Query 026356
Match_columns 240
No_of_seqs 152 out of 1975
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 9.4E-23 2E-27 169.4 3.4 210 21-238 138-388 (483)
2 KOG4341 F-box protein containi 99.8 5.2E-20 1.1E-24 153.2 3.7 208 26-240 169-419 (483)
3 KOG1947 Leucine rich repeat pr 99.7 7.2E-16 1.6E-20 136.2 10.8 181 46-233 186-373 (482)
4 KOG1947 Leucine rich repeat pr 99.6 1.6E-15 3.6E-20 133.9 12.3 192 25-224 192-389 (482)
5 KOG2120 SCF ubiquitin ligase, 99.5 1.3E-14 2.8E-19 116.8 6.7 166 48-236 185-352 (419)
6 cd00116 LRR_RI Leucine-rich re 99.5 9.4E-13 2E-17 110.5 18.2 192 26-234 86-290 (319)
7 cd00116 LRR_RI Leucine-rich re 99.5 1.2E-12 2.7E-17 109.8 18.2 125 48-178 137-271 (319)
8 KOG2120 SCF ubiquitin ligase, 99.5 3.3E-13 7.2E-18 108.8 8.7 188 26-225 190-390 (419)
9 KOG1909 Ran GTPase-activating 99.1 4.8E-10 1E-14 92.3 10.7 194 26-233 97-309 (382)
10 KOG1909 Ran GTPase-activating 99.0 4.8E-09 1E-13 86.5 9.7 174 46-234 90-282 (382)
11 KOG3207 Beta-tubulin folding c 98.8 1.3E-09 2.8E-14 92.2 0.0 185 26-231 151-335 (505)
12 KOG3207 Beta-tubulin folding c 98.7 7.7E-09 1.7E-13 87.6 2.6 114 44-167 117-233 (505)
13 KOG3665 ZYG-1-like serine/thre 98.7 9.5E-08 2.1E-12 87.8 9.6 139 78-230 122-283 (699)
14 PLN00113 leucine-rich repeat r 98.6 5.3E-08 1.1E-12 93.7 4.5 40 191-234 305-344 (968)
15 PLN00113 leucine-rich repeat r 98.6 8.9E-08 1.9E-12 92.1 5.9 41 190-234 328-368 (968)
16 KOG3864 Uncharacterized conser 98.5 8E-08 1.7E-12 73.8 4.2 90 79-171 102-191 (221)
17 KOG3665 ZYG-1-like serine/thre 98.5 9.3E-07 2E-11 81.4 11.2 152 25-189 126-281 (699)
18 PLN03210 Resistant to P. syrin 98.5 1.1E-07 2.4E-12 92.8 4.1 16 46-61 655-670 (1153)
19 KOG3864 Uncharacterized conser 98.3 9.6E-07 2.1E-11 68.0 4.4 87 50-143 103-189 (221)
20 KOG4194 Membrane glycoprotein 98.3 2.3E-07 5.1E-12 81.6 0.8 129 26-171 83-211 (873)
21 PF14580 LRR_9: Leucine-rich r 98.2 6.5E-07 1.4E-11 68.6 2.4 130 46-201 17-147 (175)
22 PF14580 LRR_9: Leucine-rich r 98.1 5.6E-07 1.2E-11 68.9 0.1 126 24-166 22-150 (175)
23 PLN03210 Resistant to P. syrin 98.1 2.1E-06 4.6E-11 84.0 2.9 112 76-201 800-911 (1153)
24 KOG4308 LRR-containing protein 98.0 3.1E-06 6.8E-11 74.8 2.6 194 26-234 92-302 (478)
25 COG5238 RNA1 Ran GTPase-activa 97.9 0.00027 5.9E-09 57.3 11.5 48 130-179 185-236 (388)
26 COG5238 RNA1 Ran GTPase-activa 97.9 0.00016 3.5E-09 58.5 10.0 194 25-233 34-253 (388)
27 KOG4194 Membrane glycoprotein 97.8 4.3E-06 9.3E-11 73.9 -0.2 106 48-165 125-230 (873)
28 smart00367 LRR_CC Leucine-rich 97.7 5.9E-05 1.3E-09 38.6 2.9 25 155-179 1-25 (26)
29 KOG4308 LRR-containing protein 97.6 2.9E-05 6.3E-10 68.7 2.7 168 26-209 120-305 (478)
30 KOG0618 Serine/threonine phosp 97.4 4.5E-05 9.8E-10 70.7 0.7 123 26-166 364-486 (1081)
31 KOG0444 Cytoskeletal regulator 97.2 4.9E-05 1.1E-09 68.1 -1.6 39 191-234 336-374 (1255)
32 KOG2982 Uncharacterized conser 97.1 0.00085 1.8E-08 55.2 4.7 79 26-113 76-155 (418)
33 KOG0444 Cytoskeletal regulator 96.9 5.5E-05 1.2E-09 67.8 -3.8 13 220-232 337-349 (1255)
34 KOG4658 Apoptotic ATPase [Sign 96.8 0.0011 2.4E-08 63.1 4.0 78 22-113 572-651 (889)
35 KOG2982 Uncharacterized conser 96.8 0.00032 6.9E-09 57.6 -0.0 106 52-165 49-155 (418)
36 KOG0618 Serine/threonine phosp 96.8 9.7E-05 2.1E-09 68.6 -3.4 129 48-205 359-487 (1081)
37 KOG1859 Leucine-rich repeat pr 96.7 0.00083 1.8E-08 61.3 1.9 165 44-233 105-290 (1096)
38 PF13855 LRR_8: Leucine rich r 96.5 7.8E-05 1.7E-09 46.7 -4.4 36 128-165 23-58 (61)
39 PRK15387 E3 ubiquitin-protein 96.4 0.0044 9.6E-08 58.1 5.0 90 48-165 222-311 (788)
40 PF13855 LRR_8: Leucine rich r 96.3 0.00014 3E-09 45.5 -3.9 13 128-140 47-59 (61)
41 KOG4237 Extracellular matrix p 96.3 0.0012 2.7E-08 56.1 0.5 76 153-233 271-357 (498)
42 PF13516 LRR_6: Leucine Rich r 96.3 0.0038 8.2E-08 31.0 2.0 9 132-140 4-12 (24)
43 PF12799 LRR_4: Leucine Rich r 96.2 0.0043 9.2E-08 36.0 2.4 11 155-165 23-33 (44)
44 KOG2739 Leucine-rich acidic nu 96.2 0.0016 3.5E-08 52.3 0.7 88 75-165 62-152 (260)
45 PRK15370 E3 ubiquitin-protein 96.0 0.0028 6.1E-08 59.4 1.5 10 131-140 284-293 (754)
46 PLN03150 hypothetical protein; 95.9 0.011 2.5E-07 54.5 5.0 13 128-140 488-500 (623)
47 KOG1259 Nischarin, modulator o 95.9 0.007 1.5E-07 50.0 2.9 117 103-233 283-410 (490)
48 KOG1859 Leucine-rich repeat pr 95.8 0.0023 4.9E-08 58.6 -0.0 78 78-166 187-264 (1096)
49 KOG2123 Uncharacterized conser 95.8 0.003 6.6E-08 51.5 0.5 82 46-136 39-123 (388)
50 PF13516 LRR_6: Leucine Rich r 95.8 0.011 2.4E-07 29.3 2.4 21 78-99 2-22 (24)
51 KOG1259 Nischarin, modulator o 95.6 0.01 2.2E-07 49.1 2.8 79 78-165 329-408 (490)
52 PRK15370 E3 ubiquitin-protein 95.6 0.026 5.6E-07 53.1 5.8 98 48-170 199-296 (754)
53 PLN03150 hypothetical protein; 95.5 0.022 4.8E-07 52.6 5.3 106 26-143 423-528 (623)
54 PF12799 LRR_4: Leucine Rich r 95.5 0.013 2.7E-07 34.0 2.2 38 104-145 1-38 (44)
55 PRK15387 E3 ubiquitin-protein 95.4 0.014 3E-07 54.9 3.5 72 130-209 382-460 (788)
56 KOG2123 Uncharacterized conser 94.6 0.02 4.4E-07 46.9 2.0 116 90-228 3-123 (388)
57 KOG2739 Leucine-rich acidic nu 94.5 0.023 5.1E-07 45.8 2.1 90 44-140 61-153 (260)
58 smart00368 LRR_RI Leucine rich 93.9 0.098 2.1E-06 27.0 3.0 9 132-140 4-12 (28)
59 KOG4658 Apoptotic ATPase [Sign 92.3 0.11 2.3E-06 49.9 2.9 19 221-239 769-787 (889)
60 KOG0617 Ras suppressor protein 92.1 0.0058 1.3E-07 46.5 -4.6 36 191-231 147-182 (264)
61 KOG0472 Leucine-rich repeat pr 91.3 0.21 4.6E-06 43.1 3.3 54 128-185 503-556 (565)
62 PRK15386 type III secretion pr 91.2 0.22 4.8E-06 43.4 3.4 35 49-91 73-107 (426)
63 KOG1644 U2-associated snRNP A' 90.8 0.09 1.9E-06 41.1 0.6 87 75-166 61-150 (233)
64 KOG1644 U2-associated snRNP A' 88.4 0.21 4.5E-06 39.1 1.0 101 26-140 47-150 (233)
65 KOG0531 Protein phosphatase 1, 86.0 0.3 6.5E-06 42.8 0.7 78 78-166 118-196 (414)
66 COG4886 Leucine-rich repeat (L 85.9 0.46 9.9E-06 41.2 1.8 60 79-145 141-200 (394)
67 COG4886 Leucine-rich repeat (L 84.6 0.69 1.5E-05 40.0 2.3 34 78-114 163-196 (394)
68 KOG3763 mRNA export factor TAP 84.6 2.4 5.3E-05 38.1 5.6 87 75-163 215-308 (585)
69 PF13504 LRR_7: Leucine rich r 84.6 0.61 1.3E-05 20.9 1.1 7 159-165 4-10 (17)
70 KOG4579 Leucine-rich repeat (L 82.6 0.64 1.4E-05 34.4 1.0 37 126-165 73-109 (177)
71 KOG4579 Leucine-rich repeat (L 82.1 0.59 1.3E-05 34.5 0.7 58 78-140 53-110 (177)
72 KOG4237 Extracellular matrix p 79.7 1.4 3.1E-05 38.1 2.3 64 103-171 273-336 (498)
73 KOG3763 mRNA export factor TAP 77.0 4.5 9.7E-05 36.5 4.6 86 46-136 216-307 (585)
74 PRK15386 type III secretion pr 75.9 2.9 6.4E-05 36.6 3.2 72 76-165 50-121 (426)
75 KOG3735 Tropomodulin and leiom 75.6 11 0.00024 31.9 6.3 30 123-153 248-277 (353)
76 KOG0472 Leucine-rich repeat pr 71.5 2.4 5.3E-05 36.9 1.6 98 126-233 431-539 (565)
77 KOG3735 Tropomodulin and leiom 69.7 19 0.00042 30.5 6.4 86 93-180 187-278 (353)
78 KOG0531 Protein phosphatase 1, 69.5 1.3 2.9E-05 38.8 -0.4 85 75-172 92-177 (414)
79 PF00560 LRR_1: Leucine Rich R 67.7 2.1 4.6E-05 20.4 0.3 9 158-166 2-10 (22)
80 PF07723 LRR_2: Leucine Rich R 55.7 11 0.00024 18.9 1.7 6 107-112 3-8 (26)
81 smart00369 LRR_TYP Leucine-ric 49.0 16 0.00034 17.9 1.7 10 131-140 3-12 (26)
82 smart00370 LRR Leucine-rich re 49.0 16 0.00034 17.9 1.7 10 131-140 3-12 (26)
83 smart00365 LRR_SD22 Leucine-ri 25.0 71 0.0015 16.0 1.7 10 131-140 3-12 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.86 E-value=9.4e-23 Score=169.40 Aligned_cols=210 Identities=19% Similarity=0.309 Sum_probs=153.1
Q ss_pred CcCeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHH
Q 026356 21 TVPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 100 (240)
Q Consensus 21 ~~~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 100 (240)
.|++-|.++||..+.+..+..+. .+||++++|++.+|.+++|..+..+++.| ++|++|++-.|+.+|+..++.++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C----~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYC----RKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhc----chhhhhhhcccchhHHHHHHHHH
Confidence 46777999999999888888775 59999999999999999999999999988 99999999999999999999999
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEecc--------------------------CCCCCCHHHHHHHHHh
Q 026356 101 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLS--------------------------GCKNLLDKSLQLIADN 154 (240)
Q Consensus 101 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~--------------------------~c~~ltd~~l~~l~~~ 154 (240)
..|++|+.++++||+.+++.+++.+.+++..++.+... +|..+||+++..++.+
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 99999999999999998888887777766655555333 4444555555555545
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHH---------------HhcCCccceeecccCCCCCchhHHHHHHHhh
Q 026356 155 YQELESLNLTRYVNMILLGLFYIWSNNILLMSEF---------------IYHGIRFFQAVQINSSNGGDHLAFAYIIETN 219 (240)
Q Consensus 155 ~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l---------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 219 (240)
|..|+.++.++|..++|..+..+..+|+. ++.+ ..++|+.|+.+++.-+....+..+.... .
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~-L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls--~ 369 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHN-LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS--R 369 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCc-eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc--c
Confidence 55555555555555555555555555443 2222 2234445666666433333332444444 6
Q ss_pred cccccchhhhhhhhhhhcc
Q 026356 220 TYKHGKEKHIIETIKTGQQ 238 (240)
Q Consensus 220 ~~~~L~~L~l~~c~~~~d~ 238 (240)
+|+.|++|++..|..|+|-
T Consensus 370 ~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDE 388 (483)
T ss_pred CCchhccCChhhhhhhhhh
Confidence 7888888888888887764
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.79 E-value=5.2e-20 Score=153.17 Aligned_cols=208 Identities=18% Similarity=0.274 Sum_probs=167.2
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 105 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 105 (240)
|++.+|..+++..+..++. .|+.|++|++..|.++++..++.++++| ++|++++++-|+.+++.+++.+.+.|..
T Consensus 169 L~l~gc~~iTd~s~~sla~-~C~~l~~l~L~~c~~iT~~~Lk~la~gC----~kL~~lNlSwc~qi~~~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 169 LALYGCKKITDSSLLSLAR-YCRKLRHLNLHSCSSITDVSLKYLAEGC----RKLKYLNLSWCPQISGNGVQALQRGCKE 243 (483)
T ss_pred hhhhcceeccHHHHHHHHH-hcchhhhhhhcccchhHHHHHHHHHHhh----hhHHHhhhccCchhhcCcchHHhccchh
Confidence 7888899899999888874 8899999999999999999999999988 8888888888888887777666665554
Q ss_pred CC--------------------------EEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCc
Q 026356 106 LK--------------------------VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 159 (240)
Q Consensus 106 L~--------------------------~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~ 159 (240)
++ ++++..|..+||.++..+...|.+|+.|+.++|..++|..+..|..++++|+
T Consensus 244 l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 244 LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence 44 4444456668888888888889999999999999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHhChhhhhHH---------------HhcCCccceeecccCC-CCCchhHHHHHHHh-hccc
Q 026356 160 SLNLTRYVNMILLGLFYIWSNNILLMSEF---------------IYHGIRFFQAVQINSS-NGGDHLAFAYIIET-NTYK 222 (240)
Q Consensus 160 ~L~l~~c~~it~~~~~~l~~~~~~~l~~l---------------~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~-~~~~ 222 (240)
.+.+..|.+++|.|+..++++|+. ++.+ ...+|+.|+.+.++-+ .++|. ++..+..+ .+..
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~-Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPH-LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-GIRHLSSSSCSLE 401 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChh-hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-hhhhhhhcccccc
Confidence 999999999999999999999876 4432 2356777888888633 44444 55544422 3457
Q ss_pred ccchhhhhhhhhhhcccC
Q 026356 223 HGKEKHIIETIKTGQQLL 240 (240)
Q Consensus 223 ~L~~L~l~~c~~~~d~~~ 240 (240)
.|..+.+.+||.|.|++|
T Consensus 402 ~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATL 419 (483)
T ss_pred ccceeeecCCCCchHHHH
Confidence 788899999999988764
No 3
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.65 E-value=7.2e-16 Score=136.22 Aligned_cols=181 Identities=24% Similarity=0.335 Sum_probs=116.4
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCC-CCCCcHHH--HHHHHhcCCCCCEEEecCCCCCCHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG-CQKISDKG--IEIISSTCPELKVFSIYWNVRVTDIGI 122 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~-c~~l~~~~--~~~l~~~~~~L~~L~l~~~~~l~~~~~ 122 (240)
.+++|+.|.+..|..+++.++..++..+ ++|+.|++++ |..++..+ ...+...|++|+.|+++++..++|.++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKC----PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhC----chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 4677777777777777777766666655 7777777776 33333332 334556677777777777756777777
Q ss_pred HHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHH---HhcCCccceee
Q 026356 123 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEF---IYHGIRFFQAV 199 (240)
Q Consensus 123 ~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l---~~~~~~~L~~l 199 (240)
..++..|++|+.|.+.+|..+||.++..++..|++|++|++++|..++|.++..+..+|+. ++.+ ...+|+.++.+
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~-l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN-LRELKLLSLNGCPSLTDL 340 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc-hhhhhhhhcCCCccHHHH
Confidence 7777777777777777776677777777777777777777777777777777777666443 3332 22334445555
Q ss_pred cccCCCCCc-hhHHHHHHHhhcccccchhhhhhhh
Q 026356 200 QINSSNGGD-HLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 200 ~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+....... ........ ..|+.++.+.+.+|.
T Consensus 341 ~l~~~~~~~~d~~~~~~~--~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELIL--RSCPKLTDLSLSYCG 373 (482)
T ss_pred HHHHhhccCchhHhHHHH--hcCCCcchhhhhhhh
Confidence 553332222 11233333 567777777777666
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=133.92 Aligned_cols=192 Identities=22% Similarity=0.345 Sum_probs=156.0
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccC-CCCCcHHH--HHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEF-AQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS 101 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~-c~~i~~~~--~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 101 (240)
.+.+..|..+.+..+.++. ..++.|+.|++++ |..+...+ ...+... +++|++|++++|..++|.+++.++.
T Consensus 192 ~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 192 RLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSI----CRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred HhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhh----cCCcCccchhhhhccCchhHHHHHh
Confidence 3888888888877766665 4899999999998 44444444 3344444 4999999999997799999999999
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC---CCCCCHHHHHHHH
Q 026356 102 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR---YVNMILLGLFYIW 178 (240)
Q Consensus 102 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~---c~~it~~~~~~l~ 178 (240)
.|++|++|.+.+|..+++.++..+++.|++|++|++++|..++|.++..+..+|++|+.|.+.. |..+++.++..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 9999999999999889999999999999999999999999999999999988899888766554 4558888887776
Q ss_pred HhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhccccc
Q 026356 179 SNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHG 224 (240)
Q Consensus 179 ~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L 224 (240)
......+..+...+|+.++.+.+.++...+. +..... .+||.|
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~l--~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDL-GLELSL--RGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCc-chHHHh--cCCccc
Confidence 6442126777889999999999987775555 445555 788888
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.3e-14 Score=116.82 Aligned_cols=166 Identities=18% Similarity=0.227 Sum_probs=117.4
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
..|++||++. ..|+...+..+...| .+|+.|.+-| ..+.|..+..+++ -.+|++|++++|..++..+++.+.+
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C----~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQC----SKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHH----Hhhhhccccc-cccCcHHHHHHhc-cccceeeccccccccchhHHHHHHH
Confidence 3588888887 678888888887776 7888888888 5888877777776 6778888888888888888888888
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCC-CHHHHHHHHHhChhhhhHHHhcCCccceeeccc-CCC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNM-ILLGLFYIWSNNILLMSEFIYHGIRFFQAVQIN-SSN 205 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~i-t~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~-~~~ 205 (240)
+|+.|.+|+++.|...++..-..++.-.++|+.|++++|... .+.-+.. ....|++|..+|++ +..
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t------------L~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST------------LVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH------------HHHhCCceeeeccccccc
Confidence 888888888888854444433334444677888888887331 2221222 23557788888885 444
Q ss_pred CCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356 206 GGDHLAFAYIIETNTYKHGKEKHIIETIKTG 236 (240)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 236 (240)
+.+. -+..+ ..++.|+.|++++||.|.
T Consensus 326 l~~~-~~~~~---~kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 326 LKND-CFQEF---FKFNYLQHLSLSRCYDII 352 (419)
T ss_pred cCch-HHHHH---HhcchheeeehhhhcCCC
Confidence 5443 33333 478899999999998663
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=9.4e-13 Score=110.51 Aligned_cols=192 Identities=20% Similarity=0.195 Sum_probs=122.8
Q ss_pred EeccCCCCCC--hHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCC-CCccEEecCCCCCCcHHHHHHHH--
Q 026356 26 IDLREMNNAG--NRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSL-QDLESLNLNGCQKISDKGIEIIS-- 100 (240)
Q Consensus 26 L~l~~~~~~~--~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~l~-- 100 (240)
|++++|.... ...+..+.. . ++|++|++++| .+++.++..+...+ ..+ ++|+.|++++| .++..+...+.
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~-~-~~L~~L~ls~~-~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n-~l~~~~~~~~~~~ 160 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLR-S-SSLQELKLNNN-GLGDRGLRLLAKGL-KDLPPALEKLVLGRN-RLEGASCEALAKA 160 (319)
T ss_pred EEccCCCCChhHHHHHHHHhc-c-CcccEEEeeCC-ccchHHHHHHHHHH-HhCCCCceEEEcCCC-cCCchHHHHHHHH
Confidence 8888887532 222222221 2 66899999885 57777777766654 334 78888999886 66654444333
Q ss_pred -hcCCCCCEEEecCCCCCCHHHHHHHHHcC---CcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCCHHH
Q 026356 101 -STCPELKVFSIYWNVRVTDIGIQHLVKNC---KHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLG 173 (240)
Q Consensus 101 -~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it~~~ 173 (240)
..+++|++|++++| .+++.++..+...+ ++|++|++++| .+++.++..+.. .+++|+.|++++| .+++.+
T Consensus 161 ~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~ 237 (319)
T cd00116 161 LRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAG 237 (319)
T ss_pred HHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHH
Confidence 34677888888877 68777776665433 48888888888 787776655443 4678888888885 678877
Q ss_pred HHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHH-HHhhcccccchhhhhhhhh
Q 026356 174 LFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYI-IETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 174 ~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~ 234 (240)
+..++.... .+.+.|+.++++++.+.+.. ...+ .....+++|+.+++.++.-
T Consensus 238 ~~~l~~~~~--------~~~~~L~~L~l~~n~i~~~~-~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 238 AAALASALL--------SPNISLLTLSLSCNDITDDG-AKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHHHh--------ccCCCceEEEccCCCCCcHH-HHHHHHHHhcCCCccEEECCCCCC
Confidence 766654411 23455677777777666542 2222 1114456677777666543
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=1.2e-12 Score=109.77 Aligned_cols=125 Identities=26% Similarity=0.266 Sum_probs=52.6
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc---CCCCCEEEecCCCCCCHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
++|+.|++++| .++..+...+...+ ..+++|++|++++| .+++.++..+... .++|++|++++| .+++.+...
T Consensus 137 ~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~ 212 (319)
T cd00116 137 PALEKLVLGRN-RLEGASCEALAKAL-RANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASA 212 (319)
T ss_pred CCceEEEcCCC-cCCchHHHHHHHHH-HhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHH
Confidence 44555555543 24433333333222 22244555555553 4444443333321 234555555544 344443333
Q ss_pred HH---HcCCcCCEEeccCCCCCCHHHHHHHHHhC----CCCcEEeccCCCCCCHHHHHHHH
Q 026356 125 LV---KNCKHIIDLNLSGCKNLLDKSLQLIADNY----QELESLNLTRYVNMILLGLFYIW 178 (240)
Q Consensus 125 l~---~~~~~L~~L~l~~c~~ltd~~l~~l~~~~----~~L~~L~l~~c~~it~~~~~~l~ 178 (240)
+. ..+++|+.|++++| .+++.++..++..+ +.|++|++++| .+++.+...+.
T Consensus 213 l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~ 271 (319)
T cd00116 213 LAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLA 271 (319)
T ss_pred HHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHH
Confidence 22 23344555555554 44444444443332 34555555543 44444444333
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.3e-13 Score=108.77 Aligned_cols=188 Identities=16% Similarity=0.255 Sum_probs=126.7
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 105 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 105 (240)
+||+... ++...+..+ +++|..|+.|++.+ ..++|.-...++++ .+|+.|++++|+++|..+++.+...|+.
T Consensus 190 lDLS~s~-it~stl~~i-Ls~C~kLk~lSlEg-~~LdD~I~~~iAkN-----~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 190 LDLSNSV-ITVSTLHGI-LSQCSKLKNLSLEG-LRLDDPIVNTIAKN-----SNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhcchhh-eeHHHHHHH-HHHHHhhhhccccc-cccCcHHHHHHhcc-----ccceeeccccccccchhHHHHHHHhhhh
Confidence 8887544 666666655 46999999999999 78999999988875 7899999999999999999999999999
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCC-CCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh-h
Q 026356 106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI-L 183 (240)
Q Consensus 106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c-~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~-~ 183 (240)
|.+|+++||...++..-..++.--++|..|+++|| .++.+..+..+++.||+|..||++.|..+++.-+..+.+-.. .
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 99999999954444422223334457777777777 233445566666777777777777777777755544443211 0
Q ss_pred h-----------hhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccc
Q 026356 184 L-----------MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGK 225 (240)
Q Consensus 184 ~-----------l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~ 225 (240)
. -.-+.+...|.|..+++..+-... .+..+. ..+|+|+
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt--~mel~~--e~~~~lk 390 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT--TMELLK--EMLSHLK 390 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccccCch--HHHHHH--HhCcccc
Confidence 0 001233555667777665443322 233344 4556554
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=4.8e-10 Score=92.27 Aligned_cols=194 Identities=13% Similarity=0.155 Sum_probs=104.8
Q ss_pred EeccCCCCCChHHHHHhh--hhcCCCCceEeccCCCCCcHHHHHHHHHHc--------cCCCCCccEEecCCCCCCcHHH
Q 026356 26 IDLREMNNAGNRLVAALS--IPRYRHVREINLEFAQDIEDRHLELLKTKC--------LGSLQDLESLNLNGCQKISDKG 95 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~--~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~--------~~~~~~L~~L~l~~c~~l~~~~ 95 (240)
+||+.|. ++.+++..+. ++++.+|++|.+..| .++..+-..+++.. ...-++|+.+.... +.+.+.+
T Consensus 97 ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~g 173 (382)
T KOG1909|consen 97 LDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGG 173 (382)
T ss_pred eeccccc-cCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-ccccccc
Confidence 6666665 3333333331 345666666666664 35555444433311 12235566666555 3444333
Q ss_pred HH---HHHhcCCCCCEEEecCCCCCCHHHHHH---HHHcCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCC
Q 026356 96 IE---IISSTCPELKVFSIYWNVRVTDIGIQH---LVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRY 166 (240)
Q Consensus 96 ~~---~l~~~~~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c 166 (240)
.. ...+.+|.|+++.++++ .+...|+.. -...|++|+.|++.++ ..+..+-..++. .+++|+.|++++|
T Consensus 174 a~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc
Confidence 32 23335566677766655 444444422 2346677777777777 566655555554 3556677777776
Q ss_pred CCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 167 VNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 167 ~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+.+.|..++... + -.+.|.|+.+.+.++.+....+......-..-|.|+.|++..|-
T Consensus 252 -ll~~~Ga~a~~~a----l----~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 252 -LLENEGAIAFVDA----L----KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred -ccccccHHHHHHH----H----hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 5666666555543 1 13356677777777766655444444333446777777776554
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=4.8e-09 Score=86.49 Aligned_cols=174 Identities=16% Similarity=0.202 Sum_probs=113.2
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh------------cCCCCCEEEecC
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS------------TCPELKVFSIYW 113 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~------------~~~~L~~L~l~~ 113 (240)
.+|.|+.|+||. +-++..+++.+.... ..+..|++|.+++| ++...+-..++. .-+.|+.+....
T Consensus 90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll-~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 90 GCPKLQKLDLSD-NAFGPKGIRGLEELL-SSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred cCCceeEeeccc-cccCccchHHHHHHH-HhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 455777777776 556666655555443 33577777777776 555544333222 234577777765
Q ss_pred CCCCCHH---HHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhH
Q 026356 114 NVRVTDI---GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLGLFYIWSNNILLMSE 187 (240)
Q Consensus 114 ~~~l~~~---~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~ 187 (240)
+ .+.+. .+....+.+|.|+.+.+.++ .|...++..++. +||+|+.||+.. +-+|..|=.+++..
T Consensus 167 N-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~Laka------- 236 (382)
T KOG1909|consen 167 N-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKA------- 236 (382)
T ss_pred c-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHH-------
Confidence 5 44433 34445567788888888888 677766655443 588899999988 56777777777653
Q ss_pred HHhcCCccceeecccCCCCCchhHHHHHHH-hhcccccchhhhhhhhh
Q 026356 188 FIYHGIRFFQAVQINSSNGGDHLAFAYIIE-TNTYKHGKEKHIIETIK 234 (240)
Q Consensus 188 l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~ 234 (240)
+...++|+.++++++.+.+......+-. ....|+|+.|.+.+|.-
T Consensus 237 --L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 237 --LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred --hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 3446788899998888887744333321 14578999998877653
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.3e-09 Score=92.19 Aligned_cols=185 Identities=19% Similarity=0.137 Sum_probs=83.2
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 105 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 105 (240)
|||+.+=.-++..+..+. .++|+|+.|+++. +.+....-...-. -+++|+.|.+++| +++..-+..+...+|+
T Consensus 151 LdLS~NL~~nw~~v~~i~-eqLp~Le~LNls~-Nrl~~~~~s~~~~----~l~~lK~L~l~~C-Gls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 151 LDLSRNLFHNWFPVLKIA-EQLPSLENLNLSS-NRLSNFISSNTTL----LLSHLKQLVLNSC-GLSWKDVQWILLTFPS 223 (505)
T ss_pred ecchhhhHHhHHHHHHHH-Hhcccchhccccc-ccccCCccccchh----hhhhhheEEeccC-CCCHHHHHHHHHhCCc
Confidence 555555544555555443 3556666666655 2221110000000 1255566666665 5555555555555666
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhh
Q 026356 106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLM 185 (240)
Q Consensus 106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l 185 (240)
|+.|++.++..+.-..... .....|++|+++++..++-. .......+|.|+.|+++.| .+++-........+
T Consensus 224 l~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~-~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~---- 295 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFD-QGYKVGTLPGLNQLNLSST-GIASIAEPDVESLD---- 295 (505)
T ss_pred HHHhhhhcccccceecchh--hhhhHHhhccccCCcccccc-cccccccccchhhhhcccc-CcchhcCCCccchh----
Confidence 6666665542211111100 11234556666655333322 1122223555666555553 33332111110001
Q ss_pred hHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhh
Q 026356 186 SEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE 231 (240)
Q Consensus 186 ~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 231 (240)
..+..+.|+.|+++-+.+.+=-.+... ...++|+.|.+..
T Consensus 296 ---kt~~f~kL~~L~i~~N~I~~w~sl~~l---~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 296 ---KTHTFPKLEYLNISENNIRDWRSLNHL---RTLENLKHLRITL 335 (505)
T ss_pred ---hhcccccceeeecccCccccccccchh---hccchhhhhhccc
Confidence 124556788888877766332122222 3456666666543
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.7e-09 Score=87.60 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=87.0
Q ss_pred hhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCc-HHHHHHHHhcCCCCCEEEecCCCCC--CHH
Q 026356 44 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKIS-DKGIEIISSTCPELKVFSIYWNVRV--TDI 120 (240)
Q Consensus 44 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~l~~~~~~L~~L~l~~~~~l--~~~ 120 (240)
.+++..|+...+..| .+.+.+.+..+..| ++++.|++|+ +-++ -..+..++..+|+|+.|+++.+.-. +++
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~----~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKIL----PNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhC----Ccceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 357888999999985 58887776665555 9999999998 3433 3456788888999999999876211 111
Q ss_pred HHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCC
Q 026356 121 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 167 (240)
Q Consensus 121 ~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~ 167 (240)
... ...++|+.|.+++| +++...+..+...+|+|+.|.+.++.
T Consensus 191 ~~~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 191 NTT---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred cch---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 111 15578999999999 89998888888889999999999853
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.68 E-value=9.5e-08 Score=87.83 Aligned_cols=139 Identities=15% Similarity=0.211 Sum_probs=73.9
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCH------------
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD------------ 145 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd------------ 145 (240)
.+|++|+++|-..+...-...++..+|+|++|.+.+- .+....+..+..++|+|.+||+|++ ++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHH
Confidence 4556666655333333334455555566666666543 3333335555555556666666655 4443
Q ss_pred -----------HHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHH
Q 026356 146 -----------KSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAY 214 (240)
Q Consensus 146 -----------~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~ 214 (240)
..+..|+ ++++|+.||+|.-....+.-.....-. ....+|+|+.+|.+....... .+..
T Consensus 200 L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYle--------c~~~LpeLrfLDcSgTdi~~~-~le~ 269 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLE--------CGMVLPELRFLDCSGTDINEE-ILEE 269 (699)
T ss_pred HhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHH--------hcccCccccEEecCCcchhHH-HHHH
Confidence 2233333 366788888877444444311111111 335577888888887766666 4555
Q ss_pred HHHhhcccccchhhhh
Q 026356 215 IIETNTYKHGKEKHII 230 (240)
Q Consensus 215 ~~~~~~~~~L~~L~l~ 230 (240)
+. +.-|+|+..-.-
T Consensus 270 ll--~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 270 LL--NSHPNLQQIAAL 283 (699)
T ss_pred HH--HhCccHhhhhhh
Confidence 55 455666665544
No 14
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.56 E-value=5.3e-08 Score=93.67 Aligned_cols=40 Identities=5% Similarity=0.015 Sum_probs=22.8
Q ss_pred cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
.+++.|+.++++.+.+.... ...+ ..+++|+.|++.+|..
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~--~~~~--~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKI--PVAL--TSLPRLQVLQLWSNKF 344 (968)
T ss_pred cCCCCCcEEECCCCccCCcC--ChhH--hcCCCCCEEECcCCCC
Confidence 44556666666665554431 1222 4567777777776654
No 15
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.56 E-value=8.9e-08 Score=92.14 Aligned_cols=41 Identities=7% Similarity=-0.023 Sum_probs=27.3
Q ss_pred hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
+.+++.|+.++++.+.+.... ...+ ..+++|+.|++.++..
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~--p~~l--~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEI--PKNL--GKHNNLTVLDLSTNNL 368 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcC--ChHH--hCCCCCcEEECCCCee
Confidence 355677888888877765442 2223 5678888888877653
No 16
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=8e-08 Score=73.85 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=77.7
Q ss_pred CccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCC
Q 026356 79 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 158 (240)
Q Consensus 79 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L 158 (240)
.++.++-++| .|...|++++-. ++.++.|.+.+|..+.|.++..+....++|+.|++++|+.||+.++..|.+ +++|
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNL 178 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhh
Confidence 4788888885 899999998875 899999999999999999999999888899999999999999999998865 8899
Q ss_pred cEEeccCCCCCCH
Q 026356 159 ESLNLTRYVNMIL 171 (240)
Q Consensus 159 ~~L~l~~c~~it~ 171 (240)
+.|.+.+-+.+..
T Consensus 179 r~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 179 RRLHLYDLPYVAN 191 (221)
T ss_pred HHHHhcCchhhhc
Confidence 9999887544443
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.52 E-value=9.3e-07 Score=81.42 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=106.1
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+++|...+.......++ ..+|+|+.|.+++ ..+..+.+..+..++ |+|.+||+|++ ++++- .-++ +++
T Consensus 126 ~LdI~G~~~~s~~W~~kig-~~LPsL~sL~i~~-~~~~~~dF~~lc~sF----pNL~sLDIS~T-nI~nl--~GIS-~Lk 195 (699)
T KOG3665|consen 126 HLDISGSELFSNGWPKKIG-TMLPSLRSLVISG-RQFDNDDFSQLCASF----PNLRSLDISGT-NISNL--SGIS-RLK 195 (699)
T ss_pred hcCccccchhhccHHHHHh-hhCcccceEEecC-ceecchhHHHHhhcc----CccceeecCCC-CccCc--HHHh-ccc
Confidence 3889988877777777776 4899999999998 556666676666555 99999999995 66653 2233 488
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHH--HHHH--HhCCCCcEEeccCCCCCCHHHHHHHHHh
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIA--DNYQELESLNLTRYVNMILLGLFYIWSN 180 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l--~~l~--~~~~~L~~L~l~~c~~it~~~~~~l~~~ 180 (240)
+|+.|.+-+-.--+...+..+. .+++|+.||+|.-...++.-+ ..+. ..+|+|+.||.++ +.+++.-+..+-..
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~s 273 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNS 273 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHh
Confidence 8888888755323335555555 678999999998755444311 1121 1488999999998 68888888777765
Q ss_pred ChhhhhHHH
Q 026356 181 NILLMSEFI 189 (240)
Q Consensus 181 ~~~~l~~l~ 189 (240)
-+. ++.+.
T Consensus 274 H~~-L~~i~ 281 (699)
T KOG3665|consen 274 HPN-LQQIA 281 (699)
T ss_pred Ccc-Hhhhh
Confidence 444 55443
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.47 E-value=1.1e-07 Score=92.85 Aligned_cols=16 Identities=6% Similarity=0.137 Sum_probs=9.7
Q ss_pred cCCCCceEeccCCCCC
Q 026356 46 RYRHVREINLEFAQDI 61 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i 61 (240)
.+++|+.|++++|..+
T Consensus 655 ~l~~Le~L~L~~c~~L 670 (1153)
T PLN03210 655 MATNLETLKLSDCSSL 670 (1153)
T ss_pred cCCcccEEEecCCCCc
Confidence 4566666666666544
No 19
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=9.6e-07 Score=67.99 Aligned_cols=87 Identities=24% Similarity=0.362 Sum_probs=45.4
Q ss_pred CceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 026356 50 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNC 129 (240)
Q Consensus 50 L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 129 (240)
++.++-+. ..|...|++.+-. ++.|+.|.+..|..+.|.+++-++.-.++|+.|+|++|+.||+.|+.-+. .+
T Consensus 103 IeaVDAsd-s~I~~eGle~L~~-----l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~l 175 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHLRD-----LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KL 175 (221)
T ss_pred EEEEecCC-chHHHHHHHHHhc-----cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hh
Confidence 34444444 2355555554422 35555555555555555555555555555555555555555555555554 34
Q ss_pred CcCCEEeccCCCCC
Q 026356 130 KHIIDLNLSGCKNL 143 (240)
Q Consensus 130 ~~L~~L~l~~c~~l 143 (240)
++|+.|.+.+-+.+
T Consensus 176 knLr~L~l~~l~~v 189 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYV 189 (221)
T ss_pred hhhHHHHhcCchhh
Confidence 55555555544333
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.27 E-value=2.3e-07 Score=81.61 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=67.2
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 105 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 105 (240)
|++++|. +.+-.+.. +.++++|+++++.+ +.++. +.+ +.....+|++|++.+ +.|+.-.-+.++. .|.
T Consensus 83 LdlsnNk-l~~id~~~--f~nl~nLq~v~l~~-N~Lt~-----IP~-f~~~sghl~~L~L~~-N~I~sv~se~L~~-l~a 150 (873)
T KOG4194|consen 83 LDLSNNK-LSHIDFEF--FYNLPNLQEVNLNK-NELTR-----IPR-FGHESGHLEKLDLRH-NLISSVTSEELSA-LPA 150 (873)
T ss_pred eeccccc-cccCcHHH--HhcCCcceeeeecc-chhhh-----ccc-ccccccceeEEeeec-cccccccHHHHHh-Hhh
Confidence 6666665 33322222 23666777766665 32222 111 112235677777766 4555444444443 666
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH
Q 026356 106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL 171 (240)
Q Consensus 106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~ 171 (240)
|++||++.+ .++.--...+. .-++|++|+++++ .||+-...... ++.+|..|.|++ +++|.
T Consensus 151 lrslDLSrN-~is~i~~~sfp-~~~ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsr-Nritt 211 (873)
T KOG4194|consen 151 LRSLDLSRN-LISEIPKPSFP-AKVNIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSR-NRITT 211 (873)
T ss_pred hhhhhhhhc-hhhcccCCCCC-CCCCceEEeeccc-ccccccccccc-ccchheeeeccc-Ccccc
Confidence 777777754 33322221121 2236778888777 67765444332 245677777777 45554
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.22 E-value=6.5e-07 Score=68.56 Aligned_cols=130 Identities=25% Similarity=0.334 Sum_probs=39.5
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
+...+++|++++ +.|.. ++.+.. .+.+|+.|+++++ .++. ++.+. .++.|++|+++++ .+++-+ ..+
T Consensus 17 n~~~~~~L~L~~-n~I~~--Ie~L~~----~l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRG-NQIST--IENLGA----TLDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGL 83 (175)
T ss_dssp ----------------------S--T----T-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-C-HHH
T ss_pred cccccccccccc-ccccc--ccchhh----hhcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cch
Confidence 344577788877 33433 222221 2367788888874 5553 23333 2677888888766 454421 123
Q ss_pred HHcCCcCCEEeccCCCCCCH-HHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecc
Q 026356 126 VKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQI 201 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd-~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l 201 (240)
...+|+|++|+++++ .|.+ ..+..+. .+|+|+.|++.++ -+++.. .-+...+..+|.|+.+|-
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~-~l~~L~~L~L~~N-Pv~~~~----------~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLS-SLPKLRVLSLEGN-PVCEKK----------NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGG-G-TT--EEE-TT--GGGGST----------THHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHH-cCCCcceeeccCC-cccchh----------hHHHHHHHHcChhheeCC
Confidence 345678888888777 5654 2223332 4777888888774 343210 012234455666666654
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.12 E-value=5.6e-07 Score=68.94 Aligned_cols=126 Identities=20% Similarity=0.306 Sum_probs=51.1
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|+|+++..- .++.++ ..+.+|+.|++++ +.|..- ..+ ..+++|+.|++++ +.+++-+ ..+...+
T Consensus 22 ~~L~L~~n~I~---~Ie~L~-~~l~~L~~L~Ls~-N~I~~l--~~l-----~~L~~L~~L~L~~-N~I~~i~-~~l~~~l 87 (175)
T PF14580_consen 22 RELNLRGNQIS---TIENLG-ATLDKLEVLDLSN-NQITKL--EGL-----PGLPRLKTLDLSN-NRISSIS-EGLDKNL 87 (175)
T ss_dssp -----------------S---TT-TT--EEE-TT-S--S----TT---------TT--EEE--S-S---S-C-HHHHHH-
T ss_pred ccccccccccc---cccchh-hhhcCCCEEECCC-CCCccc--cCc-----cChhhhhhcccCC-CCCCccc-cchHHhC
Confidence 45899988732 233333 2568899999999 455542 111 2348999999999 6887632 2344469
Q ss_pred CCCCEEEecCCCCCCHH-HHHHHHHcCCcCCEEeccCCCCCCHHH--HHHHHHhCCCCcEEeccCC
Q 026356 104 PELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLDKS--LQLIADNYQELESLNLTRY 166 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~c~~ltd~~--l~~l~~~~~~L~~L~l~~c 166 (240)
|+|++|+++++ ++.+- .+..+ ..+|+|+.|++.+++ +++.. -..+...+|+|+.||-...
T Consensus 88 p~L~~L~L~~N-~I~~l~~l~~L-~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLNELEPL-SSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCC-cCCChHHhHHH-HcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 99999999987 55442 23344 478999999999994 55422 2334456999999998764
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.06 E-value=2.1e-06 Score=84.00 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=58.2
Q ss_pred CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356 76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 155 (240)
Q Consensus 76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~ 155 (240)
.+++|+.|++++|..+..-.- ...+++|+.|++++|..+.. +....++|+.|+++++ .++.-.. .+ ..+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~---~~~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n-~i~~iP~-si-~~l 868 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPT---GINLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRT-GIEEVPW-WI-EKF 868 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCC---CCCccccCEEECCCCCcccc-----ccccccccCEeECCCC-CCccChH-HH-hcC
Confidence 346666666666654332100 01355666666666654421 2222346677777666 5543211 12 347
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecc
Q 026356 156 QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQI 201 (240)
Q Consensus 156 ~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l 201 (240)
++|+.|++++|++++.-.. .......++.+.+.+|+.|..+.+
T Consensus 869 ~~L~~L~L~~C~~L~~l~~---~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRVSL---NISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCCEEECCCCCCcCccCc---ccccccCCCeeecCCCcccccccC
Confidence 7888888888877654211 111122245556677776665544
No 24
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=98.01 E-value=3.1e-06 Score=74.80 Aligned_cols=194 Identities=14% Similarity=0.200 Sum_probs=104.4
Q ss_pred EeccCCCCCChHHHHHh--hhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh--
Q 026356 26 IDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS-- 101 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l--~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~-- 101 (240)
+.|.+|. +.+.....+ .+.-.+.|+.|++++ +.+++.+...+.......-+.++.|.+..| .+++.+...++.
T Consensus 92 L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 92 LSLANNR-LGDRGAEELAQALKTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVL 168 (478)
T ss_pred hhhhhCc-cccchHHHHHHHhcccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHH
Confidence 5566665 333333333 234566777777777 567777777777755333355666777776 666666555443
Q ss_pred -cCCCCCEEEecCCCCCCHHHHHHHHHc-------CCcCCEEeccCCCCCCHHHHHHHHHh---CCC-CcEEeccCCCCC
Q 026356 102 -TCPELKVFSIYWNVRVTDIGIQHLVKN-------CKHIIDLNLSGCKNLLDKSLQLIADN---YQE-LESLNLTRYVNM 169 (240)
Q Consensus 102 -~~~~L~~L~l~~~~~l~~~~~~~l~~~-------~~~L~~L~l~~c~~ltd~~l~~l~~~---~~~-L~~L~l~~c~~i 169 (240)
.+..+++++++.| .+.+.+...+.+. ..+++.|++.+| .+++..+..+... .++ +..+++.. +.+
T Consensus 169 ~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l 245 (478)
T KOG4308|consen 169 EKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKL 245 (478)
T ss_pred hcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCc
Confidence 2555677777665 3434444443322 235777777777 6776666655543 223 44566665 466
Q ss_pred CHHHHHHHHHhChhhhhHHHhcCC-ccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 170 ILLGLFYIWSNNILLMSEFIYHGI-RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 170 t~~~~~~l~~~~~~~l~~l~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
.|.|+..+.+. +... +.++.+++..+.+.+...-...-....|+.++++.+...+.
T Consensus 246 ~d~g~~~L~~~---------l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 246 GDVGVEKLLPC---------LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred chHHHHHHHHH---------hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 67666665543 1111 33445555555555442211111114455555555554443
No 25
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.90 E-value=0.00027 Score=57.27 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=26.7
Q ss_pred CcCCEEeccCCCCCCHHHHHHHHH----hCCCCcEEeccCCCCCCHHHHHHHHH
Q 026356 130 KHIIDLNLSGCKNLLDKSLQLIAD----NYQELESLNLTRYVNMILLGLFYIWS 179 (240)
Q Consensus 130 ~~L~~L~l~~c~~ltd~~l~~l~~----~~~~L~~L~l~~c~~it~~~~~~l~~ 179 (240)
.+|+.+.+.++ .|..+++..++. ++++|+.||+.. +-+|..|-.+++.
T Consensus 185 ~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~ 236 (388)
T COG5238 185 ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLAD 236 (388)
T ss_pred cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHH
Confidence 45556666655 566555544332 356666666666 3555555555544
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.88 E-value=0.00016 Score=58.53 Aligned_cols=194 Identities=14% Similarity=0.138 Sum_probs=108.4
Q ss_pred EEeccCCCCCChHHHHHhh--hhcCCCCceEeccCC--CCCcHH---HHHHHHHHccCCCCCccEEecCCCCCCcHHH--
Q 026356 25 VIDLREMNNAGNRLVAALS--IPRYRHVREINLEFA--QDIEDR---HLELLKTKCLGSLQDLESLNLNGCQKISDKG-- 95 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~--~~~~~~L~~L~l~~c--~~i~~~---~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~-- 95 (240)
-++|+||. ++.+....++ +.+-.+|+..+++.- ....|. .+..+.... ..||+|+..++|. +-+....
T Consensus 34 evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL-lkcp~l~~v~LSD-NAfg~~~~e 110 (388)
T COG5238 34 EVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL-LKCPRLQKVDLSD-NAFGSEFPE 110 (388)
T ss_pred EEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHH-hcCCcceeeeccc-cccCcccch
Confidence 37888887 5555555554 234556777777642 112222 233333322 4568888888887 3444333
Q ss_pred -HHHHHhcCCCCCEEEecCCCCCCHHHHH-------HHH-----HcCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCc
Q 026356 96 -IEIISSTCPELKVFSIYWNVRVTDIGIQ-------HLV-----KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELE 159 (240)
Q Consensus 96 -~~~l~~~~~~L~~L~l~~~~~l~~~~~~-------~l~-----~~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~ 159 (240)
+..+..+-..|++|.+++| .++..+-. .++ ..-|.|+....+.+ ++-..+....+. .-.+|+
T Consensus 111 ~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHENLK 188 (388)
T ss_pred HHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcCce
Confidence 2233334667888888876 55433221 121 24467888887777 555444433332 225788
Q ss_pred EEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHH-Hhhcccccchhhhhhhh
Q 026356 160 SLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII-ETNTYKHGKEKHIIETI 233 (240)
Q Consensus 160 ~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~ 233 (240)
.+.+.+ +.|...|+..++-. -+..+..|+.+++..+..+.. +..+.. .-..-+.|++|.+..|-
T Consensus 189 ~vki~q-NgIrpegv~~L~~~--------gl~y~~~LevLDlqDNtft~~-gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 189 EVKIQQ-NGIRPEGVTMLAFL--------GLFYSHSLEVLDLQDNTFTLE-GSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred eEEeee-cCcCcchhHHHHHH--------HHHHhCcceeeeccccchhhh-hHHHHHHHhcccchhhhccccchh
Confidence 888887 68888888776643 234456667777755555443 222222 11334556777666664
No 27
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.80 E-value=4.3e-06 Score=73.89 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=48.8
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
.+|+.|++.+ +.|.....+.++.. +.|++|++|. +.++.-...... .-.++++|+++++ .+++-+...+.
T Consensus 125 ghl~~L~L~~-N~I~sv~se~L~~l-----~alrslDLSr-N~is~i~~~sfp-~~~ni~~L~La~N-~It~l~~~~F~- 194 (873)
T KOG4194|consen 125 GHLEKLDLRH-NLISSVTSEELSAL-----PALRSLDLSR-NLISEIPKPSFP-AKVNIKKLNLASN-RITTLETGHFD- 194 (873)
T ss_pred cceeEEeeec-cccccccHHHHHhH-----hhhhhhhhhh-chhhcccCCCCC-CCCCceEEeeccc-ccccccccccc-
Confidence 4577777776 55655555544432 5566666655 333321111111 1234566666554 45444433332
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
++.+|-.|.++.+ ++|--.... ++++|+|+.|+|.+
T Consensus 195 ~lnsL~tlkLsrN-rittLp~r~-Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 195 SLNSLLTLKLSRN-RITTLPQRS-FKRLPKLESLDLNR 230 (873)
T ss_pred ccchheeeecccC-cccccCHHH-hhhcchhhhhhccc
Confidence 3335555555555 444322221 12345555555544
No 28
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.66 E-value=5.9e-05 Score=38.64 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHH
Q 026356 155 YQELESLNLTRYVNMILLGLFYIWS 179 (240)
Q Consensus 155 ~~~L~~L~l~~c~~it~~~~~~l~~ 179 (240)
|++|+.|++++|.++||.|+..++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 6899999999999999999998864
No 29
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.65 E-value=2.9e-05 Score=68.75 Aligned_cols=168 Identities=16% Similarity=0.165 Sum_probs=104.2
Q ss_pred EeccCCCCCChHHHHHhh--hhcC-CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 26 IDLREMNNAGNRLVAALS--IPRY-RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~--~~~~-~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
|+++++. +++.+...+. +... +.++.|.+..| .+++.+...++..... ...++.++++.+ .+...+...+++.
T Consensus 120 L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~-~~~l~~l~l~~n-~l~~~g~~~l~~~ 195 (478)
T KOG4308|consen 120 LDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEK-NEHLTELDLSLN-GLIELGLLVLSQA 195 (478)
T ss_pred hhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhc-ccchhHHHHHhc-ccchhhhHHHhhh
Confidence 8888887 4466665553 2222 34677777775 4777777777776644 677777777775 4445555444432
Q ss_pred -------CCCCCEEEecCCCCCCHHHHHHHHHcC---Cc-CCEEeccCCCCCCHHHHHHHHHhCC----CCcEEeccCCC
Q 026356 103 -------CPELKVFSIYWNVRVTDIGIQHLVKNC---KH-IIDLNLSGCKNLLDKSLQLIADNYQ----ELESLNLTRYV 167 (240)
Q Consensus 103 -------~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~-L~~L~l~~c~~ltd~~l~~l~~~~~----~L~~L~l~~c~ 167 (240)
..++++|++++| .++......+.... +. +..|++..+ .+.|.++..+....+ .++.+++++|
T Consensus 196 l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~n- 272 (478)
T KOG4308|consen 196 LESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRN- 272 (478)
T ss_pred hhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcC-
Confidence 334677777777 56666655554333 33 555777777 677777776665433 4477777774
Q ss_pred CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCch
Q 026356 168 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH 209 (240)
Q Consensus 168 ~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~ 209 (240)
.+++.|...++.. ...|++++.+.++.+.+.+.
T Consensus 273 si~~~~~~~L~~~---------l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 273 SITEKGVRDLAEV---------LVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred CccccchHHHHHH---------HhhhHHHHHhhcccCccccH
Confidence 6777776666542 24455666677777776666
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.40 E-value=4.5e-05 Score=70.69 Aligned_cols=123 Identities=20% Similarity=0.314 Sum_probs=62.6
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 105 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 105 (240)
|.+.+|. +++..+..+. .+.+||.|++++ +.++......+ .+++.|++|++|| ++++.-. ..++ .|+.
T Consensus 364 LylanN~-Ltd~c~p~l~--~~~hLKVLhLsy-NrL~~fpas~~-----~kle~LeeL~LSG-NkL~~Lp-~tva-~~~~ 431 (1081)
T KOG0618|consen 364 LYLANNH-LTDSCFPVLV--NFKHLKVLHLSY-NRLNSFPASKL-----RKLEELEELNLSG-NKLTTLP-DTVA-NLGR 431 (1081)
T ss_pred HHHhcCc-ccccchhhhc--cccceeeeeecc-cccccCCHHHH-----hchHHhHHHhccc-chhhhhh-HHHH-hhhh
Confidence 6666565 5666666543 677788888887 54443222222 2236778888888 5665433 2222 2444
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
|++|...++ .+... ..++ ..++|+.+|+|.+ .++...+....- .|+|++||++++
T Consensus 432 L~tL~ahsN-~l~~f--Pe~~-~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 432 LHTLRAHSN-QLLSF--PELA-QLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGN 486 (1081)
T ss_pred hHHHhhcCC-ceeec--hhhh-hcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCC
Confidence 444444333 11111 1121 3456666666655 555444433211 256666666664
No 31
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.18 E-value=4.9e-05 Score=68.06 Aligned_cols=39 Identities=10% Similarity=-0.084 Sum_probs=22.9
Q ss_pred cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
.-|..|+.+.++.+++...- ..+ .-++.|+.|+++..|.
T Consensus 336 cRC~kL~kL~L~~NrLiTLP---eaI--HlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLP---EAI--HLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhHHHHHhcccccceeech---hhh--hhcCCcceeeccCCcC
Confidence 44556777777666654431 112 3457778888777653
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00085 Score=55.16 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=43.9
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcH-HHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIED-RHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
+||.+|..-.+..+.++. .++|.|+.|+++. +.+.. .+-. +....+|+.|-+.| +.++...........|
T Consensus 76 lDL~~N~iSdWseI~~il-e~lP~l~~LNls~-N~L~s~I~~l------p~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAIL-EQLPALTTLNLSC-NSLSSDIKSL------PLPLKNLRVLVLNG-TGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhcccchhccHHHHHHHH-hcCccceEeeccC-CcCCCccccC------cccccceEEEEEcC-CCCChhhhhhhhhcch
Confidence 666666655565555554 3666777777665 33322 1111 12335666666766 4666666655555666
Q ss_pred CCCEEEecC
Q 026356 105 ELKVFSIYW 113 (240)
Q Consensus 105 ~L~~L~l~~ 113 (240)
.+++|.++.
T Consensus 147 ~vtelHmS~ 155 (418)
T KOG2982|consen 147 KVTELHMSD 155 (418)
T ss_pred hhhhhhhcc
Confidence 666665554
No 33
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.90 E-value=5.5e-05 Score=67.77 Aligned_cols=13 Identities=0% Similarity=-0.128 Sum_probs=7.8
Q ss_pred cccccchhhhhhh
Q 026356 220 TYKHGKEKHIIET 232 (240)
Q Consensus 220 ~~~~L~~L~l~~c 232 (240)
.|+.|+.|.+...
T Consensus 337 RC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHN 349 (1255)
T ss_pred hhHHHHHhccccc
Confidence 4666666666543
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.84 E-value=0.0011 Score=63.12 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=38.1
Q ss_pred cCeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCc--HHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHH
Q 026356 22 VPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIE--DRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 99 (240)
Q Consensus 22 ~~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~--~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 99 (240)
..++|||++|...+. ++. +++.+-+|++|++++ +.+. ..++..+ ..|.+|++........ +..+
T Consensus 572 ~LrVLDLs~~~~l~~--LP~-~I~~Li~LryL~L~~-t~I~~LP~~l~~L--------k~L~~Lnl~~~~~l~~--~~~i 637 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSK--LPS-SIGELVHLRYLDLSD-TGISHLPSGLGNL--------KKLIYLNLEVTGRLES--IPGI 637 (889)
T ss_pred ceEEEECCCCCccCc--CCh-HHhhhhhhhcccccC-CCccccchHHHHH--------Hhhheecccccccccc--ccch
Confidence 345577776654332 111 123566677777776 4454 2233322 5566666655322111 1222
Q ss_pred HhcCCCCCEEEecC
Q 026356 100 SSTCPELKVFSIYW 113 (240)
Q Consensus 100 ~~~~~~L~~L~l~~ 113 (240)
...+++|+.|.+..
T Consensus 638 ~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 638 LLELQSLRVLRLPR 651 (889)
T ss_pred hhhcccccEEEeec
Confidence 23356667666654
No 35
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.00032 Score=57.59 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=47.6
Q ss_pred eEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHH-HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCC
Q 026356 52 EINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK 130 (240)
Q Consensus 52 ~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 130 (240)
-|.+.+|..-+...+..+++.+ ..++.+++.+ +.+++. -+..|..++|.|+.|+++.+ .+.. .+..+..-..
T Consensus 49 llvln~~~id~~gd~~~~~~~~----~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~ 121 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSV----TDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLK 121 (418)
T ss_pred hheecCCCCCcchhHHHHHHHh----hhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCccccc
Confidence 4444454323333444444444 5566666665 455442 23444455666666666533 2211 1122211123
Q ss_pred cCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 131 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 131 ~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
+|+.|-+.+. .++...........|.++.|.++.
T Consensus 122 nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 122 NLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred ceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhcc
Confidence 5555555555 454444443334444444444443
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.78 E-value=9.7e-05 Score=68.57 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=71.0
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
+.|+.|.+.+ +.++|.++..+.. +++|+.|++++ +.++...-..+. +++.|++|++||+ +++.-. .-..
T Consensus 359 ~~Lq~Lylan-N~Ltd~c~p~l~~-----~~hLKVLhLsy-NrL~~fpas~~~-kle~LeeL~LSGN-kL~~Lp--~tva 427 (1081)
T KOG0618|consen 359 AALQELYLAN-NHLTDSCFPVLVN-----FKHLKVLHLSY-NRLNSFPASKLR-KLEELEELNLSGN-KLTTLP--DTVA 427 (1081)
T ss_pred HHHHHHHHhc-Ccccccchhhhcc-----ccceeeeeecc-cccccCCHHHHh-chHHhHHHhcccc-hhhhhh--HHHH
Confidence 3455566665 5566666665433 46777777777 444322222222 3666777777776 443322 1112
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 205 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~ 205 (240)
.|+.|+.|...++ .+..-. .++ ..+.|+.+|++. ++++.-.+.+... -++|+.++++++.
T Consensus 428 ~~~~L~tL~ahsN-~l~~fP--e~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-------------~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSN-QLLSFP--ELA-QLPQLKVLDLSC-NNLSEVTLPEALP-------------SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhHHHhhcCC-ceeech--hhh-hcCcceEEeccc-chhhhhhhhhhCC-------------CcccceeeccCCc
Confidence 5566777776666 443222 333 378899999985 5665543332211 1556677776554
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.69 E-value=0.00083 Score=61.34 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=87.0
Q ss_pred hhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC-----C-----CCCEEEecC
Q 026356 44 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC-----P-----ELKVFSIYW 113 (240)
Q Consensus 44 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~-----~-----~L~~L~l~~ 113 (240)
+..+..|++|.+++|+--.-.|+..+- .+|++|-..+ +-+++.++...| . .|...+.++
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr-------~qLe~LIC~~----Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsy 173 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELR-------HQLEKLICHN----SLDALRHVFASCGGDISNSPVWNKLATASFSY 173 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHH-------Hhhhhhhhhc----cHHHHHHHHHHhccccccchhhhhHhhhhcch
Confidence 335677888888887543444555443 3555555433 223333333222 1 133444443
Q ss_pred CCCC--CHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH---HHHHH-----HHHhChh
Q 026356 114 NVRV--TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL---LGLFY-----IWSNNIL 183 (240)
Q Consensus 114 ~~~l--~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~---~~~~~-----l~~~~~~ 183 (240)
+ .+ -|+.+ +-.+.|++|+++++ .+++.. .|. .+++|++|||+++ .++. .+... +...+..
T Consensus 174 N-~L~~mD~SL----qll~ale~LnLshN-k~~~v~--~Lr-~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 174 N-RLVLMDESL----QLLPALESLNLSHN-KFTKVD--NLR-RLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred h-hHHhHHHHH----HHHHHhhhhccchh-hhhhhH--HHH-hcccccccccccc-hhccccccchhhhhheeeeecccH
Confidence 3 22 13333 33467899999998 676544 343 4888999999884 3321 11111 1111111
Q ss_pred hhhHH-HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 184 LMSEF-IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 184 ~l~~l-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
++++ .+..++.|+.+|++++-+.+...+. ++ -.+..|++|++.+.|
T Consensus 244 -l~tL~gie~LksL~~LDlsyNll~~hseL~-pL--wsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 244 -LTTLRGIENLKSLYGLDLSYNLLSEHSELE-PL--WSLSSLIVLWLEGNP 290 (1096)
T ss_pred -HHhhhhHHhhhhhhccchhHhhhhcchhhh-HH--HHHHHHHHHhhcCCc
Confidence 3322 2344456777888887776653222 22 355678888887765
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.49 E-value=7.8e-05 Score=46.69 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=15.1
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
.+++|+.|+++++ .++.-... ...++++|++|++++
T Consensus 23 ~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 23 NLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSN 58 (61)
T ss_dssp TGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETS
T ss_pred CCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcC
Confidence 3445555555544 34321111 112345555555555
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.44 E-value=0.0044 Score=58.12 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=44.5
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
++|+.|++.. ++++.. +...++|++|+++++ +++.- ....++|+.|+++++ .++. +..
T Consensus 222 ~~L~~L~L~~-N~Lt~L---------P~lp~~Lk~LdLs~N-~LtsL-----P~lp~sL~~L~Ls~N-~L~~-----Lp~ 279 (788)
T PRK15387 222 AHITTLVIPD-NNLTSL---------PALPPELRTLEVSGN-QLTSL-----PVLPPGLLELSIFSN-PLTH-----LPA 279 (788)
T ss_pred cCCCEEEccC-CcCCCC---------CCCCCCCcEEEecCC-ccCcc-----cCcccccceeeccCC-chhh-----hhh
Confidence 3577777776 445421 112367777777773 55421 122346666666655 2321 111
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
..++|+.|+++++ .++.- ....++|+.|++++
T Consensus 280 lp~~L~~L~Ls~N-~Lt~L-----P~~p~~L~~LdLS~ 311 (788)
T PRK15387 280 LPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSD 311 (788)
T ss_pred chhhcCEEECcCC-ccccc-----cccccccceeECCC
Confidence 2235556666665 44421 11234566666655
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.34 E-value=0.00014 Score=45.54 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=6.5
Q ss_pred cCCcCCEEeccCC
Q 026356 128 NCKHIIDLNLSGC 140 (240)
Q Consensus 128 ~~~~L~~L~l~~c 140 (240)
.+++|++|++++|
T Consensus 47 ~l~~L~~L~l~~N 59 (61)
T PF13855_consen 47 NLPNLRYLDLSNN 59 (61)
T ss_dssp TSTTESEEEETSS
T ss_pred CCCCCCEEeCcCC
Confidence 4445555555544
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.30 E-value=0.0012 Score=56.07 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=48.6
Q ss_pred HhCCCCcEEeccCCCCCCHHHHHHHH-----------HhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcc
Q 026356 153 DNYQELESLNLTRYVNMILLGLFYIW-----------SNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTY 221 (240)
Q Consensus 153 ~~~~~L~~L~l~~c~~it~~~~~~l~-----------~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 221 (240)
+.+++|++|++++ +.++.-.-..|. .+....+++-.+.|+..|+.+++..+.++.. ..+ .+ +..
T Consensus 271 ~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~-~~~-aF--~~~ 345 (498)
T KOG4237|consen 271 KKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV-APG-AF--QTL 345 (498)
T ss_pred hhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE-ecc-cc--ccc
Confidence 4578999999998 577653222211 1222223444778888899999999888876 222 23 355
Q ss_pred cccchhhhhhhh
Q 026356 222 KHGKEKHIIETI 233 (240)
Q Consensus 222 ~~L~~L~l~~c~ 233 (240)
.+|.+|++-+.|
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 677777776544
No 42
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.25 E-value=0.0038 Score=31.05 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=2.7
Q ss_pred CCEEeccCC
Q 026356 132 IIDLNLSGC 140 (240)
Q Consensus 132 L~~L~l~~c 140 (240)
|++|++++|
T Consensus 4 L~~L~l~~n 12 (24)
T PF13516_consen 4 LETLDLSNN 12 (24)
T ss_dssp -SEEE-TSS
T ss_pred CCEEEccCC
Confidence 333333333
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.23 E-value=0.0043 Score=36.05 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=4.2
Q ss_pred CCCCcEEeccC
Q 026356 155 YQELESLNLTR 165 (240)
Q Consensus 155 ~~~L~~L~l~~ 165 (240)
+++|+.|++++
T Consensus 23 l~~L~~L~l~~ 33 (44)
T PF12799_consen 23 LPNLETLNLSN 33 (44)
T ss_dssp CTTSSEEEETS
T ss_pred CCCCCEEEecC
Confidence 33333333333
No 44
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0016 Score=52.31 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=46.6
Q ss_pred CCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHcCCcCCEEeccCCCCCCH--HHHHHH
Q 026356 75 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLD--KSLQLI 151 (240)
Q Consensus 75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~c~~ltd--~~l~~l 151 (240)
..+++|+.|.++.-.--...++..++..||+|++|+++++ ++.+ +.++.+ +...+|.+|++..| ..+. .--..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl-~~l~nL~~Ldl~n~-~~~~l~dyre~v 138 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPL-KELENLKSLDLFNC-SVTNLDDYREKV 138 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchh-hhhcchhhhhcccC-CccccccHHHHH
Confidence 3456777777766212233445666666777777777766 3432 222222 24456777777777 3332 111223
Q ss_pred HHhCCCCcEEeccC
Q 026356 152 ADNYQELESLNLTR 165 (240)
Q Consensus 152 ~~~~~~L~~L~l~~ 165 (240)
+.-.++|+.||-..
T Consensus 139 f~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCD 152 (260)
T ss_pred HHHhhhhccccccc
Confidence 33456666666443
No 45
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.04 E-value=0.0028 Score=59.40 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=5.6
Q ss_pred cCCEEeccCC
Q 026356 131 HIIDLNLSGC 140 (240)
Q Consensus 131 ~L~~L~l~~c 140 (240)
+|+.|++++|
T Consensus 284 sL~~L~Ls~N 293 (754)
T PRK15370 284 ELRYLSVYDN 293 (754)
T ss_pred CCcEEECCCC
Confidence 4555555555
No 46
>PLN03150 hypothetical protein; Provisional
Probab=95.94 E-value=0.011 Score=54.47 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=6.6
Q ss_pred cCCcCCEEeccCC
Q 026356 128 NCKHIIDLNLSGC 140 (240)
Q Consensus 128 ~~~~L~~L~l~~c 140 (240)
.+++|+.|+++++
T Consensus 488 ~L~~L~~L~Ls~N 500 (623)
T PLN03150 488 QLTSLRILNLNGN 500 (623)
T ss_pred cCCCCCEEECcCC
Confidence 3445555555554
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.87 E-value=0.007 Score=50.02 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=60.2
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH-HHHHHHHHhC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL-LGLFYIWSNN 181 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~-~~~~~l~~~~ 181 (240)
...|++|+++++ .++. +..-..-.|.++.|+++++ +|+...- ++ .+++|..||++++ .++. .|+-. --++
T Consensus 283 Wq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~N-~i~~v~n--La-~L~~L~~LDLS~N-~Ls~~~Gwh~-KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQN-RIRTVQN--LA-ELPQLQLLDLSGN-LLAECVGWHL-KLGN 353 (490)
T ss_pred Hhhhhhcccccc-chhh--hhhhhhhccceeEEecccc-ceeeehh--hh-hcccceEeecccc-hhHhhhhhHh-hhcC
Confidence 445677777765 3321 1111223467777777777 4543221 32 3667777777774 3333 23321 1111
Q ss_pred hhh-------hhHHHhcCCcc---ceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 182 ILL-------MSEFIYHGIRF---FQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 182 ~~~-------l~~l~~~~~~~---L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+. +. .++|+.. |..+++..+++.... ..-....+|-|+.|.+++.|
T Consensus 354 IKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELD---EVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred EeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHH---HhcccccccHHHHHhhcCCC
Confidence 111 11 3345544 556667666665442 22233567778888777766
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.83 E-value=0.0023 Score=58.62 Aligned_cols=78 Identities=28% Similarity=0.355 Sum_probs=40.5
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 157 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~ 157 (240)
+.+++|+++. +++++- ..+ ..|+.|++|||+++ .+.. +..+...--.|..|+++++ .++ .+..+. ++.+
T Consensus 187 ~ale~LnLsh-Nk~~~v--~~L-r~l~~LkhLDlsyN-~L~~--vp~l~~~gc~L~~L~lrnN-~l~--tL~gie-~Lks 255 (1096)
T KOG1859|consen 187 PALESLNLSH-NKFTKV--DNL-RRLPKLKHLDLSYN-CLRH--VPQLSMVGCKLQLLNLRNN-ALT--TLRGIE-NLKS 255 (1096)
T ss_pred HHhhhhccch-hhhhhh--HHH-Hhcccccccccccc-hhcc--ccccchhhhhheeeeeccc-HHH--hhhhHH-hhhh
Confidence 5666677766 455542 222 24667777777654 2211 1111111113666666666 342 233332 4678
Q ss_pred CcEEeccCC
Q 026356 158 LESLNLTRY 166 (240)
Q Consensus 158 L~~L~l~~c 166 (240)
|+.||++++
T Consensus 256 L~~LDlsyN 264 (1096)
T KOG1859|consen 256 LYGLDLSYN 264 (1096)
T ss_pred hhccchhHh
Confidence 888888873
No 49
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.003 Score=51.54 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=41.0
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCH---HHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD---IGI 122 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~---~~~ 122 (240)
..+.|+.|.|+- ++|+. +..+. .|.+|+.|.|.. +.|.+..--...+.+|+|+.|.|..+|-... ..-
T Consensus 39 kMp~lEVLsLSv-NkIss--L~pl~-----rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 39 KMPLLEVLSLSV-NKISS--LAPLQ-----RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred hcccceeEEeec-ccccc--chhHH-----HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 556666666665 43332 22222 225666666655 3554433222233566666666665543322 223
Q ss_pred HHHHHcCCcCCEEe
Q 026356 123 QHLVKNCKHIIDLN 136 (240)
Q Consensus 123 ~~l~~~~~~L~~L~ 136 (240)
....+.+|+|+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 34455666666664
No 50
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.78 E-value=0.011 Score=29.32 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=8.3
Q ss_pred CCccEEecCCCCCCcHHHHHHH
Q 026356 78 QDLESLNLNGCQKISDKGIEII 99 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l 99 (240)
++|++|++++| .+++.+++.|
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 34444444443 3444444443
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.58 E-value=0.01 Score=49.12 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCH-HHHHHHHHhCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQ 156 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd-~~l~~l~~~~~ 156 (240)
++|++|++|+ +.++. +.-....+-+++.|.++++.--+-.|+..+ =+|..|+++++ .|.. +.+..+. ++|
T Consensus 329 ~~L~~LDLS~-N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LSGL~KL----YSLvnLDl~~N-~Ie~ldeV~~IG-~LP 399 (490)
T KOG1259|consen 329 PQLQLLDLSG-NLLAE--CVGWHLKLGNIKTLKLAQNKIETLSGLRKL----YSLVNLDLSSN-QIEELDEVNHIG-NLP 399 (490)
T ss_pred ccceEeeccc-chhHh--hhhhHhhhcCEeeeehhhhhHhhhhhhHhh----hhheecccccc-chhhHHHhcccc-ccc
Confidence 5555555555 23322 112222344555555554421112233222 24555555555 3422 1111121 255
Q ss_pred CCcEEeccC
Q 026356 157 ELESLNLTR 165 (240)
Q Consensus 157 ~L~~L~l~~ 165 (240)
.|+.+.+.+
T Consensus 400 CLE~l~L~~ 408 (490)
T KOG1259|consen 400 CLETLRLTG 408 (490)
T ss_pred HHHHHhhcC
Confidence 555555554
No 52
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.56 E-value=0.026 Score=53.09 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=61.8
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
++|+.|++++ +.++.... ...++|+.|+++++ .++.-.. . ..++|+.|++++| .++.-. ..+
T Consensus 199 ~~L~~L~Ls~-N~LtsLP~--------~l~~nL~~L~Ls~N-~LtsLP~-~---l~~~L~~L~Ls~N-~L~~LP-~~l-- 260 (754)
T PRK15370 199 EQITTLILDN-NELKSLPE--------NLQGNIKTLYANSN-QLTSIPA-T---LPDTIQEMELSIN-RITELP-ERL-- 260 (754)
T ss_pred cCCcEEEecC-CCCCcCCh--------hhccCCCEEECCCC-ccccCCh-h---hhccccEEECcCC-ccCcCC-hhH--
Confidence 4699999998 56663211 11268999999985 5553111 1 1347999999987 454211 111
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 170 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it 170 (240)
..+|+.|+++++ .++. +.. .-+++|+.|++++| .++
T Consensus 261 -~s~L~~L~Ls~N-~L~~--LP~--~l~~sL~~L~Ls~N-~Lt 296 (754)
T PRK15370 261 -PSALQSLDLFHN-KISC--LPE--NLPEELRYLSVYDN-SIR 296 (754)
T ss_pred -hCCCCEEECcCC-ccCc--ccc--ccCCCCcEEECCCC-ccc
Confidence 248999999988 7763 211 11358999999986 554
No 53
>PLN03150 hypothetical protein; Provisional
Probab=95.55 E-value=0.022 Score=52.59 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=66.4
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 105 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 105 (240)
|+|+++...+ ..... +..+++|+.|++++ +.+....-..+ ..+++|+.|+++++ .++...-..++ .+++
T Consensus 423 L~L~~n~L~g-~ip~~--i~~L~~L~~L~Ls~-N~l~g~iP~~~-----~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~ 491 (623)
T PLN03150 423 LGLDNQGLRG-FIPND--ISKLRHLQSINLSG-NSIRGNIPPSL-----GSITSLEVLDLSYN-SFNGSIPESLG-QLTS 491 (623)
T ss_pred EECCCCCccc-cCCHH--HhCCCCCCEEECCC-CcccCcCChHH-----hCCCCCCEEECCCC-CCCCCCchHHh-cCCC
Confidence 7777776322 11122 34789999999999 45543222222 34589999999995 66644333444 4899
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCC
Q 026356 106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL 143 (240)
Q Consensus 106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l 143 (240)
|+.|+++++ .++...-..+.....++..+++.++..+
T Consensus 492 L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 492 LRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCEEECcCC-cccccCChHHhhccccCceEEecCCccc
Confidence 999999987 4543322333333456778888877544
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.45 E-value=0.013 Score=34.03 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCH
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 145 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd 145 (240)
++|++|+++++ .+++ +......+++|+.|+++++ .+++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCCC
Confidence 57889999877 6765 3332457889999999988 6764
No 55
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.41 E-value=0.014 Score=54.86 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=36.0
Q ss_pred CcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHH-----HHHHHHHhChhhhhHH--HhcCCccceeeccc
Q 026356 130 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL-----GLFYIWSNNILLMSEF--IYHGIRFFQAVQIN 202 (240)
Q Consensus 130 ~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~-----~~~~l~~~~~~~l~~l--~~~~~~~L~~l~l~ 202 (240)
++|+.|+++++ .++. +. ...++|+.|+++++ .++.- .+..+.-.... +..+ .+..++.|..++++
T Consensus 382 ~~L~~LdLs~N-~Lt~--LP---~l~s~L~~LdLS~N-~LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 382 SGLKELIVSGN-RLTS--LP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccceEEecCC-cccC--CC---CcccCCCEEEccCC-cCCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECC
Confidence 36677777776 4542 11 12356777887774 44421 11111111000 1111 23456677788888
Q ss_pred CCCCCch
Q 026356 203 SSNGGDH 209 (240)
Q Consensus 203 ~~~~~~~ 209 (240)
.+.+...
T Consensus 454 ~N~Ls~~ 460 (788)
T PRK15387 454 GNPLSER 460 (788)
T ss_pred CCCCCch
Confidence 7777654
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.02 Score=46.87 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=65.0
Q ss_pred CCcHHHHHHHHh--cCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCC
Q 026356 90 KISDKGIEIISS--TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 167 (240)
Q Consensus 90 ~l~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~ 167 (240)
++|...+...++ .+.+.+.|+..|| .++|-.+. +.+|.|+.|.++-+ .|+. +..+ ..|.+|++|.|.. +
T Consensus 3 kLTe~mV~~raK~sdl~~vkKLNcwg~-~L~DIsic---~kMp~lEVLsLSvN-kIss--L~pl-~rCtrLkElYLRk-N 73 (388)
T KOG2123|consen 3 KLTESMVYIRAKCSDLENVKKLNCWGC-GLDDISIC---EKMPLLEVLSLSVN-KISS--LAPL-QRCTRLKELYLRK-N 73 (388)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhcccCC-CccHHHHH---HhcccceeEEeecc-cccc--chhH-HHHHHHHHHHHHh-c
Confidence 355555554444 2345678888887 77776643 46788888888777 5542 2333 2477788887776 3
Q ss_pred CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC---chhHHHHHHHhhcccccchhh
Q 026356 168 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG---DHLAFAYIIETNTYKHGKEKH 228 (240)
Q Consensus 168 ~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~~~~~~L~~L~ 228 (240)
.|.+..-.+ -+.++|.|+.|-+.-+.-. ..-.-..++ ..+|+|++|+
T Consensus 74 ~I~sldEL~------------YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL--R~LPnLkKLD 123 (388)
T KOG2123|consen 74 CIESLDELE------------YLKNLPSLRTLWLDENPCCGEAGQNYRRKVL--RVLPNLKKLD 123 (388)
T ss_pred ccccHHHHH------------HHhcCchhhhHhhccCCcccccchhHHHHHH--HHcccchhcc
Confidence 554422111 2355566666655322222 111122334 5678888876
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.55 E-value=0.023 Score=45.78 Aligned_cols=90 Identities=20% Similarity=0.297 Sum_probs=62.1
Q ss_pred hhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcH-HHHHHHHhcCCCCCEEEecCCC--CCCHH
Q 026356 44 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNV--RVTDI 120 (240)
Q Consensus 44 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~L~~L~l~~~~--~l~~~ 120 (240)
++.+++|+.|.++.-+.-...++..++..+ |+|+++++++ +++.+ ..+..+. ..++|..|++..|+ ++++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~----P~l~~l~ls~-Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy 134 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKA----PNLKVLNLSG-NKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY 134 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhC----CceeEEeecC-Cccccccccchhh-hhcchhhhhcccCCccccccH
Confidence 357788999999973224455788888876 9999999999 68875 2333333 37789999999884 23332
Q ss_pred HHHHHHHcCCcCCEEeccCC
Q 026356 121 GIQHLVKNCKHIIDLNLSGC 140 (240)
Q Consensus 121 ~~~~l~~~~~~L~~L~l~~c 140 (240)
- ..+...+|+|..|+-..+
T Consensus 135 r-e~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 135 R-EKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred H-HHHHHHhhhhcccccccc
Confidence 2 334456788888876544
No 58
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.88 E-value=0.098 Score=26.99 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=3.4
Q ss_pred CCEEeccCC
Q 026356 132 IIDLNLSGC 140 (240)
Q Consensus 132 L~~L~l~~c 140 (240)
|++|+++++
T Consensus 4 L~~LdL~~N 12 (28)
T smart00368 4 LRELDLSNN 12 (28)
T ss_pred cCEEECCCC
Confidence 333333333
No 59
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.30 E-value=0.11 Score=49.95 Aligned_cols=19 Identities=5% Similarity=-0.039 Sum_probs=13.1
Q ss_pred ccccchhhhhhhhhhhccc
Q 026356 221 YKHGKEKHIIETIKTGQQL 239 (240)
Q Consensus 221 ~~~L~~L~l~~c~~~~d~~ 239 (240)
.|+|+.|++..|..+.|.+
T Consensus 769 ~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cCcccEEEEecccccccCC
Confidence 4667777777777776653
No 60
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.12 E-value=0.0058 Score=46.50 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=18.3
Q ss_pred cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhh
Q 026356 191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE 231 (240)
Q Consensus 191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 231 (240)
..+.+|+.+.+..+.+... .. +...+..|++|+|.+
T Consensus 147 g~lt~lqil~lrdndll~l---pk--eig~lt~lrelhiqg 182 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLLSL---PK--EIGDLTRLRELHIQG 182 (264)
T ss_pred hhhcceeEEeeccCchhhC---cH--HHHHHHHHHHHhccc
Confidence 4445566665544433322 11 114455777777764
No 61
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.30 E-value=0.21 Score=43.15 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=32.0
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhh
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLM 185 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l 185 (240)
++.+|..|++..+ .+ ..+..+..++.+|++|++++. .+....-..+..+....+
T Consensus 503 nm~nL~tLDL~nN-dl--q~IPp~LgnmtnL~hLeL~gN-pfr~Pr~~iLmkgT~aiL 556 (565)
T KOG0472|consen 503 NMRNLTTLDLQNN-DL--QQIPPILGNMTNLRHLELDGN-PFRQPRHQILMKGTAAIL 556 (565)
T ss_pred hhhhcceeccCCC-ch--hhCChhhccccceeEEEecCC-ccCCCHHHHhccChHHHH
Confidence 5678888888877 44 233334456888888888883 554333333334444333
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.21 E-value=0.22 Score=43.44 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=17.2
Q ss_pred CCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCC
Q 026356 49 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKI 91 (240)
Q Consensus 49 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l 91 (240)
+|++|.+++|.++...- ... .++|++|++++|..+
T Consensus 73 sLtsL~Lsnc~nLtsLP-----~~L---P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 73 ELTEITIENCNNLTTLP-----GSI---PEGLEKLTVCHCPEI 107 (426)
T ss_pred CCcEEEccCCCCcccCC-----chh---hhhhhheEccCcccc
Confidence 46666666665432110 000 145666666666443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.81 E-value=0.09 Score=41.11 Aligned_cols=87 Identities=22% Similarity=0.354 Sum_probs=54.0
Q ss_pred CCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHH-HHHHHHcCCcCCEEeccCCCCCCHHHHH--HH
Q 026356 75 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIG-IQHLVKNCKHIIDLNLSGCKNLLDKSLQ--LI 151 (240)
Q Consensus 75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L~l~~c~~ltd~~l~--~l 151 (240)
..++.|..|.++. +.|+.-. ..+....|+|..|.+.++ ++..-+ +..+ ..||+|++|.+-++ .+++..-. .+
T Consensus 61 p~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~~L~LtnN-si~~l~dl~pL-a~~p~L~~Ltll~N-pv~~k~~YR~yv 135 (233)
T KOG1644|consen 61 PHLPRLHTLLLNN-NRITRID-PDLDTFLPNLKTLILTNN-SIQELGDLDPL-ASCPKLEYLTLLGN-PVEHKKNYRLYV 135 (233)
T ss_pred CCccccceEEecC-Ccceeec-cchhhhccccceEEecCc-chhhhhhcchh-ccCCccceeeecCC-chhcccCceeEE
Confidence 3457788888887 5666422 133446788888888876 343322 3333 37888999888877 45443211 12
Q ss_pred HHhCCCCcEEeccCC
Q 026356 152 ADNYQELESLNLTRY 166 (240)
Q Consensus 152 ~~~~~~L~~L~l~~c 166 (240)
....|+|+.||+.+-
T Consensus 136 l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKV 150 (233)
T ss_pred EEecCcceEeehhhh
Confidence 224788999998773
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.40 E-value=0.21 Score=39.12 Aligned_cols=101 Identities=19% Similarity=0.326 Sum_probs=63.3
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHH-HHHHHhcCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG-IEIISSTCP 104 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~~~~ 104 (240)
+||+.|+.... ..+++.+.|..|.+.. +.|+...-. +. ..+++|+.|.+.+ +.+..-+ +..++ .||
T Consensus 47 iDLtdNdl~~l-----~~lp~l~rL~tLll~n-NrIt~I~p~-L~----~~~p~l~~L~Ltn-Nsi~~l~dl~pLa-~~p 113 (233)
T KOG1644|consen 47 IDLTDNDLRKL-----DNLPHLPRLHTLLLNN-NRITRIDPD-LD----TFLPNLKTLILTN-NSIQELGDLDPLA-SCP 113 (233)
T ss_pred ecccccchhhc-----ccCCCccccceEEecC-Ccceeeccc-hh----hhccccceEEecC-cchhhhhhcchhc-cCC
Confidence 66666553221 1245778899999888 666553221 11 2238899999988 4554433 34444 499
Q ss_pred CCCEEEecCCCCCCHH-HHH-HHHHcCCcCCEEeccCC
Q 026356 105 ELKVFSIYWNVRVTDI-GIQ-HLVKNCKHIIDLNLSGC 140 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~-~~~-~l~~~~~~L~~L~l~~c 140 (240)
.|+.|.+-+++ +++. ..+ .+....|+|+.||...-
T Consensus 114 ~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 99999998874 4432 222 23456789999998865
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.02 E-value=0.3 Score=42.80 Aligned_cols=78 Identities=27% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 156 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~ 156 (240)
++|+.|++++ +.|++ +..+.. ++.|+.|+++++. +++ .++. .+++|+.++++++ .+++..-.. ...+.
T Consensus 118 ~~L~~L~ls~-N~I~~--i~~l~~-l~~L~~L~l~~N~-i~~~~~~~----~l~~L~~l~l~~n-~i~~ie~~~-~~~~~ 186 (414)
T KOG0531|consen 118 VNLQVLDLSF-NKITK--LEGLST-LTLLKELNLSGNL-ISDISGLE----SLKSLKLLDLSYN-RIVDIENDE-LSELI 186 (414)
T ss_pred hcchheeccc-ccccc--ccchhh-ccchhhheeccCc-chhccCCc----cchhhhcccCCcc-hhhhhhhhh-hhhcc
Confidence 5666666666 45543 112222 3346666666552 221 1111 1456666666666 444332211 23355
Q ss_pred CCcEEeccCC
Q 026356 157 ELESLNLTRY 166 (240)
Q Consensus 157 ~L~~L~l~~c 166 (240)
.++.+.+.+.
T Consensus 187 ~l~~l~l~~n 196 (414)
T KOG0531|consen 187 SLEELDLGGN 196 (414)
T ss_pred chHHHhccCC
Confidence 6666666653
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=85.86 E-value=0.46 Score=41.16 Aligned_cols=60 Identities=27% Similarity=0.417 Sum_probs=28.5
Q ss_pred CccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCH
Q 026356 79 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 145 (240)
Q Consensus 79 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd 145 (240)
+|+.|++++ +.+.... .. ...+++|+.|+++++ .+++..-.. ...++|+.|+++++ .+++
T Consensus 141 nL~~L~l~~-N~i~~l~-~~-~~~l~~L~~L~l~~N-~l~~l~~~~--~~~~~L~~L~ls~N-~i~~ 200 (394)
T COG4886 141 NLKELDLSD-NKIESLP-SP-LRNLPNLKNLDLSFN-DLSDLPKLL--SNLSNLNNLDLSGN-KISD 200 (394)
T ss_pred hcccccccc-cchhhhh-hh-hhccccccccccCCc-hhhhhhhhh--hhhhhhhheeccCC-cccc
Confidence 566666665 3443321 01 123666666666655 343322211 13455666666666 4443
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=84.63 E-value=0.69 Score=40.02 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=14.9
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 114 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~ 114 (240)
++|+.|+++.+ .+++.... ....++|+.|+++++
T Consensus 163 ~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N 196 (394)
T COG4886 163 PNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGN 196 (394)
T ss_pred ccccccccCCc-hhhhhhhh--hhhhhhhhheeccCC
Confidence 55555555553 43332211 112444555555543
No 68
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.59 E-value=2.4 Score=38.11 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=56.9
Q ss_pred CCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCC--CCHHHHHHHHHcCCcCCEEeccCCCCCCH-----HH
Q 026356 75 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR--VTDIGIQHLVKNCKHIIDLNLSGCKNLLD-----KS 147 (240)
Q Consensus 75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~--l~~~~~~~l~~~~~~L~~L~l~~c~~ltd-----~~ 147 (240)
.+.+.+.+++++.-.-..-.++..+++..|+|..|+|+++.. -++..+.++ ....|++|-+.|++-.++ +.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHH
Confidence 455888888888843334567778888889999999987621 223333333 345788888888853332 33
Q ss_pred HHHHHHhCCCCcEEec
Q 026356 148 LQLIADNYQELESLNL 163 (240)
Q Consensus 148 l~~l~~~~~~L~~L~l 163 (240)
+.++.+..|.|..||=
T Consensus 293 v~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLDG 308 (585)
T ss_pred HHHHHHhcchheeecC
Confidence 4456667888888773
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.57 E-value=0.61 Score=20.92 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=2.5
Q ss_pred cEEeccC
Q 026356 159 ESLNLTR 165 (240)
Q Consensus 159 ~~L~l~~ 165 (240)
+.|++++
T Consensus 4 ~~L~l~~ 10 (17)
T PF13504_consen 4 RTLDLSN 10 (17)
T ss_dssp SEEEETS
T ss_pred CEEECCC
Confidence 3333333
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=82.56 E-value=0.64 Score=34.36 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=18.9
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
...+|-++.|+++++ .|+|...+ ++ .++.|+.|++++
T Consensus 73 t~kf~t~t~lNl~~n-eisdvPeE-~A-am~aLr~lNl~~ 109 (177)
T KOG4579|consen 73 TIKFPTATTLNLANN-EISDVPEE-LA-AMPALRSLNLRF 109 (177)
T ss_pred hhccchhhhhhcchh-hhhhchHH-Hh-hhHHhhhccccc
Confidence 334445555555555 45544444 32 255566666655
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=82.10 E-value=0.59 Score=34.53 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=29.8
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 140 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 140 (240)
.+|+..++++ +.+.+. -..+....|.++.|+++++ .++|.... + ..+|.|++|+++.+
T Consensus 53 ~el~~i~ls~-N~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPeE-~-Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKF-PKKFTIKFPTATTLNLANN-EISDVPEE-L-AAMPALRSLNLRFN 110 (177)
T ss_pred ceEEEEeccc-chhhhC-CHHHhhccchhhhhhcchh-hhhhchHH-H-hhhHHhhhcccccC
Confidence 4555556555 222211 1133344556666666654 45554444 2 25566777777666
No 72
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=79.74 E-value=1.4 Score=38.09 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL 171 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~ 171 (240)
+|+|+.|+++++ +++...-..+ ++...+++|.+..+ .|. ..-..+..+...|+.|++.+ ++||-
T Consensus 273 L~~L~~lnlsnN-~i~~i~~~aF-e~~a~l~eL~L~~N-~l~-~v~~~~f~~ls~L~tL~L~~-N~it~ 336 (498)
T KOG4237|consen 273 LPNLRKLNLSNN-KITRIEDGAF-EGAAELQELYLTRN-KLE-FVSSGMFQGLSGLKTLSLYD-NQITT 336 (498)
T ss_pred cccceEeccCCC-ccchhhhhhh-cchhhhhhhhcCcc-hHH-HHHHHhhhccccceeeeecC-CeeEE
Confidence 456666666654 3433222111 23334555555444 331 11122334566777777777 45543
No 73
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.96 E-value=4.5 Score=36.51 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=56.4
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh-cCCCCCEEEecCCCCCCH-----
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS-TCPELKVFSIYWNVRVTD----- 119 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~-~~~~L~~L~l~~~~~l~~----- 119 (240)
+.+.+..++|+...-..-+++..++... |+|+.|+|++-...-+... .+-+ ....|++|.+.|+|-.++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~a----pklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIA----PKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhc----chhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhH
Confidence 6778888888873333556667777655 9999999998311111111 2221 355689999998764332
Q ss_pred HHHHHHHHcCCcCCEEe
Q 026356 120 IGIQHLVKNCKHIIDLN 136 (240)
Q Consensus 120 ~~~~~l~~~~~~L~~L~ 136 (240)
+.+..+.+.+|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 45677778899998885
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=75.89 E-value=2.9 Score=36.62 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=48.3
Q ss_pred CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356 76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 155 (240)
Q Consensus 76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~ 155 (240)
.+.++++|++++| .++.- ..--++|++|.+++|..++... ..+ .++|+.|++++|..+. .+ .
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-----P~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~-----sL---P 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-----PVLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEIS-----GL---P 111 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-----CCCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCccccc-----cc---c
Confidence 3489999999998 54432 2223369999999987753211 011 2589999999997664 12 3
Q ss_pred CCCcEEeccC
Q 026356 156 QELESLNLTR 165 (240)
Q Consensus 156 ~~L~~L~l~~ 165 (240)
++|+.|+++.
T Consensus 112 ~sLe~L~L~~ 121 (426)
T PRK15386 112 ESVRSLEIKG 121 (426)
T ss_pred cccceEEeCC
Confidence 5788888764
No 75
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=75.56 E-value=11 Score=31.88 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=14.7
Q ss_pred HHHHHcCCcCCEEeccCCCCCCHHHHHHHHH
Q 026356 123 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 153 (240)
Q Consensus 123 ~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~ 153 (240)
..++..++.|++|++.++ .||..++..+..
T Consensus 248 a~ml~~n~sl~slnvesn-FItg~gi~a~~~ 277 (353)
T KOG3735|consen 248 AEMLKENKSLTSLNVESN-FITGLGIMALLR 277 (353)
T ss_pred HHHHhhcchhhheecccc-ccccHHHHHHHH
Confidence 333444455555555555 555555444443
No 76
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=71.49 E-value=2.4 Score=36.92 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=60.2
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH--------HHHHHHHHhChhhhhHHH---hcCCc
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL--------LGLFYIWSNNILLMSEFI---YHGIR 194 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~--------~~~~~l~~~~~~~l~~l~---~~~~~ 194 (240)
...+++|..|+++++ -+.+-..+. .....|+.|++++. ++.. .++..+...... +..+. ..+++
T Consensus 431 l~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMR 505 (565)
T ss_pred HHhhhcceeeecccc-hhhhcchhh--hhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcccc-ccccChHHhhhhh
Confidence 356678999999988 565543332 12446999999984 4432 122222222111 22222 45667
Q ss_pred cceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 195 FFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 195 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
+|..+++..+.+.. +.... .++.+|+.|.+.+.|
T Consensus 506 nL~tLDL~nNdlq~---IPp~L--gnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQQ---IPPIL--GNMTNLRHLELDGNP 539 (565)
T ss_pred hcceeccCCCchhh---CChhh--ccccceeEEEecCCc
Confidence 78899888776643 34556 789999999998766
No 77
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=69.66 E-value=19 Score=30.49 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCC---cCCEEeccCCCCCCHHHHHH---HHHhCCCCcEEeccCC
Q 026356 93 DKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK---HIIDLNLSGCKNLLDKSLQL---IADNYQELESLNLTRY 166 (240)
Q Consensus 93 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~---~L~~L~l~~c~~ltd~~l~~---l~~~~~~L~~L~l~~c 166 (240)
+..++-+-..=+.++++++++..+++...++.+...+. ..+.+.+-+. ..+|-...+ +...++.|++|++..
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnves- 264 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVES- 264 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheeccc-
Confidence 34455555566789999999888888888877765443 5666666666 444443333 334588999999998
Q ss_pred CCCCHHHHHHHHHh
Q 026356 167 VNMILLGLFYIWSN 180 (240)
Q Consensus 167 ~~it~~~~~~l~~~ 180 (240)
+-||..|+..+...
T Consensus 265 nFItg~gi~a~~~a 278 (353)
T KOG3735|consen 265 NFITGLGIMALLRA 278 (353)
T ss_pred cccccHHHHHHHHH
Confidence 68999998877654
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=69.48 E-value=1.3 Score=38.77 Aligned_cols=85 Identities=31% Similarity=0.460 Sum_probs=56.0
Q ss_pred CCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCC-HHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHH
Q 026356 75 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVT-DIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD 153 (240)
Q Consensus 75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~ 153 (240)
..+.+|+.|++.+ +.+.. +..+...+++|+.|+++++ .|+ -.++..+ +.|+.|+++++ .|++..- + .
T Consensus 92 ~~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l----~~L~~L~l~~N-~i~~~~~--~-~ 159 (414)
T KOG0531|consen 92 SKLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFN-KITKLEGLSTL----TLLKELNLSGN-LISDISG--L-E 159 (414)
T ss_pred ccccceeeeeccc-cchhh--cccchhhhhcchheecccc-ccccccchhhc----cchhhheeccC-cchhccC--C-c
Confidence 4457888888887 45543 3342335899999999987 454 3454443 45999999999 5654221 1 1
Q ss_pred hCCCCcEEeccCCCCCCHH
Q 026356 154 NYQELESLNLTRYVNMILL 172 (240)
Q Consensus 154 ~~~~L~~L~l~~c~~it~~ 172 (240)
.++.|+.++++++ .+++.
T Consensus 160 ~l~~L~~l~l~~n-~i~~i 177 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN-RIVDI 177 (414)
T ss_pred cchhhhcccCCcc-hhhhh
Confidence 2678999999985 55553
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=67.68 E-value=2.1 Score=20.40 Aligned_cols=9 Identities=44% Similarity=0.556 Sum_probs=3.9
Q ss_pred CcEEeccCC
Q 026356 158 LESLNLTRY 166 (240)
Q Consensus 158 L~~L~l~~c 166 (240)
|+.|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444443
No 80
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=55.71 E-value=11 Score=18.87 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.3
Q ss_pred CEEEec
Q 026356 107 KVFSIY 112 (240)
Q Consensus 107 ~~L~l~ 112 (240)
++|.+.
T Consensus 3 KtL~L~ 8 (26)
T PF07723_consen 3 KTLHLD 8 (26)
T ss_pred eEEEee
Confidence 333333
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=49.02 E-value=16 Score=17.87 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.9
Q ss_pred cCCEEeccCC
Q 026356 131 HIIDLNLSGC 140 (240)
Q Consensus 131 ~L~~L~l~~c 140 (240)
+|+.|+++++
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00369 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 4445555444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=49.02 E-value=16 Score=17.87 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.9
Q ss_pred cCCEEeccCC
Q 026356 131 HIIDLNLSGC 140 (240)
Q Consensus 131 ~L~~L~l~~c 140 (240)
+|+.|+++++
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00370 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 4445555444
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=24.95 E-value=71 Score=15.98 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=4.2
Q ss_pred cCCEEeccCC
Q 026356 131 HIIDLNLSGC 140 (240)
Q Consensus 131 ~L~~L~l~~c 140 (240)
+|+.|+++++
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00365 3 NLEELDLSQN 12 (26)
T ss_pred ccCEEECCCC
Confidence 3444444444
Done!