVVAK
Sbjct: 130 ---------------------RPGIVHRIDKDTSGVLVVAK 149
>gi|83312285|ref|YP_422549.1| pseudouridylate synthase, 23S RNA-specific [Magnetospirillum
magneticum AMB-1]
gi|82947126|dbj|BAE51990.1| Pseudouridylate synthase, 23S RNA-specific [Magnetospirillum
magneticum AMB-1]
Length = 505
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 23/168 (13%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ + RLD W++ R+ +SR R++ + G VS+ +S S VK G +
Sbjct: 192 VEPEEAGTRLDRWLALRLPELSRTRIKGLMEDGRVSLEETTISDASLRVKPGQCFVVDVP 251
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
P + E +DI L +VYED++++V++KPA MVVHPAPGN TLVN +L HC
Sbjct: 252 PDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCG------ 305
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKV 231
E + I G RPGIVHR+DK TSGLLV AK
Sbjct: 306 ----------------ESLAGIGGVK-RPGIVHRIDKDTSGLLVAAKT 336
>gi|421488498|ref|ZP_15935886.1| pseudouridine synthase, RluA family [Streptococcus oralis SK304]
gi|400367715|gb|EJP20730.1| pseudouridine synthase, RluA family [Streptococcus oralis SK304]
Length = 299
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G RLD +S + +SR+ I++G V +NGQ K + V+ GD+V +
Sbjct: 3 IKIETGGQRLDKALSD-LTELSRSLANEQIKAGQVLVNGQA-KKAKYTVQEGDIVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI+Y+D++V+VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLDIIYQDEDVVVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|352517555|ref|YP_004886872.1| pseudouridine synthase RluD [Tetragenococcus halophilus NBRC 12172]
gi|348601662|dbj|BAK94708.1| pseudouridine synthase RluD [Tetragenococcus halophilus NBRC 12172]
Length = 304
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 99/172 (57%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE T+ + G R+D +S ++ SR+++Q ++ GLV +N Q V K ++ V+ D
Sbjct: 4 KLEITITKEQG--RIDKVLSEKLPSYSRSQIQQWLKDGLVLLNNQQV-KANYKVRAEDHF 60
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L +A DIPLDIVY+D +V VVNKP MVVHP+ G+ TLVN +L H
Sbjct: 61 IINIPEEKTLDIKASDIPLDIVYQDQDVAVVNKPQGMVVHPSKGHPDHTLVNALLFHL-- 118
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 ---------------------DHLSSINGV-IRPGIVHRIDKDTSGLLMVAK 148
>gi|427427997|ref|ZP_18918039.1| Ribosomal large subunit pseudouridine synthase D [Caenispirillum
salinarum AK4]
gi|425882698|gb|EKV31377.1| Ribosomal large subunit pseudouridine synthase D [Caenispirillum
salinarum AK4]
Length = 352
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 98/178 (55%), Gaps = 27/178 (15%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRID--GISRARVQSSIRSGLVSINGQVVSKV--SHNV 112
G L +A LRLD W++ + G++R+R++ I G VS++G+ ++ S V
Sbjct: 29 GALLTAEAGPEAAGLRLDKWLAEALGDPGLTRSRLKQLIDEGRVSLDGRTLTAADASRKV 88
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
+ G T+ +P E +DIPL +V+ED +++VV+KPA MVVHPA GNA GTLVN +
Sbjct: 89 RAGQTAAVTVPPPEPAVPEPQDIPLSVVFEDAHLIVVDKPAGMVVHPAAGNADGTLVNAL 148
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LHHC S S G RPGIVHR+DK TSGLLV AK
Sbjct: 149 LHHCG-----------------------ASLSGIGGVRRPGIVHRIDKDTSGLLVAAK 183
>gi|326800939|ref|YP_004318758.1| pseudouridine synthase [Sphingobacterium sp. 21]
gi|326551703|gb|ADZ80088.1| pseudouridine synthase, RluA family [Sphingobacterium sp. 21]
Length = 348
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 100/179 (55%), Gaps = 37/179 (20%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
L VD LR+D ++ R++ SR RVQ++I + V +N + V K S+ VK GD++
Sbjct: 21 HLRIVVDKGQTLLRIDKFLMHRVENASRNRVQNAIEAENVLVNNRPV-KSSYKVKPGDLI 79
Query: 119 NCTI------SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
+ +E+ P E+IPLDI YEDD++L+VNKPA MVVHP N TGTLVN +
Sbjct: 80 TVVLPHPPRDTEIYP-----ENIPLDIRYEDDDLLIVNKPAGMVVHPGYNNYTGTLVNAL 134
Query: 173 LHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++H + LP L G RPG+VHR+DK TSGLLV+AK
Sbjct: 135 VYHFNQLPQLP------------------------GNDGRPGLVHRIDKDTSGLLVIAK 169
>gi|344203445|ref|YP_004788588.1| RluA family pseudouridine synthase [Muricauda ruestringensis DSM
13258]
gi|343955367|gb|AEM71166.1| pseudouridine synthase, RluA family [Muricauda ruestringensis DSM
13258]
Length = 343
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 94/162 (58%), Gaps = 29/162 (17%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR- 129
LR+D ++ + I+ +R ++Q + + G + +NG +V K ++ VK GD V E P
Sbjct: 30 LRVDKFLMNFIENATRNKIQQAAKKGHIWVNGTIV-KQNYKVKAGDEVKVMF-EHPPYEF 87
Query: 130 -AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
EDIPLDIVYEDD +LVVNKPA MVVHP GN +GTL+N +++H
Sbjct: 88 LLTPEDIPLDIVYEDDVLLVVNKPAGMVVHPGHGNYSGTLINALVYH------------- 134
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
F + + +S RPG+VHR+DK TSGLLV+AK
Sbjct: 135 ------------FENLPNNSSDRPGLVHRIDKDTSGLLVIAK 164
>gi|227540505|ref|ZP_03970554.1| pseudouridylate synthase [Sphingobacterium spiritivorum ATCC 33300]
gi|227239587|gb|EEI89602.1| pseudouridylate synthase [Sphingobacterium spiritivorum ATCC 33300]
Length = 348
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 100/170 (58%), Gaps = 29/170 (17%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD LR+D ++ +R++ SR ++Q++I +G V +N V+ K S+ VK D+++ +
Sbjct: 24 VDKGQALLRIDKFLMNRVENASRNKIQNAIDAGSVLVNDSVI-KSSYKVKPFDIISVVLP 82
Query: 124 ELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPT 180
+ P E EDIPLDI++EDD V+VVNK A MVVHP N TGTLVN + HH + LPT
Sbjct: 83 D-PPRDTEVYPEDIPLDIMFEDDEVMVVNKVAGMVVHPGFNNYTGTLVNALTHHFNQLPT 141
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ G + RPG+VHR+DK TSGLLV+AK
Sbjct: 142 M------------------------PGNAGRPGLVHRIDKDTSGLLVIAK 167
>gi|322376434|ref|ZP_08050927.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
M334]
gi|321282241|gb|EFX59248.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
M334]
Length = 296
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSDLTE-LSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE++PL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAENLPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|409402118|ref|ZP_11251731.1| ribosomal large subunit pseudouridine synthase D [Acidocella sp.
MX-AZ02]
gi|409129251|gb|EKM99112.1| ribosomal large subunit pseudouridine synthase D [Acidocella sp.
MX-AZ02]
Length = 324
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD+++++RI ISR+RV++ I G +G V + S V+ G + + P +
Sbjct: 19 RLDSYLAARIGTISRSRVKALILEGACRRDGIVTTDASETVQPGTLYQLALPAAAPALPQ 78
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E +PLDI+YEDD +L+++K A MVVHPAPGN GTLVN ++ HC
Sbjct: 79 PESLPLDILYEDDALLILDKAAGMVVHPAPGNPDGTLVNALIAHCG-------------- 124
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + I G RPGIVHRLDK TSGL+VVAK
Sbjct: 125 --------ESLTGIGGER-RPGIVHRLDKDTSGLMVVAK 154
>gi|408675561|ref|YP_006875309.1| pseudouridine synthase, RluA family [Emticicia oligotrophica DSM
17448]
gi|387857185|gb|AFK05282.1| pseudouridine synthase, RluA family [Emticicia oligotrophica DSM
17448]
Length = 343
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 31/175 (17%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD +RLD ++ +SR ++Q+SI + + +NG + +K S+ VK D++ T S
Sbjct: 25 VDKGQITMRLDKYLPHFTKNVSRNKIQNSIDAEAIKVNG-LPAKASYKVKPLDVI--TFS 81
Query: 124 ELQPLRAEA---EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLP 179
+P R E+IPLDIVYEDD++++VNKP MVVHPA GN +GTLVNG++++ +LP
Sbjct: 82 LPRPPRNHELLEENIPLDIVYEDDDLMIVNKPPRMVVHPAVGNWSGTLVNGLVYYLKNLP 141
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
T + IRPG+VHR+DK TSGLLV+AK F+
Sbjct: 142 THRN------------------------GEIRPGLVHRIDKDTSGLLVIAKNDFA 172
>gi|377809731|ref|YP_005004952.1| RluA family pseudouridine synthase [Pediococcus claussenii ATCC
BAA-344]
gi|361056472|gb|AEV95276.1| pseudouridine synthase, RluA family protein [Pediococcus claussenii
ATCC BAA-344]
Length = 301
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 28/160 (17%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQ-VVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D I+ ++R+R+Q+ I+ G V +NG+ V++ +V GD V I + +P
Sbjct: 15 RIDKTITKNFSELTRSRIQNLIKHGNVLVNGESTVNRYKLSV--GDYVQILIPDPEPTEV 72
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E + LDI+YEDD+V+V+NKP MVVHPAPG+ GTLVNG+L H L T+
Sbjct: 73 IPEKMNLDIIYEDDDVIVINKPQGMVVHPAPGHKNGTLVNGLLAHTPLATI--------- 123
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
RPGIVHR+DK TSGLL+VAK
Sbjct: 124 ----------------NGEFRPGIVHRIDKDTSGLLMVAK 147
>gi|375006258|ref|YP_004975042.1| pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357427516|emb|CBS90459.1| pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 353
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 23/171 (13%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
L TV +A RLD +++ + +SR+RVQ+ + G V +G+ ++ S VK G
Sbjct: 32 LAYTVPDEAAGQRLDKALAAGLPDLSRSRVQALLEQGCVRGDGRTITDPSLRVKPGQTFE 91
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ + A+DIP+D+V+ED +VLV++KPA +VVHPA GN GTLVN +L HC
Sbjct: 92 VEVPGAEAAEPVAQDIPIDVVFEDADVLVIDKPAGLVVHPAAGNPDGTLVNALLAHCG-- 149
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSGL+VVAK
Sbjct: 150 --------------------DSLSGIGGVK-RPGIVHRLDKDTSGLMVVAK 179
>gi|260775124|ref|ZP_05884022.1| ribosomal large subunit pseudouridine synthase D [Vibrio
coralliilyticus ATCC BAA-450]
gi|260608825|gb|EEX34987.1| ribosomal large subunit pseudouridine synthase D [Vibrio
coralliilyticus ATCC BAA-450]
Length = 325
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 29/176 (16%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L TV D++ G+ RLD I+ SR+R++ + G V +NG+V++K V GG+
Sbjct: 5 IELTHTVKDSQLGQ-RLDQAIAELFADFSRSRLKEWLVDGKVQVNGEVITKPRTKVMGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++ R EA+DIPLDIVYEDD+++V+NKP VVHP G GT++N +LHH
Sbjct: 64 IITLQAELEDEERWEAQDIPLDIVYEDDDIMVINKPRDFVVHPGAGTPDGTVLNALLHH- 122
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
+ D ++ R GIVHRLDK T+GL+VVAK +
Sbjct: 123 ------------YPDIAEVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|55822493|ref|YP_140934.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus CNRZ1066]
gi|55738478|gb|AAV62119.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus CNRZ1066]
Length = 292
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKSLAD-LTELSRSQANEAIKAGTVLVNGKS-AKAKYVVKEGDVITYV 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|322387558|ref|ZP_08061167.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis ATCC 700779]
gi|419843101|ref|ZP_14366425.1| pseudouridine synthase, RluA family [Streptococcus infantis ATCC
700779]
gi|321141425|gb|EFX36921.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis ATCC 700779]
gi|385703203|gb|EIG40329.1| pseudouridine synthase, RluA family [Streptococcus infantis ATCC
700779]
Length = 297
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G +RLD +S + +SR+ I+SG V +NG V K + V+ GD++ I
Sbjct: 3 IKIETGGIRLDKALSD-LTELSRSLANEQIKSGQVLVNGHV-KKAKYTVQEGDVITYQIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|406587502|ref|ZP_11062382.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD1S]
gi|419813600|ref|ZP_14338413.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD2S]
gi|419816963|ref|ZP_14341134.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD4S]
gi|404466504|gb|EKA11836.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD4S]
gi|404472711|gb|EKA17126.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD2S]
gi|404473015|gb|EKA17386.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD1S]
Length = 299
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 100/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G RLD +S + +SR+ I++G V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGQRLDKALSD-LTELSRSLANEQIKAGQVLVNGQV-KKAKYTVQEGDIVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|406661144|ref|ZP_11069268.1| Ribosomal large subunit pseudouridine synthase D [Cecembia
lonarensis LW9]
gi|405555086|gb|EKB50136.1| Ribosomal large subunit pseudouridine synthase D [Cecembia
lonarensis LW9]
Length = 347
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 29/170 (17%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD R+D +++ ++ +R +VQ +I +G V +NG+ +K ++ +K D + +
Sbjct: 26 VDKGQTLTRIDKFLTDKVANATRNKVQQAIDAGNVLVNGKP-TKSNYKIKPLDEIKVLL- 83
Query: 124 ELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPT 180
E P E AE IPLDIVYEDD +LVVNKPA MVVHPA GN TGTLVNG++++ + LPT
Sbjct: 84 EKPPRDTEVVAEPIPLDIVYEDDQLLVVNKPAGMVVHPAHGNWTGTLVNGLVYYFNQLPT 143
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ G + RPG+VHR+DK TSGLLV+AK
Sbjct: 144 M------------------------PGNTGRPGLVHRIDKDTSGLLVIAK 169
>gi|323691964|ref|ZP_08106213.1| pseudouridine synthase [Clostridium symbiosum WAL-14673]
gi|355628019|ref|ZP_09049548.1| hypothetical protein HMPREF1020_03627 [Clostridium sp. 7_3_54FAA]
gi|323503973|gb|EGB19786.1| pseudouridine synthase [Clostridium symbiosum WAL-14673]
gi|354819987|gb|EHF04418.1| hypothetical protein HMPREF1020_03627 [Clostridium sp. 7_3_54FAA]
Length = 305
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 24/173 (13%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
++ E V K+ LR+D +++ +R+ +Q ++S LV +NG+ V K S+ GD
Sbjct: 1 MKQEYIVPEKSSGLRIDKFLTEICPDYTRSFLQKLLKSELVEVNGKPV-KSSYKTAAGDT 59
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + E A+++PLDI+YED++V+++NKP MVVHPA G+ GTLVNG++HHC
Sbjct: 60 VTFEVPEAVEAEITAQEMPLDILYEDEDVILINKPKGMVVHPAAGHYEGTLVNGLMHHC- 118
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I+G +RPGIVHR+D T+G+L+V K
Sbjct: 119 ---------------------REQLSGINGV-MRPGIVHRIDMDTTGVLIVCK 149
>gi|419841491|ref|ZP_14364860.1| pseudouridine synthase, RluA family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|386905017|gb|EIJ69798.1| pseudouridine synthase, RluA family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
Length = 318
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 24/166 (14%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
+T GK RLD ++ ++ +R+ ++ I G V + +V++K +KG + + I E
Sbjct: 14 ETDQGK-RLDLFLKEQLPEATRSYLEKLIAEGYVKCDEKVITKNGKKLKGKEAIQVFIPE 72
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
+ ++ EAE +PLDIVYED+ +LV+NK A+MVVHPA GN TGTLVN +L++C
Sbjct: 73 EEEMKVEAEKLPLDIVYEDEYLLVINKAANMVVHPALGNYTGTLVNALLYYC-------- 124
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+E+ SD ++RPGIVHRLDK T+GL+VVAK
Sbjct: 125 -KESLSDV--------------NGTLRPGIVHRLDKDTTGLIVVAK 155
>gi|291533845|emb|CBL06958.1| ribosomal large subunit pseudouridine synthase D [Megamonas
hypermegale ART12/1]
Length = 304
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 24/163 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + D SRA +Q I G +++N QV + ++ +K D + + +
Sbjct: 14 RLDVFLAGQEDNPSRASIQKMITDGAITVNNQV-KRANYKLKANDQITMVFEPPTEIEVK 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YED++++V+NK MVVHPA G +GTLVN +L+HC
Sbjct: 73 PENIPLDILYEDNDIIVINKARGMVVHPAAGVYSGTLVNALLYHCH-------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
DE S I+G IRPGIVHRLDK TSG++VVAK F+
Sbjct: 119 ------DE--LSGING-KIRPGIVHRLDKDTSGVMVVAKNDFA 152
>gi|255036339|ref|YP_003086960.1| RluA family pseudouridine synthase [Dyadobacter fermentans DSM
18053]
gi|254949095|gb|ACT93795.1| pseudouridine synthase, RluA family [Dyadobacter fermentans DSM
18053]
Length = 343
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 100/168 (59%), Gaps = 31/168 (18%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD +++ + SR ++Q+ I + V +NGQ +K S+ VK D+V T+S QP R
Sbjct: 30 MRLDKYLNLHVANASRTKIQNGIEAEAVRVNGQP-TKASYKVKPFDVV--TLSLPQPPRD 86
Query: 131 EA---EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQ 186
E++PLDI+YEDD +L+VNK A MVVHPA GN TGTL+NG+++H LPT N
Sbjct: 87 TEIIPENLPLDIIYEDDVLLIVNKAAGMVVHPAFGNWTGTLINGLVYHFQQLPT--GRNG 144
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
E RPG+VHR+DK TSGLLV+AK F+
Sbjct: 145 EG----------------------RPGLVHRIDKDTSGLLVIAKTEFA 170
>gi|420155633|ref|ZP_14662491.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
gi|394758862|gb|EJF41698.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
Length = 308
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 97/164 (59%), Gaps = 25/164 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL-RA 130
R D +S ++G +R+ VQ + +G V G+ +SK + V G + + + P+ +A
Sbjct: 16 RADLAVSELLEGQTRSGVQKLMLAGAVLCGGRPLSK-NDRVAEGQTIEVLLPDPAPMEQA 74
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ E+IPLDIVYEDD++LVVNKP MVVHPAPGN TLVN +L+HC
Sbjct: 75 KPENIPLDIVYEDDDLLVVNKPKGMVVHPAPGNRDKTLVNALLYHCG------------- 121
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ S I+G IRPGIVHR+DK TSGLL+VAK F+
Sbjct: 122 ---------DSLSGINGV-IRPGIVHRIDKDTSGLLIVAKNDFA 155
>gi|329766891|ref|ZP_08258419.1| hypothetical protein HMPREF0428_00116 [Gemella haemolysans M341]
gi|328837616|gb|EGF87241.1| hypothetical protein HMPREF0428_00116 [Gemella haemolysans M341]
Length = 299
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++ + +SR +Q+ I G + ++G + K ++ +K G+++ E + L
Sbjct: 15 RIDKFLQQELTDVSRTNIQNLISEGYIKVDGNNI-KTNYKLKDGNVITIEYKEPEELDVV 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIP+DIVYEDD++++VNK MVVHP+ G+ GTLVN +L H L
Sbjct: 74 KQDIPIDIVYEDDDLIIVNKAKGMVVHPSVGHKDGTLVNALLFHSEL------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +IRPGIVHR+DK TSGLL+VAK
Sbjct: 121 -----------SSING-TIRPGIVHRIDKDTSGLLIVAK 147
>gi|223984556|ref|ZP_03634687.1| hypothetical protein HOLDEFILI_01982 [Holdemania filiformis DSM
12042]
gi|223963484|gb|EEF67865.1| hypothetical protein HOLDEFILI_01982 [Holdemania filiformis DSM
12042]
Length = 307
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 97/167 (58%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V+ + +RLD ++S+ +D SR+R Q I V I+ V K S+ VK GD + T+
Sbjct: 8 VEEQDQGVRLDKYLSTAMDDCSRSRAQQLIDEEAVRIDDLPV-KNSYKVKAGDEIEVTLP 66
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L A+ +++ L++VYED +V+V+NKP +VVHP PGN TLVNG+L HC
Sbjct: 67 EEEALEAQPQEMALNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLLWHC------- 119
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGL+V K
Sbjct: 120 ---------HDL-------SGINGV-LRPGIVHRIDKDTSGLIVACK 149
>gi|408401446|ref|YP_006859409.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|407967674|dbj|BAM60912.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis RE378]
Length = 297
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SR + I+ GLV +NGQ K + V+ GD++ + + + L +
Sbjct: 11 RLDKALAD-LSPLSRGQANDQIKQGLVLVNGQQ-KKAKYTVQAGDVIQFELPKEEVLEYQ 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A+DIPL+I+YED+ + ++NKP MVVHP+ G+ +GT+VN +++H
Sbjct: 69 AQDIPLNIIYEDEALAIINKPQGMVVHPSAGHPSGTMVNALMYHI--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DKGTSGLL+VAK
Sbjct: 114 -KDL-------SSINGV-VRPGIVHRIDKGTSGLLMVAK 143
>gi|27363948|ref|NP_759476.1| 23S rRNA pseudouridine synthase D [Vibrio vulnificus CMCP6]
gi|320157325|ref|YP_004189704.1| ribosomal large subunit pseudouridine synthase D [Vibrio vulnificus
MO6-24/O]
gi|34395776|sp|Q8DEV0.1|RLUD_VIBVU RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|27360065|gb|AAO09003.1| Ribosomal large subunit pseudouridine synthase D [Vibrio vulnificus
CMCP6]
gi|319932637|gb|ADV87501.1| ribosomal large subunit pseudouridine synthase D [Vibrio vulnificus
MO6-24/O]
Length = 325
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 31/177 (17%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L TV D++ G+ RLD I+ SR+R++ + G V+++G VV+K V GG+
Sbjct: 5 IELTNTVKDSQLGQ-RLDQAIAELFADFSRSRLKEWLLDGKVTVDGNVVTKPRTKVMGGE 63
Query: 117 MVNCTISELQ-PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
++ ++EL+ +R EA+DIPLDIVYEDD++LV+NKP VVHP G GT++N +L H
Sbjct: 64 VITV-LAELEDEVRWEAQDIPLDIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLFH 122
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
C P +A R GIVHRLDK T+GL+VVAK +
Sbjct: 123 C--PEVAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|339498527|ref|ZP_08659503.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 312
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 92/159 (57%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+DA ++ SR + + G V +NG V + S+ V GD+V T E++
Sbjct: 15 RIDAVLAKETLPYSRTTLSDWLLEGNVLVNGTQVKR-SYKVSSGDVVTITPPEIKDTEIL 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYEDD++LVVNKP MVVHPA G+ TGTLVN +++H L
Sbjct: 74 AENIPLDIVYEDDDLLVVNKPQGMVVHPAAGHTTGTLVNALMYHSPL------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G RPGIVHR+D+ TSGLL+VAK
Sbjct: 121 -----------STING-EFRPGIVHRIDRDTSGLLMVAK 147
>gi|393773244|ref|ZP_10361642.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. Rr 2-17]
gi|392721124|gb|EIZ78591.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. Rr 2-17]
Length = 314
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ G+SR RV++ + G VS+ G+ S+ S + G T+ E P AE
Sbjct: 18 RLDKALAD-ASGLSRERVKALLGEGRVSVAGKPASQASLKLAPGTPFAITVPEAVPATAE 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A+DIPL +V+ED+ ++VV+KPA +VVHPA GN GTLVN +LHHC
Sbjct: 77 AQDIPLSVVFEDEFLIVVDKPAGLVVHPAAGNLDGTLVNALLHHC--------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I G + RPGIVHR+DK TSGLLVVAK
Sbjct: 122 -------HGQLSGIGGVA-RPGIVHRIDKDTSGLLVVAK 152
>gi|167771408|ref|ZP_02443461.1| hypothetical protein ANACOL_02774 [Anaerotruncus colihominis DSM
17241]
gi|167666048|gb|EDS10178.1| pseudouridine synthase, RluA family [Anaerotruncus colihominis DSM
17241]
Length = 306
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 100/173 (57%), Gaps = 25/173 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+L T + +R D W++S +G+ +R+ +Q V + + VSK + ++GG+
Sbjct: 3 RLYYTSEESDAGVRADRWLASAAEGLLTRSAIQKLCDCKAVRVGEKPVSK-NDRLRGGET 61
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ + QPL +DIP++IVYED ++LVVNKP MVVHPAPG+ GTLVN +L+HC
Sbjct: 62 FIIDVPDAQPLDIVPQDIPIEIVYEDGDLLVVNKPKGMVVHPAPGHPNGTLVNALLYHC- 120
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------------QGRLSSINGV-IRPGIVHRIDKDTSGLLIVAK 151
>gi|379705487|ref|YP_005203946.1| ribosomal large subunit pseudouridine synthase [Streptococcus
infantarius subsp. infantarius CJ18]
gi|374682186|gb|AEZ62475.1| ribosomal large subunit pseudouridine synthase [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 298
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ D +SR++ I+ G V +NG+ V K + VK GD+V + E L +
Sbjct: 11 RLDKALADLTD-LSRSQANDEIKKGTVLVNGKAV-KAKYAVKVGDVVTYEVPEEGVLEYK 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPLDIVYED++V VV KP MVVHP+ G+ +GTLVN +++H
Sbjct: 69 AENIPLDIVYEDEDVAVVYKPQGMVVHPSVGHTSGTLVNALMYHI--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 114 -KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAK 143
>gi|323141904|ref|ZP_08076765.1| pseudouridine synthase, RluA family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413651|gb|EFY04509.1| pseudouridine synthase, RluA family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 314
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 26/181 (14%)
Query: 50 EPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVS 109
E I N A Q + + R D +++ ++ ++R+ +Q + G ++ G V K +
Sbjct: 2 EHIENGAAEQQRLIITEQEAGQRADVGLAAMLE-LTRSNMQKLLEEGR-AVRGSKVLKSN 59
Query: 110 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 169
+ ++ GD ++ T+ E QPL + E+IPLDI+YED++V+VVNK MVVHPA GN GTLV
Sbjct: 60 YKLRLGDEIDVTLPEPQPLDVQPENIPLDIIYEDEDVVVVNKARGMVVHPAAGNLNGTLV 119
Query: 170 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 229
N +L+HC + S I+G IRPGIVHRLDK TSG+++ A
Sbjct: 120 NALLYHC-----------------------KNLSGINGV-IRPGIVHRLDKDTSGIMICA 155
Query: 230 K 230
K
Sbjct: 156 K 156
>gi|37678897|ref|NP_933506.1| 23S rRNA pseudouridine synthase D [Vibrio vulnificus YJ016]
gi|37197638|dbj|BAC93477.1| pseudouridylate synthase, 23S RNA-specific [Vibrio vulnificus
YJ016]
Length = 325
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 31/177 (17%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L TV D++ G+ RLD I+ SR+R++ + G V+++G VV+K V GG+
Sbjct: 5 IELTNTVKDSQLGQ-RLDQAIAELFADFSRSRLKEWLLDGKVTVDGNVVTKPRTKVMGGE 63
Query: 117 MVNCTISELQ-PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
++ ++EL+ +R EA+DIPLDIVYEDD++LV+NKP VVHP G GT++N +L H
Sbjct: 64 VITV-LAELEDEVRWEAQDIPLDIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLFH 122
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
C P +A R GIVHRLDK T+GL+VVAK +
Sbjct: 123 C--PEVAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|124024488|ref|YP_001018795.1| pseudouridylate synthase [Prochlorococcus marinus str. MIT 9303]
gi|123964774|gb|ABM79530.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. MIT 9303]
Length = 324
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 96/166 (57%), Gaps = 28/166 (16%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD W+ S+ SR+ +Q I +GLV +NG + + ++ GD V + +
Sbjct: 24 KPLPMRLDRWLVSQRSEQSRSHIQKFIEAGLVRVNG-ITGRAKTPLRQGDEVQLWMPPPE 82
Query: 127 PL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASS 184
PL + E + LD+++ED +++V+NKPA + VHPAPGN GTLVNG+LHHCS LP
Sbjct: 83 PLPYLQPEAMHLDVLFEDRHLIVINKPAGLTVHPAPGNRNGTLVNGLLHHCSDLP----- 137
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
ISG +RPGIVHRLDK T+G +V+AK
Sbjct: 138 -------------------GISG-KLRPGIVHRLDKDTTGCIVIAK 163
>gi|402821994|ref|ZP_10871503.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
LH128]
gi|402264475|gb|EJU14329.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
LH128]
Length = 313
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D ++ + G+SR R+++ + G VS+ G+ V++ S V G + E P A
Sbjct: 17 RIDKALAE-VSGLSRERIKALMGEGRVSLAGKPVAQASLKVDAGTPFAIDVPEATPAEAV 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A+DIPL +VYED+++++V+KPA +VVHPA GN GTLVN +LHHC
Sbjct: 76 AQDIPLAVVYEDEHLIIVDKPAGLVVHPAAGNLDGTLVNALLHHC--------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I G + RPGIVHR+DK TSGLLVVAK
Sbjct: 121 -------RGQLSGIGGVA-RPGIVHRIDKDTSGLLVVAK 151
>gi|222152892|ref|YP_002562069.1| RNA pseudouridylate synthase [Streptococcus uberis 0140J]
gi|222113705|emb|CAR41656.1| putative RNA pseudouridylate synthase [Streptococcus uberis 0140J]
Length = 296
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 101/164 (61%), Gaps = 26/164 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K G RLD ++ D +SR++ I+ G V +NG+ V K + VK GD+++ + E +
Sbjct: 6 KTGGARLDKALADLTD-LSRSQANDEIKKGTVLVNGEPV-KAKYTVKEGDIISYQLPEEE 63
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
L EAEDIP++IVYED+ + ++NK MVVHP+ G+++GTLVN +L+H
Sbjct: 64 ILDYEAEDIPIEIVYEDEYLAIINKAQGMVVHPSAGHSSGTLVNALLYHI---------- 113
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ------KDL-------STINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|218245618|ref|YP_002370989.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 8801]
gi|218166096|gb|ACK64833.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 8801]
Length = 318
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 99/176 (56%), Gaps = 26/176 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q+E TV K R+D W+S +D ISR+ +Q I G + +N QV V GD +
Sbjct: 10 QIELTVQDKGD--RIDLWLSQNLDQISRSHLQKLIEQGNIYLNNQVCLNKKTKVNLGDRL 67
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ +PL + E IPLDI+YEDD+++++NK A +VVHPAPG+ +GTLV+G+L+HC
Sbjct: 68 QVFLPPPEPLELQPEPIPLDILYEDDSLIIINKSAGLVVHPAPGHTSGTLVHGLLYHC-- 125
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
P L G RPGIVHRLDK T+G +VVAK ++
Sbjct: 126 PNLVG----------------------IGGVQRPGIVHRLDKDTTGAIVVAKTDYA 159
>gi|427418636|ref|ZP_18908819.1| ribosomal large subunit pseudouridine synthase D [Leptolyngbya sp.
PCC 7375]
gi|425761349|gb|EKV02202.1| ribosomal large subunit pseudouridine synthase D [Leptolyngbya sp.
PCC 7375]
Length = 318
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 89/175 (50%), Gaps = 26/175 (14%)
Query: 66 TKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL 125
T A R+D W+S D +SR R+Q I G + IN Q V GD + I E+
Sbjct: 16 TDAANERIDRWLSQNCD-LSRNRIQKLIEQGALRINDQPCINKKVIVSSGDWLQLNIPEV 74
Query: 126 QPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
+ E IPLDI+YED +LVVNKP MVVHPAPG+ GTLVN +L HC
Sbjct: 75 EAFELTPEAIPLDILYEDQYLLVVNKPPGMVVHPAPGHPKGTLVNAVLAHCG-------- 126
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFGNHF 240
+ + + G RPGIVHRLDK T+G +VVAK P +H
Sbjct: 127 --------------DQLTGVGGVQ-RPGIVHRLDKDTTGAMVVAKT--EPVLHHL 164
>gi|419767492|ref|ZP_14293645.1| pseudouridine synthase, RluA family [Streptococcus mitis SK579]
gi|383353035|gb|EID30662.1| pseudouridine synthase, RluA family [Streptococcus mitis SK579]
Length = 296
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSDLTE-LSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE++PL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAENLPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|212639635|ref|YP_002316155.1| Pseudouridylate synthase, 23S RNA-specific [Anoxybacillus
flavithermus WK1]
gi|212561115|gb|ACJ34170.1| Pseudouridylate synthase, 23S RNA-specific [Anoxybacillus
flavithermus WK1]
Length = 303
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 100/172 (58%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T++ + R+D I+ + SR++VQ ++ G V +NG+ V K ++ D V
Sbjct: 3 QIQLTIEEQHDGERIDKVIAELNEQWSRSQVQQWLKEGHVLVNGKAV-KPNYKCHVDDEV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+I +PL E IPLDI YED +VLVVNKP MVVHPAPG+ GTLVN +L HC
Sbjct: 62 VISIPSPEPLDVAPEPIPLDIYYEDADVLVVNKPRGMVVHPAPGHMHGTLVNALLAHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------QDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|308069860|ref|YP_003871465.1| RNA pseudouridine synthase (RNA-uridine isomerase) [Paenibacillus
polymyxa E681]
gi|305859139|gb|ADM70927.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Paenibacillus polymyxa E681]
Length = 334
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 25/168 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T ++ K+R+D +I+ + +SR+++Q I +G V +NG + K ++ + GD + ++
Sbjct: 38 TANSVDAKIRIDKYIAEEMKEVSRSQIQMWIGNGRVLVNGTAI-KANYKLAEGDRIVLSV 96
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E + + E+IPLD+VYED +V+V+NK +VVHPAPG+++GTLVN +++HC
Sbjct: 97 PEPESVDIVPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHSSGTLVNALMYHC------ 150
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+ AK
Sbjct: 151 ----------HDL-------SGING-ELRPGIVHRIDKDTSGLLMAAK 180
>gi|218281133|ref|ZP_03487668.1| hypothetical protein EUBIFOR_00229 [Eubacterium biforme DSM 3989]
gi|218217647|gb|EEC91185.1| hypothetical protein EUBIFOR_00229 [Eubacterium biforme DSM 3989]
Length = 304
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 98/166 (59%), Gaps = 28/166 (16%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
DTK RLD ++ ++D SR R++ + G V +N Q V K S+ V D + +I E
Sbjct: 11 DTKLD--RLDKVLAEKLD-FSRKRIKDLLDEGNVLVN-QKVMKASYKVCVNDEIEVSIPE 66
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
L + E I LDIVYED +++V+NKP MVVHPAPG+ +GTLVN +L+HC
Sbjct: 67 LDSTQVLPEPIDLDIVYEDHDIIVINKPKGMVVHPAPGHYSGTLVNALLYHC-------- 118
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLLVVAK
Sbjct: 119 --------KDL-------SGINGV-MRPGIVHRIDKDTSGLLVVAK 148
>gi|255261883|ref|ZP_05341225.1| ribosomal large subunit pseudouridine synthase D [Thalassiobium sp.
R2A62]
gi|255104218|gb|EET46892.1| ribosomal large subunit pseudouridine synthase D [Thalassiobium sp.
R2A62]
Length = 341
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 92/162 (56%), Gaps = 26/162 (16%)
Query: 72 RLDAWISSRIDG---ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD I+ + +SR+R+ + SG V++NG V++ V D + T+ +
Sbjct: 17 RLDKAIARDVPADASLSRSRIAKLLASGDVALNGAVLTDPRAKVAEDDEITVTLPDAAES 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
EDIPLD+V+EDD+++V+NKP+ MVVHPAPG+ +GTLVN ++HHC
Sbjct: 77 HMGPEDIPLDLVFEDDDLIVINKPSGMVVHPAPGSPSGTLVNALMHHCG----------- 125
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHR+DK TSGLLVVAK
Sbjct: 126 ------------DSLSGVGGEKRPGIVHRIDKETSGLLVVAK 155
>gi|307709119|ref|ZP_07645578.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK564]
gi|307620065|gb|EFN99182.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK564]
Length = 295
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 100/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +N QV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNDQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|206603460|gb|EDZ39940.1| pseudouridylate synthase, 23S RNA-specific [Leptospirillum sp.
Group II '5-way CG']
Length = 340
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 13/159 (8%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S G +R+RVQ + LV+IN + SH ++GGD + I + A+
Sbjct: 31 RLDIYLSRNCLGFTRSRVQRLLEEKLVTIN-DIYPASSHKIRGGDRIRVLIPPPRSQAAQ 89
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDI L+I+YEDD+++V++KP +VVHPAPG+A+GTLVNG+L H S
Sbjct: 90 PEDIHLEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGLLFHFQ------------SQ 137
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ E + +R G+VHRLD+ TSG++VV K
Sbjct: 138 GDEQKKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVGK 176
>gi|427412643|ref|ZP_18902835.1| RluA family pseudouridine synthase [Veillonella ratti
ACS-216-V-Col6b]
gi|425716450|gb|EKU79434.1| RluA family pseudouridine synthase [Veillonella ratti
ACS-216-V-Col6b]
Length = 328
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 27/166 (16%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
D K G+ RLD +++S ++G SR+ VQ I+SG V++N Q K + + G + + +
Sbjct: 33 DDKEGE-RLDVYLTSIMEG-SRSYVQQLIKSGAVTVN-QKTGKSNLKLTVGSTIMVVVPK 89
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
Q + + EDIPLDI++ED +++++NKP MVVHPA GN TGTLVN +L HC
Sbjct: 90 PQAVEVKPEDIPLDILFEDHDIIIINKPRGMVVHPAVGNYTGTLVNALLFHC-------- 141
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G IRPGIVHRLDK TSG+++ AK
Sbjct: 142 --------RDL-------SGING-EIRPGIVHRLDKDTSGVMMAAK 171
>gi|239618296|ref|YP_002941618.1| pseudouridine synthase, RluA family [Kosmotoga olearia TBF 19.5.1]
gi|239507127|gb|ACR80614.1| pseudouridine synthase, RluA family [Kosmotoga olearia TBF 19.5.1]
Length = 311
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 27/172 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E+ V + RLD ++S + +SR +Q I+ G V +NG+ K S+ VK GD+V
Sbjct: 4 EQIVTNREDGWRLDKFLSEKAPQWVSRTAIQRHIKDGGVLVNGEK-KKASYRVKSGDIVT 62
Query: 120 CTISE-LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T E ++P E E+IPL+I+YED +++VVNKP M+VHP +GTLVN +L++C
Sbjct: 63 YTFPEKVEPGTVEPENIPLNIIYEDHDIIVVNKPPDMIVHPVHNKTSGTLVNALLNYC-- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D + I G +RPGIVHRLDK TSG++VVAK
Sbjct: 121 -----------NDLQGI-----------GGIMRPGIVHRLDKETSGVIVVAK 150
>gi|419508000|ref|ZP_14047653.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49542]
gi|379611718|gb|EHZ76440.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA49542]
Length = 295
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDIVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE++PL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAENLPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|295396961|ref|ZP_06807083.1| ribosomal large subunit pseudouridine synthase D [Aerococcus
viridans ATCC 11563]
gi|294974814|gb|EFG50519.1| ribosomal large subunit pseudouridine synthase D [Aerococcus
viridans ATCC 11563]
Length = 322
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 24/163 (14%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI---SELQP 127
LRLD +++++ SR ++ I+ LV++NG+V +K S ++ GD++ +E +
Sbjct: 23 LRLDQFVTNQFTDESRTTIKKWIKDKLVTVNGKV-AKASQSLVNGDLIGVEKPAPAEAEE 81
Query: 128 LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQE 187
+ AE + LDIV+EDD++LVVNKPA++VVHP+ + T TLVNG+L+H QE
Sbjct: 82 FKPVAEKMALDIVFEDDDILVVNKPANLVVHPSVNHPTNTLVNGLLYHV---------QE 132
Query: 188 AFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S ++ S RPGIVHRLDK T+GLLVVAK
Sbjct: 133 NGSQL-----------AVGRESFRPGIVHRLDKDTTGLLVVAK 164
>gi|395787283|ref|ZP_10466884.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
gi|395411707|gb|EJF78228.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
Length = 334
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 24/175 (13%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+ D A RLD W++ + + +SR+R+Q+ IR G + ++GQ++ + +K ++
Sbjct: 4 RQITDEGALGKRLDQWLAKQYHNALSRSRLQNLIREGYLKVDGQLIREPKTKLKPNQIIE 63
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ L+ E I LDI++ED++V+V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 64 LAMPILRDAEPCGEAIILDILFEDNDVIVINKPAGLVVHPGNGNWTGTLVNALIHHCG-- 121
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
S S G RPGIVHRLDK TSG++VVAK F+
Sbjct: 122 ---------------------NSLSGIGGVKRPGIVHRLDKNTSGVMVVAKNDFA 155
>gi|339021492|ref|ZP_08645543.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter tropicalis NBRC 101654]
gi|338751473|dbj|GAA08847.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter tropicalis NBRC 101654]
Length = 436
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 95/175 (54%), Gaps = 23/175 (13%)
Query: 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
G L V + R+D ++S++ +SR+RV+ I SG + + +++ + +V+ G
Sbjct: 111 GSMLTFVVQPEQAGERVDRYVSAQSGTLSRSRVKGLIESGHLQCGAKQITEPAESVRAGM 170
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ I P + E +P +I YEDD+++V+NKPA +VVHPAPGN TGTLVNG++ HC
Sbjct: 171 ELVLHIPPATPAVPQGEAVPFEIFYEDDDLIVLNKPAGLVVHPAPGNETGTLVNGLIAHC 230
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKV 231
E I G RPGIVHRLDK TSGL+V AK
Sbjct: 231 G----------------------ESLKGIGGER-RPGIVHRLDKDTSGLMVAAKT 262
>gi|374997203|ref|YP_004972702.1| RluA family pseudouridine synthase [Desulfosporosinus orientis DSM
765]
gi|357215569|gb|AET70187.1| pseudouridine synthase, RluA family [Desulfosporosinus orientis DSM
765]
Length = 339
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 26/160 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++ + G SR+ VQ I + +NG + K ++ V+ GD + + Q L+A
Sbjct: 46 VRLDVGVTEVL-GRSRSYVQGLIIQNYILVNG-LSKKANYKVRFGDKITVMVPPPQELQA 103
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E E+IPL+I+YED++VLVVNKP MVVHPAPG GTLVN +L HC
Sbjct: 104 EPENIPLEILYEDEDVLVVNKPQGMVVHPAPGAWQGTLVNALLFHC-------------- 149
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G +RPGIVHR+DK TSG+LVVAK
Sbjct: 150 ---------HNLSGINGV-LRPGIVHRIDKDTSGILVVAK 179
>gi|328948139|ref|YP_004365476.1| RluA family pseudouridine synthase [Treponema succinifaciens DSM
2489]
gi|328448463|gb|AEB14179.1| pseudouridine synthase, RluA family [Treponema succinifaciens DSM
2489]
Length = 326
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 98/165 (59%), Gaps = 17/165 (10%)
Query: 66 TKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL 125
T G++RLD +I+S +G++R++++S I + +NG+ K+S VK D+++ E
Sbjct: 11 TYKGEIRLDKYIASLPNGMNRSKLKSGIVC--IQVNGKK-QKISCQVKANDIIDIQWEEN 67
Query: 126 QPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSN 185
P E E+IPLD +YED+NV VVNK MV HPA GN GTLVN +L+H
Sbjct: 68 VPDNIEPENIPLDTIYEDENVCVVNKKQGMVTHPAAGNWKGTLVNALLYHWG-------- 119
Query: 186 QEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E I + +E S ++ RPGIVHRLDK TSG+++ AK
Sbjct: 120 ------RESIPELKEGQVSKILSNRRPGIVHRLDKETSGIIITAK 158
>gi|86137869|ref|ZP_01056445.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
MED193]
gi|85825461|gb|EAQ45660.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
MED193]
Length = 346
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 91/162 (56%), Gaps = 26/162 (16%)
Query: 72 RLDAWISSRIDG---ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD +S + +SR R+ I +G ++++G VV V G ++ T+ E +
Sbjct: 17 RLDKAVSRDVPAEATLSRTRLARLIEAGSLTVDGVVVQDAKARVAEGAVITITVEEAEDS 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
EDI LD+++EDD+++V+NKP+ MVVHPAPG +GTLVN +LHHC
Sbjct: 77 HIGPEDIALDVIFEDDDLIVINKPSGMVVHPAPGTPSGTLVNALLHHCG----------- 125
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S + G RPGIVHR+DK TSGLLVVAK
Sbjct: 126 -----------ENLSGVGGVK-RPGIVHRIDKETSGLLVVAK 155
>gi|291087665|ref|ZP_06572048.1| ribosomal large subunit pseudouridine synthase D [Clostridium sp.
M62/1]
gi|291074400|gb|EFE11764.1| pseudouridine synthase, RluA family [Clostridium sp. M62/1]
Length = 300
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 24/171 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V +A +R+D ++S DG+SR+ +Q ++S LV ++ + V K S+ + G+ + +
Sbjct: 2 VPAEAQGVRIDKFLSEACDGLSRSYLQKLLKSELVEVDKRTV-KNSYKLSAGEKIEFEVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E +AEDIPLDI+YED ++++VNKP MVVHPA G+ + TLVNG+++HC
Sbjct: 61 EAAEPEIKAEDIPLDIIYEDSDIILVNKPKGMVVHPAAGHYSQTLVNGLMYHC------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ S I+G +RPGIVHR+D T+G+L+V K F+
Sbjct: 114 ---------------RDGLSGINGV-LRPGIVHRIDMDTTGVLIVCKNDFA 148
>gi|374602422|ref|ZP_09675415.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
gi|374392024|gb|EHQ63353.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
Length = 323
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 111/193 (57%), Gaps = 29/193 (15%)
Query: 39 CSSSSSGGNNREPIANYAGVQLEETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGL 97
++SS +N+E + + V L D +AG+ R+D +I+ ++ +SR++VQ IR
Sbjct: 4 LRTTSSEEDNQEAVEH--DVLLWTVTDAEAGE-RIDKYITESLEEPVSRSQVQLWIRDAH 60
Query: 98 VSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 157
V +NG+ V K ++ V GD + I + E IPLDI YED +V+V+NKP MVV
Sbjct: 61 VLVNGRSV-KPNYKVGAGDEIELRIPDPASTDIVPEAIPLDIYYEDADVIVINKPRGMVV 119
Query: 158 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 217
HPAPG+ +GT+VN ++HHC D+ S I+G +RPGIVHR
Sbjct: 120 HPAPGHLSGTVVNALMHHC----------------RDL-------SGING-ELRPGIVHR 155
Query: 218 LDKGTSGLLVVAK 230
+DK TSGLL+ AK
Sbjct: 156 IDKDTSGLLMAAK 168
>gi|16801023|ref|NP_471291.1| hypothetical protein lin1957 [Listeria innocua Clip11262]
gi|422413387|ref|ZP_16490346.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL S4-378]
gi|16414458|emb|CAC97187.1| lin1957 [Listeria innocua Clip11262]
gi|313618258|gb|EFR90322.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL S4-378]
Length = 302
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ ++ SR+ +Q +++G +++NG++ +K ++ V+ GD +
Sbjct: 8 IEESHARERVDKVIAEMMEK-SRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIRYEAR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEILAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|423098750|ref|ZP_17086458.1| pseudouridine synthase, RluA family [Listeria innocua ATCC 33091]
gi|370794577|gb|EHN62340.1| pseudouridine synthase, RluA family [Listeria innocua ATCC 33091]
Length = 302
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ + R+D I+ ++ SR+ +Q +++G +++NG++ +K ++ V+ GD +
Sbjct: 8 IEESHARERVDKVIAEMMEK-SRSAIQLMLKNGDITVNGEL-AKPNYKVQVGDEIRYEAR 65
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTLVN +L HC
Sbjct: 66 EPEELEILAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC------- 118
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DD S I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 119 -------------DD---LSGING-KIRPGIVHRIDKDTSGLLMVAK 148
>gi|416360087|ref|ZP_11682410.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Stockholm]
gi|338194505|gb|EGO86944.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Stockholm]
Length = 156
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 95/161 (59%), Gaps = 25/161 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +IS+ ++G SR+ +Q I+ G V +NG+ K ++ +K D V E + +
Sbjct: 16 RLDVFISNSLEGKSRSYIQKLIQEGHVKVNGKD-KKSNYKLKLHDSVIVNNIENESQKIN 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+I LDI+YED +++V+NKP MVVHPA N +GTLVN +L+HC TL++ N +
Sbjct: 75 PENIDLDILYEDKDIIVINKPQGMVVHPATSNYSGTLVNALLYHCD--TLSTLNDDT--- 129
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
RPGIVHR+DK TSG+LVVAK I
Sbjct: 130 -------------------RPGIVHRIDKDTSGVLVVAKTI 151
>gi|332654861|ref|ZP_08420603.1| ribosomal large subunit pseudouridine synthase D [Ruminococcaceae
bacterium D16]
gi|332516204|gb|EGJ45812.1| ribosomal large subunit pseudouridine synthase D [Ruminococcaceae
bacterium D16]
Length = 301
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 24/164 (14%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
+ G RLDA+++S+++ ++R+ Q + G V+ G+ + K + G +V + + Q
Sbjct: 9 QEGGERLDAFVASQVEDLTRSAAQRLLEQGAVTSGGKPLKKNAKTTPGM-VVEVLLPDPQ 67
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
P+ ++IPLD+VYEDD+V+VVNKP +VVHPAPG+ GTLVN +L+HC
Sbjct: 68 PVEIVPQNIPLDVVYEDDDVIVVNKPVGLVVHPAPGHPDGTLVNALLYHCG--------- 118
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I+G +RPGIVHR+D+ TSGL++ AK
Sbjct: 119 -------------DSLSGING-ELRPGIVHRIDRDTSGLIIAAK 148
>gi|323497826|ref|ZP_08102840.1| 23S rRNA pseudouridine synthase D [Vibrio sinaloensis DSM 21326]
gi|323317173|gb|EGA70170.1| 23S rRNA pseudouridine synthase D [Vibrio sinaloensis DSM 21326]
Length = 326
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 98/176 (55%), Gaps = 29/176 (16%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L TV D++ G+ RLD I+ SR+R++ + +G V +NG+VV+K V GG+
Sbjct: 5 IELTNTVKDSQLGQ-RLDQAIAELFADFSRSRLKEWLLAGKVQVNGEVVTKPRTKVMGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ R EA+DIPLDIVYEDD++LV+NKP VVHP G GT++N +LHH
Sbjct: 64 EIILQAELEDEERWEAQDIPLDIVYEDDDILVINKPRGFVVHPGAGTPDGTVLNALLHHY 123
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P++A R GIVHRLDK T+GL+VVAK +
Sbjct: 124 --PSIAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|325293793|ref|YP_004279657.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
H13-3]
gi|418407474|ref|ZP_12980792.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens 5A]
gi|325061646|gb|ADY65337.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
H13-3]
gi|358006618|gb|EHJ98942.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens 5A]
Length = 340
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D W++ + G +SR+R+++ I G V +NG V++ V D V + E +
Sbjct: 24 RIDVWLAGEVGGDLSRSRLKALIEQGAVLLNGTPVTEPKKKVHPHDRVEIVMPEPEDPEP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPLD+ YEDD+++V+ KPA +VVHP GN TGTLVN +++HC
Sbjct: 84 KGEDIPLDVEYEDDDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ---------DSLSGIGGVK-RPGIVHRLDKETSGVMVVAK 160
>gi|339301239|ref|ZP_08650348.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae ATCC 13813]
gi|417005689|ref|ZP_11944282.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae FSL S3-026]
gi|319745315|gb|EFV97632.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae ATCC 13813]
gi|341577502|gb|EGS27910.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae FSL S3-026]
Length = 296
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ K +RLD ++ + +SR++ I+ G+V +NGQV K + V+ GD + I
Sbjct: 3 ITIKIAGVRLDKALADNSE-LSRSQANEEIKKGIVLVNGQV-KKAKYTVQEGDRITFDIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + L +AE+IPLDI+Y+DD+V VVNKP MVVH + G+++GTLVN +++H
Sbjct: 61 KEEVLDYQAENIPLDIIYQDDDVAVVNKPQGMVVHSSAGHSSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ---------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|373464369|ref|ZP_09555908.1| pseudouridine synthase, RluA family [Lactobacillus kisonensis
F0435]
gi|371762571|gb|EHO51100.1| pseudouridine synthase, RluA family [Lactobacillus kisonensis
F0435]
Length = 302
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 97/169 (57%), Gaps = 26/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
+T++ RLD +S ISR+R + I G +++NG+V K + V+ GD ++ +
Sbjct: 2 KTIEVSTHTGRLDKVVSEIEPTISRSRAKKLIDDGDITVNGEV-KKPKYPVEIGDKISIS 60
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
E Q + E E+IPLDIVYEDD+V+VVNKP MVVHP+ G+ TLVN +L H L
Sbjct: 61 NPEPQAINLEPENIPLDIVYEDDDVIVVNKPQGMVVHPSAGHPNHTLVNALLFHSPL--- 117
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 118 ---------------------STING-EYRPGIVHRIDKDTSGLLMVAK 144
>gi|419718765|ref|ZP_14246071.1| pseudouridine synthase, RluA family [Lachnoanaerobaculum saburreum
F0468]
gi|383305105|gb|EIC96484.1| pseudouridine synthase, RluA family [Lachnoanaerobaculum saburreum
F0468]
Length = 303
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 98/161 (60%), Gaps = 28/161 (17%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ ++ SR+ +Q I+ G V+IN +++ K ++ +K G+ V I + +PL
Sbjct: 16 RIDLFLAKNLESFSRSYIQDLIKKGKVTINNKII-KANYRLKEGECVVLDIPKPEPLEIV 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IP+DI+YED++V++VNKP MVVHPA G+ GTLVN +L+HC
Sbjct: 75 PENIPIDILYEDEDVILVNKPKGMVVHPAAGHYKGTLVNALLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
S++SG + +RPGIVHR+D T+G++++ K
Sbjct: 120 ----------KSNLSGINGVLRPGIVHRIDMDTTGVIIICK 150
>gi|25011477|ref|NP_735872.1| hypothetical protein gbs1435 [Streptococcus agalactiae NEM316]
gi|24413015|emb|CAD47094.1| unknown [Streptococcus agalactiae NEM316]
Length = 296
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ K +RLD ++ + +SR++ I+ G+V +NGQV K + V+ GD + I
Sbjct: 3 ITIKIAGVRLDKALADNSE-LSRSQANEEIKKGIVLVNGQV-KKAKYTVQEGDRITFDIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + L +AE+I LDI+Y+DD+V VVNKP MVVHP+ G+++GTLVN +++H
Sbjct: 61 KEEVLDYQAENISLDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ---------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|315651411|ref|ZP_07904436.1| ribosomal large subunit pseudouridine synthase D
[Lachnoanaerobaculum saburreum DSM 3986]
gi|315486370|gb|EFU76727.1| ribosomal large subunit pseudouridine synthase D
[Lachnoanaerobaculum saburreum DSM 3986]
Length = 303
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 98/161 (60%), Gaps = 28/161 (17%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ ++ SR+ +Q I+ G V+IN +++ K ++ +K G+ V I + +PL
Sbjct: 16 RIDLFLAKNLESFSRSYIQDLIKKGKVTINNKII-KANYRLKEGECVVLDIPKPEPLEIV 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IP+DI+YED++V++VNKP MVVHPA G+ GTLVN +L+HC
Sbjct: 75 PENIPIDILYEDEDVILVNKPKGMVVHPAAGHYKGTLVNALLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
S++SG + +RPGIVHR+D T+G++++ K
Sbjct: 120 ----------KSNLSGINGVLRPGIVHRIDMDTTGVIIICK 150
>gi|227514877|ref|ZP_03944926.1| pseudouridylate synthase [Lactobacillus fermentum ATCC 14931]
gi|227086724|gb|EEI22036.1| pseudouridylate synthase [Lactobacillus fermentum ATCC 14931]
Length = 291
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D + SR++++ I G V++NGQ V K + ++ GD V + E
Sbjct: 4 RIDKELGHHFPQFSRSQLKRWIDDGTVTVNGQTV-KAKYQLQAGDRVVIKPETPVEIDLE 62
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TLVN ++++ L
Sbjct: 63 PENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALMYYAPL------------- 109
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 110 -----------SSING-ELRPGIVHRIDKDTSGLLMVAK 136
>gi|340355065|ref|ZP_08677758.1| ribosomal large subunit pseudouridine synthase D [Sporosarcina
newyorkensis 2681]
gi|339622746|gb|EGQ27260.1| ribosomal large subunit pseudouridine synthase D [Sporosarcina
newyorkensis 2681]
Length = 302
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 100/169 (59%), Gaps = 26/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + AG R+D ++ SR ++Q ++ + +NG + K ++ VK GD+V+
Sbjct: 7 EITEETAGN-RIDKALALLQPDWSRTQIQQWVKDERIQVNGSFI-KSNYKVKTGDVVSVE 64
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
E + EAED+ L+IVYED +VLVVNKP MVVHP+PG+ +GTLVNG++H C+
Sbjct: 65 QPEPEAYDIEAEDLNLEIVYEDQDVLVVNKPVGMVVHPSPGHLSGTLVNGLMHQCT---- 120
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>gi|304320252|ref|YP_003853895.1| ribosomal large subunit pseudouridine synthase protein
[Parvularcula bermudensis HTCC2503]
gi|303299154|gb|ADM08753.1| putative ribosomal large subunit pseudouridine synthase protein
[Parvularcula bermudensis HTCC2503]
Length = 338
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD WI+ + D SRAR+++ I G ++ + + ++ G++ + +
Sbjct: 19 RLDKWIADQTDAYSRARIKALIEGGALTKDAAPFTDPKWKLRQGEVFTLVPPPPEDPTPK 78
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPL +++ED +++V+NKPA +VVHPA GN TGTLVN +LHHC
Sbjct: 79 PEDIPLTVLFEDGDLIVINKPAGLVVHPAAGNWTGTLVNALLHHCG-------------- 124
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G IRPGIVHRLDK TSG++V+AK
Sbjct: 125 --------DTLSGIGGV-IRPGIVHRLDKDTSGVMVIAK 154
>gi|374577862|ref|ZP_09650958.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
gi|374426183|gb|EHR05716.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
Length = 335
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 98/174 (56%), Gaps = 27/174 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE V+ G RLD ++ + +SR+R+++ I +G VS+ + +++V GD +
Sbjct: 9 RLEVVVEGSEGSTRLDRVLAVHLAELSRSRLKALILAGAVSLRDAAIRDPAYHVASGDTI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTLVN ++ HC
Sbjct: 69 TIDVPEAAAPEPKGEDIALDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLVNALIAHC-- 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVVAK 230
SS+S G RPGIVHRLDK T+GL+VVAK
Sbjct: 127 -----------------------GSSLSGIGGVRRPGIVHRLDKDTTGLMVVAK 157
>gi|417937499|ref|ZP_12580799.1| pseudouridine synthase, RluA family [Streptococcus infantis SK970]
gi|343391763|gb|EGV04336.1| pseudouridine synthase, RluA family [Streptococcus infantis SK970]
Length = 297
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G +RLD +S + +SR+ I+SG V +NGQV K + V+ GD++ +
Sbjct: 3 IKIETGGVRLDKALSDLTE-LSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVITYQVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE+IPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAENIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|308048517|ref|YP_003912083.1| ribosomal large subunit pseudouridine synthase D [Ferrimonas
balearica DSM 9799]
gi|307630707|gb|ADN75009.1| ribosomal large subunit pseudouridine synthase D [Ferrimonas
balearica DSM 9799]
Length = 323
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 30/176 (17%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
D++ G+ RLD ++ SR+R++ I + VS+NG+ V+K V GG+ V
Sbjct: 13 DSQLGQ-RLDQALAECFPDYSRSRIKEWILAERVSLNGKTVAKPREKVMGGEAVLIQAEF 71
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
+ + A+ +DI LDIVYEDD++LV+NKPA +VVHP GN GT++N +LHHC P++A+
Sbjct: 72 EEEVAAKPQDIALDIVYEDDDILVINKPADLVVHPGAGNHDGTVLNALLHHC--PSIANV 129
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFGNHF 240
R GIVHRLDK T+GL+VVAK I P H
Sbjct: 130 P-------------------------RAGIVHRLDKDTTGLMVVAKTI--PAQTHL 158
>gi|325288855|ref|YP_004265036.1| ribosomal large subunit pseudouridine synthase D [Syntrophobotulus
glycolicus DSM 8271]
gi|324964256|gb|ADY55035.1| ribosomal large subunit pseudouridine synthase D [Syntrophobotulus
glycolicus DSM 8271]
Length = 312
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 26/161 (16%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
++RLD ++ + G SR+ +++ I G V +NG+ K ++ ++ D + + + + L+
Sbjct: 22 EVRLDVCLTEKT-GTSRSFIRNMIEEGRVLVNGET-KKANYRIRAEDKIGINLPKPRELK 79
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
+ IPL+I+YEDD++LVVNKP MVVHPAPG GTLVN +L+HC
Sbjct: 80 VVPQQIPLEIIYEDDDLLVVNKPQGMVVHPAPGVWEGTLVNALLYHCR------------ 127
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G IRPGIVHR+DK TSGLLVVAK
Sbjct: 128 ----DL-------SGINGI-IRPGIVHRIDKDTSGLLVVAK 156
>gi|254467318|ref|ZP_05080729.1| ribosomal large subunit pseudouridine synthase D [Rhodobacterales
bacterium Y4I]
gi|206688226|gb|EDZ48708.1| ribosomal large subunit pseudouridine synthase D [Rhodobacterales
bacterium Y4I]
Length = 341
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 92/164 (56%), Gaps = 30/164 (18%)
Query: 72 RLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD +S + +SR R+ I G ++++G VV NV G ++ + E +
Sbjct: 17 RLDKAVSRDVPEEAALSRTRLARLIGEGALTVDGAVVQDPKANVAAGAVIAIEVEEAEDS 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
EDIPL+IV+EDD+++V+NKPA MVVHPAPG+ +GTLVN +LHH
Sbjct: 77 HIGPEDIPLEIVFEDDDLIVINKPAGMVVHPAPGSPSGTLVNALLHH------------- 123
Query: 189 FSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
F ++SG RPGIVHR+DK TSGLLVVAK
Sbjct: 124 ------------FGGNLSGVGGVKRPGIVHRIDKETSGLLVVAK 155
>gi|89098727|ref|ZP_01171609.1| ribosomal large subunit pseudouridine synthase D [Bacillus sp. NRRL
B-14911]
gi|89086689|gb|EAR65808.1| ribosomal large subunit pseudouridine synthase D [Bacillus sp. NRRL
B-14911]
Length = 301
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 101/172 (58%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
++E ++ + RLD +S + +SR++ Q I+ G + +NGQ +K ++ D +
Sbjct: 3 KMEYIINEEVAGERLDKAVSLLNEELSRSQAQQMIKDGHILVNGQG-TKTNYKCSIDDKI 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E + L E++ LDI YED +VLVVNKP MVVHPAPG+A+GTLVNG++ HC
Sbjct: 62 EISFPEPEELDVLPEEMDLDIYYEDGDVLVVNKPKGMVVHPAPGHASGTLVNGLMAHC-- 119
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|15889714|ref|NP_355395.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Agrobacterium fabrum str. C58]
gi|15157624|gb|AAK88180.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Agrobacterium fabrum str. C58]
Length = 340
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D W+ + +SR+R+++ I G V +NGQ V++ V GD V + E +
Sbjct: 24 RIDVWLVGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPLD+ YED++++V+ KPA +VVHP GN TGTLVN +++HC
Sbjct: 84 QGEDIPLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ---------DSLSGIGGVK-RPGIVHRLDKETSGVMVVAK 160
>gi|417001126|ref|ZP_11941040.1| pseudouridine synthase, RluA family [Veillonella parvula
ACS-068-V-Sch12]
gi|333975609|gb|EGL76488.1| pseudouridine synthase, RluA family [Veillonella parvula
ACS-068-V-Sch12]
Length = 307
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 26/170 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E V + +RLD +++ +++G SR+ +QS I+ G V++ G+V K + + +++
Sbjct: 3 EYIVSAEQEGMRLDVFLTEQMEG-SRSYIQSLIKGGHVTVGGKV-GKANLRLTPDTVIHV 60
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I E + + + EDIPLD +YED ++++VNKP MVVHPA GN +GTLVN +L HC
Sbjct: 61 EIPEPESIEVKPEDIPLDYLYEDHDIVIVNKPRGMVVHPAVGNYSGTLVNALLFHC---- 116
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHRLDK TSG+++VAK
Sbjct: 117 ------------KDL-------SGING-EIRPGIVHRLDKDTSGVMMVAK 146
>gi|419781535|ref|ZP_14307354.1| pseudouridine synthase, RluA family [Streptococcus oralis SK100]
gi|383184135|gb|EIC76662.1| pseudouridine synthase, RluA family [Streptococcus oralis SK100]
Length = 299
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G RLD +S + +SR+ I++G V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGQRLDKALSD-LTELSRSLANEQIKAGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|327404084|ref|YP_004344922.1| ribosomal large subunit pseudouridine synthase D [Fluviicola
taffensis DSM 16823]
gi|327319592|gb|AEA44084.1| ribosomal large subunit pseudouridine synthase D [Fluviicola
taffensis DSM 16823]
Length = 342
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T D +R+D ++ R+ SR ++QS+ +SG V +NG V K ++ +K D V +
Sbjct: 22 TADLGQESVRIDKYLLDRMPNTSRNKIQSAAKSGSVVVNGSSV-KSNYKIKPKDEVTIVL 80
Query: 123 SE-LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
++ L A+DIP+DIVYEDD V+VVNKP +MVVHP GN TGTLVN +++H L
Sbjct: 81 PYPVRELELIAQDIPIDIVYEDDEVIVVNKPPNMVVHPGYGNYTGTLVNALVYHFD--NL 138
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ F RPG+VHRLDK T+G++VVAK
Sbjct: 139 PERKLDYFG--------------------RPGLVHRLDKHTTGVMVVAK 167
>gi|422860241|ref|ZP_16906885.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK330]
gi|327470139|gb|EGF15603.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK330]
Length = 298
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 26/171 (15%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E +++ RLD ++ D +SR+ I+ GL+ +NGQ K + VK GD+++
Sbjct: 1 MEVRIESSVAGQRLDKAVAELTD-LSRSLANEQIKDGLILVNGQA-KKAKYAVKEGDVIS 58
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E + + AEDIPL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 59 YELPESEVVEYVAEDIPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI--- 115
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 116 -------------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 145
>gi|313896045|ref|ZP_07829599.1| pseudouridine synthase, RluA family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975470|gb|EFR40931.1| pseudouridine synthase, RluA family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 301
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 100/169 (59%), Gaps = 28/169 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ +I+ SR+ VQ I G V ++G V K ++ ++ G+ + CT+ + +
Sbjct: 12 RLDVFLARQIENCSRSYVQRLITDGNVRVDGAPV-KPNYKLRSGEEICCTVPPAEEVVIA 70
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPLD++YED++++V+NK MVVHPA GN TGTLVN +L C
Sbjct: 71 AEDIPLDVLYEDEDIIVINKARGMVVHPAAGNLTGTLVNALLFRC--------------- 115
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFGNHF 240
D+ S I+G +RPGIVHRLDK TSG++V AK + +HF
Sbjct: 116 -RDL-------SGING-ELRPGIVHRLDKDTSGVMVAAK---NDMAHHF 152
>gi|149280326|ref|ZP_01886447.1| pseudouridylate synthase, 23S RNA-specific [Pedobacter sp. BAL39]
gi|149228875|gb|EDM34273.1| pseudouridylate synthase, 23S RNA-specific [Pedobacter sp. BAL39]
Length = 343
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 29/170 (17%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD LR+D ++ R++ SR R+Q++I +G V +NG+ V K S+ VK D ++
Sbjct: 23 VDKGQSLLRVDKFLMGRMENASRNRIQNAIDAGNVLVNGKTV-KSSYKVKPADEISIVFP 81
Query: 124 ELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI-LHHCSLPT 180
P E EDIPLDIVYED+++LVVNKPA MVVHP N TGTLVN + H LP
Sbjct: 82 H-PPRDTEVYPEDIPLDIVYEDNDLLVVNKPAGMVVHPGYNNYTGTLVNALAFHFEQLPQ 140
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L G RPG+VHR+DK TSGLL+++K
Sbjct: 141 LP------------------------GNEGRPGLVHRIDKDTSGLLLISK 166
>gi|389856694|ref|YP_006358937.1| RluA family pseudouridine synthase [Streptococcus suis ST1]
gi|353740412|gb|AER21419.1| pseudouridine synthase, RluA family [Streptococcus suis ST1]
Length = 297
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V + G +RLD +S D +SR+ I++G V +NGQ K ++V+ GD++ I
Sbjct: 3 VRVEVGGIRLDKALSDLTD-LSRSVANEQIKAGQVLVNGQP-KKAKYSVQVGDVLTYQIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E++ + AEDIPL+IV++D++V VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 61 EVEEIDYVAEDIPLEIVFQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALLYHV------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|406576385|ref|ZP_11052014.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD6S]
gi|404461392|gb|EKA07323.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD6S]
Length = 299
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G RLD +S + +SR+ I++G V +NG +V K + V+ GD+V +
Sbjct: 3 IKIETGGQRLDKALSD-LTELSRSLANEQIKAGQVLVNG-LVKKAKYTVQEGDIVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLDIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|372223509|ref|ZP_09501930.1| RluA family pseudouridine synthase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 342
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 29/162 (17%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
LR+D ++ + I+ +R ++Q + + G + +NG V K ++ VK GD+V + E P
Sbjct: 29 LRVDKFLMNFIENATRNKIQQAAKDGHIWVNGATV-KQNYKVKAGDVVKV-LFEHPPYEY 86
Query: 131 --EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E IPLDIVYEDD+++VVNKPA MVVHP GN +GTLVN +++H
Sbjct: 87 LLTPEAIPLDIVYEDDHLMVVNKPAGMVVHPGHGNYSGTLVNALVYH------------- 133
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
F S + +S RPG+VHR+DK TSGLLV+AK
Sbjct: 134 ------------FESLPNNSSGRPGLVHRIDKDTSGLLVIAK 163
>gi|282850533|ref|ZP_06259912.1| pseudouridine synthase, RluA family [Veillonella parvula ATCC
17745]
gi|282580026|gb|EFB85430.1| pseudouridine synthase, RluA family [Veillonella parvula ATCC
17745]
Length = 307
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 26/170 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E V + +RLD +++ +++G SR+ +QS I+ G V++ G+V K + + ++
Sbjct: 3 EYIVSAEQEGMRLDVFLTEQMEG-SRSYIQSLIKGGHVTVGGKV-GKANLRLTPDTIIRV 60
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I E + + + EDIPLD +YED ++++VNKP MVVHPA GN +GTLVN +L HC
Sbjct: 61 EIPEPESIEVKPEDIPLDYLYEDHDIVIVNKPRGMVVHPAVGNYSGTLVNALLFHC---- 116
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHRLDK TSG+++VAK
Sbjct: 117 ------------KDL-------SGING-EIRPGIVHRLDKDTSGVMMVAK 146
>gi|223934286|ref|ZP_03626210.1| pseudouridine synthase, RluA family [Streptococcus suis 89/1591]
gi|253751575|ref|YP_003024716.1| RNA pseudouridylate synthase [Streptococcus suis SC84]
gi|253753476|ref|YP_003026617.1| RNA pseudouridylate synthase [Streptococcus suis P1/7]
gi|253755698|ref|YP_003028838.1| RNA pseudouridylate synthase [Streptococcus suis BM407]
gi|330832720|ref|YP_004401545.1| RluA family pseudouridine synthase [Streptococcus suis ST3]
gi|386577763|ref|YP_006074169.1| hypothetical protein [Streptococcus suis GZ1]
gi|386579818|ref|YP_006076223.1| RluA family pseudouridine synthase [Streptococcus suis JS14]
gi|386581762|ref|YP_006078166.1| RluA family pseudouridine synthase [Streptococcus suis SS12]
gi|386583987|ref|YP_006080390.1| RluA family pseudouridine synthase [Streptococcus suis D9]
gi|386587998|ref|YP_006084399.1| RluA family pseudouridine synthase [Streptococcus suis A7]
gi|403061401|ref|YP_006649617.1| RluA family pseudouridine synthase [Streptococcus suis S735]
gi|31364860|gb|AAP49462.1| YlyB [Streptococcus suis]
gi|223897042|gb|EEF63479.1| pseudouridine synthase, RluA family [Streptococcus suis 89/1591]
gi|251815864|emb|CAZ51475.1| putative RNA pseudouridylate synthase [Streptococcus suis SC84]
gi|251818162|emb|CAZ55959.1| putative RNA pseudouridylate synthase [Streptococcus suis BM407]
gi|251819722|emb|CAR45564.1| putative RNA pseudouridylate synthase [Streptococcus suis P1/7]
gi|292558226|gb|ADE31227.1| YlyB [Streptococcus suis GZ1]
gi|319758010|gb|ADV69952.1| pseudouridine synthase, RluA family [Streptococcus suis JS14]
gi|329306943|gb|AEB81359.1| pseudouridine synthase, RluA family [Streptococcus suis ST3]
gi|353733908|gb|AER14918.1| pseudouridine synthase, RluA family [Streptococcus suis SS12]
gi|353736133|gb|AER17142.1| pseudouridine synthase, RluA family [Streptococcus suis D9]
gi|354985159|gb|AER44057.1| pseudouridine synthase, RluA family [Streptococcus suis A7]
gi|402808727|gb|AFR00219.1| RluA family pseudouridine synthase [Streptococcus suis S735]
Length = 297
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V + G +RLD +S D +SR+ I++G V +NGQ K ++V+ GD++ I
Sbjct: 3 VRVEVGGIRLDKALSDLTD-LSRSVANEQIKAGQVLVNGQP-KKAKYSVQVGDVLTYQIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E++ + AEDIPL+IV++D++V VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 61 EVEEIDYVAEDIPLEIVFQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALLYHV------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|408370334|ref|ZP_11168111.1| RluA family pseudouridine synthase [Galbibacter sp. ck-I2-15]
gi|407744092|gb|EKF55662.1| RluA family pseudouridine synthase [Galbibacter sp. ck-I2-15]
Length = 343
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 96/178 (53%), Gaps = 33/178 (18%)
Query: 59 QLEETVDTKAGK----LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKG 114
+L E AGK LR+D ++ + I+ +R ++Q + + G + +NG V K +H VK
Sbjct: 14 ELFEHYSFTAGKGQEPLRVDKFLMNFIENATRNKIQQAAKGGNIYVNGHAV-KSNHKVKA 72
Query: 115 GDMVNCTISEL-QPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG-I 172
D V EDIPLDIVYEDD +LVVNKPA MVVHP GN +GTL+N I
Sbjct: 73 NDQVKVLFEHPPHEYLLTPEDIPLDIVYEDDELLVVNKPAGMVVHPGHGNYSGTLINALI 132
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
H +LP +SN+ RPG+VHR+DK TSGLLVVAK
Sbjct: 133 FHFDNLPL--NSNE------------------------RPGLVHRIDKDTSGLLVVAK 164
>gi|373857246|ref|ZP_09599988.1| pseudouridine synthase, RluA family [Bacillus sp. 1NLA3E]
gi|372452896|gb|EHP26365.1| pseudouridine synthase, RluA family [Bacillus sp. 1NLA3E]
Length = 303
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 97/159 (61%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D IS+ SR +VQS I+ G V +NG+ V K ++ D + TI + + L E
Sbjct: 16 RIDKVISTLNQEWSRTQVQSWIKEGHVLVNGEKV-KTNYKCHVQDELTVTIPDPEDLDVE 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E++ L+I YED +VLVVNKP+ MVVHPAPG+ +GTLVNG++ HC
Sbjct: 75 PEEMNLEIYYEDKDVLVVNKPSGMVVHPAPGHLSGTLVNGLMAHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 -KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|417915153|ref|ZP_12558774.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
SK95]
gi|342835267|gb|EGU69518.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
SK95]
Length = 299
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G RLD +S + +SR+ I++G V +NGQ K + V+ GD+V +
Sbjct: 3 IKIETGGQRLDKALSD-LTELSRSLANDQIKAGQVLVNGQA-KKAKYTVQEGDIVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLDIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|269798295|ref|YP_003312195.1| pseudouridine synthase [Veillonella parvula DSM 2008]
gi|269094924|gb|ACZ24915.1| pseudouridine synthase, RluA family [Veillonella parvula DSM 2008]
Length = 305
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 26/170 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E V + +RLD +++ +++G SR+ +QS I+ G V++ G+V K + + ++
Sbjct: 3 EYIVSAEQEGMRLDVFLTEQMEG-SRSYIQSLIKGGHVTVGGKV-GKANLRLTPDTVIRV 60
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
I E + + + EDIPLD +YED ++++VNKP MVVHPA GN +GTLVN +L HC
Sbjct: 61 EIPEPESIEVKPEDIPLDYLYEDHDIVIVNKPRGMVVHPAVGNYSGTLVNALLFHC---- 116
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHRLDK TSG+++VAK
Sbjct: 117 ------------KDL-------SGING-EIRPGIVHRLDKDTSGVMMVAK 146
>gi|450001697|ref|ZP_21825778.1| putative pseudouridylate synthase [Streptococcus mutans N29]
gi|449184277|gb|EMB86231.1| putative pseudouridylate synthase [Streptococcus mutans N29]
Length = 296
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
++ K +RLD ++ D +SR++V I++GLV +NG+ K + VK GD+++
Sbjct: 3 IEIKEAGVRLDKALADLTD-LSRSQVSEQIKAGLVWVNGKT-QKAKYAVKEGDIIHYERP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + L A++IPL+IVYED++V V+NKP MVVHP+ G+ +GTLVN +L H
Sbjct: 61 QEEVLDCVAQNIPLEIVYEDEDVAVINKPQGMVVHPSVGHPSGTLVNALLFHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAK 143
>gi|386344155|ref|YP_006040319.1| pseudouridine synthase [Streptococcus thermophilus JIM 8232]
gi|387909307|ref|YP_006339613.1| pseudouridine synthase [Streptococcus thermophilus MN-ZLW-002]
gi|339277616|emb|CCC19364.1| pseudouridine synthase [Streptococcus thermophilus JIM 8232]
gi|387574242|gb|AFJ82948.1| pseudouridine synthase [Streptococcus thermophilus MN-ZLW-002]
Length = 296
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 105/169 (62%), Gaps = 27/169 (15%)
Query: 62 ETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121
E + +AG RLD ++ + +SR++ +I++G V +NG+ +K + VK GD++
Sbjct: 2 EVIIKEAGN-RLDKSLAD-LTELSRSQANEAIKAGTVLVNGKS-AKAKYVVKEGDVITYV 58
Query: 122 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ E + L +AEDIPLDI+YED +V VVNKP +VVHP+ G+ +GTLVN +++H
Sbjct: 59 LPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGIVVHPSAGHTSGTLVNALMYHV----- 113
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 -----------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAK 143
>gi|386398266|ref|ZP_10083044.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
gi|385738892|gb|EIG59088.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
Length = 335
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 98/174 (56%), Gaps = 27/174 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+LE V+ G RLD ++ + +SR+R+++ I +G VS+ + +++V GD +
Sbjct: 9 RLEIVVEGSEGSTRLDRVLAVHLAELSRSRLKALILAGAVSLRDAAIRDPAYHVASGDTI 68
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ E + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTLVN ++ HC
Sbjct: 69 TIDVPEAAAPEPKGEDIALDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLVNALIAHC-- 126
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVVAK 230
SS+S G RPGIVHRLDK T+GL+VVAK
Sbjct: 127 -----------------------GSSLSGIGGVRRPGIVHRLDKDTTGLMVVAK 157
>gi|342217473|ref|ZP_08710117.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 135-E]
gi|341594276|gb|EGS37076.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 135-E]
Length = 305
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 97/174 (55%), Gaps = 30/174 (17%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q E ++ G +RLD ++ + ISRA Q I+ V +N K ++ + G MV
Sbjct: 4 QTYEVIEADKG-IRLDVLVAREL-AISRAFAQQLIKEEKVYVN-DCKRKANYRLDVGQMV 60
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
S+ L A E+IPLDI+YED++++VVNKP MVVHPAPGN GTLVN +L+HC
Sbjct: 61 AMEPSQPTELCATPENIPLDILYEDEHLIVVNKPRGMVVHPAPGNPAGTLVNALLYHC-- 118
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 230
S+SG + IRPGIVHRLDK TSG++VVAK
Sbjct: 119 -----------------------QGSLSGINGMIRPGIVHRLDKDTSGVMVVAK 149
>gi|340754555|ref|ZP_08691301.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
D12]
gi|313685570|gb|EFS22405.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
D12]
Length = 318
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 23/159 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ ++ +R+ ++ I G V + +V++K +KG + + +I E + ++ E
Sbjct: 20 RLDLFLKEQLPEATRSYLEKLIAEGYVKCDEKVITKNGKKLKGKEAIQVSIPEEEEMKME 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE +PLDIVYED+ +LV+NK A+MVVHPA GN TGTLVN +L++C +E+ SD
Sbjct: 80 AEKLPLDIVYEDEYLLVINKAANMVVHPALGNYTGTLVNALLYYC---------KESLSD 130
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++RPGIVHRLDK T+GL+VVAK
Sbjct: 131 V--------------NGTLRPGIVHRLDKDTTGLIVVAK 155
>gi|427392578|ref|ZP_18886583.1| RluA family pseudouridine synthase [Alloiococcus otitis ATCC 51267]
gi|425731258|gb|EKU94077.1| RluA family pseudouridine synthase [Alloiococcus otitis ATCC 51267]
Length = 304
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 101/170 (59%), Gaps = 27/170 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
E +D + G RLD +S +++ +SR+++Q I++ V++NGQ V K ++ V GD V
Sbjct: 6 EVRIDQEKG--RLDKVLSDQLNDLSRSKIQDLIQTDQVTVNGQAV-KANYQVAKGDKVVL 62
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
TI +Q + EAE IP+ IVY+D ++ VVNKP +MVVHP+ G+ TLVN +L+ L
Sbjct: 63 TIPPVQEVNLEAEAIPVPIVYQDSDLAVVNKPQNMVVHPSLGHPDHTLVNALLY--QLDN 120
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
L+ N E +RPGIVHR+DK TSGLLVVAK
Sbjct: 121 LSGINGE----------------------LRPGIVHRIDKDTSGLLVVAK 148
>gi|254509457|ref|ZP_05121534.1| ribosomal large subunit pseudouridine synthase D [Vibrio
parahaemolyticus 16]
gi|219547619|gb|EED24667.1| ribosomal large subunit pseudouridine synthase D [Vibrio
parahaemolyticus 16]
Length = 326
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 97/176 (55%), Gaps = 29/176 (16%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L TV D++ G+ RLD I+ SR+R++ + +G V +NG+VV+K V GG+
Sbjct: 5 IELTNTVKDSQLGQ-RLDQAIAELFADFSRSRLKEWLLAGKVQVNGEVVTKPRTKVMGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ R EA+DIPLDIVYEDD++LV+NKP VVHP G GT++N +LHH
Sbjct: 64 EIILQAELEDEERWEAQDIPLDIVYEDDDILVINKPRGFVVHPGAGTPDGTVLNALLHHY 123
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A R GIVHRLDK T+GL+VVAK +
Sbjct: 124 --PNIAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|414168204|ref|ZP_11424408.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410888247|gb|EKS36051.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 324
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 93/168 (55%), Gaps = 23/168 (13%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV G RLD ++ +SR+R+++ I +G V + G V +++V GD + +
Sbjct: 2 TVRGDEGSRRLDRVLAVHSPDLSRSRLKALILAGQVHVGGSPVRDPAYHVSAGDTITIDV 61
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
P E EDIPLDIV+ED +++V++KP ++VVHPA G+ TGTLVN ++ HC
Sbjct: 62 PPAAPAEPEGEDIPLDIVFEDGDLIVIDKPKNLVVHPAAGHETGTLVNALIAHCG----- 116
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G RPGIVHRLDK T+GL+VVAK
Sbjct: 117 ------------------ASLSGIGGVKRPGIVHRLDKDTTGLMVVAK 146
>gi|354807589|ref|ZP_09041052.1| pseudouridine synthase, RluA family protein [Lactobacillus curvatus
CRL 705]
gi|354513924|gb|EHE85908.1| pseudouridine synthase, RluA family protein [Lactobacillus curvatus
CRL 705]
Length = 301
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 93/168 (55%), Gaps = 28/168 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T+ T+ G R+D ++ + SR+++Q ++ LV +N Q K + V GD+V I
Sbjct: 8 TITTETG--RIDKALTQLLPDYSRSQIQQWLKKDLVQVNDQP-CKSNRKVVTGDVVTVNI 64
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+ L EDIPLDIVYEDD VLVVNKP MVVHP+ G+ GTLVN +L H L
Sbjct: 65 PDPVTLDLTPEDIPLDIVYEDDQVLVVNKPQGMVVHPSAGHPNGTLVNALLAHTPL---- 120
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I+G RPGIVHR+DK TSGLL+VAK
Sbjct: 121 --------------------SEINGV-FRPGIVHRIDKDTSGLLMVAK 147
>gi|33239671|ref|NP_874613.1| pseudouridylate synthase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237196|gb|AAP99265.1| 23S RNA-specific pseudouridylate synthase [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 318
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 28/174 (16%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L + + K +RLD W+ S+ SRAR+Q I GLV +NG + K ++ GD +
Sbjct: 15 ELVKLIYPKPLPMRLDRWLVSQRSEQSRARIQKFIEDGLVLVNG-IQGKSKTPLRTGDEI 73
Query: 119 NCTISELQPL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ +PL + + + LDI++ED +++V+NKPA + VHPAPGN TLVNG+LHHC+
Sbjct: 74 QLWVPPPEPLPYLKPQKMHLDIIFEDSHIIVINKPAGLTVHPAPGNKDRTLVNGLLHHCT 133
Query: 178 -LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
LP I+G +RPGIVHRLDK T+G +V+AK
Sbjct: 134 DLP------------------------GING-KLRPGIVHRLDKDTTGCIVIAK 162
>gi|146318440|ref|YP_001198152.1| YlyB [Streptococcus suis 05ZYH33]
gi|145689246|gb|ABP89752.1| YlyB [Streptococcus suis 05ZYH33]
Length = 309
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V + G +RLD +S D +SR+ I++G V +NGQ K ++V+ GD++ I
Sbjct: 3 VRVEVGGIRLDKALSDLTD-LSRSVANEQIKAGQVLVNGQP-KKAKYSVQVGDVLTYQIP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E++ + AEDIPL+IV++D++V VVNKP MVVHP+ G+ +GTLVN +L+H
Sbjct: 61 EVEEIDYVAEDIPLEIVFQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALLYHV------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|328952411|ref|YP_004369745.1| RluA family pseudouridine synthase [Desulfobacca acetoxidans DSM
11109]
gi|328452735|gb|AEB08564.1| pseudouridine synthase, RluA family [Desulfobacca acetoxidans DSM
11109]
Length = 331
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 27/170 (15%)
Query: 63 TVDTKAGK--LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
T+D +A + LRLD ++ ++ SRAR+Q I++GLV +N Q + ++++ GD V
Sbjct: 17 TLDVEAEEEGLRLDHFLVRKMPSFSRARLQRWIKAGLVQVN-QEERQPHYHMRKGDRVAV 75
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
+ E+Q E IPL I+YED+++L +NKP + VHP G ++GTLVN +LHHC
Sbjct: 76 SPPEVQRWHLAPEPIPLKILYEDEDLLALNKPPGLTVHPGAGQSSGTLVNALLHHC---- 131
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D I D + RPG+VHRLDK TSG++VVAK
Sbjct: 132 ---------PDLGGIGDVQ-----------RPGLVHRLDKDTSGVMVVAK 161
>gi|306833765|ref|ZP_07466891.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
bovis ATCC 700338]
gi|304424102|gb|EFM27242.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
bovis ATCC 700338]
Length = 298
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 99/164 (60%), Gaps = 26/164 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD ++ + +SR++ I+ G V +NG+ V K + VK GD+V + + +
Sbjct: 6 KEAGIRLDKALADLTE-LSRSQANDEIKKGTVLVNGKAV-KAKYAVKVGDVVTYEVPKEE 63
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
L AE+IPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 64 VLEYTAENIPLDIIYEDADVAVVNKPQGMVVHPSVGHTSGTLVNALMYHI---------- 113
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 114 ------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAK 143
>gi|282852228|ref|ZP_06261580.1| S4 domain protein [Lactobacillus gasseri 224-1]
gi|282556647|gb|EFB62257.1| S4 domain protein [Lactobacillus gasseri 224-1]
Length = 163
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD I+ ++ +SR +++ + + +N + KVS+ V+ GD ++ T+ +PL E
Sbjct: 15 RLDKVIAEKLKDLSRTKIKELVNDKNILVNHKA-EKVSYKVQAGDSIDITVPPAKPLSLE 73
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A+++ LDIVYED +V+VVNKP MVVHP+ G+ TLVNG+L+H
Sbjct: 74 AQNLNLDIVYEDADVIVVNKPQGMVVHPSAGHPDHTLVNGLLYHTH-------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + S G RPGIVHR+DK TSGLL+VAK
Sbjct: 120 --------ELADSPEG--FRPGIVHRIDKDTSGLLMVAK 148
>gi|398818376|ref|ZP_10576968.1| pseudouridine synthase, RluA family [Brevibacillus sp. BC25]
gi|398028144|gb|EJL21668.1| pseudouridine synthase, RluA family [Brevibacillus sp. BC25]
Length = 309
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 25/167 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD R+D +I+ + + SR++VQ+ ++ G V++NG+ + K ++ ++ D V +
Sbjct: 14 VDPADKSERIDKFITLQNEDWSRSQVQAWVKEGRVTVNGEPI-KNNYKLQAEDEVTLRVP 72
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ + + E++ LDIVYED +V+VVNKP +VVHPAPG+ +GTLVNG+L HC
Sbjct: 73 PPKEMAIQPEEMSLDIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHC------- 125
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 126 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 155
>gi|335032000|ref|ZP_08525412.1| pseudouridine synthase, RluA family [Streptococcus anginosus SK52 =
DSM 20563]
gi|333768140|gb|EGL45343.1| pseudouridine synthase, RluA family [Streptococcus anginosus SK52 =
DSM 20563]
Length = 298
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V + G +RLD ++ + +SR+ I++G + +NGQV K + VK GD++ +S
Sbjct: 3 VKVEIGGVRLDKAVAD-LTPLSRSHANEQIKNGQILVNGQV-KKAKYAVKAGDVITYELS 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE++PLDIVY+D++V VVNK MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEALEYVAENLPLDIVYQDEDVAVVNKAQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|417848519|ref|ZP_12494462.1| pseudouridine synthase, RluA family [Streptococcus mitis SK1073]
gi|339452553|gb|EGP65179.1| pseudouridine synthase, RluA family [Streptococcus mitis SK1073]
Length = 295
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGHVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE++PL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAENLPLEIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNSLMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|419466373|ref|ZP_14006256.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05248]
gi|379544496|gb|EHZ09640.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA05248]
Length = 295
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LTELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDVVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE++PL+I+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAENLPLEIIYQDEDVAVVNKPQGMVVHPSAGHISGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|78185708|ref|YP_378142.1| pseudouridine synthase, RluD [Synechococcus sp. CC9902]
gi|78170002|gb|ABB27099.1| ribosomal large subunit pseudouridine synthase D [Synechococcus sp.
CC9902]
Length = 339
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 104/199 (52%), Gaps = 34/199 (17%)
Query: 41 SSSSGGNNREPIANYAGV--------QLEETVDTKAGKLRLDAWISSRIDGISRARVQSS 92
+SS G R P+ +L K +RLD W+ S+ SRAR+Q
Sbjct: 2 TSSEQGQGRPPLPEEVFTHTFGEGEGELVTLTYPKPLPMRLDRWLVSQRTEQSRARIQKF 61
Query: 93 IRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL-RAEAEDIPLDIVYEDDNVLVVNK 151
I +G V +NG+ K ++ GD V + +PL + + + LD+++ED++++V+NK
Sbjct: 62 IDAGYVRVNGKQ-GKAKTPLREGDQVQLWMPPPEPLPYLKPQPMDLDVLFEDEHIIVLNK 120
Query: 152 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 211
A + VHPAPGN GTLVNG+LHHC P L ISG +R
Sbjct: 121 SAGLTVHPAPGNKDGTLVNGLLHHC--PDL---------------------PGISG-KLR 156
Query: 212 PGIVHRLDKGTSGLLVVAK 230
PGIVHRLDK TSG +VVAK
Sbjct: 157 PGIVHRLDKDTSGCIVVAK 175
>gi|161502239|ref|YP_001569351.1| hypothetical protein SARI_00264 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160863586|gb|ABX20209.1| hypothetical protein SARI_00264 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 318
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I + V +NGQ+ K V GG+
Sbjct: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGER 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + +R EA+DIPLDIVYEDD++LV+NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHY-- 122
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 123 YPPIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|357008383|ref|ZP_09073382.1| YlyB [Paenibacillus elgii B69]
Length = 317
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 26/173 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+ E T + + R+D +I+ ++ +SR +VQ I+ G V + G+ V K ++ + GD
Sbjct: 14 RFEWTAEPEDAGERIDKFITEALEEEVSRTQVQQWIKDGCVKVGGRAV-KPNYKLSEGDA 72
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
+ + E + L E I LD+VYED +V+VVNKP MVVHPAPG+ +GTLVN +L+HC
Sbjct: 73 MTLVMPEPEELVLTPEPIALDVVYEDSDVIVVNKPRGMVVHPAPGHYSGTLVNALLYHC- 131
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHR+DK TSGLL+ AK
Sbjct: 132 ---------------KDL-------SGINGV-IRPGIVHRIDKDTSGLLMAAK 161
>gi|403667693|ref|ZP_10932993.1| RNA pseudouridine synthase ylyB [Kurthia sp. JC8E]
Length = 307
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 100/159 (62%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D I++ SR ++Q + G VS+N +VV+K VK D++ T E +PL
Sbjct: 17 RIDKAIATMQTEWSRTQIQGFVEGGHVSVNKEVVAKKY-KVKVEDVILVTPPEPEPLEIL 75
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AED+ L+IVYED++VLVVNKP MVVHPAPG+ATGTLVNG++ HC+
Sbjct: 76 AEDLQLEIVYEDEDVLVVNKPKGMVVHPAPGHATGTLVNGLMFHCN-------------- 121
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 122 --DL-------SGINGV-VRPGIVHRIDKDTSGLLMVAK 150
>gi|332799431|ref|YP_004460930.1| RluA family pseudouridine synthase [Tepidanaerobacter acetatoxydans
Re1]
gi|332697166|gb|AEE91623.1| pseudouridine synthase, RluA family [Tepidanaerobacter
acetatoxydans Re1]
Length = 308
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 28/169 (16%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
TV K RLD +++ ++ SR+ ++ I G + +NG +V K ++ ++ D + T+
Sbjct: 8 TVTRDDEKKRLDIFLADKLQD-SRSFLKKGIVEGWIKVNGSIV-KPNYRLRQEDQIIVTV 65
Query: 123 SE-LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
+ LQPL + EDIPLDI++ED +++V+NKP MVV+PAPGN +GTL+N +L+H
Sbjct: 66 PQALQPL-IDPEDIPLDIIFEDRDIVVINKPRGMVVYPAPGNYSGTLINALLNHTK---- 120
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S G ++RPGIVHRLDK TSG++VVAK
Sbjct: 121 --------------------DLSARGGTMRPGIVHRLDKDTSGVIVVAK 149
>gi|317131689|ref|YP_004091003.1| RluA family pseudouridine synthase [Ethanoligenens harbinense
YUAN-3]
gi|315469668|gb|ADU26272.1| pseudouridine synthase, RluA family [Ethanoligenens harbinense
YUAN-3]
Length = 302
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 25/164 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
+AG+ RLD ++ +R+ +Q + GLV++NG+ K ++ GD + +
Sbjct: 12 QAGE-RLDRALARLCPDQTRSGLQKLLECGLVTLNGKPAGK-HDRMRAGDEIVVEFPDPV 69
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
PL A+A+DIP+++VYEDD++LVVNKP MVVHP GN GTLVN +L HC
Sbjct: 70 PLEAKAQDIPIEVVYEDDDLLVVNKPQGMVVHPGAGNPDGTLVNALLFHCG--------- 120
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S S G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 --------------DSLSGIGGVLRPGIVHRIDKDTSGLLMVAK 150
>gi|295109999|emb|CBL23952.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
obeum A2-162]
Length = 304
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 24/171 (14%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
LE VD A +R+D +++ + SR+ +Q ++ V +NG+V+ K ++ + GD +
Sbjct: 4 LEFNVDASANNIRIDRYLADQCPEHSRSYIQKLLKEEQVLVNGRVI-KANYKTQSGDYIE 62
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
I + + E+IPLDI+YEDD VLVVNKP MVVHP+ G+ +GTLVN ++ HC
Sbjct: 63 FHIPDPEVPDILPENIPLDILYEDDYVLVVNKPKDMVVHPSAGHTSGTLVNAVMAHCG-- 120
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E S I+G +RPGIVHR+DK T+G L++ K
Sbjct: 121 --------------------EHLSGINGV-LRPGIVHRIDKDTTGALLICK 150
>gi|419779021|ref|ZP_14304902.1| pseudouridine synthase, RluA family [Streptococcus oralis SK10]
gi|383186785|gb|EIC79250.1| pseudouridine synthase, RluA family [Streptococcus oralis SK10]
Length = 299
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 99/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G RLD +S + +SR+ I++G V +NGQ K + V+ GD++ +
Sbjct: 3 IKIETGGQRLDKALSD-LTELSRSLANEQIKAGQVLVNGQA-KKAKYTVQEGDIITYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AEDIPLDI+Y+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDIPLDIIYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|431071442|ref|ZP_19494413.1| RluA family pseudouridine synthase [Enterococcus faecium E1604]
gi|431104314|ref|ZP_19497038.1| RluA family pseudouridine synthase [Enterococcus faecium E1613]
gi|431582302|ref|ZP_19520251.1| RluA family pseudouridine synthase [Enterococcus faecium E1861]
gi|431740225|ref|ZP_19529142.1| RluA family pseudouridine synthase [Enterococcus faecium E2039]
gi|430567075|gb|ELB06161.1| RluA family pseudouridine synthase [Enterococcus faecium E1604]
gi|430569902|gb|ELB08881.1| RluA family pseudouridine synthase [Enterococcus faecium E1613]
gi|430594192|gb|ELB32162.1| RluA family pseudouridine synthase [Enterococcus faecium E1861]
gi|430603761|gb|ELB41274.1| RluA family pseudouridine synthase [Enterococcus faecium E2039]
Length = 303
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q ++ VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIRHESG--RIDKVLTNLFSDYSRSQIQLWLKERAVSVNGQPV-KANYKVKQGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|335036873|ref|ZP_08530188.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
ATCC 31749]
gi|333791697|gb|EGL63079.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
ATCC 31749]
Length = 340
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
R+D W+ + +SR+R+++ I G V +NGQ V++ V GD + + E +
Sbjct: 24 RIDVWLVGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRIEIVMPEPEDPVP 83
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
+ EDIPLD+ YED++++V+ KPA +VVHP GN TGTLVN +++HC
Sbjct: 84 QGEDIPLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCG------------- 130
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ S I G RPGIVHRLDK TSG++VVAK
Sbjct: 131 ---------DSLSGIGGVK-RPGIVHRLDKETSGVMVVAK 160
>gi|293376242|ref|ZP_06622485.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325845167|ref|ZP_08168476.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
gi|292645134|gb|EFF63201.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325488832|gb|EGC91232.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
Length = 302
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 25/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++ + SR+ +Q I+ G V INGQV +K ++ + D + I E + L
Sbjct: 15 VRLDKVLNESFEDYSRSYLQQLIKEGRVLINGQV-AKANYKCRLNDQIEINIPEPEVLDV 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E++ LDIVY+DD V+VVNKP +MVVHPAPG+ +GTLVNG++ +
Sbjct: 74 IPEEMDLDIVYQDDYVIVVNKPENMVVHPAPGSMSGTLVNGLM----------------A 117
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 118 QVTDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAK 149
>gi|418962916|ref|ZP_13514765.1| pseudouridine synthase, RluA family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383344892|gb|EID23042.1| pseudouridine synthase, RluA family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 298
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
V + G +RLD ++ + +SR+ I++G + +NGQV K + VK GD++ +S
Sbjct: 3 VKVEIGGVRLDKAVAD-LTPLSRSHANEQIKNGQILVNGQV-KKAKYAVKAGDVITYELS 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AE++PLDIVY+D++V VVNK MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEALEYVAENLPLDIVYQDEDVAVVNKAQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|418182557|ref|ZP_12819118.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43380]
gi|353850794|gb|EHE30798.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA43380]
Length = 295
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 100/167 (59%), Gaps = 26/167 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
+ + G LRLD +S + +SR+ I+SG V +NGQV K + V+ GD+V +
Sbjct: 3 IKIETGGLRLDKALSD-LSELSRSLANEQIKSGQVLVNGQV-KKAKYTVQEGDIVTYHVP 60
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
E + L AED+ L+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 61 EPEVLEYVAEDLSLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI------- 113
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 114 ---------KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 143
>gi|425054142|ref|ZP_18457657.1| pseudouridine synthase, RluA family [Enterococcus faecium 505]
gi|403036667|gb|EJY48010.1| pseudouridine synthase, RluA family [Enterococcus faecium 505]
Length = 303
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q ++ VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIRHESG--RIDKVLTNLFSDYSRSQIQLWLKERAVSVNGQPV-KANYKVKQGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|402574180|ref|YP_006623523.1| ribosomal large subunit pseudouridine synthase D [Desulfosporosinus
meridiei DSM 13257]
gi|402255377|gb|AFQ45652.1| ribosomal large subunit pseudouridine synthase D [Desulfosporosinus
meridiei DSM 13257]
Length = 323
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 26/167 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD ++ ++ SR+ VQ I V +NG + K ++ ++ GD+V TI + A
Sbjct: 37 VRLDLGVTEVLEK-SRSFVQGLITKEWVLVNG-LARKSNYKIRQGDLVKVTIPAPRESSA 94
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E+IPL+I+Y+D++VLVVNKP MVVHPAPG TGT+VN +L+HC
Sbjct: 95 TPENIPLEIIYQDEDVLVVNKPQGMVVHPAPGAWTGTMVNALLYHC-------------- 140
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFG 237
+ S I+G +RPGIVHR+DK TSG+LVVAK FS G
Sbjct: 141 ---------DNLSGINGV-LRPGIVHRIDKDTSGILVVAKNDFSHQG 177
>gi|343498449|ref|ZP_08736485.1| 23S rRNA pseudouridine synthase D [Vibrio tubiashii ATCC 19109]
gi|418477076|ref|ZP_13046212.1| 23S rRNA pseudouridine synthase D [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342824421|gb|EGU58966.1| 23S rRNA pseudouridine synthase D [Vibrio tubiashii ATCC 19109]
gi|384575271|gb|EIF05722.1| 23S rRNA pseudouridine synthase D [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 326
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 29/176 (16%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L TV D++ G+ RLD I+ SR+R++ + +G V +NG+V++K V GG+
Sbjct: 5 IELTNTVKDSQLGQ-RLDQAIAELFADFSRSRLKEWLLNGKVQVNGEVITKPRTKVMGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
+ R EA+DIPLDIVYEDD+++V+NKP VVHP G GT++N +LHH
Sbjct: 64 EITLQAELEDEERWEAQDIPLDIVYEDDDIMVINKPRGFVVHPGAGTPDGTVLNALLHH- 122
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
+ D ++ R GIVHRLDK T+GL+VVAK +
Sbjct: 123 ------------YPDIAEVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|386362494|ref|YP_006071825.1| pseudouridine synthase, RluA family protein [Streptococcus pyogenes
Alab49]
gi|350276903|gb|AEQ24271.1| pseudouridine synthase, RluA family protein [Streptococcus pyogenes
Alab49]
Length = 296
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ + +SR + I+ GLV +NGQ K + V+ GD++ + + + L +
Sbjct: 11 RLDKALAD-LSPLSRGQANDQIKQGLVLVNGQQ-KKAKYTVQAGDVICFELPKEEVLEYQ 68
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A+DIPLDI+YEDD + ++NKP MVVHP+ G+ +GT+VN +++H
Sbjct: 69 AQDIPLDIIYEDDALAIINKPQGMVVHPSAGHPSGTMVNALMYHI--------------- 113
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 -KDL-------SSINGV-VRPGIVHRIDKDTSGLLMVAK 143
>gi|257898611|ref|ZP_05678264.1| pseudouridylate synthase [Enterococcus faecium Com15]
gi|431429735|ref|ZP_19512837.1| RluA family pseudouridine synthase [Enterococcus faecium E1630]
gi|431759107|ref|ZP_19547723.1| RluA family pseudouridine synthase [Enterococcus faecium E3346]
gi|257836523|gb|EEV61597.1| pseudouridylate synthase [Enterococcus faecium Com15]
gi|430587969|gb|ELB26180.1| RluA family pseudouridine synthase [Enterococcus faecium E1630]
gi|430626554|gb|ELB63125.1| RluA family pseudouridine synthase [Enterococcus faecium E3346]
Length = 303
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 27/172 (15%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
+L+ T+ ++G R+D +++ SR+++Q ++ VS+NGQ V K ++ VK GD +
Sbjct: 3 ELKTTIRHESG--RIDKVLTNLFSDYSRSQIQLWLKERAVSVNGQPV-KANYKVKQGDEI 59
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
I E + L E+IPL IVYED++V V+NKP MVVHP+ G+ GT+VN +++H
Sbjct: 60 TVLIPEPETLDVVPENIPLTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHI-- 117
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S+I+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 118 --------------KDL-------STINGV-IRPGIVHRIDKDTSGLLMVAK 147
>gi|113475517|ref|YP_721578.1| ribosomal large subunit pseudouridine synthase D [Trichodesmium
erythraeum IMS101]
gi|110166565|gb|ABG51105.1| ribosomal large subunit pseudouridine synthase D [Trichodesmium
erythraeum IMS101]
Length = 316
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 90/159 (56%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD W+S ++ +SR+ +Q I G V +N Q+ + V GD + I PL E
Sbjct: 20 RLDIWLSQQMLELSRSHIQKLISQGNVKVNDQLCTSKKAIVHQGDKIILVIPPPIPLAIE 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
A DIPLDI+YEDD +L++NKPA +VVHPAPG++ GTLVN +L HC
Sbjct: 80 ANDIPLDILYEDDALLIINKPAGLVVHPAPGHSEGTLVNALLAHCD-------------- 125
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S + G RPGIVHRLDK T+G ++VAK
Sbjct: 126 ----------SLAGIGGVQRPGIVHRLDKDTTGAIMVAK 154
>gi|188585950|ref|YP_001917495.1| RluA family pseudouridine synthase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350637|gb|ACB84907.1| pseudouridine synthase, RluA family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 328
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 94/161 (58%), Gaps = 26/161 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ-PLR 129
LRLD ++S +I+ +SR++ + I + V +N V K S+++ GD+V +Q +
Sbjct: 25 LRLDLYLSEQIEDLSRSKAKMLINNNSVMVNDNWV-KASYSITSGDVVKVDTQLIQSEIT 83
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
+ IPLDIVYED+ +LVVNKP +MVVHP GN T+VN +L+HC
Sbjct: 84 LIPQSIPLDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTMVNALLYHC------------- 130
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+++SD + RPGIVHRLDK TSGLLVVAK
Sbjct: 131 ---QNLSDGTSYE--------RPGIVHRLDKDTSGLLVVAK 160
>gi|15643228|ref|NP_228272.1| hypothetical protein TM0462 [Thermotoga maritima MSB8]
gi|4980971|gb|AAD35547.1|AE001724_5 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 311
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 27/173 (15%)
Query: 64 VDTKAGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
V+ + RLD ++ + ISR+ +Q +I+ G V +NGQ+ K S+ +K G++V +
Sbjct: 6 VEKREEGWRLDQFLKEKTPSWISRSMIQKAIKEGKVKVNGQI-KKPSYKLKEGEIVEVDL 64
Query: 123 SEL-QPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 181
E Q + E+I L ++YED +++V++KP M+VHP P +GTLVN +LHHC
Sbjct: 65 PEKPQEATVQPEEIELKVLYEDRDIIVIDKPGDMIVHPVPSKLSGTLVNALLHHC----- 119
Query: 182 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
D + + G +RPGIVHRLDK TSG++VVAK F+
Sbjct: 120 --------KDLQGV-----------GGKLRPGIVHRLDKETSGVIVVAKNDFA 153
>gi|401565108|ref|ZP_10805963.1| pseudouridine synthase, RluA family [Selenomonas sp. FOBRC6]
gi|400188141|gb|EJO22315.1| pseudouridine synthase, RluA family [Selenomonas sp. FOBRC6]
Length = 302
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 101/169 (59%), Gaps = 28/169 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD + + +SR+ Q I +G V+++G V K ++ ++GG+ + CT+ + +
Sbjct: 13 RLDRALVVHMPDLSRSYAQRLIETGQVTVDG-VARKGNYKLRGGEEIACTVPPAEEVEIR 71
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE IPLD++YED++++V+NK MVVHPA G GTLVN +L+HC
Sbjct: 72 AEQIPLDVLYEDEDMIVLNKVRGMVVHPAAGIVRGTLVNALLYHC--------------- 116
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFGNHF 240
+D+ S I+GA +RPGIVHRLDK TSG++VVAK + +HF
Sbjct: 117 -KDL-------SGINGA-LRPGIVHRLDKDTSGVMVVAK---NDMAHHF 153
>gi|50365205|ref|YP_053630.1| 23S rRNA/tRNA pseudouridine synthase [Mesoplasma florum L1]
gi|50363761|gb|AAT75746.1| 23S rRNA/tRNA pseudouridine synthase [Mesoplasma florum L1]
Length = 311
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 92/164 (56%), Gaps = 26/164 (15%)
Query: 70 KLRLDAWISSRI---DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K+RLD ++ + SR+ +Q+ I+ G V +NG V +K + N+ G + I E++
Sbjct: 9 KVRLDKYLVDALAESTEYSRSYIQTLIKDGNVIVNGNVETKQNFNLIGDIEIEINIPEVK 68
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
E I LDIVYEDD++LVVNKP +MVVHP GN GT+VN +L
Sbjct: 69 TSTINPEKIDLDIVYEDDDILVVNKPNNMVVHPGAGNTEGTMVNALL------------- 115
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D EF S+I G RPGIVHR+DK T+GLL+VAK
Sbjct: 116 ---------GRDAEFLSTIGGVE-RPGIVHRIDKQTTGLLIVAK 149
>gi|407700659|ref|YP_006825446.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'Black Sea 11']
gi|407249806|gb|AFT78991.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'Black Sea 11']
Length = 327
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 103/183 (56%), Gaps = 29/183 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+QLE + + LRLD ++ SR+++++ I+ G VS+NG+V++ H ++ ++
Sbjct: 8 IQLEASTEAAHFGLRLDQVLADLFPEYSRSKLKTWIQEGNVSVNGEVITVPRHKMQMDEL 67
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + +EA+DI L+IVYED+++LV+NKPA +VVHP GN +GT++N +L+HC
Sbjct: 68 VTVQAEMDVQVTSEAQDIALNIVYEDEHILVINKPADLVVHPGAGNPSGTVLNALLNHC- 126
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFSPFG 237
D + + R GIVHRLDK T+GL+VVAK I P
Sbjct: 127 ------------PDIDKVP--------------RAGIVHRLDKDTTGLMVVAKTI--PAQ 158
Query: 238 NHF 240
H
Sbjct: 159 THL 161
>gi|407718127|ref|YP_006795532.1| 23S RNA-specific pseudouridylate synthase [Leuconostoc carnosum
JB16]
gi|407241883|gb|AFT81533.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc carnosum
JB16]
Length = 304
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 26/168 (15%)
Query: 63 TVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122
T++ K + RLDA ++ SR + I+ G V +N + V + S+ V GD V T
Sbjct: 6 TINIKEQQGRLDAILAKEDIPYSRTVLADWIQDGTVLVNQKKVKR-SYKVVSGDTVTLTP 64
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
E+Q AEDIPL IVYED++++VVNKP MVVHPA G+ +GTLVN +L+H L
Sbjct: 65 PEVQNTAIVAEDIPLSIVYEDNDLIVVNKPQGMVVHPAAGHTSGTLVNALLYHAPL---- 120
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S+I+G RPGIVHR+D+ TSGLL+VAK
Sbjct: 121 --------------------STING-EFRPGIVHRIDRDTSGLLMVAK 147
>gi|213961970|ref|ZP_03390235.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
sputigena Capno]
gi|213955323|gb|EEB66640.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
sputigena Capno]
Length = 350
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 35/179 (19%)
Query: 59 QLEETVDTKAGK----LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKG 114
+L E AGK LR+D ++ + ++ +R +VQ + + G + +NG+ V K +H VK
Sbjct: 21 ELYEHYSFTAGKGQEPLRVDKFLMNFVENATRNKVQQAAKQGNIFVNGEPV-KANHRVKA 79
Query: 115 GDMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171
D+V +S P + E+IPL+IVYEDD +LVVNKPA MVVHP GN +GTL+N
Sbjct: 80 NDVVKVLLS--HPPHEDLLVPENIPLNIVYEDDALLVVNKPAGMVVHPGHGNYSGTLINA 137
Query: 172 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+++H F + +S RPG+VHR+DK TSGLLV+AK
Sbjct: 138 LVYH-------------------------FEHLPNNSSNRPGLVHRIDKDTSGLLVIAK 171
>gi|83949443|ref|ZP_00958176.1| ribosomal large subunit pseudouridine synthase D [Roseovarius
nubinhibens ISM]
gi|83837342|gb|EAP76638.1| ribosomal large subunit pseudouridine synthase D [Roseovarius
nubinhibens ISM]
Length = 341
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 87/162 (53%), Gaps = 26/162 (16%)
Query: 72 RLDAWISSRID---GISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL 128
RLD +S + +SR R+ + G VS+NG V V GD V T+ +
Sbjct: 17 RLDKALSRDVPEEAHLSRTRLARLVEEGAVSVNGAEARDVKSRVAEGDEVVITVPVAEES 76
Query: 129 RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E+IPLDIVYED ++LVVNKPA MVVHPAPG GTLVN +LHHC
Sbjct: 77 DILPENIPLDIVYEDADLLVVNKPAGMVVHPAPGTPRGTLVNALLHHCG----------- 125
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+S G RPGIVHR+DK TSGLLVVAK
Sbjct: 126 ----GDLSG--------VGGVRRPGIVHRIDKDTSGLLVVAK 155
>gi|116629656|ref|YP_814828.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus gasseri
ATCC 33323]
gi|238854259|ref|ZP_04644603.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri 202-4]
gi|311110701|ref|ZP_07712098.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri MV-22]
gi|420147157|ref|ZP_14654433.1| Pseudouridine synthase [Lactobacillus gasseri CECT 5714]
gi|116095238|gb|ABJ60390.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri ATCC 33323]
gi|238833070|gb|EEQ25363.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri 202-4]
gi|311065855|gb|EFQ46195.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri MV-22]
gi|398401158|gb|EJN54660.1| Pseudouridine synthase [Lactobacillus gasseri CECT 5714]
Length = 304
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 25/161 (15%)
Query: 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR 129
K RLD I+ ++ +SR +++ + + +N + KVS+ V+ GD ++ T+ +PL
Sbjct: 13 KGRLDKVIAEKLKDLSRTKIKELVNDKNILVNHKA-EKVSYKVQAGDSIDITVPPAKPLS 71
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
EA+++ LDIVYED +V+VVNKP MVVHP+ G+ TLVNG+L+H
Sbjct: 72 LEAQNLNLDIVYEDADVIVVNKPQGMVVHPSAGHPDHTLVNGLLYHT------------- 118
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
E + S G RPGIVHR+DK TSGLL+VAK
Sbjct: 119 ---------HELADSPEG--FRPGIVHRIDKDTSGLLMVAK 148
>gi|332879773|ref|ZP_08447463.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332682292|gb|EGJ55199.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 353
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 100/178 (56%), Gaps = 35/178 (19%)
Query: 60 LEETVDTKAGK----LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115
+ E KAGK LR+D ++ + ++ +R +VQ + + G + +NGQ V K +H VK
Sbjct: 27 MYEHYSFKAGKGQEPLRVDKFLMNFVENATRNKVQQAAKQGNIFVNGQPV-KSNHRVKAN 85
Query: 116 DMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
D V + P + E+IPL IVYEDD++LVVNKPA MVVHP GN +GTL+N +
Sbjct: 86 DEVKVYFA--HPPHEDLLIPENIPLQIVYEDDSLLVVNKPAGMVVHPGHGNYSGTLINAL 143
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++H F + + +S RPG+VHR+DK TSGLLV+AK
Sbjct: 144 VYH-------------------------FENLPNNSSNRPGLVHRIDKDTSGLLVIAK 176
>gi|410462720|ref|ZP_11316282.1| dephospho-CoA kinase [Desulfovibrio magneticus str. Maddingley
MBC34]
gi|409984172|gb|EKO40499.1| dephospho-CoA kinase [Desulfovibrio magneticus str. Maddingley
MBC34]
Length = 570
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 28/169 (16%)
Query: 63 TVDTKAGKLRLDAWISSRI--DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
T A RLDA+ S+R+ +SR +V+++I +GLV ++G++ K ++GG+ +
Sbjct: 34 TAVVDAAGTRLDAFWSARLADKDVSRGKVRAAIEAGLVLVDGEICRKPGLKLRGGETLTL 93
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
T+ E P A+AED L ++Y D +VLV+NKPA + +HPAP GTLVN +LHH
Sbjct: 94 TLPE-TPSEAKAEDGDLKLLYLDGDVLVLNKPAGLTIHPAPSQPEGTLVNRLLHH----- 147
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 229
F D ++ D RPGIVHRLDK TSGLL+VA
Sbjct: 148 --------FPDMRAMAGD------------RPGIVHRLDKDTSGLLLVA 176
>gi|168186171|ref|ZP_02620806.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
gi|169295643|gb|EDS77776.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
Length = 304
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +IS + SR+ Q I V +N K ++ +K GD V I E + + +
Sbjct: 16 RLDVFISKCFEEKSRSYAQKLIEEKNVFVNNSS-KKSNYKLKIGDYVEIKIKEDEKINIK 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDI L+I+YED++V+V++KP MVVHP GN +GTLVNG+L+HC
Sbjct: 75 PEDIKLNIIYEDEDVIVIDKPQGMVVHPGAGNYSGTLVNGLLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ SSI+G +RPGIVHR+DK TSG+LVVAK
Sbjct: 120 --------DSLSSING-DVRPGIVHRIDKDTSGVLVVAK 149
>gi|261405686|ref|YP_003241927.1| RluA family pseudouridine synthase [Paenibacillus sp. Y412MC10]
gi|261282149|gb|ACX64120.1| pseudouridine synthase, RluA family [Paenibacillus sp. Y412MC10]
Length = 324
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 102/171 (59%), Gaps = 26/171 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRI-DGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
E TVD A K R+D +++ + + +SR++VQ I G VS+N + K ++ V GD +
Sbjct: 25 EWTVDADAAKTRIDKYLTENLGEDVSRSQVQLWIADGHVSVNDGPI-KSNYKVSQGDRIV 83
Query: 120 CTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLP 179
+ E + EDIPL+I +ED +V+VVNKP MVVHPAPG+++GTLVN ++ HC
Sbjct: 84 LKVPEPSAVEIIPEDIPLEIAFEDGDVIVVNKPRGMVVHPAPGHSSGTLVNALMFHC--- 140
Query: 180 TLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK T+GL++ AK
Sbjct: 141 -------------KDL-------SGING-ELRPGIVHRIDKDTTGLIMAAK 170
>gi|322514978|ref|ZP_08067990.1| ribosomal large subunit pseudouridine synthase D [Actinobacillus
ureae ATCC 25976]
gi|322119031|gb|EFX91195.1| ribosomal large subunit pseudouridine synthase D [Actinobacillus
ureae ATCC 25976]
Length = 325
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 90/161 (55%), Gaps = 27/161 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ SR+R++ I S LV +NG +V+K V GG+++ + +R E
Sbjct: 19 RLDQALAQLFPYYSRSRLKVWIESDLVKVNGNIVNKAREKVFGGELIEVQAEIEEEVRFE 78
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
+DIPL+IVYEDD++LV+NKP +VVHP GN GT++N +LH+ P +A
Sbjct: 79 PQDIPLNIVYEDDDILVINKPKDLVVHPGAGNPDGTVLNALLHYY--PPIAEVP------ 130
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK T+GL+VVAK I
Sbjct: 131 -------------------RAGIVHRLDKDTTGLMVVAKNI 152
>gi|225850427|ref|YP_002730661.1| ribosomal large subunit pseudouridine synthase, RluA family
[Persephonella marina EX-H1]
gi|225645814|gb|ACO04000.1| ribosomal large subunit pseudouridine synthase, RluA family
[Persephonella marina EX-H1]
Length = 319
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 24/171 (14%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123
VD + + RLD ++SS SR+ Q I+ G V +G+ + K S+ V+ G + I
Sbjct: 12 VDEEYDRKRLDQFLSSVYPEYSRSYFQKLIKDGYVFEDGKDIKKPSYKVRKGQEITLVIP 71
Query: 124 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 183
+ L + E+IP+DI++ED+++ VV KPA MVVHP+PG+ +GTLVN +L+H
Sbjct: 72 PPETLEIKPENIPVDILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNALLYHFR------ 125
Query: 184 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+IS+ G R GIVHRLDK T+GL+++AK F+
Sbjct: 126 ----------NISE--------YGGKERAGIVHRLDKDTAGLMIIAKSEFA 158
>gi|194334247|ref|YP_002016107.1| RluA family pseudouridine synthase [Prosthecochloris aestuarii DSM
271]
gi|194312065|gb|ACF46460.1| pseudouridine synthase, RluA family [Prosthecochloris aestuarii DSM
271]
Length = 347
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ +R +VQ +I V +NG+ + K ++ +K D + T L+P
Sbjct: 34 MRIDVYLAQQVENATRNKVQEAIAEHRVLVNGKTI-KSNYRIKSLDSIEVTF--LRPPAP 90
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+DI+YED++++VVNK + MVVHPA GN TGTL N ILHH +EA
Sbjct: 91 ELAPEDIPIDIIYEDEDLMVVNKASDMVVHPAFGNWTGTLANAILHHIG--------KEA 142
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+ + +RPGIVHRLDK TSGL+++AK
Sbjct: 143 --------------GDLDCSDMRPGIVHRLDKNTSGLIIIAK 170
>gi|374338180|ref|YP_005094891.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
macedonicus ACA-DC 198]
gi|372284291|emb|CCF02556.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
macedonicus ACA-DC 198]
Length = 298
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 100/164 (60%), Gaps = 26/164 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
K +RLD ++ + +SR++ I+ G V +NG+ V K ++VK GD+V + + +
Sbjct: 6 KEAGVRLDKALADLTE-LSRSQANDEIKKGTVLVNGKAV-KAKYSVKVGDVVTYEVPKEE 63
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
L AE+IPLDI+YEDD+V VVNK MVVHP+ G+ +GTLVN +++H
Sbjct: 64 VLEYTAENIPLDIIYEDDDVAVVNKLQGMVVHPSVGHTSGTLVNALMYHI---------- 113
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ SSI+G IRPGIVHR+DK TSGLL++AK
Sbjct: 114 ------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAK 143
>gi|375084575|ref|ZP_09731438.1| RluA family pseudouridine synthase [Megamonas funiformis YIT 11815]
gi|374568023|gb|EHR39218.1| RluA family pseudouridine synthase [Megamonas funiformis YIT 11815]
Length = 304
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 24/163 (14%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ + D SRA +Q I G +++N +V + ++ +K D + + +
Sbjct: 14 RLDVFLAGQEDNPSRASIQKMITDGAITVNNEV-KRANYKLKANDQITMVFEPPTEIEVK 72
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IPLDI+YED++++V+NK MVVHPA G +GTLVN +L+HC
Sbjct: 73 PENIPLDILYEDNDIIVINKARGMVVHPAAGVYSGTLVNALLYHCH-------------- 118
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
DE S I+G IRPGIVHRLDK TSG++VVAK F+
Sbjct: 119 ------DE--LSGING-KIRPGIVHRLDKDTSGVMVVAKNDFA 152
>gi|422882191|ref|ZP_16928647.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK355]
gi|332360785|gb|EGJ38592.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK355]
Length = 298
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ D +SR+ I+ G + +NGQ K + VK GD+V+ +SE + +
Sbjct: 13 RLDKAVAELTD-LSRSLANEQIKDGQILVNGQA-KKAKYAVKEGDVVSYELSEPEVVEYV 70
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AEDIPL+IVY+D++V VVNKP MVVHP+ G+ +GTLVN +++H
Sbjct: 71 AEDIPLEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI--------------- 115
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G +RPGIVHR+DK TSGLL++AK
Sbjct: 116 -KDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAK 145
>gi|253577879|ref|ZP_04855151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850197|gb|EES78155.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 304
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 97/160 (60%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D ++S + +SR+ +Q ++ +++NG V K ++ V+ GD ++ + +++
Sbjct: 15 IRIDRYLSEMNEELSRSYIQKLLKEQKITVNGSAV-KANYKVQEGDEISVAVPDIKEPDI 73
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
EDIPLDI+YEDD+VL+VNKP MVVHP+ G+ +GTLVN I+ HC
Sbjct: 74 LPEDIPLDILYEDDDVLIVNKPKGMVVHPSAGHTSGTLVNAIMFHC-------------- 119
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ S I+G +RPGIVHR+DK T+G L+V K
Sbjct: 120 --------KDNLSGINGV-LRPGIVHRIDKDTTGALLVCK 150
>gi|255659722|ref|ZP_05405131.1| ribosomal large subunit pseudouridine synthase D [Mitsuokella
multacida DSM 20544]
gi|260848296|gb|EEX68303.1| ribosomal large subunit pseudouridine synthase D [Mitsuokella
multacida DSM 20544]
Length = 308
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 25/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ +SRA VQ I G ++G+V K ++ ++ G+ V + E +P+
Sbjct: 16 RLDRFLTRMEPTLSRAHVQKVIAEGQALVSGRV-RKANYKLQAGEKVTFHLPEAKPVEIL 74
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
EDIPLDI+YED +++V+NK MVVHPA G TGTLVN +L+HC
Sbjct: 75 PEDIPLDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHC--------------- 119
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
+D+ S I+G IRPGIVHRLDK TSG++V AK
Sbjct: 120 -KDL-------SGING-EIRPGIVHRLDKDTSGVMVAAK 149
>gi|341820394|emb|CCC56664.1| pseudouridylate synthase [Weissella thailandensis fsh4-2]
Length = 304
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 26/170 (15%)
Query: 61 EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120
EE++ K RLD ++ +R +V I G++++N + K ++ V+ D+++
Sbjct: 3 EESLTITDQKGRLDKVVADAFTEYTRTQVSKWIDEGVLTVNKEN-KKPNYKVRPDDVISF 61
Query: 121 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180
+ E L + E++PLDIVYEDD++LVVNKP MVVHPA G+ GTLVN +++H L
Sbjct: 62 VVPEPVTLDLKPENLPLDIVYEDDDLLVVNKPQGMVVHPAAGHPNGTLVNALMYHTDL-- 119
Query: 181 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
SSI+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 120 ----------------------SSINGV-VRPGIVHRIDKDTSGLLMVAK 146
>gi|357058623|ref|ZP_09119471.1| hypothetical protein HMPREF9334_01188 [Selenomonas infelix ATCC
43532]
gi|355373579|gb|EHG20895.1| hypothetical protein HMPREF9334_01188 [Selenomonas infelix ATCC
43532]
Length = 303
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 98/164 (59%), Gaps = 26/164 (15%)
Query: 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQ 126
+AG+ RLD ++ R+ +SR+ Q I G V+++ K ++ ++GG+ + CT+ +
Sbjct: 10 RAGE-RLDLFLVRRLPDLSRSYAQRLIADGQVTVD-DTARKANYKLRGGEEIVCTMPPAE 67
Query: 127 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 186
+ AEDIPLDI+YED +++VVNK MVVHPA G TGTLVN +L HC
Sbjct: 68 EIEICAEDIPLDILYEDADIIVVNKARGMVVHPAAGIYTGTLVNALLWHC---------- 117
Query: 187 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+GA +RPGIVHRLDK TSG++V AK
Sbjct: 118 ------HDL-------SGINGA-LRPGIVHRLDKDTSGVMVAAK 147
>gi|149190361|ref|ZP_01868634.1| 23S rRNA pseudouridine synthase D [Vibrio shilonii AK1]
gi|148835850|gb|EDL52814.1| 23S rRNA pseudouridine synthase D [Vibrio shilonii AK1]
Length = 324
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 29/176 (16%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L TV D++ G+ RLD ++ SR+R++ + G +++NG+V++K V GG+
Sbjct: 5 IELTNTVKDSQLGQ-RLDQAVAELFADFSRSRLKEWLLDGKIAVNGEVITKPRTKVMGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++ R EA+DIPL+IVYEDD+++V+NKP VVHP G GT++N +LHH
Sbjct: 64 LITVQAELEDEERFEAQDIPLNIVYEDDDIIVINKPRDFVVHPGAGTPDGTVLNALLHH- 122
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A R GIVHRLDK T+GL+VVAK +
Sbjct: 123 -FPAIAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|418774362|ref|ZP_13330331.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418803883|ref|ZP_13359499.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392751174|gb|EJA08129.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392772231|gb|EJA28934.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
Length = 326
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I + V +NGQ+ K V GG+
Sbjct: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGER 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + +R EA+DIPLDIVYEDD++LV+NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYY- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 124 -PPIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|213420845|ref|ZP_03353911.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 278
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I + V +NGQ+ K V GG+
Sbjct: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGER 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + +R EA+DIPLDIVYEDD++LV+NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYY- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 124 -PPIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>gi|292487319|ref|YP_003530191.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
CFBP1430]
gi|292900315|ref|YP_003539684.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
ATCC 49946]
gi|428784251|ref|ZP_19001743.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
ACW56400]
gi|291200163|emb|CBJ47289.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
ATCC 49946]
gi|291552738|emb|CBA19783.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
CFBP1430]
gi|426277390|gb|EKV55116.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
ACW56400]
Length = 325
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 27/177 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
V+L TV RLD ++ SR+R++ I + +++NG + K V GG+
Sbjct: 5 VKLNATVAESQLGQRLDQALAELFPDYSRSRIKEWILNRRITVNGTTIDKPKEKVLGGEQ 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
++ + R EA+DIPLDIVYEDD++LV+NKP +VVHP GN GT++N +LHH
Sbjct: 65 ISIDAEIEEEARWEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHH-- 122
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
P +A D+ R GIVHRLDK T+GL+VVAK + S
Sbjct: 123 FPAIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTVPS 154
>gi|116072001|ref|ZP_01469269.1| Pseudouridine synthase, RluD [Synechococcus sp. BL107]
gi|116065624|gb|EAU71382.1| Pseudouridine synthase, RluD [Synechococcus sp. BL107]
Length = 339
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 104/201 (51%), Gaps = 38/201 (18%)
Query: 41 SSSSGGNNREPIANYAGV--------QLEETVDTKAGKLRLDAWISSRIDGISRARVQSS 92
+SS G R P+ +L K +RLD W+ S+ SRAR+Q
Sbjct: 2 TSSEQGQGRPPLPEEVFTHTFGEGEGELVTLTYPKPLPMRLDRWLVSQRTEQSRARIQKF 61
Query: 93 IRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL---RAEAEDIPLDIVYEDDNVLVV 149
I +G V +NG+ K ++ GD V + +PL R + D LD+++ED++++V+
Sbjct: 62 IDAGYVRVNGKQ-GKAKTPLREGDQVQLWMPPPEPLPYLRPQPMD--LDVLFEDEHIIVL 118
Query: 150 NKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS 209
NK A + VHPAPGN GTLVNG+LHHC P L ISG
Sbjct: 119 NKSAGLTVHPAPGNKDGTLVNGLLHHC--PDL---------------------PGISG-K 154
Query: 210 IRPGIVHRLDKGTSGLLVVAK 230
+RPGIVHRLDK TSG +VVAK
Sbjct: 155 LRPGIVHRLDKDTSGCIVVAK 175
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,666,973,779
Number of Sequences: 23463169
Number of extensions: 145261568
Number of successful extensions: 425368
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5026
Number of HSP's successfully gapped in prelim test: 2964
Number of HSP's that attempted gapping in prelim test: 409466
Number of HSP's gapped (non-prelim): 11718
length of query: 240
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 102
effective length of database: 9,121,278,045
effective search space: 930370360590
effective search space used: 930370360590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)