Query 026356
Match_columns 240
No_of_seqs 152 out of 1975
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 11:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.8 1.2E-17 3.9E-22 139.9 15.6 182 26-232 98-282 (336)
2 3ogk_B Coronatine-insensitive 99.7 3.2E-17 1.1E-21 147.1 16.6 196 25-233 297-524 (592)
3 2p1m_B Transport inhibitor res 99.7 4E-17 1.4E-21 146.4 15.5 195 25-234 293-518 (594)
4 2ast_B S-phase kinase-associat 99.7 1E-16 3.4E-21 134.1 15.9 170 46-238 91-263 (336)
5 2p1m_B Transport inhibitor res 99.7 4.5E-17 1.5E-21 146.1 12.9 177 46-234 287-493 (594)
6 3ogk_B Coronatine-insensitive 99.7 2.9E-16 9.8E-21 140.9 13.1 180 45-237 290-502 (592)
7 3e4g_A ATP synthase subunit S, 99.7 4.3E-17 1.5E-21 123.7 6.2 93 79-174 62-157 (176)
8 2ca6_A RAN GTPase-activating p 99.7 1.8E-15 6.1E-20 129.2 17.0 203 24-234 35-286 (386)
9 3e4g_A ATP synthase subunit S, 99.7 6E-17 2.1E-21 122.9 6.3 105 48-159 61-170 (176)
10 2ca6_A RAN GTPase-activating p 99.7 3E-15 1E-19 127.8 17.7 178 46-237 120-318 (386)
11 3un9_A NLR family member X1; l 99.7 6.3E-15 2.2E-19 125.5 18.1 174 23-216 74-260 (372)
12 1z7x_W Ribonuclease inhibitor; 99.7 3.9E-15 1.3E-19 129.6 16.7 151 23-179 87-249 (461)
13 3un9_A NLR family member X1; l 99.6 2.2E-15 7.6E-20 128.3 14.6 173 46-233 70-250 (372)
14 1z7x_W Ribonuclease inhibitor; 99.6 8.6E-15 2.9E-19 127.4 17.8 174 46-233 225-409 (461)
15 3goz_A Leucine-rich repeat-con 99.5 2.2E-14 7.6E-19 121.5 10.1 182 46-233 48-264 (362)
16 3goz_A Leucine-rich repeat-con 99.5 4.7E-14 1.6E-18 119.5 8.9 198 26-233 3-236 (362)
17 1io0_A Tropomodulin; LRR prote 99.5 2.9E-12 9.8E-17 98.5 17.5 125 44-173 32-167 (185)
18 1io0_A Tropomodulin; LRR prote 99.4 1E-11 3.5E-16 95.4 14.1 130 75-216 33-173 (185)
19 1pgv_A TMD-1, tropomodulin TMD 99.2 3.3E-09 1.1E-13 81.7 16.9 127 36-166 30-167 (197)
20 2je0_A Acidic leucine-rich nuc 99.0 5.2E-10 1.8E-14 82.4 6.5 128 23-164 19-148 (149)
21 4ezg_A Putative uncharacterize 99.0 3.5E-11 1.2E-15 93.1 0.1 152 45-233 41-192 (197)
22 2ra8_A Uncharacterized protein 99.0 3E-09 1E-13 90.0 10.8 149 46-216 170-328 (362)
23 4fmz_A Internalin; leucine ric 99.0 5.9E-10 2E-14 93.3 6.4 37 191-233 308-344 (347)
24 1wwl_A Monocyte differentiatio 98.9 2.7E-11 9.3E-16 100.4 -2.9 36 194-235 274-309 (312)
25 4ezg_A Putative uncharacterize 98.9 5.7E-10 2E-14 86.2 4.3 149 24-208 47-195 (197)
26 1ozn_A Reticulon 4 receptor; N 98.9 3.8E-11 1.3E-15 98.0 -3.4 192 25-237 36-240 (285)
27 1h6u_A Internalin H; cell adhe 98.9 1.1E-09 3.7E-14 90.6 5.2 173 26-234 46-229 (308)
28 1pgv_A TMD-1, tropomodulin TMD 98.9 4E-08 1.4E-12 75.7 13.1 130 75-215 38-178 (197)
29 2ra8_A Uncharacterized protein 98.9 6.6E-09 2.2E-13 87.9 9.5 146 22-180 171-330 (362)
30 3v47_A TOLL-like receptor 5B a 98.9 1.3E-10 4.4E-15 100.8 -1.8 63 76-140 101-164 (455)
31 1h6u_A Internalin H; cell adhe 98.8 1.3E-09 4.6E-14 90.0 4.0 158 45-233 38-206 (308)
32 4glp_A Monocyte differentiatio 98.8 6E-11 2.1E-15 98.1 -4.2 63 103-166 168-234 (310)
33 4fmz_A Internalin; leucine ric 98.8 3E-09 1E-13 89.0 6.1 41 190-234 283-323 (347)
34 3rfs_A Internalin B, repeat mo 98.8 1.9E-10 6.5E-15 93.4 -2.4 172 25-233 45-216 (272)
35 1h6t_A Internalin B; cell adhe 98.8 3.4E-09 1.2E-13 86.9 4.7 163 24-233 49-211 (291)
36 4glp_A Monocyte differentiatio 98.8 6.4E-10 2.2E-14 91.9 0.2 177 26-234 122-306 (310)
37 2ell_A Acidic leucine-rich nuc 98.8 2E-09 6.9E-14 80.8 2.8 108 46-166 22-130 (168)
38 1ozn_A Reticulon 4 receptor; N 98.8 8.2E-11 2.8E-15 96.0 -5.4 169 46-232 30-211 (285)
39 3v47_A TOLL-like receptor 5B a 98.8 8E-11 2.8E-15 102.1 -5.9 194 24-232 33-249 (455)
40 2o6q_A Variable lymphocyte rec 98.8 1.1E-10 3.8E-15 94.6 -4.8 176 25-233 41-216 (270)
41 2z80_A TOLL-like receptor 2, v 98.8 6.4E-10 2.2E-14 93.5 -0.4 44 190-237 273-316 (353)
42 4fcg_A Uncharacterized protein 98.8 5.4E-11 1.8E-15 99.4 -7.2 44 190-237 249-292 (328)
43 1m9s_A Internalin B; cell inva 98.7 2.8E-09 9.7E-14 96.0 2.7 164 26-236 48-211 (605)
44 2je0_A Acidic leucine-rich nuc 98.7 3.7E-09 1.3E-13 77.7 2.9 109 46-166 15-123 (149)
45 2ell_A Acidic leucine-rich nuc 98.7 1.9E-09 6.5E-14 81.0 1.2 130 23-166 26-157 (168)
46 3rfs_A Internalin B, repeat mo 98.7 3.8E-09 1.3E-13 85.7 2.2 170 24-235 66-235 (272)
47 1o6v_A Internalin A; bacterial 98.7 1.1E-08 3.8E-13 89.2 5.3 40 190-235 349-388 (466)
48 3o53_A Protein LRIM1, AGAP0063 98.7 9.5E-10 3.2E-14 91.2 -2.3 133 78-236 144-276 (317)
49 2z66_A Variable lymphocyte rec 98.7 6.7E-11 2.3E-15 97.5 -9.7 43 190-236 219-262 (306)
50 2z62_A TOLL-like receptor 4, v 98.7 1.6E-10 5.4E-15 93.9 -7.4 194 24-236 31-238 (276)
51 2id5_A Lingo-1, leucine rich r 98.7 2.1E-10 7.3E-15 100.2 -7.1 132 24-171 35-166 (477)
52 1o6v_A Internalin A; bacterial 98.6 2E-08 6.9E-13 87.5 5.3 176 23-234 179-365 (466)
53 2z80_A TOLL-like receptor 2, v 98.6 5.3E-10 1.8E-14 94.0 -4.8 160 46-233 74-233 (353)
54 3zyj_A Leucine-rich repeat-con 98.6 8.2E-10 2.8E-14 95.7 -4.0 39 191-233 252-290 (440)
55 3t6q_A CD180 antigen; protein- 98.6 4.2E-10 1.4E-14 101.1 -6.4 42 191-237 521-562 (606)
56 2z66_A Variable lymphocyte rec 98.6 8.8E-11 3E-15 96.8 -10.3 189 25-234 32-235 (306)
57 3zyj_A Leucine-rich repeat-con 98.6 6.5E-10 2.2E-14 96.3 -5.4 176 23-232 90-265 (440)
58 3zyi_A Leucine-rich repeat-con 98.6 7.7E-10 2.6E-14 96.2 -5.1 189 23-234 101-302 (452)
59 3zyi_A Leucine-rich repeat-con 98.6 1.2E-09 4.2E-14 94.9 -3.8 186 24-232 78-276 (452)
60 2id5_A Lingo-1, leucine rich r 98.6 1E-09 3.5E-14 95.9 -5.1 128 23-165 58-185 (477)
61 2z81_A CD282 antigen, TOLL-lik 98.6 2.4E-08 8.1E-13 88.5 3.5 182 25-237 314-512 (549)
62 3vq2_A TLR4, TOLL-like recepto 98.6 3.8E-10 1.3E-14 101.4 -8.2 42 190-236 517-559 (606)
63 1wwl_A Monocyte differentiatio 98.6 1E-08 3.5E-13 84.8 1.0 172 23-209 123-311 (312)
64 3t6q_A CD180 antigen; protein- 98.6 2.6E-10 8.9E-15 102.5 -9.8 31 25-58 305-335 (606)
65 2z7x_B TOLL-like receptor 1, v 98.5 1.6E-08 5.6E-13 89.1 1.9 161 46-237 322-483 (520)
66 3m19_A Variable lymphocyte rec 98.5 1.5E-09 5.3E-14 86.9 -4.4 155 25-208 39-193 (251)
67 1h6t_A Internalin B; cell adhe 98.5 2.2E-08 7.4E-13 82.1 2.2 147 45-233 43-189 (291)
68 2z81_A CD282 antigen, TOLL-lik 98.5 1.5E-09 5.2E-14 96.2 -5.1 134 23-170 28-161 (549)
69 1m9s_A Internalin B; cell inva 98.5 7.1E-08 2.4E-12 86.9 5.3 144 24-208 68-211 (605)
70 2z63_A TOLL-like receptor 4, v 98.5 1.3E-10 4.4E-15 103.5 -12.5 91 128-237 443-533 (570)
71 1xeu_A Internalin C; cellular 98.5 1.1E-08 3.6E-13 82.7 -0.6 145 46-233 39-183 (263)
72 4fcg_A Uncharacterized protein 98.5 1.1E-09 3.9E-14 91.3 -6.8 176 25-237 85-268 (328)
73 3vq2_A TLR4, TOLL-like recepto 98.5 8.3E-10 2.9E-14 99.2 -8.3 87 128-233 446-532 (606)
74 3o53_A Protein LRIM1, AGAP0063 98.5 1.3E-08 4.3E-13 84.4 -0.7 124 77-233 79-202 (317)
75 3o6n_A APL1; leucine-rich repe 98.5 9.7E-10 3.3E-14 93.6 -7.8 109 46-166 67-175 (390)
76 3rgz_A Protein brassinosteroid 98.5 1.7E-09 5.7E-14 100.2 -7.0 133 23-170 102-236 (768)
77 3oja_A Leucine-rich immune mol 98.5 2.3E-09 8E-14 94.2 -5.8 128 24-166 37-179 (487)
78 1xku_A Decorin; proteoglycan, 98.5 1.9E-08 6.5E-13 83.6 -0.2 100 25-140 56-155 (330)
79 3rgz_A Protein brassinosteroid 98.4 3.7E-09 1.3E-13 97.9 -5.2 109 103-235 150-260 (768)
80 1ziw_A TOLL-like receptor 3; i 98.4 5.1E-09 1.8E-13 95.3 -4.4 127 25-166 29-155 (680)
81 2o6q_A Variable lymphocyte rec 98.4 4.6E-09 1.6E-13 85.0 -4.5 174 24-233 19-192 (270)
82 2xwt_C Thyrotropin receptor; s 98.4 1.1E-09 3.8E-14 87.0 -8.1 188 25-234 35-238 (239)
83 3oja_B Anopheles plasmodium-re 98.4 1.8E-09 6.1E-14 97.2 -8.0 85 46-140 73-157 (597)
84 3oja_B Anopheles plasmodium-re 98.4 7E-09 2.4E-13 93.3 -4.1 16 193-208 300-315 (597)
85 1xku_A Decorin; proteoglycan, 98.4 1E-08 3.4E-13 85.3 -3.0 127 24-166 124-250 (330)
86 3bz5_A Internalin-J, INLJ; leu 98.4 1.1E-07 3.7E-12 82.9 3.2 169 24-233 45-223 (457)
87 3m19_A Variable lymphocyte rec 98.4 1.4E-08 4.8E-13 81.3 -2.3 157 48-234 35-191 (251)
88 2o6s_A Variable lymphocyte rec 98.4 2.9E-08 9.8E-13 77.1 -0.5 36 128-165 98-133 (208)
89 1a9n_A U2A', U2A'; complex (nu 98.4 5.7E-08 1.9E-12 73.4 0.9 139 45-209 16-155 (176)
90 1ogq_A PGIP-2, polygalacturona 98.4 2.5E-10 8.4E-15 94.7 -13.4 187 26-234 55-256 (313)
91 3oja_A Leucine-rich immune mol 98.4 1.8E-08 6.1E-13 88.6 -2.3 127 78-230 144-270 (487)
92 2z7x_B TOLL-like receptor 1, v 98.4 1.5E-07 5.1E-12 82.9 3.4 161 24-215 327-489 (520)
93 1p9a_G Platelet glycoprotein I 98.3 3.8E-09 1.3E-13 86.6 -7.2 152 24-207 34-185 (290)
94 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 4.6E-08 1.6E-12 87.2 -0.8 160 46-237 351-512 (562)
95 1ogq_A PGIP-2, polygalacturona 98.3 8.5E-10 2.9E-14 91.4 -11.5 190 24-236 79-282 (313)
96 1ziw_A TOLL-like receptor 3; i 98.3 1.5E-08 5.3E-13 92.1 -4.4 45 190-237 580-624 (680)
97 3bz5_A Internalin-J, INLJ; leu 98.3 8.6E-08 2.9E-12 83.5 0.5 169 23-233 66-244 (457)
98 4ecn_A Leucine-rich repeat pro 98.3 1.7E-07 5.8E-12 87.7 2.0 86 76-166 489-583 (876)
99 1xeu_A Internalin C; cellular 98.3 1.9E-07 6.4E-12 75.4 1.5 142 24-207 44-185 (263)
100 2ft3_A Biglycan; proteoglycan, 98.3 1.2E-08 4E-13 85.0 -5.8 116 103-233 216-331 (332)
101 4ecn_A Leucine-rich repeat pro 98.2 8.7E-08 3E-12 89.7 -1.3 133 23-170 493-632 (876)
102 1p9a_G Platelet glycoprotein I 98.2 2.4E-08 8.2E-13 81.8 -4.6 153 47-232 30-182 (290)
103 3o6n_A APL1; leucine-rich repe 98.2 5.4E-08 1.8E-12 82.7 -2.7 138 46-209 43-180 (390)
104 4eco_A Uncharacterized protein 98.2 1.2E-07 4.2E-12 85.9 -0.7 177 44-235 202-415 (636)
105 1a9n_A U2A', U2A'; complex (nu 98.2 9.5E-07 3.2E-11 66.6 3.8 128 23-166 21-150 (176)
106 2ft3_A Biglycan; proteoglycan, 98.2 5.6E-09 1.9E-13 87.0 -9.9 39 191-233 214-252 (332)
107 2o6s_A Variable lymphocyte rec 98.2 5.8E-08 2E-12 75.3 -3.5 132 78-233 28-159 (208)
108 2z62_A TOLL-like receptor 4, v 98.2 3.4E-08 1.2E-12 80.0 -5.0 137 48-209 28-164 (276)
109 2xwt_C Thyrotropin receptor; s 98.2 4.8E-09 1.7E-13 83.3 -10.1 112 48-171 31-145 (239)
110 3j0a_A TOLL-like receptor 5; m 98.1 6.1E-09 2.1E-13 97.3 -11.2 133 25-170 28-161 (844)
111 4g8a_A TOLL-like receptor 4; l 98.1 9E-08 3.1E-12 85.8 -3.8 131 25-170 56-186 (635)
112 2xot_A Amphoterin-induced prot 98.1 5E-08 1.7E-12 82.3 -5.3 113 46-170 62-176 (361)
113 2z63_A TOLL-like receptor 4, v 98.1 3.4E-08 1.2E-12 87.8 -7.3 114 76-208 419-532 (570)
114 4g8a_A TOLL-like receptor 4; l 98.1 8.9E-08 3E-12 85.9 -4.6 136 49-209 53-188 (635)
115 2v9t_B SLIT homolog 2 protein 98.1 1.8E-07 6.2E-12 73.4 -2.7 36 128-165 126-161 (220)
116 3e6j_A Variable lymphocyte rec 98.0 3.8E-07 1.3E-11 72.0 -1.1 134 47-207 39-172 (229)
117 4eco_A Uncharacterized protein 98.0 8.4E-08 2.9E-12 87.0 -5.6 36 191-233 563-598 (636)
118 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 5.1E-07 1.8E-11 80.4 -0.6 162 24-215 356-518 (562)
119 3e6j_A Variable lymphocyte rec 98.0 2.9E-07 9.8E-12 72.7 -2.1 126 25-166 44-169 (229)
120 2v9t_B SLIT homolog 2 protein 98.0 1.5E-07 5.1E-12 73.9 -4.0 134 48-207 32-165 (220)
121 2v70_A SLIT-2, SLIT homolog 2 98.0 1.5E-07 5.3E-12 73.8 -3.9 12 46-57 55-66 (220)
122 1ds9_A Outer arm dynein; leuci 98.0 3.4E-07 1.2E-11 70.4 -1.9 105 45-166 45-150 (198)
123 2v70_A SLIT-2, SLIT homolog 2 98.0 1.2E-07 4E-12 74.5 -4.6 154 24-208 14-167 (220)
124 1ds9_A Outer arm dynein; leuci 97.9 4.8E-07 1.7E-11 69.6 -2.1 123 24-164 51-182 (198)
125 2xot_A Amphoterin-induced prot 97.9 2.8E-07 9.7E-12 77.7 -5.3 178 24-233 21-200 (361)
126 3g06_A SSPH2 (leucine-rich rep 97.9 6.3E-06 2.1E-10 74.5 3.1 47 25-88 65-111 (622)
127 3j0a_A TOLL-like receptor 5; m 97.7 5.5E-07 1.9E-11 84.2 -5.9 111 23-144 50-161 (844)
128 1dce_A Protein (RAB geranylger 97.7 4.5E-06 1.5E-10 74.6 0.3 105 48-170 441-546 (567)
129 1w8a_A SLIT protein; signaling 97.7 3.7E-07 1.3E-11 70.0 -6.7 126 24-166 11-136 (192)
130 3g06_A SSPH2 (leucine-rich rep 97.7 1.5E-05 5E-10 72.0 2.7 37 193-234 260-296 (622)
131 3cvr_A Invasion plasmid antige 97.6 2.5E-06 8.6E-11 76.3 -3.3 33 197-234 210-242 (571)
132 2wfh_A SLIT homolog 2 protein 97.6 3.5E-06 1.2E-10 64.6 -2.8 116 47-175 30-145 (193)
133 1dce_A Protein (RAB geranylger 97.5 2.1E-05 7.3E-10 70.2 1.8 106 79-208 442-547 (567)
134 2o6r_A Variable lymphocyte rec 97.5 4.9E-06 1.7E-10 62.6 -2.2 109 46-166 26-134 (177)
135 1jl5_A Outer protein YOPM; leu 97.5 1.6E-05 5.5E-10 69.1 0.5 12 103-114 236-247 (454)
136 2wfh_A SLIT homolog 2 protein 97.4 9.5E-06 3.2E-10 62.2 -2.1 109 78-207 31-139 (193)
137 1w8a_A SLIT protein; signaling 97.4 3.1E-06 1.1E-10 64.7 -4.9 132 50-209 10-141 (192)
138 1jl5_A Outer protein YOPM; leu 97.4 7.1E-05 2.4E-09 65.0 2.8 13 222-234 396-408 (454)
139 2o6r_A Variable lymphocyte rec 97.3 2.2E-05 7.5E-10 59.0 -0.7 132 49-209 8-139 (177)
140 4b8c_D Glucose-repressible alc 97.3 2.7E-05 9.3E-10 71.6 -0.6 82 76-166 222-303 (727)
141 3cvr_A Invasion plasmid antige 97.2 9.1E-05 3.1E-09 66.2 1.7 154 25-233 63-218 (571)
142 3rw6_A Nuclear RNA export fact 97.2 0.00056 1.9E-08 55.1 5.9 62 101-166 167-230 (267)
143 4b8c_D Glucose-repressible alc 97.0 5E-05 1.7E-09 69.9 -1.9 111 45-172 221-331 (727)
144 3rw6_A Nuclear RNA export fact 96.7 0.0014 4.7E-08 52.8 4.4 84 77-165 169-260 (267)
145 4ay9_X Follicle-stimulating ho 96.6 6.4E-06 2.2E-10 69.0 -10.2 32 25-59 34-65 (350)
146 3g39_A Variable lymphocyte rec 96.6 0.00014 4.6E-09 54.4 -2.0 83 78-166 30-112 (170)
147 2r9u_A Variable lymphocyte rec 96.5 0.00016 5.5E-09 54.2 -2.3 60 103-166 56-115 (174)
148 3g39_A Variable lymphocyte rec 96.5 0.00019 6.6E-09 53.5 -2.1 102 24-141 12-113 (170)
149 2r9u_A Variable lymphocyte rec 96.2 0.00062 2.1E-08 51.0 -0.7 102 24-141 15-116 (174)
150 3sb4_A Hypothetical leucine ri 96.1 0.0004 1.4E-08 57.4 -2.4 36 189-228 292-327 (329)
151 3sb4_A Hypothetical leucine ri 95.3 0.0016 5.4E-08 53.8 -1.6 102 48-165 202-306 (329)
152 2ifg_A High affinity nerve gro 95.2 0.0015 5E-08 54.2 -2.2 63 45-114 28-90 (347)
153 4ay9_X Follicle-stimulating ho 95.1 0.00016 5.3E-09 60.4 -8.4 59 23-88 56-114 (350)
154 2ifg_A High affinity nerve gro 94.8 0.0038 1.3E-07 51.6 -0.8 85 76-166 29-113 (347)
155 4fdw_A Leucine rich hypothetic 91.0 0.00075 2.6E-08 57.6 -10.9 12 154-165 269-280 (401)
156 4gt6_A Cell surface protein; l 77.2 0.34 1.2E-05 40.6 -1.0 78 76-165 286-366 (394)
157 4fdw_A Leucine rich hypothetic 67.0 0.2 6.7E-06 42.5 -4.8 101 48-166 248-355 (401)
158 4gt6_A Cell surface protein; l 66.4 1.6 5.5E-05 36.4 0.8 100 46-165 286-387 (394)
159 4h09_A Hypothetical leucine ri 64.0 0.23 8E-06 41.3 -4.9 32 128-164 284-318 (379)
160 3rfe_A Platelet glycoprotein I 50.7 4.1 0.00014 28.3 0.5 12 130-141 55-66 (130)
161 4fs7_A Uncharacterized protein 22.1 7.1 0.00024 32.4 -2.6 81 45-140 294-376 (394)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=1.2e-17 Score=139.89 Aligned_cols=182 Identities=19% Similarity=0.295 Sum_probs=122.5
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 105 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 105 (240)
|++++|. +....+.... ..+++|++|++++| .+++.....++. +++|++|++++|..+++.++..+...+++
T Consensus 98 L~L~~~~-l~~~~~~~~~-~~~~~L~~L~L~~~-~l~~~~~~~l~~-----~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 98 MDLSNSV-IEVSTLHGIL-SQCSKLQNLSLEGL-RLSDPIVNTLAK-----NSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp EECTTCE-ECHHHHHHHH-TTBCCCSEEECTTC-BCCHHHHHHHTT-----CTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred EEccCCC-cCHHHHHHHH-hhCCCCCEEeCcCc-ccCHHHHHHHhc-----CCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 7777776 4544444433 46778888888875 477666665533 47788888888767777777666666788
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCC-cCCEEeccCCC-CCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 106 LKVFSIYWNVRVTDIGIQHLVKNCK-HIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 106 L~~L~l~~~~~l~~~~~~~l~~~~~-~L~~L~l~~c~-~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
|++|++++|..+++.++..+...++ +|++|++++|. .+++..+..+..++++|+.|++++|..+++.++..
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~------- 242 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE------- 242 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-------
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-------
Confidence 8888888776777777777777777 88888888875 57777776666677888888888775466644332
Q ss_pred hhhHHHhcCCccceeecccCCC-CCchhHHHHHHHhhcccccchhhhhhh
Q 026356 184 LMSEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETNTYKHGKEKHIIET 232 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c 232 (240)
+..++.|+.++++.+. +.+. ++.. + ..+++|+.|++.+|
T Consensus 243 ------l~~l~~L~~L~l~~~~~~~~~-~~~~-l--~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 243 ------FFQLNYLQHLSLSRCYDIIPE-TLLE-L--GEIPTLKTLQVFGI 282 (336)
T ss_dssp ------GGGCTTCCEEECTTCTTCCGG-GGGG-G--GGCTTCCEEECTTS
T ss_pred ------HhCCCCCCEeeCCCCCCCCHH-HHHH-H--hcCCCCCEEeccCc
Confidence 2345667777776663 3333 2211 2 45778888888777
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=3.2e-17 Score=147.10 Aligned_cols=196 Identities=17% Similarity=0.219 Sum_probs=149.0
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCC----------CCCCcHH
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG----------CQKISDK 94 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~----------c~~l~~~ 94 (240)
.|++++|. +++..+..+. ..+++|++|+++ +.+.+.++..++..+ ++|++|++++ |+.+++.
T Consensus 297 ~L~Ls~~~-l~~~~~~~~~-~~~~~L~~L~L~--~~~~~~~l~~~~~~~----~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 297 KLDLLYAL-LETEDHCTLI-QKCPNLEVLETR--NVIGDRGLEVLAQYC----KQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp EEEETTCC-CCHHHHHHHH-TTCTTCCEEEEE--GGGHHHHHHHHHHHC----TTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred EEecCCCc-CCHHHHHHHH-HhCcCCCEEecc--CccCHHHHHHHHHhC----CCCCEEEeecCccccccccccCccCHH
Confidence 38999888 7766665543 478888888888 457888888887776 7889999884 7888888
Q ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEecc---CCCCCCH----HHHHHHHHhCCCCcEEeccCCC
Q 026356 95 GIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLS---GCKNLLD----KSLQLIADNYQELESLNLTRYV 167 (240)
Q Consensus 95 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~---~c~~ltd----~~l~~l~~~~~~L~~L~l~~c~ 167 (240)
++..++..|++|++|+++ |..+++.++..++..+++|++|+++ .|..+++ .++..+..++++|+.|++++|.
T Consensus 369 ~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 888888888889988885 5578888888888888888888887 3557775 4677777778888888887765
Q ss_pred C-CCHHHHHHHHHhChhhhhH--------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356 168 N-MILLGLFYIWSNNILLMSE--------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET 232 (240)
Q Consensus 168 ~-it~~~~~~l~~~~~~~l~~--------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 232 (240)
+ +++.++..+...++. ++. -...+|+.|+.++++.+.+.+. ++..+. ..+++|+.|++++|
T Consensus 448 ~~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~--~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPN-VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER-AIAAAV--TKLPSLRYLWVQGY 523 (592)
T ss_dssp GGCCHHHHHHHHHSCTT-CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH-HHHHHH--HHCSSCCEEEEESC
T ss_pred CCccHHHHHHHHHhCcc-ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH-HHHHHH--HhcCccCeeECcCC
Confidence 3 788888777765433 211 1346778888888888887555 555565 67889999999888
Q ss_pred h
Q 026356 233 I 233 (240)
Q Consensus 233 ~ 233 (240)
.
T Consensus 524 ~ 524 (592)
T 3ogk_B 524 R 524 (592)
T ss_dssp B
T ss_pred c
Confidence 7
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=4e-17 Score=146.44 Aligned_cols=195 Identities=17% Similarity=0.254 Sum_probs=147.5
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEec--------CCCCCCcHHHH
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL--------NGCQKISDKGI 96 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l--------~~c~~l~~~~~ 96 (240)
.|++++|. +++..+..+. ..+++|++|++++| +++.++..++..+ ++|++|++ .+|..+++.++
T Consensus 293 ~L~L~~~~-l~~~~l~~~~-~~~~~L~~L~l~~~--~~~~~l~~l~~~~----~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 293 TLNLSYAT-VQSYDLVKLL-CQCPKLQRLWVLDY--IEDAGLEVLASTC----KDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp EEECTTCC-CCHHHHHHHH-TTCTTCCEEEEEGG--GHHHHHHHHHHHC----TTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred EEEccCCC-CCHHHHHHHH-hcCCCcCEEeCcCc--cCHHHHHHHHHhC----CCCCEEEEecCcccccccCCCCCHHHH
Confidence 49999998 7777666554 47888999999885 7788888887766 88899988 45578888888
Q ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEecc-----CCCCCC----HHHHHHHHHhCCCCcEEeccCCC
Q 026356 97 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLS-----GCKNLL----DKSLQLIADNYQELESLNLTRYV 167 (240)
Q Consensus 97 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~-----~c~~lt----d~~l~~l~~~~~~L~~L~l~~c~ 167 (240)
..++..|++|++|.++ |..+++.++..++..+++|+.|+++ +|..++ +.++..+..++++|+.|++++
T Consensus 365 ~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-- 441 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-- 441 (594)
T ss_dssp HHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--
T ss_pred HHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--
Confidence 8888788888888665 5578888888888888888888888 667888 777777777788888888866
Q ss_pred CCCHHHHHHHHHhChhhhhHH--------------HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 168 NMILLGLFYIWSNNILLMSEF--------------IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 168 ~it~~~~~~l~~~~~~~l~~l--------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+++.++..+...++. ++.+ ...+++.|+.++++.+.+.+. +...+. ..+++|+.|++++|+
T Consensus 442 ~l~~~~~~~l~~~~~~-L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~-~~~~~~--~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKK-MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-ALLANA--SKLETMRSLWMSSCS 517 (594)
T ss_dssp SCCHHHHHHHHHHCTT-CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH-HHHHTG--GGGGGSSEEEEESSC
T ss_pred cccHHHHHHHHHhchh-ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH-HHHHHH--HhCCCCCEEeeeCCC
Confidence 6888888777664332 2211 124577888888888888544 444444 678889999988887
Q ss_pred h
Q 026356 234 K 234 (240)
Q Consensus 234 ~ 234 (240)
.
T Consensus 518 ~ 518 (594)
T 2p1m_B 518 V 518 (594)
T ss_dssp C
T ss_pred C
Confidence 5
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=1e-16 Score=134.14 Aligned_cols=170 Identities=18% Similarity=0.261 Sum_probs=140.6
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
.+++|++|++++| .+++.++..+...+ ++|++|++++| .+++.....++. +++|++|++++|..+++.++..+
T Consensus 91 ~~~~L~~L~L~~~-~l~~~~~~~~~~~~----~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 91 SPFRVQHMDLSNS-VIEVSTLHGILSQC----SKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp CCBCCCEEECTTC-EECHHHHHHHHTTB----CCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHH
T ss_pred cCCCCCEEEccCC-CcCHHHHHHHHhhC----CCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHH
Confidence 4688999999995 58888777776555 99999999997 799888888876 99999999999988999999998
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCC-CCcEEeccCCC-CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRYV-NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS 203 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~-~L~~L~l~~c~-~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~ 203 (240)
...+++|++|++++|..+++.++..+...++ +|+.|++++|. .+++.++.... .+++.|+.++++.
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~------------~~~~~L~~L~l~~ 231 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV------------RRCPNLVHLDLSD 231 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH------------HHCTTCSEEECTT
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH------------hhCCCCCEEeCCC
Confidence 8999999999999998899988888777899 99999999986 68887665543 3367788999988
Q ss_pred CC-CCchhHHHHHHHhhcccccchhhhhhhhhhhcc
Q 026356 204 SN-GGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQ 238 (240)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d~ 238 (240)
+. +.+. .... + ..+++|+.|++.+|..+.+.
T Consensus 232 ~~~l~~~-~~~~-l--~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 232 SVMLKND-CFQE-F--FQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp CTTCCGG-GGGG-G--GGCTTCCEEECTTCTTCCGG
T ss_pred CCcCCHH-HHHH-H--hCCCCCCEeeCCCCCCCCHH
Confidence 87 5544 3332 2 57799999999999866654
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=4.5e-17 Score=146.05 Aligned_cols=177 Identities=17% Similarity=0.250 Sum_probs=150.2
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEe--------cCCCCC
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSI--------YWNVRV 117 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l--------~~~~~l 117 (240)
.+++|++|++++|. +++.++..+...+ ++|++|++++| +++.++..++..|++|++|++ .++..+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~----~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQC----PKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTC----TTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcC----CCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 67899999999976 9998888776655 99999999997 888999999989999999999 346689
Q ss_pred CHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEecc-----CCCCCC----HHHHHHHHHhChhhhhHH
Q 026356 118 TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT-----RYVNMI----LLGLFYIWSNNILLMSEF 188 (240)
Q Consensus 118 ~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~-----~c~~it----~~~~~~l~~~~~~~l~~l 188 (240)
++.++..++..+++|++|.++.+ .+++.++..++.++++|+.|+++ +|..++ +.++..+..+++. ++.+
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-L~~L 437 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD-LRRL 437 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT-CCEE
T ss_pred CHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC-ccEE
Confidence 99999999999999999977655 89999999999889999999999 788999 8898888777664 4444
Q ss_pred Hhc-------------CCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 189 IYH-------------GIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 189 ~~~-------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
.+. .++.|+.++++++.+.+. ++..+. ..+++|++|++++|+.
T Consensus 438 ~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~--~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 438 SLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL-GMHHVL--SGCDSLRKLEIRDCPF 493 (594)
T ss_dssp ECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHH-HHHHHH--HHCTTCCEEEEESCSC
T ss_pred eecCcccHHHHHHHHHhchhccEeeccCCCCcHH-HHHHHH--hcCCCcCEEECcCCCC
Confidence 332 377899999999988776 566665 6799999999999986
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=2.9e-16 Score=140.86 Aligned_cols=180 Identities=17% Similarity=0.255 Sum_probs=150.9
Q ss_pred hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecC----------C
Q 026356 45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYW----------N 114 (240)
Q Consensus 45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~----------~ 114 (240)
..+++|++|++++|. +++.++..+...+ ++|++|+++. .+++.++..++..|++|++|++++ |
T Consensus 290 ~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~----~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-LETEDHCTLIQKC----PNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp GGGGGCCEEEETTCC-CCHHHHHHHHTTC----TTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred hhcCCCcEEecCCCc-CCHHHHHHHHHhC----cCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 478899999999976 9998887665544 9999999994 689999999999999999999995 7
Q ss_pred CCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC---CCCCCH----HHHHHHHHhChhhhhH
Q 026356 115 VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR---YVNMIL----LGLFYIWSNNILLMSE 187 (240)
Q Consensus 115 ~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~---c~~it~----~~~~~l~~~~~~~l~~ 187 (240)
..+++.++..++..|++|++|+++.+ .+++.++..++.++++|+.|++++ |+.+++ .|+..+..+++. ++.
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~-L~~ 440 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK-LRR 440 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT-CCE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC-CCE
Confidence 89999999999999999999999554 999999999998899999999983 668886 578877776554 433
Q ss_pred HHh----------------cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 188 FIY----------------HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 188 l~~----------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
+.+ ..++.|+.++++++.+.+. ++..+. ..+++|++|++++|+ ++|
T Consensus 441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~--~~~~~L~~L~l~~n~-l~~ 502 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-GLMEFS--RGCPNLQKLEMRGCC-FSE 502 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH-HHHHHH--TCCTTCCEEEEESCC-CBH
T ss_pred EEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH-HHHHHH--hcCcccCeeeccCCC-CcH
Confidence 332 3478899999999988876 667777 789999999999998 443
No 7
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.67 E-value=4.3e-17 Score=123.68 Aligned_cols=93 Identities=13% Similarity=0.231 Sum_probs=60.2
Q ss_pred CccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc---CCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356 79 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN---CKHIIDLNLSGCKNLLDKSLQLIADNY 155 (240)
Q Consensus 79 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~c~~ltd~~l~~l~~~~ 155 (240)
+|++|++++| .+++.++.++. .|++|++|++++|..+||.++..++.. +++|++|++++|..|||.++..++ ++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCC-CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 4666666666 36666666663 466666666666666666666666642 456666666666666666666665 36
Q ss_pred CCCcEEeccCCCCCCHHHH
Q 026356 156 QELESLNLTRYVNMILLGL 174 (240)
Q Consensus 156 ~~L~~L~l~~c~~it~~~~ 174 (240)
++|++|++++|+.+||.|+
T Consensus 139 ~~L~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEK 157 (176)
T ss_dssp TTCCEEEEESCTTCCCHHH
T ss_pred CCCCEEECCCCCCCCchHH
Confidence 6666666666666666654
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=1.8e-15 Score=129.18 Aligned_cols=203 Identities=11% Similarity=0.048 Sum_probs=108.6
Q ss_pred eEEeccCCCCCChHHHHHhh--hhcCCCCceEeccCC--CCCc---HHHHHHHHHHccCCCCCccEEecCCCCCCcHHHH
Q 026356 24 KVIDLREMNNAGNRLVAALS--IPRYRHVREINLEFA--QDIE---DRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI 96 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~--~~~~~~L~~L~l~~c--~~i~---~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~ 96 (240)
+.|+|++|. ++.....+++ +..+++|++|++++| +.+. ..++..++..+ ..+++|++|+++++ .+++.+.
T Consensus 35 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l-~~~~~L~~L~Ls~n-~l~~~~~ 111 (386)
T 2ca6_A 35 KEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL-LKCPKLHTVRLSDN-AFGPTAQ 111 (386)
T ss_dssp CEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH-TTCTTCCEEECCSC-CCCTTTH
T ss_pred cEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH-hhCCcccEEECCCC-cCCHHHH
Confidence 347777664 4444444432 335666777777664 2222 23555555443 44566666666664 5555433
Q ss_pred HHHH---hcCCCCCEEEecCCCCCCHHHHHHHHHcC------------CcCCEEeccCCCCCCHHHHHHHHH---hCCCC
Q 026356 97 EIIS---STCPELKVFSIYWNVRVTDIGIQHLVKNC------------KHIIDLNLSGCKNLLDKSLQLIAD---NYQEL 158 (240)
Q Consensus 97 ~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~------------~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L 158 (240)
..++ ..+++|++|++++| .+++.+...++..+ ++|++|++++| .+++.++..++. .+++|
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCc
Confidence 3222 24666666666665 45555444443322 56666666666 565554443332 45666
Q ss_pred cEEeccCCCCCCHHHHHHHHHh----ChhhhhH---------------H--HhcCCccceeecccCCCCCchhHHHHHHH
Q 026356 159 ESLNLTRYVNMILLGLFYIWSN----NILLMSE---------------F--IYHGIRFFQAVQINSSNGGDHLAFAYIIE 217 (240)
Q Consensus 159 ~~L~l~~c~~it~~~~~~l~~~----~~~~l~~---------------l--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 217 (240)
+.|++++| .+++.|+..+... ++. ++. + .+..++.|+.++++.+.+.+. +...+..
T Consensus 190 ~~L~L~~n-~l~~~g~~~l~~~~l~~~~~-L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~ 266 (386)
T 2ca6_A 190 HTVKMVQN-GIRPEGIEHLLLEGLAYCQE-LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-GAAAVVD 266 (386)
T ss_dssp CEEECCSS-CCCHHHHHHHHHTTGGGCTT-CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH-HHHHHHH
T ss_pred CEEECcCC-CCCHhHHHHHHHHHhhcCCC-ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh-hHHHHHH
Confidence 66666664 5666665554431 110 100 0 234566777888877777665 2222221
Q ss_pred h---hcccccchhhhhhhhh
Q 026356 218 T---NTYKHGKEKHIIETIK 234 (240)
Q Consensus 218 ~---~~~~~L~~L~l~~c~~ 234 (240)
. ..+++|+.|++++|.-
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCC
T ss_pred HHhhccCCCeEEEECcCCcC
Confidence 1 2377888888877653
No 9
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.67 E-value=6e-17 Score=122.88 Aligned_cols=105 Identities=24% Similarity=0.255 Sum_probs=92.3
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc---CCCCCEEEecCCCCCCHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
..|++|++++|. |++.++..+. .+++|++|++++|..+||.++..++.. |++|++|++++|+++||.|+..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 469999999986 9999998863 349999999999999999999999973 6789999999999999999999
Q ss_pred HHHcCCcCCEEeccCCCCCCHHHH--HHHHHhCCCCc
Q 026356 125 LVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELE 159 (240)
Q Consensus 125 l~~~~~~L~~L~l~~c~~ltd~~l--~~l~~~~~~L~ 159 (240)
+. .+++|++|++++|+.|||.++ ..+.++.|+++
T Consensus 135 L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 135 LH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp GG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred Hh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 87 689999999999999999774 44666788876
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=3e-15 Score=127.77 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=99.9
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCC---------CCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecC
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSL---------QDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYW 113 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~---------~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~ 113 (240)
.+++|++|++++| .+++.+...++..+ ..+ ++|++|++++| .+++.++..++. .+++|++|++++
T Consensus 120 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l-~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 120 KHTPLEHLYLHNN-GLGPQAGAKIARAL-QELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HCTTCCEEECCSS-CCHHHHHHHHHHHH-HHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred hCCCCCEEECcCC-CCCHHHHHHHHHHH-HHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence 4555555555552 35554444444322 112 45666666653 555444443222 455666666665
Q ss_pred CCCCCHHHHHHHHH----cCCcCCEEeccCCCCCCHHHHHHHH---HhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhh
Q 026356 114 NVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNMILLGLFYIWSNNILLMS 186 (240)
Q Consensus 114 ~~~l~~~~~~~l~~----~~~~L~~L~l~~c~~ltd~~l~~l~---~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~ 186 (240)
| .+++.++..++. .+++|+.|++++| .+++.+...+. ..+++|+.|++++| .+++.|...++..
T Consensus 197 n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~------ 267 (386)
T 2ca6_A 197 N-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDA------ 267 (386)
T ss_dssp S-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHH------
T ss_pred C-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHHHH------
Confidence 5 566555544443 4556666666666 46555444433 23556666666664 4666555544332
Q ss_pred HHHhcCCccceeecccCCCCCchhHHHHHHHh--hcccccchhhhhhhhhhhc
Q 026356 187 EFIYHGIRFFQAVQINSSNGGDHLAFAYIIET--NTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 187 ~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~d 237 (240)
+....++.|+.++++++.+.+. ++..+... ..+++|+.|++.+|+-.++
T Consensus 268 -l~~~~~~~L~~L~L~~n~i~~~-g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 268 -FSKLENIGLQTLRLQYNEIELD-AVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp -HHTCSSCCCCEEECCSSCCBHH-HHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred -HhhccCCCeEEEECcCCcCCHH-HHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 1113478899999999999885 33333221 4579999999998875443
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.66 E-value=6.3e-15 Score=125.50 Aligned_cols=174 Identities=13% Similarity=0.118 Sum_probs=122.6
Q ss_pred CeEEeccCCCCCChHHHHHhhh---hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHH
Q 026356 23 PKVIDLREMNNAGNRLVAALSI---PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 99 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~---~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 99 (240)
.+.|++++|. ++......+.. ...++|++|++++ +.+++.++..++..+ ++|++|++++| .+++.+...+
T Consensus 74 L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L----~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 74 LRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVF----LRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp CCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHH----HTEEEEECCSS-CCCHHHHHHH
T ss_pred CCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHH----HhccHhhcCCC-CCCHHHHHHH
Confidence 3458888877 55554444431 1336788888888 468888888777766 67888888885 8888777776
Q ss_pred Hh----cCCCCCEEEecCCCCCCHHHHHHHH---HcCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCC
Q 026356 100 SS----TCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNM 169 (240)
Q Consensus 100 ~~----~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~i 169 (240)
+. .+++|++|++++| .+++.++..++ ..+++|++|++++| .+++.++..++. .+++|+.|++++| .+
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i 223 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GA 223 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CC
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CC
Confidence 54 3577888888877 68877776664 45678888888888 688877766654 3567888888885 78
Q ss_pred CHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHH
Q 026356 170 ILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII 216 (240)
Q Consensus 170 t~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 216 (240)
++.|...++.. +..++.|+.++++++.+.+. +...+.
T Consensus 224 ~~~g~~~l~~~---------L~~~~~L~~L~Ls~N~i~~~-g~~~L~ 260 (372)
T 3un9_A 224 GDTAALALARA---------AREHPSLELLHLYFNELSSE-GRQVLR 260 (372)
T ss_dssp CHHHHHHHHHH---------HHHCSSCCEEECTTSSCCHH-HHHHHH
T ss_pred CHHHHHHHHHH---------HHhCCCCCEEeccCCCCCHH-HHHHHH
Confidence 88877766543 23356677888888888776 455554
No 12
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=3.9e-15 Score=129.57 Aligned_cols=151 Identities=19% Similarity=0.280 Sum_probs=92.9
Q ss_pred CeEEeccCCCCCChHHHHHh--hhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHH
Q 026356 23 PKVIDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS 100 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l--~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 100 (240)
.+.|++++|. +++.++..+ .+..+++|++|++++ +.+++.+...++..+....++|++|++++| .+++.+...++
T Consensus 87 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~ 163 (461)
T 1z7x_W 87 IQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLA 163 (461)
T ss_dssp CCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHH
T ss_pred eeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHH
Confidence 3347777665 333221111 123667777777777 347777777776655444556777777775 66665544333
Q ss_pred h---cCCCCCEEEecCCCCCCHHHHHHHHHc----CCcCCEEeccCCCCCCHHHHHHHH---HhCCCCcEEeccCCCCCC
Q 026356 101 S---TCPELKVFSIYWNVRVTDIGIQHLVKN----CKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNMI 170 (240)
Q Consensus 101 ~---~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~c~~ltd~~l~~l~---~~~~~L~~L~l~~c~~it 170 (240)
. .+++|++|+++++ .+++.++..+... .++|++|++++| .+++.++..+. ..+++|++|++++| .++
T Consensus 164 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 240 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLG 240 (461)
T ss_dssp HHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCH
T ss_pred HHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCC
Confidence 2 4677777777776 4777766666543 347777777777 67765544333 24677777777775 677
Q ss_pred HHHHHHHHH
Q 026356 171 LLGLFYIWS 179 (240)
Q Consensus 171 ~~~~~~l~~ 179 (240)
+.++..++.
T Consensus 241 ~~~~~~l~~ 249 (461)
T 1z7x_W 241 DVGMAELCP 249 (461)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 777666554
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.65 E-value=2.2e-15 Score=128.30 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=144.4
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
..++|+.|++++| .+++.+...++.......++|+.|++++| .+++.++..++..+++|++|++++| .+++.++..+
T Consensus 70 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 70 VLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 4578999999994 69999999998876555579999999996 8999999999888889999999998 8999998888
Q ss_pred HHc----CCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCcccee
Q 026356 126 VKN----CKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQA 198 (240)
Q Consensus 126 ~~~----~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~ 198 (240)
+.. .++|++|++++| .+++.++..++. .+++|++|++++| .+++.|+..++.. +..++.|+.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~---------L~~~~~L~~ 215 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQ---------LDRNRQLQE 215 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHH---------GGGCSCCCE
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHH---------HhcCCCcCe
Confidence 653 578999999999 899988887764 5789999999995 7999998877653 244567999
Q ss_pred ecccCCCCCchhHHHHHHH-hhcccccchhhhhhhh
Q 026356 199 VQINSSNGGDHLAFAYIIE-TNTYKHGKEKHIIETI 233 (240)
Q Consensus 199 l~l~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~c~ 233 (240)
++++++.+.+. +...+.. ...+++|++|++++|+
T Consensus 216 L~Ls~N~i~~~-g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 216 LNVAYNGAGDT-AALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp EECCSSCCCHH-HHHHHHHHHHHCSSCCEEECTTSS
T ss_pred EECCCCCCCHH-HHHHHHHHHHhCCCCCEEeccCCC
Confidence 99999999887 4443332 2578999999999886
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=8.6e-15 Score=127.40 Aligned_cols=174 Identities=15% Similarity=0.157 Sum_probs=92.7
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecCCCCCCHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGI 122 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~ 122 (240)
.+++|++|+++++ .+++.++..++......+++|++|++++| .+++.++..++. .+++|++|+++++ .+++.+.
T Consensus 225 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 301 (461)
T 1z7x_W 225 SKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGA 301 (461)
T ss_dssp HCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHH
T ss_pred hCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHH
Confidence 4566666666663 46666655555544334566666666665 666655444433 3566666666655 4666555
Q ss_pred HHHHHcC----CcCCEEeccCCCCCCHHHHHHHH---HhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCcc
Q 026356 123 QHLVKNC----KHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRF 195 (240)
Q Consensus 123 ~~l~~~~----~~L~~L~l~~c~~ltd~~l~~l~---~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~ 195 (240)
..+...+ ++|++|++++| .+++.+...++ ..+++|+.|++++| .+++.+...++.. .....+.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~--------l~~~~~~ 371 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQG--------LGQPGSV 371 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHH--------HTSTTCC
T ss_pred HHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHH--------HcCCCCc
Confidence 5554432 36666666666 45554433322 23566666666664 5666655555432 0012345
Q ss_pred ceeecccCCCCCchhHHHHHH-Hhhcccccchhhhhhhh
Q 026356 196 FQAVQINSSNGGDHLAFAYII-ETNTYKHGKEKHIIETI 233 (240)
Q Consensus 196 L~~l~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~ 233 (240)
|+.++++.+.+.+. +...+. ....+++|++|++++|+
T Consensus 372 L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 372 LRVLWLADCDVSDS-SCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCEEECTTSCCCHH-HHHHHHHHHHHCCCCCEEECCSSS
T ss_pred eEEEECCCCCCChh-hHHHHHHHHHhCCCccEEECCCCC
Confidence 66666666666553 222221 11446666666666554
No 15
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=2.2e-14 Score=121.50 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=83.4
Q ss_pred cCC-CCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cC-CCCCEEEecCCCCCCHH
Q 026356 46 RYR-HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TC-PELKVFSIYWNVRVTDI 120 (240)
Q Consensus 46 ~~~-~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~-~~L~~L~l~~~~~l~~~ 120 (240)
.++ +|++|++++ +.+++.+...++.......++|++|++++| .+++.+...++. .+ ++|++|++++| .+++.
T Consensus 48 ~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 124 (362)
T 3goz_A 48 NTPASVTSLNLSG-NSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSK 124 (362)
T ss_dssp TCCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGS
T ss_pred hCCCceeEEECcC-CCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcH
Confidence 444 566666665 345554444444432222255555555554 444333322222 22 45555555554 34443
Q ss_pred HHHHHHHc----CCcCCEEeccCCCCCCHHHHHHHHH---hCC-CCcEEeccCCCCCCHHHHHHHHHh---ChhhhhHH-
Q 026356 121 GIQHLVKN----CKHIIDLNLSGCKNLLDKSLQLIAD---NYQ-ELESLNLTRYVNMILLGLFYIWSN---NILLMSEF- 188 (240)
Q Consensus 121 ~~~~l~~~----~~~L~~L~l~~c~~ltd~~l~~l~~---~~~-~L~~L~l~~c~~it~~~~~~l~~~---~~~~l~~l- 188 (240)
+...+... +++|++|++++| .+++.+...++. ..+ +|+.|++++| .+++.+...++.. ++..++.+
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEE
Confidence 33333221 235555555555 454433333222 122 4555555553 4444333222211 11011111
Q ss_pred -----------------HhcCCccceeecccCCCCCchhHHHHHH-Hhhcccccchhhhhhhh
Q 026356 189 -----------------IYHGIRFFQAVQINSSNGGDHLAFAYII-ETNTYKHGKEKHIIETI 233 (240)
Q Consensus 189 -----------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~ 233 (240)
.....+.|+.++++++.+.+. +...+. ....+++|+.|++++|.
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP-SLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC-CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH-HHHHHHHHHhcCCCccEEEeccCC
Confidence 112235688888888887775 222221 12567778888887776
No 16
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=4.7e-14 Score=119.48 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=127.2
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCC-CccEEecCCCCCCcHHHHHHHHh---
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQ-DLESLNLNGCQKISDKGIEIISS--- 101 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~l~~--- 101 (240)
++++.+.. .. .+..+ ....++|++|+++++ .+++.+...++..+ ..++ +|++|++++| .+++.+...++.
T Consensus 3 ~~ls~n~~-~~-~~~~~-~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 3 YKLTLHPG-SN-PVEEF-TSIPHGVTSLDLSLN-NLYSISTVELIQAF-ANTPASVTSLNLSGN-SLGFKNSDELVQILA 76 (362)
T ss_dssp EECCCCTT-CC-HHHHH-HTSCTTCCEEECTTS-CGGGSCHHHHHHHH-HTCCTTCCEEECCSS-CGGGSCHHHHHHHHH
T ss_pred cccccccc-hH-HHHHH-HhCCCCceEEEccCC-CCChHHHHHHHHHH-HhCCCceeEEECcCC-CCCHHHHHHHHHHHh
Confidence 34555543 22 23333 235556999999994 68888776666554 3446 8999999996 888765555544
Q ss_pred c-CCCCCEEEecCCCCCCHHHHH---HHHHcC-CcCCEEeccCCCCCCHHHHHHHHHh----CCCCcEEeccCCCCCCHH
Q 026356 102 T-CPELKVFSIYWNVRVTDIGIQ---HLVKNC-KHIIDLNLSGCKNLLDKSLQLIADN----YQELESLNLTRYVNMILL 172 (240)
Q Consensus 102 ~-~~~L~~L~l~~~~~l~~~~~~---~l~~~~-~~L~~L~l~~c~~ltd~~l~~l~~~----~~~L~~L~l~~c~~it~~ 172 (240)
. +++|++|++++| .+++.+.. .....+ ++|++|++++| .+++.+...++.. +++|++|++++| .+++.
T Consensus 77 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 153 (362)
T 3goz_A 77 AIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIK 153 (362)
T ss_dssp TSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGS
T ss_pred ccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHH
Confidence 2 489999999998 56654444 434455 79999999999 7998777766653 469999999995 88887
Q ss_pred HHHHHHHh---ChhhhhHH-----------------HhcCC-ccceeecccCCCCCchhHHHHHHHh-hc-ccccchhhh
Q 026356 173 GLFYIWSN---NILLMSEF-----------------IYHGI-RFFQAVQINSSNGGDHLAFAYIIET-NT-YKHGKEKHI 229 (240)
Q Consensus 173 ~~~~l~~~---~~~~l~~l-----------------~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~-~~-~~~L~~L~l 229 (240)
+...++.. .+..++.+ .+..+ +.|+.++++.+.+.+. +...+... .. .++|++|++
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK-SYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh-HHHHHHHHHhcCCCCceEEEC
Confidence 77666543 11112221 11223 3677777777766654 22222211 22 357777777
Q ss_pred hhhh
Q 026356 230 IETI 233 (240)
Q Consensus 230 ~~c~ 233 (240)
++|.
T Consensus 233 s~N~ 236 (362)
T 3goz_A 233 CLNC 236 (362)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7664
No 17
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.49 E-value=2.9e-12 Score=98.52 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=106.2
Q ss_pred hhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecCCCCCCHH
Q 026356 44 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDI 120 (240)
Q Consensus 44 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~ 120 (240)
+...++|++|++++|..+++.++..++... ...++|++|++++| .+++.+...++. ..++|++|++++| .+++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 357899999999995489999999999876 56789999999996 899999887765 4678999999988 79999
Q ss_pred HHHHHHHc---CCcCCEEec--cCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCCHHH
Q 026356 121 GIQHLVKN---CKHIIDLNL--SGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLG 173 (240)
Q Consensus 121 ~~~~l~~~---~~~L~~L~l--~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it~~~ 173 (240)
|+..+++. .++|++|++ +++ .+++++...++. ..++|++|++++| .+++.|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 98888764 458999999 778 899998877665 4689999999995 788876
No 18
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.39 E-value=1e-11 Score=95.42 Aligned_cols=130 Identities=17% Similarity=0.102 Sum_probs=105.8
Q ss_pred CCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHH---cCCcCCEEeccCCCCCCHHHH
Q 026356 75 GSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSL 148 (240)
Q Consensus 75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~c~~ltd~~l 148 (240)
...+.|++|++++|..+++.++..++. .+++|++|++++| .+++.+...+++ ..++|++|++++| .|++.++
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHH
Confidence 456999999999965999999888876 4678999999998 799999877765 4579999999999 8999999
Q ss_pred HHHHHh---CCCCcEEec--cCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHH
Q 026356 149 QLIADN---YQELESLNL--TRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII 216 (240)
Q Consensus 149 ~~l~~~---~~~L~~L~l--~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 216 (240)
..++.. .++|++|++ ++ +.+++.|...++.. +...+.|+.++++++.+.+...++..+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~---------L~~n~~L~~L~L~~n~i~~~~~i~~~L 173 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANM---------LEKNTTLLKFGYHFTQQGPRLRASNAM 173 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHH---------HHHCSSCCEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHH---------HHhCCCcCEEeccCCCCChHHHHHHHH
Confidence 888864 678999999 66 58999999888753 233567999999999887764444443
No 19
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.15 E-value=3.3e-09 Score=81.70 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=104.1
Q ss_pred hHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEec
Q 026356 36 NRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIY 112 (240)
Q Consensus 36 ~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~ 112 (240)
++.+..+ +.+.+.|++|++++.+.|.+.+...+++.. ...+.|+.|+|++| .++|.+.+.|+. .-+.|++|+|+
T Consensus 30 ~~~l~~l-l~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 30 ESCINRL-REDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHHH-HTTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHHH-HhcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecC
Confidence 4455544 347789999999985589999999999987 57789999999996 999999887775 46789999999
Q ss_pred CCCCCCHHHHHHHHHcCC---cCCEEeccCCC--CCCHHHHHHHHH---hCCCCcEEeccCC
Q 026356 113 WNVRVTDIGIQHLVKNCK---HIIDLNLSGCK--NLLDKSLQLIAD---NYQELESLNLTRY 166 (240)
Q Consensus 113 ~~~~l~~~~~~~l~~~~~---~L~~L~l~~c~--~ltd~~l~~l~~---~~~~L~~L~l~~c 166 (240)
++ .+++.|...+++.+. .|++|+++++. .+++.+...++. ..+.|+.|+++++
T Consensus 107 ~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 87 899999999987654 79999998763 578877666554 4678999999874
No 20
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.01 E-value=5.2e-10 Score=82.35 Aligned_cols=128 Identities=16% Similarity=0.289 Sum_probs=76.4
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.+.|++++|... +..+... ...+++|+.|+++++ .+.+. . ....+++|+.|+++++ .++.. +......
T Consensus 19 l~~L~l~~n~l~-~~~~~~~-~~~l~~L~~L~l~~n-~l~~~------~-~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~ 86 (149)
T 2je0_A 19 VKELVLDNSRSN-EGKLEGL-TDEFEELEFLSTINV-GLTSI------A-NLPKLNKLKKLELSDN-RVSGG-LEVLAEK 86 (149)
T ss_dssp CSEEECTTCBCB-TTBCCSC-CTTCTTCCEEECTTS-CCCCC------T-TCCCCTTCCEEECCSS-CCCSC-THHHHHH
T ss_pred CeEEEccCCcCC-hhHHHHH-HhhcCCCcEEECcCC-CCCCc------h-hhhcCCCCCEEECCCC-cccch-HHHHhhh
Confidence 345888877632 1112221 246778888888874 45543 1 1355678888888885 55542 2223334
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHH--HHHHHhCCCCcEEecc
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLT 164 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l--~~l~~~~~~L~~L~l~ 164 (240)
+++|++|+++++ .+++.........+++|+.|++++| .+++... ......+++|+.|+++
T Consensus 87 l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 778888888876 5665433333456778888888887 5654332 1233457778887775
No 21
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.01 E-value=3.5e-11 Score=93.08 Aligned_cols=152 Identities=15% Similarity=0.140 Sum_probs=105.3
Q ss_pred hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356 45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
..+++|+.|++++ +.+.+.. .+ ..+++|++|++++| .+++. ..+. .+++|++|+++++ .+++.....
T Consensus 41 ~~l~~L~~L~l~~-n~i~~l~--~l-----~~l~~L~~L~l~~n-~~~~~--~~l~-~l~~L~~L~l~~n-~l~~~~~~~ 107 (197)
T 4ezg_A 41 AQMNSLTYITLAN-INVTDLT--GI-----EYAHNIKDLTINNI-HATNY--NPIS-GLSNLERLRIMGK-DVTSDKIPN 107 (197)
T ss_dssp HHHHTCCEEEEES-SCCSCCT--TG-----GGCTTCSEEEEESC-CCSCC--GGGT-TCTTCCEEEEECT-TCBGGGSCC
T ss_pred hhcCCccEEeccC-CCccChH--HH-----hcCCCCCEEEccCC-CCCcc--hhhh-cCCCCCEEEeECC-ccCcccChh
Confidence 3667889999988 4565321 11 23488999999987 55442 2233 4888999999987 566544444
Q ss_pred HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCC
Q 026356 125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS 204 (240)
Q Consensus 125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~ 204 (240)
+ ..+++|+.|++++| .+++.....+. .+++|+.|++++|..+++. . .+.+++.|+.++++.+
T Consensus 108 l-~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~-------------~--~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 108 L-SGLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDI-------------M--PLKTLPELKSLNIQFD 169 (197)
T ss_dssp C-TTCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCC-------------G--GGGGCSSCCEEECTTB
T ss_pred h-cCCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCcccc-------------H--hhcCCCCCCEEECCCC
Confidence 4 36789999999999 78876565554 5889999999987436552 1 2456788889999888
Q ss_pred CCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 205 NGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+.+.. .+ ..+++|+.|++.+.+
T Consensus 170 ~i~~~~----~l--~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 170 GVHDYR----GI--EDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCCCCT----TG--GGCSSCCEEEECBC-
T ss_pred CCcChH----Hh--ccCCCCCEEEeeCcc
Confidence 887752 22 678889999887654
No 22
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=3e-09 Score=89.98 Aligned_cols=149 Identities=12% Similarity=0.162 Sum_probs=78.7
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh-cCCCCCEEEecCCCC--CCHH--
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS-TCPELKVFSIYWNVR--VTDI-- 120 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~-~~~~L~~L~l~~~~~--l~~~-- 120 (240)
.+|+|+.|+++++..+.-.. -.+++|++|++..| .+++.++..++. .+|+|++|+|+.+.+ ..+.
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~---------~~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK---------KPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS---------CBCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred cCCCCcEEEEeCCCCceecc---------ccCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 56677777776642221100 11366777777664 566666666654 466777776642111 1111
Q ss_pred -HHHHHH--HcCCcCCEEeccCCCCCCHHHHHHHHH--hCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCcc
Q 026356 121 -GIQHLV--KNCKHIIDLNLSGCKNLLDKSLQLIAD--NYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRF 195 (240)
Q Consensus 121 -~~~~l~--~~~~~L~~L~l~~c~~ltd~~l~~l~~--~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~ 195 (240)
.+..+. ..+|+|+.|++++| .+++.+...++. .+|+|+.|++++ +.+++.|...+..+ + ..+++
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~----L-----~~l~~ 308 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDH----V-----DKIKH 308 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTT----H-----HHHTT
T ss_pred HHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhh----c-----ccCCc
Confidence 111111 23566777777666 566655555554 355667777765 35666666555432 1 12345
Q ss_pred ceeecccCCCCCchhHHHHHH
Q 026356 196 FQAVQINSSNGGDHLAFAYII 216 (240)
Q Consensus 196 L~~l~l~~~~~~~~~~~~~~~ 216 (240)
|+.++++.+.+.+. ....+.
T Consensus 309 L~~L~L~~n~i~d~-~~~~l~ 328 (362)
T 2ra8_A 309 LKFINMKYNYLSDE-MKKELQ 328 (362)
T ss_dssp CSEEECCSBBCCHH-HHHHHH
T ss_pred ceEEECCCCcCCHH-HHHHHH
Confidence 66666666666555 344444
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.98 E-value=5.9e-10 Score=93.28 Aligned_cols=37 Identities=5% Similarity=0.125 Sum_probs=22.1
Q ss_pred cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+++.|+.++++.+.+.+... + ..+++|++|++.+|+
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~----~--~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP----L--ASLSKMDSADFANQV 344 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG----G--GGCTTCSEESSSCC-
T ss_pred hccccCCEEEccCCccccccC----h--hhhhccceeehhhhc
Confidence 445666677776666665522 2 456777777776654
No 24
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.94 E-value=2.7e-11 Score=100.37 Aligned_cols=36 Identities=0% Similarity=-0.121 Sum_probs=25.3
Q ss_pred ccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356 194 RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 235 (240)
Q Consensus 194 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 235 (240)
+.|+.++++.+.+.+. . . + ..+++|++|++.+++-.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p--~-~--~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-P--S-P--DELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SEEEEEECCSSCCCSC-C--C-T--TTSCEEEEEECTTCTTT
T ss_pred CCceEEECCCCCCCCC-h--h-H--hhCCCCCEEeccCCCCC
Confidence 5678888888877665 1 1 3 56788888888877643
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.93 E-value=5.7e-10 Score=86.18 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=106.1
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|+++++.... +. .+..+++|++|++++| .+.+.. . ...+++|++|+++++ .+++.....++ .+
T Consensus 47 ~~L~l~~n~i~~---l~--~l~~l~~L~~L~l~~n-~~~~~~--~-----l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l 111 (197)
T 4ezg_A 47 TYITLANINVTD---LT--GIEYAHNIKDLTINNI-HATNYN--P-----ISGLSNLERLRIMGK-DVTSDKIPNLS-GL 111 (197)
T ss_dssp CEEEEESSCCSC---CT--TGGGCTTCSEEEEESC-CCSCCG--G-----GTTCTTCCEEEEECT-TCBGGGSCCCT-TC
T ss_pred cEEeccCCCccC---hH--HHhcCCCCCEEEccCC-CCCcch--h-----hhcCCCCCEEEeECC-ccCcccChhhc-CC
Confidence 349999887432 22 2458899999999996 555432 1 245699999999995 77765554444 48
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|+++++ .+++.....+ ..+++|++|++++|..+++.. . ...+++|+.|++++| .+++..
T Consensus 112 ~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n-~i~~~~---------- 175 (197)
T 4ezg_A 112 TSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFD-GVHDYR---------- 175 (197)
T ss_dssp TTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTB-CCCCCT----------
T ss_pred CCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCC-CCcChH----------
Confidence 99999999987 6877665555 478999999999994376643 2 246899999999996 666511
Q ss_pred hhhHHHhcCCccceeecccCCCCCc
Q 026356 184 LMSEFIYHGIRFFQAVQINSSNGGD 208 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~~~~ 208 (240)
.+.+++.|+.++++.+.+.+
T Consensus 176 -----~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -----GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -----TGGGCSSCCEEEECBC----
T ss_pred -----HhccCCCCCEEEeeCcccCC
Confidence 23567889999998887654
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.91 E-value=3.8e-11 Score=98.02 Aligned_cols=192 Identities=11% Similarity=0.033 Sum_probs=90.2
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+++++.. ...... .+..+++|++|++++ +.+....... ...+++|++|+++++..++......+ ..++
T Consensus 36 ~L~l~~n~i-~~~~~~--~~~~~~~L~~L~l~~-n~l~~~~~~~-----~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~ 105 (285)
T 1ozn_A 36 RIFLHGNRI-SHVPAA--SFRACRNLTILWLHS-NVLARIDAAA-----FTGLALLEQLDLSDNAQLRSVDPATF-HGLG 105 (285)
T ss_dssp EEECTTSCC-CEECTT--TTTTCTTCCEEECCS-SCCCEECTTT-----TTTCTTCCEEECCSCTTCCCCCTTTT-TTCT
T ss_pred EEEeeCCcC-CccCHH--HcccCCCCCEEECCC-CccceeCHhh-----cCCccCCCEEeCCCCCCccccCHHHh-cCCc
Confidence 367766652 211111 123566677777766 3344321111 13346666666666422332211111 1355
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL 184 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~ 184 (240)
+|++|+++++ .++.... .....+++|++|+++++ .++......+ ..+++|+.|+++++ .++......+. +.+ .
T Consensus 106 ~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~-~ 178 (285)
T 1ozn_A 106 RLHTLHLDRC-GLQELGP-GLFRGLAALQYLYLQDN-ALQALPDDTF-RDLGNLTHLFLHGN-RISSVPERAFR-GLH-S 178 (285)
T ss_dssp TCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCEECTTTTT-TCT-T
T ss_pred CCCEEECCCC-cCCEECH-hHhhCCcCCCEEECCCC-cccccCHhHh-ccCCCccEEECCCC-cccccCHHHhc-Ccc-c
Confidence 6666666654 2322111 11234455666666655 3432211111 23455555555553 33321110000 000 0
Q ss_pred hhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 185 MSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 185 l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
++. -.+.+++.|+.++++.+.+.+.. ...+ ..+++|+.|++++++-..|
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP--TEAL--APLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--HHHH--TTCTTCCEEECCSSCEECS
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC--HHHc--ccCcccCEEeccCCCccCC
Confidence 111 13355677888888888777652 2334 5788999999888765543
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.90 E-value=1.1e-09 Score=90.60 Aligned_cols=173 Identities=12% Similarity=0.131 Sum_probs=89.3
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 105 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 105 (240)
|+++++.... +.. +..+++|+.|+++++ .+.+... ...+++|+.|+++++ .+++. ..+ ..+++
T Consensus 46 L~l~~~~i~~---l~~--~~~l~~L~~L~L~~n-~i~~~~~-------~~~l~~L~~L~L~~n-~l~~~--~~~-~~l~~ 108 (308)
T 1h6u_A 46 LSAFGTGVTT---IEG--VQYLNNLIGLELKDN-QITDLAP-------LKNLTKITELELSGN-PLKNV--SAI-AGLQS 108 (308)
T ss_dssp EECTTSCCCC---CTT--GGGCTTCCEEECCSS-CCCCCGG-------GTTCCSCCEEECCSC-CCSCC--GGG-TTCTT
T ss_pred EEeeCCCccC---chh--hhccCCCCEEEccCC-cCCCChh-------HccCCCCCEEEccCC-cCCCc--hhh-cCCCC
Confidence 7777665322 111 236677777777764 3443221 133466777777764 44432 122 23666
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhh
Q 026356 106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLM 185 (240)
Q Consensus 106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l 185 (240)
|++|+++++ .+++.. . ...+++|++|++++| .+++... ...+++|+.|++++| .+++... + ...+. +
T Consensus 109 L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~--l-~~l~~-L 175 (308)
T 1h6u_A 109 IKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSDLTP--L-ANLSK-L 175 (308)
T ss_dssp CCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCGG--G-TTCTT-C
T ss_pred CCEEECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCCChh--h-cCCCC-C
Confidence 666666665 343311 1 235566666666666 4443221 234566666666664 3433111 0 01000 1
Q ss_pred hHH-----------HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 186 SEF-----------IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 186 ~~l-----------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
+.+ .+..++.|+.++++.+.+.+... + ..+++|+.|++++++-
T Consensus 176 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~----l--~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP----L--ANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG----G--TTCTTCCEEEEEEEEE
T ss_pred CEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc----c--cCCCCCCEEEccCCee
Confidence 111 13456677778887777766531 2 5677888888777653
No 28
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.89 E-value=4e-08 Score=75.68 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=98.9
Q ss_pred CCCCCccEEecCCCCCCcHHHHHHHHhc---CCCCCEEEecCCCCCCHHHHHHHHH---cCCcCCEEeccCCCCCCHHHH
Q 026356 75 GSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSL 148 (240)
Q Consensus 75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~c~~ltd~~l 148 (240)
...+.|++|++++...+.+.+.+.++.. -..|++|+|++| .++|.+...+++ .-+.|++|+++++ .|++.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 4558999999998558999998888763 457999999988 899999877765 4468999999999 8999999
Q ss_pred HHHHHh---CCCCcEEeccCCC--CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHH
Q 026356 149 QLIADN---YQELESLNLTRYV--NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYI 215 (240)
Q Consensus 149 ~~l~~~---~~~L~~L~l~~c~--~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~ 215 (240)
..|++. .+.|+.|+|+++. .+++.|...++.. + ..-+.|..++++++.+.....++..
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a----L-----~~N~tL~~L~l~~~~~g~~~~ia~a 178 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA----I-----EENESLLRVGISFASMEARHRVSEA 178 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH----H-----HHCSSCCEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH----H-----HhCCCcCeEeccCCCccHHHHHHHH
Confidence 999875 4579999998652 5788887777653 2 2234577788876665544333333
No 29
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=6.6e-09 Score=87.90 Aligned_cols=146 Identities=15% Similarity=0.202 Sum_probs=107.7
Q ss_pred cCeE--EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCC--CcHHHHH
Q 026356 22 VPKV--IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQK--ISDKGIE 97 (240)
Q Consensus 22 ~~~~--L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~--l~~~~~~ 97 (240)
+|.+ |+++++.... +.. . ..++|++|+|..| .+++.++..++. ..+|+|++|+|+.+.. ..+.+++
T Consensus 171 ~P~L~~L~L~g~~~l~---l~~--~-~~~~L~~L~L~~~-~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS---IGK--K-PRPNLKSLEIISG-GLPDSVVEDILG---SDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CTTCCEEEEECCBTCB---CCS--C-BCTTCSEEEEECS-BCCHHHHHHHHH---SBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred CCCCcEEEEeCCCCce---ecc--c-cCCCCcEEEEecC-CCChHHHHHHHH---ccCCCCcEEEEeccccccccchhHH
Confidence 3444 9998874221 111 1 4789999999985 699999988875 2459999999864211 1111122
Q ss_pred HHH-----hcCCCCCEEEecCCCCCCHHHHHHHHH--cCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCC
Q 026356 98 IIS-----STCPELKVFSIYWNVRVTDIGIQHLVK--NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYV 167 (240)
Q Consensus 98 ~l~-----~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~ 167 (240)
.++ ..+|+|+.|++.+| .+++.+...+++ .+|+|++|+++++ .+++.+...++. ++++|+.|++++|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n- 317 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN- 317 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-
T ss_pred HHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-
Confidence 121 25899999999988 788888777775 6789999999988 899998888764 4789999999986
Q ss_pred CCCHHHHHHHHHh
Q 026356 168 NMILLGLFYIWSN 180 (240)
Q Consensus 168 ~it~~~~~~l~~~ 180 (240)
.+++.++..+...
T Consensus 318 ~i~d~~~~~l~~a 330 (362)
T 2ra8_A 318 YLSDEMKKELQKS 330 (362)
T ss_dssp BCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 7999999988764
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.86 E-value=1.3e-10 Score=100.82 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=32.6
Q ss_pred CCCCccEEecCCCCCCcHHHHHH-HHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCC
Q 026356 76 SLQDLESLNLNGCQKISDKGIEI-ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 140 (240)
Q Consensus 76 ~~~~L~~L~l~~c~~l~~~~~~~-l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 140 (240)
.+++|++|++++| .+++..... ....+++|++|+++++ .++......+...+++|++|+++++
T Consensus 101 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 101 GLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 3466666666664 555433322 1123666667766665 3433222222345666777777666
No 31
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.85 E-value=1.3e-09 Score=90.04 Aligned_cols=158 Identities=11% Similarity=0.130 Sum_probs=103.9
Q ss_pred hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356 45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
..+++|++|+++++ .+.+.. . ...+++|+.|+++++ .+++..- ...+++|++|+++++ .+++.. .
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l~--~-----~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~--~ 102 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTIE--G-----VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNVS--A 102 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCCT--T-----GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCCG--G
T ss_pred HHcCCcCEEEeeCC-CccCch--h-----hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCch--h
Confidence 36789999999995 455421 1 134599999999996 6654322 346899999999988 455421 2
Q ss_pred HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHH-----------HhcCC
Q 026356 125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEF-----------IYHGI 193 (240)
Q Consensus 125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l-----------~~~~~ 193 (240)
...+++|+.|++++| .+++.. . ...+++|+.|++++| .+++... + ...+ .++.+ .+.++
T Consensus 103 -~~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~--l-~~l~-~L~~L~l~~n~l~~~~~l~~l 172 (308)
T 1h6u_A 103 -IAGLQSIKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLN-QITNISP--L-AGLT-NLQYLSIGNAQVSDLTPLANL 172 (308)
T ss_dssp -GTTCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCGG--G-GGCT-TCCEEECCSSCCCCCGGGTTC
T ss_pred -hcCCCCCCEEECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCcCcc--c-cCCC-CccEEEccCCcCCCChhhcCC
Confidence 346889999999999 677632 2 246899999999996 5554221 1 1111 12221 14556
Q ss_pred ccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 194 RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 194 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
+.|+.++++.+.+.+... + ..+++|+.|++++|.
T Consensus 173 ~~L~~L~l~~n~l~~~~~----l--~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISP----L--ASLPNLIEVHLKNNQ 206 (308)
T ss_dssp TTCCEEECCSSCCCCCGG----G--GGCTTCCEEECTTSC
T ss_pred CCCCEEECCCCccCcChh----h--cCCCCCCEEEccCCc
Confidence 667777777777765532 2 567788888877764
No 32
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.85 E-value=6e-11 Score=98.15 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=29.8
Q ss_pred CCCCCEEEecCCCCCCHHHHHHH--HHcCCcCCEEeccCCCCCCH--HHHHHHHHhCCCCcEEeccCC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHL--VKNCKHIIDLNLSGCKNLLD--KSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~c~~ltd--~~l~~l~~~~~~L~~L~l~~c 166 (240)
+++|++|+++++.-.++.++... ...+++|++|++++| .++. .....+...+++|++|+++++
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 45566666665522222222211 134556666666666 4542 222223344566666666663
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.85 E-value=3e-09 Score=88.99 Aligned_cols=41 Identities=7% Similarity=0.141 Sum_probs=30.0
Q ss_pred hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
+.+++.|+.++++.+.+.+. .. ..+ ..+++|+.|++++|+-
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~-~~-~~l--~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNE-DM-EVI--GGLTNLTTLFLSQNHI 323 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGG-GH-HHH--HTCTTCSEEECCSSSC
T ss_pred hcCCCCCCEEECcCCcCCCc-Ch-hHh--hccccCCEEEccCCcc
Confidence 35677888999988887765 22 233 4788999999988863
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.81 E-value=1.9e-10 Score=93.42 Aligned_cols=172 Identities=14% Similarity=0.131 Sum_probs=92.8
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|++.++..... .. +..+++|++|+++++ .+.+. .. ...+++|++|+++++ .++...-..+ ..++
T Consensus 45 ~L~l~~~~i~~~---~~--l~~l~~L~~L~l~~n-~l~~~--~~-----l~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~ 109 (272)
T 3rfs_A 45 QIIANNSDIKSV---QG--IQYLPNVRYLALGGN-KLHDI--SA-----LKELTNLTYLILTGN-QLQSLPNGVF-DKLT 109 (272)
T ss_dssp EEECTTSCCCCC---TT--GGGCTTCCEEECTTS-CCCCC--GG-----GTTCTTCCEEECTTS-CCCCCCTTTT-TTCT
T ss_pred eeeeCCCCcccc---cc--cccCCCCcEEECCCC-CCCCc--hh-----hcCCCCCCEEECCCC-ccCccChhHh-cCCc
Confidence 377777663321 22 346788888888874 45542 11 245578888888885 5543221111 2477
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL 184 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~ 184 (240)
+|++|+++++ .++...- .....+++|+.|++++| .++..... ....+++|+.|++++| .+++.. +.
T Consensus 110 ~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~--------~~- 175 (272)
T 3rfs_A 110 NLKELVLVEN-QLQSLPD-GVFDKLTNLTYLNLAHN-QLQSLPKG-VFDKLTNLTELDLSYN-QLQSLP--------EG- 175 (272)
T ss_dssp TCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC--------TT-
T ss_pred CCCEEECCCC-cCCccCH-HHhccCCCCCEEECCCC-ccCccCHH-HhccCccCCEEECCCC-CcCccC--------HH-
Confidence 7888888876 4442111 11235677888888887 56532211 1134677888888875 444210 00
Q ss_pred hhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 185 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 185 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+.+++.|+.++++.+.+..... ..+ ..+++|+.|++.+++
T Consensus 176 ----~~~~l~~L~~L~L~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 176 ----VFDKLTQLKDLRLYQNQLKSVPD--GVF--DRLTSLQYIWLHDNP 216 (272)
T ss_dssp ----TTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred ----HhcCCccCCEEECCCCcCCccCH--HHH--hCCcCCCEEEccCCC
Confidence 22445566666666555554311 111 345555555555443
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.79 E-value=3.4e-09 Score=86.90 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=112.3
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|++++|....- .. +..+++|+.|+++++ .+.+..- ...+++|+.|+++++ .+++ +.. ...+
T Consensus 49 ~~L~l~~~~i~~~---~~--~~~l~~L~~L~L~~n-~l~~~~~-------l~~l~~L~~L~l~~n-~l~~--~~~-l~~l 111 (291)
T 1h6t_A 49 DQIIANNSDIKSV---QG--IQYLPNVTKLFLNGN-KLTDIKP-------LANLKNLGWLFLDEN-KVKD--LSS-LKDL 111 (291)
T ss_dssp CEEECTTSCCCCC---TT--GGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCC--GGG-GTTC
T ss_pred cEEEccCCCcccC---hh--HhcCCCCCEEEccCC-ccCCCcc-------cccCCCCCEEECCCC-cCCC--Chh-hccC
Confidence 3488888764322 22 347889999999984 5554221 245689999999995 6655 222 2358
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|+++++ .+++. . -...+++|+.|++++| .+++. ..+ ..+++|+.|++++| .+++..
T Consensus 112 ~~L~~L~L~~n-~i~~~--~-~l~~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L~~L~L~~N-~l~~~~---------- 172 (291)
T 1h6t_A 112 KKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNN-KITDI--TVL-SRLTKLDTLSLEDN-QISDIV---------- 172 (291)
T ss_dssp TTCCEEECTTS-CCCCC--G-GGGGCTTCCEEECCSS-CCCCC--GGG-GGCTTCSEEECCSS-CCCCCG----------
T ss_pred CCCCEEECCCC-cCCCC--h-hhcCCCCCCEEEccCC-cCCcc--hhh-ccCCCCCEEEccCC-ccccch----------
Confidence 89999999987 55542 2 2346789999999999 67654 222 45889999999985 565421
Q ss_pred hhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 184 LMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+.+++.|+.++++.+.+.+... + ..+++|+.|++.+++
T Consensus 173 -----~l~~l~~L~~L~L~~N~i~~l~~----l--~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 -----PLAGLTKLQNLYLSKNHISDLRA----L--AGLKNLDVLELFSQE 211 (291)
T ss_dssp -----GGTTCTTCCEEECCSSCCCBCGG----G--TTCTTCSEEEEEEEE
T ss_pred -----hhcCCCccCEEECCCCcCCCChh----h--ccCCCCCEEECcCCc
Confidence 14567889999999888877521 3 678899999988765
No 36
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.79 E-value=6.4e-10 Score=91.94 Aligned_cols=177 Identities=14% Similarity=0.044 Sum_probs=114.1
Q ss_pred EeccCCCCCCh-HHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcH-HHHHHH--Hh
Q 026356 26 IDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KGIEII--SS 101 (240)
Q Consensus 26 L~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l--~~ 101 (240)
|++++|..... ..+.......+++|++|+++++ .+....... ...+++|++|+++++ .+.. .++..- ..
T Consensus 122 L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 122 LRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQ-----VRAFPALTSLDLSDN-PGLGERGLMAALCPH 194 (310)
T ss_dssp CEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTS-----CCCCTTCCEEECCSC-TTCHHHHHHTTSCTT
T ss_pred EEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHH-----hccCCCCCEEECCCC-CCccchhhhHHHhhh
Confidence 77777764321 1122222336888999999884 453322111 245689999999996 5443 333211 13
Q ss_pred cCCCCCEEEecCCCCCC--HHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHH--hCCCCcEEeccCCCCCCHHHHHHH
Q 026356 102 TCPELKVFSIYWNVRVT--DIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD--NYQELESLNLTRYVNMILLGLFYI 177 (240)
Q Consensus 102 ~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~--~~~~L~~L~l~~c~~it~~~~~~l 177 (240)
.+++|++|++++| .++ ......+...+++|++|+++++ .+++.....+.. ..++|+.|+++++ .++. +
T Consensus 195 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~-----l 266 (310)
T 4glp_A 195 KFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ-----V 266 (310)
T ss_dssp SSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS-----C
T ss_pred cCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCc-----h
Confidence 6889999999998 676 3333445578899999999999 676542111211 1379999999995 6652 1
Q ss_pred HHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 178 WSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 178 ~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
+. .-.+.|+.++++++.+... . .+ ..+++|+.|++.+++-
T Consensus 267 ----p~-------~~~~~L~~L~Ls~N~l~~~-~---~~--~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 267 ----PK-------GLPAKLRVLDLSSNRLNRA-P---QP--DELPEVDNLTLDGNPF 306 (310)
T ss_dssp ----CS-------CCCSCCSCEECCSCCCCSC-C---CT--TSCCCCSCEECSSTTT
T ss_pred ----hh-------hhcCCCCEEECCCCcCCCC-c---hh--hhCCCccEEECcCCCC
Confidence 11 1126789999999988864 1 12 5779999999988764
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.78 E-value=2e-09 Score=80.79 Aligned_cols=108 Identities=27% Similarity=0.326 Sum_probs=48.3
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
..++|+.|++++| .+.+..+.... ..+++|+.|++++| .++.. ..+ ..+++|++|+++++ .++.. +..+
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~~----~~l~~L~~L~l~~n-~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~~-~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGLT----AEFVNLEFLSLINV-GLISV--SNL-PKLPKLKKLELSEN-RIFGG-LDML 90 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSCC----GGGGGCCEEEEESS-CCCCC--SSC-CCCSSCCEEEEESC-CCCSC-CCHH
T ss_pred CcccCCEEECCCC-CCChhhHHHHH----HhCCCCCEEeCcCC-CCCCh--hhh-ccCCCCCEEECcCC-cCchH-HHHH
Confidence 3355666666664 34321111111 12356666666664 34432 111 23555666666555 33321 2223
Q ss_pred HHcCCcCCEEeccCCCCCCHHHH-HHHHHhCCCCcEEeccCC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRY 166 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l-~~l~~~~~~L~~L~l~~c 166 (240)
...+++|+.|++++| .+++... ..+ ..+++|+.|++++|
T Consensus 91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l-~~l~~L~~L~l~~N 130 (168)
T 2ell_A 91 AEKLPNLTHLNLSGN-KLKDISTLEPL-KKLECLKSLDLFNC 130 (168)
T ss_dssp HHHCTTCCEEECBSS-SCCSSGGGGGG-SSCSCCCEEECCSS
T ss_pred HhhCCCCCEEeccCC-ccCcchhHHHH-hcCCCCCEEEeeCC
Confidence 334555555555555 4443211 111 23555555555553
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.78 E-value=8.2e-11 Score=96.04 Aligned_cols=169 Identities=11% Similarity=0.076 Sum_probs=100.2
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
..++|++|++++ +.++...... ...+++|++|+++++ .++......+. .+++|++|+++++..++......
T Consensus 30 ~~~~l~~L~l~~-n~i~~~~~~~-----~~~~~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~- 100 (285)
T 1ozn_A 30 IPAASQRIFLHG-NRISHVPAAS-----FRACRNLTILWLHSN-VLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPAT- 100 (285)
T ss_dssp CCTTCSEEECTT-SCCCEECTTT-----TTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTT-
T ss_pred CCCCceEEEeeC-CcCCccCHHH-----cccCCCCCEEECCCC-ccceeCHhhcC-CccCCCEEeCCCCCCccccCHHH-
Confidence 456899999999 5566533222 245689999999995 66543222222 48999999999885354332222
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHH-------------HhcC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEF-------------IYHG 192 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l-------------~~~~ 192 (240)
...+++|++|+++++ .++......+ ..+++|+.|+++++ .++......+. ..+ .++.+ .+.+
T Consensus 101 ~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~-~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRC-GLQELGPGLF-RGLAALQYLYLQDN-ALQALPDDTFR-DLG-NLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTT-TCT-TCCEEECCSSCCCEECTTTTTT
T ss_pred hcCCcCCCEEECCCC-cCCEECHhHh-hCCcCCCEEECCCC-cccccCHhHhc-cCC-CccEEECCCCcccccCHHHhcC
Confidence 246789999999999 6664322222 35889999999995 55432111110 111 11111 1344
Q ss_pred CccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356 193 IRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET 232 (240)
Q Consensus 193 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 232 (240)
++.|+.++++.+.+.+.. ...+ ..+++|+.|+++++
T Consensus 176 l~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVH--PHAF--RDLGRLMTLYLFAN 211 (285)
T ss_dssp CTTCCEEECCSSCCCEEC--TTTT--TTCTTCCEEECCSS
T ss_pred ccccCEEECCCCcccccC--HhHc--cCcccccEeeCCCC
Confidence 556666666666655431 1112 45667777777665
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.78 E-value=8e-11 Score=102.11 Aligned_cols=194 Identities=10% Similarity=0.002 Sum_probs=115.0
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCc-HHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIE-DRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~-~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
+.|++++|.. ...... .+..+++|++|+++++. +. ...... ...+++|++|+++++ .++......+. .
T Consensus 33 ~~L~Ls~n~i-~~~~~~--~~~~l~~L~~L~L~~n~-~~~~i~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~ 101 (455)
T 3v47_A 33 NYVDLSLNSI-AELNET--SFSRLQDLQFLKVEQQT-PGLVIRNNT-----FRGLSSLIILKLDYN-QFLQLETGAFN-G 101 (455)
T ss_dssp CEEECCSSCC-CEECTT--TTSSCTTCCEEECCCCS-TTCEECTTT-----TTTCTTCCEEECTTC-TTCEECTTTTT-T
T ss_pred CEEEecCCcc-CcCChh--HhccCccccEEECcCCc-ccceECccc-----ccccccCCEEeCCCC-ccCccChhhcc-C
Confidence 4599999873 322112 23588999999999953 32 111111 244699999999996 55543222222 4
Q ss_pred CCCCCEEEecCCCCCCHHHHHH-HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQH-LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN 181 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~-l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~ 181 (240)
+++|++|++++| .+++..... ....+++|++|+++++ .++......+...+++|+.|+++++ .++......+..-.
T Consensus 102 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 102 LANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQ 178 (455)
T ss_dssp CTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGT
T ss_pred cccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccc
Confidence 899999999988 676544332 2357889999999999 6765433333356899999999996 55432111111100
Q ss_pred hhhhhHHH---------------------hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356 182 ILLMSEFI---------------------YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET 232 (240)
Q Consensus 182 ~~~l~~l~---------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 232 (240)
...++.+. ...++.|+.++++.+.+... ....+......++|+.|++.++
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES-MAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH-HHHHHHHHTTTCCEEEEECTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc-chhhhhccccccceeeEeeccc
Confidence 00011100 12346788899988887765 2333332223355666655554
No 40
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.77 E-value=1.1e-10 Score=94.63 Aligned_cols=176 Identities=13% Similarity=0.144 Sum_probs=88.9
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+++++.... +..-.+..+++|++|++++ +.+..... .....+++|++|+++++ .++...... ...++
T Consensus 41 ~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~-n~l~~i~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~ 109 (270)
T 2o6q_A 41 KLDLQSNKLSS---LPSKAFHRLTKLRLLYLND-NKLQTLPA-----GIFKELKNLETLWVTDN-KLQALPIGV-FDQLV 109 (270)
T ss_dssp EEECCSSCCSC---CCTTSSSSCTTCCEEECCS-SCCSCCCT-----TTTSSCTTCCEEECCSS-CCCCCCTTT-TTTCS
T ss_pred EEECcCCCCCe---eCHHHhcCCCCCCEEECCC-CccCeeCh-----hhhcCCCCCCEEECCCC-cCCcCCHhH-ccccc
Confidence 47777776321 1111234677788888877 34442111 11234577888888774 444322111 12467
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL 184 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~ 184 (240)
+|++|+++++ .++..... ....+++|++|+++++ .++......+ ..+++|+.|+++++ .++....
T Consensus 110 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~---------- 174 (270)
T 2o6q_A 110 NLAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYN-ELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPE---------- 174 (270)
T ss_dssp SCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCT----------
T ss_pred CCCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCC-cCCccCHhHc-cCCcccceeEecCC-cCcEeCh----------
Confidence 7788877765 33322111 1235677777777777 5553221111 34677777777774 4432100
Q ss_pred hhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 185 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 185 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
-.+.+++.|+.++++.+.+..... ..+ ..+++|+.|++.++|
T Consensus 175 ---~~~~~l~~L~~L~L~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 ---GAFDKLTELKTLKLDNNQLKRVPE--GAF--DSLEKLKMLQLQENP 216 (270)
T ss_dssp ---TTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred ---hHhccCCCcCEEECCCCcCCcCCH--HHh--ccccCCCEEEecCCC
Confidence 022345556666665555543310 111 345566666665544
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.77 E-value=6.4e-10 Score=93.53 Aligned_cols=44 Identities=5% Similarity=-0.070 Sum_probs=30.6
Q ss_pred hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
+.+++.|+.++++.+.+... . ..++ ..+++|++|++.+++-.+|
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i-~-~~~~--~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSV-P-DGIF--DRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCC-C-TTTT--TTCTTCCEEECCSSCBCCC
T ss_pred HhcccCCCEEECCCCCCCcc-C-HHHH--hcCCCCCEEEeeCCCccCc
Confidence 46678888999988877643 1 1122 5678899999888776554
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.76 E-value=5.4e-11 Score=99.40 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=28.5
Q ss_pred hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
+.+++.|+.++++.+....... ..+ ..+++|+.|++++|+..+.
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p--~~~--~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLP--LDI--HRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCC--TTG--GGCTTCCEEECTTCTTCCC
T ss_pred hcCCCCCCEEECCCCCchhhcc--hhh--hcCCCCCEEeCCCCCchhh
Confidence 3556778888887765554421 112 5678888888888876553
No 43
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.74 E-value=2.8e-09 Score=96.05 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=111.0
Q ss_pred EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356 26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 105 (240)
Q Consensus 26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 105 (240)
|+++++.... +.. +..+++|+.|+|+++ .+.+... + ..+++|+.|+++++ .+++. ..+ ..+++
T Consensus 48 L~l~~n~i~~---l~~--l~~l~~L~~L~Ls~N-~l~~~~~--l-----~~l~~L~~L~Ls~N-~l~~l--~~l-~~l~~ 110 (605)
T 1m9s_A 48 IIANNSDIKS---VQG--IQYLPNVTKLFLNGN-KLTDIKP--L-----TNLKNLGWLFLDEN-KIKDL--SSL-KDLKK 110 (605)
T ss_dssp CBCTTCCCCC---CTT--GGGCTTCCEEECTTS-CCCCCGG--G-----GGCTTCCEEECCSS-CCCCC--TTS-TTCTT
T ss_pred EECcCCCCCC---ChH--HccCCCCCEEEeeCC-CCCCChh--h-----ccCCCCCEEECcCC-CCCCC--hhh-ccCCC
Confidence 7777776322 122 347889999999985 4544221 1 34589999999996 55542 222 24888
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhh
Q 026356 106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLM 185 (240)
Q Consensus 106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l 185 (240)
|++|++++| .+++. .. ...+++|+.|++++| .+++. ..+ ..+++|+.|+|++| .+++.
T Consensus 111 L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N-~l~~l--~~l-~~l~~L~~L~Ls~N-~l~~~------------- 168 (605)
T 1m9s_A 111 LKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNN-KITDI--TVL-SRLTKLDTLSLEDN-QISDI------------- 168 (605)
T ss_dssp CCEEECTTS-CCCCC--GG-GGGCTTCSEEECCSS-CCCCC--GGG-GSCTTCSEEECCSS-CCCCC-------------
T ss_pred CCEEEecCC-CCCCC--cc-ccCCCccCEEECCCC-ccCCc--hhh-cccCCCCEEECcCC-cCCCc-------------
Confidence 999999987 45442 22 347789999999999 67654 222 35889999999986 55431
Q ss_pred hHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356 186 SEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 236 (240)
Q Consensus 186 ~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 236 (240)
. .+..++.|+.|+++.+.+.+.. .+ ..+++|+.|++.+|+-.+
T Consensus 169 ~--~l~~l~~L~~L~Ls~N~i~~l~----~l--~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 V--PLAGLTKLQNLYLSKNHISDLR----AL--AGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G--GGTTCTTCCEEECCSSCCCBCG----GG--TTCTTCSEEECCSEEEEC
T ss_pred h--hhccCCCCCEEECcCCCCCCCh----HH--ccCCCCCEEEccCCcCcC
Confidence 0 1466788999999888887652 13 678899999998876543
No 44
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=3.7e-09 Score=77.71 Aligned_cols=109 Identities=25% Similarity=0.300 Sum_probs=62.3
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
..++|+.|+++++ .+.+..+... ...+++|+.|+++++ .+++. .. ...+++|++|+++++ .++.. +...
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~Ls~n-~i~~~-~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEGL----TDEFEELEFLSTINV-GLTSI--AN-LPKLNKLKKLELSDN-RVSGG-LEVL 83 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCSC----CTTCTTCCEEECTTS-CCCCC--TT-CCCCTTCCEEECCSS-CCCSC-THHH
T ss_pred CCccCeEEEccCC-cCChhHHHHH----HhhcCCCcEEECcCC-CCCCc--hh-hhcCCCCCEEECCCC-cccch-HHHH
Confidence 4467888888874 4552211111 234577788888775 55543 22 224667777777766 44432 3334
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
...+++|+.|++++| .+++.........+++|+.|++++|
T Consensus 84 ~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 84 AEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp HHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred hhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC
Confidence 445677777777777 5665432222234677777777774
No 45
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.73 E-value=1.9e-09 Score=80.95 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=91.1
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.+.|++++|.. .+..+... +..+++|+.|+++++ .+.+. . ....+++|+.|+++++ .++.. +..+...
T Consensus 26 L~~L~l~~n~l-~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~------~-~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~ 93 (168)
T 2ell_A 26 VRELVLDNCKS-NDGKIEGL-TAEFVNLEFLSLINV-GLISV------S-NLPKLPKLKKLELSEN-RIFGG-LDMLAEK 93 (168)
T ss_dssp CSEEECCSCBC-BTTBCSSC-CGGGGGCCEEEEESS-CCCCC------S-SCCCCSSCCEEEEESC-CCCSC-CCHHHHH
T ss_pred CCEEECCCCCC-ChhhHHHH-HHhCCCCCEEeCcCC-CCCCh------h-hhccCCCCCEEECcCC-cCchH-HHHHHhh
Confidence 45699999973 31222222 347899999999995 46654 1 2466799999999996 66543 2333445
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHH--HHHHHhCCCCcEEeccCC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLTRY 166 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l--~~l~~~~~~L~~L~l~~c 166 (240)
+++|+.|+++++ .+++.........+++|+.|++++| .++.... ......+++|+.|++++|
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 999999999988 6665322123357899999999999 6765432 224456999999999987
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.70 E-value=3.8e-09 Score=85.65 Aligned_cols=170 Identities=11% Similarity=0.097 Sum_probs=110.0
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|++++|..... . .+..+++|++|+++++ .++...... ...+++|+.|+++++ .++...-..+ ..+
T Consensus 66 ~~L~l~~n~l~~~---~--~l~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l 132 (272)
T 3rfs_A 66 RYLALGGNKLHDI---S--ALKELTNLTYLILTGN-QLQSLPNGV-----FDKLTNLKELVLVEN-QLQSLPDGVF-DKL 132 (272)
T ss_dssp CEEECTTSCCCCC---G--GGTTCTTCCEEECTTS-CCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTTTT-TTC
T ss_pred cEEECCCCCCCCc---h--hhcCCCCCCEEECCCC-ccCccChhH-----hcCCcCCCEEECCCC-cCCccCHHHh-ccC
Confidence 3499999984432 2 2358899999999995 565322111 245689999999996 5653221112 358
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|++++| .++.... .....+++|+.|++++| .+++.... ....+++|+.|++++| .++... +.
T Consensus 133 ~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~--------~~ 199 (272)
T 3rfs_A 133 TNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLPEG-VFDKLTQLKDLRLYQN-QLKSVP--------DG 199 (272)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCC--------TT
T ss_pred CCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccCHH-HhcCCccCCEEECCCC-cCCccC--------HH
Confidence 89999999988 5552221 12346789999999999 67743222 2235889999999996 555310 10
Q ss_pred hhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356 184 LMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 235 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 235 (240)
.+..++.|+.++++.+.+. ..||+|+.+.+..+...
T Consensus 200 -----~~~~l~~L~~L~l~~N~~~-----------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 200 -----VFDRLTSLQYIWLHDNPWD-----------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp -----TTTTCTTCCEEECCSSCBC-----------CCTTTTHHHHHHHHHTG
T ss_pred -----HHhCCcCCCEEEccCCCcc-----------ccCcHHHHHHHHHHhCC
Confidence 2466788999999877553 23556666666554433
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.70 E-value=1.1e-08 Score=89.17 Aligned_cols=40 Identities=5% Similarity=-0.028 Sum_probs=28.8
Q ss_pred hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356 190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 235 (240)
Q Consensus 190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 235 (240)
+.+++.|+.++++.+.+.+... + ..+++|+.|++.+|+-.
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~----~--~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP----L--ANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG----G--TTCTTCCEEECCCEEEE
T ss_pred hccCCCCCEEeCCCCccCccch----h--hcCCCCCEEeccCCccc
Confidence 3566778888888888776632 3 67888888888877543
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.67 E-value=9.5e-10 Score=91.23 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=78.3
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 157 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~ 157 (240)
++|+.|+++++ .++......+...+++|++|+++++ .++... .. ..+++|++|++++| .++..... ...+++
T Consensus 144 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~-~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~ 215 (317)
T 3o53_A 144 SRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDVK--GQ-VVFAKLKTLDLSSN-KLAFMGPE--FQSAAG 215 (317)
T ss_dssp SSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEE--CC-CCCTTCCEEECCSS-CCCEECGG--GGGGTT
T ss_pred CCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCcccc--cc-cccccCCEEECCCC-cCCcchhh--hcccCc
Confidence 56666666664 5544333334444666777777665 333220 00 13566777777776 55532111 234567
Q ss_pred CcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356 158 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 236 (240)
Q Consensus 158 L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 236 (240)
|+.|+++++ .++. + +. .+..++.|+.++++.+.+... .....+ ..++.|+.|++..+..+.
T Consensus 216 L~~L~L~~N-~l~~-----l----~~-----~~~~l~~L~~L~l~~N~~~~~-~~~~~~--~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 216 VTWISLRNN-KLVL-----I----EK-----ALRFSQNLEHFDLRGNGFHCG-TLRDFF--SKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CSEEECTTS-CCCE-----E----CT-----TCCCCTTCCEEECTTCCCBHH-HHHHHH--HTCHHHHHHHHHHHHHHH
T ss_pred ccEEECcCC-cccc-----h----hh-----HhhcCCCCCEEEccCCCccCc-CHHHHH--hccccceEEECCCchhcc
Confidence 777777774 4442 0 11 235677899999998888744 345555 678899999998776554
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.66 E-value=6.7e-11 Score=97.50 Aligned_cols=43 Identities=5% Similarity=-0.034 Sum_probs=23.2
Q ss_pred hcCCccceeecccCCCCCchhHHHHHHHhhcc-cccchhhhhhhhhhh
Q 026356 190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTY-KHGKEKHIIETIKTG 236 (240)
Q Consensus 190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~~~ 236 (240)
+.+++.|+.++++.+.+..... . .+ ..+ ++|+.|++++++-.+
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~-~-~~--~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKK-Q-EL--QHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSS-S-SC--CCCCTTCCEEECTTCCEEC
T ss_pred ccCcccCCEeECCCCCCcccCH-H-HH--HhhhccCCEEEccCCCeec
Confidence 3455667777776666654311 0 11 233 367777777665443
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.66 E-value=1.6e-10 Score=93.90 Aligned_cols=194 Identities=14% Similarity=0.074 Sum_probs=112.4
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|++++|.. ...... .+..+++|++|+++++ .+....... ...+++|++|+++++ .++......+ ..+
T Consensus 31 ~~L~ls~n~l-~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l 99 (276)
T 2z62_A 31 KNLDLSFNPL-RHLGSY--SFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLSTLILTGN-PIQSLALGAF-SGL 99 (276)
T ss_dssp CEEECTTCCC-CEECTT--TTTTCTTCSEEECTTC-CCCEECTTT-----TTTCTTCCEEECTTC-CCCEECTTTT-TTC
T ss_pred cEEECCCCcc-cccCHh--HhccccCCcEEECCCC-cCCccCHHH-----ccCCcCCCEEECCCC-ccCccChhhh-cCC
Confidence 3499998873 221111 2347889999999985 555422211 245689999999995 5554322222 247
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHH---HHHHHHHh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL---GLFYIWSN 180 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~---~~~~l~~~ 180 (240)
++|++|+++++ .++...... ...+++|++|+++++ .+++..+......+++|+.|++++| .+++. .+..+..-
T Consensus 100 ~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 100 SSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTC
T ss_pred ccccEEECCCC-CccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhc
Confidence 89999999877 343211111 246789999999998 6654322222245789999999985 55542 22222210
Q ss_pred Ch---h------hhhHH--HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356 181 NI---L------LMSEF--IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 236 (240)
Q Consensus 181 ~~---~------~l~~l--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 236 (240)
.. . .+..+ .......|+.++++.+.+.... ...+ ..+++|+.|++.+++-.+
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~--~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP--DGIF--DRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC--TTTT--TTCCSCCEEECCSSCBCC
T ss_pred cccceeeecCCCcccccCccccCCCcccEEECCCCceeecC--HhHh--cccccccEEEccCCcccc
Confidence 00 0 00000 0112236888888887776542 1223 567889999988655443
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.66 E-value=2.1e-10 Score=100.20 Aligned_cols=132 Identities=15% Similarity=0.214 Sum_probs=77.1
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|+|++|.. ...... .+..+++|++|+++++ .+....... ...+++|++|+++++ .++......+ ..+
T Consensus 35 ~~L~L~~n~l-~~~~~~--~~~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l 103 (477)
T 2id5_A 35 RLLDLGKNRI-KTLNQD--EFASFPHLEELELNEN-IVSAVEPGA-----FNNLFNLRTLGLRSN-RLKLIPLGVF-TGL 103 (477)
T ss_dssp SEEECCSSCC-CEECTT--TTTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCSCCTTSS-TTC
T ss_pred cEEECCCCcc-ceECHh--HccCCCCCCEEECCCC-ccCEeChhh-----hhCCccCCEEECCCC-cCCccCcccc-cCC
Confidence 3488888873 221111 2347888999999884 555432221 244588889998885 5543221111 247
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL 171 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~ 171 (240)
++|++|+++++ .++...-. ....+++|++|+++++ .++......+ ..+++|+.|++++| .++.
T Consensus 104 ~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~ 166 (477)
T 2id5_A 104 SNLTKLDISEN-KIVILLDY-MFQDLYNLKSLEVGDN-DLVYISHRAF-SGLNSLEQLTLEKC-NLTS 166 (477)
T ss_dssp TTCCEEECTTS-CCCEECTT-TTTTCTTCCEEEECCT-TCCEECTTSS-TTCTTCCEEEEESC-CCSS
T ss_pred CCCCEEECCCC-ccccCChh-HccccccCCEEECCCC-ccceeChhhc-cCCCCCCEEECCCC-cCcc
Confidence 88888888876 34322111 1246678888888887 5553222222 24678888888875 4443
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.65 E-value=2e-08 Score=87.52 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=88.6
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.+.|++++|..... .. ...+++|++|+++++ .+.+... ...+++|+.|+++++ .+++. ..+ ..
T Consensus 179 L~~L~l~~n~l~~~---~~--l~~l~~L~~L~l~~n-~l~~~~~-------~~~l~~L~~L~l~~n-~l~~~--~~l-~~ 241 (466)
T 1o6v_A 179 LERLDISSNKVSDI---SV--LAKLTNLESLIATNN-QISDITP-------LGILTNLDELSLNGN-QLKDI--GTL-AS 241 (466)
T ss_dssp CCEEECCSSCCCCC---GG--GGGCTTCSEEECCSS-CCCCCGG-------GGGCTTCCEEECCSS-CCCCC--GGG-GG
T ss_pred CCEEECcCCcCCCC---hh--hccCCCCCEEEecCC-ccccccc-------ccccCCCCEEECCCC-Ccccc--hhh-hc
Confidence 34488887774332 11 346777888888774 3433211 122467777777775 44432 122 24
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 182 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~ 182 (240)
+++|++|++++| .++.... ...+++|+.|++++| .+++... ...+++|+.|++++| .+++... + ...+
T Consensus 242 l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~--~-~~l~ 309 (466)
T 1o6v_A 242 LTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNEN-QLEDISP--I-SNLK 309 (466)
T ss_dssp CTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCSCCGG--G-GGCT
T ss_pred CCCCCEEECCCC-ccccchh---hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCC-cccCchh--h-cCCC
Confidence 666777777665 3332111 235566666666666 4443211 123555666666654 3332100 0 0000
Q ss_pred hhhhHH-----------HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 183 LLMSEF-----------IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 183 ~~l~~l-----------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
. ++.+ .+..++.|+.++++.+.+.+.. .+ ..+++|+.|++++|..
T Consensus 310 ~-L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~l--~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 310 N-LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS----SL--ANLTNINWLSAGHNQI 365 (466)
T ss_dssp T-CSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG----GG--TTCTTCCEEECCSSCC
T ss_pred C-CCEEECcCCcCCCchhhccCccCCEeECCCCccCCch----hh--ccCCCCCEEeCCCCcc
Confidence 0 1110 1345566777777766666541 12 5677777777776653
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.64 E-value=5.3e-10 Score=94.02 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=74.7
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
.+++|+.|+++++ .+++..... ...+++|++|+++++ .++......+ ..+++|++|+++++ .++.......
T Consensus 74 ~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~ 144 (353)
T 2z80_A 74 RCVNLQALVLTSN-GINTIEEDS-----FSSLGSLEHLDLSYN-YLSNLSSSWF-KPLSSLTFLNLLGN-PYKTLGETSL 144 (353)
T ss_dssp TCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCSSCCHHHH-TTCTTCSEEECTTC-CCSSSCSSCS
T ss_pred cCCCCCEEECCCC-ccCccCHhh-----cCCCCCCCEEECCCC-cCCcCCHhHh-CCCccCCEEECCCC-CCcccCchhh
Confidence 5566666666653 344321111 123456666666663 4433221112 23566666666655 3331110011
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 205 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~ 205 (240)
...+++|+.|++++|..++......+ ..+++|+.|+++++ .++.. .+. .+.+++.|+.++++.+.
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~--------~~~-----~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDAS-DLQSY--------EPK-----SLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCCEE--------CTT-----TTTTCSEEEEEEEECSC
T ss_pred hccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCC-CcCcc--------CHH-----HHhccccCCeecCCCCc
Confidence 23455666666666533332111111 23555666666653 33221 000 23456667777777766
Q ss_pred CCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 206 GGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
+... . ..++ ..+++|+.|+++++.
T Consensus 210 l~~~-~-~~~~--~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 210 HILL-L-EIFV--DVTSSVECLELRDTD 233 (353)
T ss_dssp STTH-H-HHHH--HHTTTEEEEEEESCB
T ss_pred cccc-h-hhhh--hhcccccEEECCCCc
Confidence 6433 1 2222 446777777776654
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.63 E-value=8.2e-10 Score=95.67 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=20.7
Q ss_pred cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+++.|+.++++.+.+.... ...+ ..+++|+.|++.++|
T Consensus 252 ~~l~~L~~L~L~~N~l~~~~--~~~~--~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLTLLP--HDLF--TPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTSCCCCCC--TTTT--SSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCCCCccC--hhHh--ccccCCCEEEcCCCC
Confidence 34555666666665555431 1112 345667777766655
No 55
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.62 E-value=4.2e-10 Score=101.07 Aligned_cols=42 Identities=5% Similarity=0.011 Sum_probs=25.3
Q ss_pred cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
.+++.| .++++.+.+.... ...+ ..+++|+.|++.++|-..|
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~--~~~~--~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIIL--PSLL--PILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCC--GGGH--HHHHTSSEEECTTCCEECS
T ss_pred Cccccc-EEECcCCcccccC--Hhhc--ccCCCCCEEeCCCCCcccc
Confidence 455666 7777777666431 1112 3567888888887765443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.61 E-value=8.8e-11 Score=96.77 Aligned_cols=189 Identities=9% Similarity=0.017 Sum_probs=86.8
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHH--HHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~--~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.|+++++.... +..-.+..+++|++|++++ +.++..+ ...+. .+++|++|+++++ .++.-. .-...
T Consensus 32 ~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~-----~~~~L~~L~Ls~n-~i~~l~--~~~~~ 99 (306)
T 2z66_A 32 RLELESNKLQS---LPHGVFDKLTQLTKLSLSS-NGLSFKGCCSQSDF-----GTTSLKYLDLSFN-GVITMS--SNFLG 99 (306)
T ss_dssp EEECCSSCCCC---CCTTTTTTCTTCSEEECCS-SCCCEEEEEEHHHH-----SCSCCCEEECCSC-SEEEEE--EEEET
T ss_pred EEECCCCccCc---cCHhHhhccccCCEEECCC-CccCcccCcccccc-----cccccCEEECCCC-ccccCh--hhcCC
Confidence 47888776321 1111124677888888887 4454321 01111 1366777777764 333100 00113
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 182 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~ 182 (240)
+++|++|+++++ .++..........+++|+.|++++| .++......+ ..+++|+.|+++++ .+++..+.......+
T Consensus 100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIF-NGLSSLEVLKMAGN-SFQENFLPDIFTELR 175 (306)
T ss_dssp CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTT-TTCTTCCEEECTTC-EEGGGEECSCCTTCT
T ss_pred CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCccchhhc-ccCcCCCEEECCCC-ccccccchhHHhhCc
Confidence 556666666554 2222111111234455555555555 3332111111 22445555555543 222200000000000
Q ss_pred hhhhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 183 LLMSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 183 ~~l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
.++. -.+.+++.|+.++++.+.+.+.... .+ ..+++|+.|+++++.-
T Consensus 176 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~--~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 176 -NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--PY--KCLNSLQVLDYSLNHI 235 (306)
T ss_dssp -TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG--GG--TTCTTCCEEECTTSCC
T ss_pred -CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh--hc--cCcccCCEeECCCCCC
Confidence 0000 1335567788888887777654211 12 5678899998888754
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.61 E-value=6.5e-10 Score=96.31 Aligned_cols=176 Identities=14% Similarity=0.117 Sum_probs=96.0
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.+.|+|++|.. ...... .+..+++|++|++++ +.++..... ....+++|+.|+++++ .++...-..+ ..
T Consensus 90 L~~L~Ls~n~i-~~i~~~--~~~~l~~L~~L~L~~-n~l~~~~~~-----~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~ 158 (440)
T 3zyj_A 90 LEILQLSRNHI-RTIEIG--AFNGLANLNTLELFD-NRLTTIPNG-----AFVYLSKLKELWLRNN-PIESIPSYAF-NR 158 (440)
T ss_dssp CCEEECCSSCC-CEECGG--GGTTCSSCCEEECCS-SCCSSCCTT-----TSCSCSSCCEEECCSC-CCCEECTTTT-TT
T ss_pred CCEEECCCCcC-CccChh--hccCCccCCEEECCC-CcCCeeCHh-----HhhccccCceeeCCCC-cccccCHHHh-hh
Confidence 34488888863 221111 234778888888888 455532211 1245578888888884 5543211111 24
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 182 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~ 182 (240)
+++|++|+++++..++..... ....+++|++|++++| .+++.. .+ ..+++|+.|+++++ .+++.. +
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~--~~-~~l~~L~~L~Ls~N-~l~~~~--------~ 224 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLREIP--NL-TPLIKLDELDLSGN-HLSAIR--------P 224 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSSCC--CC-TTCSSCCEEECTTS-CCCEEC--------T
T ss_pred CcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCcccc--cc-CCCcccCEEECCCC-ccCccC--------h
Confidence 777888888775444321111 1235677777777777 555321 11 24667777777774 444310 0
Q ss_pred hhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356 183 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET 232 (240)
Q Consensus 183 ~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 232 (240)
-.+.+++.|+.++++.+.+..... ..+ ..+++|+.|+++++
T Consensus 225 -----~~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 225 -----GSFQGLMHLQKLWMIQSQIQVIER--NAF--DNLQSLVEINLAHN 265 (440)
T ss_dssp -----TTTTTCTTCCEEECTTCCCCEECT--TSS--TTCTTCCEEECTTS
T ss_pred -----hhhccCccCCEEECCCCceeEECh--hhh--cCCCCCCEEECCCC
Confidence 033556666677776666654411 112 35666777776665
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.60 E-value=7.7e-10 Score=96.17 Aligned_cols=189 Identities=13% Similarity=0.058 Sum_probs=95.0
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.+.|+|++|.. ...... .+..+++|++|++++ +.++..... ....+++|++|+++++ .++...-.. ...
T Consensus 101 L~~L~Ls~n~i-~~~~~~--~~~~l~~L~~L~L~~-n~l~~~~~~-----~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~ 169 (452)
T 3zyi_A 101 LEVLQLGRNSI-RQIEVG--AFNGLASLNTLELFD-NWLTVIPSG-----AFEYLSKLRELWLRNN-PIESIPSYA-FNR 169 (452)
T ss_dssp CCEEECCSSCC-CEECTT--TTTTCTTCCEEECCS-SCCSBCCTT-----TSSSCTTCCEEECCSC-CCCEECTTT-TTT
T ss_pred CCEEECCCCcc-CCcChh--hccCcccCCEEECCC-CcCCccChh-----hhcccCCCCEEECCCC-CcceeCHhH-Hhc
Confidence 33488888763 221111 234678888888888 445432211 1234578888888874 454211111 124
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 182 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~ 182 (240)
+++|++|+++++..++..... ....+++|+.|++++| .+++.. .+ ..+++|+.|+++++ .+++..-..+. +.+
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~--~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~ 242 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC-NIKDMP--NL-TPLVGLEELEMSGN-HFPEIRPGSFH-GLS 242 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTS-CCSSCC--CC-TTCTTCCEEECTTS-CCSEECGGGGT-TCT
T ss_pred CCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCC-cccccc--cc-cccccccEEECcCC-cCcccCccccc-Ccc
Confidence 667777777765444321111 1234566666766666 454321 11 23556666666663 34321110000 000
Q ss_pred hhhhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 183 LLMSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 183 ~~l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
.++. -.+.+++.|+.++++.+.+.... ...+ ..+++|+.|++.++|-
T Consensus 243 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~--~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 243 -SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP--HDLF--TPLRYLVELHLHHNPW 302 (452)
T ss_dssp -TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--TTSS--TTCTTCCEEECCSSCE
T ss_pred -CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC--hHHh--ccccCCCEEEccCCCc
Confidence 0111 12355677778888777665431 1112 4567788888776653
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.60 E-value=1.2e-09 Score=94.87 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=110.7
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|+|++|.. ...... .+..+++|+.|++++ +.+....... ...+++|+.|+++++ .++...-..+ ..+
T Consensus 78 ~~L~L~~n~i-~~~~~~--~~~~l~~L~~L~Ls~-n~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l 146 (452)
T 3zyi_A 78 RYLNLMENNI-QMIQAD--TFRHLHHLEVLQLGR-NSIRQIEVGA-----FNGLASLNTLELFDN-WLTVIPSGAF-EYL 146 (452)
T ss_dssp SEEECCSSCC-CEECTT--TTTTCTTCCEEECCS-SCCCEECTTT-----TTTCTTCCEEECCSS-CCSBCCTTTS-SSC
T ss_pred cEEECcCCcC-ceECHH--HcCCCCCCCEEECCC-CccCCcChhh-----ccCcccCCEEECCCC-cCCccChhhh-ccc
Confidence 3499999873 321111 235889999999999 4565432222 245699999999995 5653221111 258
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|+++++ .++.... .....+++|+.|++++|..++......+ ..+++|+.|++++| .+++.. .+. . ..
T Consensus 147 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~--~~~-~-l~ 218 (452)
T 3zyi_A 147 SKLRELWLRNN-PIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMC-NIKDMP--NLT-P-LV 218 (452)
T ss_dssp TTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTTT-TTCTTCCEEECTTS-CCSSCC--CCT-T-CT
T ss_pred CCCCEEECCCC-CcceeCH-hHHhcCCcccEEeCCCCCCccccChhhc-cCCCCCCEEECCCC-cccccc--ccc-c-cc
Confidence 89999999987 4542211 1234788999999999866654322222 35889999999996 555421 000 0 00
Q ss_pred hhhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356 184 LMSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET 232 (240)
Q Consensus 184 ~l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 232 (240)
.++. -.+.+++.|+.++++.+.+..... ..+ ..+++|+.|+++++
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER--NAF--DGLASLVELNLAHN 276 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT--TTT--TTCTTCCEEECCSS
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH--HHh--cCCCCCCEEECCCC
Confidence 0111 133455566666666665554311 112 45677777777665
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.58 E-value=1e-09 Score=95.90 Aligned_cols=128 Identities=17% Similarity=0.169 Sum_probs=66.4
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.+.|+|++|.. ...... .+..+++|++|++++ +.+...... ....+++|+.|+++++ .++...-..+ ..
T Consensus 58 L~~L~L~~n~i-~~~~~~--~~~~l~~L~~L~L~~-n~l~~~~~~-----~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~ 126 (477)
T 2id5_A 58 LEELELNENIV-SAVEPG--AFNNLFNLRTLGLRS-NRLKLIPLG-----VFTGLSNLTKLDISEN-KIVILLDYMF-QD 126 (477)
T ss_dssp CCEEECTTSCC-CEECTT--TTTTCTTCCEEECCS-SCCCSCCTT-----SSTTCTTCCEEECTTS-CCCEECTTTT-TT
T ss_pred CCEEECCCCcc-CEeChh--hhhCCccCCEEECCC-CcCCccCcc-----cccCCCCCCEEECCCC-ccccCChhHc-cc
Confidence 34488888763 221111 234778888888887 345432211 1234578888888874 4433211111 24
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
+++|++|+++++ .++......+ ..+++|++|++++| .++......+ ..+++|+.|++++
T Consensus 127 l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~ 185 (477)
T 2id5_A 127 LYNLKSLEVGDN-DLVYISHRAF-SGLNSLEQLTLEKC-NLTSIPTEAL-SHLHGLIVLRLRH 185 (477)
T ss_dssp CTTCCEEEECCT-TCCEECTTSS-TTCTTCCEEEEESC-CCSSCCHHHH-TTCTTCCEEEEES
T ss_pred cccCCEEECCCC-ccceeChhhc-cCCCCCCEEECCCC-cCcccChhHh-cccCCCcEEeCCC
Confidence 667777777765 3332111111 24566777777766 4554322222 2355566666555
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.57 E-value=2.4e-08 Score=88.53 Aligned_cols=182 Identities=13% Similarity=0.053 Sum_probs=94.3
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHH-HHHHhcC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI-EIISSTC 103 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~l~~~~ 103 (240)
.|++++|.. .. +.......+++|+.|++++ +.+.+....... +...+++|+.|+++++ .++.... ......+
T Consensus 314 ~L~l~~n~l-~~--ip~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 314 RITVENSKV-FL--VPCSFSQHLKSLEFLDLSE-NLMVEEYLKNSA--CKGAWPSLQTLVLSQN-HLRSMQKTGEILLTL 386 (549)
T ss_dssp EEEEESSCC-CC--CCHHHHHHCTTCCEEECCS-SCCCHHHHHHHT--CTTSSTTCCEEECTTS-CCCCHHHHHHHGGGC
T ss_pred EEEeccCcc-cc--CCHHHHhcCccccEEEccC-Cccccccccchh--hhhccccCcEEEccCC-cccccccchhhhhcC
Confidence 477777763 21 1111112577888888887 456664433211 1245578888888885 6654321 1223457
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHH----------------HHHhCCCCcEEeccCCC
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQL----------------IADNYQELESLNLTRYV 167 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~----------------l~~~~~~L~~L~l~~c~ 167 (240)
++|++|++++| .++. +......+++|+.|++++| .++...-.. +...+++|+.|+++++
T Consensus 387 ~~L~~L~Ls~N-~l~~--lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N- 461 (549)
T 2z81_A 387 KNLTSLDISRN-TFHP--MPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN- 461 (549)
T ss_dssp TTCCEEECTTC-CCCC--CCSCCCCCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-
T ss_pred CCCCEEECCCC-CCcc--CChhhcccccccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-
Confidence 78888888776 4441 1111224456666666666 343210000 0012444555555543
Q ss_pred CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 168 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 168 ~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
.++. +. ....++.|+.++++.+.+.... ...+ ..+++|+.|++.+++-.++
T Consensus 462 ~l~~-------------ip--~~~~l~~L~~L~Ls~N~l~~~~--~~~~--~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 462 KLKT-------------LP--DASLFPVLLVMKISRNQLKSVP--DGIF--DRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CCSS-------------CC--CGGGCTTCCEEECCSSCCCCCC--TTGG--GGCTTCCEEECCSSCBCCC
T ss_pred ccCc-------------CC--CcccCccCCEEecCCCccCCcC--HHHH--hcCcccCEEEecCCCccCC
Confidence 3321 00 0123566777788777766542 1122 5677888888877665443
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.57 E-value=3.8e-10 Score=101.36 Aligned_cols=42 Identities=2% Similarity=-0.018 Sum_probs=23.2
Q ss_pred hcCCccceeecccCCCCCchhHHHHHHHhhccc-ccchhhhhhhhhhh
Q 026356 190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYK-HGKEKHIIETIKTG 236 (240)
Q Consensus 190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~~~ 236 (240)
+.+++.|+.++++++.+..... . + ..++ +|+.|++.++|-..
T Consensus 517 ~~~l~~L~~L~l~~N~l~~~p~-~--~--~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIETSKG-I--L--QHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTTCTTCCEEECTTSCCCCEES-C--G--GGSCTTCCEEECCSCCCCC
T ss_pred ccCCCcCCEEECCCCcCcccCH-h--H--hhhcccCcEEEccCCCccc
Confidence 3455667777777666653311 1 2 3444 47777776655433
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.56 E-value=1e-08 Score=84.76 Aligned_cols=172 Identities=17% Similarity=0.113 Sum_probs=96.3
Q ss_pred CeEEeccCCCCCCh-HHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHH-H-HHHH
Q 026356 23 PKVIDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-G-IEII 99 (240)
Q Consensus 23 ~~~L~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~-~-~~~l 99 (240)
.+.|++++|...+. ..+..+.....++|++|+++++ .+....... ...+++|+.|+++++ .++.. + ...+
T Consensus 123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 195 (312)
T 1wwl_A 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQ-----VRVFPALSTLDLSDN-PELGERGLISAL 195 (312)
T ss_dssp CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTT-----CCCCSSCCEEECCSC-TTCHHHHHHHHS
T ss_pred ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHH-----hccCCCCCEEECCCC-CcCcchHHHHHH
Confidence 34499998874332 1222222112378888888884 454422211 245678888888885 54432 2 2222
Q ss_pred H-hcCCCCCEEEecCCCCCCH--HHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHH
Q 026356 100 S-STCPELKVFSIYWNVRVTD--IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFY 176 (240)
Q Consensus 100 ~-~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~ 176 (240)
. ..+++|++|+++++ .++. .....+...+++|+.|+++++ .+++.........+++|+.|+++++ .++.-
T Consensus 196 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~i---- 268 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQV---- 268 (312)
T ss_dssp CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSC----
T ss_pred HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChh----
Confidence 1 45788888888877 5652 233345567788888888888 5655321111123567888888774 45421
Q ss_pred HHHhChhhhhHH-----------HhcCCccceeecccCCCCCch
Q 026356 177 IWSNNILLMSEF-----------IYHGIRFFQAVQINSSNGGDH 209 (240)
Q Consensus 177 l~~~~~~~l~~l-----------~~~~~~~L~~l~l~~~~~~~~ 209 (240)
...-...++.+ .+..++.|+.++++.+.+.+.
T Consensus 269 -p~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 269 -PKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -CSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTCC
T ss_pred -hhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCCC
Confidence 00000112211 135667789999988877653
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.55 E-value=2.6e-10 Score=102.46 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=15.7
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFA 58 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c 58 (240)
.|++++|..... . ...+..+++|+.|+++++
T Consensus 305 ~L~l~~n~l~~~-~--~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 305 KLVLSANKFENL-C--QISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEECTTCCCSBG-G--GGCGGGCTTCSEEECCSC
T ss_pred EEECccCCcCcC-c--hhhhhccCcCCEEECCCC
Confidence 377777763221 1 112235566666666664
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.55 E-value=1.6e-08 Score=89.11 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=74.9
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHH-HHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
.+++|++|+++++ .+++..... ...+++|+.|+++++ .++.- .+......+++|++|+++++ .+++..-..
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~ 393 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFEN-----CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKG 393 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTT-----CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGC
T ss_pred hCCcccEEEeECC-ccChhhhhh-----hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccc
Confidence 4455555555552 343311111 133455666666553 44431 11111223555666666554 232210001
Q ss_pred HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCC
Q 026356 125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS 204 (240)
Q Consensus 125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~ 204 (240)
....+++|++|++++| .+++.....+ .++|+.|++++| .++. + +. ...+++.|+.++++.+
T Consensus 394 ~~~~l~~L~~L~Ls~N-~l~~~~~~~l---~~~L~~L~Ls~N-~l~~-----i----p~-----~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSN-ILTDTIFRCL---PPRIKVLDLHSN-KIKS-----I----PK-----QVVKLEALQELNVASN 454 (520)
T ss_dssp SCCCCTTCCEEECCSS-CCCGGGGGSC---CTTCCEEECCSS-CCCC-----C----CG-----GGGGCTTCCEEECCSS
T ss_pred hhccCccCCEEECcCC-CCCcchhhhh---cccCCEEECCCC-cccc-----c----ch-----hhhcCCCCCEEECCCC
Confidence 1123455666666655 4443221111 145666666654 3331 0 00 1235667778888777
Q ss_pred CCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 205 NGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
.+..... . .+ ..+++|++|++.+++-.+|
T Consensus 455 ~l~~l~~-~-~~--~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 455 QLKSVPD-G-IF--DRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCCCCCT-T-TT--TTCTTCCEEECCSSCBCCC
T ss_pred cCCccCH-H-Hh--ccCCcccEEECcCCCCccc
Confidence 7664311 1 12 4677888888877665443
No 66
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.54 E-value=1.5e-09 Score=86.91 Aligned_cols=155 Identities=12% Similarity=0.193 Sum_probs=89.4
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+++++..... ..-.+..+++|++|++++ +.+....... ...+++|+.|+++++ .++......+ ..++
T Consensus 39 ~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~-n~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~ 107 (251)
T 3m19_A 39 KLDLQSTGLATL---SDATFRGLTKLTWLNLDY-NQLQTLSAGV-----FDDLTELGTLGLANN-QLASLPLGVF-DHLT 107 (251)
T ss_dssp EEECTTSCCCCC---CTTTTTTCTTCCEEECTT-SCCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTTTT-TTCT
T ss_pred EEEccCCCcCcc---CHhHhcCcccCCEEECCC-CcCCccCHhH-----hccCCcCCEEECCCC-cccccChhHh-cccC
Confidence 488887773221 111234678888888888 4555422111 234578888888884 5553221111 2477
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL 184 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~ 184 (240)
+|++|+++++ .++.... .....+++|+.|+++++ .++......+ ..+++|+.|+++++ .++... +
T Consensus 108 ~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~--------~-- 172 (251)
T 3m19_A 108 QLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIPAGAF-DKLTNLQTLSLSTN-QLQSVP--------H-- 172 (251)
T ss_dssp TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCC--------T--
T ss_pred CCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccCHHHc-CcCcCCCEEECCCC-cCCccC--------H--
Confidence 8888888876 4542111 11235678888888888 6663222112 34678888888884 554210 0
Q ss_pred hhHHHhcCCccceeecccCCCCCc
Q 026356 185 MSEFIYHGIRFFQAVQINSSNGGD 208 (240)
Q Consensus 185 l~~l~~~~~~~L~~l~l~~~~~~~ 208 (240)
-.+.+++.|+.++++.+.+..
T Consensus 173 ---~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 ---GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ---TTTTTCTTCCEEECCSCCBCT
T ss_pred ---HHHhCCCCCCEEEeeCCceeC
Confidence 023556778888887776643
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.54 E-value=2.2e-08 Score=82.11 Aligned_cols=147 Identities=17% Similarity=0.205 Sum_probs=108.0
Q ss_pred hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356 45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
..+++|+.|+++++ .+.+.. . ...+++|+.|+++++ .+++.. . ...+++|+.|+++++ .+++. ..
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~--~-----~~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~--~~ 107 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ--G-----IQYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDEN-KVKDL--SS 107 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT--T-----GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCG--GG
T ss_pred hhcCcccEEEccCC-CcccCh--h-----HhcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCC-cCCCC--hh
Confidence 36788999999995 454421 1 133599999999996 665422 1 346999999999987 56542 22
Q ss_pred HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCC
Q 026356 125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS 204 (240)
Q Consensus 125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~ 204 (240)
...+++|+.|++++| .+++. ..+ ..+++|+.|++++| .+++. . .+.+++.|+.++++.+
T Consensus 108 -l~~l~~L~~L~L~~n-~i~~~--~~l-~~l~~L~~L~l~~n-~l~~~----------~-----~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHN-GISDI--NGL-VHLPQLESLYLGNN-KITDI----------T-----VLSRLTKLDTLSLEDN 166 (291)
T ss_dssp -GTTCTTCCEEECTTS-CCCCC--GGG-GGCTTCCEEECCSS-CCCCC----------G-----GGGGCTTCSEEECCSS
T ss_pred -hccCCCCCEEECCCC-cCCCC--hhh-cCCCCCCEEEccCC-cCCcc----------h-----hhccCCCCCEEEccCC
Confidence 457889999999999 67763 223 35899999999996 66542 0 3466788999999999
Q ss_pred CCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 205 NGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+.+... + ..+++|+.|+++++.
T Consensus 167 ~l~~~~~----l--~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 167 QISDIVP----L--AGLTKLQNLYLSKNH 189 (291)
T ss_dssp CCCCCGG----G--TTCTTCCEEECCSSC
T ss_pred ccccchh----h--cCCCccCEEECCCCc
Confidence 8887632 3 678999999998874
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.54 E-value=1.5e-09 Score=96.23 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=80.7
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.+.|++++|. +...... .+..+++|++|+++++ .+.+..... ...+++|++|+++++ .++...-..+. .
T Consensus 28 L~~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~Ls~n-~i~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~ 96 (549)
T 2z81_A 28 MKSLDLSFNK-ITYIGHG--DLRACANLQVLILKSS-RINTIEGDA-----FYSLGSLEHLDLSDN-HLSSLSSSWFG-P 96 (549)
T ss_dssp CCEEECCSSC-CCEECSS--TTSSCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECTTS-CCCSCCHHHHT-T
T ss_pred ccEEECcCCc-cCccChh--hhhcCCcccEEECCCC-CcCccChhh-----ccccccCCEEECCCC-ccCccCHHHhc-c
Confidence 3458888887 3321111 2347888999999884 555422111 244588999999885 56544333343 4
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 170 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it 170 (240)
+++|++|+++++ .++..++......+++|++|++++|..+++.....+ .++++|+.|+++++ .++
T Consensus 97 l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n-~l~ 161 (549)
T 2z81_A 97 LSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKAL-SLR 161 (549)
T ss_dssp CTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCC
T ss_pred CCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhh-hcccccCeeeccCC-ccc
Confidence 888999999877 444322222234677888888888843443211122 34778888888875 443
No 69
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.52 E-value=7.1e-08 Score=86.94 Aligned_cols=144 Identities=20% Similarity=0.261 Sum_probs=102.0
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|+|++|...... . +..+++|+.|+++++ .+.+.. ....+++|+.|+++++ .+++ +..+ ..+
T Consensus 68 ~~L~Ls~N~l~~~~---~--l~~l~~L~~L~Ls~N-~l~~l~-------~l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l 130 (605)
T 1m9s_A 68 TKLFLNGNKLTDIK---P--LTNLKNLGWLFLDEN-KIKDLS-------SLKDLKKLKSLSLEHN-GISD--INGL-VHL 130 (605)
T ss_dssp CEEECTTSCCCCCG---G--GGGCTTCCEEECCSS-CCCCCT-------TSTTCTTCCEEECTTS-CCCC--CGGG-GGC
T ss_pred CEEEeeCCCCCCCh---h--hccCCCCCEEECcCC-CCCCCh-------hhccCCCCCEEEecCC-CCCC--Cccc-cCC
Confidence 34999999743321 1 458999999999995 565521 1356799999999996 6654 2233 358
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|+.|++++| .+++. .....+++|+.|++++| .+++... ...+++|+.|+|++| .+++. +
T Consensus 131 ~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l---------~- 191 (605)
T 1m9s_A 131 PQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL---------R- 191 (605)
T ss_dssp TTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC---------G-
T ss_pred CccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCC---------h-
Confidence 99999999988 56543 23457899999999999 6765433 346899999999996 66651 1
Q ss_pred hhhHHHhcCCccceeecccCCCCCc
Q 026356 184 LMSEFIYHGIRFFQAVQINSSNGGD 208 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~~~~ 208 (240)
.+..++.|+.|+++.+.+..
T Consensus 192 -----~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 192 -----ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----GGTTCTTCSEEECCSEEEEC
T ss_pred -----HHccCCCCCEEEccCCcCcC
Confidence 23557778888877665544
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.52 E-value=1.3e-10 Score=103.52 Aligned_cols=91 Identities=12% Similarity=0.114 Sum_probs=46.9
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 207 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~ 207 (240)
.+++|+.|++++| .+++..+......+++|+.|++++| .+++.. +. .+.+++.|+.++++.+.+.
T Consensus 443 ~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~--------~~-----~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 443 GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLS--------PT-----AFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC--------TT-----TTTTCTTCCEEECCSSCCS
T ss_pred cCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCC--------hh-----hhhcccCCCEEeCCCCcCC
Confidence 4455555555555 3432111111123555666666654 333210 00 2355677778888777666
Q ss_pred chhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 208 DHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 208 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
+.. ...+ ..+++|++|++.+++-.++
T Consensus 508 ~~~--~~~~--~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 508 SVP--DGIF--DRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCC--TTTT--TTCTTCCEEECCSSCBCCC
T ss_pred CCC--HHHh--hcccCCcEEEecCCcccCC
Confidence 541 1122 4677888888877665443
No 71
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.50 E-value=1.1e-08 Score=82.75 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=76.9
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
.+++|+.|+++++ .+.+.. . ...+++|+.|+++++ .+++..- ...+++|++|+++++ .+++- ..+
T Consensus 39 ~l~~L~~L~l~~n-~i~~l~--~-----l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l--~~~ 103 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSLA--G-----MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNL--NGI 103 (263)
T ss_dssp HHTTCSEEECTTS-CCCCCT--T-----GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCC--TTC
T ss_pred hcCcCcEEECcCC-Ccccch--H-----HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCc--Ccc
Confidence 5566777777763 344321 1 123467777777764 4443221 234667777777765 33321 111
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 205 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~ 205 (240)
. . ++|+.|++++| .+++. ..+ ..+++|+.|+++++ .+++. . .+.+++.|+.++++.+.
T Consensus 104 ~-~-~~L~~L~L~~N-~l~~~--~~l-~~l~~L~~L~Ls~N-~i~~~-------------~--~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 104 P-S-ACLSRLFLDNN-ELRDT--DSL-IHLKNLEILSIRNN-KLKSI-------------V--MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp C-C-SSCCEEECCSS-CCSBS--GGG-TTCTTCCEEECTTS-CCCBC-------------G--GGGGCTTCCEEECTTSC
T ss_pred c-c-CcccEEEccCC-ccCCC--hhh-cCcccccEEECCCC-cCCCC-------------h--HHccCCCCCEEECCCCc
Confidence 1 1 56777777777 55542 112 24666777777764 45431 0 12445666666666666
Q ss_pred CCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 206 GGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
+.+. ..+ ..+++|+.|++++++
T Consensus 162 i~~~----~~l--~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 162 ITNT----GGL--TRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCBC----TTS--TTCCCCCEEEEEEEE
T ss_pred Ccch----HHh--ccCCCCCEEeCCCCc
Confidence 6554 112 456666666666554
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.49 E-value=1.1e-09 Score=91.33 Aligned_cols=176 Identities=15% Similarity=0.154 Sum_probs=108.6
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+++++.... +.. .+.++++|++|+++++ .+.. +... ...+++|++|+++++ .++. +..-...++
T Consensus 85 ~L~L~~n~l~~---lp~-~l~~l~~L~~L~L~~n-~l~~--lp~~----~~~l~~L~~L~Ls~n-~l~~--lp~~l~~l~ 150 (328)
T 4fcg_A 85 ALELRSVPLPQ---FPD-QAFRLSHLQHMTIDAA-GLME--LPDT----MQQFAGLETLTLARN-PLRA--LPASIASLN 150 (328)
T ss_dssp EEEEESSCCSS---CCS-CGGGGTTCSEEEEESS-CCCC--CCSC----GGGGTTCSEEEEESC-CCCC--CCGGGGGCT
T ss_pred EEEccCCCchh---cCh-hhhhCCCCCEEECCCC-Cccc--hhHH----HhccCCCCEEECCCC-cccc--CcHHHhcCc
Confidence 38888877321 111 1236888999999884 4552 1110 133488999999885 5551 111123588
Q ss_pred CCCEEEecCCCCCCHHHHHHH--------HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHH
Q 026356 105 ELKVFSIYWNVRVTDIGIQHL--------VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFY 176 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l--------~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~ 176 (240)
+|++|++++|..++... ..+ ...+++|+.|++++| .++. +..-...+++|+.|++++| .++.
T Consensus 151 ~L~~L~L~~n~~~~~~p-~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~N-~l~~----- 220 (328)
T 4fcg_A 151 RLRELSIRACPELTELP-EPLASTDASGEHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKSLKIRNS-PLSA----- 220 (328)
T ss_dssp TCCEEEEEEETTCCCCC-SCSEEEC-CCCEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEEEESS-CCCC-----
T ss_pred CCCEEECCCCCCccccC-hhHhhccchhhhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCEEEccCC-CCCc-----
Confidence 89999998864332110 001 124788999999988 6662 1111245889999999985 5542
Q ss_pred HHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 177 IWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 177 l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
-+. .+.+++.|+.++++.+.+..... ..+ ..+++|++|++.+|...+.
T Consensus 221 ----l~~-----~l~~l~~L~~L~Ls~n~~~~~~p--~~~--~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 221 ----LGP-----AIHHLPKLEELDLRGCTALRNYP--PIF--GGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp ----CCG-----GGGGCTTCCEEECTTCTTCCBCC--CCT--TCCCCCCEEECTTCTTCCB
T ss_pred ----Cch-----hhccCCCCCEEECcCCcchhhhH--HHh--cCCCCCCEEECCCCCchhh
Confidence 111 24567889999998876665421 122 5789999999999876554
No 73
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.49 E-value=8.3e-10 Score=99.15 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=47.3
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 207 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~ 207 (240)
.+++|++|++++| .+++..+......+++|+.|++++| .++.. .+ -.+.+++.|+.++++.+.+.
T Consensus 446 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~--------~~-----~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 446 GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQI--------SW-----GVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEE--------CT-----TTTTTCTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCcc--------Ch-----hhhcccccCCEEECCCCcCC
Confidence 3455555555555 3433211111123455566666554 33320 00 13466778888888888777
Q ss_pred chhHHHHHHHhhcccccchhhhhhhh
Q 026356 208 DHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 208 ~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
+.. ...+ ..+++|++|++++|.
T Consensus 511 ~~~--~~~~--~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 511 FLD--SSHY--NQLYSLSTLDCSFNR 532 (606)
T ss_dssp CEE--GGGT--TTCTTCCEEECTTSC
T ss_pred CcC--HHHc--cCCCcCCEEECCCCc
Confidence 652 1122 567888888888775
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.48 E-value=1.3e-08 Score=84.38 Aligned_cols=124 Identities=10% Similarity=0.054 Sum_probs=61.4
Q ss_pred CCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCC
Q 026356 77 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ 156 (240)
Q Consensus 77 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~ 156 (240)
+++|+.|+++++ .++... ..++|++|+++++ .++... ...+++|+.|+++++ .++......+ ..++
T Consensus 79 l~~L~~L~Ls~n-~l~~l~------~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N-~l~~~~~~~~-~~l~ 144 (317)
T 3o53_A 79 LSTLRTLDLNNN-YVQELL------VGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANN-KITMLRDLDE-GCRS 144 (317)
T ss_dssp CTTCCEEECCSS-EEEEEE------ECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSS-CCCSGGGBCT-GGGS
T ss_pred cCCCCEEECcCC-cccccc------CCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCC-CCCCccchhh-hccC
Confidence 355555555553 333211 2355566666554 332211 123456666666666 4543211111 2356
Q ss_pred CCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 157 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 157 ~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
+|+.|+++++ .+++..... ...+++.|+.++++.+.+..... ...+++|++|+++++.
T Consensus 145 ~L~~L~Ls~N-~l~~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 145 RVQYLDLKLN-EIDTVNFAE------------LAASSDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNK 202 (317)
T ss_dssp SEEEEECTTS-CCCEEEGGG------------GGGGTTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCcccHHH------------HhhccCcCCEEECCCCcCccccc------ccccccCCEEECCCCc
Confidence 6677777664 444311100 11345667777777776665411 1236777777776653
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.47 E-value=9.7e-10 Score=93.59 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=51.6
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
.+++|+.|+++++ .+.+..... ...+++|++|+++++ .++......+ ..+++|++|+++++ .++.-. ..+
T Consensus 67 ~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~~ 136 (390)
T 3o6n_A 67 SFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RGI 136 (390)
T ss_dssp HCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTT
T ss_pred ccccCcEEECCCC-cccccChhh-----ccCCCCcCEEECCCC-CCCcCCHHHh-cCCCCCCEEECCCC-ccCcCC-HHH
Confidence 5667777777763 344322111 133466677777664 4433211111 23566666666655 333111 011
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
...+++|++|+++++ .++......+ ..+++|+.|+++++
T Consensus 137 ~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNN-NLERIEDDTF-QATTSLQNLQLSSN 175 (390)
T ss_dssp TTTCTTCCEEECCSS-CCCBCCTTTT-SSCTTCCEEECCSS
T ss_pred hcCCCCCcEEECCCC-ccCccChhhc-cCCCCCCEEECCCC
Confidence 234556666666666 4443211111 23556666666653
No 76
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.47 E-value=1.7e-09 Score=100.18 Aligned_cols=133 Identities=19% Similarity=0.211 Sum_probs=67.2
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHH--HH
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI--IS 100 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--l~ 100 (240)
.+.|+|++|...+. ......+.++++|++|+++++ .+....... ....+++|++|+++++ .++...... ..
T Consensus 102 L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~----~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 102 LTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSN-TLDFPGKVS----GGLKLNSLEVLDLSAN-SISGANVVGWVLS 174 (768)
T ss_dssp CCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSS-EEECCSSCC----SCCCCTTCSEEECCSS-CCEEETHHHHHHT
T ss_pred CCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCC-ccCCcCCHH----HhccCCCCCEEECCCC-ccCCcCChhhhhh
Confidence 33488887763321 111002347778888888874 232111000 0134577888888875 554332222 12
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356 101 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 170 (240)
Q Consensus 101 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it 170 (240)
..+++|++|+++++. +++.. .+ ..+++|++|++++| .++...- . ...+++|+.|++++| .++
T Consensus 175 ~~l~~L~~L~Ls~n~-l~~~~--~~-~~l~~L~~L~Ls~n-~l~~~~~-~-l~~l~~L~~L~Ls~n-~l~ 236 (768)
T 3rgz_A 175 DGCGELKHLAISGNK-ISGDV--DV-SRCVNLEFLDVSSN-NFSTGIP-F-LGDCSALQHLDISGN-KLS 236 (768)
T ss_dssp TCCTTCCEEECCSSE-EESCC--BC-TTCTTCCEEECCSS-CCCSCCC-B-CTTCCSCCEEECCSS-CCC
T ss_pred ccCCCCCEEECCCCc-ccccC--Cc-ccCCcCCEEECcCC-cCCCCCc-c-cccCCCCCEEECcCC-cCC
Confidence 356777777777652 22110 00 35566777777766 4432111 1 234666777777664 444
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.46 E-value=2.3e-09 Score=94.20 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=63.2
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHH------
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE------ 97 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~------ 97 (240)
+.|+|++|.... +..-.+..+++|+.|+++++ .+++..- ...+++|+.|+++++ .+++....
T Consensus 37 ~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-------l~~l~~L~~L~Ls~N-~l~~l~~~~~L~~L 104 (487)
T 3oja_A 37 KELDLSGNPLSQ---ISAADLAPFTKLELLNLSSN-VLYETLD-------LESLSTLRTLDLNNN-YVQELLVGPSIETL 104 (487)
T ss_dssp CEEECCSSCCCC---CCGGGGTTCTTCCEEECTTS-CCEEEEE-------CTTCTTCCEEECCSS-EEEEEEECTTCCEE
T ss_pred cEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCC-CCCCCcc-------cccCCCCCEEEecCC-cCCCCCCCCCcCEE
Confidence 348888887332 11112347788888888884 4543211 234577777777775 44321100
Q ss_pred ---------HHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 98 ---------IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 98 ---------~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
.....+++|+.|+++++ .++...-..+ ..+++|+.|+++++ .++......+...+++|+.|++++|
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred ECcCCcCCCCCccccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC
Confidence 00012344455555544 2332111111 23456666666666 5554333333334566666666664
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.45 E-value=1.9e-08 Score=83.60 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=48.8
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|++++|.... . ....+..+++|++|+++++ .+....... ...+++|++|+++++ .++.-.. ...+
T Consensus 56 ~L~L~~n~i~~-~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~l~~----~~~~ 121 (330)
T 1xku_A 56 LLDLQNNKITE-I--KDGDFKNLKNLHTLILINN-KISKISPGA-----FAPLVKLERLYLSKN-QLKELPE----KMPK 121 (330)
T ss_dssp EEECCSSCCCC-B--CTTTTTTCTTCCEEECCSS-CCCCBCTTT-----TTTCTTCCEEECCSS-CCSBCCS----SCCT
T ss_pred EEECCCCcCCE-e--ChhhhccCCCCCEEECCCC-cCCeeCHHH-----hcCCCCCCEEECCCC-cCCccCh----hhcc
Confidence 48888876322 1 1111346778888888874 454321111 134577777777774 4432100 1124
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCC
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC 140 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 140 (240)
+|++|+++++ .++..... ....+++|+.|+++++
T Consensus 122 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 122 TLQELRVHEN-EITKVRKS-VFNGLNQMIVVELGTN 155 (330)
T ss_dssp TCCEEECCSS-CCCBBCHH-HHTTCTTCCEEECCSS
T ss_pred cccEEECCCC-cccccCHh-HhcCCccccEEECCCC
Confidence 5666666554 33322111 1234455555555555
No 79
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.45 E-value=3.7e-09 Score=97.87 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=54.4
Q ss_pred CCCCCEEEecCCCCCCHHHHHH--HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHh
Q 026356 103 CPELKVFSIYWNVRVTDIGIQH--LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN 180 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~--l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~ 180 (240)
+++|++|+++++ .+++..... ....+++|++|++++| .+++..- . ..+++|+.|++++| .++..
T Consensus 150 l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~-~~l~~L~~L~Ls~n-~l~~~-------- 215 (768)
T 3rgz_A 150 LNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGN-KISGDVD--V-SRCVNLEFLDVSSN-NFSTG-------- 215 (768)
T ss_dssp CTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSS-EEESCCB--C-TTCTTCCEEECCSS-CCCSC--------
T ss_pred CCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCC-cccccCC--c-ccCCcCCEEECcCC-cCCCC--------
Confidence 455555555544 333221111 1234555555555555 3332110 0 23556666666664 22210
Q ss_pred ChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356 181 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 235 (240)
Q Consensus 181 ~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 235 (240)
+. .+..++.|+.++++.+.+... +...+ ..+++|++|++++|...
T Consensus 216 ----~~--~l~~l~~L~~L~Ls~n~l~~~--~~~~l--~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 216 ----IP--FLGDCSALQHLDISGNKLSGD--FSRAI--STCTELKLLNISSNQFV 260 (768)
T ss_dssp ----CC--BCTTCCSCCEEECCSSCCCSC--HHHHT--TTCSSCCEEECCSSCCE
T ss_pred ----Cc--ccccCCCCCEEECcCCcCCCc--ccHHH--hcCCCCCEEECCCCccc
Confidence 00 135567777888877777654 22233 56777777777776543
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.44 E-value=5.1e-09 Score=95.31 Aligned_cols=127 Identities=23% Similarity=0.314 Sum_probs=59.8
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+++++.... +....+..+++|++|+++++ .+....-..+.. +++|+.|+++++ .++...-..++ .++
T Consensus 29 ~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~l~~~~~~-~l~ 97 (680)
T 1ziw_A 29 VLNLTHNQLRR---LPAANFTRYSQLTSLDVGFN-TISKLEPELCQK-----LPMLKVLNLQHN-ELSQLSDKTFA-FCT 97 (680)
T ss_dssp EEECCSSCCCC---CCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHH-----CTTCCEEECCSS-CCCCCCTTTTT-TCT
T ss_pred EEECCCCCCCC---cCHHHHhCCCcCcEEECCCC-ccCccCHHHHhc-----ccCcCEEECCCC-ccCccChhhhc-cCC
Confidence 37777776322 11112346677777777773 444322222221 267777777764 44321111111 366
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
+|++|+++++ .++...... ...+++|++|++++| .++......+ .++++|+.|+++++
T Consensus 98 ~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 98 NLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNN 155 (680)
T ss_dssp TCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSS
T ss_pred CCCEEECCCC-ccCccChhH-ccccCCCCEEECCCC-cccccCchhh-cccccCCEEEccCC
Confidence 6677766655 232111001 134556666666666 3433211111 23555666666553
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.43 E-value=4.6e-09 Score=85.01 Aligned_cols=174 Identities=12% Similarity=0.129 Sum_probs=111.6
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.++++++.... +...-.+++++|+++++ .+...... ....+++|++|+++++ .++...- .+...+
T Consensus 19 ~~l~~~~~~l~~------ip~~~~~~l~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~l~~n-~l~~i~~-~~~~~l 84 (270)
T 2o6q_A 19 NSVDCSSKKLTA------IPSNIPADTKKLDLQSN-KLSSLPSK-----AFHRLTKLRLLYLNDN-KLQTLPA-GIFKEL 84 (270)
T ss_dssp TEEECTTSCCSS------CCSCCCTTCSEEECCSS-CCSCCCTT-----SSSSCTTCCEEECCSS-CCSCCCT-TTTSSC
T ss_pred CEEEccCCCCCc------cCCCCCCCCCEEECcCC-CCCeeCHH-----HhcCCCCCCEEECCCC-ccCeeCh-hhhcCC
Confidence 347777765321 21112357999999994 56543221 1245699999999995 5553111 112358
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|+++++ .++.... .....+++|++|+++++ .++......+ ..+++|+.|+++++ .++..
T Consensus 85 ~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~----------- 148 (270)
T 2o6q_A 85 KNLETLWVTDN-KLQALPI-GVFDQLVNLAELRLDRN-QLKSLPPRVF-DSLTKLTYLSLGYN-ELQSL----------- 148 (270)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCC-----------
T ss_pred CCCCEEECCCC-cCCcCCH-hHcccccCCCEEECCCC-ccCeeCHHHh-CcCcCCCEEECCCC-cCCcc-----------
Confidence 99999999987 4543221 12346789999999999 6664332222 35889999999996 55431
Q ss_pred hhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 184 LMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
..-.+.+++.|+.++++.+.+..... ..+ ..+++|+.|+++++.
T Consensus 149 --~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 149 --PKGVFDKLTSLKELRLYNNQLKRVPE--GAF--DKLTELKTLKLDNNQ 192 (270)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred --CHhHccCCcccceeEecCCcCcEeCh--hHh--ccCCCcCEEECCCCc
Confidence 00124677889999998887765421 112 567899999998774
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.42 E-value=1.1e-09 Score=87.01 Aligned_cols=188 Identities=9% Similarity=0.121 Sum_probs=82.7
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+++++.... +..-.+..+++|+.|+++++..++...-.. ...+++|++|++++|+.++......+ ..++
T Consensus 35 ~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~ 105 (239)
T 2xwt_C 35 TLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLESHS-----FYNLSKVTHIEIRNTRNLTYIDPDAL-KELP 105 (239)
T ss_dssp EEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEECTTT-----EESCTTCCEEEEEEETTCCEECTTSE-ECCT
T ss_pred EEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeCHhH-----cCCCcCCcEEECCCCCCeeEcCHHHh-CCCC
Confidence 37777665221 111112356777777777642243221111 13346777777776444442111111 2366
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCC---EEeccCCCCCCHHHHHHHHHhCCCCc-EEeccCCCCCCHHHHHHHHH-
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHII---DLNLSGCKNLLDKSLQLIADNYQELE-SLNLTRYVNMILLGLFYIWS- 179 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~---~L~l~~c~~ltd~~l~~l~~~~~~L~-~L~l~~c~~it~~~~~~l~~- 179 (240)
+|++|+++++ .++. +.. ...+++|+ .|+++++..++......+ ..+++|+ .|+++++ .++.-....+..
T Consensus 106 ~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n-~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 106 LLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNN-GFTSVQGYAFNGT 179 (239)
T ss_dssp TCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSC-CCCEECTTTTTTC
T ss_pred CCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCC-CCcccCHhhcCCC
Confidence 6777777655 2322 111 22444555 666666533432111111 2355566 6666553 333210000000
Q ss_pred --------hC--hhhhhHHHhcCC-ccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 180 --------NN--ILLMSEFIYHGI-RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 180 --------~~--~~~l~~l~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
++ ...+..-.+.++ +.|+.++++.+.+.... ...+++|+.|.+++++.
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~-------~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-------SKGLEHLKELIARNTWT 238 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC-------CTTCTTCSEEECTTC--
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC-------hhHhccCceeeccCccC
Confidence 00 000101123445 66667777666655431 12456777777766653
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.41 E-value=1.8e-09 Score=97.17 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=35.9
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
.+++|+.|+++++ .+.+..... ...+++|+.|+++++ .++......+ ..+++|+.|+++++ .++... ..+
T Consensus 73 ~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~~ 142 (597)
T 3oja_B 73 SFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RGI 142 (597)
T ss_dssp HCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTT
T ss_pred cCCCCcEEECCCC-CCCCCChHH-----hcCCCCCCEEECCCC-cCCCCCHHHH-cCCCCCCEEEeeCC-CCCCCC-HHH
Confidence 5566666666663 343321111 123455666666554 3332111111 13555555555554 232110 011
Q ss_pred HHcCCcCCEEeccCC
Q 026356 126 VKNCKHIIDLNLSGC 140 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c 140 (240)
...+++|+.|++++|
T Consensus 143 ~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 143 FHNTPKLTTLSMSNN 157 (597)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hccCCCCCEEEeeCC
Confidence 123445555555555
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.41 E-value=7e-09 Score=93.32 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=9.7
Q ss_pred CccceeecccCCCCCc
Q 026356 193 IRFFQAVQINSSNGGD 208 (240)
Q Consensus 193 ~~~L~~l~l~~~~~~~ 208 (240)
++.|+.++++.+.+..
T Consensus 300 l~~L~~L~Ls~N~l~~ 315 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLH 315 (597)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred CCCCcEEECCCCCCCc
Confidence 5566666666665553
No 85
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.41 E-value=1e-08 Score=85.32 Aligned_cols=127 Identities=14% Similarity=0.169 Sum_probs=63.6
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|++++|... ...... +..+++|+.|+++++ .+...+...- ....+++|+.|+++++ .++.-.. ...
T Consensus 124 ~~L~l~~n~l~-~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~---~~~~l~~L~~L~l~~n-~l~~l~~----~~~ 191 (330)
T 1xku_A 124 QELRVHENEIT-KVRKSV--FNGLNQMIVVELGTN-PLKSSGIENG---AFQGMKKLSYIRIADT-NITTIPQ----GLP 191 (330)
T ss_dssp CEEECCSSCCC-BBCHHH--HTTCTTCCEEECCSS-CCCGGGBCTT---GGGGCTTCCEEECCSS-CCCSCCS----SCC
T ss_pred cEEECCCCccc-ccCHhH--hcCCccccEEECCCC-cCCccCcChh---hccCCCCcCEEECCCC-ccccCCc----ccc
Confidence 34888877632 211122 236788888888873 4543211100 0123467777777774 4432100 112
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
++|++|+++++ .+++.....+ ..+++|+.|+++++ .+++.....+ ..+++|+.|++++|
T Consensus 192 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N 250 (330)
T 1xku_A 192 PSLTELHLDGN-KITKVDAASL-KGLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNN 250 (330)
T ss_dssp TTCSEEECTTS-CCCEECTGGG-TTCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSS
T ss_pred ccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCC
Confidence 56677777665 3433221112 34566666766666 4543222122 23566666666664
No 86
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.40 E-value=1.1e-07 Score=82.90 Aligned_cols=169 Identities=12% Similarity=0.113 Sum_probs=105.5
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|+++++...+- . .+..+++|++|+++++ .+++.. ...+++|++|+++++ .++... + ..+
T Consensus 45 ~~L~Ls~n~l~~~---~--~l~~l~~L~~L~Ls~n-~l~~~~--------~~~l~~L~~L~Ls~N-~l~~~~---~-~~l 105 (457)
T 3bz5_A 45 TSLDCHNSSITDM---T--GIEKLTGLTKLICTSN-NITTLD--------LSQNTNLTYLACDSN-KLTNLD---V-TPL 105 (457)
T ss_dssp CEEECCSSCCCCC---T--TGGGCTTCSEEECCSS-CCSCCC--------CTTCTTCSEEECCSS-CCSCCC---C-TTC
T ss_pred CEEEccCCCcccC---h--hhcccCCCCEEEccCC-cCCeEc--------cccCCCCCEEECcCC-CCceee---c-CCC
Confidence 4499998874332 2 2457899999999984 566531 245688999999985 565532 2 358
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|+++++ .++... ...+++|+.|+++++ .++... ...+++|+.|++++|..++...+. ..+
T Consensus 106 ~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~-----~l~ 170 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLDVT-----PQT 170 (457)
T ss_dssp TTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCCCT-----TCT
T ss_pred CcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccccc-----cCC
Confidence 88999999887 454421 346788888888888 666532 234777888888876444432110 000
Q ss_pred hhh----------HHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 184 LMS----------EFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 184 ~l~----------~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.++ .+.+.+++.|+.++++.+.+... . + ..+++|+.|+++++.
T Consensus 171 ~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-~----l--~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 171 QLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-D----L--NQNIQLTFLDCSSNK 223 (457)
T ss_dssp TCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-C----C--TTCTTCSEEECCSSC
T ss_pred cCCEEECCCCccceeccccCCCCCEEECcCCcCCee-c----c--ccCCCCCEEECcCCc
Confidence 011 12234556677777776666654 1 2 466777777776654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.40 E-value=1.4e-08 Score=81.28 Aligned_cols=157 Identities=11% Similarity=0.147 Sum_probs=84.9
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
++++.|++++ +.+....... ...+++|++|+++++ .++...-..+ ..+++|++|+++++ .++.... ....
T Consensus 35 ~~l~~L~L~~-n~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQS-TGLATLSDAT-----FRGLTKLTWLNLDYN-QLQTLSAGVF-DDLTELGTLGLANN-QLASLPL-GVFD 104 (251)
T ss_dssp TTCCEEECTT-SCCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCCCCT-TTTT
T ss_pred CCCCEEEccC-CCcCccCHhH-----hcCcccCCEEECCCC-cCCccCHhHh-ccCCcCCEEECCCC-cccccCh-hHhc
Confidence 4677777777 3444322211 234577777777774 5543221111 24677777777766 4442111 1123
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 207 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~ 207 (240)
.+++|+.|+++++ .++..... ....+++|+.|+++++ .++.. ..-.+.+++.|+.++++.+.+.
T Consensus 105 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 105 HLTQLDKLYLGGN-QLKSLPSG-VFDRLTKLKELRLNTN-QLQSI-------------PAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCC-------------CTTTTTTCTTCCEEECCSSCCS
T ss_pred ccCCCCEEEcCCC-cCCCcChh-HhccCCcccEEECcCC-cCCcc-------------CHHHcCcCcCCCEEECCCCcCC
Confidence 5677777777777 56532111 1134677777777774 45421 0002345667777777777666
Q ss_pred chhHHHHHHHhhcccccchhhhhhhhh
Q 026356 208 DHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 208 ~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
.... ..+ ..+++|+.|++.+++-
T Consensus 169 ~~~~--~~~--~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 SVPH--GAF--DRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCT--TTT--TTCTTCCEEECCSCCB
T ss_pred ccCH--HHH--hCCCCCCEEEeeCCce
Confidence 4421 122 4567777777766554
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.40 E-value=2.9e-08 Score=77.06 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=15.8
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
.+++|+.|+++++ .++..... ....+++|+.|++++
T Consensus 98 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 98 KLTQLKELALNTN-QLQSLPDG-VFDKLTQLKDLRLYQ 133 (208)
T ss_dssp TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCS
T ss_pred CccCCCEEEcCCC-cCcccCHh-HhccCCcCCEEECCC
Confidence 3455555555555 34321111 112345555555555
No 89
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.38 E-value=5.7e-08 Score=73.44 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=85.7
Q ss_pred hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356 45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
..+++|+.|+++++ .++.. ..+.. ..++|+.|+++++ .+++- ..+ ..+++|++|+++++ .++... ..
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i--~~~~~----~~~~L~~L~Ls~N-~l~~~--~~l-~~l~~L~~L~Ls~N-~l~~~~-~~ 82 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVI--ENLGA----TLDQFDAIDFSDN-EIRKL--DGF-PLLRRLKTLLVNNN-RICRIG-EG 82 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSC--CCGGG----GTTCCSEEECCSS-CCCEE--CCC-CCCSSCCEEECCSS-CCCEEC-SC
T ss_pred CCcCCceEEEeeCC-CCchh--HHhhh----cCCCCCEEECCCC-CCCcc--ccc-ccCCCCCEEECCCC-cccccC-cc
Confidence 36778999999984 56532 22222 2258999999995 66652 222 24788899999887 454321 12
Q ss_pred HHHcCCcCCEEeccCCCCCCHHHH-HHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccC
Q 026356 125 LVKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS 203 (240)
Q Consensus 125 l~~~~~~L~~L~l~~c~~ltd~~l-~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~ 203 (240)
+...+++|+.|+++++ .+++-.. ..+ ..+++|+.|+++++ .+++.. . .+...+..++.|+.++++.
T Consensus 83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N-~i~~~~---------~-~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 83 LDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN-PVTNKK---------H-YRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS-GGGGST---------T-HHHHHHHHCTTCSEETTEE
T ss_pred hhhcCCCCCEEECCCC-cCCcchhhHhh-hcCCCCCEEEecCC-CCCCcH---------h-HHHHHHHHCCccceeCCCc
Confidence 2356788999999988 6764321 222 35888999999885 443310 0 1111345577788888876
Q ss_pred CCCCch
Q 026356 204 SNGGDH 209 (240)
Q Consensus 204 ~~~~~~ 209 (240)
+...+.
T Consensus 150 n~~~~~ 155 (176)
T 1a9n_A 150 VKLKER 155 (176)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 665443
No 90
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.38 E-value=2.5e-10 Score=94.70 Aligned_cols=187 Identities=9% Similarity=0.078 Sum_probs=107.5
Q ss_pred EeccCCCCCCh-HHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 26 IDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 26 L~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
|+++++...+. .... .+..+++|++|++++++.+.+..-..+ ..+++|++|+++++ .++...-..+. .++
T Consensus 55 L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n-~l~~~~p~~~~-~l~ 125 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAI-----AKLTQLHYLYITHT-NVSGAIPDFLS-QIK 125 (313)
T ss_dssp EEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGG-----GGCTTCSEEEEEEE-CCEEECCGGGG-GCT
T ss_pred EECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCcccccCChhH-----hcCCCCCEEECcCC-eeCCcCCHHHh-CCC
Confidence 88988874320 1112 234889999999985344543222222 34588999999885 55422222222 488
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCC-CCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~-~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
+|++|+++++ .++.... .....+++|++|+++++ .++......+. .++ +|+.|+++++ .++...-..+..- .
T Consensus 126 ~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~~~~~~~~l--~ 198 (313)
T 1ogq_A 126 TLVTLDFSYN-ALSGTLP-PSISSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRN-RLTGKIPPTFANL--N 198 (313)
T ss_dssp TCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSS-EEEEECCGGGGGC--C
T ss_pred CCCEEeCCCC-ccCCcCC-hHHhcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCC-eeeccCChHHhCC--c
Confidence 8999999877 3432111 11246788999999988 66532222232 344 7888888875 4432111111100 0
Q ss_pred hhhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 184 LMSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 184 ~l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
++. -.+.+++.|+.++++.+.+...... + ..+++|++|+++++.-
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~--~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---V--GLSKNLNGLDLRNNRI 256 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---C--CCCTTCCEEECCSSCC
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---c--cccCCCCEEECcCCcc
Confidence 111 1345667788888887777644221 2 5678888888887754
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.38 E-value=1.8e-08 Score=88.56 Aligned_cols=127 Identities=10% Similarity=0.082 Sum_probs=61.7
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 157 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~ 157 (240)
++|+.|+++++ .++......+...+++|+.|++++| .++... .. ..+++|+.|++++| .++..... ...+++
T Consensus 144 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~--~~-~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~ 215 (487)
T 3oja_A 144 SRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDVK--GQ-VVFAKLKTLDLSSN-KLAFMGPE--FQSAAG 215 (487)
T ss_dssp SSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEE--CC-CCCTTCCEEECCSS-CCCEECGG--GGGGTT
T ss_pred CCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-cccccc--cc-ccCCCCCEEECCCC-CCCCCCHh--HcCCCC
Confidence 45555555553 4443322333333555555555554 232210 00 12455555555555 44431111 123455
Q ss_pred CcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhh
Q 026356 158 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHII 230 (240)
Q Consensus 158 L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 230 (240)
|+.|+++++ .++. + +. .+..++.|+.++++.+.+... .+...+ ..++.|+.+.+.
T Consensus 216 L~~L~Ls~N-~l~~-----l----p~-----~l~~l~~L~~L~l~~N~l~c~-~~~~~~--~~l~~L~~l~~~ 270 (487)
T 3oja_A 216 VTWISLRNN-KLVL-----I----EK-----ALRFSQNLEHFDLRGNGFHCG-TLRDFF--SKNQRVQTVAKQ 270 (487)
T ss_dssp CSEEECTTS-CCCE-----E----CT-----TCCCCTTCCEEECTTCCBCHH-HHHHHH--TTCHHHHHHHHH
T ss_pred ccEEEecCC-cCcc-----c----ch-----hhccCCCCCEEEcCCCCCcCc-chHHHH--HhCCCCcEEecc
Confidence 666666553 3331 0 10 234556777888877777643 344445 567777777775
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.37 E-value=1.5e-07 Score=82.94 Aligned_cols=161 Identities=11% Similarity=0.117 Sum_probs=104.6
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHH-HHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDR-HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~-~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
+.|++++|...+ ..... +..+++|+.|+++++ .+++. .+... ...+++|+.|+++++ .++...-......
T Consensus 327 ~~L~Ls~n~l~~-~~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~----~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 327 LHLDFSNNLLTD-TVFEN--CGHLTELETLILQMN-QLKELSKIAEM----TTQMKSLQQLDISQN-SVSYDEKKGDCSW 397 (520)
T ss_dssp CEEECCSSCCCT-TTTTT--CCCCSSCCEEECCSS-CCCBHHHHHHH----HTTCTTCCEEECCSS-CCBCCGGGCSCCC
T ss_pred cEEEeECCccCh-hhhhh--hccCCCCCEEEccCC-ccCccccchHH----HhhCCCCCEEECCCC-cCCcccccchhcc
Confidence 349999987432 22222 348899999999994 57652 22211 245699999999996 6554211111235
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcC-CcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNC-KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN 181 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~ 181 (240)
+++|++|++++| .+++... ... ++|+.|++++| .++.- -..+. .+++|+.|++++| .++. +...
T Consensus 398 l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N-~l~~i-p~~~~-~l~~L~~L~L~~N-~l~~-----l~~~- 462 (520)
T 2z7x_B 398 TKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSN-KIKSI-PKQVV-KLEALQELNVASN-QLKS-----VPDG- 462 (520)
T ss_dssp CTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSS-CCCC-----CCTT-
T ss_pred CccCCEEECcCC-CCCcchh----hhhcccCCEEECCCC-ccccc-chhhh-cCCCCCEEECCCC-cCCc-----cCHH-
Confidence 789999999988 5654322 233 69999999999 78721 11233 6899999999996 6653 1100
Q ss_pred hhhhhHHHhcCCccceeecccCCCCCchhHHHHH
Q 026356 182 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYI 215 (240)
Q Consensus 182 ~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~ 215 (240)
.+..++.|+.++++.+.+........+
T Consensus 463 -------~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 463 -------IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp -------TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred -------HhccCCcccEEECcCCCCcccCCchHH
Confidence 246678899999988887754343333
No 93
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.34 E-value=3.8e-09 Score=86.65 Aligned_cols=152 Identities=19% Similarity=0.307 Sum_probs=84.4
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|++++|.... .... .+..+++|+.|++++ +.++.... ...+++|+.|+++++ .++. +......+
T Consensus 34 ~~L~L~~N~l~~-~~~~--~~~~l~~L~~L~L~~-n~l~~~~~-------~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l 99 (290)
T 1p9a_G 34 TILHLSENLLYT-FSLA--TLMPYTRLTQLNLDR-AELTKLQV-------DGTLPVLGTLDLSHN-QLQS--LPLLGQTL 99 (290)
T ss_dssp CEEECTTSCCSE-EEGG--GGTTCTTCCEEECTT-SCCCEEEC-------CSCCTTCCEEECCSS-CCSS--CCCCTTTC
T ss_pred CEEEcCCCcCCc-cCHH--HhhcCCCCCEEECCC-CccCcccC-------CCCCCcCCEEECCCC-cCCc--CchhhccC
Confidence 348888887322 1111 234678888888888 44554211 134578888888884 5542 11112356
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|+++++ .++.... .....+++|+.|+++++ .++..... ....+++|+.|+++++ .++.. .
T Consensus 100 ~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~l-----~----- 164 (290)
T 1p9a_G 100 PALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGN-ELKTLPPG-LLTPTPKLEKLSLANN-NLTEL-----P----- 164 (290)
T ss_dssp TTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCSCC-----C-----
T ss_pred CCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCC-CCCccChh-hcccccCCCEEECCCC-cCCcc-----C-----
Confidence 77888888876 4432111 11235678888888887 56532111 1234677888888874 45421 0
Q ss_pred hhhHHHhcCCccceeecccCCCCC
Q 026356 184 LMSEFIYHGIRFFQAVQINSSNGG 207 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~~~ 207 (240)
.-.+.+++.|+.++++.+.+.
T Consensus 165 ---~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 165 ---AGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCC
T ss_pred ---HHHhcCcCCCCEEECCCCcCC
Confidence 002244556666666655554
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.34 E-value=4.6e-08 Score=87.24 Aligned_cols=160 Identities=12% Similarity=0.123 Sum_probs=82.1
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHH-HHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
.+++|++|++++ +.+.+..... ...+++|+.|+++++ .++.- .+......+++|++|+++++ .++...-..
T Consensus 351 ~l~~L~~L~l~~-n~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~ 422 (562)
T 3a79_B 351 SPSSFTFLNFTQ-NVFTDSVFQG-----CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDR 422 (562)
T ss_dssp SCCCCCEEECCS-SCCCTTTTTT-----CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSC
T ss_pred CCCCceEEECCC-Cccccchhhh-----hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChh
Confidence 455666666666 3444321111 134466666666664 44431 11111224666666666665 232211011
Q ss_pred HHHcCCcCCEEeccCCCCCCHHHHHHHHHhC-CCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccC
Q 026356 125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNY-QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS 203 (240)
Q Consensus 125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~-~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~ 203 (240)
....+++|+.|++++| .+++... ... ++|+.|+++++ .++. + +. ...+++.|+.++++.
T Consensus 423 ~~~~l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N-~l~~-----i----p~-----~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 423 TCAWAESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNN-RIMS-----I----PK-----DVTHLQALQELNVAS 482 (562)
T ss_dssp CCCCCTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSS-CCCC-----C----CT-----TTTSSCCCSEEECCS
T ss_pred hhcCcccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCC-cCcc-----c----Ch-----hhcCCCCCCEEECCC
Confidence 1224456666666666 5553222 122 46777777764 4441 0 10 123667788888887
Q ss_pred CCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 204 SNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
+.+..... . .+ ..+++|+.|++.++|-.+|
T Consensus 483 N~l~~l~~-~-~~--~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 483 NQLKSVPD-G-VF--DRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCCCCCT-T-ST--TTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCCH-H-HH--hcCCCCCEEEecCCCcCCC
Confidence 77764311 1 13 5678888888877665443
No 95
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.32 E-value=8.5e-10 Score=91.42 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=94.9
Q ss_pred eEEeccC-CCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 24 KVIDLRE-MNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 24 ~~L~l~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
+.|++++ +...+ ..... +..+++|++|++++ +.+.......+ ..+++|++|+++++ .++...-..+. .
T Consensus 79 ~~L~L~~~n~l~~-~~p~~--l~~l~~L~~L~Ls~-n~l~~~~p~~~-----~~l~~L~~L~Ls~N-~l~~~~p~~~~-~ 147 (313)
T 1ogq_A 79 NFLYIGGINNLVG-PIPPA--IAKLTQLHYLYITH-TNVSGAIPDFL-----SQIKTLVTLDFSYN-ALSGTLPPSIS-S 147 (313)
T ss_dssp SEEEEEEETTEES-CCCGG--GGGCTTCSEEEEEE-ECCEEECCGGG-----GGCTTCCEEECCSS-EEESCCCGGGG-G
T ss_pred CeeeCCCCCcccc-cCChh--HhcCCCCCEEECcC-CeeCCcCCHHH-----hCCCCCCEEeCCCC-ccCCcCChHHh-c
Confidence 3488875 44221 11111 24778888888887 34542211111 23477888888874 44421111222 4
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCC-cCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCK-HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN 181 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~ 181 (240)
+++|++|+++++ .++...-..+ ..++ +|+.|+++++ .++......+. .++ |+.|+++++ .++......+. .
T Consensus 148 l~~L~~L~L~~N-~l~~~~p~~l-~~l~~~L~~L~L~~N-~l~~~~~~~~~-~l~-L~~L~Ls~N-~l~~~~~~~~~-~- 219 (313)
T 1ogq_A 148 LPNLVGITFDGN-RISGAIPDSY-GSFSKLFTSMTISRN-RLTGKIPPTFA-NLN-LAFVDLSRN-MLEGDASVLFG-S- 219 (313)
T ss_dssp CTTCCEEECCSS-CCEEECCGGG-GCCCTTCCEEECCSS-EEEEECCGGGG-GCC-CSEEECCSS-EEEECCGGGCC-T-
T ss_pred CCCCCeEECcCC-cccCcCCHHH-hhhhhcCcEEECcCC-eeeccCChHHh-CCc-ccEEECcCC-cccCcCCHHHh-c-
Confidence 777778877766 3432111112 2333 6667776666 44321111111 122 555555543 22211000000 0
Q ss_pred hhhhhHH------------HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356 182 ILLMSEF------------IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG 236 (240)
Q Consensus 182 ~~~l~~l------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 236 (240)
...++.+ .+..++.|+.++++.+.+..... ..+ ..+++|+.|+++++.-.|
T Consensus 220 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l--~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP--QGL--TQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp TSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC--GGG--GGCTTCCEEECCSSEEEE
T ss_pred CCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC--hHH--hcCcCCCEEECcCCcccc
Confidence 0001110 23567889999999888864421 123 578999999999886543
No 96
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.31 E-value=1.5e-08 Score=92.14 Aligned_cols=45 Identities=2% Similarity=-0.105 Sum_probs=30.1
Q ss_pred hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356 190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ 237 (240)
Q Consensus 190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d 237 (240)
+.+++.|+.++++.+.+.... ...+. ..+++|+.|++.++|-..|
T Consensus 580 ~~~l~~L~~L~L~~N~l~~~~-~~~~~--~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITSVE-KKVFG--PAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTTCTTCCEEECTTSCCCBCC-HHHHH--HHHTTCSEEECTTCCCCBC
T ss_pred hCCCCCCCEEECCCCcCCccC-hhHhc--ccccccCEEEccCCCcccC
Confidence 456778888888888777652 22222 2567888888888775544
No 97
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.31 E-value=8.6e-08 Score=83.54 Aligned_cols=169 Identities=13% Similarity=0.107 Sum_probs=103.8
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.+.|++++|...+- .+..+++|++|+++++ .++... ...+++|++|+++++ .++... ...
T Consensus 66 L~~L~Ls~n~l~~~------~~~~l~~L~~L~Ls~N-~l~~~~--------~~~l~~L~~L~L~~N-~l~~l~----~~~ 125 (457)
T 3bz5_A 66 LTKLICTSNNITTL------DLSQNTNLTYLACDSN-KLTNLD--------VTPLTKLTYLNCDTN-KLTKLD----VSQ 125 (457)
T ss_dssp CSEEECCSSCCSCC------CCTTCTTCSEEECCSS-CCSCCC--------CTTCTTCCEEECCSS-CCSCCC----CTT
T ss_pred CCEEEccCCcCCeE------ccccCCCCCEEECcCC-CCceee--------cCCCCcCCEEECCCC-cCCeec----CCC
Confidence 34488888874331 2347788888888884 465531 245688888888885 555421 234
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 182 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~ 182 (240)
+++|++|+++++ .++... ...+++|+.|++++|..++... ...+++|+.|+++++ .++... + ...+
T Consensus 126 l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~---l-~~l~ 191 (457)
T 3bz5_A 126 NPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELD---V-SQNK 191 (457)
T ss_dssp CTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCC---C-TTCT
T ss_pred CCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceec---c-ccCC
Confidence 777888888776 444321 2356677777777774444321 123566777777664 444321 1 1111
Q ss_pred hhhhH----------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 183 LLMSE----------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 183 ~~l~~----------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.++. +.+..++.|+.++++.+.+... . + ..+++|+.|++.++.
T Consensus 192 -~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p----~--~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 192 -LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-D----V--TPLTQLTYFDCSVNP 244 (457)
T ss_dssp -TCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C----C--TTCTTCSEEECCSSC
T ss_pred -CCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-C----c--cccCCCCEEEeeCCc
Confidence 1222 2346678899999999988774 2 3 678999999998765
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=1.7e-07 Score=87.73 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=41.4
Q ss_pred CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCH-H---HHHHHH---HcCCcCCEEeccCCCCCCHHHH
Q 026356 76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-I---GIQHLV---KNCKHIIDLNLSGCKNLLDKSL 148 (240)
Q Consensus 76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~---~~~~l~---~~~~~L~~L~l~~c~~ltd~~l 148 (240)
.+++|+.|++++|. +....-..+. .+++|+.|+++++..++. . .+..+. ..+++|+.|++++| .++. +
T Consensus 489 ~L~~L~~L~Ls~N~-l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~--i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCP-NMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE--F 563 (876)
T ss_dssp GCTTCCEEEEESCT-TCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB--C
T ss_pred cCCCCCEEECcCCC-CCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc--c
Confidence 34666667766652 2111111122 366666666666532554 1 122221 23346666666666 4541 2
Q ss_pred HH--HHHhCCCCcEEeccCC
Q 026356 149 QL--IADNYQELESLNLTRY 166 (240)
Q Consensus 149 ~~--l~~~~~~L~~L~l~~c 166 (240)
.. ....+++|+.|+++++
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTS
T ss_pred CChhhhhcCCCCCEEECCCC
Confidence 11 2234666666666664
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.27 E-value=1.9e-07 Score=75.38 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=97.1
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|++++|.... +. .+..+++|+.|+++++ .+++..- ...+++|+.|+++++ .+++- ..+..
T Consensus 44 ~~L~l~~n~i~~---l~--~l~~l~~L~~L~L~~N-~i~~~~~-------l~~l~~L~~L~L~~N-~l~~l--~~~~~-- 105 (263)
T 1xeu_A 44 QNFNGDNSNIQS---LA--GMQFFTNLKELHLSHN-QISDLSP-------LKDLTKLEELSVNRN-RLKNL--NGIPS-- 105 (263)
T ss_dssp SEEECTTSCCCC---CT--TGGGCTTCCEEECCSS-CCCCCGG-------GTTCSSCCEEECCSS-CCSCC--TTCCC--
T ss_pred cEEECcCCCccc---ch--HHhhCCCCCEEECCCC-ccCCChh-------hccCCCCCEEECCCC-ccCCc--Ccccc--
Confidence 349999887432 22 2357899999999994 5665332 245699999999996 66541 12222
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|+++++ .+++. .. ...+++|+.|+++++ .+++.. .+ ..+++|+.|+++++ .+++. .
T Consensus 106 ~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~--~l-~~l~~L~~L~L~~N-~i~~~-------~--- 166 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSIV--ML-GFLSKLEVLDLHGN-EITNT-------G--- 166 (263)
T ss_dssp SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBCG--GG-GGCTTCCEEECTTS-CCCBC-------T---
T ss_pred CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCCh--HH-ccCCCCCEEECCCC-cCcch-------H---
Confidence 78999999988 56542 22 357889999999999 787642 22 45899999999995 66653 1
Q ss_pred hhhHHHhcCCccceeecccCCCCC
Q 026356 184 LMSEFIYHGIRFFQAVQINSSNGG 207 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~~~ 207 (240)
.+.+++.|+.++++.+.+.
T Consensus 167 -----~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 167 -----GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -----TSTTCCCCCEEEEEEEEEE
T ss_pred -----HhccCCCCCEEeCCCCccc
Confidence 2355667777777655443
No 100
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.27 E-value=1.2e-08 Score=85.00 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=49.9
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 182 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~ 182 (240)
+++|++|+++++ .+++..... ...+++|++|++++| .++.- ..-...+++|+.|+++++ .+++.+...+....
T Consensus 216 l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~- 288 (332)
T 2ft3_A 216 YSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNN-KLSRV--PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG- 288 (332)
T ss_dssp CTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSS-CCCBC--CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSS-
T ss_pred CCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCC-cCeec--ChhhhcCccCCEEECCCC-CCCccChhHccccc-
Confidence 455666666554 332211111 134556666666666 45421 110123566666666663 44432221111000
Q ss_pred hhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 183 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 183 ~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.......++.+++..+.+.........+ ..+++|+.++++++.
T Consensus 289 ------~~~~~~~l~~L~l~~N~~~~~~~~~~~~--~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 ------FGVKRAYYNGISLFNNPVPYWEVQPATF--RCVTDRLAIQFGNYK 331 (332)
T ss_dssp ------CCSSSCCBSEEECCSSSSCGGGSCGGGG--TTBCCSTTEEC----
T ss_pred ------cccccccccceEeecCcccccccCcccc--cccchhhhhhccccc
Confidence 0011344666666666554221111223 456777777776653
No 101
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=8.7e-08 Score=89.65 Aligned_cols=133 Identities=10% Similarity=0.131 Sum_probs=82.3
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcH-H---HHHHHHHHccCCCCCccEEecCCCCCCcHHHHHH
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIED-R---HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI 98 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~-~---~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 98 (240)
.+.|+|++|...+.-. . .+.++++|+.|+++++..++. . .+..+... ...+++|+.|+++++ .++. +..
T Consensus 493 L~~L~Ls~N~l~~~iP-~--~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~-~~~l~~L~~L~Ls~N-~L~~--ip~ 565 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLP-D--FLYDLPELQSLNIACNRGISAAQLKADWTRLADD-EDTGPKIQIFYMGYN-NLEE--FPA 565 (876)
T ss_dssp CCEEEEESCTTCCSCC-G--GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHC-TTTTTTCCEEECCSS-CCCB--CCC
T ss_pred CCEEECcCCCCCccCh-H--HHhCCCCCCEEECcCCCCcccccchHHHHhhhhc-ccccCCccEEEeeCC-cCCc--cCC
Confidence 4559999987543211 2 235889999999999543766 2 23333211 245679999999996 6652 211
Q ss_pred --HHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC-CcEEeccCCCCCC
Q 026356 99 --ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE-LESLNLTRYVNMI 170 (240)
Q Consensus 99 --l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~-L~~L~l~~c~~it 170 (240)
....+++|+.|+++++ .++ .+. ....+++|+.|++++| .++. +..-...+++ |+.|++++| .++
T Consensus 566 ~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N-~l~~--lp~~l~~l~~~L~~L~Ls~N-~L~ 632 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYN-QIEE--IPEDFCAFTDQVEGLGFSHN-KLK 632 (876)
T ss_dssp HHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSS-CCSC--CCTTSCEECTTCCEEECCSS-CCC
T ss_pred hhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCC-cccc--chHHHhhccccCCEEECcCC-CCC
Confidence 2235889999999987 455 222 2346678888888888 5651 1111123556 888888875 444
No 102
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.23 E-value=2.4e-08 Score=81.82 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=101.0
Q ss_pred CCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 026356 47 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 126 (240)
Q Consensus 47 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 126 (240)
.++++.|++++ +.++...... ...+++|+.|+++++ .++..... ..+++|++|+++++ .++. +....
T Consensus 30 ~~~l~~L~L~~-N~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N-~l~~--l~~~~ 96 (290)
T 1p9a_G 30 PKDTTILHLSE-NLLYTFSLAT-----LMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQS--LPLLG 96 (290)
T ss_dssp CTTCCEEECTT-SCCSEEEGGG-----GTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSS--CCCCT
T ss_pred CCCCCEEEcCC-CcCCccCHHH-----hhcCCCCCEEECCCC-ccCcccCC---CCCCcCCEEECCCC-cCCc--Cchhh
Confidence 36799999999 5565433222 245699999999995 66542211 46889999999987 4541 22223
Q ss_pred HcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCC
Q 026356 127 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNG 206 (240)
Q Consensus 127 ~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~ 206 (240)
..+++|+.|+++++ .++......+ ..+++|+.|+++++ .++.. .. -.+.+++.|+.++++.+.+
T Consensus 97 ~~l~~L~~L~l~~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~-----~~--------~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 97 QTLPALTVLDVSFN-RLTSLPLGAL-RGLGELQELYLKGN-ELKTL-----PP--------GLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp TTCTTCCEEECCSS-CCCCCCSSTT-TTCTTCCEEECTTS-CCCCC-----CT--------TTTTTCTTCCEEECTTSCC
T ss_pred ccCCCCCEEECCCC-cCcccCHHHH-cCCCCCCEEECCCC-CCCcc-----Ch--------hhcccccCCCEEECCCCcC
Confidence 56789999999999 6764321212 35789999999995 55531 00 0345678899999988877
Q ss_pred CchhHHHHHHHhhcccccchhhhhhh
Q 026356 207 GDHLAFAYIIETNTYKHGKEKHIIET 232 (240)
Q Consensus 207 ~~~~~~~~~~~~~~~~~L~~L~l~~c 232 (240)
..... ..+ ..+++|+.|+++++
T Consensus 161 ~~l~~--~~~--~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 161 TELPA--GLL--NGLENLDTLLLQEN 182 (290)
T ss_dssp SCCCT--TTT--TTCTTCCEEECCSS
T ss_pred CccCH--HHh--cCcCCCCEEECCCC
Confidence 75421 122 45678888777654
No 103
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.23 E-value=5.4e-08 Score=82.74 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=89.5
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
.+++++.|+++++ .++......+. . +++|+.|+++++ .+++.....+ ..+++|++|+++++ .++..... .
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~-~----l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~-~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLD-S----FRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFN-AIRYLPPH-V 112 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHH-H----CCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCCCCTT-T
T ss_pred ccCCceEEEecCC-chhhCChhHhc-c----cccCcEEECCCC-cccccChhhc-cCCCCcCEEECCCC-CCCcCCHH-H
Confidence 5688999999984 45443322222 2 389999999996 6654322222 25899999999987 45432222 2
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 205 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~ 205 (240)
...+++|++|+++++ .++.... .+...+++|++|+++++ .++... +. .+.+++.|+.++++.+.
T Consensus 113 ~~~l~~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~L~~n-~l~~~~--------~~-----~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 113 FQNVPLLTVLVLERN-DLSSLPR-GIFHNTPKLTTLSMSNN-NLERIE--------DD-----TFQATTSLQNLQLSSNR 176 (390)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCBCC--------TT-----TTSSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCC-ccCcCCH-HHhcCCCCCcEEECCCC-ccCccC--------hh-----hccCCCCCCEEECCCCc
Confidence 246789999999999 6763221 12245889999999996 554310 10 23566777777777776
Q ss_pred CCch
Q 026356 206 GGDH 209 (240)
Q Consensus 206 ~~~~ 209 (240)
+...
T Consensus 177 l~~~ 180 (390)
T 3o6n_A 177 LTHV 180 (390)
T ss_dssp CSBC
T ss_pred CCcc
Confidence 6654
No 104
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.22 E-value=1.2e-07 Score=85.87 Aligned_cols=177 Identities=11% Similarity=0.106 Sum_probs=95.7
Q ss_pred hhcCCCCceEeccCCCCCcHH-------------HHHHHHHHccC--CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCE
Q 026356 44 IPRYRHVREINLEFAQDIEDR-------------HLELLKTKCLG--SLQDLESLNLNGCQKISDKGIEIISSTCPELKV 108 (240)
Q Consensus 44 ~~~~~~L~~L~l~~c~~i~~~-------------~~~~l~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~ 108 (240)
+.++++|++|+++++ .++.. ....+... .. .+++|++|++++| .+....-..+. .+++|++
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~ 277 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-PNLTKLPTFLK-ALPEMQL 277 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-TTCSSCCTTTT-TCSSCCE
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC-cCCccChHHHh-cCCCCCE
Confidence 347788888888884 46652 00111111 13 5678888888886 33221111222 4778888
Q ss_pred EEecCCCCCCH-HHHHHHH-----HcCCcCCEEeccCCCCCCHHHHHH--HHHhCCCCcEEeccCCCCCC-HHHHHHHHH
Q 026356 109 FSIYWNVRVTD-IGIQHLV-----KNCKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRYVNMI-LLGLFYIWS 179 (240)
Q Consensus 109 L~l~~~~~l~~-~~~~~l~-----~~~~~L~~L~l~~c~~ltd~~l~~--l~~~~~~L~~L~l~~c~~it-~~~~~~l~~ 179 (240)
|+++++..++. ..-..+. ..+++|+.|++++| .++. +.. ....+++|+.|+++++ .++ .-. .+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N-~l~g~ip--~~-- 349 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYN-QLEGKLP--AF-- 349 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSC-CCEEECC--CC--
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCC-cCccchh--hh--
Confidence 88887743766 2222222 23478888888888 6662 221 2245778888888875 443 211 00
Q ss_pred hChhhhhHH------------HhcCCcc-ceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356 180 NNILLMSEF------------IYHGIRF-FQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT 235 (240)
Q Consensus 180 ~~~~~l~~l------------~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 235 (240)
.....++.+ .+.+++. |+.++++.+.+... . ..+....+++|+.|++.++.-.
T Consensus 350 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l-p--~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-P--NIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC-C--SCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc-c--hhhhhcccCccCEEECcCCcCC
Confidence 011112221 2344555 77888877776632 1 1121123457888888777543
No 105
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.19 E-value=9.5e-07 Score=66.61 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=86.7
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST 102 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~ 102 (240)
.+.|++++|.... +..+. ...++|+.|++++ +.+++. . ....+++|+.|+++++ .++...- .+...
T Consensus 21 L~~L~l~~n~l~~---i~~~~-~~~~~L~~L~Ls~-N~l~~~------~-~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~~ 86 (176)
T 1a9n_A 21 DRELDLRGYKIPV---IENLG-ATLDQFDAIDFSD-NEIRKL------D-GFPLLRRLKTLLVNNN-RICRIGE-GLDQA 86 (176)
T ss_dssp CEEEECTTSCCCS---CCCGG-GGTTCCSEEECCS-SCCCEE------C-CCCCCSSCCEEECCSS-CCCEECS-CHHHH
T ss_pred ceEEEeeCCCCch---hHHhh-hcCCCCCEEECCC-CCCCcc------c-ccccCCCCCEEECCCC-cccccCc-chhhc
Confidence 4569999997432 22222 2345999999999 567653 1 2366799999999995 6664211 12235
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHH--HHHHHhCCCCcEEeccCC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLTRY 166 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l--~~l~~~~~~L~~L~l~~c 166 (240)
+++|+.|+++++ .+++-........+++|+.|+++++ .+++..- ..+...+++|+.|+++++
T Consensus 87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 899999999988 5654221112347899999999999 5654221 123456999999999985
No 106
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.17 E-value=5.6e-09 Score=86.98 Aligned_cols=39 Identities=5% Similarity=-0.141 Sum_probs=22.7
Q ss_pred cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+++.|+.++++.+.+..... ..+ ..+++|++|+++++.
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~--~~~--~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIEN--GSL--SFLPTLRELHLDNNK 252 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCT--TGG--GGCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCcCCcCCh--hHh--hCCCCCCEEECCCCc
Confidence 445567777776666654311 112 456777777777653
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.17 E-value=5.8e-08 Score=75.31 Aligned_cols=132 Identities=11% Similarity=0.087 Sum_probs=72.8
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 157 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~ 157 (240)
++|++|+++++ .++...-.. ...+++|++|+++++ .++... ......+++|++|+++++ .++..... ....+++
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGV-FDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLPNG-VFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred CCCcEEEcCCC-ccCcCChhh-hcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccCHh-HhcCccC
Confidence 45666666663 443211111 124677777777765 443211 112246788999999888 66632211 1235889
Q ss_pred CcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 158 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 158 L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
|+.|+++++ .++... + -.+.+++.|+.++++.+.+..... ..+ ..+++|+.|++.+++
T Consensus 102 L~~L~L~~N-~l~~~~--------~-----~~~~~l~~L~~L~l~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 102 LKELALNTN-QLQSLP--------D-----GVFDKLTQLKDLRLYQNQLKSVPD--GVF--DRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCEEECCSS-CCCCCC--------T-----TTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSCC
T ss_pred CCEEEcCCC-cCcccC--------H-----hHhccCCcCCEEECCCCccceeCH--HHh--ccCCCccEEEecCCC
Confidence 999999995 565311 0 023456667777776666554311 112 345666666666544
No 108
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.17 E-value=3.4e-08 Score=79.98 Aligned_cols=137 Identities=14% Similarity=0.175 Sum_probs=91.4
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
++|++|++++ +.+++..... ...+++|+.|+++++ .++......+ ..+++|++|+++++ .++...... ..
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~ 97 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYS-----FFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGA-FS 97 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTT-----TTTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTT-TT
T ss_pred CCccEEECCC-CcccccCHhH-----hccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCC-ccCccChhh-hc
Confidence 4699999999 4566543322 245689999999996 6654222222 34889999999987 454332222 24
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 207 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~ 207 (240)
.+++|++|+++++ .++......+ ..+++|+.|+++++ .+++..+ +. .+.+++.|+.++++.+.+.
T Consensus 98 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~l-------~~-----~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 98 GLSSLQKLVAVET-NLASLENFPI-GHLKTLKELNVAHN-LIQSFKL-------PE-----YFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCCC-TTCTTCCEEECCSS-CCCCCCC-------CG-----GGGGCTTCCEEECCSSCCC
T ss_pred CCccccEEECCCC-CccccCchhc-ccCCCCCEEECcCC-ccceecC-------ch-----hhccCCCCCEEECCCCCCC
Confidence 6789999999999 5654222112 35889999999995 5543110 11 3466788999999988887
Q ss_pred ch
Q 026356 208 DH 209 (240)
Q Consensus 208 ~~ 209 (240)
..
T Consensus 163 ~~ 164 (276)
T 2z62_A 163 SI 164 (276)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 109
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.15 E-value=4.8e-09 Score=83.26 Aligned_cols=112 Identities=10% Similarity=0.024 Sum_probs=71.4
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
++|+.|++++ +.++...... ...+++|+.|+++++..++.-.-..+ ..+++|++|++++|..++..... ...
T Consensus 31 ~~l~~L~l~~-n~l~~i~~~~-----~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~i~~~-~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRTIPSHA-----FSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPD-ALK 102 (239)
T ss_dssp TTCCEEEEES-CCCSEECTTT-----TTTCTTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCEECTT-SEE
T ss_pred CcccEEEEeC-CcceEECHHH-----ccCCCCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeEcCHH-HhC
Confidence 3799999998 4565432211 24568999999999632543211111 35899999999973355432211 124
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCc---EEeccCCCCCCH
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELE---SLNLTRYVNMIL 171 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~---~L~l~~c~~it~ 171 (240)
.+++|+.|+++++ .++. +.. ...+++|+ .|+++++..++.
T Consensus 103 ~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 103 ELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp CCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred CCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhh
Confidence 6789999999998 5654 222 23567777 999998635543
No 110
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.14 E-value=6.1e-09 Score=97.35 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=74.2
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+|++|.. ..... -.+..+++|++|+++++..+....... ...+++|+.|+++++ .++...-..+ ..++
T Consensus 28 ~LdLs~N~i-~~i~~--~~~~~l~~L~~LdLs~n~~~~~i~~~~-----f~~L~~L~~L~Ls~N-~l~~~~p~~~-~~l~ 97 (844)
T 3j0a_A 28 RLLLSFNYI-RTVTA--SSFPFLEQLQLLELGSQYTPLTIDKEA-----FRNLPNLRILDLGSS-KIYFLHPDAF-QGLF 97 (844)
T ss_dssp EEEEESCCC-CEECS--SSCSSCCSCSEEEECTTCCCCEECTTT-----TSSCTTCCEEECTTC-CCCEECTTSS-CSCS
T ss_pred EEECCCCcC-CccCh--hHCcccccCeEEeCCCCCCccccCHHH-----hcCCCCCCEEECCCC-cCcccCHhHc-cCCc
Confidence 488888763 22111 123477888888888753332211111 245578888888885 5543211122 2477
Q ss_pred CCCEEEecCCCCCCHHHHHH-HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356 105 ELKVFSIYWNVRVTDIGIQH-LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 170 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~-l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it 170 (240)
+|++|++++| .+++..... ....+++|++|++++| .++.........++++|+.|+++++ .++
T Consensus 98 ~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~ 161 (844)
T 3j0a_A 98 HLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIF 161 (844)
T ss_dssp SCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCC
T ss_pred ccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCC
Confidence 7888888876 444321111 1235678888888887 5554322222245778888888774 443
No 111
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.12 E-value=9e-08 Score=85.82 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=83.6
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+|++|.. .. +..-.+..+++|++|++++| .|....-. ....+++|++|+++++ .++.-....+ ..++
T Consensus 56 ~LdLs~N~i-~~--l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~-----~f~~L~~L~~L~Ls~N-~l~~l~~~~f-~~L~ 124 (635)
T 4g8a_A 56 NLDLSFNPL-RH--LGSYSFFSFPELQVLDLSRC-EIQTIEDG-----AYQSLSHLSTLILTGN-PIQSLALGAF-SGLS 124 (635)
T ss_dssp EEECTTSCC-CE--ECTTTTTTCTTCCEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCEECGGGG-TTCT
T ss_pred EEEeeCCCC-CC--CCHHHHhCCCCCCEEECCCC-cCCCcChh-----HhcCCCCCCEEEccCC-cCCCCCHHHh-cCCC
Confidence 499999873 32 22222458899999999995 45432111 1245689999999995 5654221122 3588
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI 170 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it 170 (240)
+|++|+++++ .++.-.-. ....+++|++|+++++ .++..........+++|+.|+++++ .++
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~ 186 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENF-PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQ 186 (635)
T ss_dssp TCCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCC
T ss_pred CCCEEECCCC-cCCCCChh-hhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-ccc
Confidence 9999999987 44421111 1246789999999999 5654322223345889999999985 454
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.11 E-value=5e-08 Score=82.29 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=47.6
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
.+++|+.|++++ +.+....-.. ...+++|++|+++++ .++...-..+ ..+++|++|+++++ .++...-. .
T Consensus 62 ~l~~L~~L~L~~-N~i~~i~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~i~~~~~~-~ 131 (361)
T 2xot_A 62 RLTNLHSLLLSH-NHLNFISSEA-----FVPVPNLRYLDLSSN-HLHTLDEFLF-SDLQALEVLLLYNN-HIVVVDRN-A 131 (361)
T ss_dssp CCTTCCEEECCS-SCCCEECTTT-----TTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECTT-T
T ss_pred cccccCEEECCC-CcCCccChhh-----ccCCCCCCEEECCCC-cCCcCCHHHh-CCCcCCCEEECCCC-cccEECHH-H
Confidence 455566666665 3343221111 123455666666653 4432111111 13555666666654 33221111 1
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHH--HhCCCCcEEeccCCCCCC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIA--DNYQELESLNLTRYVNMI 170 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~--~~~~~L~~L~l~~c~~it 170 (240)
...+++|+.|+++++ .++......+. ..+++|+.|+++++ .++
T Consensus 132 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 176 (361)
T 2xot_A 132 FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLK 176 (361)
T ss_dssp TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCC
T ss_pred hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCC
Confidence 124456666666665 44431111110 23555666666653 444
No 113
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.08 E-value=3.4e-08 Score=87.79 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356 76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 155 (240)
Q Consensus 76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~ 155 (240)
.+++|+.|++++| .++...... ...+++|++|++++| .+++..+......+++|+.|++++| .+++.....+ ..+
T Consensus 419 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l 493 (570)
T 2z63_A 419 SLRNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF-NSL 493 (570)
T ss_dssp TCTTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-TTC
T ss_pred cCCCCCEEeCcCC-cccccchhh-hhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCChhhh-hcc
Confidence 4467777777775 333221111 124788888888887 3443222233457889999999999 7775433333 358
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356 156 QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD 208 (240)
Q Consensus 156 ~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~ 208 (240)
++|+.|++++| .+++.. +. .+.+++.|+.++++.+.+..
T Consensus 494 ~~L~~L~l~~n-~l~~~~--------~~-----~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 494 SSLQVLNMASN-QLKSVP--------DG-----IFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCCEEECCSS-CCSCCC--------TT-----TTTTCTTCCEEECCSSCBCC
T ss_pred cCCCEEeCCCC-cCCCCC--------HH-----HhhcccCCcEEEecCCcccC
Confidence 89999999996 555421 11 24567889999998776653
No 114
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.08 E-value=8.9e-08 Score=85.86 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=89.7
Q ss_pred CCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 026356 49 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN 128 (240)
Q Consensus 49 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 128 (240)
++++|++++ +.|+...-.. ...+++|++|++++| .++.-.-.++ ..+++|++|+++++ +++.-... ...+
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~-----f~~l~~L~~L~Ls~N-~i~~i~~~~f-~~L~~L~~L~Ls~N-~l~~l~~~-~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYS-----FFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALG-AFSG 122 (635)
T ss_dssp TCCEEECTT-SCCCEECTTT-----TTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECGG-GGTT
T ss_pred CCCEEEeeC-CCCCCCCHHH-----HhCCCCCCEEECCCC-cCCCcChhHh-cCCCCCCEEEccCC-cCCCCCHH-HhcC
Confidence 699999999 6776533222 245699999999996 5543111111 35899999999988 45432211 2357
Q ss_pred CCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356 129 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD 208 (240)
Q Consensus 129 ~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~ 208 (240)
+++|++|++++| .++...-.. ..++++|+.|+++++ .++.... +. ...+++.|+.++++.+.+..
T Consensus 123 L~~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N-~l~~~~~-------~~-----~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 123 LSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKL-------PE-----YFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCC-------CG-----GGGGCTTCCEEECCSSCCCE
T ss_pred CCCCCEEECCCC-cCCCCChhh-hhcCcccCeeccccC-ccccCCC-------ch-----hhccchhhhhhcccCccccc
Confidence 889999999999 666422111 235889999999995 4432110 11 33567789999998887765
Q ss_pred h
Q 026356 209 H 209 (240)
Q Consensus 209 ~ 209 (240)
.
T Consensus 188 ~ 188 (635)
T 4g8a_A 188 I 188 (635)
T ss_dssp E
T ss_pred c
Confidence 3
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.06 E-value=1.8e-07 Score=73.39 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=15.1
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
.+++|+.|+++++ .++......+ ..+++|+.|++++
T Consensus 126 ~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 126 DLHNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQ 161 (220)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCS
T ss_pred CCCCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCC
Confidence 3445555555555 3332211111 1244555555554
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.04 E-value=3.8e-07 Score=71.96 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=75.7
Q ss_pred CCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 026356 47 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 126 (240)
Q Consensus 47 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 126 (240)
.++|+.|++++ +.+....-.. ...+++|+.|+++++ .++...... ...+++|+.|+++++ .++... ....
T Consensus 39 ~~~L~~L~Ls~-n~i~~~~~~~-----~~~l~~L~~L~L~~N-~l~~i~~~~-~~~l~~L~~L~Ls~N-~l~~l~-~~~~ 108 (229)
T 3e6j_A 39 PTNAQILYLHD-NQITKLEPGV-----FDSLINLKELYLGSN-QLGALPVGV-FDSLTQLTVLDLGTN-QLTVLP-SAVF 108 (229)
T ss_dssp CTTCSEEECCS-SCCCCCCTTT-----TTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCC-TTTT
T ss_pred CCCCCEEEcCC-CccCccCHHH-----hhCccCCcEEECCCC-CCCCcChhh-cccCCCcCEEECCCC-cCCccC-hhHh
Confidence 36788888887 4454421111 234578888888874 553221111 124777888888876 444211 1112
Q ss_pred HcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCC
Q 026356 127 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNG 206 (240)
Q Consensus 127 ~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~ 206 (240)
..+++|+.|+++++ .++.-. ..+ ..+++|+.|+++++ .++.. ..-.+.+++.|+.+++..+.+
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~lp-~~~-~~l~~L~~L~L~~N-~l~~~-------------~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTELP-RGI-ERLTHLTHLALDQN-QLKSI-------------PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCTTCCEEECCSS-CCCSCC-TTG-GGCTTCSEEECCSS-CCCCC-------------CTTTTTTCTTCCEEECTTSCB
T ss_pred CcchhhCeEeccCC-cccccC-ccc-ccCCCCCEEECCCC-cCCcc-------------CHHHHhCCCCCCEEEeeCCCc
Confidence 35678888888888 565211 112 45778888888874 55421 000235566777777766665
Q ss_pred C
Q 026356 207 G 207 (240)
Q Consensus 207 ~ 207 (240)
.
T Consensus 172 ~ 172 (229)
T 3e6j_A 172 D 172 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 117
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.04 E-value=8.4e-08 Score=86.95 Aligned_cols=36 Identities=11% Similarity=-0.067 Sum_probs=17.9
Q ss_pred cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356 191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI 233 (240)
Q Consensus 191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 233 (240)
.+++.|+.++++.+.+... . ..-.++|+.|++++++
T Consensus 563 ~~l~~L~~L~Ls~N~l~~i-p------~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKV-N------EKITPNISVLDIKDNP 598 (636)
T ss_dssp GGCSSCCEEECCSSCCCBC-C------SCCCTTCCEEECCSCT
T ss_pred hcCCCCCEEECCCCcCCcc-C------HhHhCcCCEEECcCCC
Confidence 3455566666666555322 1 0112566666665553
No 118
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.03 E-value=5.1e-07 Score=80.40 Aligned_cols=162 Identities=9% Similarity=0.127 Sum_probs=103.2
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|++++|...+ .... .+..+++|+.|++++ +.++... .+... ...+++|+.|+++++ .++...-......+
T Consensus 356 ~~L~l~~n~l~~-~~~~--~~~~l~~L~~L~L~~-N~l~~~~--~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l 427 (562)
T 3a79_B 356 TFLNFTQNVFTD-SVFQ--GCSTLKRLQTLILQR-NGLKNFF--KVALM-TKNMSSLETLDVSLN-SLNSHAYDRTCAWA 427 (562)
T ss_dssp CEEECCSSCCCT-TTTT--TCCSCSSCCEEECCS-SCCCBTT--HHHHT-TTTCTTCCEEECTTS-CCBSCCSSCCCCCC
T ss_pred eEEECCCCcccc-chhh--hhcccCCCCEEECCC-CCcCCcc--cchhh-hcCCCCCCEEECCCC-cCCCccChhhhcCc
Confidence 349999887432 1122 234789999999999 4666421 11111 245699999999996 55431111122357
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcC-CcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNC-KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 182 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~ 182 (240)
++|++|+++++ .+++.. .... ++|+.|++++| .++.-. ..+. .+++|+.|+++++ .++. +...
T Consensus 428 ~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip-~~~~-~l~~L~~L~L~~N-~l~~-----l~~~-- 491 (562)
T 3a79_B 428 ESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNN-RIMSIP-KDVT-HLQALQELNVASN-QLKS-----VPDG-- 491 (562)
T ss_dssp TTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSS-CCCCCC-TTTT-SSCCCSEEECCSS-CCCC-----CCTT--
T ss_pred ccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCC-cCcccC-hhhc-CCCCCCEEECCCC-CCCC-----CCHH--
Confidence 89999999988 566432 2333 69999999999 777311 1122 5889999999995 5653 1100
Q ss_pred hhhhHHHhcCCccceeecccCCCCCchhHHHHH
Q 026356 183 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYI 215 (240)
Q Consensus 183 ~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~ 215 (240)
.+.+++.|+.++++.+..........+
T Consensus 492 ------~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 492 ------VFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp ------STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred ------HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 246678899999988887754444444
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.03 E-value=2.9e-07 Score=72.65 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=83.4
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|++++|....- ..-.+..+++|++|++++ +.+...... ....+++|+.|+++++ .++...-. ....++
T Consensus 44 ~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~-N~l~~i~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~ 112 (229)
T 3e6j_A 44 ILYLHDNQITKL---EPGVFDSLINLKELYLGS-NQLGALPVG-----VFDSLTQLTVLDLGTN-QLTVLPSA-VFDRLV 112 (229)
T ss_dssp EEECCSSCCCCC---CTTTTTTCTTCCEEECCS-SCCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred EEEcCCCccCcc---CHHHhhCccCCcEEECCC-CCCCCcChh-----hcccCCCcCEEECCCC-cCCccChh-HhCcch
Confidence 489988874321 111234789999999999 456432211 1245699999999995 66532211 123588
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
+|++|+++++ .++. +..-...+++|+.|+++++ .++..... ....+++|+.|+++++
T Consensus 113 ~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 113 HLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQN-QLKSIPHG-AFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECTTS
T ss_pred hhCeEeccCC-cccc--cCcccccCCCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCC
Confidence 9999999987 5552 2122357899999999999 67643222 2245889999999985
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.01 E-value=1.5e-07 Score=73.89 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=87.6
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
++|+.|++++ +.+...... ....+++|+.|+++++ .++...-..+ ..+++|++|+++++ .++.-. ..+..
T Consensus 32 ~~l~~L~l~~-n~i~~i~~~-----~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKVIPPG-----AFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGN-KITELP-KSLFE 101 (220)
T ss_dssp TTCCEEECCS-SCCCEECTT-----SSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSS-CCCCCC-TTTTT
T ss_pred cCCCEEECCC-CcCCCcCHh-----HhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCC-cCCccC-HhHcc
Confidence 5799999998 556543221 1245689999999995 6654221222 24789999999987 454211 11234
Q ss_pred cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356 128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 207 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~ 207 (240)
.+++|+.|+++++ .++......+ ..+++|+.|+++++ .++.... -.+.+++.|+.++++.+.+.
T Consensus 102 ~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-------------~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 102 GLFSLQLLLLNAN-KINCLRVDAF-QDLHNLNLLSLYDN-KLQTIAK-------------GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCT-------------TTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCC-CCCEeCHHHc-CCCCCCCEEECCCC-cCCEECH-------------HHHhCCCCCCEEEeCCCCcC
Confidence 6789999999999 6765322222 35789999999995 5654210 13456778888888776664
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.01 E-value=1.5e-07 Score=73.79 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=6.4
Q ss_pred cCCCCceEeccC
Q 026356 46 RYRHVREINLEF 57 (240)
Q Consensus 46 ~~~~L~~L~l~~ 57 (240)
.+++|+.|++++
T Consensus 55 ~l~~L~~L~L~~ 66 (220)
T 2v70_A 55 KLPQLRKINFSN 66 (220)
T ss_dssp GCTTCCEEECCS
T ss_pred cCCCCCEEECCC
Confidence 445555555555
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.01 E-value=3.4e-07 Score=70.44 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=70.1
Q ss_pred hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356 45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
..+++|+.|+++++ .+.+. ..+. . +++|+.|+++++ .++. +......+++|++|+++++ .+++- ..
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l--~~~~-~----l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l--~~ 110 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKI--SSLS-G----MENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASL--SG 110 (198)
T ss_dssp HHTTTCSEEECSEE-EESCC--CCHH-H----HTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCCH--HH
T ss_pred hcCCCCCEEECCCC-CCccc--cccc-c----CCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCcC--Cc
Confidence 47889999999984 45442 1222 2 288999999885 5542 2222334678999999887 56542 22
Q ss_pred HHHcCCcCCEEeccCCCCCCHHHH-HHHHHhCCCCcEEeccCC
Q 026356 125 LVKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRY 166 (240)
Q Consensus 125 l~~~~~~L~~L~l~~c~~ltd~~l-~~l~~~~~~L~~L~l~~c 166 (240)
...+++|+.|+++++ .+++... ..+ ..+++|+.|+++++
T Consensus 111 -~~~l~~L~~L~l~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 111 -IEKLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGN 150 (198)
T ss_dssp -HHHHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSC
T ss_pred -cccCCCCCEEECCCC-cCCchhHHHHH-hcCCCCCEEEecCC
Confidence 346688999999998 6776433 333 35889999999885
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.01 E-value=1.2e-07 Score=74.50 Aligned_cols=154 Identities=10% Similarity=0.094 Sum_probs=95.8
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.++++++.... +...-.+.+++|++++ +.++....... ...+++|+.|+++++ .++...-..+ ..+
T Consensus 14 ~~l~~s~n~l~~------iP~~~~~~~~~L~L~~-N~l~~~~~~~~----~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l 80 (220)
T 2v70_A 14 TTVDCSNQKLNK------IPEHIPQYTAELRLNN-NEFTVLEATGI----FKKLPQLRKINFSNN-KITDIEEGAF-EGA 80 (220)
T ss_dssp TEEECCSSCCSS------CCSCCCTTCSEEECCS-SCCCEECCCCC----GGGCTTCCEEECCSS-CCCEECTTTT-TTC
T ss_pred CEeEeCCCCccc------CccCCCCCCCEEEcCC-CcCCccCchhh----hccCCCCCEEECCCC-cCCEECHHHh-CCC
Confidence 357777776321 2111234689999999 55654311111 134589999999995 6654222122 248
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|+++++ .++...-. ....+++|++|+++++ .++......+ ..+++|+.|+++++ .++... +.
T Consensus 81 ~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~--------~~ 147 (220)
T 2v70_A 81 SGVNEILLTSN-RLENVQHK-MFKGLESLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDN-QITTVA--------PG 147 (220)
T ss_dssp TTCCEEECCSS-CCCCCCGG-GGTTCSSCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTS-CCCCBC--------TT
T ss_pred CCCCEEECCCC-ccCccCHh-HhcCCcCCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCC-cCCEEC--------HH
Confidence 89999999987 45432211 2246889999999999 6764322222 25789999999995 565411 11
Q ss_pred hhhHHHhcCCccceeecccCCCCCc
Q 026356 184 LMSEFIYHGIRFFQAVQINSSNGGD 208 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~~~~ 208 (240)
.+.+++.|+.++++.+.+..
T Consensus 148 -----~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 148 -----AFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp -----TTTTCTTCCEEECCSCCEEC
T ss_pred -----HhcCCCCCCEEEecCcCCcC
Confidence 34567888889887777653
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.95 E-value=4.8e-07 Score=69.59 Aligned_cols=123 Identities=21% Similarity=0.233 Sum_probs=82.5
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.|++++|.... +. .+..+++|+.|+++++ .+.. +......+ ++|+.|+++++ .++.- ..+. .+
T Consensus 51 ~~L~ls~n~l~~---l~--~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~----~~L~~L~L~~N-~l~~l--~~~~-~l 114 (198)
T 1ds9_A 51 KHLALSTNNIEK---IS--SLSGMENLRILSLGRN-LIKK--IENLDAVA----DTLEELWISYN-QIASL--SGIE-KL 114 (198)
T ss_dssp SEEECSEEEESC---CC--CHHHHTTCCEEEEEEE-EECS--CSSHHHHH----HHCSEEEEEEE-ECCCH--HHHH-HH
T ss_pred CEEECCCCCCcc---cc--ccccCCCCCEEECCCC-Cccc--ccchhhcC----CcCCEEECcCC-cCCcC--Cccc-cC
Confidence 348888776333 22 2347899999999985 4542 12222222 78999999996 77653 3344 47
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHH---------HHHHHHhCCCCcEEecc
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS---------LQLIADNYQELESLNLT 164 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~---------l~~l~~~~~~L~~L~l~ 164 (240)
++|++|+++++ .+++.........+++|+.|++++| .+++.. ...+...+++|+.|+-.
T Consensus 115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 89999999987 5765443234457899999999999 565431 12234569999999843
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.85 E-value=2.8e-07 Score=77.66 Aligned_cols=178 Identities=11% Similarity=0.118 Sum_probs=108.2
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.++++++... .+...-.+.++.|++++ +.++......+ ...+++|+.|+++++ .++...-..+ ..+
T Consensus 21 ~~l~c~~~~l~------~iP~~~~~~l~~L~Ls~-N~l~~l~~~~~----~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l 87 (361)
T 2xot_A 21 NILSCSKQQLP------NVPQSLPSYTALLDLSH-NNLSRLRAEWT----PTRLTNLHSLLLSHN-HLNFISSEAF-VPV 87 (361)
T ss_dssp TEEECCSSCCS------SCCSSCCTTCSEEECCS-SCCCEECTTSS----SSCCTTCCEEECCSS-CCCEECTTTT-TTC
T ss_pred CEEEeCCCCcC------ccCccCCCCCCEEECCC-CCCCccChhhh----hhcccccCEEECCCC-cCCccChhhc-cCC
Confidence 34777766521 12211234699999999 56765332211 115699999999995 6654322222 258
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL 183 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~ 183 (240)
++|++|+++++ .++...- .....+++|+.|+++++ .++......+ ..+++|+.|+++++ .++.... .
T Consensus 88 ~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~-----~--- 154 (361)
T 2xot_A 88 PNLRYLDLSSN-HLHTLDE-FLFSDLQALEVLLLYNN-HIVVVDRNAF-EDMAQLQKLYLSQN-QISRFPV-----E--- 154 (361)
T ss_dssp TTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCSCCG-----G---
T ss_pred CCCCEEECCCC-cCCcCCH-HHhCCCcCCCEEECCCC-cccEECHHHh-CCcccCCEEECCCC-cCCeeCH-----H---
Confidence 89999999987 4543211 12346789999999999 6764322222 35889999999995 6654110 0
Q ss_pred hhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccc--cchhhhhhhh
Q 026356 184 LMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKH--GKEKHIIETI 233 (240)
Q Consensus 184 ~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~c~ 233 (240)
.+. ....++.|+.++++.+.+... ....+ ..++. ++.|++.++|
T Consensus 155 ~~~--~~~~l~~L~~L~L~~N~l~~l-~~~~~---~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 155 LIK--DGNKLPKLMLLDLSSNKLKKL-PLTDL---QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp GTC------CTTCCEEECCSSCCCCC-CHHHH---HHSCHHHHTTEECCSSC
T ss_pred Hhc--CcccCCcCCEEECCCCCCCcc-CHHHh---hhccHhhcceEEecCCC
Confidence 000 114578899999999988865 22222 34454 4778877654
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.85 E-value=6.3e-06 Score=74.46 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=25.8
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC 88 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c 88 (240)
.|++++|.... +.. .+++|+.|+++++ .++. .+..+++|++|+++++
T Consensus 65 ~L~L~~N~l~~------lp~-~l~~L~~L~Ls~N-~l~~---------lp~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 65 TLVIPDNNLTS------LPA-LPPELRTLEVSGN-QLTS---------LPVLPPGLLELSIFSN 111 (622)
T ss_dssp EEEECSCCCSC------CCC-CCTTCCEEEECSC-CCSC---------CCCCCTTCCEEEECSC
T ss_pred EEEecCCCCCC------CCC-cCCCCCEEEcCCC-cCCc---------CCCCCCCCCEEECcCC
Confidence 37777776321 111 4567777777773 3442 1123366666666664
No 127
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.74 E-value=5.5e-07 Score=84.17 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=66.3
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHH-HHh
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI-ISS 101 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-l~~ 101 (240)
.+.|++++|.....-... .+.++++|+.|+++++ .+....-.. ...+++|++|++++| .+++..... ...
T Consensus 50 L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N-~l~~~~p~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSS-KIYFLHPDA-----FQGLFHLFELRLYFC-GLSDAVLKDGYFR 120 (844)
T ss_dssp CSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTC-CCCEECTTS-----SCSCSSCCCEECTTC-CCSSCCSTTCCCS
T ss_pred CeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCC-cCcccCHhH-----ccCCcccCEeeCcCC-CCCcccccCcccc
Confidence 344888888543321111 2347888999999884 454322111 245688888888886 555322111 112
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCC
Q 026356 102 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL 144 (240)
Q Consensus 102 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~lt 144 (240)
.+++|++|+++++ .++..........+++|++|+++++ .++
T Consensus 121 ~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~ 161 (844)
T 3j0a_A 121 NLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIF 161 (844)
T ss_dssp SCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCC
T ss_pred ccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCC
Confidence 4788888888877 4443322223357788888888887 454
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.74 E-value=4.5e-06 Score=74.64 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK 127 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 127 (240)
..|+.|++++ +.++.. ..+ ..+++|+.|+++++ .++.- -..+ ..+++|+.|+++++ .++. +. -..
T Consensus 441 ~~L~~L~Ls~-n~l~~l--p~~-----~~l~~L~~L~Ls~N-~l~~l-p~~~-~~l~~L~~L~Ls~N-~l~~--lp-~l~ 505 (567)
T 1dce_A 441 ADVRVLHLAH-KDLTVL--CHL-----EQLLLVTHLDLSHN-RLRAL-PPAL-AALRCLEVLQASDN-ALEN--VD-GVA 505 (567)
T ss_dssp TTCSEEECTT-SCCSSC--CCG-----GGGTTCCEEECCSS-CCCCC-CGGG-GGCTTCCEEECCSS-CCCC--CG-GGT
T ss_pred cCceEEEecC-CCCCCC--cCc-----cccccCcEeecCcc-ccccc-chhh-hcCCCCCEEECCCC-CCCC--Cc-ccC
Confidence 3588888888 456542 111 33478888998885 55521 0122 25888899999877 4553 22 234
Q ss_pred cCCcCCEEeccCCCCCCHHH-HHHHHHhCCCCcEEeccCCCCCC
Q 026356 128 NCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRYVNMI 170 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~ltd~~-l~~l~~~~~~L~~L~l~~c~~it 170 (240)
.+++|+.|+++++ .++... ...+ ..+++|+.|+++++ .++
T Consensus 506 ~l~~L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N-~l~ 546 (567)
T 1dce_A 506 NLPRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGN-SLC 546 (567)
T ss_dssp TCSSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTS-GGG
T ss_pred CCCCCcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCC-cCC
Confidence 6788999999888 676542 2223 35888999999885 443
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.69 E-value=3.7e-07 Score=70.03 Aligned_cols=126 Identities=16% Similarity=0.165 Sum_probs=75.2
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.++++++.... +...-..+|+.|++++ +.+.......+ ...+++|++|+++++ .++...-..+ ..+
T Consensus 11 ~~l~~s~~~l~~------ip~~~~~~l~~L~l~~-n~i~~~~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKE------IPRDIPLHTTELLLND-NELGRISSDGL----FGRLPHLVKLELKRN-QLTGIEPNAF-EGA 77 (192)
T ss_dssp TEEECTTSCCSS------CCSCCCTTCSEEECCS-CCCCSBCCSCS----GGGCTTCCEEECCSS-CCCCBCTTTT-TTC
T ss_pred CEEEcCCCCcCc------CccCCCCCCCEEECCC-CcCCccCCccc----cccCCCCCEEECCCC-CCCCcCHhHc-CCc
Confidence 456777665211 1111234789999998 45543221111 123588999999984 6654211222 247
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
++|++|+++++ .++...... ...+++|+.|+++++ .++......+ ..+++|+.|+++++
T Consensus 78 ~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 78 SHIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDN-QISCVMPGSF-EHLNSLTSLNLASN 136 (192)
T ss_dssp TTCCEEECCSC-CCCEECSSS-STTCTTCCEEECCSS-CCCEECTTSS-TTCTTCCEEECTTC
T ss_pred ccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCC-cCCeeCHHHh-hcCCCCCEEEeCCC
Confidence 88999999987 454322111 235789999999999 6764322222 34788999999985
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.68 E-value=1.5e-05 Score=72.04 Aligned_cols=37 Identities=0% Similarity=-0.176 Sum_probs=20.7
Q ss_pred CccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 193 IRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 193 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
++.|+.++++.+.+... . ..+ ..+++|+.|++.+++-
T Consensus 260 ~~~L~~L~Ls~N~L~~l-p--~~l--~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTRL-P--ESL--IHLSSETTVNLEGNPL 296 (622)
T ss_dssp CTTCCEEECCSSCCCSC-C--GGG--GGSCTTCEEECCSCCC
T ss_pred cccCcEEeCCCCCCCcC-C--HHH--hhccccCEEEecCCCC
Confidence 34566666666665532 1 112 4566777777766653
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.61 E-value=2.5e-06 Score=76.27 Aligned_cols=33 Identities=3% Similarity=-0.249 Sum_probs=17.5
Q ss_pred eeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356 197 QAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK 234 (240)
Q Consensus 197 ~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 234 (240)
+.++++.+.+...- ..+ ..+++|+.|++.+++-
T Consensus 210 ~~L~Ls~N~l~~lp---~~l--~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 210 IFFRCRENRITHIP---ENI--LSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEEECCSSCCCCCC---GGG--GGSCTTEEEECCSSSC
T ss_pred eEEecCCCcceecC---HHH--hcCCCCCEEEeeCCcC
Confidence 66666666555321 111 2366677776666553
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.55 E-value=3.5e-06 Score=64.62 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=71.4
Q ss_pred CCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 026356 47 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV 126 (240)
Q Consensus 47 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 126 (240)
.++|+.|++++ +.++... .. ...+++|+.|+++++ .++...-..+ ..+++|++|+++++ .++...... .
T Consensus 30 ~~~l~~L~L~~-n~i~~ip-~~-----~~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~-f 98 (193)
T 2wfh_A 30 PRDVTELYLDG-NQFTLVP-KE-----LSNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRT-F 98 (193)
T ss_dssp CTTCCEEECCS-SCCCSCC-GG-----GGGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTT-T
T ss_pred CCCCCEEECCC-CcCchhH-HH-----hhcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHHH-h
Confidence 35799999998 5565321 11 234588999999984 6654222222 24788999999887 444322111 2
Q ss_pred HcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHH
Q 026356 127 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLF 175 (240)
Q Consensus 127 ~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~ 175 (240)
..+++|+.|+++++ .++..... ....+++|+.|+++++.-..+..+.
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 99 DGLKSLRLLSLHGN-DISVVPEG-AFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCCEEECCCC-CCCeeChh-hhhcCccccEEEeCCCCeecCCcCH
Confidence 46789999999998 67632211 1234788999999885333343333
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.55 E-value=2.1e-05 Score=70.25 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=50.7
Q ss_pred CccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCC
Q 026356 79 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 158 (240)
Q Consensus 79 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L 158 (240)
.|+.|+++++ .++. +..+ ..+++|+.|+++++ .++ .+......+++|+.|+++++ .++. +..+ ..+++|
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~~-~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l-~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCHL-EQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALEN--VDGV-ANLPRL 510 (567)
T ss_dssp TCSEEECTTS-CCSS--CCCG-GGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGGG-TTCSSC
T ss_pred CceEEEecCC-CCCC--CcCc-cccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCC--Cccc-CCCCCC
Confidence 4566666663 4433 1111 23556666666655 343 11112235566666666666 4543 1122 235666
Q ss_pred cEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356 159 ESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD 208 (240)
Q Consensus 159 ~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~ 208 (240)
+.|+++++ .++.... +. .+.+++.|+.++++.+.+..
T Consensus 511 ~~L~Ls~N-~l~~~~~-------p~-----~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 511 QELLLCNN-RLQQSAA-------IQ-----PLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CEEECCSS-CCCSSST-------TG-----GGGGCTTCCEEECTTSGGGG
T ss_pred cEEECCCC-CCCCCCC-------cH-----HHhcCCCCCEEEecCCcCCC
Confidence 66666663 4432100 11 23445566666666555543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.53 E-value=4.9e-06 Score=62.58 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=67.3
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
..++|+.|++++ +.+....... ...+++|+.|+++++ .++...-..+ ..+++|++|+++++ .++.... ..
T Consensus 26 ~~~~l~~L~l~~-n~l~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~-~~ 95 (177)
T 2o6r_A 26 IPSSATRLELES-NKLQSLPHGV-----FDKLTQLTKLSLSQN-QIQSLPDGVF-DKLTKLTILYLHEN-KLQSLPN-GV 95 (177)
T ss_dssp CCTTCSEEECCS-SCCCCCCTTT-----TTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TT
T ss_pred CCCCCcEEEeCC-CcccEeCHHH-----hcCcccccEEECCCC-cceEeChhHc-cCCCccCEEECCCC-CccccCH-HH
Confidence 346789999988 4455321111 234588999999885 5553211111 25788999999876 4542211 12
Q ss_pred HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
...+++|+.|+++++ .++.... .+...+++|+.|+++++
T Consensus 96 ~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 96 FDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred hhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCC
Confidence 245678999999988 6663221 12235788999999885
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.52 E-value=1.6e-05 Score=69.08 Aligned_cols=12 Identities=25% Similarity=0.058 Sum_probs=6.0
Q ss_pred CCCCCEEEecCC
Q 026356 103 CPELKVFSIYWN 114 (240)
Q Consensus 103 ~~~L~~L~l~~~ 114 (240)
+++|++|+++++
T Consensus 236 l~~L~~L~l~~N 247 (454)
T 1jl5_A 236 LPFLTTIYADNN 247 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 444555555544
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.41 E-value=9.5e-06 Score=62.17 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=72.6
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 157 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~ 157 (240)
++|+.|++++. .++.-. .. ...+++|+.|+++++ .++...-.. ...+++|++|+++++ .++......+ ..+++
T Consensus 31 ~~l~~L~L~~n-~i~~ip-~~-~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP-KE-LSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYN-RLRCIPPRTF-DGLKS 103 (193)
T ss_dssp TTCCEEECCSS-CCCSCC-GG-GGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCBCCTTTT-TTCTT
T ss_pred CCCCEEECCCC-cCchhH-HH-hhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCC-ccCEeCHHHh-CCCCC
Confidence 68999999994 665321 22 235889999999987 454322111 246789999999999 6764332222 35789
Q ss_pred CcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356 158 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG 207 (240)
Q Consensus 158 L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~ 207 (240)
|+.|+++++ .++.. ..-.+.+++.|+.++++.+.+.
T Consensus 104 L~~L~L~~N-~l~~~-------------~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 104 LRLLSLHGN-DISVV-------------PEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSS-CCCBC-------------CTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCC-CCCee-------------ChhhhhcCccccEEEeCCCCee
Confidence 999999994 55521 1113456778889999877664
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.39 E-value=3.1e-06 Score=64.75 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=83.5
Q ss_pred CceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 026356 50 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNC 129 (240)
Q Consensus 50 L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 129 (240)
-+.+++++ +.++.. .. ....+++.|++++. .++..........+++|++|+++++ .++...-. ....+
T Consensus 10 ~~~l~~s~-~~l~~i-----p~---~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l 77 (192)
T 1w8a_A 10 GTTVDCTG-RGLKEI-----PR---DIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-AFEGA 77 (192)
T ss_dssp TTEEECTT-SCCSSC-----CS---CCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-TTTTC
T ss_pred CCEEEcCC-CCcCcC-----cc---CCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHh-HcCCc
Confidence 36778777 444321 11 12258999999995 6654222112235899999999987 55432111 22467
Q ss_pred CcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCch
Q 026356 130 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH 209 (240)
Q Consensus 130 ~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~ 209 (240)
++|+.|+++++ .++......+ ..+++|+.|+++++ .++... +. .+..++.|+.++++.+.+...
T Consensus 78 ~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~--------~~-----~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 78 SHIQELQLGEN-KIKEISNKMF-LGLHQLKTLNLYDN-QISCVM--------PG-----SFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTCCEEECCSC-CCCEECSSSS-TTCTTCCEEECCSS-CCCEEC--------TT-----SSTTCTTCCEEECTTCCBCCS
T ss_pred ccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCC-cCCeeC--------HH-----HhhcCCCCCEEEeCCCCccCc
Confidence 89999999999 6765332222 34789999999995 665410 11 335677889999988777644
No 138
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.37 E-value=7.1e-05 Score=64.98 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred cccchhhhhhhhh
Q 026356 222 KHGKEKHIIETIK 234 (240)
Q Consensus 222 ~~L~~L~l~~c~~ 234 (240)
++|+.|++++++-
T Consensus 396 ~~L~~L~ls~N~l 408 (454)
T 1jl5_A 396 QNLKQLHVETNPL 408 (454)
T ss_dssp -------------
T ss_pred CcCCEEECCCCcC
Confidence 6777777777654
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.34 E-value=2.2e-05 Score=58.95 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=82.8
Q ss_pred CCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 026356 49 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN 128 (240)
Q Consensus 49 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 128 (240)
..+.+++++ +.+.... ....++|+.|+++++ .++...-..+ ..+++|++|+++++ .++...- .....
T Consensus 8 ~~~~l~~~~-~~l~~~p--------~~~~~~l~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~~ 74 (177)
T 2o6r_A 8 SGTEIRCNS-KGLTSVP--------TGIPSSATRLELESN-KLQSLPHGVF-DKLTQLTKLSLSQN-QIQSLPD-GVFDK 74 (177)
T ss_dssp ETTEEECCS-SCCSSCC--------TTCCTTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCT-TTTTT
T ss_pred CCCEEEecC-CCCccCC--------CCCCCCCcEEEeCCC-cccEeCHHHh-cCcccccEEECCCC-cceEeCh-hHccC
Confidence 356677666 3343311 112378999999995 5653221112 35789999999987 5542211 12246
Q ss_pred CCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356 129 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD 208 (240)
Q Consensus 129 ~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~ 208 (240)
+++|+.|+++++ .++..... ....+++|+.|+++++ .++.. + .-.+.+++.|+.++++.+.+..
T Consensus 75 l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~---------~----~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLPNG-VFDKLTQLKELALDTN-QLKSV---------P----DGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCC---------C----TTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccCEEECCCC-CccccCHH-HhhCCcccCEEECcCC-cceEe---------C----HHHhcCCcccCEEEecCCCeec
Confidence 789999999999 67642221 1235789999999995 66521 0 0023567889999998887765
Q ss_pred h
Q 026356 209 H 209 (240)
Q Consensus 209 ~ 209 (240)
.
T Consensus 139 ~ 139 (177)
T 2o6r_A 139 S 139 (177)
T ss_dssp C
T ss_pred c
Confidence 4
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.31 E-value=2.7e-05 Score=71.60 Aligned_cols=82 Identities=20% Similarity=0.119 Sum_probs=36.0
Q ss_pred CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356 76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 155 (240)
Q Consensus 76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~ 155 (240)
.+++|+.|+++++ .+..-. ..+. .+++|++|+|+++ .++ .+..-...+++|+.|+++++ .++. +..-...+
T Consensus 222 ~l~~L~~L~Ls~n-~l~~l~-~~~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l 292 (727)
T 4b8c_D 222 DDQLWHALDLSNL-QIFNIS-ANIF-KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLTS--LPAELGSC 292 (727)
T ss_dssp CCCCCCEEECTTS-CCSCCC-GGGG-GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCSS--CCSSGGGG
T ss_pred cCCCCcEEECCCC-CCCCCC-hhhc-CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCCc--cChhhcCC
Confidence 3455666666653 332100 0111 3555666666554 333 11111234556666666665 4441 11111235
Q ss_pred CCCcEEeccCC
Q 026356 156 QELESLNLTRY 166 (240)
Q Consensus 156 ~~L~~L~l~~c 166 (240)
++|+.|+|+++
T Consensus 293 ~~L~~L~L~~N 303 (727)
T 4b8c_D 293 FQLKYFYFFDN 303 (727)
T ss_dssp TTCSEEECCSS
T ss_pred CCCCEEECCCC
Confidence 55666666553
No 141
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.21 E-value=9.1e-05 Score=66.18 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=80.2
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 104 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 104 (240)
.|+++++...+ +. ..-+++|+.|++++ +.++... ..+++|+.|+++++ .++. +.. ...
T Consensus 63 ~L~Ls~n~L~~---lp---~~l~~~L~~L~Ls~-N~l~~ip---------~~l~~L~~L~Ls~N-~l~~--ip~---l~~ 120 (571)
T 3cvr_A 63 ELQLNRLNLSS---LP---DNLPPQITVLEITQ-NALISLP---------ELPASLEYLDACDN-RLST--LPE---LPA 120 (571)
T ss_dssp EEECCSSCCSC---CC---SCCCTTCSEEECCS-SCCSCCC---------CCCTTCCEEECCSS-CCSC--CCC---CCT
T ss_pred EEEeCCCCCCc---cC---HhHcCCCCEEECcC-CCCcccc---------cccCCCCEEEccCC-CCCC--cch---hhc
Confidence 47777665221 11 11235677777777 4454211 22467777777774 5543 111 122
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356 105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL 184 (240)
Q Consensus 105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~ 184 (240)
+|++|+++++ .++. +.. .+++|+.|+++++ .++.. . ..+++|+.|++++| .++. + +.
T Consensus 121 ~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~l--p---~~l~~L~~L~Ls~N-~L~~--l-------p~- 177 (571)
T 3cvr_A 121 SLKHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTML--P---ELPTSLEVLSVRNN-QLTF--L-------PE- 177 (571)
T ss_dssp TCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSCC--C---CCCTTCCEEECCSS-CCSC--C-------CC-
T ss_pred CCCEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCcC--C---CcCCCcCEEECCCC-CCCC--c-------ch-
Confidence 6777777766 3432 111 4667777777777 55531 1 13567777887774 4433 0 00
Q ss_pred hhHHHhcCCccceeecccCCCCCchhHHHHHHH--hhcccccchhhhhhhh
Q 026356 185 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIE--TNTYKHGKEKHIIETI 233 (240)
Q Consensus 185 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~c~ 233 (240)
+. +.|+.++++.+.+..... +.. ....+.|+.|+++++.
T Consensus 178 -----l~--~~L~~L~Ls~N~L~~lp~---~~~~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 178 -----LP--ESLEALDVSTNLLESLPA---VPVRNHHSEETEIFFRCRENR 218 (571)
T ss_dssp -----CC--TTCCEEECCSSCCSSCCC---CC--------CCEEEECCSSC
T ss_pred -----hh--CCCCEEECcCCCCCchhh---HHHhhhcccccceEEecCCCc
Confidence 01 567788888777764311 110 0112223788777653
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.18 E-value=0.00056 Score=55.05 Aligned_cols=62 Identities=29% Similarity=0.359 Sum_probs=30.2
Q ss_pred hcCCCCCEEEecCCCCCCH-HHHHHHHHcCCcCCEEeccCCCCCCHH-HHHHHHHhCCCCcEEeccCC
Q 026356 101 STCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 101 ~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~c~~ltd~-~l~~l~~~~~~L~~L~l~~c 166 (240)
..+++|++|+++++ .++. .++..+...+++|+.|+++++ .+++. .+..+. .. +|+.|+++++
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N 230 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN 230 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC
Confidence 45566666666655 3332 223333445566666666666 45432 122111 12 5666666663
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.03 E-value=5e-05 Score=69.86 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=74.4
Q ss_pred hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356 45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH 124 (240)
Q Consensus 45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 124 (240)
..++.|+.|+++++ .+....-. + ..+++|++|+|+++ .++.- -..+ ..+++|+.|+|+++ .++ .+..
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~-~-----~~l~~L~~L~Ls~N-~l~~l-p~~~-~~l~~L~~L~Ls~N-~l~--~lp~ 287 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISAN-I-----FKYDFLTRLYLNGN-SLTEL-PAEI-KNLSNLRVLDLSHN-RLT--SLPA 287 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGG-G-----GGCCSCSCCBCTTS-CCSCC-CGGG-GGGTTCCEEECTTS-CCS--SCCS
T ss_pred ccCCCCcEEECCCC-CCCCCChh-h-----cCCCCCCEEEeeCC-cCccc-Chhh-hCCCCCCEEeCcCC-cCC--ccCh
Confidence 46788999999984 45421111 1 13589999999995 66621 1123 35899999999987 565 2222
Q ss_pred HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHH
Q 026356 125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL 172 (240)
Q Consensus 125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~ 172 (240)
-...+++|+.|++++| .++.-.- . ...+++|+.|+|+++ .++..
T Consensus 288 ~~~~l~~L~~L~L~~N-~l~~lp~-~-~~~l~~L~~L~L~~N-~l~~~ 331 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDN-MVTTLPW-E-FGNLCNLQFLGVEGN-PLEKQ 331 (727)
T ss_dssp SGGGGTTCSEEECCSS-CCCCCCS-S-TTSCTTCCCEECTTS-CCCSH
T ss_pred hhcCCCCCCEEECCCC-CCCccCh-h-hhcCCCccEEeCCCC-ccCCC
Confidence 2356789999999999 6763211 1 245889999999995 66643
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.72 E-value=0.0014 Score=52.79 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=54.6
Q ss_pred CCCccEEecCCCCCCcH-HHHHHHHhcCCCCCEEEecCCCCCCHH-HHHHHHHcCCcCCEEeccCCCCCCH------HHH
Q 026356 77 LQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLD------KSL 148 (240)
Q Consensus 77 ~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~c~~ltd------~~l 148 (240)
+++|+.|++++ +.++. .++..+...+++|+.|+|+++ .+++. .+..+. .+ +|++|+++++ .++. ...
T Consensus 169 l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~~~~~y~ 243 (267)
T 3rw6_A 169 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN-SLCDTFRDQSTYI 243 (267)
T ss_dssp CTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCSSHHHHH
T ss_pred CCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC-cCccccCcchhHH
Confidence 48889999888 46654 123333446889999999877 56543 232222 23 8999999998 4653 223
Q ss_pred HHHHHhCCCCcEEeccC
Q 026356 149 QLIADNYQELESLNLTR 165 (240)
Q Consensus 149 ~~l~~~~~~L~~L~l~~ 165 (240)
..+...+|+|+.||-..
T Consensus 244 ~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHHHCTTCCEESSCB
T ss_pred HHHHHHCcccCeECCcC
Confidence 34556789999988543
No 145
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.65 E-value=6.4e-06 Score=68.98 Aligned_cols=32 Identities=3% Similarity=0.057 Sum_probs=20.6
Q ss_pred EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCC
Q 026356 25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQ 59 (240)
Q Consensus 25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~ 59 (240)
.|+|++|.. .. +..-.+..+++|++|+++++.
T Consensus 34 ~L~Ls~N~i-~~--i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 34 ELRFVLTKL-RV--IQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp EEEEESCCC-SE--ECTTSSTTCTTCCEEEEECCT
T ss_pred EEEccCCcC-CC--cCHHHHcCCCCCCEEECcCCC
Confidence 488888873 21 222223478889999999853
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.62 E-value=0.00014 Score=54.40 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=43.7
Q ss_pred CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356 78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE 157 (240)
Q Consensus 78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~ 157 (240)
++|+.|++++. .++...-..+ ..+++|++|+++++ .++... ......+++|+.|+++++ .++...-. ....+++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVF-DRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDN-QLKSIPRG-AFDNLKS 103 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred CCCcEEEcCCC-cCCccChhhh-cCcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCC-ccCEeCHH-HhcCCCC
Confidence 55666666663 4433211111 13666777777765 343211 111245677788888777 55532111 1234678
Q ss_pred CcEEeccCC
Q 026356 158 LESLNLTRY 166 (240)
Q Consensus 158 L~~L~l~~c 166 (240)
|+.|+++++
T Consensus 104 L~~L~L~~N 112 (170)
T 3g39_A 104 LTHIWLLNN 112 (170)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeCCC
Confidence 888888874
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.50 E-value=0.00016 Score=54.25 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=30.5
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
+++|+.|+++++ .++.-. ......+++|+.|+++++ .++...- .....+++|+.|+++++
T Consensus 56 l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 56 LVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDN-HLKSIPR-GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS
T ss_pred CcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCC-ccceeCH-HHhccccCCCEEEeCCC
Confidence 555666666554 333210 011234567777777776 4542111 11134677777777774
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.46 E-value=0.00019 Score=53.54 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=64.0
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.++++++.... +...-.++|+.|++++ +.+....-.. ...+++|+.|++++. .++...- .....+
T Consensus 12 ~~l~~s~n~l~~------ip~~~~~~l~~L~L~~-N~i~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l 77 (170)
T 3g39_A 12 TTVDCSGKSLAS------VPTGIPTTTQVLYLYD-NQITKLEPGV-----FDRLTQLTRLDLDNN-QLTVLPA-GVFDKL 77 (170)
T ss_dssp TEEECTTSCCSS------CCSCCCTTCSEEECCS-SCCCCCCTTT-----TTTCTTCSEEECCSS-CCCCCCT-TTTTTC
T ss_pred CEEEeCCCCcCc------cCccCCCCCcEEEcCC-CcCCccChhh-----hcCcccCCEEECCCC-CcCccCh-hhccCC
Confidence 357777776321 1111246899999998 5565432211 245689999999994 6653221 112358
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCC
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK 141 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~ 141 (240)
++|++|+++++ .++...- .....+++|+.|++++++
T Consensus 78 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 78 TQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence 89999999987 4542111 123467899999999984
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.17 E-value=0.00062 Score=51.00 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=64.2
Q ss_pred eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356 24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103 (240)
Q Consensus 24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~ 103 (240)
+.++++++.... +...-.++|+.|++++ +.+....-.. ...+++|+.|++++. .++.-.- .+...+
T Consensus 15 ~~l~~~~n~l~~------iP~~~~~~L~~L~Ls~-N~l~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLAS------VPAGIPTDKQRLWLNN-NQITKLEPGV-----FDHLVNLQQLYFNSN-KLTAIPT-GVFDKL 80 (174)
T ss_dssp SEEECCSSCCSS------CCSCCCTTCSEEECCS-SCCCCCCTTT-----TTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred cEEEeCCCCCCc------cCCCcCCCCcEEEeCC-CCccccCHHH-----hcCCcCCCEEECCCC-CCCccCh-hHhCCc
Confidence 457787776311 1111237899999998 5565432111 245689999999994 6654211 112358
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCC
Q 026356 104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK 141 (240)
Q Consensus 104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~ 141 (240)
++|++|+++++ .++... ......+++|+.|++++++
T Consensus 81 ~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDN-HLKSIP-RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC
T ss_pred chhhEEECCCC-ccceeC-HHHhccccCCCEEEeCCCC
Confidence 89999999987 454211 1123467899999999994
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.07 E-value=0.0004 Score=57.36 Aligned_cols=36 Identities=8% Similarity=-0.098 Sum_probs=19.4
Q ss_pred HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhh
Q 026356 189 IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKH 228 (240)
Q Consensus 189 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 228 (240)
.+.+|+.|+.++++.+.+.... ...+ .+|++|+.++
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~--~~aF--~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLG--DELF--GNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEEC--TTTT--CTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCccCccc--hhhh--cCCcchhhhc
Confidence 4566777777776555444331 1122 4566666654
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.31 E-value=0.0016 Score=53.76 Aligned_cols=102 Identities=18% Similarity=0.265 Sum_probs=57.0
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCC--CCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC--QKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL 125 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c--~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 125 (240)
.+++.+.+.+ .+....+..+...| ++|+.++++++ ..+.+.++ ..|++|++|++.++ ++.-+-..
T Consensus 202 ~~~~~l~~~~--~l~~~~~~~l~~~~----~~L~~l~L~~n~i~~I~~~aF----~~~~~L~~l~l~~n--i~~I~~~a- 268 (329)
T 3sb4_A 202 RDINFLTIEG--KLDNADFKLIRDYM----PNLVSLDISKTNATTIPDFTF----AQKKYLLKIKLPHN--LKTIGQRV- 268 (329)
T ss_dssp GGCSEEEEEE--CCCHHHHHHHHHHC----TTCCEEECTTBCCCEECTTTT----TTCTTCCEEECCTT--CCEECTTT-
T ss_pred cccceEEEee--eecHHHHHHHHHhc----CCCeEEECCCCCcceecHhhh----hCCCCCCEEECCcc--cceehHHH-
Confidence 3455555554 36666666666555 78888888773 22233222 24778888888653 32211111
Q ss_pred HHcCCcCC-EEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 126 VKNCKHII-DLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 126 ~~~~~~L~-~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
..+|++|+ .+++.+ .++.-+-. .+.+|++|+.+++..
T Consensus 269 F~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATG 306 (329)
T ss_dssp TTTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECS
T ss_pred hhCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCC
Confidence 24677788 887765 23321111 113578888888765
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.19 E-value=0.0015 Score=54.22 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=32.0
Q ss_pred hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCC
Q 026356 45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 114 (240)
Q Consensus 45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~ 114 (240)
..+.+|+.|+|++.+.+....-.. ...+++|+.|+|++. .++...-..+ ..+++|+.|+|+++
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~-----~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFN 90 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSS
T ss_pred CCCCCeeEEEccCCCCCCCcChhH-----hccccCCCEEECCCC-ccceeCHHHh-cCCcCCCEEeCCCC
Confidence 356667777777434444321111 234566777777763 4443111111 23666666666655
No 153
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.12 E-value=0.00016 Score=60.45 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=28.2
Q ss_pred CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCC
Q 026356 23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC 88 (240)
Q Consensus 23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c 88 (240)
.+.|+|++|...+. +..-.+..+++++++.+..++++....-. ....+++|+.|+++++
T Consensus 56 L~~L~Ls~N~i~~~--i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-----~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 56 LEKIEISQNDVLEV--IEADVFSNLPKLHEIRIEKANNLLYINPE-----AFQNLPNLQYLLISNT 114 (350)
T ss_dssp CCEEEEECCTTCCE--ECTTSBCSCTTCCEEEEEEETTCCEECTT-----SBCCCTTCCEEEEEEE
T ss_pred CCEEECcCCCCCCc--cChhHhhcchhhhhhhcccCCcccccCch-----hhhhcccccccccccc
Confidence 33488888874331 11111235556555444433444332111 1244567777777663
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.76 E-value=0.0038 Score=51.63 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=48.0
Q ss_pred CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356 76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY 155 (240)
Q Consensus 76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~ 155 (240)
.+++|+.|+|++.+.++...-..+ ..+++|+.|+|+++ .++...-. ....+++|+.|+++++ .++...-. +....
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~~ 103 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLSWK-TVQGL 103 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCCST-TTCSC
T ss_pred CCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-ccceeCHH-HcccC
Confidence 346788888875345543211112 24778888888876 45432111 2246778888888888 56532111 11122
Q ss_pred CCCcEEeccCC
Q 026356 156 QELESLNLTRY 166 (240)
Q Consensus 156 ~~L~~L~l~~c 166 (240)
.|+.|++.++
T Consensus 104 -~L~~l~l~~N 113 (347)
T 2ifg_A 104 -SLQELVLSGN 113 (347)
T ss_dssp -CCCEEECCSS
T ss_pred -CceEEEeeCC
Confidence 3888888874
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=91.02 E-value=0.00075 Score=57.57 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=6.3
Q ss_pred hCCCCcEEeccC
Q 026356 154 NYQELESLNLTR 165 (240)
Q Consensus 154 ~~~~L~~L~l~~ 165 (240)
+|++|+.+.+.+
T Consensus 269 ~c~~L~~l~l~~ 280 (401)
T 4fdw_A 269 YCPELAEVTTYG 280 (401)
T ss_dssp TCTTCCEEEEES
T ss_pred CCCCCCEEEeCC
Confidence 355555555544
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.16 E-value=0.34 Score=40.64 Aligned_cols=78 Identities=12% Similarity=0.319 Sum_probs=37.2
Q ss_pred CCCCccEEecCCC-CCCcHHHHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHHHcCCcCCEEeccCC-CCCCHHHHHHHH
Q 026356 76 SLQDLESLNLNGC-QKISDKGIEIISSTCPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQLIA 152 (240)
Q Consensus 76 ~~~~L~~L~l~~c-~~l~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~c-~~ltd~~l~~l~ 152 (240)
.++.|+.+.+..- ..+.+.++ ..|.+|+++.+... ..+.+.+ ..+|.+|+++.+... ..|.+.++
T Consensus 286 ~c~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~aF---- 353 (394)
T 4gt6_A 286 NCPALQDIEFSSRITELPESVF----AGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPESAF---- 353 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGGGG----
T ss_pred cccccccccCCCcccccCceee----cCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHhHh----
Confidence 3466666666431 12222222 24666777766432 1222221 235666777766432 22322222
Q ss_pred HhCCCCcEEeccC
Q 026356 153 DNYQELESLNLTR 165 (240)
Q Consensus 153 ~~~~~L~~L~l~~ 165 (240)
.+|++|+.+++.+
T Consensus 354 ~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 354 SNCTALNNIEYSG 366 (394)
T ss_dssp TTCTTCCEEEESS
T ss_pred hCCCCCCEEEECC
Confidence 3466777776665
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=67.00 E-value=0.2 Score=42.52 Aligned_cols=101 Identities=12% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCC-------CcHHHHHHHHhcCCCCCEEEecCCCCCCHH
Q 026356 48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQK-------ISDKGIEIISSTCPELKVFSIYWNVRVTDI 120 (240)
Q Consensus 48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~-------l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 120 (240)
.+|+.+.+.. ++... .......+++|+.+.+.+... +.+.++ ..|++|+.+.+.. .++.-
T Consensus 248 ~~L~~i~lp~--~i~~I-----~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF----~~c~~L~~l~l~~--~i~~I 314 (401)
T 4fdw_A 248 SGITTVKLPN--GVTNI-----ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL----EGCPKLARFEIPE--SIRIL 314 (401)
T ss_dssp CCCSEEEEET--TCCEE-----CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT----TTCTTCCEECCCT--TCCEE
T ss_pred CCccEEEeCC--CccEE-----ChhHhhCCCCCCEEEeCCccccCCcccEECHHHh----hCCccCCeEEeCC--ceEEE
Confidence 6788888864 33322 122235568999999977311 333333 3689999999974 23322
Q ss_pred HHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356 121 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY 166 (240)
Q Consensus 121 ~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c 166 (240)
+-.. ..+|++|+.+.+... ++.-+-.+ ..+| +|+.+.+.+.
T Consensus 315 ~~~a-F~~c~~L~~l~lp~~--l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 315 GQGL-LGGNRKVTQLTIPAN--VTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTT-TTTCCSCCEEEECTT--CCEECTTS-SSSS-CCCEEEECCS
T ss_pred hhhh-hcCCCCccEEEECcc--ccEEcHHh-CCCC-CCCEEEEcCC
Confidence 2222 247889999999654 43211111 1357 8999999874
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=66.38 E-value=1.6 Score=36.43 Aligned_cols=100 Identities=16% Similarity=0.332 Sum_probs=54.4
Q ss_pred cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCC-CCCCcHHHHHHHHhcCCCCCEEEecCC-CCCCHHHHH
Q 026356 46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG-CQKISDKGIEIISSTCPELKVFSIYWN-VRVTDIGIQ 123 (240)
Q Consensus 46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~-c~~l~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~~~ 123 (240)
.+++|+.+.+.. .+.. +...+...|.+|+.+.+.. ...+.+.++ ..|.+|+++.+... ..+.+.+
T Consensus 286 ~c~~L~~i~l~~--~i~~-----I~~~aF~~c~~L~~i~lp~~v~~I~~~aF----~~C~~L~~i~ip~sv~~I~~~a-- 352 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITE-----LPESVFAGCISLKSIDIPEGITQILDDAF----AGCEQLERIAIPSSVTKIPESA-- 352 (394)
T ss_dssp TCTTCCEEECCT--TCCE-----ECTTTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEECTTCCBCCGGG--
T ss_pred cccccccccCCC--cccc-----cCceeecCCCCcCEEEeCCcccEehHhHh----hCCCCCCEEEECcccCEEhHhH--
Confidence 556666666653 2222 2222335568999999965 223334333 26999999999642 2343332
Q ss_pred HHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356 124 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165 (240)
Q Consensus 124 ~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~ 165 (240)
..+|++|+++++.+. .. .... ...+.+|+.+.+..
T Consensus 353 --F~~C~~L~~i~~~~~-~~---~~~~-~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 353 --FSNCTALNNIEYSGS-RS---QWNA-ISTDSGLQNLPVAP 387 (394)
T ss_dssp --GTTCTTCCEEEESSC-HH---HHHT-CBCCCCC-------
T ss_pred --hhCCCCCCEEEECCc-ee---ehhh-hhccCCCCEEEeCC
Confidence 258999999999876 21 1111 13467788877654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=64.04 E-value=0.23 Score=41.27 Aligned_cols=32 Identities=13% Similarity=0.347 Sum_probs=15.8
Q ss_pred cCCcCCEEeccCCCCCC---HHHHHHHHHhCCCCcEEecc
Q 026356 128 NCKHIIDLNLSGCKNLL---DKSLQLIADNYQELESLNLT 164 (240)
Q Consensus 128 ~~~~L~~L~l~~c~~lt---d~~l~~l~~~~~~L~~L~l~ 164 (240)
.|++|+.+.+.++ .++ +.++ .+|.+|+.+.+.
T Consensus 284 ~c~~L~~i~l~~~-~i~~I~~~aF----~~c~~L~~i~lp 318 (379)
T 4h09_A 284 GCSNLTKVVMDNS-AIETLEPRVF----MDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCT-TCCEECTTTT----TTCTTCCEEECC
T ss_pred ccccccccccccc-ccceehhhhh----cCCCCCCEEEcC
Confidence 5566666666543 222 2211 245666666664
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=50.74 E-value=4.1 Score=28.32 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=5.0
Q ss_pred CcCCEEeccCCC
Q 026356 130 KHIIDLNLSGCK 141 (240)
Q Consensus 130 ~~L~~L~l~~c~ 141 (240)
++|+.|++++++
T Consensus 55 ~~L~~L~L~~NP 66 (130)
T 3rfe_A 55 PALRTAHLGANP 66 (130)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEEecCCC
Confidence 344444444443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=22.11 E-value=7.1 Score=32.38 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=50.2
Q ss_pred hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCC-CCCCcHHHHHHHHhcCCCCCEEEecCC-CCCCHHHH
Q 026356 45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG-CQKISDKGIEIISSTCPELKVFSIYWN-VRVTDIGI 122 (240)
Q Consensus 45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~-c~~l~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~~ 122 (240)
..+.+|+.+.+.. ++.. +...+...+.+|+.+++.. ...+.+.++ ..|.+|+++.+... ..+.+.+
T Consensus 294 ~~~~~L~~i~l~~--~i~~-----I~~~aF~~c~~L~~i~lp~~v~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~a- 361 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKF-----IGEEAFESCTSLVSIDLPYLVEEIGKRSF----RGCTSLSNINFPLSLRKIGANA- 361 (394)
T ss_dssp TTCTTCCEEEECT--TCCE-----ECTTTTTTCTTCCEECCCTTCCEECTTTT----TTCTTCCEECCCTTCCEECTTT-
T ss_pred ccccccccccccc--ccce-----echhhhcCCCCCCEEEeCCcccEEhHHhc----cCCCCCCEEEECccccEehHHH-
Confidence 4778899998874 2322 2222234568999999965 123333333 25899999999643 2233322
Q ss_pred HHHHHcCCcCCEEeccCC
Q 026356 123 QHLVKNCKHIIDLNLSGC 140 (240)
Q Consensus 123 ~~l~~~~~~L~~L~l~~c 140 (240)
..+|++|+++.+...
T Consensus 362 ---F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 ---FQGCINLKKVELPKR 376 (394)
T ss_dssp ---BTTCTTCCEEEEEGG
T ss_pred ---hhCCCCCCEEEECCC
Confidence 257899999998654
Done!