Query 026355
Match_columns 240
No_of_seqs 167 out of 1682
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 1.3E-32 4.5E-37 248.7 5.5 151 60-237 6-156 (325)
2 1ksk_A Ribosomal small subunit 100.0 2.3E-29 7.8E-34 217.6 6.3 120 69-236 2-122 (234)
3 1vio_A Ribosomal small subunit 99.9 1.2E-28 4.2E-33 214.3 5.9 118 70-235 2-120 (243)
4 3dh3_A Ribosomal large subunit 99.9 3.5E-27 1.2E-31 210.3 10.7 122 68-237 4-125 (290)
5 2i82_A Ribosomal large subunit 99.7 8E-19 2.7E-23 150.0 6.0 68 137-237 12-80 (217)
6 2oml_A Ribosomal large subunit 99.7 9.8E-19 3.3E-23 146.4 2.0 66 137-237 4-69 (189)
7 2olw_A Ribosomal large subunit 99.7 1.3E-18 4.5E-23 148.9 2.0 68 135-237 30-97 (217)
8 1v9k_A Ribosomal large subunit 99.7 1.5E-17 5E-22 143.1 5.9 69 138-237 3-71 (228)
9 2gml_A Ribosomal large subunit 99.5 1.5E-14 5E-19 125.2 3.2 60 143-237 13-72 (237)
10 2k6p_A Uncharacterized protein 99.0 4.2E-11 1.4E-15 88.7 0.9 75 71-146 1-83 (92)
11 1dm9_A Hypothetical 15.5 KD pr 99.0 5.1E-10 1.7E-14 88.7 5.5 57 67-124 5-61 (133)
12 1c05_A Ribosomal protein S4 de 98.8 4.1E-09 1.4E-13 85.8 5.2 56 68-123 48-103 (159)
13 2vqe_D 30S ribosomal protein S 98.8 2.9E-09 9.9E-14 90.4 3.4 81 69-162 97-180 (209)
14 1p9k_A ORF, hypothetical prote 98.7 1.5E-09 5.1E-14 78.2 0.9 55 68-122 18-72 (79)
15 2cqj_A BRMS2, U3 small nucleol 98.6 3E-08 1E-12 70.2 3.4 51 70-120 7-59 (71)
16 3r8n_D 30S ribosomal protein S 98.4 3.2E-08 1.1E-12 83.6 0.4 55 69-123 93-147 (205)
17 3hp7_A Hemolysin, putative; st 98.4 2E-07 6.7E-12 82.8 4.7 56 69-124 5-62 (291)
18 3bbn_D Ribosomal protein S4; s 98.4 1E-07 3.4E-12 80.3 2.7 54 70-123 88-141 (201)
19 3j20_D 30S ribosomal protein S 98.2 5.4E-07 1.8E-11 74.6 2.9 53 70-122 102-156 (180)
20 2xzm_D Ribosomal protein S4 co 98.1 9.5E-07 3.2E-11 73.2 3.1 54 69-122 105-158 (181)
21 3u5c_J 40S ribosomal protein S 97.9 2.3E-06 7.9E-11 71.6 1.4 51 70-120 106-158 (197)
22 3iz6_C 40S ribosomal protein S 97.4 5.1E-07 1.7E-11 75.5 -9.7 56 68-123 106-161 (195)
23 3j20_E 30S ribosomal protein S 97.1 0.0011 3.8E-08 57.0 7.0 55 68-122 40-95 (243)
24 3kbg_A 30S ribosomal protein S 96.9 0.0016 5.4E-08 54.9 6.2 53 68-120 5-58 (213)
25 1r3e_A TRNA pseudouridine synt 95.1 0.018 6E-07 51.3 4.5 50 144-232 3-52 (309)
26 1sgv_A TRNA pseudouridine synt 94.9 0.022 7.7E-07 50.7 4.5 51 143-232 5-55 (316)
27 1k8w_A TRNA pseudouridine synt 94.9 0.023 7.9E-07 50.9 4.5 50 144-232 25-74 (327)
28 2aus_C Pseudouridine synthase; 94.8 0.024 8.1E-07 50.9 4.5 52 141-231 43-94 (334)
29 2xzm_W 40S ribosomal protein S 94.4 0.079 2.7E-06 45.8 6.5 55 68-122 39-96 (260)
30 2apo_A Probable tRNA pseudouri 94.3 0.037 1.3E-06 50.1 4.5 53 141-232 63-115 (357)
31 3iz6_D 40S ribosomal protein S 94.2 0.036 1.2E-06 48.0 3.9 54 69-122 40-94 (265)
32 3u28_A H/ACA ribonucleoprotein 93.7 0.052 1.8E-06 49.9 4.2 53 141-232 56-108 (400)
33 3u5c_E RP5, S7, YS6, 40S ribos 93.6 0.037 1.3E-06 47.9 3.0 55 68-122 39-94 (261)
34 1jil_A Tyrrs, tyrosyl-tRNA syn 92.9 0.019 6.4E-07 53.1 0.0 49 70-118 352-400 (420)
35 1h3f_A Tyrosyl-tRNA synthetase 92.5 0.22 7.4E-06 46.2 6.6 47 70-116 368-414 (432)
36 1fm0_D Molybdopterin convertin 90.4 0.62 2.1E-05 32.2 5.8 52 68-122 23-76 (81)
37 2ktl_A Tyrosyl-tRNA synthetase 90.1 0.53 1.8E-05 37.9 5.8 37 70-106 49-85 (164)
38 2jan_A Tyrosyl-tRNA synthetase 90.1 0.22 7.6E-06 46.1 4.0 44 72-115 357-400 (432)
39 2ts1_A Tyrosyl-tRNA synthetase 87.4 0.11 3.8E-06 48.0 0.0 48 70-117 351-398 (419)
40 2hj1_A Hypothetical protein; s 77.4 0.25 8.5E-06 36.4 -1.5 52 69-123 34-85 (97)
41 1wv3_A Similar to DNA segregat 77.4 2.7 9.1E-05 35.5 4.7 41 94-149 133-174 (238)
42 2q5w_D Molybdopterin convertin 76.6 2.6 9E-05 28.6 3.8 25 97-122 48-72 (77)
43 3po0_A Small archaeal modifier 73.0 3 0.0001 29.2 3.4 26 96-122 59-84 (89)
44 3rpf_C Molybdopterin convertin 71.9 2.5 8.6E-05 28.7 2.7 50 70-122 20-69 (74)
45 2cu3_A Unknown function protei 69.0 4.5 0.00016 26.7 3.4 45 69-122 12-59 (64)
46 1rws_A Hypothetical protein PF 68.5 1.7 6E-05 30.0 1.2 43 69-121 29-71 (77)
47 1ryj_A Unknown; beta/alpha pro 67.5 5.6 0.00019 26.8 3.7 44 69-122 22-65 (70)
48 3fm8_A Kinesin-like protein KI 66.1 5 0.00017 30.5 3.5 24 96-120 90-113 (124)
49 1tyg_B YJBS; alpha beta barrel 65.3 5.4 0.00018 28.5 3.3 45 69-122 34-82 (87)
50 3hvz_A Uncharacterized protein 64.7 4.8 0.00016 28.1 2.9 24 98-122 44-67 (78)
51 2kl0_A Putative thiamin biosyn 64.6 3.3 0.00011 28.4 2.0 45 69-122 13-60 (73)
52 3dwg_C 9.5 kDa culture filtrat 64.6 5.7 0.00019 28.0 3.4 26 97-122 60-88 (93)
53 1vjk_A Molybdopterin convertin 64.1 3.3 0.00011 29.7 2.0 24 97-121 69-92 (98)
54 2k5p_A THis protein, thiamine- 63.3 3.6 0.00012 28.6 2.0 46 69-122 16-64 (78)
55 1f0z_A THis protein; ubiquitin 61.0 3.8 0.00013 27.2 1.7 45 69-122 14-61 (66)
56 4egx_A Kinesin-like protein KI 60.2 6.7 0.00023 31.8 3.4 24 96-120 140-163 (184)
57 4ejq_A Kinesin-like protein KI 59.4 7.3 0.00025 30.5 3.4 25 95-120 109-133 (154)
58 2g1e_A Hypothetical protein TA 54.1 5.5 0.00019 27.7 1.7 25 97-121 57-84 (90)
59 2qjl_A URM1, ubiquitin-related 53.6 11 0.00038 27.0 3.3 26 97-122 66-94 (99)
60 2kmm_A Guanosine-3',5'-BIS(dip 52.3 9.6 0.00033 25.2 2.7 47 69-123 17-63 (73)
61 2k9x_A Tburm1, uncharacterized 48.9 10 0.00036 28.1 2.6 24 98-121 70-96 (110)
62 1wln_A Afadin; beta sandwich, 48.0 9.8 0.00034 28.2 2.3 25 95-120 79-103 (120)
63 3oug_A Aspartate 1-decarboxyla 47.0 18 0.00062 27.1 3.6 23 95-121 69-91 (114)
64 2l32_A Small archaeal modifier 46.7 5.9 0.0002 27.2 0.8 44 68-122 18-61 (74)
65 3hx1_A SLR1951 protein; P74513 46.0 14 0.00046 28.0 2.9 23 96-120 82-104 (131)
66 3uv0_A Mutator 2, isoform B; F 45.7 6.7 0.00023 29.0 1.0 22 94-117 60-81 (102)
67 3gqs_A Adenylate cyclase-like 43.5 12 0.00043 26.9 2.2 24 96-120 69-92 (106)
68 1wgk_A Riken cDNA 2900073H19 p 42.4 4.6 0.00016 30.2 -0.3 46 73-122 48-103 (114)
69 3po8_A RV0020C protein, putati 41.5 17 0.00059 25.7 2.7 23 96-120 65-87 (100)
70 2l52_A Methanosarcina acetivor 41.1 8.8 0.0003 27.6 1.1 26 97-122 66-94 (99)
71 1v8c_A MOAD related protein; r 39.6 20 0.00067 28.5 3.0 26 97-122 54-82 (168)
72 3plu_A Ubiquitin-like modifier 38.2 5 0.00017 29.1 -0.7 63 56-122 30-92 (93)
73 2jqj_A DNA damage response pro 38.2 21 0.00072 27.5 2.9 27 94-120 85-111 (151)
74 4h87_A Kanadaptin; FHA domain 36.4 30 0.001 26.1 3.5 24 96-120 94-119 (130)
75 2xt9_B Putative signal transdu 35.8 28 0.00094 25.4 3.1 24 95-120 72-95 (115)
76 2rsx_A Uncharacterized protein 35.6 1.6E+02 0.0055 23.2 7.9 52 51-105 43-95 (159)
77 2og0_A Excisionase; protein-DN 34.6 45 0.0015 21.3 3.6 29 71-99 3-31 (52)
78 2jmz_A Hypothetical protein MJ 33.9 1.3E+02 0.0046 23.5 7.3 62 101-162 110-178 (186)
79 1vc3_B L-aspartate-alpha-decar 33.9 35 0.0012 24.8 3.3 22 95-120 42-63 (96)
80 1uhe_A Aspartate 1-decarboxyla 32.7 22 0.00074 26.0 2.0 22 95-120 40-61 (97)
81 3p42_A Predicted protein; beta 32.7 25 0.00087 29.4 2.7 49 68-123 145-203 (236)
82 1r21_A Antigen KI-67; beta san 32.0 21 0.00072 26.5 2.0 24 96-120 75-98 (128)
83 3plx_B Aspartate 1-decarboxyla 31.5 23 0.0008 26.0 2.0 23 95-121 41-63 (102)
84 1uh6_A Ubiquitin-like 5; beta- 30.5 9 0.00031 28.0 -0.4 61 57-121 38-98 (100)
85 2kb3_A Oxoglutarate dehydrogen 29.5 27 0.00093 26.8 2.2 23 96-120 108-130 (143)
86 1wju_A NEDD8 ultimate buster-1 29.4 4.2 0.00014 29.9 -2.4 59 58-120 30-88 (100)
87 2pie_A E3 ubiquitin-protein li 28.1 47 0.0016 25.0 3.4 27 96-122 75-102 (138)
88 1g6g_A Protein kinase RAD53; b 26.9 46 0.0016 24.6 3.1 28 94-121 77-105 (127)
89 1gxc_A CHK2, CDS1, serine/thre 25.2 42 0.0014 25.7 2.6 26 96-121 103-129 (149)
90 1g3g_A Protien kinase SPK1; FH 25.1 55 0.0019 25.5 3.3 28 94-121 105-133 (164)
91 1pqh_A Aspartate 1-decarboxyla 24.5 46 0.0016 25.9 2.6 22 95-120 83-104 (143)
92 3m62_B UV excision repair prot 24.4 12 0.00042 27.0 -0.6 63 57-123 11-73 (106)
93 3oun_A Putative uncharacterize 24.2 47 0.0016 26.1 2.7 22 97-120 128-149 (157)
94 2daf_A FLJ35834 protein; hypot 24.0 20 0.00069 27.1 0.5 64 57-124 26-89 (118)
95 2bps_A YUKD protein; ubiquitin 23.6 24 0.00082 24.7 0.8 64 54-120 13-80 (81)
96 2c45_A Aspartate 1-decarboxyla 23.1 43 0.0015 25.9 2.2 23 95-121 66-88 (139)
97 1uht_A Expressed protein; FHA 22.8 27 0.00091 25.5 1.0 24 97-120 77-101 (118)
98 1mzk_A Kinase associated prote 22.6 38 0.0013 25.6 1.9 26 95-120 75-109 (139)
99 1lgp_A Cell cycle checkpoint p 22.5 28 0.00095 25.3 1.0 26 97-122 69-95 (116)
100 2kfu_A RV1827 PThr 22; FHA dom 21.9 41 0.0014 26.5 2.0 22 97-120 118-139 (162)
101 1pm6_A Excisionase; antiparall 21.7 88 0.003 21.3 3.4 29 71-99 3-31 (72)
102 1dmz_A Protein (protein kinase 20.6 37 0.0013 26.4 1.5 28 94-121 81-109 (158)
103 3cp0_A Membrane protein implic 20.6 1.6E+02 0.0054 19.8 4.7 29 95-123 39-71 (82)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=99.97 E-value=1.3e-32 Score=248.74 Aligned_cols=151 Identities=40% Similarity=0.606 Sum_probs=67.3
Q ss_pred EEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEeccCCcccccccCCCcee
Q 026355 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDI 139 (240)
Q Consensus 60 ~~~~V~~~~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~~~~~~~~~p~~~~l~I 139 (240)
++++|+..++++|||+||++.++.+||+.++++|++|+|+|||+++.+++++|++||+|++.....++....++.+++.|
T Consensus 6 ~~~~v~~~~~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~i 85 (325)
T 1v9f_A 6 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDI 85 (325)
T ss_dssp ----------------------------------------------------------------------CCCCCCCCCE
T ss_pred EEEEECCccCCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeE
Confidence 45678888899999999999876799999999999999999999966899999999999998764433334456677899
Q ss_pred eecCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCC
Q 026355 140 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLD 219 (240)
Q Consensus 140 lyed~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLD 219 (240)
+|||++++|+|||+||+|||++++..+|+++.|..++... ....++++|||||
T Consensus 86 lyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~---------------------------~~~~~~~~vhRLD 138 (325)
T 1v9f_A 86 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI---------------------------ADVPRAGIVHRLD 138 (325)
T ss_dssp EEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGG---------------------------GGSGGGGBCCCCC
T ss_pred EEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhc---------------------------CCCCceeeecCCC
Confidence 9999999999999999999998887889999998876210 0113578899999
Q ss_pred CCCceEEEeecCCccccC
Q 026355 220 KGTSGLLVVAKVIFSPFG 237 (240)
Q Consensus 220 r~TSGLLl~ak~~~aa~~ 237 (240)
++||||||||||+++++.
T Consensus 139 ~~TSGlll~ak~~~~~~~ 156 (325)
T 1v9f_A 139 KDTTGLMVVAKTVPAQTR 156 (325)
T ss_dssp TTCEEEEEEESSHHHHHH
T ss_pred CCCeeEEEEEcCHHHHHH
Confidence 999999999999987653
No 2
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=99.95 E-value=2.3e-29 Score=217.55 Aligned_cols=120 Identities=21% Similarity=0.270 Sum_probs=102.7
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEeccCCcccccccCCCceeeec-CCcEE
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE-DDNVL 147 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~~~~~~~~~p~~~~l~Ilye-d~~~l 147 (240)
+++|||+||++. +.+||+.++++|++|+|+|||+++++++++|++||.|++.. ..|+|| |++++
T Consensus 2 ~~~RLd~~L~~~-~~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~e~d~~~l 66 (234)
T 1ksk_A 2 SHMRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG--------------NPLAQQHGPRYF 66 (234)
T ss_dssp CCEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT--------------EEECCCCCCCEE
T ss_pred CcccHHHHHHHc-CCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC--------------eEeecCCCCEEE
Confidence 478999999988 47899999999999999999999976899999999998852 147999 99999
Q ss_pred EEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCCCCceEEE
Q 026355 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (240)
Q Consensus 148 vvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr~TSGLLl 227 (240)
|+|||+||+|||.+++ .+||.+.|..++ ..++++|||||++||||||
T Consensus 67 vvnKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll 113 (234)
T 1ksk_A 67 MLNKPQGYVCSTDDPD-HPTVLYFLDEPV--------------------------------AWKLHAAGRLDIDTTGLVL 113 (234)
T ss_dssp EEEECTTCBSSSSCSS-SCBGGGGCCCTT--------------------------------GGGCEESSCCCTTCEEEEE
T ss_pred EEECCCCCEeCCCCCC-CCcHHHHhhhhh--------------------------------cCCeeEcCCCCCCCeeEEE
Confidence 9999999999999875 778877554332 0356789999999999999
Q ss_pred eecCCcccc
Q 026355 228 VAKVIFSPF 236 (240)
Q Consensus 228 ~ak~~~aa~ 236 (240)
||||++++.
T Consensus 114 ~ak~~~~~~ 122 (234)
T 1ksk_A 114 MTDDGQWSH 122 (234)
T ss_dssp EESCHHHHH
T ss_pred EEcCHHHHH
Confidence 999987653
No 3
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=99.95 E-value=1.2e-28 Score=214.25 Aligned_cols=118 Identities=24% Similarity=0.303 Sum_probs=99.4
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEeccCCcccccccCCCceeeecCCc-EEE
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDN-VLV 148 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~~~~~~~~~p~~~~l~Ilyed~~-~lv 148 (240)
.+|||+||++. +.+||+.++++|++|+|+|||+++++++++|.+||.|.+.. ..|+|||++ ++|
T Consensus 2 ~~RLd~~L~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~ed~~~~lv 66 (243)
T 1vio_A 2 SLRLDKFIAEN-VGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED--------------ELLTWIEEGQYFM 66 (243)
T ss_dssp CEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT--------------EECCSSCCCCEEE
T ss_pred CccHHHHHHHc-CCCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec--------------cccccCCCCEEEE
Confidence 37999999988 47899999999999999999999977899999999887742 257999999 999
Q ss_pred EeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCCCCceEEEe
Q 026355 149 VNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228 (240)
Q Consensus 149 vnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr~TSGLLl~ 228 (240)
+|||+||+|||.++. ..|+.+.|..++ ..++++|||||++|||||||
T Consensus 67 vnKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll~ 113 (243)
T 1vio_A 67 LNKPQGCVCSNDDGD-YPTIYQFFDYPL--------------------------------AGKLHSAGRLDVDTTGLVLL 113 (243)
T ss_dssp EEECTTCBSSCCC---CCBGGGGSCTTG--------------------------------GGGCEESSCCCTTCEEEEEE
T ss_pred EECCCCCEeCCCCCC-CCcHHHHHhHHh--------------------------------cCCEeEccCCCCCCeEEEEE
Confidence 999999999998874 678877554332 02467899999999999999
Q ss_pred ecCCccc
Q 026355 229 AKVIFSP 235 (240)
Q Consensus 229 ak~~~aa 235 (240)
|+|+++|
T Consensus 114 ak~~~~a 120 (243)
T 1vio_A 114 TDDGQWS 120 (243)
T ss_dssp ESCHHHH
T ss_pred EECHHHH
Confidence 9998754
No 4
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.94 E-value=3.5e-27 Score=210.31 Aligned_cols=122 Identities=27% Similarity=0.327 Sum_probs=103.9
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEeccCCcccccccCCCceeeecCCcEE
Q 026355 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVL 147 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~~~~~~~~~p~~~~l~Ilyed~~~l 147 (240)
++++|||+||++. +.+||+.++++|++|+|+|||+++ +++++|.+||+|+|.+.... + ..|||++||
T Consensus 4 ~~g~RLdk~La~~-g~~SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~-----~------~~~ed~~~l 70 (290)
T 3dh3_A 4 DSSVRLNKYISES-GICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIE-----P------REAEDLVLI 70 (290)
T ss_dssp CCCEEHHHHHHTT-TSSCHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEEC-----C------CCGGGCCEE
T ss_pred ccchHHHHHHHhC-CCCCHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEecccccc-----c------cccccceEE
Confidence 4689999999998 578999999999999999999999 79999999999999764211 1 148999999
Q ss_pred EEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCCCCceEEE
Q 026355 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (240)
Q Consensus 148 vvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr~TSGLLl 227 (240)
|+|||+||+||+.+.+ ..|+++.|.. ..++++|||||++||||||
T Consensus 71 vvnKP~G~~~~~~~~~-~~tl~~~l~~----------------------------------~~~~~~VhRLD~dTSGLll 115 (290)
T 3dh3_A 71 ALNKPVGIVSTTEDGE-RDNIVDFVNH----------------------------------SKRVFPIGRLDKDSQGLIF 115 (290)
T ss_dssp EEEECTTCBCCCCSSC-TTBHHHHHTC----------------------------------SSCCEESSCCCTTCEEEEE
T ss_pred EEECCCccccCCCCCC-CCcHHHHhhc----------------------------------cCceeeeccCCCCCcceEE
Confidence 9999999999998765 6788887643 1457789999999999999
Q ss_pred eecCCccccC
Q 026355 228 VAKVIFSPFG 237 (240)
Q Consensus 228 ~ak~~~aa~~ 237 (240)
||+|+++++.
T Consensus 116 la~d~~~~~~ 125 (290)
T 3dh3_A 116 LTNHGDLVNK 125 (290)
T ss_dssp EESCTTHHHH
T ss_pred EcCCHHHHHH
Confidence 9999987653
No 5
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=99.75 E-value=8e-19 Score=149.95 Aligned_cols=68 Identities=34% Similarity=0.490 Sum_probs=58.8
Q ss_pred ceeeecCCcEEEEeCCCCceeecCCC-CCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCcccc
Q 026355 137 LDIVYEDDNVLVVNKPAHMVVHPAPG-NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 215 (240)
Q Consensus 137 l~Ilyed~~~lvvnKPaGl~v~p~~~-~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 215 (240)
++|+|||++++|||||+||+||++.+ ....|+.+.|..++ .++++|
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~---------------------------------~~~~~v 58 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---------------------------------PQAESV 58 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC---------------------------------TTCEES
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC---------------------------------CCCcee
Confidence 78999999999999999999999764 45679999887764 235679
Q ss_pred CcCCCCCceEEEeecCCccccC
Q 026355 216 HRLDKGTSGLLVVAKVIFSPFG 237 (240)
Q Consensus 216 hRLDr~TSGLLl~ak~~~aa~~ 237 (240)
||||++||||||||||+++++.
T Consensus 59 hRLD~~TSGlll~ak~~~~~~~ 80 (217)
T 2i82_A 59 HRLDMATSGVIVVALTKAAERE 80 (217)
T ss_dssp SCCCTTCEEEEEEESSHHHHHH
T ss_pred ecCCCCCeEEEEEEeCHHHHHH
Confidence 9999999999999999988754
No 6
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.72 E-value=9.8e-19 Score=146.36 Aligned_cols=66 Identities=21% Similarity=0.141 Sum_probs=52.6
Q ss_pred ceeeecCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccC
Q 026355 137 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 216 (240)
Q Consensus 137 l~Ilyed~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vh 216 (240)
..|+|||++++|||||+||+||+.++....|+.+.|. + .++++||
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~--~---------------------------------~~~~~vh 48 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--V---------------------------------QGVYAAG 48 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC--C---------------------------------SSCEESS
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC--C---------------------------------CCceECC
Confidence 3689999999999999999999998877778765332 0 2467899
Q ss_pred cCCCCCceEEEeecCCccccC
Q 026355 217 RLDKGTSGLLVVAKVIFSPFG 237 (240)
Q Consensus 217 RLDr~TSGLLl~ak~~~aa~~ 237 (240)
|||++||||||||||+++++.
T Consensus 49 RLD~~TSGlll~ak~~~~~~~ 69 (189)
T 2oml_A 49 RLDRDSEGLLVLTNNGALQAR 69 (189)
T ss_dssp CCCTTCEEEEEEESCHHHHHH
T ss_pred CCCCCCeeEEEEEcCHHHHHH
Confidence 999999999999999988754
No 7
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.71 E-value=1.3e-18 Score=148.86 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCceeeecCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccc
Q 026355 135 IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGI 214 (240)
Q Consensus 135 ~~l~Ilyed~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (240)
..+.|+|||++++|||||+||+||+.++....||.+.|. . .++++
T Consensus 30 ~~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~--~---------------------------------~~~~~ 74 (217)
T 2olw_A 30 TRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--V---------------------------------QGVYA 74 (217)
T ss_dssp -------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC--C---------------------------------CSCEE
T ss_pred ccCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC--c---------------------------------CCceE
Confidence 456899999999999999999999998877778765332 0 24678
Q ss_pred cCcCCCCCceEEEeecCCccccC
Q 026355 215 VHRLDKGTSGLLVVAKVIFSPFG 237 (240)
Q Consensus 215 VhRLDr~TSGLLl~ak~~~aa~~ 237 (240)
|||||++||||||||||+++++.
T Consensus 75 VhRLDr~TSGllllAk~~~~~~~ 97 (217)
T 2olw_A 75 AGRLDRDSEGLLVLTNNGALQAR 97 (217)
T ss_dssp SSCCCTTCEEEEEEESCHHHHHH
T ss_pred CCCCCCCCeeEEEEEcCHHHHHH
Confidence 99999999999999999988754
No 8
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=99.69 E-value=1.5e-17 Score=143.09 Aligned_cols=69 Identities=38% Similarity=0.515 Sum_probs=57.2
Q ss_pred eeeecCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCc
Q 026355 138 DIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 217 (240)
Q Consensus 138 ~Ilyed~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhR 217 (240)
.|+|||++++|||||+||+|||+.+ ...++.+.|..++. ...++++|||
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~------------------------------~~~~~~~VhR 51 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRP------------------------------EARFLELVHR 51 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHST------------------------------TCSCCEESSC
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcC------------------------------CCCccceEec
Confidence 5899999999999999999999766 45688887766531 1135778999
Q ss_pred CCCCCceEEEeecCCccccC
Q 026355 218 LDKGTSGLLVVAKVIFSPFG 237 (240)
Q Consensus 218 LDr~TSGLLl~ak~~~aa~~ 237 (240)
||++||||||||||+++++.
T Consensus 52 LD~~TSGlll~ak~~~~~~~ 71 (228)
T 1v9k_A 52 LDRDTSGVLLVAKKRSALRS 71 (228)
T ss_dssp CCTTCEEEEEEESSHHHHHH
T ss_pred CCCCCeEEEEEEeCHHHHHH
Confidence 99999999999999987753
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.46 E-value=1.5e-14 Score=125.24 Aligned_cols=60 Identities=27% Similarity=0.288 Sum_probs=49.3
Q ss_pred CCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCCCC
Q 026355 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (240)
Q Consensus 143 d~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr~T 222 (240)
+++|||+|||+|++||+.+. ...||++.|.. ..++++|||||++|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~----------------------------------~~rl~~VgRLD~dT 57 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH----------------------------------SKRVFPIGRLDKDS 57 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC----------------------------------SSCCEEESCCCTTC
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc----------------------------------cCCeeEecCCCCCC
Confidence 56799999999999999776 46788775421 13578899999999
Q ss_pred ceEEEeecCCccccC
Q 026355 223 SGLLVVAKVIFSPFG 237 (240)
Q Consensus 223 SGLLl~ak~~~aa~~ 237 (240)
|||||||+|+++++.
T Consensus 58 SGLLLlT~dg~~a~~ 72 (237)
T 2gml_A 58 QGLIFLTNHGDLVNK 72 (237)
T ss_dssp EEEEEEESCHHHHHH
T ss_pred eeEEEEEcCHHHHHH
Confidence 999999999987753
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=99.02 E-value=4.2e-11 Score=88.66 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=58.0
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEeccCCccc-c-------cccCCCceeeec
Q 026355 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLR-A-------EAEDIPLDIVYE 142 (240)
Q Consensus 71 ~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~~~~~~~-~-------~p~~~~l~Ilye 142 (240)
+|||+||++.+...||+.++++|++|.|+|||+++ +++++|++||.|+|......... . .+....+.++||
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lye 79 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIA 79 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEE
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHH
Confidence 58999999874345999999999999999999998 78999999999999765432111 1 122234789999
Q ss_pred CCcE
Q 026355 143 DDNV 146 (240)
Q Consensus 143 d~~~ 146 (240)
|.++
T Consensus 80 d~~~ 83 (92)
T 2k6p_A 80 PKTK 83 (92)
T ss_dssp ECCC
T ss_pred hcCC
Confidence 9864
No 11
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.97 E-value=5.1e-10 Score=88.65 Aligned_cols=57 Identities=28% Similarity=0.268 Sum_probs=50.8
Q ss_pred CCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEecc
Q 026355 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124 (240)
Q Consensus 67 ~~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~~ 124 (240)
.++++|||+||+..+...||+.++++|..|+|+|||+++ ++++.|++||+|.|....
T Consensus 5 ~~~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~ 61 (133)
T 1dm9_A 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 (133)
T ss_dssp CTTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETT
T ss_pred cccchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCC
Confidence 356899999999874457999999999999999999998 799999999999998753
No 12
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.80 E-value=4.1e-09 Score=85.84 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=50.4
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEec
Q 026355 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~ 123 (240)
..++|||++|.+.....||+.++++|..|+|+|||+++++++++|.+||.|+|...
T Consensus 48 ~le~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~ 103 (159)
T 1c05_A 48 LLESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREK 103 (159)
T ss_dssp HHHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGG
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCc
Confidence 34689999999886567999999999999999999999889999999999999764
No 13
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.76 E-value=2.9e-09 Score=90.37 Aligned_cols=81 Identities=21% Similarity=0.168 Sum_probs=61.9
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEeccCCcccccccCCCceeeecCCcEEE
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 148 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~~~~~~~~~p~~~~l~Ilyed~~~lv 148 (240)
.++|||++|++.....||+.++++|..|+|+|||+++++++++|++||+|+|........ .-..++.
T Consensus 97 le~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~r~~~-------------~~~~~l~ 163 (209)
T 2vqe_D 97 LESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLE-------------LIRQNLE 163 (209)
T ss_dssp HHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCH-------------HHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCcccchH-------------HHHHHHH
Confidence 468999999987556799999999999999999999988999999999999976421110 0012233
Q ss_pred Ee---CCCCceeecCCC
Q 026355 149 VN---KPAHMVVHPAPG 162 (240)
Q Consensus 149 vn---KPaGl~v~p~~~ 162 (240)
.| ||+|.++...+.
T Consensus 164 ~~~~~kp~g~l~~d~~~ 180 (209)
T 2vqe_D 164 AMKGRKVGPWLSLDVEG 180 (209)
T ss_dssp HTTTCCCCTTCCEETTT
T ss_pred hcCCCCCCCeEEEeccc
Confidence 34 899988765544
No 14
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.75 E-value=1.5e-09 Score=78.19 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=48.2
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEe
Q 026355 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
.+++|||+||++.....||++++++|++|+|+|||+++++++++|.+||.|++.+
T Consensus 18 ~~~~RLdk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~ 72 (79)
T 1p9k_A 18 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 72 (79)
T ss_dssp CSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETT
T ss_pred CCCchHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECC
Confidence 4569999999998322399999999999999999999988999999999998854
No 15
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=3e-08 Score=70.16 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=45.8
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecC--CCEEEE
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKG--GDMVNC 120 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~--GD~I~v 120 (240)
..|||++|.+....-||+.++++|..|+|+|||++++++++.|.+ +|.|.+
T Consensus 7 ~~RLD~~l~~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~ 59 (71)
T 2cqj_A 7 GRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTW 59 (71)
T ss_dssp EEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEE
T ss_pred HHHHHHHHHHhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEE
Confidence 469999999986555999999999999999999999999999998 677765
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=98.42 E-value=3.2e-08 Score=83.57 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=49.7
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEec
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~ 123 (240)
.++|||+||++.....||+.++++|..|+|+|||++++++++.|++||+|+|...
T Consensus 93 le~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~ 147 (205)
T 3r8n_D 93 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 147 (205)
T ss_dssp HHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSS
T ss_pred hHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCc
Confidence 3689999999875567999999999999999999999889999999999998654
No 17
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.39 E-value=2e-07 Score=82.77 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=50.2
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECC-E-EeeeccceecCCCEEEEEecc
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSING-Q-VVSKVSHNVKGGDMVNCTISE 124 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG-~-~v~~~~~~L~~GD~I~v~~~~ 124 (240)
.++|||+||++.....||++++++|++|+|+||| + ++++++++|.+||.|+|.+..
T Consensus 5 ~~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g~~ 62 (291)
T 3hp7_A 5 PKERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGEK 62 (291)
T ss_dssp CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTCC
T ss_pred chhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcccc
Confidence 3689999999986567999999999999999999 8 788999999999999997643
No 18
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.39 E-value=1e-07 Score=80.32 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=49.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEec
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~ 123 (240)
.+|||++|.+.....||+.++++|..|+|+|||++++.+++.|++||+|+|...
T Consensus 88 e~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDE 141 (201)
T ss_dssp HSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSS
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccc
Confidence 479999999885556999999999999999999999899999999999999754
No 19
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.20 E-value=5.4e-07 Score=74.56 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=47.5
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCC--CEEEEEe
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG--DMVNCTI 122 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~G--D~I~v~~ 122 (240)
.+|||++|.+.....||+.++++|..|+|+|||++|+++++.|.+| |.|.|..
T Consensus 102 e~RLD~~L~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~ 156 (180)
T 3j20_D 102 ERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYAR 156 (180)
T ss_dssp HTSHHHHHHHHTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSS
T ss_pred hhhhhheeecCcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeC
Confidence 5799999988754559999999999999999999999999999999 8888843
No 20
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=98.14 E-value=9.5e-07 Score=73.23 Aligned_cols=54 Identities=15% Similarity=0.050 Sum_probs=46.6
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEe
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
-.+|||++|.+.....||..++++|..|+|.|||++|+++++.|.+||.+.|.+
T Consensus 105 le~RLD~vL~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v 158 (181)
T 2xzm_D 105 MERRLQTRVFKLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDF 158 (181)
T ss_dssp HTTBHHHHHHHTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEEC
T ss_pred hccchhHHHHhccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEE
Confidence 458999999987545599999999999999999999999999999998544443
No 21
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.92 E-value=2.3e-06 Score=71.59 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=45.2
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCC--EEEE
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD--MVNC 120 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD--~I~v 120 (240)
.+|||.+|.+....-||..++++|..|+|+|||++|+++++.|.+|+ .|.+
T Consensus 106 e~RLD~~L~r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~ 158 (197)
T 3u5c_J 106 ERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDF 158 (197)
T ss_dssp TTSHHHHHHHSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBC
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEE
Confidence 47999999998545599999999999999999999999999999995 4554
No 22
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.42 E-value=5.1e-07 Score=75.49 Aligned_cols=56 Identities=18% Similarity=0.054 Sum_probs=48.7
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEec
Q 026355 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~ 123 (240)
--.+|||.+|.+....-||..++++|..|+|+|||++|++|++.|.+||++.|.+.
T Consensus 106 ~le~RLD~~L~r~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~ 161 (195)
T 3iz6_C 106 FLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFS 161 (195)
T ss_dssp CTTSCCCSSCCCCCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSS
T ss_pred HHHhhhhHHHHhccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEec
Confidence 34589999999874344999999999999999999999999999999998877653
No 23
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.07 E-value=0.0011 Score=56.99 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=49.2
Q ss_pred CccchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEe
Q 026355 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~-~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
.+.+.|--||...+.. .+++++++++.+|.|+|||++++.+++.+..+|+|+|..
T Consensus 40 ~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~k 95 (243)
T 3j20_E 40 RTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPE 95 (243)
T ss_dssp TTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETT
T ss_pred ccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecc
Confidence 4467899999998764 589999999999999999999999999999999999853
No 24
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=96.88 E-value=0.0016 Score=54.94 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=47.3
Q ss_pred CccchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEE
Q 026355 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~-~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
.+.+.|--||...+.. .+++++++++.+|.|+|||++++.+++.+..+|+|++
T Consensus 5 ~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 5 DQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp CSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred hhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 3467788899987653 5899999999999999999999999999999999999
No 25
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=95.15 E-value=0.018 Score=51.26 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=40.2
Q ss_pred CcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCCCCc
Q 026355 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (240)
Q Consensus 144 ~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr~TS 223 (240)
+-++++|||+||-+|. +++.+.+.+. ..+.+..+.||-..|
T Consensus 3 ~Gil~vdKP~G~TS~~--------vv~~vrr~l~-------------------------------~kKvGH~GTLDP~At 43 (309)
T 1r3e_A 3 HGILVAYKPKGPTSHD--------VVDEVRKKLK-------------------------------TRKVGHGGTLDPFAC 43 (309)
T ss_dssp CEEEEEEECSSSCHHH--------HHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHHH--------HHHHHHHHhc-------------------------------cceecccccCCCCcc
Confidence 3489999999988654 7888888763 156788999999999
Q ss_pred eEEEeecCC
Q 026355 224 GLLVVAKVI 232 (240)
Q Consensus 224 GLLl~ak~~ 232 (240)
|||+++-..
T Consensus 44 GvL~i~iG~ 52 (309)
T 1r3e_A 44 GVLIIGVNQ 52 (309)
T ss_dssp EEEEEEEGG
T ss_pred eeEEEEECH
Confidence 999998544
No 26
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=94.90 E-value=0.022 Score=50.70 Aligned_cols=51 Identities=27% Similarity=0.383 Sum_probs=40.9
Q ss_pred CCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCCCC
Q 026355 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (240)
Q Consensus 143 d~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr~T 222 (240)
.+-++++|||.||-+|. +++.+.+.+. ..+++..+.||-..
T Consensus 5 ~~Gil~vdKP~G~TS~d--------vv~~vrr~l~-------------------------------~kKvGH~GTLDP~A 45 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSHD--------VVGRCRRIFA-------------------------------TRRVGHAGTLDPMA 45 (316)
T ss_dssp CSEEEEEEECTTCCHHH--------HHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred CCeEEEEECCCCCCHHH--------HHHHHHHHhc-------------------------------cccccccccCCCCC
Confidence 35699999999988643 7888888763 25678899999999
Q ss_pred ceEEEeecCC
Q 026355 223 SGLLVVAKVI 232 (240)
Q Consensus 223 SGLLl~ak~~ 232 (240)
||||+++-..
T Consensus 46 tGvL~i~iG~ 55 (316)
T 1sgv_A 46 TGVLVIGIER 55 (316)
T ss_dssp EEEEEEEEGG
T ss_pred eEEEEEEECH
Confidence 9999998643
No 27
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=94.87 E-value=0.023 Score=50.88 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=40.0
Q ss_pred CcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCCCCc
Q 026355 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (240)
Q Consensus 144 ~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr~TS 223 (240)
+-+++||||+||-+|. +++.+.+.+. ..+++..+.||-..|
T Consensus 25 ~Gil~vdKP~G~TS~d--------vv~~vr~~l~-------------------------------~kKvGH~GTLDP~At 65 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSND--------ALQKVKRIYN-------------------------------ANRAGHTGALDPLAT 65 (327)
T ss_dssp CEEEEEEECTTCCHHH--------HHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHHH--------HHHHHHHhhc-------------------------------cceeccCCCCCCCCe
Confidence 4599999999987643 7788887763 256778999999999
Q ss_pred eEEEeecCC
Q 026355 224 GLLVVAKVI 232 (240)
Q Consensus 224 GLLl~ak~~ 232 (240)
|||+++-..
T Consensus 66 GvL~i~~G~ 74 (327)
T 1k8w_A 66 GMLPICLGE 74 (327)
T ss_dssp EEEEEEEGG
T ss_pred eEEEEEECH
Confidence 999998643
No 28
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=94.82 E-value=0.024 Score=50.94 Aligned_cols=52 Identities=27% Similarity=0.215 Sum_probs=41.4
Q ss_pred ecCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCC
Q 026355 141 YEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDK 220 (240)
Q Consensus 141 yed~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr 220 (240)
|-.+-+|++|||+|+-+|. +++.+.+.+. ..+.+..+-||-
T Consensus 43 ~~~~Gil~vdKP~g~tS~~--------vv~~vr~~~~-------------------------------~~KvGH~GTLDP 83 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSHE--------VVAWIKRILN-------------------------------LEKAGHGGTLDP 83 (334)
T ss_dssp HHHTEEEEEEECSSSCHHH--------HHHHHHHHTT-------------------------------CSCEEESSCCCT
T ss_pred hccCcEEEEECCCCCCHHH--------HHHHHHHHhC-------------------------------cceeccccccCC
Confidence 4446799999999987643 7788887763 146788999999
Q ss_pred CCceEEEeecC
Q 026355 221 GTSGLLVVAKV 231 (240)
Q Consensus 221 ~TSGLLl~ak~ 231 (240)
..||||+++-.
T Consensus 84 ~atGvL~v~~g 94 (334)
T 2aus_C 84 KVSGVLPVALE 94 (334)
T ss_dssp TCEEEEEEEEG
T ss_pred ccceeEEEEeC
Confidence 99999999864
No 29
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=94.38 E-value=0.079 Score=45.80 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=46.4
Q ss_pred CccchHHHHHHhccCC-CCHHHHHHHHHc--CceEECCEEeeeccceecCCCEEEEEe
Q 026355 68 AGKLRLDAWISSRIDG-ISRARVQSSIRS--GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~-~SR~~~~klI~~--G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
.+.+.|--||...+.. .+.+++++.+.+ |.|+|||++.+...+.+---|+|+|..
T Consensus 39 ~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~k 96 (260)
T 2xzm_W 39 RESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEK 96 (260)
T ss_dssp SSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGG
T ss_pred ceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcC
Confidence 3467899999988754 588999999999 999999999987778887779998853
No 30
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=94.29 E-value=0.037 Score=50.11 Aligned_cols=53 Identities=25% Similarity=0.201 Sum_probs=42.0
Q ss_pred ecCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCC
Q 026355 141 YEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDK 220 (240)
Q Consensus 141 yed~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr 220 (240)
|-.+-+|++|||+|+-+|. +++.+.+.+. ..+.+..+-||-
T Consensus 63 ~~~~Gil~vdKP~G~TS~~--------vv~~vr~~l~-------------------------------~~KvGH~GTLDP 103 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSHE--------VSTWVKKILN-------------------------------LDKAGHGGTLDP 103 (357)
T ss_dssp HHHTEEEEEEECSSSCHHH--------HHHHHHHHTT-------------------------------CSCEEESSCCCT
T ss_pred hccCcEEEEECCCCCCHHH--------HHHHHHHHhC-------------------------------ccccccccccCC
Confidence 4446799999999988643 7788887763 146788999999
Q ss_pred CCceEEEeecCC
Q 026355 221 GTSGLLVVAKVI 232 (240)
Q Consensus 221 ~TSGLLl~ak~~ 232 (240)
..||||+++-..
T Consensus 104 ~AtGvL~v~~G~ 115 (357)
T 2apo_A 104 KVTGVLPVALER 115 (357)
T ss_dssp TCEEEEEEEEGG
T ss_pred CceeEEEEEeCH
Confidence 999999998743
No 31
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.15 E-value=0.036 Score=48.05 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=43.4
Q ss_pred ccchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEe
Q 026355 69 GKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~-~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
+.+.|--||...+.. .+.+++++.+.+|.|+|||++.+...+.+---|+|+|..
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~k 94 (265)
T 3iz6_D 40 ECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPK 94 (265)
T ss_dssp ---CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCS
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcC
Confidence 357788899987654 577999999999999999999987777777779999854
No 32
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=93.68 E-value=0.052 Score=49.85 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=42.2
Q ss_pred ecCCcEEEEeCCCCceeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccCcCCC
Q 026355 141 YEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDK 220 (240)
Q Consensus 141 yed~~~lvvnKPaGl~v~p~~~~~~~Tl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VhRLDr 220 (240)
|-.+-+|++|||+|+-+|. +++.+.+.+. ..+.+..+-||-
T Consensus 56 ~~~~Gil~ldKP~G~TS~d--------vv~~vrr~l~-------------------------------~kKvGH~GTLDP 96 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSHE--------VVAWIKRILR-------------------------------CEKTGHSGTLDP 96 (400)
T ss_dssp HHHTEEEEEEECSSSCHHH--------HHHHHHHHHT-------------------------------CSCEEESSCCCT
T ss_pred hccCcEEEEECCCCCCHHH--------HHHHHHHHhC-------------------------------cCcccccCCCCC
Confidence 4446799999999988654 7778887763 256788999999
Q ss_pred CCceEEEeecCC
Q 026355 221 GTSGLLVVAKVI 232 (240)
Q Consensus 221 ~TSGLLl~ak~~ 232 (240)
..||||+++-..
T Consensus 97 ~AtGvL~v~iG~ 108 (400)
T 3u28_A 97 KVTGCLIVCIDR 108 (400)
T ss_dssp TCEEEEEEEEGG
T ss_pred CCeEEEEEEECh
Confidence 999999998643
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=93.61 E-value=0.037 Score=47.90 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=47.1
Q ss_pred CccchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEe
Q 026355 68 AGKLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~-~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
.+.+.|--||...+.. .+.+++++.+.+|.|+|||++.+...+.+---|+|+|..
T Consensus 39 ~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~k 94 (261)
T 3u5c_E 39 RESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDA 94 (261)
T ss_dssp GGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETT
T ss_pred hhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcC
Confidence 3467899999998764 478999999999999999999988888888889999943
No 34
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=92.89 E-value=0.019 Score=53.15 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEE
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I 118 (240)
+..|.++|.......|+++++++|.+|.|+|||++++..+..+.++|.+
T Consensus 352 ~i~l~~lL~~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHHcCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 4578889987644569999999999999999999998888888887654
No 35
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=92.50 E-value=0.22 Score=46.19 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=40.7
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCC
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD 116 (240)
+..+-++|.......|+++++++|.+|.|+|||.+++.++..+..++
T Consensus 368 ~~~~~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 368 RIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred cCcHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 56788888876446799999999999999999999988888887765
No 36
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=90.42 E-value=0.62 Score=32.16 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=35.3
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcC--ceEECCEEeeeccceecCCCEEEEEe
Q 026355 68 AGKLRLDAWISSRIDGISRARVQSSIRSG--LVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~~SR~~~~klI~~G--~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
.++.++..++.... ... ..+++++..+ .|.|||+.+. .+..|+.||+|.+..
T Consensus 23 ~~~~tv~~ll~~L~-~~~-p~~~~~l~~~~~~v~vN~~~v~-~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMA-AQS-DRWALALEDGKLLAAVNQTLVS-FDHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHH-TTC-HHHHHHHCCTTCEEEETTEECC-TTCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHH-HHC-hhHHHHhcCCCEEEEECCEECC-CCCCCCCCCEEEEeC
Confidence 34567777666542 111 3455666544 4889999994 789999999998853
No 37
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=90.14 E-value=0.53 Score=37.94 Aligned_cols=37 Identities=11% Similarity=-0.099 Sum_probs=31.1
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEee
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVS 106 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~ 106 (240)
+..|-++|.......|+++++++|.+|.|+|||.++.
T Consensus 49 g~~ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~kv~ 85 (164)
T 2ktl_A 49 DKTFSKVLWSAGLVASKSEGQRIINNNGAYVGSRPGV 85 (164)
T ss_dssp SCSHHHHHHHHTSCSTHHHHHHHHHHTCEEEEECCSC
T ss_pred CCcHHHHHHHhCcccCHHHHHHHHHhCCEEECCEecc
Confidence 5568888887644669999999999999999998773
No 38
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=90.11 E-value=0.22 Score=46.13 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=37.4
Q ss_pred hHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCC
Q 026355 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGG 115 (240)
Q Consensus 72 RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~G 115 (240)
.|-++|.......|+++++++|.+|.|+|||++++.++..+..+
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~ 400 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSS 400 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGG
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEccChhcccChh
Confidence 68888887644569999999999999999999998877777654
No 39
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=87.40 E-value=0.11 Score=47.97 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCE
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDM 117 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~ 117 (240)
+..|-++|.......|+++++++|.+|.|+|||++++.++..+.++|.
T Consensus 351 ~~~~~~~l~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 398 (419)
T 2ts1_A 351 DVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 398 (419)
T ss_dssp ------------------------------------------------
T ss_pred cccHHHHHHHhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhc
Confidence 456777887664456999999999999999999999887777776654
No 40
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=77.41 E-value=0.25 Score=36.41 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=35.7
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEec
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~ 123 (240)
+|.++...|... ++....-+--+....|-|||+.+ ..++.|+.||+|+|+.+
T Consensus 34 ~g~TV~daI~~~--gi~~~~peIdl~~~~V~Vng~~v-~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 34 EGITVQTAITQS--GILSQFPEIDLSTNKIGIFSRPI-KLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp TTCBHHHHHHHH--THHHHCTTCCTTTSEEEEEECSC-CTTCBCCTTCEEEECCC
T ss_pred CCCcHHHHHHHc--CCCccCCcccccccEEEEcCEEC-CCCccCCCCCEEEEEec
Confidence 577888888875 22211100011245799999999 58999999999999754
No 41
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=77.40 E-value=2.7 Score=35.52 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=31.3
Q ss_pred HcCceEECCEEeeeccceec-CCCEEEEEeccCCcccccccCCCceeeecCCcEEEE
Q 026355 94 RSGLVSINGQVVSKVSHNVK-GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149 (240)
Q Consensus 94 ~~G~V~VNG~~v~~~~~~L~-~GD~I~v~~~~~~~~~~~p~~~~l~Ilyed~~~lvv 149 (240)
.+|.|+|||+.++ ....|+ .||+|.|.. +.+.+..++++|+
T Consensus 133 ~ngtvyvNg~~i~-~~~~L~~~GD~I~ig~--------------~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 133 KNTDVYINYELQE-QLTNKAYIGDHIYVEG--------------IWLEVQADGLNVL 174 (238)
T ss_dssp TTCCEEETTEECC-SSEEEEETTCEEEETT--------------EEEEECSSEEEEE
T ss_pred CCCCEEECCEEec-cceeccCCcCEEEECC--------------EEEEEECCEEEEE
Confidence 3778999999995 456899 999999833 3566667777764
No 42
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=76.65 E-value=2.6 Score=28.56 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.5
Q ss_pred ceEECCEEeeeccceecCCCEEEEEe
Q 026355 97 LVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 97 ~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
.|.|||+.+. .+..|+.||+|.+..
T Consensus 48 ~v~vNg~~v~-~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSDFIQPNDTVALIP 72 (77)
T ss_dssp EEEETTEEEC-TTSEECTTCEEEEEC
T ss_pred EEEECCEECC-CCCCcCCCCEEEEEC
Confidence 5899999995 689999999998853
No 43
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=72.99 E-value=3 Score=29.22 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.2
Q ss_pred CceEECCEEeeeccceecCCCEEEEEe
Q 026355 96 GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 96 G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
-.|.|||+.+. .++.|+.||+|.+..
T Consensus 59 ~~v~VN~~~v~-~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 59 INVLRNGEAAA-LGEATAAGDELALFP 84 (89)
T ss_dssp SEEEETTEECC-TTSBCCTTCEEEEEC
T ss_pred EEEEECCEECC-CCcccCCCCEEEEEC
Confidence 36889999994 789999999998854
No 44
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=71.91 E-value=2.5 Score=28.75 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=32.4
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEe
Q 026355 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 70 g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
+.++..++.... ... .+++.+..-.|.|||+.+...+..|+.||+|.+-.
T Consensus 20 ~~tv~~ll~~L~-~~~--~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 20 ANDLKELRAILQ-EKE--GLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp CSSHHHHHHHHH-TCT--TTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred CCcHHHHHHHHH-HCc--CHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 455665555431 111 12333456678999999656889999999998854
No 45
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=68.97 E-value=4.5 Score=26.66 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=31.9
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeee---ccceecCCCEEEEEe
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSK---VSHNVKGGDMVNCTI 122 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~---~~~~L~~GD~I~v~~ 122 (240)
++.++..+|... ...+ ..=.|.|||+.+.. .+..|+.||+|.+-.
T Consensus 12 ~~~tv~~ll~~l--~~~~-------~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 12 EGKTLKEVLEEM--GVEL-------KGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTCCHHHHHHHH--TBCG-------GGEEEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred CCCcHHHHHHHc--CCCC-------CcEEEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 457888888875 3332 12248899999953 237899999999854
No 46
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=68.53 E-value=1.7 Score=29.95 Aligned_cols=43 Identities=26% Similarity=0.479 Sum_probs=31.6
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEE
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~ 121 (240)
++.++..+|... .++ ...=.|.|||+.+. .+..|+.||+|.|.
T Consensus 29 ~~~Tv~dLl~~L--~~~-------~~~v~VavNg~~v~-~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 29 EGMKVRDILRAV--GFN-------TESAIAKVNGKVVL-EDDEVKDGDFVEVI 71 (77)
T ss_dssp SSCCHHHHHHTT--TCS-------SCSSCEEETTEEEC-SSSCCCSSCCCBCS
T ss_pred CCCcHHHHHHHh--CCC-------CcCEEEEECCEECC-CCCCcCCCCEEEEE
Confidence 457899888875 232 12225899999995 67999999999874
No 47
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=67.54 E-value=5.6 Score=26.76 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=31.9
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEe
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
++.++..+|.+. .+.. ..=.|.+||..+. .+..|+.||+|.+..
T Consensus 22 ~~~tv~~Ll~~l--~~~~-------~~v~vavN~~~v~-~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 22 APRRIKDVLGEL--EIPI-------ETVVVKKNGQIVI-DEEEIFDGDIIEVIR 65 (70)
T ss_dssp SCCBHHHHHHHT--TCCT-------TTEEEEETTEECC-TTSBCCTTCEEEEEE
T ss_pred CCCcHHHHHHHh--CCCC-------CCEEEEECCEECC-CcccCCCCCEEEEEe
Confidence 357899988875 2331 1113889999995 677999999999854
No 48
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=66.13 E-value=5 Score=30.49 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.3
Q ss_pred CceEECCEEeeeccceecCCCEEEE
Q 026355 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 96 G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
..++|||++++ ....|+.||+|.+
T Consensus 90 ngt~VNG~~V~-~~~~L~~GD~I~l 113 (124)
T 3fm8_A 90 TRTFVNGSSVS-SPIQLHHGDRILW 113 (124)
T ss_dssp CCEEETTEECC-SCEEECTTCEEEE
T ss_pred CCEEECCEEcC-CcEECCCCCEEEE
Confidence 46999999995 4588999999987
No 49
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=65.34 E-value=5.4 Score=28.46 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=32.0
Q ss_pred cc-chHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeec---cceecCCCEEEEEe
Q 026355 69 GK-LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (240)
Q Consensus 69 ~g-~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~---~~~L~~GD~I~v~~ 122 (240)
++ .++..+|.+. .+.. ..=.|.|||+.+.+. +..|+.||+|+|..
T Consensus 34 ~~~~Tv~dLL~~L--~~~~-------~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 34 KDTGTIQDLLASY--QLEN-------KIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp SSCCBHHHHHHHT--TCTT-------SCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CCCCcHHHHHHHh--CCCC-------CCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 44 7899999875 3331 122478999999543 57899999999854
No 50
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=64.71 E-value=4.8 Score=28.09 Aligned_cols=24 Identities=21% Similarity=0.589 Sum_probs=20.9
Q ss_pred eEECCEEeeeccceecCCCEEEEEe
Q 026355 98 VSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 98 V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
.+|||+.+ ..++.|+.||+|+|..
T Consensus 44 AkVNG~~v-~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 44 AKVDGRIV-PIDYKVKTGEIIDVLT 67 (78)
T ss_dssp EEETTEEE-CTTCBCCTTCBEEEEE
T ss_pred EEECCEEc-CCCcccCCCCEEEEEc
Confidence 57899999 5889999999998864
No 51
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=64.61 E-value=3.3 Score=28.43 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=32.9
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeec---cceecCCCEEEEEe
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~---~~~L~~GD~I~v~~ 122 (240)
++.+|..+|.+. .+.. +.=.|.+||..+.+. +..|+.||+|+|-.
T Consensus 13 ~~~Tl~~LL~~l--~~~~-------~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 13 QSASVAALMTEL--DCTG-------GHFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCSBHHHHHHHT--TCCS-------SSCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred CCCcHHHHHHHc--CCCC-------CcEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 468999999975 3432 122488999998543 57899999999854
No 52
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=64.59 E-value=5.7 Score=28.01 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.4
Q ss_pred ceEECCEEeee---ccceecCCCEEEEEe
Q 026355 97 LVSINGQVVSK---VSHNVKGGDMVNCTI 122 (240)
Q Consensus 97 ~V~VNG~~v~~---~~~~L~~GD~I~v~~ 122 (240)
.|.|||+.+.. .+..|+.||+|.+-.
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 57899999953 578999999998854
No 53
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=64.10 E-value=3.3 Score=29.74 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.9
Q ss_pred ceEECCEEeeeccceecCCCEEEEE
Q 026355 97 LVSINGQVVSKVSHNVKGGDMVNCT 121 (240)
Q Consensus 97 ~V~VNG~~v~~~~~~L~~GD~I~v~ 121 (240)
.|.|||+.+. .+..|+.||+|.|.
T Consensus 69 ~v~VNg~~v~-~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 69 NIAVNGRYVS-WDEELKDGDVVGVF 92 (98)
T ss_dssp EEEETTBCCC-TTCBCCTTCEEEEE
T ss_pred EEEECCEECC-CCCCCCCCCEEEEE
Confidence 4889999994 78999999999884
No 54
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=63.26 E-value=3.6 Score=28.64 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=32.8
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeec---cceecCCCEEEEEe
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~---~~~L~~GD~I~v~~ 122 (240)
++.+|..+|.+. .+.+ .+.=.|.|||..+.+. +..|+.||+|+|..
T Consensus 16 ~~~Tl~~LL~~l--~~~~------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 16 ESLNVTELLSAL--KVAQ------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp SCEEHHHHHHHH--TCSC------TTTCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred CCCcHHHHHHHc--CCCC------CCcEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 468899999976 3331 1122488999999543 47899999999853
No 55
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=61.01 E-value=3.8 Score=27.20 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=31.5
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeec---cceecCCCEEEEEe
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~---~~~L~~GD~I~v~~ 122 (240)
++.++..+|... ...+ ..=.|.|||+.+.+. +..|+.||+|.+-.
T Consensus 14 ~~~tv~~ll~~l--~~~~-------~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 14 AGQTVHELLEQL--DQRQ-------AGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp TTCCHHHHHHHH--TCCC-------SSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred CCCcHHHHHHHc--CCCC-------CCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 467888888875 2331 111378999999532 67899999998854
No 56
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=60.15 E-value=6.7 Score=31.77 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.3
Q ss_pred CceEECCEEeeeccceecCCCEEEE
Q 026355 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 96 G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
..++|||.+|+ ....|+.||+|.+
T Consensus 140 a~t~VNG~~I~-~~~~L~~GDrI~l 163 (184)
T 4egx_A 140 ADTYVNGKKVT-EPSILRSGNRIIM 163 (184)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEE
T ss_pred CeEEEcCEEcc-ccEEcCCCCEEEE
Confidence 46999999996 4588999999976
No 57
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=59.44 E-value=7.3 Score=30.48 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=20.6
Q ss_pred cCceEECCEEeeeccceecCCCEEEE
Q 026355 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 95 ~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
...++|||++++ ....|+.||+|.+
T Consensus 109 ~ngt~VNG~~i~-~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 109 GADTYVNGKKVT-EPSILRSGNRIIM 133 (154)
T ss_dssp TCCEEETTEECC-SCEECCTTCEEEE
T ss_pred CCceEECCEEcC-CceECCCCCEEEE
Confidence 346999999995 4578999999987
No 58
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=54.06 E-value=5.5 Score=27.65 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=20.7
Q ss_pred ceEECCEEeee---ccceecCCCEEEEE
Q 026355 97 LVSINGQVVSK---VSHNVKGGDMVNCT 121 (240)
Q Consensus 97 ~V~VNG~~v~~---~~~~L~~GD~I~v~ 121 (240)
.|.|||+.+.. .+..|+.||+|.|-
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 58899998852 67889999999884
No 59
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=53.62 E-value=11 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.6
Q ss_pred ceEECCEEee---eccceecCCCEEEEEe
Q 026355 97 LVSINGQVVS---KVSHNVKGGDMVNCTI 122 (240)
Q Consensus 97 ~V~VNG~~v~---~~~~~L~~GD~I~v~~ 122 (240)
.|.||++-+. ..++.|+.||+|.+-.
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 3889999764 3678999999998843
No 60
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=52.29 E-value=9.6 Score=25.22 Aligned_cols=47 Identities=17% Similarity=0.043 Sum_probs=30.3
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEec
Q 026355 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (240)
Q Consensus 69 ~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~ 123 (240)
.|.++..++... +.....+ .=.+.|||+.+ ..++.|..||.|++...
T Consensus 17 ~g~T~~dla~~i----~~~l~~~---~vaa~vNg~lv-dl~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 17 QGATALDFAYSL----HSDLGDH---CIGAKVNHKLV-PLSYVLNSGDQVEVLSS 63 (73)
T ss_dssp TTCBHHHHHHHH----CSHHHHT---EEEEEETTEEC-CTTCBCCSSSBEEEEEC
T ss_pred CCCcHHHHHHHH----hhccccc---eEEEEECCEEe-CCCcCcCCCCEEEEEEC
Confidence 367777776653 1111111 12357899999 47899999999887543
No 61
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=48.89 E-value=10 Score=28.09 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=19.5
Q ss_pred eEECCEEee---eccceecCCCEEEEE
Q 026355 98 VSINGQVVS---KVSHNVKGGDMVNCT 121 (240)
Q Consensus 98 V~VNG~~v~---~~~~~L~~GD~I~v~ 121 (240)
|.|||+-+. ..++.|+.||+|.+-
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEEe
Confidence 789998773 467899999998874
No 62
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=48.00 E-value=9.8 Score=28.20 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.3
Q ss_pred cCceEECCEEeeeccceecCCCEEEE
Q 026355 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 95 ~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
.+.++|||+++. ....|+.||+|.+
T Consensus 79 ~ngt~vNg~~i~-~~~~L~~GD~I~i 103 (120)
T 1wln_A 79 DAETYVDGQRIS-ETTMLQSGMRLQF 103 (120)
T ss_dssp SSCEEETSCBCS-SCEEECTTCEEEE
T ss_pred CCCEEECCEEcC-CCEECCCCCEEEE
Confidence 456899999995 4468999999987
No 63
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=46.97 E-value=18 Score=27.10 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=16.1
Q ss_pred cCceEECCEEeeeccceecCCCEEEEE
Q 026355 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (240)
Q Consensus 95 ~G~V~VNG~~v~~~~~~L~~GD~I~v~ 121 (240)
.|.|.+|| -..+.+++||.|.|-
T Consensus 69 Sg~I~lNG----AAAr~~~~GD~vII~ 91 (114)
T 3oug_A 69 SKTIALNG----PAARRCEIGDQLFII 91 (114)
T ss_dssp SCCEEEEG----GGGGGCCTTCEEEEE
T ss_pred CCEEEeCC----HHHhccCCCCEEEEE
Confidence 35677777 345778899987763
No 64
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=46.69 E-value=5.9 Score=27.21 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=32.0
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEe
Q 026355 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
.++.++.++|.+. +++...+ .|.+||+.+. .+..+. ||+|+|..
T Consensus 18 ~~g~Tv~dLL~~L--gl~~~~V-------vV~vNG~~v~-~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 18 DDDGTYADLVRAV--DLSPHEV-------TVLVDGRPVP-EDQSVE-VDRVKVLR 61 (74)
T ss_dssp STTCSHHHHHHTT--CCCSSCC-------CEECCCCCCC-TTSSSC-CCCEEECS
T ss_pred CCCCcHHHHHHHc--CCCcceE-------EEEECCEECC-HHHCCC-CCEEEEEE
Confidence 3568899999986 4554432 4889999994 666665 99999853
No 65
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=45.98 E-value=14 Score=28.04 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.7
Q ss_pred CceEECCEEeeeccceecCCCEEEE
Q 026355 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 96 G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
+-++|||+++.. ..|+.||+|.+
T Consensus 82 NGT~vNg~~i~~--~~L~~GD~I~i 104 (131)
T 3hx1_A 82 NGLMINGKKVQE--HIIQTGDEIVM 104 (131)
T ss_dssp SCEEETTEEESE--EECCTTCEEEC
T ss_pred CceEECCEEeEe--EECCCCCEEEE
Confidence 468999999953 88999999987
No 66
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=45.67 E-value=6.7 Score=28.96 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=17.7
Q ss_pred HcCceEECCEEeeeccceecCCCE
Q 026355 94 RSGLVSINGQVVSKVSHNVKGGDM 117 (240)
Q Consensus 94 ~~G~V~VNG~~v~~~~~~L~~GD~ 117 (240)
..|.|+|||+++ ....|..||.
T Consensus 60 ~nGtVFVNGqrv--~~~~I~~gDt 81 (102)
T 3uv0_A 60 LVGKIFVNDQEE--TVVDIGMENA 81 (102)
T ss_dssp SSSCEEETTEEE--SEEEECGGGC
T ss_pred ccCcEEECCEEe--eeEEccCCcc
Confidence 468899999999 3577888886
No 67
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=43.51 E-value=12 Score=26.88 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=19.2
Q ss_pred CceEECCEEeeeccceecCCCEEEE
Q 026355 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 96 G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
+.++|||+++.. ...|+.||+|.+
T Consensus 69 nGt~vng~~i~~-~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 69 NGVIVEGRKIEH-QSTLSANQVVAL 92 (106)
T ss_dssp SCCEETTEECSS-EEECCTTCCEEE
T ss_pred CCeEECCEECCC-CeECCCCCEEEE
Confidence 347889999953 468999999987
No 68
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=42.36 E-value=4.6 Score=30.24 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHhccCCCCHHHHHHHH-HcC------ceEECCEEee---eccceecCCCEEEEEe
Q 026355 73 LDAWISSRIDGISRARVQSSI-RSG------LVSINGQVVS---KVSHNVKGGDMVNCTI 122 (240)
Q Consensus 73 Ldk~L~~~~~~~SR~~~~klI-~~G------~V~VNG~~v~---~~~~~L~~GD~I~v~~ 122 (240)
|-.+|.+.++...++ ++ ..| .|+|||+-+. ..++.|+.||+|.+..
T Consensus 48 Ll~~L~~~~~~~~~~----lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 48 LLVWIKKNLLKERPE----LFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp HHHHHTTTTCCSCHH----HHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred HHHHHHHHccchhHh----hCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeC
Confidence 555666665544332 23 223 3889998653 4679999999988843
No 69
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=41.49 E-value=17 Score=25.73 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.3
Q ss_pred CceEECCEEeeeccceecCCCEEEE
Q 026355 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 96 G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
+.++|||+++. ...|+.||+|.+
T Consensus 65 nGt~vng~~i~--~~~L~~gd~i~i 87 (100)
T 3po8_A 65 NGTTVNNAPVQ--EWQLADGDVIRL 87 (100)
T ss_dssp SCCEETTEECS--EEECCTTCEEEE
T ss_pred CCEEECCEECc--eEECCCCCEEEE
Confidence 35889999995 478999999987
No 70
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=41.12 E-value=8.8 Score=27.58 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.1
Q ss_pred ceEECCEEee---eccceecCCCEEEEEe
Q 026355 97 LVSINGQVVS---KVSHNVKGGDMVNCTI 122 (240)
Q Consensus 97 ~V~VNG~~v~---~~~~~L~~GD~I~v~~ 122 (240)
.|.|||+.+. ..++.|+.||+|.|-.
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEEC
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEEC
Confidence 6899999884 3678899999998843
No 71
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=39.56 E-value=20 Score=28.54 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.1
Q ss_pred ceEECCEEeee---ccceecCCCEEEEEe
Q 026355 97 LVSINGQVVSK---VSHNVKGGDMVNCTI 122 (240)
Q Consensus 97 ~V~VNG~~v~~---~~~~L~~GD~I~v~~ 122 (240)
.|.|||+.+.. .++.|+.||+|.|..
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 48899999953 278899999998854
No 72
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=38.22 E-value=5 Score=29.13 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=47.7
Q ss_pred CceEEEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEe
Q 026355 56 AGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (240)
Q Consensus 56 ~~~~~~~~V~~~~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~ 122 (240)
.|-++...+.+.+.=..|.+.+++.. +++... ++++..|++.-|+..+ .++.|+.|+.|.++.
T Consensus 30 ~Gkk~~v~v~p~DTI~~LK~~I~~k~-Gip~~q-QrLif~Gk~LkD~~TL--~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 30 LGKKVRVKCLGEDSVGDFKKVLSLQI-GTQPNK-IVLQKGGSVLKDHISL--EDYEVHDQTNLELYY 92 (93)
T ss_dssp TSCEEEEEEETTSBHHHHHHHHHHHH-TCCGGG-EEEEETTEECCTTSBT--GGGTCCTTCEEEEEE
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHh-CCCHHH-EEEEeCCEEccCcCCH--HHcCCCCCCEEEEEe
Confidence 35577777877777778888888774 566554 5778888888777766 479999999998764
No 73
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=38.17 E-value=21 Score=27.48 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=20.2
Q ss_pred HcCceEECCEEeeeccceecCCCEEEE
Q 026355 94 RSGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 94 ~~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
....++|||+++......|..||+|.+
T Consensus 85 S~NGT~VNg~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp CSSCEEETTEECCSSCEEECSSEEEEE
T ss_pred CCCCeEECCEEcCCCceECCCCCEEEE
Confidence 344578899999532478999999987
No 74
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=36.41 E-value=30 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=17.7
Q ss_pred CceEECCEEeeecc--ceecCCCEEEE
Q 026355 96 GLVSINGQVVSKVS--HNVKGGDMVNC 120 (240)
Q Consensus 96 G~V~VNG~~v~~~~--~~L~~GD~I~v 120 (240)
...+|||+++. +. ..|+.||+|.+
T Consensus 94 NGT~vNg~ri~-~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 94 HGTFLNKTRIP-PRTYCRVHVGHVVRF 119 (130)
T ss_dssp SCEEETTEECC-TTCCEECCTTCEEEE
T ss_pred CceEECCEECC-CCceeECCCCCEEEE
Confidence 45667888884 33 46899999987
No 75
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=35.79 E-value=28 Score=25.40 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=19.2
Q ss_pred cCceEECCEEeeeccceecCCCEEEE
Q 026355 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 95 ~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
...++|||+++. ...|+.||+|.+
T Consensus 72 ~nGt~vng~~i~--~~~L~~gd~i~i 95 (115)
T 2xt9_B 72 LNGTYVNREPVD--SAVLANGDEVQI 95 (115)
T ss_dssp SSCEEETTEECS--EEEECTTCEEEE
T ss_pred CCCeEECCEEcc--eEECCCCCEEEE
Confidence 345788999985 478999999987
No 76
>2rsx_A Uncharacterized protein YOEB; inhibitor protein, hacksaw-like fold, autolysin inhibitor, D endopeptidase inhibitor, hydrolase inhibitor; NMR {Bacillus subtilis}
Probab=35.58 E-value=1.6e+02 Score=23.17 Aligned_cols=52 Identities=8% Similarity=0.162 Sum_probs=38.0
Q ss_pred cccCCCceEEEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCc-eEECCEEe
Q 026355 51 PIANYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGL-VSINGQVV 105 (240)
Q Consensus 51 ~~~~~~~~~~~~~V~~~~~g~RLdk~L~~~~~~~SR~~~~klI~~G~-V~VNG~~v 105 (240)
+.-.+.|..+.+..+.-.....|-++|.+. .+.+.+.+.+..-. +-+||+.+
T Consensus 43 ~~f~~~g~~Y~~l~~d~nTkeKL~~YLn~y---fTk~ai~~~ik~~~f~e~nGkla 95 (159)
T 2rsx_A 43 GTFEYQNLQYVYMCSDLGTKAKAVNYLTPI---FTKTAIEKGFKDYHFTVSKGKLA 95 (159)
T ss_dssp CEEEETTEEEEECCTTSSSHHHHHHHHTTT---BCHHHHHHHHHTTTCEEETTEEE
T ss_pred CceEECCEEeEEcccccCCHHHHHHHHHHH---HHHHHHHHHHhccceEEECCEEE
Confidence 334456777776666666678899999985 59999988876554 55799876
No 77
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=34.57 E-value=45 Score=21.27 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=23.9
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHcCceE
Q 026355 71 LRLDAWISSRIDGISRARVQSSIRSGLVS 99 (240)
Q Consensus 71 ~RLdk~L~~~~~~~SR~~~~klI~~G~V~ 99 (240)
.+|++|-...|...|.+.+.+++++|.|.
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIF 31 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCEE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 46788888775347999999999999995
No 78
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=33.91 E-value=1.3e+02 Score=23.53 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=38.9
Q ss_pred CCEEeeeccceecCCCEEEEEeccCCc----ccc---cccCCCceeeecCCcEEEEeCCCCceeecCCC
Q 026355 101 NGQVVSKVSHNVKGGDMVNCTISELQP----LRA---EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 162 (240)
Q Consensus 101 NG~~v~~~~~~L~~GD~I~v~~~~~~~----~~~---~p~~~~l~Ilyed~~~lvvnKPaGl~v~p~~~ 162 (240)
+|.........|++||.|.+.....-. ..+ .....-..+-.++.|-+++|+-.|++||-...
T Consensus 110 ~g~~~w~~A~eLk~GD~v~~~~~~~~~~~~V~~v~~~~~~~~vy~Ltv~g~Ht~vv~~~~gi~vhn~~~ 178 (186)
T 2jmz_A 110 TGEVLEINAEMVKVGDYIYIPKNNTINLDEVIKVETVDYNGHIYDLTVEDNHTYIAGKNEGFAVSASSG 178 (186)
T ss_dssp TTEEEEEEGGGCCTTSEEEEECSSSEEEEECCCCCEEEECSCEEEEECTTTSEEEESSTTCEEEECCSS
T ss_pred CCeEEEEEhhcCCCCCEEEecccCCccceEEEEEEEeccCCEEEeeEEcCceeEEecCCCCEEEEcCCC
Confidence 466666778889999999875321100 000 01111124456677899999999999997754
No 79
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=33.86 E-value=35 Score=24.77 Aligned_cols=22 Identities=50% Similarity=0.765 Sum_probs=17.2
Q ss_pred cCceEECCEEeeeccceecCCCEEEE
Q 026355 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 95 ~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
.|.|.+|| -..+.+++||.|.|
T Consensus 42 SG~I~lNG----AAArl~~~GD~vII 63 (96)
T 1vc3_B 42 SGVIGING----AAAHLVKPGDLVIL 63 (96)
T ss_dssp TTCEEEEG----GGGGTCCTTCEEEE
T ss_pred CCeEEEch----HHHccCCCCCEEEE
Confidence 57788999 34577999998776
No 80
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=32.74 E-value=22 Score=25.95 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.7
Q ss_pred cCceEECCEEeeeccceecCCCEEEE
Q 026355 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 95 ~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
.|.|.+|| -..+.+++||.|.|
T Consensus 40 SG~I~lNG----AAArl~~~GD~vII 61 (97)
T 1uhe_A 40 RGEICVNG----AAARKVAIGDVVII 61 (97)
T ss_dssp TTCEEEEG----GGGGGCCTTCEEEE
T ss_pred CCeEEEch----HHHccCCCCCEEEE
Confidence 67899999 44577999998776
No 81
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=32.65 E-value=25 Score=29.44 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=35.0
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEE---CCEEeeec-------cceecCCCEEEEEec
Q 026355 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSI---NGQVVSKV-------SHNVKGGDMVNCTIS 123 (240)
Q Consensus 68 ~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~V---NG~~v~~~-------~~~L~~GD~I~v~~~ 123 (240)
..|+.++.||... ++.++ ....+|+| ||.+.... ...+.|||+|.|...
T Consensus 145 ~~g~~~~dYi~~a-gg~~~------Ad~~~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~ 203 (236)
T 3p42_A 145 LAGRSVTDYLQDH-PRLAG------ADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFS 203 (236)
T ss_dssp CTTCCHHHHHTTS-CBCTT------BCSSEEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBC
T ss_pred cCCCCHHHHHHhC-CCCCC------CCCccEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCC
Confidence 3588999999987 44552 34667787 88876432 447999999988553
No 82
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=32.00 E-value=21 Score=26.54 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=19.3
Q ss_pred CceEECCEEeeeccceecCCCEEEE
Q 026355 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 96 G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
+.++|||+++. ....|..||+|.+
T Consensus 75 nGt~vNg~~i~-~~~~L~~Gd~i~i 98 (128)
T 1r21_A 75 NPTQVNGSVID-EPVRLKHGDVITI 98 (128)
T ss_dssp SCCEETTEECS-SCEECCTTEEEEC
T ss_pred CCEEECCEECC-CcEEcCCCCEEEE
Confidence 45788999995 3578999999987
No 83
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=31.49 E-value=23 Score=26.02 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=17.8
Q ss_pred cCceEECCEEeeeccceecCCCEEEEE
Q 026355 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (240)
Q Consensus 95 ~G~V~VNG~~v~~~~~~L~~GD~I~v~ 121 (240)
.|.|.+|| -..+.+++||.|.|-
T Consensus 41 SG~I~lNG----AAArl~~~GD~vII~ 63 (102)
T 3plx_B 41 EGVVCLNG----AAARLAEVGDKVIIM 63 (102)
T ss_dssp TTCEEEEG----GGGGGCCTTCEEEEE
T ss_pred CCEEEeCc----HHHhccCCCCEEEEE
Confidence 57799999 355779999987763
No 84
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.48 E-value=9 Score=28.03 Aligned_cols=61 Identities=10% Similarity=0.039 Sum_probs=38.7
Q ss_pred ceEEEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEE
Q 026355 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCT 121 (240)
Q Consensus 57 ~~~~~~~V~~~~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~ 121 (240)
|.+++..|...+.=..|.+.+++.. +++..+ ++||..|++.-|+..+ .++.|..|+.|.+.
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~-Gip~~q-QrLi~~Gk~L~D~~TL--~dygI~~gstlhL~ 98 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQT-GTRWNK-IVLKKWYTIFKDHVSL--GDYEIHDGMNLELY 98 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHH-CCCGGG-CEEEETTEECCSSCBH--HHHTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHh-CCCHHH-EEEEECCEECCCCCCH--HHcCCCCCCEEEEE
Confidence 4556666666665566777777764 455433 5566667766566555 35777888887664
No 85
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=29.54 E-value=27 Score=26.81 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.4
Q ss_pred CceEECCEEeeeccceecCCCEEEE
Q 026355 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 96 G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
+.++|||+++. ...|+.||+|.+
T Consensus 108 NGT~VNg~~i~--~~~L~~GD~I~i 130 (143)
T 2kb3_A 108 NGTYVNREPRN--AQVMQTGDEIQI 130 (143)
T ss_dssp SCCEETTEECS--EEECCTTEEEEE
T ss_pred CCeEECCEEcc--eEECCCCCEEEE
Confidence 33566888885 478999999987
No 86
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.45 E-value=4.2 Score=29.87 Aligned_cols=59 Identities=8% Similarity=-0.038 Sum_probs=44.6
Q ss_pred eEEEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEE
Q 026355 58 VQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 58 ~~~~~~V~~~~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
.++...|...+....|..-+++.. +++.. -+++|-+|+|.-+++.+ .++.|++|..|.+
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~-gip~~-qQrLI~~GKiL~D~~TL--~~y~I~~gsti~v 88 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETF-GLQEN-YIKIVINKKQLQLGKTL--EEQGVAHNVKAMV 88 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHT-TCCST-TCEEEETTEECCTTSBH--HHHTCCSSEEEEE
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHH-CcCHH-HeEEEeCCeECCCCCcH--HHcCCCCCCEEEE
Confidence 356777888888888999899886 45543 36778888888888777 3688999998844
No 87
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=28.15 E-value=47 Score=25.02 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=20.3
Q ss_pred CceEECCEEeee-ccceecCCCEEEEEe
Q 026355 96 GLVSINGQVVSK-VSHNVKGGDMVNCTI 122 (240)
Q Consensus 96 G~V~VNG~~v~~-~~~~L~~GD~I~v~~ 122 (240)
...+|||+++.. ....|..||+|.+-.
T Consensus 75 NGT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 75 NGVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CCeEECCEEcCCCCcEECCCCCEEEECC
Confidence 457899999842 147899999999843
No 88
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=26.87 E-value=46 Score=24.63 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=21.0
Q ss_pred HcCceEECCEEeee-ccceecCCCEEEEE
Q 026355 94 RSGLVSINGQVVSK-VSHNVKGGDMVNCT 121 (240)
Q Consensus 94 ~~G~V~VNG~~v~~-~~~~L~~GD~I~v~ 121 (240)
..+..+|||+++.. ....|..||+|.+-
T Consensus 77 S~NGT~vNg~~l~~~~~~~L~~Gd~I~lG 105 (127)
T 1g6g_A 77 STNGTWLNGQKVEKNSNQLLSQGDEITVG 105 (127)
T ss_dssp CSSCCEETTEECCTTCCEECCTTCEEEEC
T ss_pred CcCCeEECCEEcCCCCeEEcCCCCEEEEC
Confidence 34557899999953 14789999999884
No 89
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=25.24 E-value=42 Score=25.68 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=19.6
Q ss_pred CceEECCEEeee-ccceecCCCEEEEE
Q 026355 96 GLVSINGQVVSK-VSHNVKGGDMVNCT 121 (240)
Q Consensus 96 G~V~VNG~~v~~-~~~~L~~GD~I~v~ 121 (240)
+..+|||+++.+ ....|+.||+|.+-
T Consensus 103 NGT~VNg~~i~~~~~~~L~~GD~I~lG 129 (149)
T 1gxc_A 103 NGTFVNTELVGKGKRRPLNNNSEIALS 129 (149)
T ss_dssp SCEEETTEECCTTCEEECCTTEEEEES
T ss_pred CCeEECCEECCCCCeEECCCCCEEEEC
Confidence 447899999852 24678999999884
No 90
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=25.09 E-value=55 Score=25.52 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=20.6
Q ss_pred HcCceEECCEEeeec-cceecCCCEEEEE
Q 026355 94 RSGLVSINGQVVSKV-SHNVKGGDMVNCT 121 (240)
Q Consensus 94 ~~G~V~VNG~~v~~~-~~~L~~GD~I~v~ 121 (240)
..+..+|||+++... ...|..||+|.+-
T Consensus 105 S~NGT~vNg~~i~~~~~~~L~~GD~I~iG 133 (164)
T 1g3g_A 105 STNGTWLNGQKVEKNSNQLLSQGDEITVG 133 (164)
T ss_dssp CSSCEEETTEEECTTEEEECCTTCEEEES
T ss_pred CCCCeEECCEEcCCCCceEcCCCCEEEEC
Confidence 445578899998521 3779999999884
No 91
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=24.54 E-value=46 Score=25.87 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=15.2
Q ss_pred cCceEECCEEeeeccceecCCCEEEE
Q 026355 95 SGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 95 ~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
.|.|.+|| -..+.+++||.|.|
T Consensus 83 SG~I~lNG----AAArl~~~GD~VII 104 (143)
T 1pqh_A 83 SRIISVNG----AAAHCASVGDIVII 104 (143)
T ss_dssp CCCEECCG----GGGGTCCTTCEEEE
T ss_pred CceEEech----HHHccCCCCCEEEE
Confidence 35566666 34577889998776
No 92
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.35 E-value=12 Score=27.02 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=36.9
Q ss_pred ceEEEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEec
Q 026355 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (240)
Q Consensus 57 ~~~~~~~V~~~~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~ 123 (240)
|..+...|...+.-..|.+.+.... +++-.. ++++-+|++.-|+..+ .++.|+.|+.|.+...
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~-QrLi~~Gk~L~D~~tL--~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSI-SCEESQ-IKLIYSGKVLQDSKTV--SECGLKDGDQVVFMVS 73 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTT-TSCGGG-CEEEETTEECCTTSBT--TTTTCCTTCEEEEECC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHH-CCChhh-EEEEECCEECCCcCCH--HHcCCCCCCEEEEEEc
Confidence 4456655666555556666777664 344332 4555556555555444 3577888888877553
No 93
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=24.24 E-value=47 Score=26.08 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.2
Q ss_pred ceEECCEEeeeccceecCCCEEEE
Q 026355 97 LVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 97 ~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
-++|||+++. ...|+.||+|.+
T Consensus 128 GT~VNG~~i~--~~~L~~GD~I~l 149 (157)
T 3oun_A 128 GTTVNNAPVQ--EWQLADGDVIRL 149 (157)
T ss_dssp CCEETTEECS--EEECCTTCEEEE
T ss_pred CeEECCEECc--eEECCCCCEEEE
Confidence 4567888884 478999999987
No 94
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.99 E-value=20 Score=27.07 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=46.1
Q ss_pred ceEEEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeeeccceecCCCEEEEEecc
Q 026355 57 GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124 (240)
Q Consensus 57 ~~~~~~~V~~~~~g~RLdk~L~~~~~~~SR~~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v~~~~ 124 (240)
+.+++..+..+..=.-|...|+..+ .++-.. +++|-+|+|.=|+..+ ..+.|++|..|.+....
T Consensus 26 ~~k~tv~v~~d~TV~dLKe~ls~~~-~iP~e~-qrLIy~GKiLKD~eTL--~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 26 GQEIVIPFKVDTILKYLKDHFSHLL-GIPHSV-LQIRYSGKILKNNETL--VQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CCEEEEEECSSSCSHHHHHHHHHHH-TCCTTT-EEEEETTEEECSSCCH--HHHSCCSSCEEEEEEEE
T ss_pred CcEEEEEeCCCCcHHHHHHHHHhhh-CCChHH-EEEEECCeEcCCcchH--HHcCCCCCCEEEEEEec
Confidence 3456666666666677888888875 444433 5688888888888777 47899999999987654
No 95
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=23.59 E-value=24 Score=24.74 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=42.9
Q ss_pred CCCceEEEEEEcCCCccchHHHHHHhccCCCCH---H-HHHHHHHcCceEECCEEeeeccceecCCCEEEE
Q 026355 54 NYAGVQLEETVDTKAGKLRLDAWISSRIDGISR---A-RVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 54 ~~~~~~~~~~V~~~~~g~RLdk~L~~~~~~~SR---~-~~~klI~~G~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
.+.+..+...++..-.-.+|-+.+.+.+. ++- + .+-+...++.+.-.+... .++.|..||.|+|
T Consensus 13 ~y~~~~~DLRIP~~~tvK~Li~~l~ea~~-l~~~~~~~~~irv~NK~~~L~~~~~L--~d~~ItnGD~Lei 80 (81)
T 2bps_A 13 HYNGSVFDLRLSDYHPVKKVIDIAWQAQS-VSMPPREGHWIRVVNKDKVFSGECKL--SDCGITNGDRLEI 80 (81)
T ss_dssp TTTCCEEEEEEETTSBTTHHHHHHHHHSC-CCSCCCTTCEEEEGGGTEEEETTSBT--GGGTCCTTCEEEE
T ss_pred ccCCceEEEECCCchhHHHHHHHHHHHhC-CCcCCCCCCEEEEecCCEEEcCCCEE--eeCCcCCCCEEEE
Confidence 35566888889988888899999998863 331 1 222334455555555555 3688899999876
No 96
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=23.11 E-value=43 Score=25.94 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=16.4
Q ss_pred cCceEECCEEeeeccceecCCCEEEEE
Q 026355 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (240)
Q Consensus 95 ~G~V~VNG~~v~~~~~~L~~GD~I~v~ 121 (240)
.|.|.+|| -..+.+++||.|.|-
T Consensus 66 SG~I~lNG----AAArl~~~GD~vII~ 88 (139)
T 2c45_A 66 SGVIGING----AAAHLVHPGDLVILI 88 (139)
T ss_dssp TTCEEEES----STTTTSCTTCEEEEE
T ss_pred CCEEEEch----HHHccCCCCCEEEEE
Confidence 46677777 355778899987763
No 97
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=22.85 E-value=27 Score=25.53 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=16.8
Q ss_pred ceEECCEEeeec-cceecCCCEEEE
Q 026355 97 LVSINGQVVSKV-SHNVKGGDMVNC 120 (240)
Q Consensus 97 ~V~VNG~~v~~~-~~~L~~GD~I~v 120 (240)
..+|||+++... ...|+.||+|.+
T Consensus 77 GT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 77 GTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp CCEESSSBCCTTCEEECCTTEEEEE
T ss_pred CeEECCEECCCCCeEEcCCCCEEEE
Confidence 466788777421 466888998887
No 98
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=22.58 E-value=38 Score=25.55 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=20.0
Q ss_pred cCceEECCEEeee---------ccceecCCCEEEE
Q 026355 95 SGLVSINGQVVSK---------VSHNVKGGDMVNC 120 (240)
Q Consensus 95 ~G~V~VNG~~v~~---------~~~~L~~GD~I~v 120 (240)
.+..+|||+++.. ....|+.||+|.+
T Consensus 75 ~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 75 LNGTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SSCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred CCCEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 3457899999953 2578999999987
No 99
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=22.54 E-value=28 Score=25.29 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.5
Q ss_pred ceEECCEEeee-ccceecCCCEEEEEe
Q 026355 97 LVSINGQVVSK-VSHNVKGGDMVNCTI 122 (240)
Q Consensus 97 ~V~VNG~~v~~-~~~~L~~GD~I~v~~ 122 (240)
.++|||+++.. ....|+.||+|.+-.
T Consensus 69 Gt~vng~~l~~~~~~~L~~GD~i~~G~ 95 (116)
T 1lgp_A 69 GTVINKLKVVKKQTCPLQTGDVIYLVY 95 (116)
T ss_dssp CCCCCCCCCCCSSCCCCCTTCEEEEEC
T ss_pred CcEECCEEcCCCCcEECCCCCEEEEec
Confidence 46788988853 247899999999854
No 100
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=21.89 E-value=41 Score=26.47 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=16.0
Q ss_pred ceEECCEEeeeccceecCCCEEEE
Q 026355 97 LVSINGQVVSKVSHNVKGGDMVNC 120 (240)
Q Consensus 97 ~V~VNG~~v~~~~~~L~~GD~I~v 120 (240)
.++|||+++. ...|+.||+|.+
T Consensus 118 GT~VNg~~i~--~~~L~~GD~I~i 139 (162)
T 2kfu_A 118 GTYVNREPVD--SAVLANGDEVQI 139 (162)
T ss_dssp CEEETTBCCS--EEECCSSCEEEE
T ss_pred CeEECCEEcc--eEECCCCCEEEE
Confidence 3556777774 467889999887
No 101
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=21.75 E-value=88 Score=21.28 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.2
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHcCceE
Q 026355 71 LRLDAWISSRIDGISRARVQSSIRSGLVS 99 (240)
Q Consensus 71 ~RLdk~L~~~~~~~SR~~~~klI~~G~V~ 99 (240)
++|++|-...|...|...+.+++++|.|.
T Consensus 3 lTl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (72)
T 1pm6_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIF 31 (72)
T ss_dssp EEHHHHHHHSSSCCCHHHHHHHHHHTCEE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 46888888775447999999999999995
No 102
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=20.65 E-value=37 Score=26.37 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=21.1
Q ss_pred HcCceEECCEEeee-ccceecCCCEEEEE
Q 026355 94 RSGLVSINGQVVSK-VSHNVKGGDMVNCT 121 (240)
Q Consensus 94 ~~G~V~VNG~~v~~-~~~~L~~GD~I~v~ 121 (240)
-.+..+|||+++.. ....|..||+|.+.
T Consensus 81 StNGT~VNg~ri~~~~~~~L~~GD~I~l~ 109 (158)
T 1dmz_A 81 GTNVSYLNNNRMIQGTKFLLQDGDEIKII 109 (158)
T ss_dssp STTCCEETTEECCSSEEEECCSSCCEESC
T ss_pred CcCCeEECCEEcCCCceEEcCCCCEEEEe
Confidence 44557899999953 13789999999883
No 103
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=20.61 E-value=1.6e+02 Score=19.84 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=20.0
Q ss_pred cCceEECCEEee--ec--cceecCCCEEEEEec
Q 026355 95 SGLVSINGQVVS--KV--SHNVKGGDMVNCTIS 123 (240)
Q Consensus 95 ~G~V~VNG~~v~--~~--~~~L~~GD~I~v~~~ 123 (240)
.|+|.++|..-+ .. +..+.+|+.|.|...
T Consensus 39 ~G~V~~~G~~W~A~s~~~~~~i~~G~~V~Vv~v 71 (82)
T 3cp0_A 39 SGQVRLDGSIWSARSMDPTHTFAEGEIVSVIDI 71 (82)
T ss_dssp CCEEEETTEEEEEEESSTTCCBCTTCEEEEEEE
T ss_pred CEEEEECCEEEEEEECCCCCccCCCCEEEEEEE
Confidence 488999997532 11 256889998888653
Done!