BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026355
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ECD0|PUS2_ARATH RNA pseudourine synthase 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g76050 PE=2 SV=1
Length = 430
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/184 (74%), Positives = 156/184 (84%), Gaps = 4/184 (2%)
Query: 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110
P N AG+++EE VD GK+RLD+WISSRI+G+SRARVQSSIR GLV++NG+VV KVSH
Sbjct: 62 PRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSH 121
Query: 111 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170
NVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPGN TGTLVN
Sbjct: 122 NVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVN 181
Query: 171 GILHHCSLPTLASSN--QEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLL 226
GILHHCSLP + SN ++ SD E SDDEE ++S S AS+RPGIVHRLDKGT+GLL
Sbjct: 182 GILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLL 241
Query: 227 VVAK 230
VVAK
Sbjct: 242 VVAK 245
>sp|Q5Z8P2|PUS2_ORYSJ RNA pseudourine synthase 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os06g0717400 PE=2 SV=1
Length = 445
Score = 224 bits (571), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/191 (61%), Positives = 140/191 (73%), Gaps = 15/191 (7%)
Query: 55 YAGVQLEETVDTKAGKLRLDAWISSRIDG--ISRARVQSSIRSGLVSINGQVVSKVSHNV 112
+ G +LEE V G+ R+DAWIS+R+ G +SRAR+Q+SIR+GLV +NG+ VSKVSH V
Sbjct: 56 HGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMV 115
Query: 113 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 172
KGGD+V+CT+ ELQPLRAE EDIPLDIVYEDD++LVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 116 KGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAI 175
Query: 173 LHHCSLPTLASSNQEAFSDAEDISDDE-------------EFSSSISGASIRPGIVHRLD 219
LHHC + T + + D S D+ E SS + A +RPGIVHRLD
Sbjct: 176 LHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLD 235
Query: 220 KGTSGLLVVAK 230
KGTSGLLVVAK
Sbjct: 236 KGTSGLLVVAK 246
>sp|Q45480|YLYB_BACSU Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus
subtilis (strain 168) GN=ylyB PE=3 SV=3
Length = 303
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 25/172 (14%)
Query: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Q++ T + R+D +++S + SR +VQ ++ G V +NG V K ++ ++ GD V
Sbjct: 3 QIDITASEEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAV-KANYKIQPGDQV 61
Query: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTLVNG++ HC+
Sbjct: 62 TVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT- 120
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D+ S I+G +RPGIVHR+DK TSGLL+VAK
Sbjct: 121 ---------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAK 149
>sp|P74346|Y1629_SYNY3 Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1
Length = 327
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 93/160 (58%), Gaps = 24/160 (15%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+RLD W++ ++ +SR+R Q I SG V NG V + +K GD + I EL PL
Sbjct: 32 VRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDKNLILKTGDRLVVNIPELIPLDV 91
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
A++IPLDI+YED+ ++++NKPA +VVHP PG+ GT+VN +L HC P LA
Sbjct: 92 VAQNIPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHC--PDLAG------- 142
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G RPGIVHRLDK T+G +VVAK
Sbjct: 143 ---------------IGGVQRPGIVHRLDKDTTGAMVVAK 167
>sp|O50310|Y723_CHLP8 Uncharacterized RNA pseudouridine synthase Cpar_0723
OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0723
PE=3 SV=1
Length = 327
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 27/162 (16%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
+R+D +++ +++ ++R +VQ++I G V +NG+ V K ++ VK D ++ T L+P
Sbjct: 12 MRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPV-KSNYRVKSCDHIHLTF--LRPPAP 68
Query: 131 E--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEA 188
E EDIP+ I+YEDD+++V++K A MVVHPA GN TGTL N ILHH
Sbjct: 69 ELAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLG----------- 117
Query: 189 FSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
DA+++ E +RPGIVHRLDK TSGL+++AK
Sbjct: 118 -KDADELDKTE----------MRPGIVHRLDKDTSGLIIIAK 148
>sp|O67638|Y1758_AQUAE Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex
aeolicus (strain VF5) GN=aq_1758 PE=3 SV=1
Length = 316
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 24/159 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +++ SR+ ++ ++ GLV +NG+ V K S ++ G+ V + E +PL +
Sbjct: 17 RLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERVILHVPEPEPLDVK 76
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+IP++I+YED+++ VV KP +VVHP+PG +GTLVN +L+H
Sbjct: 77 PENIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYH---------------- 120
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I D SSI G RPGIVHRLDK T+G++V+AK
Sbjct: 121 ---IKD----LSSIGGVE-RPGIVHRLDKETAGVMVIAK 151
>sp|Q8DEV0|RLUD_VIBVU Ribosomal large subunit pseudouridine synthase D OS=Vibrio
vulnificus (strain CMCP6) GN=rluD PE=3 SV=1
Length = 325
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 31/177 (17%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L TV D++ G+ RLD I+ SR+R++ + G V+++G VV+K V GG+
Sbjct: 5 IELTNTVKDSQLGQ-RLDQAIAELFADFSRSRLKEWLLDGKVTVDGNVVTKPRTKVMGGE 63
Query: 117 MVNCTISELQ-PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
++ ++EL+ +R EA+DIPLDIVYEDD++LV+NKP VVHP G GT++N +L H
Sbjct: 64 VITV-LAELEDEVRWEAQDIPLDIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLFH 122
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
C P +A R GIVHRLDK T+GL+VVAK +
Sbjct: 123 C--PEVAEVP-------------------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|Q87S65|RLUD_VIBPA Ribosomal large subunit pseudouridine synthase D OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluD PE=3 SV=1
Length = 325
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 92/168 (54%), Gaps = 28/168 (16%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
D++ G+ RLD I+ SR+R++ + G V +NG+VV+K V GG+ +
Sbjct: 13 DSQLGQ-RLDQAIAELFADFSRSRLKEWLLDGKVQVNGEVVTKPRTKVMGGEEITLQAEL 71
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
R EA+DIPLDIVYEDD+++V+NKP VVHP G GT++N +LHH
Sbjct: 72 EDEERWEAQDIPLDIVYEDDDIIVINKPRDFVVHPGAGTPDGTVLNALLHH--------- 122
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
+ D ++ R GIVHRLDK T+GL+VVAK +
Sbjct: 123 ----YPDIAEVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|P65836|RLUD_SALTY Ribosomal large subunit pseudouridine synthase D OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluD PE=1 SV=2
Length = 326
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I + V +NGQ+ K V GG+
Sbjct: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGER 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + +R EA+DIPLDIVYEDD++LV+NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYY- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 124 -PPIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|P65837|RLUD_SALTI Ribosomal large subunit pseudouridine synthase D OS=Salmonella
typhi GN=rluD PE=3 SV=2
Length = 326
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 95/175 (54%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I + V +NGQ+ K V GG+
Sbjct: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGER 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + +R EA+DIPLDIVYEDD++LV+NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYY- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 124 -PPIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|Q45826|Y901_CHLAA Uncharacterized RNA pseudouridine synthase Caur_0901
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=Caur_0901 PE=3 SV=2
Length = 316
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 26/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
R+D +++ + +SRA+VQ I G V +G+ + S V+ G ++ TI P
Sbjct: 27 RIDRFLAGAMPDLSRAQVQRLIEQGFVLYDGRS-PRASQPVRPGAVIQLTIPPPIPTELV 85
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE IPLD+VYED ++ V+NKPA MVVHPAPG+ GTLVN +L P LA
Sbjct: 86 AEPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALL--ARYPDLA--------- 134
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
G +RPGIVHRLD+ TSGLLV+A+
Sbjct: 135 --------------IGGELRPGIVHRLDRDTSGLLVIAR 159
>sp|P50513|RLUD_ZYMMO Ribosomal large subunit pseudouridine synthase D OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=rluD PE=3 SV=2
Length = 317
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 92/160 (57%), Gaps = 24/160 (15%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVS-INGQVVSKVSHNVKGGDMVNCTISELQPLRA 130
RLD ++S I +SR R+++ I SG VS G +V + +K D I +P
Sbjct: 16 RLDRALASLITRLSRERLKNLISSGCVSNSQGALVRDPAFKIKSLDCFTVDIPLPRPAHN 75
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E +DIPL+IV+ED+++LVVNKPA MVVHPA GN TLVN +L+HC+
Sbjct: 76 EPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKL---------- 125
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
S I G + RPGIVHR+DK TSGLLVVAK
Sbjct: 126 ------------SGIGGVA-RPGIVHRIDKDTSGLLVVAK 152
>sp|Q9CKA6|RLUD_PASMU Ribosomal large subunit pseudouridine synthase D OS=Pasteurella
multocida (strain Pm70) GN=rluD PE=3 SV=1
Length = 324
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 27/161 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ SR+R+++ I LV +NG VV+ V GG+ + + R E
Sbjct: 18 RLDQALAELFPDYSRSRLKTWIEQNLVHVNGDVVNVPRAKVYGGEQIEIVVEIDDDTRFE 77
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E++PL+IVYEDD++LV+NKP VVHP GNA+GT++N +L+H P +A
Sbjct: 78 PENLPLNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHY--PAIAEVP------ 129
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK T+GL+V+AK I
Sbjct: 130 -------------------RAGIVHRLDKDTTGLMVIAKTI 151
>sp|P65835|RLUD_SHIFL Ribosomal large subunit pseudouridine synthase D OS=Shigella
flexneri GN=rluD PE=3 SV=2
Length = 326
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I V +NG+V K V GG+
Sbjct: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + R E +DIPLDIVYED++++V+NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYY- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 124 -PPIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|P65834|RLUD_ECOL6 Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluD
PE=3 SV=2
Length = 326
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I V +NG+V K V GG+
Sbjct: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + R E +DIPLDIVYED++++V+NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYY- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 124 -PPIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|P33643|RLUD_ECOLI Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli (strain K12) GN=rluD PE=1 SV=4
Length = 326
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I V +NG+V K V GG+
Sbjct: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + R E +DIPLDIVYED++++++NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 124 -PPIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|Q9KU20|RLUD_VIBCH Ribosomal large subunit pseudouridine synthase D OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluD PE=3 SV=1
Length = 324
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 29/176 (16%)
Query: 58 VQLEETV-DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116
++L +TV D++ G+ RLD ++ SR+R++ + G +++NG V++K V GG+
Sbjct: 5 IELTQTVKDSQLGQ-RLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGE 63
Query: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176
++ R EA+D+PL+IVYEDD+++V+NKP VVHP G A T++N +L H
Sbjct: 64 VITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH- 122
Query: 177 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
+S ++ R GIVHRLDK T+GL+VVAK +
Sbjct: 123 ------------YSPIAEVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|Q8X9F0|RLUD_ECO57 Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli O157:H7 GN=rluD PE=3 SV=3
Length = 326
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I V +NG++ K V GG+
Sbjct: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKLCDKPKEKVLGGEQ 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + R E +DIPLDIVYED++++V+NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYY- 123
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 124 -PPIA-----------DVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|Q8ZBV7|RLUD_YERPE Ribosomal large subunit pseudouridine synthase D OS=Yersinia pestis
GN=rluD PE=3 SV=1
Length = 325
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 27/175 (15%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQL TV RLD ++ SR+R++ I V++NG+ ++K V GG++
Sbjct: 5 VQLSATVAESQLGQRLDQALAELFPDYSRSRIKEWILDSRVTVNGKKINKPKEKVLGGEL 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V + R ++IPLDIVYED+++LV+NKP +VVHP GN GT++N +LH+
Sbjct: 65 VAIDAQIEEDARWAPQEIPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHY-- 122
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
+ + D+ R GIVHRLDK T+GL+VVAK +
Sbjct: 123 -----------YPEIMDVP--------------RAGIVHRLDKDTTGLMVVAKTV 152
>sp|P44445|RLUD_HAEIN Ribosomal large subunit pseudouridine synthase D OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluD PE=3 SV=1
Length = 324
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 27/161 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ SR+R+++ I + LV +N ++ + V GG+ + + R E
Sbjct: 18 RLDQTLAELFPEYSRSRLKTWIEADLVKLNDRITNIPREKVLGGERIEIIVEVEDETRFE 77
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+IPL+IVYEDD+++V+NKP +VVHP GN GT++N +L+H P +
Sbjct: 78 AENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHY--PPIVEVP------ 129
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK T+GL+VVAK I
Sbjct: 130 -------------------RAGIVHRLDKDTTGLMVVAKTI 151
>sp|Q9K0B0|RLUD_NEIMB Ribosomal large subunit pseudouridine synthase D OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rluD PE=3 SV=1
Length = 374
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 90/162 (55%), Gaps = 29/162 (17%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQP-LRA 130
RLDA ++ + SR+R+ S I+ G V +N + S+ + GG+ + T+ + L
Sbjct: 40 RLDAVLAKLLPDYSRSRLTSWIKEGAVIVNDKP-SQPKDKMIGGEQICVTVRPSEENLAF 98
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E + LDIVYEDD V+VVNKPA +VVHPA GN TGTL+NG+L HC P L+
Sbjct: 99 VPEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHC--PELSQVP----- 151
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
R GIVHRLDK TSGL+VVAK +
Sbjct: 152 --------------------RAGIVHRLDKETSGLMVVAKTL 173
>sp|Q87AR7|RLUD_XYLFT Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rluD PE=3
SV=1
Length = 331
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 98/181 (54%), Gaps = 32/181 (17%)
Query: 54 NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113
+ AG + TV A R DA ++ SR+R+ I+SG V +NG V+ + V
Sbjct: 8 DLAGFSRQTTVPDGAAGRRFDAVLAELFPEFSRSRLTEWIKSGDVLLNG-VLVRPRDPVY 66
Query: 114 GGDMVNCTISELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171
GG++V + + +R +A +DIPLDI+YED++V V+NKPA +VVHP GN GTLVN
Sbjct: 67 GGEVVWLQV--MPDIRTDAVPQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNA 124
Query: 172 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKV 231
+LH P LA A R G+VHRLDK TSG++VVA+
Sbjct: 125 LLHRD--PALA-------------------------AVPRAGVVHRLDKDTSGVMVVART 157
Query: 232 I 232
+
Sbjct: 158 L 158
>sp|Q9PET9|RLUD_XYLFA Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain 9a5c) GN=rluD PE=3 SV=1
Length = 331
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 94/179 (52%), Gaps = 28/179 (15%)
Query: 54 NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVK 113
+ AG + TV A R DA ++ SR+R+ I+SG V +NG V+ + V
Sbjct: 8 DLAGFSRQTTVPDGAAGRRFDAVLAELFPEFSRSRLTEWIKSGDVLLNG-VLVRPRDPVY 66
Query: 114 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
GG++V + A +DIPLDI+YED++V V+NKPA +VVHP GN GTLVN +L
Sbjct: 67 GGEVVRLQVVPDIRTDAVPQDIPLDILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNALL 126
Query: 174 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
H P LA A R G+VHRLDK TSG++VVA+ +
Sbjct: 127 HRD--PALA-------------------------AVPRAGVVHRLDKDTSGVMVVARTL 158
>sp|Q9JVB6|RLUD_NEIMA Ribosomal large subunit pseudouridine synthase D OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rluD PE=3 SV=1
Length = 374
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 90/162 (55%), Gaps = 29/162 (17%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQP-LRA 130
RLDA ++ + SR+R+ I+ G V +N + S+ + GG+ + T+ + L
Sbjct: 40 RLDAVLAKLLPDYSRSRLTLWIKEGAVIVNDKP-SQPKDKMIGGEQIRVTVRPSEENLAF 98
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
E + LDIVYEDD V+VVNKPA +VVHPA GN TGTL+NG+L HC P L
Sbjct: 99 VPEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHC--PEL--------- 147
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
S I R GIVHRLDK TSGL+VVAK +
Sbjct: 148 ------------SQIP----RAGIVHRLDKETSGLMVVAKTL 173
>sp|Q9L7A7|RLUD_HAEDU Ribosomal large subunit pseudouridine synthase D OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluD PE=3 SV=2
Length = 325
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 27/161 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++ SR+R++ I + LV +NG +V++ V GG+ + + +R E
Sbjct: 19 RLDQALAQLFPDYSRSRIKVWIENDLVKVNGIIVNRARGKVFGGEQIEIQAEIEEEIRFE 78
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
++IPL+IV+EDD+++++NKP ++VVHP GN GT++N +L++ P +A
Sbjct: 79 PQNIPLNIVHEDDDIIIINKPKNLVVHPGAGNPDGTVLNALLYYY--PPIAEVP------ 130
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
R GI+HRLDK T+GL+VVAK I
Sbjct: 131 -------------------RAGIIHRLDKDTTGLMVVAKNI 152
>sp|Q8P682|RLUD_XANCP Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluD PE=3 SV=1
Length = 331
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 29/168 (17%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
D+ AG+ R DA ++ SR+R+ I+SG ++G+ ++ ++GG+ V +
Sbjct: 20 DSAAGR-RFDAVLAELFPEFSRSRLSEWIKSGDALLDGE-TARPRDTLRGGETVQVQVVL 77
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
A +DIPL+++YEDD+VLV++KPA +VVHP GN GTLVN +L
Sbjct: 78 ETQTHAAPQDIPLNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALL----------- 126
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
F A R G+VHRLDK TSG++VVA+ +
Sbjct: 127 ----------------FRDPNLAAVPRAGVVHRLDKDTSGVMVVARTL 158
>sp|Q8XYX8|RLUD_RALSO Ribosomal large subunit pseudouridine synthase D OS=Ralstonia
solanacearum (strain GMI1000) GN=rluD PE=3 SV=1
Length = 358
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 102/198 (51%), Gaps = 47/198 (23%)
Query: 41 SSSSGGNNREPIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSI 100
S+ G EPI V++ E + + RLD ++ + SR+R+Q I +G V +
Sbjct: 28 SAPGAGQAIEPII----VEIPEALHGE----RLDKALAKLLPDYSRSRLQQWIDAGAVRV 79
Query: 101 NGQVVSKVSHNVKGGDMVNCTISELQPLRAE------AEDIPLDIVYEDDNVLVVNKPAH 154
G V + V GGD + E+ P RA+ AE + LD+VYEDD +LV+NKPA
Sbjct: 80 GGAAV-RPRAAVCGGDRI-----EVVPQRADDENAFVAEPVDLDVVYEDDTLLVINKPAG 133
Query: 155 MVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGI 214
+VVHPA GN +GT++NG+LH + A + R GI
Sbjct: 134 LVVHPAAGNWSGTVLNGLLHR-------------YPQAAGLP--------------RAGI 166
Query: 215 VHRLDKGTSGLLVVAKVI 232
VHRLDK TSGL+VVA+ +
Sbjct: 167 VHRLDKETSGLMVVARTL 184
>sp|P57481|RLUD_BUCAI Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rluD PE=3 SV=1
Length = 312
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 27/163 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD +S SR+ ++ I V +N +V++ + GG+ + L
Sbjct: 19 RLDLVLSKLFREYSRSYLKKLIIMNQVLVNESIVNQPDKKILGGETLTIHPFSKDLLVDI 78
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
E+I LDIVYED ++L++NKPA +VVHP GN +GT++N +L+H + +
Sbjct: 79 PENIFLDIVYEDSDILIINKPAGLVVHPGSGNKSGTILNALLYH-------------YKN 125
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
++D+ R GIVHRLDK TSGL+V+AK IFS
Sbjct: 126 SKDLP--------------RAGIVHRLDKDTSGLMVIAKNIFS 154
>sp|Q82WZ5|RLUD_NITEU Ribosomal large subunit pseudouridine synthase D OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rluD PE=3
SV=1
Length = 344
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 34/193 (17%)
Query: 50 EPIANYAGVQ-----LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQV 104
+P ++ AG Q +E TV LRLD ++ + SR+R+Q I VS++
Sbjct: 17 KPDSSAAGSQENENTIELTVPDNLAGLRLDQALAQLLPQWSRSRLQGWIEQKCVSVDS-A 75
Query: 105 VSKVSHNVKGGDMVNCTISELQPLRA-EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 163
+ V GG+ + + + ++ +AE IPL I++EDD++++++KPA +VVHP GN
Sbjct: 76 AATCKQKVWGGESIRVIAGQTENDQSHQAEAIPLKILFEDDHLIIIDKPAGLVVHPGNGN 135
Query: 164 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223
GTL+N +L+H P L+ R GIVHRLDK T+
Sbjct: 136 WHGTLLNALLNHA--PQLSQVP-------------------------RAGIVHRLDKDTT 168
Query: 224 GLLVVAKVIFSPF 236
GLLVVAK I + F
Sbjct: 169 GLLVVAKTIEAQF 181
>sp|Q8PHN2|RLUD_XANAC Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1
Length = 331
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 29/168 (17%)
Query: 65 DTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124
D AG+ R DA ++ SR+R+ I+SG ++G+ +++ ++GG+ V +
Sbjct: 20 DNAAGR-RFDAVLAELFPEFSRSRLSEWIKSGDALLDGE-MARPRDTLRGGESVQVQVVL 77
Query: 125 LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 184
A +DIPL ++YED+ VLV++KPA +VVHP GN TLVN +L P LAS
Sbjct: 78 ETQTHAAPQDIPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRD--PALASV 135
Query: 185 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
R G+VHRLDK TSG++VVA+ +
Sbjct: 136 P-------------------------RAGVVHRLDKDTSGVMVVARTV 158
>sp|Q89AD9|RLUD_BUCBP Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rluD PE=3 SV=1
Length = 317
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 27/159 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE 131
RLD ++S SR ++ I S V +NG+++ + V D+++ + +
Sbjct: 20 RLDQVLASLFKKHSRTILKRHILSKDVCVNGRILDQPDAKVLYKDIISINLKFKAKNDYQ 79
Query: 132 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 191
AE+I L+++YEDD++LV+NK + VVHP GN +GTL+N +LH
Sbjct: 80 AENIFLNVIYEDDDILVINKQDNFVVHPGAGNTSGTLLNALLH----------------- 122
Query: 192 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
D F+ R GIVHRLDK T+GL+V+AK
Sbjct: 123 ----RDSTFFNIP------RAGIVHRLDKDTTGLMVIAK 151
>sp|P33640|RLUD_PSEAE Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluD PE=3 SV=2
Length = 320
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 28/175 (16%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
+Q V + G RLD + SR+R+ I+ G ++++G V+ G +
Sbjct: 5 IQRAAEVPFELGGQRLDQIAAQLFPEHSRSRLAGWIKDGRLTVDGAVLRPRDIVHSGAQL 64
Query: 118 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 177
V E Q A+DI L+IVYED+++LV++KPA +VVHPA G+ GTL+N +L+H
Sbjct: 65 VLEAEQEAQG-EWLAQDIELEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHV- 122
Query: 178 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
P +A+ R GIVHRLDK T+GL+VVAK +
Sbjct: 123 -PDIANVP-------------------------RAGIVHRLDKDTTGLMVVAKTL 151
>sp|Q8K9E9|RLUD_BUCAP Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluD PE=3 SV=1
Length = 315
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 29/164 (17%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC-TISELQPLRA 130
RLD +S SR+ ++ I V ING++ ++ + GG+ + + E P+
Sbjct: 19 RLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILGGEKITIYSTDEKLPINL 78
Query: 131 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 190
++I L+ +YED N+L++NKP +VVHP GN GT++N +L+ ++
Sbjct: 79 -PQNIALNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYR-------------YT 124
Query: 191 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ I R GI+HRLDK TSGL+V+AK IFS
Sbjct: 125 NISSIP--------------RCGIIHRLDKDTSGLMVIAKTIFS 154
>sp|P75485|Y292_MYCPN Uncharacterized RNA pseudouridine synthase MG209 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_292 PE=3 SV=1
Length = 309
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 37/175 (21%)
Query: 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN 119
+E+T + RLD ++++ ++ +SR +V I GLVS+NG+ ++K V+ D V+
Sbjct: 1 MEQTFSVTTAQ-RLDTFLATLLN-LSRVKVAKLIVDGLVSVNGKKITKNGWLVQPEDRVH 58
Query: 120 CTISE----LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 175
SE P+ + D PLDI+YED+ ++VVNKP ++ HP N + +L+ L H
Sbjct: 59 VNWSEELFEKVPVEVQPYDFPLDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFH 118
Query: 176 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
C ++Q F +VHRLD+ TSG++++AK
Sbjct: 119 C-------NHQPVF------------------------LVHRLDRDTSGVIMLAK 142
>sp|P59838|RLUD_BLOFL Ribosomal large subunit pseudouridine synthase D OS=Blochmannia
floridanus GN=rluD PE=3 SV=1
Length = 321
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 40/170 (23%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVN---------CTI 122
RLD +S + SR++++ I + V +N QV + V G+++ C
Sbjct: 17 RLDYILSKLLPQYSRSQIKHWILNKKVVVNNQVSTLPRKKVVYGELIEIKYINNNDICKS 76
Query: 123 SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
++ P ++IPL+I+YED+++LV+NK ++MVVHP G+ GT++N +L+ P++
Sbjct: 77 EDIVP-----QNIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLY--RYPSIL 129
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVI 232
+++A GIV RLDK T+GL+++AK +
Sbjct: 130 KISKQA------------------------GIVQRLDKDTTGLMIIAKTV 155
>sp|P70870|RLUD_BORBU Ribosomal large subunit pseudouridine synthase D OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=rluD PE=3 SV=2
Length = 326
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 35/183 (19%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVS-KVSHNVKGGD 116
++++ K LRLD ++S + +R++++ NG+ + K+S V D
Sbjct: 2 IRVKREFTVKENALRLDLYLSGNFEVFTRSQIKRRNVEAFKKSNGKFLKIKLSKPVFKDD 61
Query: 117 MVNCTISE-------LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 169
+ E L+P +IP+ I+YED NV+V+NKP ++ HP + T+V
Sbjct: 62 EILIEFDEESSQIDCLRP-----SNIPIAIIYEDSNVIVLNKPQGILSHPGISHWDDTVV 116
Query: 170 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 229
N +L+H + I+ +EE IRPGIVHRLDK TSG+L+ A
Sbjct: 117 NFLLYHIK--------------SLKINFNEE--------KIRPGIVHRLDKDTSGVLICA 154
Query: 230 KVI 232
K I
Sbjct: 155 KNI 157
>sp|Q9ZL98|Y745_HELPJ Uncharacterized RNA pseudouridine synthase jhp_0682 OS=Helicobacter
pylori (strain J99) GN=jhp_0682 PE=3 SV=1
Length = 327
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 28/165 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL--QPLR 129
R+D +++ + IS+ +V + I+ GLV + V K +K GD + ++ +PL+
Sbjct: 13 RIDEFLAKELQ-ISKNQVLNLIKEGLVFCQKKEVKKGGLALKEGDAITLLTPKIVPKPLK 71
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
E D+ +++++ED+++LV+NKP ++VVH AP TLV+ L S N E
Sbjct: 72 KEL-DLEIEVIFEDEDLLVLNKPPNLVVHKAPSVKEPTLVDW---------LKSQNYEL- 120
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
S G R GIVHRLDK TSG +V+AK F+
Sbjct: 121 --------------SNLGLKERYGIVHRLDKDTSGGIVIAKNNFT 151
>sp|O25441|Y745_HELPY Uncharacterized RNA pseudouridine synthase HP_0745 OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=HP_0745 PE=3 SV=1
Length = 327
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 28/165 (16%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISEL--QPLR 129
RLD +++ + IS+ +V + I+ GLV + V K +K GD + ++ +PL+
Sbjct: 13 RLDEFLAKELQ-ISKNQVLNLIKEGLVFCQKKEVKKGGLALKEGDEITLLTPKITPKPLK 71
Query: 130 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 189
E D+ +++++ED+++LV+NKP ++VVH A TLV+ +
Sbjct: 72 KEL-DLEIEVIFEDEDLLVLNKPPNLVVHKALSVKEPTLVDWL----------------- 113
Query: 190 SDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+ + + S G R GIVHRLDK TSG +V+AK F+
Sbjct: 114 -------EFKNYELSNLGLKERYGIVHRLDKDTSGGIVIAKNNFT 151
>sp|Q9HZM9|RLUC_PSEAE Ribosomal large subunit pseudouridine synthase C OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluC PE=3 SV=1
Length = 318
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 52/193 (26%)
Query: 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSIN-GQVVSKVS 109
P + GVQL + AG+ R+D ++ +R+ G + + +R G V +N G++ K
Sbjct: 4 PASPTTGVQLLDVPPELAGQ-RIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRI--KPD 60
Query: 110 HNVKGGDMVNCTISELQPLRAEAEDIPLD------------IVYEDDNVLVVNKPAHMVV 157
+ ++ GD V PLR D P IVYED ++VVNKPA + V
Sbjct: 61 YRLQAGDQVRVP-----PLRLAERDEPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAV 115
Query: 158 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 217
H G + G + ++ DA+DI +VHR
Sbjct: 116 HGGSGVSAGVI--------------EVFRQLRPDAKDIE-----------------LVHR 144
Query: 218 LDKGTSGLLVVAK 230
LD+ TSGLL++AK
Sbjct: 145 LDRDTSGLLMIAK 157
>sp|O31613|YJBO_BACSU Uncharacterized RNA pseudouridine synthase YjbO OS=Bacillus
subtilis (strain 168) GN=yjbO PE=3 SV=1
Length = 283
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 83 GISRARVQSSIR--SGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAE-AEDIPLDI 139
GIS+ R+ + I+ G + ING+ V+ V + +K GD++ E Q AE +PLDI
Sbjct: 11 GISK-RLLTDIKFGGGDLQINGEHVT-VKYVLKEGDLLIVKFPEEQVSETLLAEPVPLDI 68
Query: 140 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDE 199
+YED++VLV+NK ++ P+ + +G++ NGI+ H
Sbjct: 69 LYEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHY----------------------- 105
Query: 200 EFSSSISGASIRPGIVHRLDKGTSGLLVVAKVIFS 234
+G +V RLD+ TSG+++VAK F+
Sbjct: 106 ----QTTGVRATVHLVTRLDRDTSGIMLVAKHRFA 136
>sp|P54604|YHCT_BACSU Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus
subtilis (strain 168) GN=yhcT PE=3 SV=2
Length = 302
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 27/119 (22%)
Query: 112 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 171
VK GD V + E + E LDI++ED+++L++NKPA + HP TGTL N
Sbjct: 58 VKKGDRVFIDLQESEASSVIPEYGELDILFEDNHMLIINKPAGIATHPNEDGQTGTLANL 117
Query: 172 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
I +H I+G + + VHRLD+ TSG +V AK
Sbjct: 118 IAYHY---------------------------QINGETCKVRHVHRLDQDTSGAIVFAK 149
>sp|P45614|Y714_MYCCT Uncharacterized RNA pseudouridine synthase MCAP_0714 OS=Mycoplasma
capricolum subsp. capricolum (strain California kid /
ATCC 27343 / NCTC 10154) GN=MCAP_0714 PE=3 SV=2
Length = 302
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 26/145 (17%)
Query: 89 VQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAE---DIPLDIVYEDDN 145
+ IR+ + IN + V+ ++ +K D+V S +R + ++ LDIVYED+N
Sbjct: 31 IYKWIRNKSIKINSKRVNDKNYLLKINDVVEVYDSNKPIIRDQFNYISNVNLDIVYEDNN 90
Query: 146 VLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSI 205
+L+VNKP ++ +H +++ L + S + D +E+ +
Sbjct: 91 ILIVNKPNNLEMHS-------------IYNLCLDDMVKSY---------LVDKKEYDIYL 128
Query: 206 SGASIRPGIVHRLDKGTSGLLVVAK 230
+ + VHRLDK TSGL++ AK
Sbjct: 129 ENSFVISH-VHRLDKLTSGLVIYAK 152
>sp|P59835|RLUC_HAEDU Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluC PE=3 SV=1
Length = 320
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 55/190 (28%)
Query: 56 AGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSIN-GQVVSKVSHNVKG 114
A VQ D +AG+ RLD ++ +++ G+ ++ + +R G V +N G+V K + ++
Sbjct: 9 ANVQFFTISDDEAGQ-RLDNFLLAKLKGVPKSLIYRIVRKGEVRVNKGRV--KPDYKLQH 65
Query: 115 GDMVNCTISELQPLRAEA---------EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 165
D+V + + P + EA ++ I+YEDD +LV+NKP+ + VH G +
Sbjct: 66 NDIVRIPLVRVTP-KNEAPISTKLNKVAELEQHILYEDDVMLVLNKPSGIGVHGGSGLSF 124
Query: 166 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPG-----IVHRLDK 220
G + EA ++RP +VHR+D+
Sbjct: 125 GVI------------------EALR------------------ALRPQARFLELVHRIDR 148
Query: 221 GTSGLLVVAK 230
TSG+L+VAK
Sbjct: 149 DTSGILLVAK 158
>sp|Q9KQH0|RLUC_VIBCH Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluC PE=3 SV=1
Length = 315
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 44/178 (24%)
Query: 64 VDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC--- 120
+D R+D ++ +++ I ++ V +R G V +N + V K + ++ GD+V
Sbjct: 13 IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDVVRVPPV 71
Query: 121 --TISELQPL-----RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 173
+ E +P ++ ++ IVYEDD++L++NKP+ VH G L
Sbjct: 72 TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSG----------L 121
Query: 174 HHCSLPTL-ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
H ++ L A Q F + +VHR+D+ TSG+L+VAK
Sbjct: 122 HFGAIEALRALRPQARFLE----------------------LVHRIDRDTSGILLVAK 157
>sp|Q8D8G1|RLUC_VIBVU Ribosomal large subunit pseudouridine synthase C OS=Vibrio
vulnificus (strain CMCP6) GN=rluC PE=3 SV=1
Length = 315
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 58/190 (30%)
Query: 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117
VQ+ + + AG+ R+D ++ +++ + ++ + +R G V +N + V K + + GD+
Sbjct: 8 VQIVDIDEDMAGQ-RIDNFLRNQLKDVPKSMIYRIVRKGEVRVNKKRV-KAEYKLAAGDV 65
Query: 118 VN---CTISELQPLRA---------EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 165
V T+ + P A E +D+ I+YEDD++LV+NKP+ VH G
Sbjct: 66 VRIPPVTLEKKDPETAPSTKLNKVAELQDL---IIYEDDHLLVLNKPSGTAVHGGSGLKF 122
Query: 166 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRP-----GIVHRLDK 220
G + EA ++RP +VHR+D+
Sbjct: 123 GAI------------------EALR------------------ALRPEARFLELVHRIDR 146
Query: 221 GTSGLLVVAK 230
TSG+L+VAK
Sbjct: 147 DTSGILLVAK 156
>sp|Q8FIP7|RLUC_ECOL6 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluC
PE=3 SV=1
Length = 319
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 50/172 (29%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR-A 130
R+D ++ +++ G+ ++ + +R G V +N + + K + ++ GD V + P+R A
Sbjct: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVR-----IPPVRVA 74
Query: 131 EAEDIPLD------------IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
E E+ + I+YEDD++LV+NKP+ VH G + G ++ G+
Sbjct: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGL------ 127
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
A + F + +VHRLD+ TSG+L+VAK
Sbjct: 128 --RALRPEARFLE----------------------LVHRLDRDTSGVLLVAK 155
>sp|P75230|Y548_MYCPN Uncharacterized RNA pseudouridine synthase MG370 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_548 PE=3 SV=1
Length = 326
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 32/168 (19%)
Query: 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPL-- 128
+R++ + + I ++ +R G V +N +K+ V GD + + ++P
Sbjct: 15 VRIEKFCLKLLPNIKLSQFFKLLRLGKVLLNN-TKAKLGQRVSSGDTIVFQFA-IEPYLH 72
Query: 129 -RAEAEDIP-----LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 182
+E D+ L +++ED+ ++VV+KPA +V P + L N +L HC
Sbjct: 73 NHSEVVDLTQVQDDLQVIFEDEQLIVVDKPAGVVCQPDAKHELFNLANSLLKHCGY---- 128
Query: 183 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
++ F +S+S P HR+D+ T GL++ AK
Sbjct: 129 ---------------NQYFKNSLSFI---PRFAHRIDRNTCGLVIGAK 158
>sp|Q4UKQ3|RLUC_RICFE Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=rluC PE=3
SV=1
Length = 305
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 45/172 (26%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV------NCTISEL 125
RLD ++ +++ ++ ++R +++N Q ++ S VKGGD + N + +
Sbjct: 12 RLDKYLKRLYPLLTQGVIEKALRQKQITVNSQK-AEASLRVKGGDKIFINDKFNLPVKQP 70
Query: 126 QPLRAEAEDIPLD-------IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
+ L +I L ++YEDDN++ +NKPA + G+ ++ L + +
Sbjct: 71 EKLVFTDAEIKLAKKITTDYLIYEDDNLIAINKPAGLATQ--GGSKINLSIDSALKYLNY 128
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
GA + +VHRLDK TSGLL++AK
Sbjct: 129 ---------------------------KGADFK--LVHRLDKETSGLLLIAK 151
>sp|P0AA40|RLUC_SHIFL Ribosomal large subunit pseudouridine synthase C OS=Shigella
flexneri GN=rluC PE=3 SV=1
Length = 319
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 50/172 (29%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR-A 130
R+D ++ +++ G+ ++ + +R G V +N + + K + ++ GD V + P+R A
Sbjct: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVR-----IPPVRVA 74
Query: 131 EAEDIPLD------------IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
E E+ + I+YEDD++LV+NKP+ VH G + G ++ G+
Sbjct: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGL------ 127
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
A + F + +VHRLD+ TSG+L+VAK
Sbjct: 128 --RALRPEARFLE----------------------LVHRLDRDTSGVLLVAK 155
>sp|P0AA39|RLUC_ECOLI Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli (strain K12) GN=rluC PE=1 SV=1
Length = 319
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 50/172 (29%)
Query: 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR-A 130
R+D ++ +++ G+ ++ + +R G V +N + + K + ++ GD V + P+R A
Sbjct: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVR-----IPPVRVA 74
Query: 131 EAEDIPLD------------IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
E E+ + I+YEDD++LV+NKP+ VH G + G ++ G+
Sbjct: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGL------ 127
Query: 179 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 230
A + F + +VHRLD+ TSG+L+VAK
Sbjct: 128 --RALRPEARFLE----------------------LVHRLDRDTSGVLLVAK 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,598,814
Number of Sequences: 539616
Number of extensions: 3478539
Number of successful extensions: 10844
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 10616
Number of HSP's gapped (non-prelim): 193
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)