Query 026360
Match_columns 240
No_of_seqs 338 out of 1927
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:02:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 6.4E-56 1.4E-60 394.2 21.9 203 1-208 109-311 (324)
2 PRK15409 bifunctional glyoxyla 100.0 4.7E-53 1E-57 376.6 22.8 208 1-212 109-319 (323)
3 COG1052 LdhA Lactate dehydroge 100.0 1.8E-52 3.8E-57 371.9 21.8 208 1-212 109-322 (324)
4 PLN03139 formate dehydrogenase 100.0 2.4E-52 5.2E-57 378.4 22.9 212 1-214 164-375 (386)
5 PRK06487 glycerate dehydrogena 100.0 2.5E-52 5.5E-57 371.5 22.4 203 1-212 109-317 (317)
6 PRK07574 formate dehydrogenase 100.0 4.5E-52 9.8E-57 376.7 22.6 210 1-212 157-366 (385)
7 PRK08410 2-hydroxyacid dehydro 100.0 6.4E-52 1.4E-56 368.0 21.8 199 1-207 106-311 (311)
8 PRK11790 D-3-phosphoglycerate 100.0 1.5E-51 3.4E-56 377.4 22.4 225 1-233 118-350 (409)
9 PRK06932 glycerate dehydrogena 100.0 7.2E-51 1.6E-55 361.6 21.0 199 1-207 108-314 (314)
10 PLN02928 oxidoreductase family 100.0 2E-50 4.3E-55 363.1 22.0 206 1-213 128-345 (347)
11 PRK13243 glyoxylate reductase; 100.0 3.7E-50 7.9E-55 359.8 22.3 208 1-213 110-323 (333)
12 PLN02306 hydroxypyruvate reduc 100.0 5.2E-50 1.1E-54 363.9 22.7 227 1-230 129-377 (386)
13 PF02826 2-Hacid_dh_C: D-isome 100.0 1.1E-50 2.3E-55 333.6 12.7 177 1-179 2-178 (178)
14 PRK15469 ghrA bifunctional gly 100.0 4E-49 8.6E-54 349.9 20.7 202 1-212 105-307 (312)
15 TIGR01327 PGDH D-3-phosphoglyc 100.0 6.6E-49 1.4E-53 370.4 22.6 209 1-215 105-314 (525)
16 KOG0068 D-3-phosphoglycerate d 100.0 1.7E-49 3.7E-54 344.5 15.1 209 1-215 113-323 (406)
17 PRK13581 D-3-phosphoglycerate 100.0 4E-48 8.7E-53 365.1 22.1 207 1-214 107-314 (526)
18 PRK06436 glycerate dehydrogena 100.0 2.3E-47 5E-52 337.1 22.1 201 1-216 91-293 (303)
19 KOG0069 Glyoxylate/hydroxypyru 100.0 2.4E-47 5.2E-52 336.6 19.4 207 1-211 127-334 (336)
20 PRK12480 D-lactate dehydrogena 100.0 6.7E-47 1.5E-51 338.1 19.3 205 1-212 112-330 (330)
21 PRK08605 D-lactate dehydrogena 100.0 6.6E-45 1.4E-49 325.8 21.2 205 1-211 112-331 (332)
22 PRK15438 erythronate-4-phospha 100.0 1.4E-41 3E-46 307.1 19.1 168 31-208 111-282 (378)
23 PRK00257 erythronate-4-phospha 100.0 2.1E-41 4.6E-46 306.7 19.2 168 31-207 111-282 (381)
24 KOG0067 Transcription factor C 99.9 2.5E-23 5.5E-28 183.2 8.8 203 2-214 139-347 (435)
25 PTZ00075 Adenosylhomocysteinas 99.8 3.6E-18 7.9E-23 157.7 13.2 119 32-162 250-368 (476)
26 PLN02494 adenosylhomocysteinas 99.7 4.5E-17 9.6E-22 150.3 10.3 121 32-158 250-373 (477)
27 TIGR00936 ahcY adenosylhomocys 99.7 4.1E-16 8.8E-21 142.6 11.4 119 33-156 192-311 (406)
28 PF03446 NAD_binding_2: NAD bi 99.6 4.2E-16 9.1E-21 126.2 7.0 115 37-153 2-117 (163)
29 PRK13403 ketol-acid reductoiso 99.6 1.3E-15 2.9E-20 134.5 9.6 94 32-127 12-105 (335)
30 COG2084 MmsB 3-hydroxyisobutyr 99.6 2.3E-15 4.9E-20 131.5 10.9 123 37-159 1-126 (286)
31 PRK11559 garR tartronate semia 99.5 4.5E-14 9.7E-19 124.5 10.5 123 37-159 3-127 (296)
32 TIGR01505 tartro_sem_red 2-hyd 99.5 3.8E-14 8.3E-19 124.7 9.7 113 38-150 1-115 (291)
33 PRK12490 6-phosphogluconate de 99.5 1.7E-13 3.7E-18 121.2 11.5 114 37-153 1-117 (299)
34 PRK15461 NADH-dependent gamma- 99.5 1.7E-13 3.6E-18 121.2 10.9 114 37-150 2-117 (296)
35 PF00670 AdoHcyase_NAD: S-aden 99.5 2.3E-13 5E-18 109.4 9.0 102 32-138 19-121 (162)
36 PRK09599 6-phosphogluconate de 99.5 5.5E-13 1.2E-17 118.1 11.3 115 37-154 1-118 (301)
37 PLN02350 phosphogluconate dehy 99.4 5.5E-13 1.2E-17 125.0 10.2 123 37-160 7-139 (493)
38 PRK05476 S-adenosyl-L-homocyst 99.4 6E-13 1.3E-17 122.5 10.0 127 8-140 185-312 (425)
39 TIGR02853 spore_dpaA dipicolin 99.4 6.9E-13 1.5E-17 116.8 9.4 96 31-131 146-243 (287)
40 PRK15059 tartronate semialdehy 99.4 2.2E-12 4.8E-17 113.9 11.3 114 37-153 1-116 (292)
41 PRK05479 ketol-acid reductoiso 99.4 2.5E-12 5.5E-17 114.8 9.6 96 32-130 13-109 (330)
42 PLN02256 arogenate dehydrogena 99.3 3.2E-11 7E-16 107.0 15.5 110 33-144 33-143 (304)
43 TIGR00872 gnd_rel 6-phosphoglu 99.3 7.8E-12 1.7E-16 110.6 11.5 117 37-155 1-120 (298)
44 KOG0409 Predicted dehydrogenas 99.3 4.3E-12 9.3E-17 110.2 8.8 116 34-149 33-151 (327)
45 cd00401 AdoHcyase S-adenosyl-L 99.3 9.7E-12 2.1E-16 114.2 11.7 105 31-140 197-302 (413)
46 PLN02858 fructose-bisphosphate 99.3 9.8E-12 2.1E-16 128.7 11.8 118 35-154 3-124 (1378)
47 PLN02712 arogenate dehydrogena 99.3 8.6E-12 1.9E-16 121.1 10.4 114 29-144 362-476 (667)
48 PTZ00142 6-phosphogluconate de 99.3 8.2E-12 1.8E-16 116.7 9.9 122 37-159 2-132 (470)
49 TIGR01692 HIBADH 3-hydroxyisob 99.3 7.9E-12 1.7E-16 110.0 9.0 111 41-153 1-113 (288)
50 KOG0023 Alcohol dehydrogenase, 99.3 6.1E-12 1.3E-16 110.2 6.6 166 35-231 181-357 (360)
51 PLN02858 fructose-bisphosphate 99.3 2.8E-11 6.2E-16 125.3 11.6 119 36-154 324-446 (1378)
52 PRK08306 dipicolinate synthase 99.3 2.8E-11 6E-16 107.1 9.8 94 32-130 148-243 (296)
53 TIGR00873 gnd 6-phosphoglucona 99.2 3.3E-11 7.2E-16 112.7 9.9 120 38-158 1-128 (467)
54 PF07991 IlvN: Acetohydroxy ac 99.2 3.1E-11 6.7E-16 96.8 7.1 94 34-130 2-96 (165)
55 PRK08655 prephenate dehydrogen 99.2 3.7E-10 7.9E-15 105.0 14.4 134 37-178 1-137 (437)
56 PRK07502 cyclohexadienyl dehyd 99.2 2.6E-10 5.7E-15 101.2 12.9 141 35-180 5-155 (307)
57 PLN02712 arogenate dehydrogena 99.2 4.1E-10 8.9E-15 109.5 13.8 109 34-144 50-159 (667)
58 PRK05225 ketol-acid reductoiso 99.2 4.6E-11 9.9E-16 109.7 6.4 106 21-130 21-132 (487)
59 PRK07417 arogenate dehydrogena 99.2 2.6E-10 5.7E-15 99.9 10.8 138 37-180 1-143 (279)
60 TIGR00465 ilvC ketol-acid redu 99.1 1.8E-10 3.9E-15 102.6 9.5 95 34-131 1-96 (314)
61 PF03807 F420_oxidored: NADP o 99.1 8.5E-11 1.8E-15 86.4 5.3 90 38-130 1-96 (96)
62 PLN02688 pyrroline-5-carboxyla 99.1 6.8E-10 1.5E-14 96.3 9.9 104 37-144 1-109 (266)
63 PRK08507 prephenate dehydrogen 99.1 1.3E-09 2.8E-14 95.3 11.7 100 37-144 1-103 (275)
64 COG0287 TyrA Prephenate dehydr 99.1 2.4E-09 5.2E-14 93.9 13.2 136 36-179 3-146 (279)
65 PLN02545 3-hydroxybutyryl-CoA 99.1 2.6E-09 5.6E-14 94.3 13.1 104 37-144 5-133 (295)
66 COG0499 SAM1 S-adenosylhomocys 99.0 8.8E-10 1.9E-14 97.9 9.2 103 33-140 206-309 (420)
67 PRK08293 3-hydroxybutyryl-CoA 99.0 7.3E-09 1.6E-13 91.1 15.1 139 37-187 4-167 (287)
68 PRK07066 3-hydroxybutyryl-CoA 99.0 3.8E-09 8.3E-14 94.4 13.0 114 37-153 8-141 (321)
69 PRK06545 prephenate dehydrogen 99.0 2E-09 4.3E-14 97.7 11.3 135 37-179 1-149 (359)
70 cd01075 NAD_bind_Leu_Phe_Val_D 99.0 3.6E-09 7.7E-14 88.6 11.6 109 32-148 24-134 (200)
71 PRK12491 pyrroline-5-carboxyla 99.0 8.8E-10 1.9E-14 96.4 8.1 104 36-143 2-110 (272)
72 PRK15182 Vi polysaccharide bio 99.0 2.9E-09 6.3E-14 98.7 11.9 136 35-174 5-173 (425)
73 COG1023 Gnd Predicted 6-phosph 99.0 1.8E-09 3.9E-14 91.3 9.2 118 37-157 1-121 (300)
74 PRK09260 3-hydroxybutyryl-CoA 99.0 8.9E-10 1.9E-14 96.9 7.7 115 37-155 2-141 (288)
75 PRK14619 NAD(P)H-dependent gly 99.0 1.5E-09 3.3E-14 96.4 9.2 82 35-131 3-85 (308)
76 KOG1370 S-adenosylhomocysteine 99.0 1.1E-09 2.3E-14 95.5 7.8 94 33-131 211-304 (434)
77 PRK07530 3-hydroxybutyryl-CoA 99.0 1.1E-08 2.4E-13 90.2 14.2 103 37-143 5-132 (292)
78 PRK11064 wecC UDP-N-acetyl-D-m 99.0 2.5E-09 5.5E-14 98.8 10.5 108 37-145 4-136 (415)
79 TIGR03026 NDP-sugDHase nucleot 99.0 5.1E-09 1.1E-13 96.6 12.1 106 37-142 1-134 (411)
80 PRK08818 prephenate dehydrogen 99.0 1.1E-08 2.4E-13 93.1 13.9 122 34-177 2-130 (370)
81 TIGR00518 alaDH alanine dehydr 99.0 6.9E-09 1.5E-13 94.6 12.2 96 33-128 164-267 (370)
82 PRK14618 NAD(P)H-dependent gly 99.0 4.2E-09 9.1E-14 94.3 10.2 103 36-144 4-123 (328)
83 cd01065 NAD_bind_Shikimate_DH 98.9 9.6E-09 2.1E-13 81.6 10.7 111 33-148 16-134 (155)
84 COG1064 AdhP Zn-dependent alco 98.9 2E-09 4.3E-14 96.2 7.3 161 35-228 166-337 (339)
85 PRK07679 pyrroline-5-carboxyla 98.9 5.2E-09 1.1E-13 91.7 9.4 106 35-144 2-113 (279)
86 PRK14806 bifunctional cyclohex 98.9 1.3E-08 2.9E-13 100.3 13.3 138 36-180 3-153 (735)
87 PRK11199 tyrA bifunctional cho 98.9 1.8E-08 3.8E-13 92.0 13.1 91 35-141 97-188 (374)
88 PRK06129 3-hydroxyacyl-CoA deh 98.9 4.3E-08 9.3E-13 87.1 14.1 106 37-144 3-132 (308)
89 TIGR01724 hmd_rel H2-forming N 98.9 1.1E-08 2.5E-13 90.3 9.7 93 48-144 32-129 (341)
90 PRK07819 3-hydroxybutyryl-CoA 98.9 2E-08 4.4E-13 88.4 11.4 116 37-156 6-146 (286)
91 PRK14194 bifunctional 5,10-met 98.9 8.9E-09 1.9E-13 90.8 8.6 80 31-131 154-234 (301)
92 PRK05808 3-hydroxybutyryl-CoA 98.9 7.9E-08 1.7E-12 84.3 14.6 105 37-144 4-132 (282)
93 PRK00094 gpsA NAD(P)H-dependen 98.9 8.3E-09 1.8E-13 91.7 8.5 94 37-132 2-109 (325)
94 PRK07531 bifunctional 3-hydrox 98.9 1.6E-08 3.5E-13 95.5 10.8 106 37-144 5-130 (495)
95 PRK15057 UDP-glucose 6-dehydro 98.9 1.9E-08 4.1E-13 92.3 10.8 129 37-174 1-160 (388)
96 PRK06035 3-hydroxyacyl-CoA deh 98.8 7.5E-08 1.6E-12 84.8 13.8 105 37-144 4-135 (291)
97 PRK07680 late competence prote 98.8 1.9E-08 4E-13 87.9 9.4 103 37-143 1-109 (273)
98 PRK13302 putative L-aspartate 98.8 1.5E-08 3.2E-13 88.7 8.4 109 35-148 5-118 (271)
99 PRK06130 3-hydroxybutyryl-CoA 98.8 2.6E-08 5.6E-13 88.5 9.7 105 37-143 5-128 (311)
100 PRK09287 6-phosphogluconate de 98.8 1.6E-08 3.6E-13 94.4 8.7 112 47-159 1-120 (459)
101 PRK08268 3-hydroxy-acyl-CoA de 98.8 2.8E-08 6E-13 94.1 10.3 115 37-156 8-147 (507)
102 PF10727 Rossmann-like: Rossma 98.8 5.3E-09 1.1E-13 81.3 4.1 92 35-128 9-104 (127)
103 PF01210 NAD_Gly3P_dh_N: NAD-d 98.8 1.5E-08 3.3E-13 81.4 6.8 92 38-131 1-106 (157)
104 PRK06476 pyrroline-5-carboxyla 98.8 2.8E-08 6E-13 86.1 8.7 103 37-145 1-108 (258)
105 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.8 5.3E-08 1.2E-12 92.1 11.0 116 36-156 5-145 (503)
106 PF01488 Shikimate_DH: Shikima 98.8 9.2E-09 2E-13 80.7 4.7 94 33-129 9-110 (135)
107 COG0059 IlvC Ketol-acid reduct 98.7 3.6E-08 7.7E-13 86.1 8.2 90 33-124 15-105 (338)
108 cd01080 NAD_bind_m-THF_DH_Cycl 98.7 6.4E-08 1.4E-12 78.8 8.6 82 32-134 40-122 (168)
109 PRK11880 pyrroline-5-carboxyla 98.7 5.8E-08 1.2E-12 84.3 8.1 101 37-143 3-107 (267)
110 PRK06928 pyrroline-5-carboxyla 98.7 1.3E-07 2.9E-12 82.9 10.1 103 37-143 2-111 (277)
111 PRK14188 bifunctional 5,10-met 98.7 8.6E-08 1.9E-12 84.6 8.7 79 31-131 153-233 (296)
112 COG0345 ProC Pyrroline-5-carbo 98.7 1.1E-07 2.4E-12 82.6 9.3 99 37-143 2-108 (266)
113 PRK14189 bifunctional 5,10-met 98.6 1.2E-07 2.6E-12 83.2 8.4 81 31-132 153-234 (285)
114 PRK07634 pyrroline-5-carboxyla 98.6 2.4E-07 5.2E-12 79.3 9.5 106 35-145 3-114 (245)
115 PRK12557 H(2)-dependent methyl 98.6 2.6E-07 5.7E-12 83.3 9.8 95 48-143 32-132 (342)
116 PRK14179 bifunctional 5,10-met 98.6 1.9E-07 4.2E-12 81.8 8.5 80 31-131 153-233 (284)
117 KOG2380 Prephenate dehydrogena 98.6 2.1E-07 4.5E-12 82.5 7.7 140 35-179 51-192 (480)
118 PRK13304 L-aspartate dehydroge 98.6 3E-07 6.5E-12 80.2 8.7 107 37-148 2-115 (265)
119 TIGR00561 pntA NAD(P) transhyd 98.5 3.1E-07 6.7E-12 86.6 8.9 96 33-129 161-285 (511)
120 PRK14175 bifunctional 5,10-met 98.5 4.9E-07 1.1E-11 79.4 8.7 80 31-131 153-233 (286)
121 PRK08229 2-dehydropantoate 2-r 98.5 6E-07 1.3E-11 80.6 9.4 107 37-148 3-126 (341)
122 PRK06522 2-dehydropantoate 2-r 98.5 1E-06 2.2E-11 77.5 10.7 108 37-148 1-119 (304)
123 TIGR01915 npdG NADPH-dependent 98.5 4.7E-07 1E-11 76.6 7.7 94 37-133 1-106 (219)
124 PF01262 AlaDh_PNT_C: Alanine 98.5 2.2E-07 4.7E-12 75.6 5.1 96 33-128 17-139 (168)
125 cd05191 NAD_bind_amino_acid_DH 98.5 1.3E-06 2.8E-11 63.1 8.5 66 33-128 20-86 (86)
126 cd05311 NAD_bind_2_malic_enz N 98.4 2.8E-06 6.2E-11 72.4 11.5 132 32-180 21-169 (226)
127 PRK12921 2-dehydropantoate 2-r 98.4 1.4E-06 3E-11 76.8 9.9 108 37-148 1-121 (305)
128 cd05213 NAD_bind_Glutamyl_tRNA 98.4 8.5E-07 1.9E-11 79.0 8.4 93 34-128 176-273 (311)
129 TIGR01035 hemA glutamyl-tRNA r 98.4 5.3E-07 1.2E-11 83.5 7.2 94 33-129 177-278 (417)
130 COG0362 Gnd 6-phosphogluconate 98.4 4.7E-06 1E-10 75.4 12.8 159 36-208 3-169 (473)
131 PF03721 UDPG_MGDP_dh_N: UDP-g 98.4 3.6E-07 7.7E-12 75.6 5.4 108 37-144 1-137 (185)
132 PLN02353 probable UDP-glucose 98.4 7.5E-06 1.6E-10 77.0 14.7 138 37-175 2-177 (473)
133 PF02737 3HCDH_N: 3-hydroxyacy 98.4 5.8E-07 1.3E-11 74.0 6.5 114 38-155 1-138 (180)
134 PTZ00431 pyrroline carboxylate 98.4 1.2E-06 2.7E-11 76.0 8.4 98 35-143 2-103 (260)
135 COG2085 Predicted dinucleotide 98.4 2.1E-06 4.5E-11 71.9 8.3 91 37-130 2-95 (211)
136 PRK09424 pntA NAD(P) transhydr 98.3 1.3E-06 2.9E-11 82.4 8.0 96 33-128 162-285 (509)
137 PRK00045 hemA glutamyl-tRNA re 98.3 1E-06 2.2E-11 81.7 7.1 93 33-128 179-280 (423)
138 PLN00203 glutamyl-tRNA reducta 98.3 9.8E-07 2.1E-11 83.7 6.9 93 33-128 263-369 (519)
139 PRK06141 ornithine cyclodeamin 98.3 2.4E-06 5.3E-11 76.2 8.8 89 34-128 123-219 (314)
140 COG0240 GpsA Glycerol-3-phosph 98.3 1.8E-06 4E-11 76.8 7.8 97 37-135 2-112 (329)
141 PRK10792 bifunctional 5,10-met 98.3 4.4E-06 9.6E-11 73.3 10.0 79 31-130 154-233 (285)
142 PF02882 THF_DHG_CYH_C: Tetrah 98.3 2.2E-06 4.8E-11 69.2 7.5 81 31-132 31-112 (160)
143 PF02153 PDH: Prephenate dehyd 98.3 5.6E-06 1.2E-10 71.9 10.3 125 51-179 1-133 (258)
144 PRK14191 bifunctional 5,10-met 98.3 2.9E-06 6.3E-11 74.4 8.0 80 31-131 152-232 (285)
145 PTZ00345 glycerol-3-phosphate 98.3 2.8E-06 6.1E-11 77.3 8.0 98 35-134 10-135 (365)
146 PRK14192 bifunctional 5,10-met 98.3 4.8E-06 1E-10 73.3 9.1 79 31-130 154-233 (283)
147 TIGR03376 glycerol3P_DH glycer 98.3 3E-06 6.5E-11 76.5 7.9 94 38-133 1-121 (342)
148 PRK05472 redox-sensing transcr 98.3 7E-07 1.5E-11 75.3 3.4 110 35-144 83-201 (213)
149 TIGR02371 ala_DH_arch alanine 98.2 3.7E-06 8.1E-11 75.4 8.2 90 35-130 127-224 (325)
150 cd05212 NAD_bind_m-THF_DH_Cycl 98.2 1.2E-05 2.7E-10 63.5 10.1 80 31-131 23-103 (140)
151 PRK14178 bifunctional 5,10-met 98.2 4E-06 8.7E-11 73.3 7.6 80 31-131 147-227 (279)
152 PRK14176 bifunctional 5,10-met 98.2 5.8E-06 1.3E-10 72.6 8.5 79 31-130 159-238 (287)
153 PRK00258 aroE shikimate 5-dehy 98.2 5.4E-06 1.2E-10 72.7 8.4 97 32-128 119-221 (278)
154 COG0677 WecC UDP-N-acetyl-D-ma 98.2 2.1E-05 4.5E-10 71.4 11.9 156 37-206 10-202 (436)
155 TIGR00507 aroE shikimate 5-deh 98.2 1E-05 2.3E-10 70.5 9.9 110 33-147 114-231 (270)
156 cd01079 NAD_bind_m-THF_DH NAD 98.2 1.3E-05 2.8E-10 66.4 9.5 91 31-129 57-157 (197)
157 PRK12439 NAD(P)H-dependent gly 98.2 5.1E-06 1.1E-10 75.0 7.7 92 37-131 8-114 (341)
158 PRK14620 NAD(P)H-dependent gly 98.2 6.7E-06 1.5E-10 73.5 8.4 93 37-131 1-109 (326)
159 COG0686 Ald Alanine dehydrogen 98.2 2.8E-06 6.1E-11 74.7 5.7 95 33-128 165-268 (371)
160 PRK13940 glutamyl-tRNA reducta 98.1 1.4E-05 3.1E-10 73.9 9.5 91 33-128 178-273 (414)
161 PRK14183 bifunctional 5,10-met 98.1 1.2E-05 2.5E-10 70.5 8.4 80 31-131 152-232 (281)
162 PRK06249 2-dehydropantoate 2-r 98.1 6.6E-05 1.4E-09 66.8 13.1 110 36-151 5-128 (313)
163 cd01078 NAD_bind_H4MPT_DH NADP 98.1 9.4E-06 2E-10 67.2 7.1 96 32-131 24-132 (194)
164 PRK14190 bifunctional 5,10-met 98.1 2.1E-05 4.5E-10 69.1 9.4 80 31-131 153-233 (284)
165 PRK14170 bifunctional 5,10-met 98.1 3.3E-05 7.2E-10 67.8 9.9 80 31-131 152-232 (284)
166 cd01076 NAD_bind_1_Glu_DH NAD( 98.0 4.4E-05 9.5E-10 65.2 10.2 107 33-148 28-154 (227)
167 TIGR01546 GAPDH-II_archae glyc 98.0 2E-05 4.4E-10 70.7 8.4 88 39-129 1-109 (333)
168 PRK07340 ornithine cyclodeamin 98.0 1.5E-05 3.3E-10 70.8 7.4 91 34-131 123-220 (304)
169 PF13241 NAD_binding_7: Putati 98.0 1.3E-05 2.8E-10 59.9 5.8 87 33-128 4-91 (103)
170 PRK14172 bifunctional 5,10-met 98.0 4.5E-05 9.7E-10 66.8 9.9 80 31-131 153-233 (278)
171 PRK14177 bifunctional 5,10-met 98.0 2.9E-05 6.3E-10 68.1 8.7 80 31-131 154-234 (284)
172 PRK11730 fadB multifunctional 98.0 5.3E-05 1.1E-09 74.8 11.5 115 37-155 314-452 (715)
173 PRK14173 bifunctional 5,10-met 98.0 3E-05 6.5E-10 68.2 8.7 81 31-132 150-231 (287)
174 PRK14186 bifunctional 5,10-met 98.0 3.1E-05 6.8E-10 68.4 8.7 80 31-131 153-233 (297)
175 cd05211 NAD_bind_Glu_Leu_Phe_V 98.0 7E-05 1.5E-09 63.5 10.6 108 33-148 20-145 (217)
176 PRK14169 bifunctional 5,10-met 98.0 3.4E-05 7.3E-10 67.7 8.6 80 31-131 151-231 (282)
177 PRK08618 ornithine cyclodeamin 98.0 3.2E-05 6.9E-10 69.4 8.5 89 35-130 126-223 (325)
178 PRK14166 bifunctional 5,10-met 98.0 3.8E-05 8.2E-10 67.4 8.6 79 31-130 152-231 (282)
179 PRK14180 bifunctional 5,10-met 98.0 4E-05 8.6E-10 67.2 8.7 79 31-130 153-232 (282)
180 COG0373 HemA Glutamyl-tRNA red 98.0 1.9E-05 4.1E-10 72.6 6.9 93 33-128 175-274 (414)
181 TIGR02992 ectoine_eutC ectoine 98.0 4.4E-05 9.4E-10 68.6 9.2 88 35-128 128-224 (326)
182 PRK13303 L-aspartate dehydroge 98.0 5.9E-05 1.3E-09 65.8 9.7 107 37-148 2-115 (265)
183 COG1250 FadB 3-hydroxyacyl-CoA 97.9 8.2E-05 1.8E-09 66.1 10.3 116 36-155 3-142 (307)
184 PRK14187 bifunctional 5,10-met 97.9 4.8E-05 1E-09 67.1 8.7 80 31-131 155-235 (294)
185 PRK13301 putative L-aspartate 97.9 5.7E-05 1.2E-09 65.6 9.0 103 37-145 3-113 (267)
186 PLN02516 methylenetetrahydrofo 97.9 4.9E-05 1.1E-09 67.2 8.7 80 31-131 162-242 (299)
187 PRK12549 shikimate 5-dehydroge 97.9 5.5E-05 1.2E-09 66.7 9.1 71 33-103 124-203 (284)
188 TIGR02440 FadJ fatty oxidation 97.9 0.0001 2.2E-09 72.7 11.7 115 37-155 305-444 (699)
189 PRK09310 aroDE bifunctional 3- 97.9 5.7E-05 1.2E-09 71.2 9.6 72 31-103 327-401 (477)
190 PRK14171 bifunctional 5,10-met 97.9 4.7E-05 1E-09 66.9 8.4 79 31-130 154-233 (288)
191 PLN02616 tetrahydrofolate dehy 97.9 4.7E-05 1E-09 68.7 8.5 80 31-131 226-306 (364)
192 PRK06046 alanine dehydrogenase 97.9 3.8E-05 8.2E-10 68.9 7.9 88 35-129 128-224 (326)
193 KOG2653 6-phosphogluconate deh 97.9 0.00015 3.3E-09 64.9 11.5 158 37-208 7-173 (487)
194 PRK14182 bifunctional 5,10-met 97.9 5.7E-05 1.2E-09 66.2 8.7 80 31-131 152-232 (282)
195 TIGR02437 FadB fatty oxidation 97.9 0.00012 2.6E-09 72.3 11.8 115 37-155 314-452 (714)
196 PRK14193 bifunctional 5,10-met 97.9 6E-05 1.3E-09 66.2 8.7 80 31-131 153-235 (284)
197 PTZ00117 malate dehydrogenase; 97.9 7.4E-05 1.6E-09 66.9 9.5 117 34-151 3-147 (319)
198 PRK14031 glutamate dehydrogena 97.9 0.00011 2.4E-09 68.4 10.8 111 31-148 223-361 (444)
199 COG1712 Predicted dinucleotide 97.9 4.3E-05 9.2E-10 64.5 7.3 97 37-138 1-101 (255)
200 COG1748 LYS9 Saccharopine dehy 97.9 4.2E-05 9E-10 69.9 7.9 105 37-148 2-118 (389)
201 PLN02897 tetrahydrofolate dehy 97.9 5.4E-05 1.2E-09 67.9 8.3 80 31-131 209-289 (345)
202 PRK14181 bifunctional 5,10-met 97.9 6.7E-05 1.5E-09 66.0 8.7 80 31-131 148-232 (287)
203 PRK11154 fadJ multifunctional 97.9 0.00013 2.9E-09 71.9 11.6 115 37-155 310-449 (708)
204 TIGR02441 fa_ox_alpha_mit fatt 97.9 0.0001 2.2E-09 73.1 10.8 115 37-155 336-474 (737)
205 PRK14982 acyl-ACP reductase; P 97.9 6.3E-05 1.4E-09 67.8 8.3 98 31-134 150-252 (340)
206 cd05313 NAD_bind_2_Glu_DH NAD( 97.9 0.0003 6.6E-09 60.9 12.2 109 32-148 34-172 (254)
207 PRK06444 prephenate dehydrogen 97.9 6.2E-05 1.4E-09 62.8 7.6 62 37-132 1-63 (197)
208 PRK08291 ectoine utilization p 97.8 6.5E-05 1.4E-09 67.5 8.0 88 35-128 131-227 (330)
209 PF02558 ApbA: Ketopantoate re 97.8 3.3E-05 7.1E-10 61.0 5.4 109 39-151 1-123 (151)
210 PRK14184 bifunctional 5,10-met 97.8 8.2E-05 1.8E-09 65.4 8.2 78 31-129 152-234 (286)
211 TIGR02354 thiF_fam2 thiamine b 97.8 7.1E-05 1.5E-09 62.6 7.4 96 32-128 17-145 (200)
212 TIGR01763 MalateDH_bact malate 97.8 9.1E-05 2E-09 65.9 8.3 116 37-153 2-147 (305)
213 PRK00676 hemA glutamyl-tRNA re 97.8 9.7E-05 2.1E-09 66.5 8.5 90 33-128 171-261 (338)
214 PRK14168 bifunctional 5,10-met 97.8 0.00011 2.3E-09 65.0 8.4 80 31-131 156-240 (297)
215 PF01408 GFO_IDH_MocA: Oxidore 97.8 3.9E-05 8.4E-10 58.1 5.0 65 38-102 2-72 (120)
216 PRK06823 ornithine cyclodeamin 97.8 9.5E-05 2.1E-09 66.1 8.2 89 35-129 127-223 (315)
217 PRK14174 bifunctional 5,10-met 97.8 9.9E-05 2.2E-09 65.2 8.2 79 31-130 154-237 (295)
218 COG0190 FolD 5,10-methylene-te 97.8 8.1E-05 1.8E-09 64.9 7.4 116 31-188 151-267 (283)
219 PRK14185 bifunctional 5,10-met 97.8 0.00013 2.7E-09 64.4 8.7 80 31-131 152-236 (293)
220 PRK14030 glutamate dehydrogena 97.8 0.0003 6.4E-09 65.5 11.4 110 31-148 223-362 (445)
221 PF00208 ELFV_dehydrog: Glutam 97.8 0.00015 3.2E-09 62.6 8.9 109 33-148 29-165 (244)
222 TIGR01921 DAP-DH diaminopimela 97.8 0.00031 6.7E-09 62.9 10.9 107 37-149 4-116 (324)
223 PRK06199 ornithine cyclodeamin 97.8 0.00011 2.4E-09 67.3 8.3 94 35-131 154-262 (379)
224 PRK06718 precorrin-2 dehydroge 97.7 9.1E-05 2E-09 62.1 7.0 91 32-128 6-100 (202)
225 PRK14167 bifunctional 5,10-met 97.7 0.00017 3.7E-09 63.8 8.8 80 31-131 152-236 (297)
226 smart00859 Semialdhyde_dh Semi 97.7 0.00013 2.7E-09 55.9 7.1 89 38-128 1-99 (122)
227 PRK00048 dihydrodipicolinate r 97.7 0.00018 3.8E-09 62.5 8.7 65 37-101 2-69 (257)
228 PLN02477 glutamate dehydrogena 97.7 0.00044 9.5E-09 63.9 11.4 110 31-148 201-329 (410)
229 cd00650 LDH_MDH_like NAD-depen 97.7 0.0001 2.3E-09 64.0 6.9 117 39-155 1-149 (263)
230 PF02423 OCD_Mu_crystall: Orni 97.7 8.2E-05 1.8E-09 66.5 6.4 91 36-130 128-226 (313)
231 PF00185 OTCace: Aspartate/orn 97.7 0.00049 1.1E-08 55.4 9.9 94 35-128 1-120 (158)
232 PF13380 CoA_binding_2: CoA bi 97.7 0.00052 1.1E-08 52.4 9.4 100 37-148 1-104 (116)
233 PRK09414 glutamate dehydrogena 97.7 0.00039 8.5E-09 64.8 10.4 110 31-148 227-362 (445)
234 COG1004 Ugd Predicted UDP-gluc 97.6 0.00039 8.5E-09 63.3 9.8 137 37-174 1-169 (414)
235 PRK07589 ornithine cyclodeamin 97.6 0.00018 4E-09 65.0 7.8 90 36-129 129-226 (346)
236 TIGR01470 cysG_Nterm siroheme 97.6 0.00014 3.1E-09 61.0 6.6 92 32-128 5-100 (205)
237 PRK06407 ornithine cyclodeamin 97.6 0.00023 5.1E-09 63.2 8.2 88 35-128 116-212 (301)
238 COG2423 Predicted ornithine cy 97.6 0.00023 4.9E-09 64.0 8.1 88 36-129 130-226 (330)
239 PF03720 UDPG_MGDP_dh_C: UDP-g 97.6 0.0002 4.4E-09 53.7 6.6 80 46-127 17-100 (106)
240 PTZ00079 NADP-specific glutama 97.6 0.00099 2.1E-08 62.1 11.7 111 31-148 232-371 (454)
241 COG0334 GdhA Glutamate dehydro 97.6 0.00063 1.4E-08 62.3 10.0 108 32-147 203-330 (411)
242 PRK01710 murD UDP-N-acetylmura 97.5 0.00075 1.6E-08 63.2 10.7 113 34-147 12-144 (458)
243 COG0569 TrkA K+ transport syst 97.5 0.0002 4.3E-09 61.0 5.5 69 37-105 1-79 (225)
244 PRK00683 murD UDP-N-acetylmura 97.5 0.0004 8.7E-09 64.3 7.8 110 36-145 3-127 (418)
245 PF01113 DapB_N: Dihydrodipico 97.4 0.00045 9.7E-09 53.3 6.7 103 37-144 1-114 (124)
246 cd05291 HicDH_like L-2-hydroxy 97.4 0.00073 1.6E-08 60.1 8.9 91 37-128 1-117 (306)
247 PRK12548 shikimate 5-dehydroge 97.4 0.00073 1.6E-08 59.6 8.9 70 33-102 123-209 (289)
248 TIGR01809 Shik-DH-AROM shikima 97.4 0.00036 7.7E-09 61.4 6.7 71 33-103 122-201 (282)
249 PRK05708 2-dehydropantoate 2-r 97.4 0.00081 1.8E-08 59.7 8.7 112 37-151 3-126 (305)
250 PRK06719 precorrin-2 dehydroge 97.4 0.00063 1.4E-08 54.8 7.2 70 32-103 9-81 (157)
251 KOG2304 3-hydroxyacyl-CoA dehy 97.4 6.4E-05 1.4E-09 63.6 1.4 121 34-158 9-159 (298)
252 TIGR00670 asp_carb_tr aspartat 97.4 0.0021 4.6E-08 57.1 10.8 96 33-128 147-263 (301)
253 PTZ00082 L-lactate dehydrogena 97.4 0.00075 1.6E-08 60.5 7.9 117 34-151 4-153 (321)
254 PRK00856 pyrB aspartate carbam 97.3 0.0013 2.8E-08 58.6 9.3 93 33-127 153-261 (305)
255 cd08230 glucose_DH Glucose deh 97.3 0.00071 1.5E-08 60.8 7.7 89 35-128 172-269 (355)
256 PF01118 Semialdhyde_dh: Semia 97.3 0.00042 9.1E-09 53.1 5.2 87 38-129 1-98 (121)
257 COG0026 PurK Phosphoribosylami 97.3 0.0005 1.1E-08 62.1 6.3 63 36-98 1-68 (375)
258 cd05297 GH4_alpha_glucosidase_ 97.3 0.00049 1.1E-08 64.0 6.5 65 37-101 1-83 (423)
259 PRK01390 murD UDP-N-acetylmura 97.3 0.0015 3.3E-08 61.1 9.7 114 33-146 6-140 (460)
260 PRK09496 trkA potassium transp 97.3 0.00049 1.1E-08 63.9 6.4 69 37-105 1-78 (453)
261 PF02254 TrkA_N: TrkA-N domain 97.3 0.00085 1.8E-08 50.4 6.5 85 39-125 1-93 (116)
262 PRK03369 murD UDP-N-acetylmura 97.3 0.00069 1.5E-08 64.1 7.2 112 34-145 10-142 (488)
263 PRK08306 dipicolinate synthase 97.3 0.0025 5.4E-08 56.5 10.3 107 35-149 1-117 (296)
264 PRK09880 L-idonate 5-dehydroge 97.3 0.0011 2.3E-08 59.4 8.1 91 34-129 168-267 (343)
265 PRK06223 malate dehydrogenase; 97.3 0.002 4.2E-08 57.2 9.5 63 37-100 3-78 (307)
266 PRK00779 ornithine carbamoyltr 97.2 0.0024 5.2E-08 56.8 9.8 95 33-127 149-264 (304)
267 COG0540 PyrB Aspartate carbamo 97.2 0.0012 2.5E-08 58.4 7.6 67 33-99 155-231 (316)
268 PRK08269 3-hydroxybutyryl-CoA 97.2 0.0067 1.5E-07 54.2 12.7 95 47-143 1-128 (314)
269 PRK04207 glyceraldehyde-3-phos 97.2 0.0012 2.6E-08 59.7 7.8 66 37-102 2-88 (341)
270 PLN02342 ornithine carbamoyltr 97.2 0.0032 7E-08 57.0 10.4 96 33-128 191-307 (348)
271 TIGR01850 argC N-acetyl-gamma- 97.2 0.0014 3.1E-08 59.3 8.2 93 37-135 1-106 (346)
272 PLN02178 cinnamyl-alcohol dehy 97.2 0.00082 1.8E-08 61.3 6.5 89 35-128 178-273 (375)
273 PLN02527 aspartate carbamoyltr 97.2 0.0041 8.8E-08 55.4 10.7 96 33-128 148-266 (306)
274 COG0169 AroE Shikimate 5-dehyd 97.2 0.0025 5.4E-08 56.2 9.1 93 32-127 122-225 (283)
275 PRK12749 quinate/shikimate deh 97.2 0.0038 8.2E-08 55.2 10.3 70 32-102 120-206 (288)
276 COG0771 MurD UDP-N-acetylmuram 97.2 0.0024 5.1E-08 59.6 9.3 125 34-158 5-156 (448)
277 PRK02255 putrescine carbamoylt 97.2 0.0033 7.2E-08 56.8 10.0 95 33-127 151-271 (338)
278 cd01339 LDH-like_MDH L-lactate 97.2 0.0013 2.7E-08 58.3 7.2 112 39-151 1-140 (300)
279 PRK03659 glutathione-regulated 97.2 0.0012 2.5E-08 64.1 7.5 92 36-129 400-499 (601)
280 TIGR00658 orni_carb_tr ornithi 97.1 0.0033 7.1E-08 56.0 9.6 96 33-128 145-264 (304)
281 PLN02353 probable UDP-glucose 97.1 0.0038 8.3E-08 58.9 10.5 104 33-139 321-456 (473)
282 PRK10669 putative cation:proto 97.1 0.0012 2.7E-08 63.3 7.3 88 37-126 418-513 (558)
283 COG4007 Predicted dehydrogenas 97.1 0.0017 3.7E-08 56.0 7.3 91 48-142 33-128 (340)
284 PRK13814 pyrB aspartate carbam 97.1 0.0026 5.7E-08 56.8 8.8 67 33-99 154-224 (310)
285 PRK00066 ldh L-lactate dehydro 97.1 0.0018 3.9E-08 57.9 7.8 94 35-129 5-123 (315)
286 cd00757 ThiF_MoeB_HesA_family 97.1 0.037 8.1E-07 47.0 15.5 93 32-128 17-143 (228)
287 PLN02586 probable cinnamyl alc 97.1 0.0019 4.1E-08 58.5 7.9 89 35-128 183-278 (360)
288 TIGR02356 adenyl_thiF thiazole 97.1 0.0014 2.9E-08 54.9 6.5 93 32-128 17-143 (202)
289 PRK12475 thiamine/molybdopteri 97.1 0.0012 2.6E-08 59.6 6.5 82 32-114 20-137 (338)
290 TIGR02964 xanthine_xdhC xanthi 97.1 0.0038 8.3E-08 53.9 9.3 89 37-148 101-189 (246)
291 TIGR03366 HpnZ_proposed putati 97.1 0.0016 3.4E-08 56.7 6.9 89 35-128 120-218 (280)
292 PRK04148 hypothetical protein; 97.1 0.0011 2.3E-08 52.0 5.1 68 35-103 16-88 (134)
293 PRK02102 ornithine carbamoyltr 97.1 0.0048 1E-07 55.6 9.9 96 33-128 152-273 (331)
294 PRK02472 murD UDP-N-acetylmura 97.1 0.0086 1.9E-07 55.7 12.0 114 33-146 2-134 (447)
295 PRK08300 acetaldehyde dehydrog 97.1 0.0033 7.2E-08 55.8 8.7 88 36-128 4-101 (302)
296 PRK00141 murD UDP-N-acetylmura 97.1 0.0015 3.3E-08 61.5 7.0 114 33-146 12-147 (473)
297 PRK04284 ornithine carbamoyltr 97.0 0.0053 1.1E-07 55.3 10.0 96 33-128 152-274 (332)
298 cd05292 LDH_2 A subgroup of L- 97.0 0.0018 3.9E-08 57.7 6.9 65 37-102 1-77 (308)
299 PRK01713 ornithine carbamoyltr 97.0 0.0047 1E-07 55.7 9.6 96 33-128 153-275 (334)
300 COG1648 CysG Siroheme synthase 97.0 0.0013 2.9E-08 55.4 5.6 90 32-128 8-103 (210)
301 cd05293 LDH_1 A subgroup of L- 97.0 0.0039 8.6E-08 55.7 9.0 114 37-151 4-145 (312)
302 PRK14106 murD UDP-N-acetylmura 97.0 0.0067 1.4E-07 56.4 10.7 112 33-144 2-132 (450)
303 KOG2711 Glycerol-3-phosphate d 97.0 0.0029 6.2E-08 56.6 7.6 96 34-131 19-142 (372)
304 TIGR02822 adh_fam_2 zinc-bindi 97.0 0.0028 6E-08 56.6 7.7 89 35-128 165-254 (329)
305 PF00389 2-Hacid_dh: D-isomer 97.0 0.0012 2.5E-08 51.3 4.6 127 46-212 6-133 (133)
306 PRK14027 quinate/shikimate deh 97.0 0.0034 7.4E-08 55.3 8.0 71 33-103 124-205 (283)
307 COG1893 ApbA Ketopantoate redu 97.0 0.0029 6.4E-08 56.4 7.6 141 37-182 1-154 (307)
308 PRK03515 ornithine carbamoyltr 96.9 0.0041 8.9E-08 56.1 8.3 96 33-128 153-275 (336)
309 PLN02968 Probable N-acetyl-gam 96.9 0.002 4.3E-08 59.1 6.4 97 35-137 37-143 (381)
310 TIGR03215 ac_ald_DH_ac acetald 96.9 0.0048 1E-07 54.4 8.3 88 37-129 2-96 (285)
311 PRK03562 glutathione-regulated 96.9 0.0027 5.9E-08 61.9 7.4 90 36-127 400-497 (621)
312 PRK05086 malate dehydrogenase; 96.9 0.0054 1.2E-07 54.8 8.7 94 37-130 1-120 (312)
313 PLN02819 lysine-ketoglutarate 96.9 0.0029 6.2E-08 64.6 7.6 68 35-102 568-658 (1042)
314 COG5322 Predicted dehydrogenas 96.9 0.0027 5.8E-08 55.2 6.1 97 30-131 161-264 (351)
315 cd05188 MDR Medium chain reduc 96.8 0.0084 1.8E-07 50.7 9.1 92 34-130 133-234 (271)
316 PRK02006 murD UDP-N-acetylmura 96.8 0.0036 7.9E-08 59.2 7.5 116 33-148 4-149 (498)
317 PRK05690 molybdopterin biosynt 96.8 0.0013 2.7E-08 56.8 4.0 93 32-128 28-154 (245)
318 PLN02520 bifunctional 3-dehydr 96.8 0.0058 1.3E-07 58.5 8.8 70 33-102 376-449 (529)
319 PRK07688 thiamine/molybdopteri 96.8 0.069 1.5E-06 48.3 15.2 37 32-68 20-57 (339)
320 PRK11891 aspartate carbamoyltr 96.8 0.0092 2E-07 55.5 9.6 95 33-127 238-354 (429)
321 PRK12562 ornithine carbamoyltr 96.8 0.012 2.6E-07 53.1 10.0 96 33-128 153-275 (334)
322 TIGR00036 dapB dihydrodipicoli 96.8 0.008 1.7E-07 52.5 8.7 106 37-147 2-119 (266)
323 PF00056 Ldh_1_N: lactate/mala 96.7 0.0016 3.6E-08 51.3 3.8 65 37-101 1-78 (141)
324 cd05312 NAD_bind_1_malic_enz N 96.7 0.021 4.6E-07 50.1 11.0 170 31-206 20-224 (279)
325 PRK00421 murC UDP-N-acetylmura 96.7 0.0048 1E-07 57.8 7.4 113 34-146 5-133 (461)
326 PRK11579 putative oxidoreducta 96.7 0.0048 1E-07 55.6 7.2 65 37-103 5-75 (346)
327 TIGR03026 NDP-sugDHase nucleot 96.7 0.011 2.3E-07 54.8 9.6 89 33-127 310-409 (411)
328 cd08239 THR_DH_like L-threonin 96.7 0.0059 1.3E-07 54.3 7.6 89 35-128 163-262 (339)
329 PRK06270 homoserine dehydrogen 96.7 0.013 2.8E-07 53.0 9.7 112 37-148 3-146 (341)
330 PRK09496 trkA potassium transp 96.7 0.0083 1.8E-07 55.7 8.7 92 34-127 229-330 (453)
331 PRK01438 murD UDP-N-acetylmura 96.7 0.0055 1.2E-07 57.6 7.5 115 31-145 11-147 (480)
332 cd00762 NAD_bind_malic_enz NAD 96.7 0.019 4.1E-07 49.7 10.1 169 31-205 20-224 (254)
333 PRK00436 argC N-acetyl-gamma-g 96.7 0.0075 1.6E-07 54.5 8.0 94 37-135 3-106 (343)
334 PF13460 NAD_binding_10: NADH( 96.7 0.003 6.4E-08 51.0 4.8 63 39-103 1-71 (183)
335 PRK06019 phosphoribosylaminoim 96.6 0.0039 8.5E-08 56.8 6.1 62 36-98 2-69 (372)
336 COG1004 Ugd Predicted UDP-gluc 96.6 0.0074 1.6E-07 55.2 7.6 88 34-126 308-406 (414)
337 PTZ00325 malate dehydrogenase; 96.6 0.012 2.6E-07 52.8 9.0 69 33-101 5-85 (321)
338 TIGR01761 thiaz-red thiazoliny 96.6 0.014 2.9E-07 52.9 9.1 111 36-150 3-119 (343)
339 TIGR03316 ygeW probable carbam 96.6 0.016 3.6E-07 52.7 9.6 68 33-100 167-253 (357)
340 PF13478 XdhC_C: XdhC Rossmann 96.6 0.0044 9.5E-08 48.7 5.2 85 39-151 1-85 (136)
341 PRK10637 cysG siroheme synthas 96.6 0.0073 1.6E-07 56.7 7.5 92 32-128 8-103 (457)
342 PRK10206 putative oxidoreducta 96.6 0.0048 1E-07 55.7 6.0 66 38-103 3-75 (344)
343 TIGR02853 spore_dpaA dipicolin 96.6 0.027 5.8E-07 49.8 10.6 105 36-148 1-115 (287)
344 TIGR01202 bchC 2-desacetyl-2-h 96.5 0.007 1.5E-07 53.5 6.9 87 35-128 144-231 (308)
345 PF03447 NAD_binding_3: Homose 96.5 0.0026 5.7E-08 48.2 3.6 100 43-147 1-112 (117)
346 PRK08192 aspartate carbamoyltr 96.5 0.017 3.6E-07 52.3 9.3 67 33-99 156-233 (338)
347 COG0673 MviM Predicted dehydro 96.5 0.0054 1.2E-07 54.6 6.1 68 36-103 3-78 (342)
348 cd00300 LDH_like L-lactate deh 96.5 0.01 2.2E-07 52.7 7.7 90 39-129 1-116 (300)
349 PRK07200 aspartate/ornithine c 96.5 0.024 5.2E-07 52.3 10.3 67 34-100 185-270 (395)
350 PLN02514 cinnamyl-alcohol dehy 96.5 0.009 1.9E-07 53.9 7.5 89 35-128 180-275 (357)
351 TIGR02355 moeB molybdopterin s 96.5 0.0073 1.6E-07 51.9 6.5 92 32-127 20-145 (240)
352 PRK05562 precorrin-2 dehydroge 96.5 0.0094 2E-07 50.7 7.0 92 32-128 21-116 (223)
353 PRK06349 homoserine dehydrogen 96.5 0.013 2.8E-07 54.5 8.4 108 37-148 4-125 (426)
354 TIGR03201 dearomat_had 6-hydro 96.5 0.008 1.7E-07 53.9 6.8 46 35-80 166-211 (349)
355 cd05283 CAD1 Cinnamyl alcohol 96.5 0.013 2.8E-07 52.2 8.0 89 35-128 169-263 (337)
356 KOG0022 Alcohol dehydrogenase, 96.5 0.0043 9.2E-08 55.1 4.7 53 35-87 192-245 (375)
357 COG2910 Putative NADH-flavin r 96.4 0.01 2.2E-07 49.0 6.5 65 37-101 1-71 (211)
358 PRK12550 shikimate 5-dehydroge 96.4 0.013 2.7E-07 51.4 7.4 65 36-102 122-188 (272)
359 PF03435 Saccharop_dh: Sacchar 96.4 0.0031 6.7E-08 57.6 3.6 63 39-101 1-76 (386)
360 COG1063 Tdh Threonine dehydrog 96.4 0.012 2.5E-07 53.3 7.3 89 35-128 168-269 (350)
361 cd08281 liver_ADH_like1 Zinc-d 96.4 0.0098 2.1E-07 53.8 6.8 89 35-128 191-290 (371)
362 cd01492 Aos1_SUMO Ubiquitin ac 96.4 0.0071 1.5E-07 50.4 5.4 38 32-69 17-55 (197)
363 TIGR02717 AcCoA-syn-alpha acet 96.3 0.039 8.5E-07 51.7 10.9 110 34-151 5-126 (447)
364 cd01487 E1_ThiF_like E1_ThiF_l 96.3 0.016 3.5E-07 47.3 7.4 78 38-116 1-111 (174)
365 PRK08644 thiamine biosynthesis 96.3 0.0088 1.9E-07 50.5 5.9 37 32-68 24-61 (212)
366 PRK04690 murD UDP-N-acetylmura 96.3 0.011 2.4E-07 55.7 7.1 112 34-145 6-140 (468)
367 cd01338 MDH_choloroplast_like 96.3 0.037 8E-07 49.7 10.1 99 37-137 3-135 (322)
368 CHL00194 ycf39 Ycf39; Provisio 96.3 0.01 2.2E-07 52.6 6.5 65 37-101 1-73 (317)
369 PRK04308 murD UDP-N-acetylmura 96.3 0.013 2.9E-07 54.5 7.5 115 33-147 2-137 (445)
370 PF02629 CoA_binding: CoA bind 96.3 0.0058 1.3E-07 44.8 4.0 66 36-102 3-72 (96)
371 TIGR01772 MDH_euk_gproteo mala 96.3 0.015 3.2E-07 52.1 7.3 91 38-129 1-117 (312)
372 PLN02740 Alcohol dehydrogenase 96.3 0.015 3.2E-07 53.0 7.5 47 35-81 198-245 (381)
373 PF05222 AlaDh_PNT_N: Alanine 96.3 0.046 9.9E-07 42.9 9.2 97 50-156 18-118 (136)
374 TIGR02825 B4_12hDH leukotriene 96.2 0.012 2.7E-07 51.9 6.7 89 35-129 138-238 (325)
375 COG3288 PntA NAD/NADP transhyd 96.2 0.0059 1.3E-07 54.0 4.4 95 33-128 161-281 (356)
376 TIGR03451 mycoS_dep_FDH mycoth 96.2 0.014 3.1E-07 52.4 7.1 89 35-128 176-276 (358)
377 cd08234 threonine_DH_like L-th 96.2 0.012 2.7E-07 51.8 6.6 92 35-131 159-260 (334)
378 cd01486 Apg7 Apg7 is an E1-lik 96.2 0.011 2.5E-07 52.4 6.1 31 38-68 1-32 (307)
379 PLN02602 lactate dehydrogenase 96.2 0.02 4.3E-07 52.0 7.9 92 37-129 38-155 (350)
380 PLN00106 malate dehydrogenase 96.2 0.016 3.4E-07 52.1 7.1 97 35-131 17-138 (323)
381 cd08237 ribitol-5-phosphate_DH 96.2 0.022 4.7E-07 51.1 8.0 90 35-128 163-256 (341)
382 PRK08223 hypothetical protein; 96.2 0.021 4.5E-07 50.4 7.6 93 32-127 23-150 (287)
383 PRK01368 murD UDP-N-acetylmura 96.2 0.017 3.8E-07 54.2 7.6 111 34-146 4-130 (454)
384 cd05294 LDH-like_MDH_nadp A la 96.2 0.038 8.2E-07 49.3 9.5 64 37-101 1-81 (309)
385 PRK08328 hypothetical protein; 96.2 0.018 4E-07 49.1 7.2 37 32-68 23-60 (231)
386 PLN02383 aspartate semialdehyd 96.2 0.015 3.3E-07 52.7 6.9 87 35-128 6-100 (344)
387 COG0078 ArgF Ornithine carbamo 96.2 0.06 1.3E-06 47.6 10.3 95 34-128 151-270 (310)
388 TIGR01087 murD UDP-N-acetylmur 96.2 0.046 1E-06 50.6 10.3 109 38-147 1-129 (433)
389 cd08242 MDR_like Medium chain 96.2 0.019 4E-07 50.5 7.3 89 35-128 155-245 (319)
390 PRK14804 ornithine carbamoyltr 96.1 0.024 5.1E-07 50.7 7.9 68 33-100 150-226 (311)
391 KOG3124 Pyrroline-5-carboxylat 96.1 0.0087 1.9E-07 51.6 4.7 95 37-133 1-100 (267)
392 cd08245 CAD Cinnamyl alcohol d 96.1 0.02 4.4E-07 50.5 7.2 90 35-129 162-257 (330)
393 cd01337 MDH_glyoxysomal_mitoch 96.1 0.026 5.6E-07 50.4 7.9 93 37-130 1-119 (310)
394 cd08296 CAD_like Cinnamyl alco 96.1 0.022 4.8E-07 50.5 7.5 89 35-128 163-259 (333)
395 PRK15182 Vi polysaccharide bio 96.1 0.044 9.6E-07 51.0 9.7 96 32-132 310-416 (425)
396 PRK10309 galactitol-1-phosphat 96.1 0.018 3.8E-07 51.5 6.7 46 35-80 160-206 (347)
397 PRK03803 murD UDP-N-acetylmura 96.0 0.07 1.5E-06 49.8 10.9 111 35-146 5-134 (448)
398 cd08255 2-desacetyl-2-hydroxye 96.0 0.023 5E-07 48.8 7.2 91 35-130 97-192 (277)
399 PRK06392 homoserine dehydrogen 96.0 0.034 7.4E-07 50.0 8.4 111 37-148 1-137 (326)
400 PRK03806 murD UDP-N-acetylmura 96.0 0.023 5E-07 52.8 7.6 113 33-145 3-130 (438)
401 TIGR02818 adh_III_F_hyde S-(hy 96.0 0.02 4.3E-07 51.9 6.9 46 35-80 185-231 (368)
402 PRK14874 aspartate-semialdehyd 96.0 0.019 4.1E-07 51.7 6.7 88 36-129 1-95 (334)
403 PF05368 NmrA: NmrA-like famil 96.0 0.011 2.5E-07 49.7 4.9 65 39-103 1-75 (233)
404 PRK12769 putative oxidoreducta 96.0 0.023 5E-07 55.7 7.7 69 34-102 325-422 (654)
405 PLN02948 phosphoribosylaminoim 96.0 0.017 3.6E-07 56.0 6.5 70 32-101 18-92 (577)
406 cd08295 double_bond_reductase_ 96.0 0.023 4.9E-07 50.6 7.0 88 35-128 151-251 (338)
407 COG2227 UbiG 2-polyprenyl-3-me 96.0 0.025 5.4E-07 48.5 6.7 87 34-126 58-159 (243)
408 PRK13376 pyrB bifunctional asp 95.9 0.049 1.1E-06 52.0 9.3 96 33-128 171-293 (525)
409 PRK05442 malate dehydrogenase; 95.9 0.084 1.8E-06 47.5 10.4 65 37-101 5-89 (326)
410 PLN03154 putative allyl alcoho 95.9 0.022 4.7E-07 51.3 6.7 88 35-128 158-258 (348)
411 cd08233 butanediol_DH_like (2R 95.9 0.039 8.5E-07 49.3 8.3 89 35-128 172-272 (351)
412 PRK08265 short chain dehydroge 95.9 0.022 4.8E-07 48.8 6.5 38 33-70 3-41 (261)
413 cd08277 liver_alcohol_DH_like 95.9 0.026 5.6E-07 51.0 7.2 47 34-80 183-230 (365)
414 cd08293 PTGR2 Prostaglandin re 95.9 0.026 5.6E-07 50.1 7.1 87 36-128 155-254 (345)
415 TIGR01161 purK phosphoribosyla 95.9 0.014 3.1E-07 52.6 5.5 62 38-99 1-67 (352)
416 cd08301 alcohol_DH_plants Plan 95.9 0.032 7E-07 50.3 7.6 46 35-80 187-233 (369)
417 PRK11064 wecC UDP-N-acetyl-D-m 95.9 0.028 6E-07 52.2 7.3 71 31-102 315-396 (415)
418 cd01483 E1_enzyme_family Super 95.9 0.097 2.1E-06 40.9 9.4 32 38-69 1-33 (143)
419 cd08231 MDR_TM0436_like Hypoth 95.8 0.027 5.8E-07 50.6 7.0 89 35-128 177-280 (361)
420 cd08289 MDR_yhfp_like Yhfp put 95.8 0.034 7.4E-07 48.8 7.5 46 35-80 146-192 (326)
421 PRK07231 fabG 3-ketoacyl-(acyl 95.8 0.019 4.2E-07 48.3 5.7 38 33-70 2-40 (251)
422 cd00704 MDH Malate dehydrogena 95.8 0.059 1.3E-06 48.4 8.9 99 37-137 1-133 (323)
423 PRK05600 thiamine biosynthesis 95.8 0.012 2.6E-07 53.8 4.6 84 32-116 37-154 (370)
424 TIGR01381 E1_like_apg7 E1-like 95.8 0.025 5.4E-07 55.0 6.8 37 32-68 334-371 (664)
425 cd05284 arabinose_DH_like D-ar 95.8 0.043 9.4E-07 48.5 8.0 91 35-130 167-268 (340)
426 PRK08762 molybdopterin biosynt 95.8 0.033 7.2E-07 50.9 7.3 37 32-68 131-168 (376)
427 cd08298 CAD2 Cinnamyl alcohol 95.7 0.035 7.6E-07 48.9 7.2 89 35-128 167-256 (329)
428 cd05290 LDH_3 A subgroup of L- 95.7 0.032 7E-07 49.7 6.9 64 38-101 1-77 (307)
429 COG2344 AT-rich DNA-binding pr 95.7 0.0072 1.6E-07 49.8 2.5 66 37-102 85-156 (211)
430 cd08269 Zn_ADH9 Alcohol dehydr 95.7 0.051 1.1E-06 47.2 7.9 89 35-128 129-229 (312)
431 COG0281 SfcA Malic enzyme [Ene 95.7 0.056 1.2E-06 49.8 8.2 154 31-204 194-370 (432)
432 cd08260 Zn_ADH6 Alcohol dehydr 95.7 0.042 9E-07 48.9 7.4 90 35-129 165-265 (345)
433 KOG0024 Sorbitol dehydrogenase 95.6 0.047 1E-06 48.8 7.4 127 35-179 169-298 (354)
434 PRK12809 putative oxidoreducta 95.6 0.039 8.4E-07 54.0 7.7 69 34-102 308-405 (639)
435 PRK07877 hypothetical protein; 95.6 0.031 6.8E-07 55.3 7.0 84 32-117 103-220 (722)
436 PRK04663 murD UDP-N-acetylmura 95.6 0.13 2.9E-06 47.8 10.8 111 34-146 4-134 (438)
437 PRK03815 murD UDP-N-acetylmura 95.6 0.093 2E-06 48.5 9.7 104 37-144 1-113 (401)
438 PRK05786 fabG 3-ketoacyl-(acyl 95.6 0.021 4.5E-07 47.8 5.0 38 33-70 2-40 (238)
439 PRK12862 malic enzyme; Reviewe 95.6 0.1 2.3E-06 52.0 10.5 129 31-179 188-333 (763)
440 PLN02827 Alcohol dehydrogenase 95.6 0.044 9.4E-07 50.0 7.4 47 35-81 193-240 (378)
441 cd08274 MDR9 Medium chain dehy 95.6 0.052 1.1E-06 48.2 7.7 87 35-128 177-273 (350)
442 cd05280 MDR_yhdh_yhfp Yhdh and 95.6 0.058 1.3E-06 47.1 7.9 45 36-80 147-192 (325)
443 TIGR01851 argC_other N-acetyl- 95.6 0.057 1.2E-06 48.2 7.7 77 37-128 2-80 (310)
444 cd08300 alcohol_DH_class_III c 95.5 0.039 8.5E-07 49.9 6.9 46 35-80 186-232 (368)
445 PF04016 DUF364: Domain of unk 95.5 0.05 1.1E-06 43.2 6.6 87 34-128 9-95 (147)
446 PRK05597 molybdopterin biosynt 95.5 0.018 3.9E-07 52.4 4.4 37 32-68 24-61 (355)
447 PRK07411 hypothetical protein; 95.4 0.039 8.5E-07 50.8 6.6 88 32-120 34-155 (390)
448 PRK11863 N-acetyl-gamma-glutam 95.4 0.057 1.2E-06 48.3 7.3 76 37-128 3-81 (313)
449 PLN02662 cinnamyl-alcohol dehy 95.4 0.06 1.3E-06 47.3 7.5 67 35-101 3-85 (322)
450 PRK07232 bifunctional malic en 95.4 0.23 5E-06 49.5 12.1 134 31-179 180-325 (752)
451 PRK10083 putative oxidoreducta 95.4 0.058 1.3E-06 47.7 7.5 90 35-129 160-260 (339)
452 PLN02819 lysine-ketoglutarate 95.4 0.051 1.1E-06 55.8 7.7 94 33-128 200-338 (1042)
453 PLN00112 malate dehydrogenase 95.4 0.17 3.8E-06 47.3 10.7 101 37-139 101-235 (444)
454 cd08285 NADP_ADH NADP(H)-depen 95.4 0.055 1.2E-06 48.3 7.3 89 35-128 166-266 (351)
455 PLN03209 translocon at the inn 95.4 0.03 6.6E-07 53.9 5.8 69 34-102 78-169 (576)
456 PF00107 ADH_zinc_N: Zinc-bind 95.4 0.0087 1.9E-07 45.6 1.7 78 46-128 1-89 (130)
457 cd08294 leukotriene_B4_DH_like 95.4 0.052 1.1E-06 47.6 6.9 88 35-128 143-241 (329)
458 TIGR01759 MalateDH-SF1 malate 95.4 0.055 1.2E-06 48.6 7.1 65 37-101 4-88 (323)
459 KOG0399 Glutamate synthase [Am 95.3 0.09 1.9E-06 54.0 9.0 84 16-103 1769-1881(2142)
460 cd08284 FDH_like_2 Glutathione 95.3 0.059 1.3E-06 47.7 7.2 91 35-130 167-268 (344)
461 PRK15076 alpha-galactosidase; 95.3 0.029 6.2E-07 52.4 5.4 66 37-102 2-85 (431)
462 PRK02705 murD UDP-N-acetylmura 95.3 0.057 1.2E-06 50.4 7.4 109 38-146 2-135 (459)
463 TIGR01318 gltD_gamma_fam gluta 95.3 0.086 1.9E-06 49.6 8.6 70 34-103 139-237 (467)
464 PRK14805 ornithine carbamoyltr 95.3 0.17 3.6E-06 45.1 9.9 67 33-100 144-222 (302)
465 PRK04523 N-acetylornithine car 95.3 0.069 1.5E-06 48.2 7.5 68 33-100 165-252 (335)
466 TIGR01082 murC UDP-N-acetylmur 95.3 0.05 1.1E-06 50.8 6.8 109 38-146 1-125 (448)
467 cd08270 MDR4 Medium chain dehy 95.3 0.076 1.6E-06 46.0 7.6 88 35-128 132-222 (305)
468 PRK09422 ethanol-active dehydr 95.3 0.077 1.7E-06 46.9 7.7 89 35-128 162-261 (338)
469 COG1062 AdhC Zn-dependent alco 95.3 0.061 1.3E-06 48.4 6.9 89 35-128 185-285 (366)
470 PRK08324 short chain dehydroge 95.3 0.035 7.7E-07 54.7 6.0 39 32-70 418-457 (681)
471 PRK12861 malic enzyme; Reviewe 95.2 0.17 3.8E-06 50.3 10.7 94 31-132 184-292 (764)
472 TIGR03466 HpnA hopanoid-associ 95.2 0.035 7.6E-07 48.6 5.3 65 37-101 1-73 (328)
473 PF00899 ThiF: ThiF family; I 95.2 0.021 4.6E-07 44.3 3.5 34 36-69 2-36 (135)
474 COG0604 Qor NADPH:quinone redu 95.2 0.058 1.3E-06 48.4 6.6 87 36-128 143-241 (326)
475 cd01491 Ube1_repeat1 Ubiquitin 95.2 0.075 1.6E-06 47.0 7.1 38 32-69 15-53 (286)
476 cd01336 MDH_cytoplasmic_cytoso 95.2 0.051 1.1E-06 48.9 6.2 65 37-101 3-87 (325)
477 TIGR01758 MDH_euk_cyt malate d 95.1 0.038 8.1E-07 49.7 5.2 64 38-101 1-84 (324)
478 PRK07806 short chain dehydroge 95.1 0.1 2.2E-06 44.0 7.6 37 33-69 3-40 (248)
479 PRK08374 homoserine dehydrogen 95.1 0.075 1.6E-06 48.0 7.0 107 37-148 3-143 (336)
480 PRK07878 molybdopterin biosynt 95.0 0.058 1.3E-06 49.7 6.4 37 32-68 38-75 (392)
481 cd08232 idonate-5-DH L-idonate 95.0 0.079 1.7E-06 46.9 7.0 89 35-128 165-262 (339)
482 TIGR00112 proC pyrroline-5-car 95.0 0.043 9.3E-07 47.2 5.1 81 60-144 10-91 (245)
483 PF00070 Pyr_redox: Pyridine n 95.0 0.055 1.2E-06 37.9 4.8 33 38-70 1-33 (80)
484 TIGR01296 asd_B aspartate-semi 95.0 0.045 9.7E-07 49.5 5.4 86 38-128 1-92 (339)
485 PRK14573 bifunctional D-alanyl 94.9 0.071 1.5E-06 53.6 7.2 110 37-146 5-130 (809)
486 cd08246 crotonyl_coA_red croto 94.9 0.11 2.5E-06 47.2 8.0 46 35-80 193-239 (393)
487 PRK15057 UDP-glucose 6-dehydro 94.9 0.086 1.9E-06 48.6 7.2 65 34-101 294-368 (388)
488 cd08286 FDH_like_ADH2 formalde 94.9 0.095 2.1E-06 46.6 7.3 89 35-128 166-266 (345)
489 cd05286 QOR2 Quinone oxidoredu 94.9 0.088 1.9E-06 45.3 6.8 90 35-130 136-237 (320)
490 PRK06128 oxidoreductase; Provi 94.9 0.091 2E-06 46.1 7.0 36 33-68 52-88 (300)
491 cd08278 benzyl_alcohol_DH Benz 94.9 0.14 3E-06 46.2 8.3 90 35-129 186-286 (365)
492 TIGR02819 fdhA_non_GSH formald 94.8 0.14 3E-06 47.1 8.3 93 35-128 185-299 (393)
493 PRK06182 short chain dehydroge 94.8 0.063 1.4E-06 46.2 5.8 67 35-101 2-83 (273)
494 PRK05866 short chain dehydroge 94.8 0.056 1.2E-06 47.4 5.5 39 31-69 35-74 (293)
495 cd05285 sorbitol_DH Sorbitol d 94.8 0.092 2E-06 46.7 6.9 90 34-128 161-265 (343)
496 PRK14851 hypothetical protein; 94.8 0.081 1.7E-06 52.2 6.9 37 32-68 39-76 (679)
497 PRK12771 putative glutamate sy 94.7 0.049 1.1E-06 52.4 5.3 69 34-102 135-232 (564)
498 PRK12814 putative NADPH-depend 94.7 0.13 2.8E-06 50.5 8.2 69 35-103 192-289 (652)
499 PRK08040 putative semialdehyde 94.7 0.079 1.7E-06 47.9 6.2 87 35-128 3-97 (336)
500 TIGR01532 E4PD_g-proteo D-eryt 94.7 0.073 1.6E-06 47.9 5.9 30 38-67 1-34 (325)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-56 Score=394.21 Aligned_cols=203 Identities=34% Similarity=0.579 Sum_probs=188.3
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
++||+++|+++.+++.+++|.|.+.. ..+.+|.|||+||||+|+||+.+|+++++|||+|++||+.. +.+.....++
T Consensus 109 ~~~L~~~R~~~~~~~~~~~g~W~~~~--~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~-~~~~~~~~~~ 185 (324)
T COG0111 109 ALLLALARRIPDADASQRRGEWDRKA--FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYS-PRERAGVDGV 185 (324)
T ss_pred HHHHHHhcCchhhHHHHHcCCccccc--cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCC-chhhhccccc
Confidence 47999999999999999999998732 34679999999999999999999999999999999999943 2333444466
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||+
T Consensus 186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl 265 (324)
T COG0111 186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPL 265 (324)
T ss_pred eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCC
Confidence 66779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC
Q 026360 161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN 208 (240)
Q Consensus 161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~ 208 (240)
|.+||||++|||++|||+||+|.|+++++.. .+.+|+.+|+.|.++
T Consensus 266 ~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~--~~~~~i~~~l~g~~~ 311 (324)
T COG0111 266 PADSPLWDLPNVILTPHIGGSTDEAQERVAE--IVAENIVRYLAGGPV 311 (324)
T ss_pred CCCChhhcCCCeEECCcccccCHHHHHHHHH--HHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999 999999999999975
No 2
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=4.7e-53 Score=376.63 Aligned_cols=208 Identities=30% Similarity=0.507 Sum_probs=188.1
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccC-cccccccccCCCeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCCChhHHHhc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKET 78 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~-~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~~~~~~~~~ 78 (240)
+|||++.|++...++.+++|.|... .....+.+|.||++||||+|+||+.+|++++ +|||+|++||+.. +.+.....
T Consensus 109 ~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~-~~~~~~~~ 187 (323)
T PRK15409 109 ALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH-HKEAEERF 187 (323)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC-chhhHHhc
Confidence 5899999999999999999999642 1112367899999999999999999999998 9999999999864 23333445
Q ss_pred CceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC
Q 026360 79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (240)
Q Consensus 79 g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 158 (240)
++... ++++++++||+|++|+|+|++|+++++++.|++||||++|||+|||++||++||++||++|+|.||+||||++|
T Consensus 188 ~~~~~-~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~E 266 (323)
T PRK15409 188 NARYC-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQE 266 (323)
T ss_pred CcEec-CHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCC
Confidence 66655 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360 159 PAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK 212 (240)
Q Consensus 159 P~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~ 212 (240)
|++.++|||.+|||++|||+||.|.++..++.. .+.+|+.+|++|+++ +.||
T Consensus 267 P~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 267 PLSVDSPLLSLPNVVAVPHIGSATHETRYNMAA--CAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred CCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHH--HHHHHHHHHHcCCCCCcccC
Confidence 999999999999999999999999999999999 999999999999865 5555
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.8e-52 Score=371.92 Aligned_cols=208 Identities=38% Similarity=0.664 Sum_probs=191.4
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCc--ccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET 78 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~--~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~ 78 (240)
+|||++.|++.++++++++|.|...+ ....+.+++|||+||||+|+||+++|+++++|||+|++||+++. ++..+..
T Consensus 109 aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~ 187 (324)
T COG1052 109 ALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKEL 187 (324)
T ss_pred HHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhc
Confidence 58999999999999999999998753 22356789999999999999999999999999999999999875 5555666
Q ss_pred CceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC
Q 026360 79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (240)
Q Consensus 79 g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 158 (240)
++.+. ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||++|||+.|
T Consensus 188 ~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~E 266 (324)
T COG1052 188 GARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENE 266 (324)
T ss_pred Cceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCC
Confidence 67777 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC---eEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360 159 PAPKDHPWRYMPN---QAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK 212 (240)
Q Consensus 159 P~~~~~~l~~~~n---v~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~ 212 (240)
|.+.++||+.++| +++|||+|++|.|++.++.. .+.+|+.+|++|+.. +.|+
T Consensus 267 p~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~--~~~~nl~~~~~g~~~~~~v~ 322 (324)
T COG1052 267 PALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAE--LALENLEAFFDGGVPPNEVN 322 (324)
T ss_pred CCCCChhHhhccCCCCEEEccccccccHHHHHHHHH--HHHHHHHHHHcCCCCCCCCC
Confidence 9988999998887 99999999999999999999 999999999998755 5554
No 4
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-52 Score=378.36 Aligned_cols=212 Identities=79% Similarity=1.297 Sum_probs=194.6
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
++||++.|++.+.++.+++|.|........+++|.|++|||||+|+||+.+|++|++||++|++||++..+.+.....|+
T Consensus 164 ~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 164 MRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred HHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence 58999999999999999999997533223467899999999999999999999999999999999987655555556677
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||++|||++||+
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPl 323 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPA 323 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 76679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccc
Q 026360 161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYC 214 (240)
Q Consensus 161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 214 (240)
|.+||||.+||+++|||+||.|.+++.++.. .+.+|+.+|++|+++.+.+..
T Consensus 324 p~d~pL~~~pNvilTPHiag~t~~~~~r~~~--~~~~nl~~~~~G~~~~~~~~i 375 (386)
T PLN03139 324 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAA--GVKDMLDRYFKGEDFPAQNYI 375 (386)
T ss_pred CCCChhhcCCCeEEcccccccCHHHHHHHHH--HHHHHHHHHHcCCCCCCccee
Confidence 9999999999999999999999999999999 999999999999987665543
No 5
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-52 Score=371.47 Aligned_cols=203 Identities=28% Similarity=0.445 Sum_probs=183.5
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcc----cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~ 76 (240)
++||+++|++...++.+++|.|..... ...+.+|.||++||||+|+||+.+|+++++|||+|++||+.... .
T Consensus 109 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~--- 184 (317)
T PRK06487 109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A--- 184 (317)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c---
Confidence 479999999999999999999974321 11246899999999999999999999999999999999985321 1
Q ss_pred hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (240)
Q Consensus 77 ~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~ 156 (240)
.... .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||+
T Consensus 185 --~~~~-~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 261 (317)
T PRK06487 185 --RPDR-LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLS 261 (317)
T ss_pred --cccc-cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 1223 3899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC--CCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCc
Q 026360 157 PQPAPKDHPWRY--MPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELK 212 (240)
Q Consensus 157 ~EP~~~~~~l~~--~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 212 (240)
+||++.++|||. +|||++|||+||+|.++..++.. .+.+|+.+|++|++++.+|
T Consensus 262 ~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~v~ 317 (317)
T PRK06487 262 VEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVG--QLAENARAFFAGKPLRVVS 317 (317)
T ss_pred CCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHH--HHHHHHHHHHcCCCCcCCC
Confidence 999999999995 89999999999999999999999 9999999999998876553
No 6
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-52 Score=376.73 Aligned_cols=210 Identities=47% Similarity=0.861 Sum_probs=192.2
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
++||++.|++...++.+++|.|........+++|.|++|||||+|+||+.+|++|++|||+|++||++..+.+.....|+
T Consensus 157 ~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~ 236 (385)
T PRK07574 157 MMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL 236 (385)
T ss_pred HHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence 58999999999999999999997543222467899999999999999999999999999999999997644444455677
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||++||++|+|.||++|||++||+
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl 316 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA 316 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence 66669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCc
Q 026360 161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELK 212 (240)
Q Consensus 161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 212 (240)
|.+||||.+||+++|||+||+|.++++++.. .+.+|+.+|++|+++....
T Consensus 317 p~d~pL~~~pNvilTPHiag~T~e~~~~~~~--~~~~ni~~~~~G~~~~~~~ 366 (385)
T PRK07574 317 PADHPWRTMPRNGMTPHISGTTLSAQARYAA--GTREILECFFEGRPIRDEY 366 (385)
T ss_pred CCCChHHhCCCeEECCccccCcHHHHHHHHH--HHHHHHHHHHcCCCCCCCc
Confidence 9999999999999999999999999999999 9999999999998775443
No 7
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-52 Score=368.00 Aligned_cols=199 Identities=23% Similarity=0.365 Sum_probs=180.4
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCccc----ccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVA----YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~----~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~ 76 (240)
+|||+++|++...++.+++|.|...... ..+++|.||++||||+|+||+.+|+++++|||+|++||++....
T Consensus 106 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---- 181 (311)
T PRK08410 106 AMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---- 181 (311)
T ss_pred HHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----
Confidence 5899999999999999999999743211 12468999999999999999999999999999999999864221
Q ss_pred hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (240)
Q Consensus 77 ~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~ 156 (240)
..++... ++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||++||++||++|+|. |+||||+
T Consensus 182 ~~~~~~~-~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 182 NEEYERV-SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred ccCceee-cHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 2244444 8999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCCCCCCCCC---CCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCC
Q 026360 157 PQPAPKDHPWRYM---PNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKS 207 (240)
Q Consensus 157 ~EP~~~~~~l~~~---~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~ 207 (240)
+||++.++|||.+ |||++|||+||+|.++..++.. .+.+|+.+|++|++
T Consensus 260 ~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~--~~~~nl~~~~~g~~ 311 (311)
T PRK08410 260 KEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIE--KVKENIKDFLEGGK 311 (311)
T ss_pred CCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHH--HHHHHHHHHHcCCC
Confidence 9999999999987 8999999999999999999999 89999999999863
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-51 Score=377.39 Aligned_cols=225 Identities=27% Similarity=0.468 Sum_probs=200.8
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
++||+++|++..+++.+++|.|.... ..+.+|.||++||||+|+||+.+|+++++|||+|++||+++... ..++
T Consensus 118 ~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~ 191 (409)
T PRK11790 118 GEIILLLRGIPEKNAKAHRGGWNKSA--AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNA 191 (409)
T ss_pred HHHHHHHcChHHHHHHHHcCcccccc--cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCc
Confidence 57999999999999999999997542 24678999999999999999999999999999999999854211 1234
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
....++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus 192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~ 271 (409)
T PRK11790 192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK 271 (409)
T ss_pred eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 55569999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC----CCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccchhhhc---ccceeEeeeCCcc
Q 026360 161 PK----DHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYCSYAML---RESRICLTDTSRE 232 (240)
Q Consensus 161 ~~----~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~~~~~---~~~r~~~~~~~~~ 232 (240)
+. ++|||.+|||++|||+||+|.++..++.. .+.+|+.+|++|+++ +.||++...+- ..||+++.|.+..
T Consensus 272 ~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~--~~~~nl~~~~~~~~~~~~vn~~~~~~~~~~~~~rlii~h~d~p 349 (409)
T PRK11790 272 SNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGL--EVAGKLVKYSDNGSTLSAVNFPEVSLPEHPGGHRLLHIHENRP 349 (409)
T ss_pred CccccccchhhcCCCEEECCcCCCCHHHHHHHHHH--HHHHHHHHHHcCCCcCcceeccccccCCCCCCceEEEEeCCCC
Confidence 76 47999999999999999999999999999 899999999998766 88888765553 2699999987654
Q ss_pred e
Q 026360 233 K 233 (240)
Q Consensus 233 ~ 233 (240)
.
T Consensus 350 G 350 (409)
T PRK11790 350 G 350 (409)
T ss_pred C
Confidence 3
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=7.2e-51 Score=361.60 Aligned_cols=199 Identities=26% Similarity=0.426 Sum_probs=178.8
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcc----cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~ 76 (240)
++||+++|++...++.+++|.|..... ...+.+|.||++||||+|.||+.+|+++++|||+|++||+.... .
T Consensus 108 ~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-~--- 183 (314)
T PRK06932 108 GMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-V--- 183 (314)
T ss_pred HHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-c---
Confidence 479999999999999999999964311 11346899999999999999999999999999999999975321 1
Q ss_pred hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (240)
Q Consensus 77 ~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~ 156 (240)
.... ..++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||+
T Consensus 184 -~~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~ 261 (314)
T PRK06932 184 -CREG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLV 261 (314)
T ss_pred -cccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence 1112 34899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC----CCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCC
Q 026360 157 PQPAPKDHPWR----YMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKS 207 (240)
Q Consensus 157 ~EP~~~~~~l~----~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~ 207 (240)
+||++.++||| .+|||++|||+||+|.++.+++.. .+.+|+.+|++|++
T Consensus 262 ~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~~g~ 314 (314)
T PRK06932 262 KEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVN--KVAQNIEEFVQQGK 314 (314)
T ss_pred CCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHH--HHHHHHHHHHhcCC
Confidence 99999999998 489999999999999999999999 99999999998763
No 10
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2e-50 Score=363.12 Aligned_cols=206 Identities=30% Similarity=0.378 Sum_probs=185.0
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH----
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---- 76 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~---- 76 (240)
++||++.|++....+.+++|.|... .+.+|.|+++||||+|.||+.+|++|++|||+|++||++........
T Consensus 128 ~l~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~ 203 (347)
T PLN02928 128 YLMLGLLRKQNEMQISLKARRLGEP----IGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP 203 (347)
T ss_pred HHHHHHHhCHHHHHHHHHcCCcccc----cccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc
Confidence 4799999999999999999999642 35689999999999999999999999999999999998642211110
Q ss_pred -----h---cCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 77 -----E---TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 77 -----~---~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
. .+. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.
T Consensus 204 ~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 204 NGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred cccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 0 012 2458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCcc
Q 026360 149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKY 213 (240)
Q Consensus 149 ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 213 (240)
||+||||++||++.++|||.+|||++|||+||+|.++.+++.. .+.+|+.+|++|+++..+.+
T Consensus 283 gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~--~~~~nl~~~~~g~~~~~~~~ 345 (347)
T PLN02928 283 GLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGK--IVGDAALQLHAGRPLTGIEF 345 (347)
T ss_pred EEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHH--HHHHHHHHHHCCCCCCceee
Confidence 9999999999999999999999999999999999999999999 89999999999998876654
No 11
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=3.7e-50 Score=359.79 Aligned_cols=208 Identities=32% Similarity=0.547 Sum_probs=187.0
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcc-----cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~ 75 (240)
++||++.|++..+++.+++|.|..... ...+.+|.|++|||||+|.||+.+|++|++||++|++||+++.. ...
T Consensus 110 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~ 188 (333)
T PRK13243 110 ALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP-EAE 188 (333)
T ss_pred HHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH
Confidence 479999999999999999999974210 11357899999999999999999999999999999999987533 233
Q ss_pred HhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 76 ~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
...++.. .++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||+++|+++|++|+|.||+||||
T Consensus 189 ~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~ 267 (333)
T PRK13243 189 KELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVF 267 (333)
T ss_pred HHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccC
Confidence 3456554 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCcc
Q 026360 156 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKY 213 (240)
Q Consensus 156 ~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~ 213 (240)
++||++ ++|||.+|||++|||+||+|.++..++.. .+.+|+.+|++|+++ +.|+.
T Consensus 268 ~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~v~~ 323 (333)
T PRK13243 268 EEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAE--LVAENLIAFKRGEVPPTLVNR 323 (333)
T ss_pred CCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHH--HHHHHHHHHHcCCCCCcccCH
Confidence 999987 89999999999999999999999999999 899999999999865 66654
No 12
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=5.2e-50 Score=363.87 Aligned_cols=227 Identities=20% Similarity=0.269 Sum_probs=191.1
Q ss_pred CcHHHHHhCChHHHHHHHcCCCcc-CcccccccccCCCeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCCChhH--HH
Q 026360 1 MRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL--EK 76 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~-~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~~~~~--~~ 76 (240)
+|||++.|++..+++.+++|.|.. ......+.+|.|++|||||+|.||+.+|++++ +|||+|++||++...... ..
T Consensus 129 ~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~ 208 (386)
T PLN02306 129 SLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT 208 (386)
T ss_pred HHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh
Confidence 589999999999999999999852 21112367899999999999999999999985 999999999986532111 01
Q ss_pred hcC------------ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 77 ETG------------AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 77 ~~g------------~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
..+ +....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||++||++
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 111 22235899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccch-----hhh
Q 026360 145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYCS-----YAM 218 (240)
Q Consensus 145 g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~-----~~~ 218 (240)
|++.||+||||++||++ ++|||++|||++|||+||+|.++.+++.. .+.+|+.+|++|+++ +.||... .+-
T Consensus 289 g~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~~~~--~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~ 365 (386)
T PLN02306 289 NPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREGMAT--LAALNVLGKLKGYPVWGDPNRVEPFLNENAP 365 (386)
T ss_pred CCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHHHHH--HHHHHHHHHHcCCCCcccccchhhcccccCC
Confidence 99999999999999975 57899999999999999999999999999 899999999999877 7777432 111
Q ss_pred cccceeEeeeCC
Q 026360 219 LRESRICLTDTS 230 (240)
Q Consensus 219 ~~~~r~~~~~~~ 230 (240)
-.--|.|+++.+
T Consensus 366 ~~~~~~~~~~~~ 377 (386)
T PLN02306 366 PPAASPSIVNAK 377 (386)
T ss_pred CCcCCcceechh
Confidence 113677777654
No 13
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=1.1e-50 Score=333.60 Aligned_cols=177 Identities=39% Similarity=0.673 Sum_probs=155.0
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
+|||++.|++..+++.+++|.|.. .....++++.|++|||||+|+||+.+|+++++|||+|++||++......+...++
T Consensus 2 ~l~L~~~R~~~~~~~~~~~~~W~~-~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 2 ALMLALLRRLPEYHEAQRNGEWAS-RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHTTHHHHHHHHHTTBHHH-HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred hHHHHHHhCHHHHHHHHHcCCCCC-CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 589999999999999999999921 1123577999999999999999999999999999999999997644333555666
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||+
T Consensus 81 ~~-~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 159 (178)
T PF02826_consen 81 EY-VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL 159 (178)
T ss_dssp EE-SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred ee-eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence 55 49999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEcCCCC
Q 026360 161 PKDHPWRYMPNQAMTPHVS 179 (240)
Q Consensus 161 ~~~~~l~~~~nv~~TPH~a 179 (240)
+.++|||++||+++|||+|
T Consensus 160 ~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 160 PADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp STTHHHHTSTTEEEESS-T
T ss_pred CCCChHHcCCCEEEeCccC
Confidence 9999999999999999986
No 14
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=4e-49 Score=349.90 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=178.5
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
++||++.|++....+.+++|.|... ...++.|+||||||+|.||+.+|++|++|||+|++||++..........
T Consensus 105 ~~~L~~~r~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~-- 178 (312)
T PRK15469 105 SQVLHWFRRFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSF-- 178 (312)
T ss_pred HHHHHHHcChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceee--
Confidence 4799999999999999999999743 2457999999999999999999999999999999999865332211111
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
....++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||++||++|++.||+||||++||+
T Consensus 179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCC
Confidence 12358999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360 161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK 212 (240)
Q Consensus 161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~ 212 (240)
|.++|||.+|||++|||+||+|.+. ++.. .+.+|+++|.+|+++ +.|+
T Consensus 259 ~~~~pl~~~~nvi~TPHiag~t~~~--~~~~--~~~~n~~~~~~g~~~~~~V~ 307 (312)
T PRK15469 259 PPESPLWQHPRVAITPHVAAVTRPA--EAVE--YISRTIAQLEKGERVCGQVD 307 (312)
T ss_pred CCCChhhcCCCeEECCcCCCCcCHH--HHHH--HHHHHHHHHHcCCCCcccCC
Confidence 9999999999999999999999875 3555 788999999999976 5454
No 15
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=6.6e-49 Score=370.37 Aligned_cols=209 Identities=33% Similarity=0.538 Sum_probs=190.9
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
+|||+++|+++.+++.+++|.|.... ..+.+|.||+|||||+|+||+.+|++|++|||+|++||++. ..+.....|+
T Consensus 105 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~ 181 (525)
T TIGR01327 105 AMLLAAARNIPQADASLKEGEWDRKA--FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPERAEQLGV 181 (525)
T ss_pred HHHHHHhcCHHHHHHHHHcCCccccc--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence 58999999999999999999997532 24678999999999999999999999999999999999863 3344555677
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
...+++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||++||++||++|+|.||+||||++||+
T Consensus 182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP 261 (525)
T ss_pred EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence 76668999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccch
Q 026360 161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYCS 215 (240)
Q Consensus 161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~ 215 (240)
.++|||.+|||++|||+||+|.+++.++.. .+.+|+.+|++|+++ +.||.+.
T Consensus 262 -~~~pL~~~~nvi~TPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~vn~~~ 314 (525)
T TIGR01327 262 -TDNPLFDLDNVIATPHLGASTREAQENVAT--QVAEQVLDALKGLPVPNAVNAPG 314 (525)
T ss_pred -CCChhhcCCCeEECCCccccHHHHHHHHHH--HHHHHHHHHHcCCCCCceeeCCC
Confidence 589999999999999999999999999999 999999999999865 7777653
No 16
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-49 Score=344.55 Aligned_cols=209 Identities=31% Similarity=0.502 Sum_probs=194.6
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
++|++++|+++++...+++|+|++..+ .+.+|.|||+||+|+|+||+.+|++++.+||+|++||+-. +.+.+...|+
T Consensus 113 gli~SLaR~i~~A~~s~k~g~wnr~~~--~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gv 189 (406)
T KOG0068|consen 113 GLILSLARQIGQASASMKEGKWNRVKY--LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGV 189 (406)
T ss_pred HHHHHHhhhcchhheeeecCceeecce--eeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccc
Confidence 479999999999999999999987653 5889999999999999999999999999999999999854 5667777899
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
+.+ +++|++..||+|.+|+|++|+|+++++.+.|++||+|..+||++||++||++||++||++|++.||++|||+.||+
T Consensus 190 q~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp 268 (406)
T KOG0068|consen 190 QLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPP 268 (406)
T ss_pred eee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCC
Confidence 877 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC--CCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccch
Q 026360 161 PK--DHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCS 215 (240)
Q Consensus 161 ~~--~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 215 (240)
.. ++.|.++|||++|||+|++|.|++.+.+. .+.+++..|.+|.....||.+.
T Consensus 269 ~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iai--evaea~~~~~~~~~~g~Vna~~ 323 (406)
T KOG0068|consen 269 KNGWDSELVSHPNVIVTPHLGASTEEAQSRIAI--EVAEAVSDYINGNSAGSVNAPE 323 (406)
T ss_pred ccchhHHHhcCCceeecCccccchHHHHHHHHH--HHHHHHHHHhccCccceechhh
Confidence 75 78899999999999999999999999999 9999999999996557777654
No 17
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=4e-48 Score=365.10 Aligned_cols=207 Identities=33% Similarity=0.551 Sum_probs=190.0
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
+|||+++|+++.+++.+++|.|.... ..+.+|.||+|||||+|+||+.+|+++++|||+|++||++. ..+.....|+
T Consensus 107 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~ 183 (526)
T PRK13581 107 ALMLALARNIPQAHASLKAGKWERKK--FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGV 183 (526)
T ss_pred HHHHHHHcCHHHHHHHHHcCCCCccC--ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence 58999999999999999999997532 24678999999999999999999999999999999999864 3344455677
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
... ++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||++||++||++|+|.||+||||++||+
T Consensus 184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 184 ELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP 262 (526)
T ss_pred EEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence 766 8999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccc
Q 026360 161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYC 214 (240)
Q Consensus 161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~ 214 (240)
+ ++|||.+|||++|||+||+|.+++.++.. .+.+|+.+|++|+++ +.||.+
T Consensus 263 ~-~~pL~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~vn~~ 314 (526)
T PRK13581 263 T-DSPLFELPNVVVTPHLGASTAEAQENVAI--QVAEQVIDALRGGPVPNAVNLP 314 (526)
T ss_pred C-CchhhcCCCeeEcCccccchHHHHHHHHH--HHHHHHHHHHcCCCcCceeeCC
Confidence 6 89999999999999999999999999999 899999999999866 677755
No 18
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-47 Score=337.08 Aligned_cols=201 Identities=22% Similarity=0.386 Sum_probs=180.3
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
+|||+++|++...++.+++|.|... .+.+|.|++|||||+|+||+.+|+++++||++|++||++.... ++
T Consensus 91 ~l~L~l~R~i~~~~~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~ 160 (303)
T PRK06436 91 ALLLAWAKNICENNYNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GI 160 (303)
T ss_pred HHHHHHHcChHHHHHHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------Cc
Confidence 5899999999999999999999753 2468999999999999999999999999999999999864321 22
Q ss_pred e-ecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360 81 K-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (240)
Q Consensus 81 ~-~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 159 (240)
. ...++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|+++|++|++.||+||||++||
T Consensus 161 ~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP 240 (303)
T PRK06436 161 SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP 240 (303)
T ss_pred ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence 2 135899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeEEcCCCC-CCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccchh
Q 026360 160 APKDHPWRYMPNQAMTPHVS-GTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSY 216 (240)
Q Consensus 160 ~~~~~~l~~~~nv~~TPH~a-~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 216 (240)
++.++ .+||+++|||++ ++|.++.+++.. .+.+|+.+|++|++.+.|+...|
T Consensus 241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~V~~~~y 293 (303)
T PRK06436 241 IITET---NPDNVILSPHVAGGMSGEIMQPAVA--LAFENIKNFFEGKPKNIVRKEEY 293 (303)
T ss_pred CCccC---CCCCEEECCccccccCHHHHHHHHH--HHHHHHHHHHcCCCCceEchHHh
Confidence 88776 579999999986 588999999888 89999999999988777765444
No 19
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=2.4e-47 Score=336.58 Aligned_cols=207 Identities=42% Similarity=0.719 Sum_probs=191.7
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
+++|.+.|++..+++++++|.|.+......+..+.||||||+|+|+||+.+|++|++||+.+.+++|++...+.+.+.+.
T Consensus 127 ~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 127 SLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred HHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc
Confidence 46899999999999999999995544445678899999999999999999999999999888888888777777777666
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
+.. ++++++.+||+|++|+|+|++|++++|++.+..||+|++|||++||.++|++++++||++|+|.+++||||++||
T Consensus 207 ~~~-d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP- 284 (336)
T KOG0069|consen 207 EFV-DIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP- 284 (336)
T ss_pred ccc-CHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-
Confidence 644 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCC
Q 026360 161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SEL 211 (240)
Q Consensus 161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v 211 (240)
+.++||+.++|+++|||+|++|.+++.+++. .+..|+.+++.|+++ +++
T Consensus 285 ~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~--~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 285 PVDHPLLTLDNVVILPHIGSATLETREKMAE--IVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred CCCcchhcccceeEecccccCcHHHHHHHHH--HHHHHHHHHHccCCCCCcC
Confidence 8899999999999999999999999999999 999999999999987 444
No 20
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-47 Score=338.12 Aligned_cols=205 Identities=20% Similarity=0.265 Sum_probs=180.6
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
++||++.|++..+++.+++|.|.+... ..+.+|.|++|||||+|.||+.+|+.|+++|++|++||+++..... ..
T Consensus 112 ~l~L~~~R~~~~~~~~~~~~~~~w~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~ 186 (330)
T PRK12480 112 SIALQLVRRFPDIERRVQAHDFTWQAE-IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FL 186 (330)
T ss_pred HHHHHHHHhHHHHHHHHHhCCcccccc-cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hh
Confidence 579999999999999999998754321 2357899999999999999999999999999999999987532211 12
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
....++++++++||+|++|+|++++|.++++++.++.||+|++|||+|||++||++||+++|++|++.||+||||++||+
T Consensus 187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~ 266 (330)
T PRK12480 187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAA 266 (330)
T ss_pred hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCc
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C-------------CCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360 161 P-------------KDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK 212 (240)
Q Consensus 161 ~-------------~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~ 212 (240)
+ ..+|||.+|||++|||+||+|.++..++.. .+.+|+.+|++|+.. +.||
T Consensus 267 ~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~--~~~~n~~~~~~~~~~~~~~~ 330 (330)
T PRK12480 267 YFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVE--GGLNAALSVINTGTCETRLN 330 (330)
T ss_pred cccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHH--HHHHHHHHHHhCCCCcccCC
Confidence 2 124799999999999999999999999999 999999999998865 4443
No 21
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=6.6e-45 Score=325.80 Aligned_cols=205 Identities=22% Similarity=0.323 Sum_probs=180.6
Q ss_pred CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHh-ccCCCEEEEEcCCCCChhHHHhcC
Q 026360 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETG 79 (240)
Q Consensus 1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~g 79 (240)
++||++.|++...++.+++|.|.+... ..+++|.|++|||||+|.||+.+|+.| +++|++|++||++.... .. .+
T Consensus 112 ~~~l~~~R~~~~~~~~~~~~~~~~~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~-~~ 187 (332)
T PRK08605 112 TQAINLVRHFNQIQTKVREHDFRWEPP-ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--AA-TY 187 (332)
T ss_pred HHHHHHhcChHHHHHHHHhCCcccccc-cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--HH-hh
Confidence 479999999999999999998854321 236789999999999999999999999 78999999999865322 11 13
Q ss_pred ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360 80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (240)
Q Consensus 80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 159 (240)
+....++++++++||+|++|+|+++.|+++++.+.++.||+|++|||+|||.++|+++|.++|++|+|.||+||||+.||
T Consensus 188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep 267 (332)
T PRK08605 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER 267 (332)
T ss_pred ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence 44456899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CCCCC-----------CCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCC
Q 026360 160 --APKDH-----------PWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SEL 211 (240)
Q Consensus 160 --~~~~~-----------~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v 211 (240)
+|.++ +||.+|||++|||+||+|.|+.+++.. .+.+|+.+|++|++. +.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~--~~~~n~~~~~~g~~~~~~~ 331 (332)
T PRK08605 268 PLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIV--DALDATLEVLQTGTTRLRV 331 (332)
T ss_pred CccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHH--HHHHHHHHHHcCCCCCCCc
Confidence 35554 499999999999999999999999999 899999999999765 443
No 22
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=1.4e-41 Score=307.13 Aligned_cols=168 Identities=26% Similarity=0.464 Sum_probs=149.2
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh----h
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----T 106 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~----t 106 (240)
+.+|.|++|||||+|+||+.+|++|++|||+|++||+..... ..... ..++++++++||+|++|+|+|++ |
T Consensus 111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~~~-~~~L~ell~~sDiI~lh~PLt~~g~~~T 185 (378)
T PRK15438 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDEGD-FRSLDELVQEADILTFHTPLFKDGPYKT 185 (378)
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccccc-cCCHHHHHhhCCEEEEeCCCCCCccccc
Confidence 347899999999999999999999999999999999743211 11122 35899999999999999999996 9
Q ss_pred hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~ 186 (240)
.++++++.|+.||+|+++||+|||++||++||+++|++|++.||+||||++||. .+++|+..++ ++|||+||+|.|+.
T Consensus 186 ~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~ 263 (378)
T PRK15438 186 LHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGK 263 (378)
T ss_pred ccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHH
Confidence 999999999999999999999999999999999999999999999999999996 4667887665 99999999999999
Q ss_pred HHhhhhHHHHHHHHHHHccCCC
Q 026360 187 VIVHFFPVFMRLFTSFLSHKSN 208 (240)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~g~~~ 208 (240)
.+... .+.+|+.+|+ |.+.
T Consensus 264 ~~~~~--~~~~~l~~~~-~~~~ 282 (378)
T PRK15438 264 ARGTT--QVFEAYSKFI-GHEQ 282 (378)
T ss_pred HHHHH--HHHHHHHHHH-cCcc
Confidence 99988 8999999998 5443
No 23
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.1e-41 Score=306.71 Aligned_cols=168 Identities=29% Similarity=0.493 Sum_probs=152.0
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCCh----hh
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KT 106 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~----~t 106 (240)
+.++.|++|||||+|+||+.+|++++++|++|++||+..... . +.....++++++++||+|++|+|+|+ .|
T Consensus 111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T 185 (381)
T PRK00257 111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPT 185 (381)
T ss_pred CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCccccc
Confidence 457999999999999999999999999999999999853211 1 21223589999999999999999998 59
Q ss_pred hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~ 186 (240)
+++++++.|+.||+|++|||+|||++||++||+++|++|++.+|+||||++||. .++|||.. |+++|||+||+|.|+.
T Consensus 186 ~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 186 RHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGK 263 (381)
T ss_pred cccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999995 56789885 9999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHccCC
Q 026360 187 VIVHFFPVFMRLFTSFLSHKS 207 (240)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~g~~ 207 (240)
.+... .+.+|+.+|+.+.+
T Consensus 264 ~r~~~--~~~~nl~~~~~~~~ 282 (381)
T PRK00257 264 ARGTA--QIYQALCRFFGIPA 282 (381)
T ss_pred HHHHH--HHHHHHHHHHcCCC
Confidence 99998 89999999998864
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.89 E-value=2.5e-23 Score=183.25 Aligned_cols=203 Identities=26% Similarity=0.357 Sum_probs=171.1
Q ss_pred cHHHHHhCChHHHHHHHcCCCccCcc-----cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360 2 RILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76 (240)
Q Consensus 2 ~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~ 76 (240)
.+|.+.|+-.+.++..++|.|..... ......++|.+.|++|+|+.|++++.++++||..|+.||+.- ..-..+
T Consensus 139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~-~~g~~~ 217 (435)
T KOG0067|consen 139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYL-IDGIDK 217 (435)
T ss_pred HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchh-hhhhhh
Confidence 36789999999999999999853211 112345789999999999999999999999999999999853 333445
Q ss_pred hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360 77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (240)
Q Consensus 77 ~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~ 156 (240)
.+|...+.++++++.++|.+++|+.+++.+.++++.-.+++|+.|+.++|++||.++|+++|.++|+.|++.+++
T Consensus 218 ~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa----- 292 (435)
T KOG0067|consen 218 SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA----- 292 (435)
T ss_pred hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-----
Confidence 677777778999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCC-CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccc
Q 026360 157 PQPA-PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYC 214 (240)
Q Consensus 157 ~EP~-~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 214 (240)
|. -...|+-+.||.++|||.++++..+...+.. .....+++-+.|.......+|
T Consensus 293 --~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re--~aa~eiR~ai~g~ip~~l~~c 347 (435)
T KOG0067|consen 293 --PRSFKQGPLKDAPNLICTPHTAWYSEAASVELRE--VAALEIRRAITGRIPDSLRNC 347 (435)
T ss_pred --CcccccccccCCCCCCCCcccchhhHHHHHHHHH--HHhhhhhhccCCCCchhHHHH
Confidence 22 2346788899999999999999998877777 666678888888766555544
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.77 E-value=3.6e-18 Score=157.75 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=102.4
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
..+.|++++|+|+|.||+.+|++++++|++|+++++++.....+...|+... +++++++.+|+|++|+. +.++++
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atG----t~~iI~ 324 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATG----NKDIIT 324 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCC----cccccC
Confidence 4689999999999999999999999999999999877654434445677654 89999999999999863 688999
Q ss_pred HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCC
Q 026360 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK 162 (240)
Q Consensus 112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~ 162 (240)
.+.|+.||+|+++||+||+ |++.+.++|+++. ++|+++.||...
T Consensus 325 ~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 325 LEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred HHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 9999999999999999999 7888889998754 688999998654
No 26
>PLN02494 adenosylhomocysteinase
Probab=99.71 E-value=4.5e-17 Score=150.28 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=106.2
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
..+.|++++|+|+|.||+.+|++++++|++|+++++++.....+...|+... +++++++.+|+|+.+.. ++++++
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI~ 324 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDIIM 324 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----CccchH
Confidence 3479999999999999999999999999999999987655455666677654 78999999999988543 678889
Q ss_pred HHHHccCCCCCEEEEcCC-CcccCHHHHHHH--HHhCCccEEEeeCCCCC
Q 026360 112 KDRIAKMKKGVLIVNNAR-GAIMDTQAVVDA--CSSGHIAGYSGDVWNPQ 158 (240)
Q Consensus 112 ~~~l~~mk~gailIN~sr-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~E 158 (240)
.+.|+.||+|++++|+|| +..||+++|.++ ++.+.+. +.+|+|..|
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 999999999999999999 689999999998 9999988 999999864
No 27
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.67 E-value=4.1e-16 Score=142.55 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=104.8
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
.+.|++|+|+|+|.||+.+|+.++++|++|+++++++.....+...|+... +++++++.+|+|+.++. +.++++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHHHH
Confidence 579999999999999999999999999999999887755555566677654 78899999999988765 5788888
Q ss_pred HHHccCCCCCEEEEcCCCcc-cCHHHHHHHHHhCCccEEEeeCCC
Q 026360 113 DRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWN 156 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~~-vd~~aL~~aL~~g~i~ga~lDV~~ 156 (240)
+.+..||+|++++|+||+.+ ||.++|.+++.+....+..+|+|.
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~ 311 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYI 311 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence 89999999999999999998 999999999988888888999876
No 28
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.64 E-value=4.2e-16 Score=126.20 Aligned_cols=115 Identities=15% Similarity=0.277 Sum_probs=95.1
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc-HHHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-KDRI 115 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~-~~~l 115 (240)
++|||||+|.||..+|++|...|++|.+||+++...+.+.+.|+..++++.|+++++|+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 689999999999999999999999999999987666667777888889999999999999999998888777663 2278
Q ss_pred ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (240)
Q Consensus 116 ~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD 153 (240)
+.+++|.++||++..++-+...+.+.+.+..+. .+|
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vd 117 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVD 117 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eee
Confidence 889999999999999999999999999988876 445
No 29
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.62 E-value=1.3e-15 Score=134.48 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=81.5
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
..|+||+|||||+|+||+++|++|+++|++|+++++...+.+.+...|+... ++++++++||+|++|+|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 3689999999999999999999999999999999875544455566687654 899999999999999997 67789999
Q ss_pred HHHHccCCCCCEEEEc
Q 026360 112 KDRIAKMKKGVLIVNN 127 (240)
Q Consensus 112 ~~~l~~mk~gailIN~ 127 (240)
.+.++.||+|++++-.
T Consensus 90 ~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 90 AEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 8999999999977653
No 30
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.62 E-value=2.3e-15 Score=131.54 Aligned_cols=123 Identities=14% Similarity=0.198 Sum_probs=109.1
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KD 113 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~ 113 (240)
++||+||+|.||..+|++|.+.|++|.+|||++.+ .+.....|.....+..|+.+++|+|++++|++++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 48999999999999999999999999999998766 5666677998888999999999999999999999988874 57
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 159 (240)
.++.+|||+++||+|+.+......+.+.++++.+...---|....+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 8999999999999999999999999999999999855555554444
No 31
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.53 E-value=4.5e-14 Score=124.47 Aligned_cols=123 Identities=19% Similarity=0.261 Sum_probs=101.8
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 114 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~ 114 (240)
++|||||+|.||..+|+.+...|++|++||+++...+.....|....++++++++++|+|++++|.+..++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999986555555666777677899999999999999998877777653 346
Q ss_pred HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (240)
Q Consensus 115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 159 (240)
+..+++|.++||+++..+...+++.+.+.+.++.+.-..|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 778899999999999999889999999988777644444554433
No 32
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.53 E-value=3.8e-14 Score=124.73 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=96.4
Q ss_pred eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc-c-HHHH
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-D-KDRI 115 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i-~-~~~l 115 (240)
+|||||+|.||..+|..|...|++|++||+++...+.+...|.....+.++++++||+|++|+|.++.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 5899999999999999999999999999998755556666677666788999999999999999887777665 2 3467
Q ss_pred ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150 (240)
Q Consensus 116 ~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga 150 (240)
..++++.++||+++..+.+.+++.+.+++..+...
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~ 115 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYL 115 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 78899999999999999999999999998776633
No 33
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.50 E-value=1.7e-13 Score=121.22 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=98.3
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCCChhhhhcccHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDiVvl~lp~~~~t~~~i~~~ 113 (240)
++|||||+|.||..+|+.|...|++|++||+++...+.+.+.|.....++++++++ +|+|++++|..+.++.+++ +
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence 37999999999999999999999999999998655555666787777789998876 6999999998777777774 6
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD 153 (240)
.+..+++|.++||+++....+..++.+.+.+..+. .+|
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 77789999999999999999999999999988876 456
No 34
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.49 E-value=1.7e-13 Score=121.19 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=98.4
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 114 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~ 114 (240)
++|||||+|.||..+|..|...|++|++||+++...+.+.+.|.....+..++++++|+|++|+|.....+.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 479999999999999999999999999999987666666666777677899999999999999998776666653 346
Q ss_pred HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150 (240)
Q Consensus 115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga 150 (240)
+..+++|.++||++++.+...+.+.+.+.+.++...
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 777899999999999999999999999999988743
No 35
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.47 E-value=2.3e-13 Score=109.36 Aligned_cols=102 Identities=22% Similarity=0.369 Sum_probs=76.1
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
..+.||++.|+|||.+|+.+|+.|+++|++|++++.+|...-.+...|++.. +++++++++|+++.++. .+.++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCC----CccccC
Confidence 4589999999999999999999999999999999998766666666788765 89999999999998876 357788
Q ss_pred HHHHccCCCCCEEEEcCCCcc-cCHHHH
Q 026360 112 KDRIAKMKKGVLIVNNARGAI-MDTQAV 138 (240)
Q Consensus 112 ~~~l~~mk~gailIN~srg~~-vd~~aL 138 (240)
.+.|.+||+|+++.|++.-.. +|-+.|
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L 121 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDAL 121 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHH
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccc
Confidence 999999999999999986543 454444
No 36
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.45 E-value=5.5e-13 Score=118.09 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=98.6
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCCChhhhhcccHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDiVvl~lp~~~~t~~~i~~~ 113 (240)
++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....+++++++. +|+|++++|..+.+..++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 47999999999999999999999999999998765555666788777789988876 699999999876777766 36
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 154 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV 154 (240)
....+++|.++||++++...+...+.+.+++.++.+ +|.
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~--~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHF--VDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEE--EeC
Confidence 777899999999999999999999999999988874 453
No 37
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.43 E-value=5.5e-13 Score=124.98 Aligned_cols=123 Identities=12% Similarity=0.080 Sum_probs=104.7
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc----Cce---ecCCHHhhcCc---CCEEEEcCCCChhh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK---FEEDLDTMLPK---CDIVVVNTPLTEKT 106 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~---~~~~l~ell~~---aDiVvl~lp~~~~t 106 (240)
.+||+||+|.||+.+|++|...|++|.+|||++.+.+.+.+. |.. ...+++|+++. +|+|++++|..+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 369999999999999999999999999999987555444332 433 45688888876 99999999999988
Q ss_pred hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 160 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 160 (240)
+.++ ...+..+++|.++||+|+...-+...+.+.+++..+.+...-|...++.
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~g 139 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEG 139 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHH
Confidence 8888 4688889999999999999999999999999999999777777766653
No 38
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.43 E-value=6e-13 Score=122.46 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=97.0
Q ss_pred hCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHH
Q 026360 8 RNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87 (240)
Q Consensus 8 R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ 87 (240)
|.+........++.|+.-.. .....+.|++++|+|+|.||+.+|+.++++|++|+++|+++.....+...|+... +++
T Consensus 185 K~~~dn~~gt~~s~~~ai~r-at~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~ 262 (425)
T PRK05476 185 KSKFDNRYGTGESLLDGIKR-ATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TME 262 (425)
T ss_pred CccccccHHHHhhhHHHHHH-hccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHH
Confidence 33333333455566642110 1133579999999999999999999999999999999987755555555676644 789
Q ss_pred hhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHH
Q 026360 88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVD 140 (240)
Q Consensus 88 ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~ 140 (240)
++++.+|+|+.++. +.++++.+.+..||+|++++|+|+... +|.++|.+
T Consensus 263 eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 263 EAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 99999999988864 467888899999999999999999876 77777754
No 39
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.42 E-value=6.9e-13 Score=116.81 Aligned_cols=96 Identities=21% Similarity=0.335 Sum_probs=79.4
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhh
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t~~ 108 (240)
+.++.|++++|+|+|.||+.+|+.|+++|++|++++|++.....+...|.... .+++++++++|+|++|+|. .
T Consensus 146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-----~ 220 (287)
T TIGR02853 146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-----L 220 (287)
T ss_pred CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-----H
Confidence 35789999999999999999999999999999999997644444444555432 3577889999999999994 3
Q ss_pred cccHHHHccCCCCCEEEEcCCCc
Q 026360 109 MFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN~srg~ 131 (240)
+++++.++.|++++++||++..+
T Consensus 221 ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 221 VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HhCHHHHhcCCCCeEEEEeCcCC
Confidence 67888999999999999999743
No 40
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.40 E-value=2.2e-12 Score=113.91 Aligned_cols=114 Identities=17% Similarity=0.101 Sum_probs=96.4
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH--HH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR 114 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~--~~ 114 (240)
++|||||+|.||..+|+.|...|++|.+||+++. .+.+...|.....+..++.+++|+|++++|..+..+.++.. ..
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 3799999999999999999999999999998763 44455567777778999999999999999988777776632 35
Q ss_pred HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (240)
Q Consensus 115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD 153 (240)
++.+++|.++||++....-+...+.+.+.+..+. .+|
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd 116 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD 116 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence 6778999999999999999999999999988776 444
No 41
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.37 E-value=2.5e-12 Score=114.79 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=78.5
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC-CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i 110 (240)
..|+|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+...|+... +.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 35899999999999999999999999999998887653 33444556677655 899999999999999996654 6666
Q ss_pred cHHHHccCCCCCEEEEcCCC
Q 026360 111 DKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 111 ~~~~l~~mk~gailIN~srg 130 (240)
+.+.+..|++|++| -.+.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 67788899999988 55555
No 42
>PLN02256 arogenate dehydrogenase
Probab=99.35 E-value=3.2e-11 Score=107.05 Aligned_cols=110 Identities=18% Similarity=0.291 Sum_probs=84.8
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhhccc
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDiVvl~lp~~~~t~~~i~ 111 (240)
+-++++|+|||+|.||+++|+.+++.|.+|++||++. ..+.+...|+....+.++++ .++|+|++|+|. ..+..++.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~-~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~ 110 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD-YSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLR 110 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc-HHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHH
Confidence 3467899999999999999999999999999999875 33445556776667888876 479999999994 34555554
Q ss_pred HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
+-....++++++++|++..+-...+++.+.+..
T Consensus 111 ~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 111 SLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 322556899999999999766666666666644
No 43
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.35 E-value=7.8e-12 Score=110.63 Aligned_cols=117 Identities=16% Similarity=0.188 Sum_probs=94.6
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhh---cCcCCEEEEcCCCChhhhhcccHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el---l~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|.....+++++ ++++|+|++++|.. .++.++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 47999999999999999999999999999998765555666666555566654 45689999999976 666666 46
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
....+++|.++||++.+...+...+.+.+++..+.....-|.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCC
Confidence 777889999999999999999999999999888774433333
No 44
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.34 E-value=4.3e-12 Score=110.22 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=103.3
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-- 111 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~-- 111 (240)
.+.++||+||+|.||..++..|.+.|++|++||++......+.+.|....+++.|+.+.||+|+.++|+....+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 458899999999999999999999999999999988777888888999889999999999999999999888887773
Q ss_pred HHHHccCCCCCEE-EEcCCCcccCHHHHHHHHHhCCccE
Q 026360 112 KDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAG 149 (240)
Q Consensus 112 ~~~l~~mk~gail-IN~srg~~vd~~aL~~aL~~g~i~g 149 (240)
...++.++++... |+.++-+.-....|.++++......
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~ 151 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRF 151 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeE
Confidence 3467777888777 9999999999999999999987773
No 45
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.33 E-value=9.7e-12 Score=114.22 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=89.9
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i 110 (240)
+..+.|++|+|+|+|.||..+|+.++++|++|+++|+++.....+...|+... ++++.+..+|+|+.++. +..++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i 271 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDII 271 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHH
Confidence 34579999999999999999999999999999999988777777888888655 67888999999998875 35677
Q ss_pred cHHHHccCCCCCEEEEcCCCcc-cCHHHHHH
Q 026360 111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD 140 (240)
Q Consensus 111 ~~~~l~~mk~gailIN~srg~~-vd~~aL~~ 140 (240)
+.+.+..||+|++++|+|++.+ +|..+|..
T Consensus 272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 8788999999999999999876 77777654
No 46
>PLN02858 fructose-bisphosphate aldolase
Probab=99.32 E-value=9.8e-12 Score=128.73 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=104.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc--cH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK 112 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i--~~ 112 (240)
+.++||+||+|.||..+|++|...|++|.+||+++...+.+.+.|+..++++.++.++||+|++|+|..+..+.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 4678999999999999999999999999999998766677777888888899999999999999999988888876 34
Q ss_pred HHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCC--ccEEEeeC
Q 026360 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH--IAGYSGDV 154 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~--i~ga~lDV 154 (240)
..++.+++|.++||+|+..+-....+.+.+++.+ +. .+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence 6788899999999999999999999999999877 55 4554
No 47
>PLN02712 arogenate dehydrogenase
Probab=99.31 E-value=8.6e-12 Score=121.13 Aligned_cols=114 Identities=14% Similarity=0.211 Sum_probs=90.0
Q ss_pred ccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhh
Q 026360 29 YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTR 107 (240)
Q Consensus 29 ~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDiVvl~lp~~~~t~ 107 (240)
..+.++.+++|||||+|.||+++|+.++++|++|++||++.. .+.+.+.|+....+++++++ ++|+|++|+|. ..+.
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~-~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~ 439 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY-SDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTE 439 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH-HHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHH
Confidence 346778999999999999999999999999999999998743 34455678776678888775 59999999993 5667
Q ss_pred hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
.++..-....+|+|++++|++.++-...+.+.+.+..
T Consensus 440 ~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 440 KVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 7666544446899999999999985555556555544
No 48
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.31 E-value=8.2e-12 Score=116.73 Aligned_cols=122 Identities=14% Similarity=0.176 Sum_probs=101.8
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc----C--ceecCCHHhhcC---cCCEEEEcCCCChhhh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR 107 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~----g--~~~~~~l~ell~---~aDiVvl~lp~~~~t~ 107 (240)
.+|||||+|.||..+|+.|...|++|.+||+++...+.+.+. | +....+++++++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999987554444332 4 335678999886 5899999999888888
Q ss_pred hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 159 (240)
.++ .+.+..+++|.++||++.+..-|...+.+.+.+..+.+...-|...++
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 887 467888999999999999999999999999999999866666665543
No 49
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.30 E-value=7.9e-12 Score=109.99 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=94.0
Q ss_pred EEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHHHccC
Q 026360 41 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRIAKM 118 (240)
Q Consensus 41 IIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~l~~m 118 (240)
|||+|.||..+|+.|...|++|++||+++...+...+.|+....++.++++++|+|++|+|..+..+.++. ......+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999987666666667777677899999999999999997777666662 4566788
Q ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (240)
Q Consensus 119 k~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD 153 (240)
++|.++||++..++-....+.+.+++..+. .+|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 999999999988888888999999887776 455
No 50
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.28 E-value=6.1e-12 Score=110.15 Aligned_cols=166 Identities=17% Similarity=0.180 Sum_probs=126.7
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-ChhHHHhcCceec-C---C---HHhhcCcCCEEEEcCCCChhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFE-E---D---LDTMLPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~-~---~---l~ell~~aDiVvl~lp~~~~t 106 (240)
.|+.+||+|+|.+|+.-.+.++++|++|+++|++.. +.+..+.+|++.+ . + .+++...-|.++-++++- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 799999999999999999999999999999998763 4445556887522 1 1 235666678777776632 2
Q ss_pred hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~ 186 (240)
.+-+ ...++.||++..+|-++ .+..|...+-+.+-+..+.+....-|...|.+
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg--------------------------~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~ 311 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVG--------------------------LPEKPLKLDTFPLILGRKSIKGSIVGSRKETQ 311 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEe--------------------------CcCCcccccchhhhcccEEEEeeccccHHHHH
Confidence 3333 35778899999998886 23335555545556677878877778899999
Q ss_pred HHhhhhHHHHHHHHHHHccCCCCCCccchhhhcc---cceeEeeeCCc
Q 026360 187 VIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLR---ESRICLTDTSR 231 (240)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~---~~r~~~~~~~~ 231 (240)
+.+.. ....+|..+++--+++.||.++++|.. +|||++.-.++
T Consensus 312 E~Ldf--~a~~~ik~~IE~v~~~~v~~a~erm~kgdV~yRfVvD~s~~ 357 (360)
T KOG0023|consen 312 EALDF--VARGLIKSPIELVKLSEVNEAYERMEKGDVRYRFVVDVSKS 357 (360)
T ss_pred HHHHH--HHcCCCcCceEEEehhHHHHHHHHHHhcCeeEEEEEEcccc
Confidence 99888 888999999999999999999999976 89997765554
No 51
>PLN02858 fructose-bisphosphate aldolase
Probab=99.26 E-value=2.8e-11 Score=125.33 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=101.0
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc--cHH
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DKD 113 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i--~~~ 113 (240)
.++|||||+|.||..+|++|...|++|.+||+++...+.+...|.....+..+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 489999999999999999999999999999998755555566677667799999999999999999888888876 345
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHHHHh--CCccEEEeeC
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGDV 154 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~--g~i~ga~lDV 154 (240)
.++.+++|.++||+++..+-..+.+.+.+.+ ..+...-..|
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPV 446 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPV 446 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 7888999999999999999999999999988 6665333333
No 52
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.26 E-value=2.8e-11 Score=107.10 Aligned_cols=94 Identities=26% Similarity=0.321 Sum_probs=79.7
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
..+.|++++|+|+|.+|+.+++.|+.+|++|+++|+++.....+...|+... .++.+.++++|+|+.++|. .+
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~ 222 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LV 222 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hh
Confidence 4678999999999999999999999999999999998655555666776543 3667889999999999982 46
Q ss_pred ccHHHHccCCCCCEEEEcCCC
Q 026360 110 FDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg 130 (240)
++++.++.|++++++||++..
T Consensus 223 i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 223 LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred hhHHHHHcCCCCcEEEEEccC
Confidence 788899999999999999853
No 53
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.24 E-value=3.3e-11 Score=112.67 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=97.7
Q ss_pred eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-----CceecCCHHhhc---CcCCEEEEcCCCChhhhhc
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~ell---~~aDiVvl~lp~~~~t~~~ 109 (240)
.|||||+|.||..+|+.|...|++|.+||+++...+.+.+. ++....+++++. +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999987555544433 244556777766 4689999999987777777
Q ss_pred ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC
Q 026360 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 158 (240)
+ .+.+..+++|.++||++....-+.....+.+.+..+.+...-|...+
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 7 46778899999999999999999999999999988886655555544
No 54
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.21 E-value=3.1e-11 Score=96.76 Aligned_cols=94 Identities=22% Similarity=0.339 Sum_probs=69.0
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
|+||+|+|||||..|++.|..|+..|.+|++-.+... +.+.+++.|++.. +.+|+.++||+|++.+|+. ....++.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~-~q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDE-VQPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence 6899999999999999999999999999998887654 5666777888765 8999999999999999933 33455567
Q ss_pred HHHccCCCCCEEEEcCCC
Q 026360 113 DRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg 130 (240)
+....||+|.+++ .+.|
T Consensus 80 ~I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 80 EIAPNLKPGATLV-FAHG 96 (165)
T ss_dssp HHHHHS-TT-EEE-ESSS
T ss_pred HHHhhCCCCCEEE-eCCc
Confidence 8888999999775 3444
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.20 E-value=3.7e-10 Score=105.04 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=96.8
Q ss_pred CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCCh-hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (240)
Q Consensus 37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~ 114 (240)
++|+||| +|.||.++|+.|+..|++|.++++++... +.+...|+....+.++.++++|+|++++|. ..+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 4799997 89999999999999999999999875432 344556776666888899999999999995 3344444 456
Q ss_pred HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC-CCCCCCCCCCeEEcCCC
Q 026360 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHV 178 (240)
Q Consensus 115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~~l~~~~nv~~TPH~ 178 (240)
...+++++++++++..+....+++.+.+..+ .. .+.. -|.. +..+++.-..++++|+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence 6778999999999986655556666665432 22 2222 2321 22356666788999965
No 56
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.19 E-value=2.6e-10 Score=101.17 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=91.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCc--eecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~ell~~aDiVvl~lp~~~~t~~~i 110 (240)
..++|+|||+|.||.++|..++..|. +|++||+++...+.+...|. ....+.++.++++|+|++|+|.. ....+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v- 82 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAV- 82 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHH-
Confidence 34789999999999999999998885 89999997655555555564 23457788899999999999953 22333
Q ss_pred cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCC---C---CCCCCCCCCCCCCeEEcCCCCC
Q 026360 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP---Q---PAPKDHPWRYMPNQAMTPHVSG 180 (240)
Q Consensus 111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~---E---P~~~~~~l~~~~nv~~TPH~a~ 180 (240)
..+....++++.++++++....-..+++.+.+.. .+. .++.++. | |.....+++.-..+++||+-++
T Consensus 83 ~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 83 AAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 3455567899999999976543222333333322 222 3332221 1 1112235566667889997544
No 57
>PLN02712 arogenate dehydrogenase
Probab=99.17 E-value=4.1e-10 Score=109.53 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=81.6
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhhcccH
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
-+.++|||||+|.||+.+|+.|+..|++|++||++. ....+.+.|+....++++++ +++|+|++|+|. ..+..++..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~-~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD-HSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 345799999999999999999999999999999863 34456667877777888866 569999999994 456666654
Q ss_pred HHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
-.+..++++++|+|+++-+..--+++.+.+..
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 33456899999999985553223344444433
No 58
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.16 E-value=4.6e-11 Score=109.73 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=81.2
Q ss_pred CCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC------CCChhHHHhcCceecCCHHhhcCcCC
Q 026360 21 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV------KMDPQLEKETGAKFEEDLDTMLPKCD 94 (240)
Q Consensus 21 ~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~------~~~~~~~~~~g~~~~~~l~ell~~aD 94 (240)
-|.+.........|+||+|+|||+|++|+..|..|+..|.+|++--|. ..+.+.+.+.|+.. .+++|++++||
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~AD 99 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQAD 99 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCC
Confidence 466555433345799999999999999999999999999998843332 33444455567754 58999999999
Q ss_pred EEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360 95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 95 iVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg 130 (240)
+|++.+|++ . .+.+..+.+..||+|++|. .|.|
T Consensus 100 vVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHG 132 (487)
T PRK05225 100 LVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHG 132 (487)
T ss_pred EEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCC
Confidence 999999988 3 6666789999999999764 4444
No 59
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.15 E-value=2.6e-10 Score=99.95 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=87.3
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l 115 (240)
++|+|||+|.||.++|..|+..|++|++||+++...+.+...|.. ...+..+.++++|+|++|+|... ...+ .++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~-~~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPP-SEQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHH-HHHHH
Confidence 479999999999999999999999999999876555555555542 22222356789999999999432 2333 34666
Q ss_pred ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee-CCCCCCCC---CCCCCCCCCCeEEcCCCCC
Q 026360 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP---KDHPWRYMPNQAMTPHVSG 180 (240)
Q Consensus 116 ~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP~~---~~~~l~~~~nv~~TPH~a~ 180 (240)
..+++++++++++.-+.- ..+++........+.- ++..|... ....++.-..+++||+-.+
T Consensus 79 ~~l~~~~ii~d~~Svk~~----~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~ 143 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAP----IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT 143 (279)
T ss_pred HhCCCCcEEEeCcchHHH----HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence 778999999999875432 2333332221212211 11111110 1122566677899997653
No 60
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.15 E-value=1.8e-10 Score=102.64 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=72.9
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC-CCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV-KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~-~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
|+|++|||||+|+||+++|+.|+.+|++|+++++. ....+.+.+.|+... +.++++++||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 57999999999999999999999999998766543 333344446677654 688899999999999994423 334455
Q ss_pred HHHccCCCCCEEEEcCCCc
Q 026360 113 DRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~ 131 (240)
+....++++. +|.++.|-
T Consensus 79 ei~~~l~~g~-iVs~aaG~ 96 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGF 96 (314)
T ss_pred HHHhhCCCCc-EEEEeCCc
Confidence 6777788886 78888774
No 61
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.12 E-value=8.5e-11 Score=86.37 Aligned_cols=90 Identities=20% Similarity=0.321 Sum_probs=66.5
Q ss_pred eEEEEccChHHHHHHHHhccCC---CEEEEE-cCCCCChhH-HHhcCceecC-CHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFN---CNLLYH-DRVKMDPQL-EKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G---~~V~~~-d~~~~~~~~-~~~~g~~~~~-~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
||||||+|+||.++++.+...| .+|+.+ ++++..... ....++.... +..++++++|+|++++| |....-+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence 6999999999999999999999 899844 887644433 3556665554 78999999999999998 33323333
Q ss_pred HHHHccCCCCCEEEEcCCC
Q 026360 112 KDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 112 ~~~l~~mk~gailIN~srg 130 (240)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 344 567789999998754
No 62
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.08 E-value=6.8e-10 Score=96.33 Aligned_cols=104 Identities=13% Similarity=0.244 Sum_probs=80.9
Q ss_pred CeEEEEccChHHHHHHHHhccCCC----EEEEE-cCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYH-DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
++|||||+|+||.++++.|...|+ +|+++ ++++...+.+.+.|+....+..++++++|+|++|+| .+....++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 579999999999999999998887 88888 887655555556788777788899999999999997 44555555
Q ss_pred HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
.+....++++.++|++..| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 3455667889999988765 466677666543
No 63
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.08 E-value=1.3e-09 Score=95.28 Aligned_cols=100 Identities=16% Similarity=0.290 Sum_probs=72.2
Q ss_pred CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~-~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
++|+|||+|.||.++|..|+..|. +|++||+++...+.+.+.|+. ...+.+++. ++|+|++|+|... ...++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence 479999999999999999998885 799999876555555556653 344677765 5999999999433 33333 35
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
... +++++++++++.- ...+.+.+.+
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 556 8899999997652 3445555544
No 64
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.08 E-value=2.4e-09 Score=93.87 Aligned_cols=136 Identities=21% Similarity=0.190 Sum_probs=92.0
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC--CChhHHHhcCceec--CCH-HhhcCcCCEEEEcCCCChhhhhcc
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--MDPQLEKETGAKFE--EDL-DTMLPKCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~--~~~~~~~~~g~~~~--~~l-~ell~~aDiVvl~lp~~~~t~~~i 110 (240)
-++|+|+|+|.||+++|+.++..|+.|.+++++. .....+.++|+... .+. .+...++|+|++++|- ..+..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 4689999999999999999999999875555443 33344445665321 233 6778889999999994 3344444
Q ss_pred cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC---CCCCCCCCCCeEEcCCCC
Q 026360 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---KDHPWRYMPNQAMTPHVS 179 (240)
Q Consensus 111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~~l~~~~nv~~TPH~a 179 (240)
++....+|+|+++++++.-+----+++.+.+.+.. ... ..-|.. ...+++....+++||.-.
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~v-----g~HPM~G~~~~~~lf~~~~~vltp~~~ 146 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFV-----GGHPMFGPEADAGLFENAVVVLTPSEG 146 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeE-----ecCCCCCCcccccccCCCEEEEcCCCC
Confidence 34555799999999999876555555555554332 222 222432 245677777899999653
No 65
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.06 E-value=2.6e-09 Score=94.28 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=78.1
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-----------HHhc------------C-ceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKET------------G-AKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-----------~~~~------------g-~~~~~~l~ell~~ 92 (240)
++|||||+|.||..+|..+...|++|++||+++...+. ..+. + ....++. +.+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 68999999999999999999999999999987643321 1111 1 1233344 56899
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEEE-EcCCCcccCHHHHHHHHHh
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI-N~srg~~vd~~aL~~aL~~ 144 (240)
||+|+.|+|..++.+..+..+..+.++++++|+ |+|.- ....+.+.+..
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~ 133 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR 133 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence 999999999999988888777777899999887 66655 44556666643
No 66
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=99.05 E-value=8.8e-10 Score=97.94 Aligned_cols=103 Identities=20% Similarity=0.347 Sum_probs=89.1
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
-+.||++.|.|||.+|+.+|.++++.|++|++...+|...-.+...|++.. +++++...+|+++.++. ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCccCH
Confidence 479999999999999999999999999999999987766666666788765 89999999999999986 5789999
Q ss_pred HHHccCCCCCEEEEcCCCcc-cCHHHHHH
Q 026360 113 DRIAKMKKGVLIVNNARGAI-MDTQAVVD 140 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~~-vd~~aL~~ 140 (240)
+.+..||+|+++.|.|.=.+ +|.+.|.+
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHH
Confidence 99999999999999997555 55555543
No 67
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.05 E-value=7.3e-09 Score=91.13 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=93.7
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-------------------------cCceecCCHHhhcC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------------TGAKFEEDLDTMLP 91 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~l~ell~ 91 (240)
++|+|||.|.||..+|..+...|++|++||+++...+...+ ..+...+++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 58999999999999999999999999999987543222110 12334568888899
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCC
Q 026360 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 171 (240)
Q Consensus 92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~n 171 (240)
.||+|+.++|...+.+..+-++..+.++++++|+..+.+ +....+.+.+... -+..++.- .+|.+..+.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf--------~~p~~~~~l 152 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHF--------ANEIWKNNT 152 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcC--------CCCCCcCCe
Confidence 999999999966555555555666778889988543333 3455666666432 23344431 223446677
Q ss_pred eEEcCCCCCCcHHHHH
Q 026360 172 QAMTPHVSGTTIDAQV 187 (240)
Q Consensus 172 v~~TPH~a~~t~~~~~ 187 (240)
+.+.|+-. .+.++.+
T Consensus 153 vevv~~~~-t~~~~~~ 167 (287)
T PRK08293 153 AEIMGHPG-TDPEVFD 167 (287)
T ss_pred EEEeCCCC-CCHHHHH
Confidence 88888654 3444443
No 68
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.03 E-value=3.8e-09 Score=94.39 Aligned_cols=114 Identities=13% Similarity=0.161 Sum_probs=85.9
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------c---------CceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------T---------GAKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~l~ell~~aDiV 96 (240)
++|||||.|.||..+|..+...|++|.+||+++...+.... . .+....++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999997543221110 1 124556888999999999
Q ss_pred EEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360 97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153 (240)
Q Consensus 97 vl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD 153 (240)
+-++|.+.+.+..+..+.-+.++++++| .+++. -+...++.+.++. .-+..++-
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~-p~R~~g~H 141 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH-PERCVVGH 141 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC-cccEEEEe
Confidence 9999999988888888888889999844 44444 4577777777743 23334444
No 69
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.03 E-value=2e-09 Score=97.73 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=88.7
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--Cce--ecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~--~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
++|+|||+|.||.++|+.|+..|++|.+|++++......... ++. ...++++++++||+|++|+|. ..+..++ .
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-~ 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-A 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH-H
Confidence 479999999999999999999999988888766444333332 321 234678889999999999995 3445554 3
Q ss_pred HHHc-cCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC---------CCCCCCCCCCeEEcCCCC
Q 026360 113 DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---------KDHPWRYMPNQAMTPHVS 179 (240)
Q Consensus 113 ~~l~-~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~---------~~~~l~~~~nv~~TPH~a 179 (240)
+... .+++++++++++.-+.-..+++.+.+. .... .++.+ |.+ ....++.-...++||+-.
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~ 149 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH 149 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC
Confidence 4444 478999999998776543444433322 2222 23322 322 123456666688999754
No 70
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.02 E-value=3.6e-09 Score=88.57 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=85.0
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceecCCHHhhcC-cCCEEEEcCCCChhhhhc
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~-~aDiVvl~lp~~~~t~~~ 109 (240)
.+++||+++|+|+|+||+.+|+.|..+|++|+++|+++....... ..+...+ +.++++. ++|+++.|.. .++
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----ccc
Confidence 368999999999999999999999999999999998754333332 3366655 4456664 7999987765 468
Q ss_pred ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
++.+.++.|+. .+++.-+.+.+-| ..-.+.|++..+.
T Consensus 98 I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred cCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 88899999974 5788888877766 6677788888776
No 71
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.02 E-value=8.8e-10 Score=96.43 Aligned_cols=104 Identities=15% Similarity=0.308 Sum_probs=80.1
Q ss_pred CCeEEEEccChHHHHHHHHhccCCC----EEEEEcCCCCChhHHH-hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~----~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i 110 (240)
.++|||||+|+||.++++.|...|+ +|+++|+++...+.+. ..|+....+.++++++||+|++++|. .....++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence 3589999999999999999987774 6999998765544443 36776667888899999999999993 4445544
Q ss_pred cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (240)
Q Consensus 111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~ 143 (240)
.+....++++.++|++.-| ++.+.|.+.+.
T Consensus 81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 3455557888999999987 56677777664
No 72
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.02 E-value=2.9e-09 Score=98.71 Aligned_cols=136 Identities=10% Similarity=0.106 Sum_probs=92.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce----------------ecCCHHhhcCcCCEEEE
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----------------FEEDLDTMLPKCDIVVV 98 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~----------------~~~~l~ell~~aDiVvl 98 (240)
..++|||||+|.||..+|..+.. |++|++||+++...+... .|.. ..++..+.+++||++++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 34789999999999999999877 799999999875544443 2221 22233456899999999
Q ss_pred cCCCC------hhhhhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC--CccEEEee----CCCCCCCCCCC
Q 026360 99 NTPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGD----VWNPQPAPKDH 164 (240)
Q Consensus 99 ~lp~~------~~t~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g--~i~ga~lD----V~~~EP~~~~~ 164 (240)
|+|.. ++...+. .....+.+++|.++|+.|+-.+-..+.+++.+.+. ++. ..| +|.+||.....
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~--~~~~~~~~~~PE~v~~G~ 160 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT--FNQDFYVGYSPERINPGD 160 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC--cCCCeeEeeCCCcCCCCc
Confidence 99954 2334443 34567789999999999999998888765544332 222 122 35668776543
Q ss_pred ---CCCCCCCeEE
Q 026360 165 ---PWRYMPNQAM 174 (240)
Q Consensus 165 ---~l~~~~nv~~ 174 (240)
.+...|.++.
T Consensus 161 a~~~~~~~~riv~ 173 (425)
T PRK15182 161 KKHRLTNIKKITS 173 (425)
T ss_pred ccccccCCCeEEE
Confidence 3445555543
No 73
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.8e-09 Score=91.32 Aligned_cols=118 Identities=21% Similarity=0.260 Sum_probs=102.2
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc---CcCCEEEEcCCCChhhhhcccHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---PKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell---~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
+++|.||+|+||..+++++...|++|++||+++...+.+...|+....++++++ ....+|.+.+|....|..+++ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 579999999999999999999999999999988777777777887777888765 456799999998877777764 6
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCC
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 157 (240)
.-..|.+|-++|+-+...--|.....+.|.+..|. .+||=..
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS 121 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS 121 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence 77789999999999999999999999999999998 7887543
No 74
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.01 E-value=8.9e-10 Score=96.93 Aligned_cols=115 Identities=11% Similarity=0.098 Sum_probs=83.2
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-------c-----------------CceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-----------------GAKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~l~ell~~ 92 (240)
++|+|||.|.||..+|..+...|++|++||+++...+...+ . .+....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999987544332211 0 12345678889999
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEE-EEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gail-IN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
||+|+.|+|...+.+..+..+..+.+++++++ +|+|..++ ..+.+.++. .-...++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 99999999987776666655666778999877 78877544 456665532 2333455544
No 75
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.01 E-value=1.5e-09 Score=96.44 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=67.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~ 114 (240)
.+++|+|||+|.||+.+|+.|...|++|.+|+|+.. .+++++++++|+|++++|. +....++. +.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l 67 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAE-QV 67 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HH
Confidence 467999999999999999999999999999998642 3678889999999999996 46666653 33
Q ss_pred Hc-cCCCCCEEEEcCCCc
Q 026360 115 IA-KMKKGVLIVNNARGA 131 (240)
Q Consensus 115 l~-~mk~gailIN~srg~ 131 (240)
.. .+++++++|++++|-
T Consensus 68 ~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 68 QALNLPPETIIVTATKGL 85 (308)
T ss_pred HHhcCCCCcEEEEeCCcc
Confidence 23 478899999998853
No 76
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=99.00 E-value=1.1e-09 Score=95.53 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=83.3
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
-+.||.+.|.|||.+|+.+|+.|++||..|++...+|...-.+...|++.. +++|++++.|+++.++. ++.+|..
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTG----c~dii~~ 285 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTG----CKDIITG 285 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccC----CcchhhH
Confidence 368999999999999999999999999999999887766666666788765 99999999999998875 6788999
Q ss_pred HHHccCCCCCEEEEcCCCc
Q 026360 113 DRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~ 131 (240)
+.|.+||+++++.|++.-.
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred HHHHhCcCCcEEecccccc
Confidence 9999999999999998654
No 77
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.99 E-value=1.1e-08 Score=90.17 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=76.3
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~ 92 (240)
++|+|||.|.||..+|..+...|++|++||+++...+...+ .| +...++++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999987543322110 12 23445665 4789
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEEE-EcCCCcccCHHHHHHHHH
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACS 143 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI-N~srg~~vd~~aL~~aL~ 143 (240)
||+|+.++|..++.+..+-.+..+.++++++|+ |+|.-. ..++.+.+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~ 132 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATD 132 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC
Confidence 999999999777766665567777889999998 665543 346777664
No 78
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.99 E-value=2.5e-09 Score=98.83 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=78.0
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce--ecCCHHhh---------------cCcCCEEEEc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FEEDLDTM---------------LPKCDIVVVN 99 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--~~~~l~el---------------l~~aDiVvl~ 99 (240)
++|+|||+|.||..+|..|...|++|++||+++...+... .|.. ....++++ +++||+|++|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~-~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN-RGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH-CCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 6899999999999999999999999999998765444322 1211 01123322 3479999999
Q ss_pred CCCC------hhhhhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360 100 TPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (240)
Q Consensus 100 lp~~------~~t~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g 145 (240)
+|.. ++...+. .......+++|+++|+.|.-.+-..+.+...+.+.
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9953 1112221 24567778999999999998888888888877664
No 79
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.98 E-value=5.1e-09 Score=96.63 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=78.2
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDiV 96 (240)
++|||||+|.||..+|..|...|++|++||+++...+.... .| +....+++++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 47999999999999999999999999999987543322211 23 44556788889999999
Q ss_pred EEcCCCChh------hhhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHH
Q 026360 97 VVNTPLTEK------TRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 142 (240)
Q Consensus 97 vl~lp~~~~------t~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL 142 (240)
++|+|.... ...+. .....+.+++|.++|+.|.-.+=..+.+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 999995432 11121 23456678999999999987777777776444
No 80
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.98 E-value=1.1e-08 Score=93.05 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=82.0
Q ss_pred cCCCeEEEEcc-ChHHHHHHHHhcc-CCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 34 LEGKTVGTVGC-GRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 34 l~g~~vgIIG~-G~iG~~~A~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
+.-.+|+|||+ |.||+++|+.|+. +|.+|+++|+.. ....++++.+++||+|++|+|.. .+..++.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d-----------~~~~~~~~~v~~aDlVilavPv~-~~~~~l~ 69 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD-----------PGSLDPATLLQRADVLIFSAPIR-HTAALIE 69 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc-----------cccCCHHHHhcCCCEEEEeCCHH-HHHHHHH
Confidence 35679999999 9999999999996 589999999841 01236788899999999999943 3333332
Q ss_pred HHHH---ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC--CCCCCCCCCCeEEcCC
Q 026360 112 KDRI---AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP--KDHPWRYMPNQAMTPH 177 (240)
Q Consensus 112 ~~~l---~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~~l~~~~nv~~TPH 177 (240)
+.. ..++++++++|++.-+- .+.+++...... +...-|.. ..+.+++-.++++||.
T Consensus 70 -~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~~-----fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 70 -EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQAE-----VVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred -HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCCC-----EEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 332 23799999999997552 222222222222 22223432 2345677777899986
No 81
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.97 E-value=6.9e-09 Score=94.57 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=74.3
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCce---e---cCCHHhhcCcCCEEEEcCCCC-h
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAK---F---EEDLDTMLPKCDIVVVNTPLT-E 104 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~---~---~~~l~ell~~aDiVvl~lp~~-~ 104 (240)
.+.+.++.|+|.|.+|+.+++.++.+|++|.++|+++...+... ..+.. . ..++.+.+.++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 36778999999999999999999999999999998754333332 23321 1 124667889999999998542 2
Q ss_pred hhhhcccHHHHccCCCCCEEEEcC
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.+..+++++.++.||+++++||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 345678999999999999999997
No 82
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.95 E-value=4.2e-09 Score=94.26 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=78.2
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------C------ceecCCHHhhcCcCCEEEEcCC
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------G------AKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------g------~~~~~~l~ell~~aDiVvl~lp 101 (240)
.++|+|||.|.||..+|..|...|++|.+|+|++...+..... | +...+++++.++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4689999999999999999999999999999975433333322 2 3345688888899999999999
Q ss_pred CChhhhhcccHHHHccCCCCCEEEEcCCC-cccC--HHHHHHHHHh
Q 026360 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARG-AIMD--TQAVVDACSS 144 (240)
Q Consensus 102 ~~~~t~~~i~~~~l~~mk~gailIN~srg-~~vd--~~aL~~aL~~ 144 (240)
.. .+ ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 54 22 4566778999999999997 4333 5566666655
No 83
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.94 E-value=9.6e-09 Score=81.65 Aligned_cols=111 Identities=16% Similarity=0.269 Sum_probs=80.5
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhH-HHhcCc----eecCCHHhhcCcCCEEEEcCCCChh-
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EKETGA----KFEEDLDTMLPKCDIVVVNTPLTEK- 105 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~-~~~~g~----~~~~~l~ell~~aDiVvl~lp~~~~- 105 (240)
++.+++++|+|.|.+|+.+++.+...| .+|.++|+++...+. .+..+. ....+.+++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 356899999999999999999999885 789999987544333 233332 1345777888999999999996543
Q ss_pred hhh-cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 106 t~~-~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
... .+.. ..++++.+++|++..+... .+.+++++.++.
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~ 134 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK 134 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence 112 2232 2368999999998775444 888888876554
No 84
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.94 E-value=2e-09 Score=96.25 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=119.3
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-C-----CHHhhcCcCCEEEEcCCCChhhhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-E-----DLDTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~-----~l~ell~~aDiVvl~lp~~~~t~~ 108 (240)
.|++|+|+|+|.+|....+.++++|++|+++|+++.+.+.++++|...+ . ..+++-+.+|+++.++| ...
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~--- 241 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT--- 241 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh---
Confidence 4999999999999999999999999999999999888888899887532 1 12333334999999998 322
Q ss_pred cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC-CCCCCCCCCCeEEcCCCCCCcHHHHH
Q 026360 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHVSGTTIDAQV 187 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~~l~~~~nv~~TPH~a~~t~~~~~ 187 (240)
+ ...++.++++..++-+|-. ..+|.+ ......-+.++-+..+..|.-.|.++
T Consensus 242 -~-~~~l~~l~~~G~~v~vG~~-------------------------~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e 294 (339)
T COG1064 242 -L-EPSLKALRRGGTLVLVGLP-------------------------GGGPIPLLPAFLLILKEISIVGSLVGTRADLEE 294 (339)
T ss_pred -H-HHHHHHHhcCCEEEEECCC-------------------------CCcccCCCCHHHhhhcCeEEEEEecCCHHHHHH
Confidence 2 3567789999999888611 112222 11223445677777777788888887
Q ss_pred HhhhhHHHHHHHHHHH-ccCCCCCCccchhhhcc---cceeEeee
Q 026360 188 IVHFFPVFMRLFTSFL-SHKSNSELKYCSYAMLR---ESRICLTD 228 (240)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~---~~r~~~~~ 228 (240)
.+.. .....|+... +--+++++|.+..+|.+ +||+++.-
T Consensus 295 ~l~f--~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~ 337 (339)
T COG1064 295 ALDF--AAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDM 337 (339)
T ss_pred HHHH--HHhCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEEecC
Confidence 7776 7777888888 57788889988888865 79998764
No 85
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.93 E-value=5.2e-09 Score=91.71 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=77.7
Q ss_pred CCCeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCC-ChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM-DPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~-~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~ 108 (240)
..++|||||+|+||.++++.|...| .+|++++|++. ..+. ....|+....+..++++++|+|++++|.. ....
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence 4579999999999999999998877 68999998652 2222 23457766678888999999999999933 3333
Q ss_pred cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
++ .+....++++.++|++.-| ++.+.+.+.+..
T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 33 3455567889999998655 356666666543
No 86
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.92 E-value=1.3e-08 Score=100.30 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=95.1
Q ss_pred CCeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
-++|+|||+|.||.++++.++..| .+|++||+++...+.+.+.|+. ...+++++++++|+|++++|.. ....++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl- 80 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL- 80 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 368999999999999999999888 4799999987655556666653 3456788899999999999943 333333
Q ss_pred HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC---------CCCCCCCCCCCeEEcCCCCC
Q 026360 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA---------PKDHPWRYMPNQAMTPHVSG 180 (240)
Q Consensus 112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---------~~~~~l~~~~nv~~TPH~a~ 180 (240)
.+....++++.++++++..+....+.+.+.+....++ +..+-|. ..+..++.-.+++++|+..+
T Consensus 81 ~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 81 ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 3444567889999999976544455565555432222 2223332 12335677778899997644
No 87
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.92 E-value=1.8e-08 Score=92.05 Aligned_cols=91 Identities=18% Similarity=0.278 Sum_probs=69.9
Q ss_pred CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
..++|+||| +|.||+++|+.|+..|++|.+||++.. .+.++++++||+|++|+|... +..++ .+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~-~~ 161 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVI-AR 161 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HH
Confidence 468999999 999999999999999999999998421 256778889999999999553 34444 34
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHH
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDA 141 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~a 141 (240)
... +++|+++++++.-+..-..++.+.
T Consensus 162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 162 LPP-LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred HhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence 444 899999999987654334444443
No 88
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.89 E-value=4.3e-08 Score=87.13 Aligned_cols=106 Identities=11% Similarity=0.126 Sum_probs=73.7
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~ 92 (240)
++|+|||.|.||.++|..+...|++|++||+++...+.. .+.| +....++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999975332221 1223 2455688889999
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
+|+|+.++|...+.+..+..+.-+..+++.++ ..+.. ......+.+.+..
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii-~ssts-~~~~~~la~~~~~ 132 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAIL-ASSTS-ALLASAFTEHLAG 132 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceE-EEeCC-CCCHHHHHHhcCC
Confidence 99999999976555544443433334455544 33333 3456678887754
No 89
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.88 E-value=1.1e-08 Score=90.32 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=74.9
Q ss_pred HHHHHHHhccCCCEEEEEcCCCCCh-----hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCC
Q 026360 48 GKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (240)
Q Consensus 48 G~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~ga 122 (240)
|..+|++|...|++|++||+++... +.+.+.|+...++..++++++|+|++++|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 7899999999999999999865322 23566788888889999999999999999888887776 46888999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHh
Q 026360 123 LIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 123 ilIN~srg~~vd~~aL~~aL~~ 144 (240)
++||+|+.+ .+.++..|+.
T Consensus 111 IVID~STIs---P~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTVS---PVVLYYSLEK 129 (341)
T ss_pred EEEECCCCC---HHHHHHHHHH
Confidence 999998655 4445444444
No 90
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.88 E-value=2e-08 Score=88.43 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=81.8
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~ 92 (240)
++|||||.|.||..+|..+...|++|++||+++...+. ..+.| +...+++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999998654332 12222 1245677 45799
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccC-CCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~m-k~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~ 156 (240)
||+|+-++|.+.+.+..+..+.-+.+ ++++++++.+.+-.+ .++..+++. .-+..++.-|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~ 146 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFN 146 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCC
Confidence 99999999999888888776555555 889999887766444 444444432 22234555443
No 91
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.86 E-value=8.9e-09 Score=90.80 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=67.5
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||+|+|||.| .||+.+|..|...|+.|++|++.. .++.++.++||+|+++++.. +.
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~~ 215 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----RL 215 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----hc
Confidence 457999999999996 999999999999999999998643 16888999999999999843 34
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+.... +|+|+++||+|-..
T Consensus 216 v~~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW---LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh---ccCCcEEEEecccc
Confidence 55443 79999999999554
No 92
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.86 E-value=7.9e-08 Score=84.29 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=77.2
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-----------HHHhcC-------------ceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----------LEKETG-------------AKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-----------~~~~~g-------------~~~~~~l~ell~~ 92 (240)
++|+|||.|.||..+|..+...|++|+++|+++...+ ...+.| +...++.++ +++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 5799999999999999999999999999998754332 111222 233446654 789
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
||+|+.++|.....+.-+..+..+.++++++++....| +....+.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999977666655656677778999988554444 566688888743
No 93
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.86 E-value=8.3e-09 Score=91.72 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=72.0
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEcCCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDiVvl~lp~ 102 (240)
++|+|||+|.||..+|..|...|++|.+|++++...+..... +.....+.++.++++|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 479999999999999999999999999999875443333332 344456788889999999999995
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcCCCcc
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAI 132 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~srg~~ 132 (240)
..+..++ .+....+++++++|+++.|--
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeeccc
Confidence 4445544 355566788999999986543
No 94
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.86 E-value=1.6e-08 Score=95.48 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=78.0
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-------------------hcC-ceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-------------------ETG-AKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-------------------~~g-~~~~~~l~ell~~aDiV 96 (240)
++|||||.|.||..+|..+...|++|++||+++...+... ..| +...+++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5899999999999999999999999999999764432211 112 45667898999999999
Q ss_pred EEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 97 vl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
+.++|...+.+..+..+.-+.++++++| .++..++ +...+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999977766665555555567777655 4444443 35577777754
No 95
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.85 E-value=1.9e-08 Score=92.28 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=87.6
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----------------cCce--ecCCHHhhcCcCCEEEE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------TGAK--FEEDLDTMLPKCDIVVV 98 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----------------~g~~--~~~~l~ell~~aDiVvl 98 (240)
++|+|||+|.||..+|..+. .|++|++||+++...+...+ .+.. ...+..++.++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 47999999999999997776 49999999997644333322 1222 22346777899999999
Q ss_pred cCCCCh----------hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCC---CC
Q 026360 99 NTPLTE----------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD---HP 165 (240)
Q Consensus 99 ~lp~~~----------~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~---~~ 165 (240)
|+|... ..+..+ ++... +++|.++|+.|+-.+=..+.+.+.+.+.++. |.+|...+. +.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d 151 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD 151 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence 999541 112222 23444 7999999999999998999999888764433 356655443 33
Q ss_pred CCCCCCeEE
Q 026360 166 WRYMPNQAM 174 (240)
Q Consensus 166 l~~~~nv~~ 174 (240)
+...|.+++
T Consensus 152 ~~~p~rvv~ 160 (388)
T PRK15057 152 NLHPSRIVI 160 (388)
T ss_pred ccCCCEEEE
Confidence 444445443
No 96
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.84 E-value=7.5e-08 Score=84.85 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=76.5
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh--------------cC-------------ceecCCHHhh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TG-------------AKFEEDLDTM 89 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~l~el 89 (240)
++|+|||.|.||..+|..+...|++|++||+++...+...+ .| +...+++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999987643321110 01 1233345 56
Q ss_pred cCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 90 l~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
+++||+|+.++|...+.+..+-++.-+.++++++|++...| +....+.+.+..
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~ 135 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER 135 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC
Confidence 78999999999976655555555565668899999877766 466777777743
No 97
>PRK07680 late competence protein ComER; Validated
Probab=98.83 E-value=1.9e-08 Score=87.90 Aligned_cols=103 Identities=12% Similarity=0.269 Sum_probs=76.2
Q ss_pred CeEEEEccChHHHHHHHHhccCCC----EEEEEcCCCCChhHHHh-c-CceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~----~V~~~d~~~~~~~~~~~-~-g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i 110 (240)
++|||||+|.||..++..|...|. +|.+++|++........ . |+....+.++++.++|+|++++| ......++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 379999999999999999988883 79999997544333322 2 56666688888999999999998 22334443
Q ss_pred cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (240)
Q Consensus 111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~ 143 (240)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3455567888999999855 37777776665
No 98
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.82 E-value=1.5e-08 Score=88.69 Aligned_cols=109 Identities=19% Similarity=0.147 Sum_probs=79.9
Q ss_pred CCCeEEEEccChHHHHHHHHhcc--CCCEEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~--~G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
..++|||||+|.||+.+++.+.. .++++. ++|+++...+ .+...|. ..+.+++++++++|+|++|+|.... .-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence 45799999999999999999985 478865 6787653332 2334453 4567899999999999999994322 22
Q ss_pred ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+. ...++.|.-++..+.|.+.+.++|.++.++++..
T Consensus 83 ~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 IV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred HH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 22 2334667767778899888899999999886655
No 99
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.80 E-value=2.6e-08 Score=88.47 Aligned_cols=105 Identities=13% Similarity=0.215 Sum_probs=73.1
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----cC--------------ceecCCHHhhcCcCCEEE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TG--------------AKFEEDLDTMLPKCDIVV 97 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----~g--------------~~~~~~l~ell~~aDiVv 97 (240)
++|+|||.|.||..+|..+...|++|++||+++...+...+ .+ +....++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 58999999999999999999999999999986543332221 11 234457888899999999
Q ss_pred EcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360 98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (240)
Q Consensus 98 l~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~ 143 (240)
+++|...+....+..+.-..++++++++....| +....+.+.+.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 999966543333333444446777776544444 34567777764
No 100
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.80 E-value=1.6e-08 Score=94.38 Aligned_cols=112 Identities=11% Similarity=0.070 Sum_probs=95.6
Q ss_pred HHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-----CceecCCHHhhcCc---CCEEEEcCCCChhhhhcccHHHHccC
Q 026360 47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDRIAKM 118 (240)
Q Consensus 47 iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~ell~~---aDiVvl~lp~~~~t~~~i~~~~l~~m 118 (240)
||+.+|++|...|++|.+|||++.+.+.+.+. |+....+++++++. +|+|++++|..+.+..++ .+.+..+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 79999999999999999999987655555442 46777899998875 899999999998888888 4688899
Q ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159 (240)
Q Consensus 119 k~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 159 (240)
.+|.++||++....-|...+.+.+++..+.+...-|...++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999999999999999999999877766666544
No 101
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.80 E-value=2.8e-08 Score=94.11 Aligned_cols=115 Identities=20% Similarity=0.187 Sum_probs=85.4
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~ 92 (240)
++|||||.|.||..+|..+...|++|++||+++...+.. .+.| +....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 689999999999999999999999999999986543331 2234 355567766 569
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEE-EEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gail-IN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~ 156 (240)
||+|+-++|.+.+.+..+..+.-..+++++++ +|+|.-++ .++.++++. .=+..++..|.
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~ 147 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFN 147 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecC
Confidence 99999999998888888776666667899999 59987666 356666653 22234555444
No 102
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.78 E-value=5.3e-09 Score=81.31 Aligned_cols=92 Identities=20% Similarity=0.322 Sum_probs=57.2
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEE-cCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
.-.+|||||.|++|..+++.|...|++|..+ +|+....+.+.. .+...+.+++++++++|++++++|++. ... +-+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~-va~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAE-VAE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHH-HHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHH-HHH
Confidence 4679999999999999999999999998765 565433333332 333444578899999999999999663 222 233
Q ss_pred HHHcc--CCCCCEEEEcC
Q 026360 113 DRIAK--MKKGVLIVNNA 128 (240)
Q Consensus 113 ~~l~~--mk~gailIN~s 128 (240)
+.-.. .++|.+++.+|
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 44443 68999999996
No 103
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.78 E-value=1.5e-08 Score=81.44 Aligned_cols=92 Identities=23% Similarity=0.344 Sum_probs=65.0
Q ss_pred eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEcCCCC
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDiVvl~lp~~ 103 (240)
+|+|+|.|++|.++|..|...|.+|..|++++...+..... .+...++++++++++|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 68999999999999999999999999999875322222211 1234578999999999999999932
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
..+. +-++....++++..+|++..|-
T Consensus 81 -~~~~-~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 -AHRE-VLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred -HHHH-HHHHHhhccCCCCEEEEecCCc
Confidence 2233 3345666678899999998763
No 104
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.78 E-value=2.8e-08 Score=86.08 Aligned_cols=103 Identities=14% Similarity=0.250 Sum_probs=75.4
Q ss_pred CeEEEEccChHHHHHHHHhccCCCE---EEEEcCCCCChhHHHh-c-CceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~---V~~~d~~~~~~~~~~~-~-g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
++|||||+|+||+++++.|...|.. +.++++++.+.+.... . ++....+.+++++++|+|++++| ......++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 3799999999999999999887754 5788886544333333 3 45666788899999999999999 333444432
Q ss_pred HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (240)
Q Consensus 112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g 145 (240)
+ +. ++++.++|+++ .-+..+.|.+.+..+
T Consensus 80 -~-l~-~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 80 -A-LR-FRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred -H-hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 2 32 57889999987 447888888888654
No 105
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.77 E-value=5.3e-08 Score=92.07 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=84.3
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP 91 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~ 91 (240)
=++|||||.|.||..+|..+...|++|++||+++...+.. .+.| +....++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3679999999999999999999999999999976443321 1123 234567766 56
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEE-EcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (240)
Q Consensus 92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI-N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~ 156 (240)
+||+|+.++|...+.+..+..+.-+.++++++|. |+|.-++ ..+.++++. .....++.-|.
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~ 145 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFN 145 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccC
Confidence 9999999999888888877666666788888776 6665443 467777643 33445666554
No 106
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.76 E-value=9.2e-09 Score=80.75 Aligned_cols=94 Identities=26% Similarity=0.378 Sum_probs=69.1
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhH-HHhcC---c--eecCCHHhhcCcCCEEEEcCCCChh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQL-EKETG---A--KFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~-~~~~g---~--~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
+++|+++.|||.|.+|+.++..|...|++ |++++|+..+.+. +..++ + ...+++.+.+.++|+|+.++|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 68999999999999999999999999997 9999997543332 23331 2 234566677899999999998543
Q ss_pred hhhcccHHHHccCCCCC-EEEEcCC
Q 026360 106 TRGMFDKDRIAKMKKGV-LIVNNAR 129 (240)
Q Consensus 106 t~~~i~~~~l~~mk~ga-ilIN~sr 129 (240)
..+.++.++..++.. +++|++.
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-S
T ss_pred --cccCHHHHHHHHhhhhceecccc
Confidence 367777777665543 7888763
No 107
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.74 E-value=3.6e-08 Score=86.12 Aligned_cols=90 Identities=22% Similarity=0.350 Sum_probs=72.6
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
-|.||+|+|||||+-|++-|..|+..|.+|++--|... +.+.+.+.|++.. +.+|+.++||+|++.+|+.. ...++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~-q~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQ-QKEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhh-HHHHHH
Confidence 48999999999999999999999999999776655433 3566777788755 99999999999999999543 344556
Q ss_pred HHHHccCCCCCEE
Q 026360 112 KDRIAKMKKGVLI 124 (240)
Q Consensus 112 ~~~l~~mk~gail 124 (240)
++.-..|+.|+.+
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 6777788888854
No 108
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.72 E-value=6.4e-08 Score=78.82 Aligned_cols=82 Identities=28% Similarity=0.380 Sum_probs=69.4
Q ss_pred cccCCCeEEEEccChH-HHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360 32 YDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~i-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i 110 (240)
.++.|+++.|||.|.+ |..+|+.|...|.+|++.+++. .++.+.+.++|+|+.+++.. +++
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii 101 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLV 101 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----cee
Confidence 3689999999999996 8889999999999999999752 36778899999999999832 367
Q ss_pred cHHHHccCCCCCEEEEcCCCcccC
Q 026360 111 DKDRIAKMKKGVLIVNNARGAIMD 134 (240)
Q Consensus 111 ~~~~l~~mk~gailIN~srg~~vd 134 (240)
..+. ++++.++||+|...-+|
T Consensus 102 ~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 102 KGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred cHHH---ccCCeEEEEccCCCccc
Confidence 7764 57899999999888777
No 109
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.69 E-value=5.8e-08 Score=84.28 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=71.9
Q ss_pred CeEEEEccChHHHHHHHHhccCC---CEEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G---~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
++|+|||+|.||..++..+...| .+|.+++|++...+.... .|+....+.++++.++|+|++++|.. ....++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence 58999999999999999998888 789999997644444443 46666668888899999999999832 233332 2
Q ss_pred HHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~ 143 (240)
+....+ +.++|++.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 222223 46788887653 5666766654
No 110
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.68 E-value=1.3e-07 Score=82.86 Aligned_cols=103 Identities=14% Similarity=0.269 Sum_probs=73.6
Q ss_pred CeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCCC-hhHH-Hhc-CceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMD-PQLE-KET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~~-~~~~-~~~-g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
++|+|||+|.||.++++.+...| .+|.+|+++... .... ... ++....+.+++++++|+|++++|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 47999999999999999998877 679999875422 1111 222 234446788889999999999992 223333
Q ss_pred ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~ 143 (240)
+ .+....++++.++|.+.-| ++.+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3 3444456788899999888 67778887764
No 111
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.67 E-value=8.6e-08 Score=84.61 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=65.6
Q ss_pred ccccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEc-CCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360 31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD-RVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 31 ~~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d-~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~ 108 (240)
+.++.||+|+||| .|.||+.+|.+|...|+.|++|+ ++. ++++++++||+|+++++..+
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~---- 213 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE---- 213 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----
Confidence 3478999999999 99999999999999999999996 432 46888999999999998543
Q ss_pred cccHHHHccCCCCCEEEEcCCCc
Q 026360 109 MFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN~srg~ 131 (240)
.+.... +|+|+++||+|--.
T Consensus 214 ~v~~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW---IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe---ecCCCEEEEcCCcc
Confidence 444333 89999999998544
No 112
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.67 E-value=1.1e-07 Score=82.61 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=78.5
Q ss_pred CeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
++|||||+|+||++++..|...| .+|++.+|+..... ....+|+....+.+++..++|+|++++. |+. -
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence 58999999999999999999888 57999999875554 5667777656677899999999999996 332 2
Q ss_pred HHHHccCC---CCCEEEEcCCCcccCHHHHHHHHH
Q 026360 112 KDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS 143 (240)
Q Consensus 112 ~~~l~~mk---~gailIN~srg~~vd~~aL~~aL~ 143 (240)
.+.++.++ ++.++|.++-| +..+.|.+++.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 34555555 68999999987 67777887775
No 113
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.64 E-value=1.2e-07 Score=83.20 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=68.2
Q ss_pred ccccCCCeEEEEccChH-HHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~i-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||.|.+ |+.+|..|...|+.|++++.. ..++.+.+++||+|++++| ..++
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG----~~~~ 214 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVG----KRNV 214 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCC----CcCc
Confidence 45789999999999988 999999999999999987642 2378889999999999998 4567
Q ss_pred ccHHHHccCCCCCEEEEcCCCcc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGAI 132 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~~ 132 (240)
++.+ .+|+|+++||+|...+
T Consensus 215 i~~~---~ik~gavVIDVGin~~ 234 (285)
T PRK14189 215 LTAD---MVKPGATVIDVGMNRD 234 (285)
T ss_pred cCHH---HcCCCCEEEEcccccc
Confidence 7764 4799999999996543
No 114
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.61 E-value=2.4e-07 Score=79.28 Aligned_cols=106 Identities=13% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCCeEEEEccChHHHHHHHHhccCC---CE-EEEEcCC-CCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRV-KMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G---~~-V~~~d~~-~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~ 108 (240)
.+++|+|||.|.||+.++..+...| .+ +++++++ +...+. ....++....+.+++++++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 4678999999999999999987665 23 6677764 222222 23356666678889999999999999932 2233
Q ss_pred cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g 145 (240)
++ ++.-..++ +.++|+++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 22 22222233 5789999877 5666677766543
No 115
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.60 E-value=2.6e-07 Score=83.35 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=74.6
Q ss_pred HHHHHHHhccCCCEEEEEcCCCC-----ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCC
Q 026360 48 GKLLLQRLKPFNCNLLYHDRVKM-----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (240)
Q Consensus 48 G~~~A~~l~~~G~~V~~~d~~~~-----~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~ga 122 (240)
|..+|..|...|++|++||+++. ..+.....|+....+..++++++|+|++++|....++.++ ......+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78899999989999999998753 1223445677777788899999999999999665466666 36777889999
Q ss_pred EEEEcCCCcccCH-HHHHHHHH
Q 026360 123 LIVNNARGAIMDT-QAVVDACS 143 (240)
Q Consensus 123 ilIN~srg~~vd~-~aL~~aL~ 143 (240)
++||++.++.... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887665 56666664
No 116
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.59 E-value=1.9e-07 Score=81.79 Aligned_cols=80 Identities=24% Similarity=0.325 Sum_probs=66.3
Q ss_pred ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||+++|||. |.+|+.+|..|...|+.|++|... ..++++.+++||+|+++++.. +.
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~----~~ 214 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRG----HF 214 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcc----cc
Confidence 45799999999999 999999999999999999998431 126888999999999999843 44
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. +|+|+++||+|-..
T Consensus 215 v~~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH---ccCCcEEEEeccee
Confidence 55543 89999999998554
No 117
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.56 E-value=2.1e-07 Score=82.54 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=99.6
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhhcccHH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
.-++|||||+|++|+-+|..+...|+.|+.+||+. -.+.+...|....+.+.++++ +.|+|++|+.- ..+..++-.-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilaty 128 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATY 128 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhc
Confidence 45789999999999999999999999999999965 555566778877788888874 59999999852 2233443333
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC-CCCCCCCCCCCCCCCeEEcCCCC
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN-PQPAPKDHPWRYMPNQAMTPHVS 179 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~-~EP~~~~~~l~~~~nv~~TPH~a 179 (240)
-++++|.|++++++-.-....-.++.+.|-+.--. +-+.. ..|...+|.+..+|=|+.--.++
T Consensus 129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDI---lctHpmfGPksvnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDI---LCTHPMFGPKSVNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred CchhhccceeEeeeeecchhHHHHHHHhCccccce---EeecCCcCCCcCCCccccCceEEEEeecc
Confidence 35668999999999988888888888888552111 11111 13444566666677565554443
No 118
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.56 E-value=3e-07 Score=80.18 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=72.6
Q ss_pred CeEEEEccChHHHHHHHHhccC--CCE-EEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~--G~~-V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
++|||||+|.||+.+++.+... +++ +.++|+++...+. .+..+...+.++++++.++|+|+.|+|. ....-+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~--~~~~~~~- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV--NAVEEVV- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh--HHHHHHH-
Confidence 4899999999999999998765 566 4567886533332 2344566667899999999999999973 2221112
Q ss_pred HHHccCCCCCEEEEcCCCcccCH---HHHHHHHHhCCcc
Q 026360 113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA 148 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~~vd~---~aL~~aL~~g~i~ 148 (240)
...++.|.-++.++.|.+.|. +.|.++.++++..
T Consensus 79 --~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 79 --PKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred --HHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 223455666677787877764 4566777665543
No 119
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.54 E-value=3.1e-07 Score=86.56 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=75.7
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CC-------------------------
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED------------------------- 85 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~------------------------- 85 (240)
.+.+.++.|+|+|.+|...++.++.+|..|+++|+++...+.++.+|...+ +.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 356789999999999999999999999999999988766666666776531 10
Q ss_pred HHhhcCcCCEEEEcC--CCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360 86 LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 86 l~ell~~aDiVvl~l--p~~~~t~~~i~~~~l~~mk~gailIN~sr 129 (240)
+.+.++++|+|+.++ |..+ ...++.++.++.||+|+++||++-
T Consensus 241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 345578899998887 3211 235788899999999999999973
No 120
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.51 E-value=4.9e-07 Score=79.43 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=67.3
Q ss_pred ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.|+++.|||.|. +|+.+|..|...|+.|++++++. .++.+.+++||+|+.+++. .++
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~ 214 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGL 214 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----Ccc
Confidence 3479999999999998 99999999999999999988632 2678889999999999983 346
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. +|+|+++||+|-..
T Consensus 215 i~~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTKDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred cCHHH---cCCCcEEEEcCCCc
Confidence 77654 68999999999644
No 121
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.50 E-value=6e-07 Score=80.57 Aligned_cols=107 Identities=18% Similarity=0.281 Sum_probs=75.4
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-----------------ecCCHHhhcCcCCEEEEc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------------FEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~l~ell~~aDiVvl~ 99 (240)
++|+|||.|.||..+|..|...|++|.++++++. .+...+.|.. ...+. +.++.+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 5799999999999999999999999999998542 2333333322 12234 567899999999
Q ss_pred CCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 100 lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+|.. .....+ .+....++++.++|.+.. ++-..+.+.+.+...++.
T Consensus 81 vk~~-~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 81 VKSA-ATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVL 126 (341)
T ss_pred ecCc-chHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEE
Confidence 9853 334433 455666788999988865 445566777777665543
No 122
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.50 E-value=1e-06 Score=77.46 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=74.8
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-----------ecCCHHhhcCcCCEEEEcCCCChh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------FEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
++|+|||.|.||..+|..|...|++|+++++++...+.....|.. ...+.+++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 479999999999999999999999999999865444444333432 13445555 8999999999843 3
Q ss_pred hhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+..++ +.....+.+++.+|....| +-.++.+.+.+....+.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 33333 3444456777888888776 33456666666655554
No 123
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.48 E-value=4.7e-07 Score=76.61 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=63.7
Q ss_pred CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh--------cCc--e-ecCCHHhhcCcCCEEEEcCCCCh
Q 026360 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------TGA--K-FEEDLDTMLPKCDIVVVNTPLTE 104 (240)
Q Consensus 37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~--~-~~~~l~ell~~aDiVvl~lp~~~ 104 (240)
++|+||| .|.||..++..|...|++|.++++++...+.... .|. . ...+..+.++++|+|++++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 4799997 8999999999999999999999987543322211 121 1 1236678889999999999943
Q ss_pred hhhhcccHHHHccCCCCCEEEEcCCCccc
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIM 133 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~srg~~v 133 (240)
....++ ++.-..++ +.++|++.-|--.
T Consensus 80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 80 HVLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 223332 22222333 5899999877433
No 124
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.46 E-value=2.2e-07 Score=75.56 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=68.3
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--------------------------CCH
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------------------EDL 86 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--------------------------~~l 86 (240)
.+...+|.|+|.|++|+..++.++++|++|+.+|..+.........+...+ ..+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 567899999999999999999999999999999976533333333332211 235
Q ss_pred HhhcCcCCEEEEcC-CCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 87 DTMLPKCDIVVVNT-PLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 87 ~ell~~aDiVvl~l-p~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.+.++.+|+|+.++ .-.+..-.++.++.++.||++++|+|+|
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 57788999998643 2244556789999999999999999997
No 125
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.46 E-value=1.3e-06 Score=63.15 Aligned_cols=66 Identities=32% Similarity=0.473 Sum_probs=55.4
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
.+.+++++|+|.|.+|+.++..+... +.+|.++|+ |+++.+.+. .+.+.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~----~~~~~ 69 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPA----GVPVL 69 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCC----CCCch
Confidence 47899999999999999999999988 567888887 999999873 34455
Q ss_pred HHHHccCCCCCEEEEcC
Q 026360 112 KDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 112 ~~~l~~mk~gailIN~s 128 (240)
++....+++++++++++
T Consensus 70 ~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 70 EEATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHHhcCCCCEEEecC
Confidence 55678899999999874
No 126
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.44 E-value=2.8e-06 Score=72.39 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=90.7
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCE---EEEEcCCC----CCh--------hHHHhcCceec-CCHHhhcCcCCE
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVK----MDP--------QLEKETGAKFE-EDLDTMLPKCDI 95 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~---V~~~d~~~----~~~--------~~~~~~g~~~~-~~l~ell~~aDi 95 (240)
.+++++++.|+|.|.+|+.+|..|...|.. |+++|++. ... +.++..+.... .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 358899999999999999999999999984 99999973 221 12233221111 267778889999
Q ss_pred EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCC-ccEEEeeCCCCCCCCCCCCCCCCCCeEE
Q 026360 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH-IAGYSGDVWNPQPAPKDHPWRYMPNQAM 174 (240)
Q Consensus 96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~l~~~~nv~~ 174 (240)
|+.++| .++++.+.++.|.++.++..++.. ..+.-+.++.+.|- +..-+. +. ...+..|+++
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~-----~~~Q~nn~~~ 163 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD-----FPNQVNNVLG 163 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC-----Cccccceeee
Confidence 999987 467888899999999999998833 34444444444433 232221 11 2236788999
Q ss_pred cCCCCC
Q 026360 175 TPHVSG 180 (240)
Q Consensus 175 TPH~a~ 180 (240)
-|=++-
T Consensus 164 fPg~~~ 169 (226)
T cd05311 164 FPGIFR 169 (226)
T ss_pred cchhhH
Confidence 997743
No 127
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.43 E-value=1.4e-06 Score=76.78 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=75.0
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-------------ecCCHHhhcCcCCEEEEcCCCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------------~~~~l~ell~~aDiVvl~lp~~ 103 (240)
++|+|+|.|.||..+|..|...|++|+++++ +...+...+.|.. ..++.++....+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4799999999999999999999999999998 4333333333321 1235566678999999999843
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
.+...+ .+....++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 333332 3344456778888887665 44567777777665544
No 128
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.43 E-value=8.5e-07 Score=79.03 Aligned_cols=93 Identities=27% Similarity=0.380 Sum_probs=66.0
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCCh-hHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~-~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.|++|+|||.|.||+.+++.++..| .+|+++++++... +.+..+|.... +++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999866 5799999976433 44555665432 3466778899999999985433 222
Q ss_pred ccHHHHccC-CCCCEEEEcC
Q 026360 110 FDKDRIAKM-KKGVLIVNNA 128 (240)
Q Consensus 110 i~~~~l~~m-k~gailIN~s 128 (240)
+ ...++.. +++.++||++
T Consensus 255 ~-~~~~~~~~~~~~~viDla 273 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeC
Confidence 2 2333322 3567888887
No 129
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.42 E-value=5.3e-07 Score=83.50 Aligned_cols=94 Identities=27% Similarity=0.429 Sum_probs=69.0
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChh-HHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQ-LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~-~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~t~~ 108 (240)
.+.|++++|+|.|.||..+++.|+..| .+|++++++..... .+...|... ..++.+.+.++|+|+.+++. ...
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 68999999764333 344455432 24566788999999999863 345
Q ss_pred cccHHHHccCC----CCCEEEEcCC
Q 026360 109 MFDKDRIAKMK----KGVLIVNNAR 129 (240)
Q Consensus 109 ~i~~~~l~~mk----~gailIN~sr 129 (240)
+++.+.++.+. .+.+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 67777666542 2347778763
No 130
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=4.7e-06 Score=75.37 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=118.1
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hc----CceecCCHHhh---cCcCCEEEEcCCCChhhh
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ET----GAKFEEDLDTM---LPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~----g~~~~~~l~el---l~~aDiVvl~lp~~~~t~ 107 (240)
...||+||+|.||+.+|......|++|.+|+|+..+.+.+- +. .+....+++|+ ++.-.-|++.+.......
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 35699999999999999999999999999999875544432 22 23344567765 455666777765432223
Q ss_pred hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHH
Q 026360 108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQV 187 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~ 187 (240)
..| ++++..|.+|-++||-+...--|+..-.++|.+..|.+.+.-|...|--.-..|- + +-|.++++++
T Consensus 83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-------i---MpGG~~eay~ 151 (473)
T COG0362 83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-------I---MPGGQKEAYE 151 (473)
T ss_pred HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-------c---CCCCCHHHHH
Confidence 333 4678889999999999999999999999999999999999999888754322222 1 2377899998
Q ss_pred HhhhhHHHHHHHHHHHccCCC
Q 026360 188 IVHFFPVFMRLFTSFLSHKSN 208 (240)
Q Consensus 188 ~~~~~~~~~~~~~~~~~g~~~ 208 (240)
.+.- +.+.|.+-..|+|+
T Consensus 152 ~v~p---il~~IaAk~~g~pC 169 (473)
T COG0362 152 LVAP---ILTKIAAKVDGEPC 169 (473)
T ss_pred HHHH---HHHHHHhhcCCCCc
Confidence 8776 44557777778776
No 131
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.42 E-value=3.6e-07 Score=75.59 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=68.9
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH--------------------hcCceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------------------ETGAKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~--------------------~~g~~~~~~l~ell~~aDiV 96 (240)
|+|+|||+|.+|-.+|..+...|++|+++|.++...+... .-......+.++.++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 6899999999999999999999999999998753211111 01234456788889999999
Q ss_pred EEcCCCChhhhh------cc--cHHHHccCCCCCEEEEcCCCcccCHHHHH-HHHHh
Q 026360 97 VVNTPLTEKTRG------MF--DKDRIAKMKKGVLIVNNARGAIMDTQAVV-DACSS 144 (240)
Q Consensus 97 vl~lp~~~~t~~------~i--~~~~l~~mk~gailIN~srg~~vd~~aL~-~aL~~ 144 (240)
++|+|-.....+ +. -+...+.++++.++|.-|+-.+=..+.+. ..|++
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence 999983221111 11 23556668899999999998887777444 44444
No 132
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.42 E-value=7.5e-06 Score=76.97 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=89.4
Q ss_pred CeEEEEccChHHHHHHHHhccC--CCEEEEEcCCCCChhHHH----------------h-cC--ceecCCHHhhcCcCCE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK----------------E-TG--AKFEEDLDTMLPKCDI 95 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~----------------~-~g--~~~~~~l~ell~~aDi 95 (240)
++|+|||+|.+|..+|..|... |++|+++|.++...+... + .+ ....++.++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 6899999999999999999866 688999997653322211 1 01 3344567788999999
Q ss_pred EEEcCCCCh-----------hhhhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC-CCCCCCC
Q 026360 96 VVVNTPLTE-----------KTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAP 161 (240)
Q Consensus 96 Vvl~lp~~~-----------~t~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV-~~~EP~~ 161 (240)
+++|+|... +...+. .++.-+.++++.++|.-|.-.+=..+.+.+.+.+.. .|.-..| +.+|=+.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 999986211 111221 234566689999999999988777788888877631 1111111 4556444
Q ss_pred CC---CCCCCCCCeEEc
Q 026360 162 KD---HPWRYMPNQAMT 175 (240)
Q Consensus 162 ~~---~~l~~~~nv~~T 175 (240)
+. +.+...|++++.
T Consensus 161 ~G~a~~d~~~p~riViG 177 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIG 177 (473)
T ss_pred CCCcccccCCCCEEEEc
Confidence 33 445566666643
No 133
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.41 E-value=5.8e-07 Score=73.96 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=77.6
Q ss_pred eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-----------h-------------cCceecCCHHhhcCcC
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPKC 93 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~ell~~a 93 (240)
+|+|||.|.||+.+|..+...|++|..||+++...+... . ..+...++++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999999764321110 0 1134557888888 99
Q ss_pred CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
|+|+=++|-+.+.+.-+-++.-+.++++++|...+ +-+....|...+. ..-+..++--|
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT--Ssl~i~~la~~~~-~p~R~ig~Hf~ 138 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNT--SSLSISELAAALS-RPERFIGMHFF 138 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSS-TGGGEEEEEE-
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecC--CCCCHHHHHhccC-cCceEEEEecc
Confidence 99999999888888877778888889999886654 3456667777664 33344455533
No 134
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.39 E-value=1.2e-06 Score=75.99 Aligned_cols=98 Identities=19% Similarity=0.364 Sum_probs=65.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i 110 (240)
..++|||||+|+||.++++.+...| .++++++++... .+.....+..++++++|+|++++| ......++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl 74 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL 74 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH
Confidence 3468999999999999999998765 248888886422 233445577788889999999998 23334443
Q ss_pred cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360 111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (240)
Q Consensus 111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~ 143 (240)
. +....++++ .+|.+.-| ++.+.+.+.+.
T Consensus 75 ~-~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 75 L-EIKPYLGSK-LLISICGG--LNLKTLEEMVG 103 (260)
T ss_pred H-HHHhhccCC-EEEEEeCC--ccHHHHHHHcC
Confidence 2 343445544 55666555 34555555553
No 135
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.35 E-value=2.1e-06 Score=71.85 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=63.9
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hhH-HHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQL-EKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~-~~~~g~~-~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
++++|+|.|+||..+|+++...|++|++-+++..+ .+. ++.++.. ...+.++..+.+|+|++++|.... .. +.++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~-v~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PD-VLAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-Hh-HHHH
Confidence 68999999999999999999999999888655432 222 2222221 224788899999999999995322 22 2334
Q ss_pred HHccCCCCCEEEEcCCC
Q 026360 114 RIAKMKKGVLIVNNARG 130 (240)
Q Consensus 114 ~l~~mk~gailIN~srg 130 (240)
....+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 444455 8899998754
No 136
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.35 E-value=1.3e-06 Score=82.43 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=74.6
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CCH------------------------
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDL------------------------ 86 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l------------------------ 86 (240)
...+.+|.|+|.|.+|...++.++.+|.+|+++|+++...+.++++|.+.. +..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 356999999999999999999999999999999998877778888887622 110
Q ss_pred -HhhcCcCCEEEEcCCCChh-hhhcccHHHHccCCCCCEEEEcC
Q 026360 87 -DTMLPKCDIVVVNTPLTEK-TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 87 -~ell~~aDiVvl~lp~~~~-t~~~i~~~~l~~mk~gailIN~s 128 (240)
.+.+..+|+|+.+...... ...++.++.++.||+|+++|++|
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 1113579999998853211 22455688999999999999997
No 137
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.34 E-value=1e-06 Score=81.74 Aligned_cols=93 Identities=26% Similarity=0.432 Sum_probs=67.6
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-HHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~t~~ 108 (240)
.+.|++++|+|.|.||+.+++.|...|. +|+++++++.... .+..+|... ..++.+.+.++|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 7999999764433 444455332 235667788999999998743 34
Q ss_pred cccHHHHccC-----CCCCEEEEcC
Q 026360 109 MFDKDRIAKM-----KKGVLIVNNA 128 (240)
Q Consensus 109 ~i~~~~l~~m-----k~gailIN~s 128 (240)
++..+.++.+ +.+.++||++
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 4566655443 2456777775
No 138
>PLN00203 glutamyl-tRNA reductase
Probab=98.34 E-value=9.8e-07 Score=83.66 Aligned_cols=93 Identities=19% Similarity=0.314 Sum_probs=69.3
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHH-hc-Cc--e--ecCCHHhhcCcCCEEEEcCCCChh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ET-GA--K--FEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~-~~-g~--~--~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
++.+++|+|||.|.||+.+++.|...|. +|++++|+........ .+ +. . ..+++.+.+.++|+|+.++|.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s--- 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS--- 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence 3789999999999999999999999997 6999999864443333 23 22 1 234667888999999999873
Q ss_pred hhhcccHHHHccCCC-------CCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKK-------GVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~-------gailIN~s 128 (240)
...++..+.++.+++ ..+|||++
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 355677888777643 24788876
No 139
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.33 E-value=2.4e-06 Score=76.24 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=63.5
Q ss_pred cCCCeEEEEccChHHHHHHHHhcc-CC-CEEEEEcCCCCChhHHHh-c---C--ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE-T---G--AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~~~~-~---g--~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
...++++|||.|.+|+.+++.+.. ++ .+|.+|+|++.+.+.+.+ . | +..+.+.++.+++||+|+.++|..
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 357899999999999999985543 44 679999998654443322 1 3 445678899999999998888744
Q ss_pred hhhcccHHHHccCCCCCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~s 128 (240)
..++..+ .++||+.+.-++
T Consensus 201 -~pvl~~~---~l~~g~~i~~ig 219 (314)
T PRK06141 201 -EPLVRGE---WLKPGTHLDLVG 219 (314)
T ss_pred -CCEecHH---HcCCCCEEEeeC
Confidence 4556553 468998444444
No 140
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.32 E-value=1.8e-06 Score=76.77 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=70.8
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh--------------cCceecCCHHhhcCcCCEEEEcCCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g~~~~~~l~ell~~aDiVvl~lp~ 102 (240)
++|+|+|.|.+|.++|+.|...|++|..|.+++.-...... .++....|++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 58999999999999999999999999999986422211111 123445789999999999999999
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcCCCcccCH
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~ 135 (240)
+...+.++ ++.-..++++..+|+++.|=-.+.
T Consensus 81 s~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t 112 (329)
T COG0240 81 SQALREVL-RQLKPLLLKDAIIVSATKGLEPET 112 (329)
T ss_pred hHHHHHHH-HHHhhhccCCCeEEEEeccccCCC
Confidence 23333333 233345789999999998855443
No 141
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.32 E-value=4.4e-06 Score=73.29 Aligned_cols=79 Identities=19% Similarity=0.343 Sum_probs=65.7
Q ss_pred ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||.|. +|+.+|..|...|+.|++++... .++++.+++||+|+.+++- .++
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~----p~~ 215 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGK----PGF 215 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCC----ccc
Confidence 4579999999999998 99999999999999999987531 3688899999999999952 245
Q ss_pred ccHHHHccCCCCCEEEEcCCC
Q 026360 110 FDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg 130 (240)
+..+ .+|+|+++||+|-.
T Consensus 216 v~~~---~vk~gavVIDvGin 233 (285)
T PRK10792 216 IPGE---WIKPGAIVIDVGIN 233 (285)
T ss_pred ccHH---HcCCCcEEEEcccc
Confidence 6654 46999999999943
No 142
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.31 E-value=2.2e-06 Score=69.19 Aligned_cols=81 Identities=25% Similarity=0.332 Sum_probs=57.8
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.+++||++.|||-+ .+|+.++..|...|+.|+.++... .++++.+++||+|+.+++- .++
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~----~~~ 92 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGK----PNL 92 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSS----TT-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecc----ccc
Confidence 457999999999987 599999999999999999887632 3788889999999999972 455
Q ss_pred ccHHHHccCCCCCEEEEcCCCcc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGAI 132 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~~ 132 (240)
+..+ .+|+|+++||++.-..
T Consensus 93 i~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IKAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-GG---GS-TTEEEEE--CEEE
T ss_pred cccc---cccCCcEEEecCCccc
Confidence 6554 4699999999986554
No 143
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.30 E-value=5.6e-06 Score=71.88 Aligned_cols=125 Identities=15% Similarity=0.146 Sum_probs=77.4
Q ss_pred HHHHhccCC--CEEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEE
Q 026360 51 LLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 126 (240)
Q Consensus 51 ~A~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN 126 (240)
+|+.|+..| .+|+++|+++...+.+.+.|+. ...+ .+.++++|+|++|+|.. .+..+ -++....+++|+++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-~~~~~-l~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-AIEDV-LEEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-HHHHH-HHHHHCGS-TTSEEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-HHHHH-HHHhhhhcCCCcEEEE
Confidence 467788777 7899999987666666677764 2223 57789999999999932 23333 3466677999999999
Q ss_pred cCCCcccCHHHHHHHHHhCCccEEEee-CCCCC---CCCCCCCCCCCCCeEEcCCCC
Q 026360 127 NARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQ---PAPKDHPWRYMPNQAMTPHVS 179 (240)
Q Consensus 127 ~srg~~vd~~aL~~aL~~g~i~ga~lD-V~~~E---P~~~~~~l~~~~nv~~TPH~a 179 (240)
++.-+.--.+++.+.+. ....+.+.- -+.+| |...+..++.-.++++||+-.
T Consensus 78 v~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 78 VGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp --S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred eCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 99876655556666665 233333322 12222 222356788888999999865
No 144
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.28 E-value=2.9e-06 Score=74.44 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=66.5
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-| .+|+.+|..|...|+.|++++... .++.+.+++||+|+.+++ ..++
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG----~p~~ 213 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVG----KPDL 213 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecC----CCCc
Confidence 457899999999999 999999999999999999886421 256788999999999997 3456
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+.+ |+|+++||+|-..
T Consensus 214 i~~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 214 IKASMV---KKGAVVVDIGINR 232 (285)
T ss_pred CCHHHc---CCCcEEEEeeccc
Confidence 776654 9999999999544
No 145
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.27 E-value=2.8e-06 Score=77.28 Aligned_cols=98 Identities=12% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCCeEEEEccChHHHHHHHHhccCC-------CEEEEEcCCCCC-----hhHHHh--------------cCceecCCHHh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKMD-----PQLEKE--------------TGAKFEEDLDT 88 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G-------~~V~~~d~~~~~-----~~~~~~--------------~g~~~~~~l~e 88 (240)
.-++|+|||.|.+|.++|..|...| .+|..|.+++.- .+.... .++...+++++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 3469999999999999999998766 789999876531 111111 02334568889
Q ss_pred hcCcCCEEEEcCCCChhhhhcccHHHHc--cCCCCCEEEEcCCCcccC
Q 026360 89 MLPKCDIVVVNTPLTEKTRGMFDKDRIA--KMKKGVLIVNNARGAIMD 134 (240)
Q Consensus 89 ll~~aDiVvl~lp~~~~t~~~i~~~~l~--~mk~gailIN~srg~~vd 134 (240)
+++++|+|++++|. ...+.++ .+.-. .+++++++|+++.|=-.+
T Consensus 90 av~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 90 AVEDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHhcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence 99999999999992 2233332 23333 466678999998874433
No 146
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.26 E-value=4.8e-06 Score=73.28 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=64.9
Q ss_pred ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.|+++.|+|.|. +|+.+|..|...|+.|+++++. ..++.+.++++|+|+.+++. + +.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~--------------t~~L~~~~~~aDIvI~AtG~-~---~~ 215 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR--------------TQNLPELVKQADIIVGAVGK-P---EL 215 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC--------------chhHHHHhccCCEEEEccCC-C---Cc
Confidence 4578999999999998 9999999999999999999862 12567777999999999962 2 25
Q ss_pred ccHHHHccCCCCCEEEEcCCC
Q 026360 110 FDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg 130 (240)
+..+. +|+|++++|++-.
T Consensus 216 v~~~~---lk~gavViDvg~n 233 (283)
T PRK14192 216 IKKDW---IKQGAVVVDAGFH 233 (283)
T ss_pred CCHHH---cCCCCEEEEEEEe
Confidence 66554 7999999999844
No 147
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.26 E-value=3e-06 Score=76.50 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=66.3
Q ss_pred eEEEEccChHHHHHHHHhccCC--------CEEEEEcCCCC--Chh---HHHh--------------cCceecCCHHhhc
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKM--DPQ---LEKE--------------TGAKFEEDLDTML 90 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G--------~~V~~~d~~~~--~~~---~~~~--------------~g~~~~~~l~ell 90 (240)
+|+|||.|++|.++|..+...| .+|..|.+.+. ... .... .++...+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998877 89999987320 111 1100 0123446899999
Q ss_pred CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCccc
Q 026360 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133 (240)
Q Consensus 91 ~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~v 133 (240)
++||+|++++|. ...+.+ -.+.-..++++..+|+++.|=-.
T Consensus 81 ~~ADiIIlAVPs-~~i~~v-l~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGI-CKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred hcCCEEEEECCh-HHHHHH-HHHHHhhcCCCCEEEEEeCCccc
Confidence 999999999993 233333 33444567888999999988433
No 148
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.25 E-value=7e-07 Score=75.32 Aligned_cols=110 Identities=11% Similarity=0.129 Sum_probs=74.8
Q ss_pred CCCeEEEEccChHHHHHHHHh--ccCCCEEEE-EcCCCCChh-HHHhcCceecCCHHhhcCc--CCEEEEcCCCChhh--
Q 026360 35 EGKTVGTVGCGRIGKLLLQRL--KPFNCNLLY-HDRVKMDPQ-LEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKT-- 106 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l--~~~G~~V~~-~d~~~~~~~-~~~~~g~~~~~~l~ell~~--aDiVvl~lp~~~~t-- 106 (240)
...+++|||+|.+|+.+++.+ ...|+++++ +|+++.... .....++...+++++++++ .|.+++++|.+...
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i 162 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV 162 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence 456899999999999999863 457888764 566432221 1111112223467777755 99999999976542
Q ss_pred -hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 107 -RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 107 -~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
..+.......-+...++.+|+.+|.+|+.++|..+|..
T Consensus 163 ~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 163 ADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred HHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 22222333344566788999999999999999999874
No 149
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.25 E-value=3.7e-06 Score=75.42 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=67.2
Q ss_pred CCCeEEEEccChHHHHHHHHhcc--CCCEEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~--~G~~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t 106 (240)
.-+++||||.|.+|+..++.+.. ...+|.+||+++...+.+. +.| +..+.+.++++++||+|++|+|.+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~--- 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR--- 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence 35899999999999997776653 2457999999865543322 235 345679999999999999999853
Q ss_pred hhcccHHHHccCCCCCEEEEcCCC
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~srg 130 (240)
..++..+. +|||+.+..+|..
T Consensus 204 ~P~~~~~~---l~~g~~v~~vGs~ 224 (325)
T TIGR02371 204 KPVVKADW---VSEGTHINAIGAD 224 (325)
T ss_pred CcEecHHH---cCCCCEEEecCCC
Confidence 45565543 5999999999853
No 150
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.24 E-value=1.2e-05 Score=63.50 Aligned_cols=80 Identities=25% Similarity=0.332 Sum_probs=66.2
Q ss_pred ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.+++|+++.|+|- ..+|+.+|..|...|+.|..++.+. .++++.+++||+|+.+++.. ++
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~ 84 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EK 84 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Cc
Confidence 45789999999996 5789999999999999999988532 26788899999999999843 56
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. +|||++++|++...
T Consensus 85 i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred cCHHH---cCCCCEEEEcCCCc
Confidence 77665 69999999998554
No 151
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=4e-06 Score=73.34 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=67.3
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.+++|+++.|+|.+ .+|+.+|..|...|+.|+.++.+. .++.+.+++||+|+.+++. .++
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk----~~l 208 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGK----AGF 208 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCc----ccc
Confidence 457999999999999 999999999999999998887532 3688889999999999972 266
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+.++. +|||+++||+|-..
T Consensus 209 v~~~~---vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 ITPDM---VKPGATVIDVGINQ 227 (279)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 77776 49999999998443
No 152
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=5.8e-06 Score=72.58 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=65.4
Q ss_pred ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.|+++.|||.|. +|+.+|..|...|+.|++++... .++.+..++||+|++++.- .++
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~----p~~ 220 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGV----KHL 220 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCC----ccc
Confidence 4578999999999998 99999999999999999988421 3678889999999998752 246
Q ss_pred ccHHHHccCCCCCEEEEcCCC
Q 026360 110 FDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg 130 (240)
+..+ .+|+|+++||+|-.
T Consensus 221 i~~~---~vk~gavVIDvGin 238 (287)
T PRK14176 221 IKAD---MVKEGAVIFDVGIT 238 (287)
T ss_pred cCHH---HcCCCcEEEEeccc
Confidence 6655 47899999999853
No 153
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.21 E-value=5.4e-06 Score=72.74 Aligned_cols=97 Identities=16% Similarity=0.252 Sum_probs=62.9
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHH-HhcC----ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETG----AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~-~~~g----~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
..+.++++.|+|.|.+|++++..|...| .+|++++|+....+.. ...+ +....+..+.+.++|+|+.++|....
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence 4688999999999999999999999999 6899999975433322 2222 11111345677899999999995432
Q ss_pred hhhcccHHHHccCCCCCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~s 128 (240)
...-...-....++++.+++|+.
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEee
Confidence 11000011123345666666664
No 154
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=2.1e-05 Score=71.40 Aligned_cols=156 Identities=18% Similarity=0.296 Sum_probs=101.1
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-------------------HHhcC-ceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-------------------EKETG-AKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-------------------~~~~g-~~~~~~l~ell~~aDiV 96 (240)
.+|||||+|-||-.+|..+...|++|+++|.++...+. +.+.| .+..++.++ ++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence 79999999999999999999999999999987532111 11222 334445555 4599999
Q ss_pred EEcCCCChhhh-------hcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC--CccEEEeeC---CCCCCCCC
Q 026360 97 VVNTPLTEKTR-------GMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDV---WNPQPAPK 162 (240)
Q Consensus 97 vl~lp~~~~t~-------~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g--~i~ga~lDV---~~~EP~~~ 162 (240)
++|+| ||-+. .+. .+..-+.||+|.++|==|+-.+=.++.++..|.+. .+. ..-|. |.+|-.-+
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 99998 33221 122 23456679999999999998888899988887663 333 22343 23442223
Q ss_pred CCC---CCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccC
Q 026360 163 DHP---WRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHK 206 (240)
Q Consensus 163 ~~~---l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~ 206 (240)
.+. +.+.|+| +||.|.++.+... .-.+.+++|.
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e~a~------~lY~~iv~~~ 202 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAELAA------ALYKTIVEGV 202 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHHHHH------HHHHHheEEE
Confidence 333 3333444 3777777654432 3456677773
No 155
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.20 E-value=1e-05 Score=70.54 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=71.5
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-Hhc---CceecCCHHh-hcCcCCEEEEcCCCCh--h
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET---GAKFEEDLDT-MLPKCDIVVVNTPLTE--K 105 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~---g~~~~~~l~e-ll~~aDiVvl~lp~~~--~ 105 (240)
...+++++|+|.|.+|++++..+...|++|++++|+..+.+.. +.. +.....++++ ...++|+|+.++|..- .
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~ 193 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN 193 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence 3568999999999999999999999999999999875433222 221 2111223433 3457999999999642 1
Q ss_pred hh-hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360 106 TR-GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (240)
Q Consensus 106 t~-~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i 147 (240)
.. ..+. ...++++.+++|+.-.+... .|.++.++.++
T Consensus 194 ~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~ 231 (270)
T TIGR00507 194 IDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGT 231 (270)
T ss_pred CCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence 11 1222 23468888999997655433 35555555433
No 156
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.19 E-value=1.3e-05 Score=66.44 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=65.5
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHH--hcCceec--CC----HHhhcCcCCEEEEcCC
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--ETGAKFE--ED----LDTMLPKCDIVVVNTP 101 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~--~~g~~~~--~~----l~ell~~aDiVvl~lp 101 (240)
+.+++||++.|||-+ .+|+.+|..|...|+.|+.+|.+.... ... ...-... .+ +.+.+++||+|+++++
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~-~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV-FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc-cccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence 347999999999975 689999999999999999997532110 000 0000011 13 7789999999999998
Q ss_pred CChhhhhc-ccHHHHccCCCCCEEEEcCC
Q 026360 102 LTEKTRGM-FDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 102 ~~~~t~~~-i~~~~l~~mk~gailIN~sr 129 (240)
. .++ +..+. .|+|+++||+|-
T Consensus 136 ~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 136 S----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred C----CCCccCHHH---cCCCcEEEEcCC
Confidence 3 355 67665 589999999983
No 157
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.18 E-value=5.1e-06 Score=74.97 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=65.1
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc---------------CceecCCHHhhcCcCCEEEEcCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------------GAKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~---------------g~~~~~~l~ell~~aDiVvl~lp 101 (240)
++|+|||.|.+|..+|..|...| +|..|.+++...+...+. .+...+++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 68999999999999999999988 677777654222212111 12334577788999999999999
Q ss_pred CChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 102 ~~~~t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
+..++..+ ++....+++++.+|++..|=
T Consensus 87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 33344433 34455678888899998864
No 158
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.18 E-value=6.7e-06 Score=73.49 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=63.4
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------------CceecCCHHhhc-CcCCEEEEcCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTML-PKCDIVVVNTP 101 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell-~~aDiVvl~lp 101 (240)
++|+|||.|.||..+|..|...|.+|.+|+|++...+..... ++....++++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 479999999999999999999999999999864322222210 122334666665 58999999999
Q ss_pred CChhhhhcccHHHHc-cCCCCCEEEEcCCCc
Q 026360 102 LTEKTRGMFDKDRIA-KMKKGVLIVNNARGA 131 (240)
Q Consensus 102 ~~~~t~~~i~~~~l~-~mk~gailIN~srg~ 131 (240)
. ..+...+ ++... .+++++.+|.+..|-
T Consensus 81 s-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 T-QQLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred H-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 3 2333333 23333 567777777777664
No 159
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.18 E-value=2.8e-06 Score=74.69 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=73.2
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCce------ecCCHHhhcCcCCEEEEcC--CCC
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK------FEEDLDTMLPKCDIVVVNT--PLT 103 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~------~~~~l~ell~~aDiVvl~l--p~~ 103 (240)
.+...+|.|||.|-+|...|+.+..+|.+|+..|.+.......+. ++.+ ...++++.+.++|+|+-++ |.
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg- 243 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG- 243 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-
Confidence 466778999999999999999999999999999987533333222 2222 1246788999999998764 42
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.+.-.++.++.+++||||+++||++
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 3345678889999999999999996
No 160
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.12 E-value=1.4e-05 Score=73.91 Aligned_cols=91 Identities=16% Similarity=0.355 Sum_probs=64.7
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-HHHhcC-ce--ecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETG-AK--FEEDLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~g-~~--~~~~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
.+.|+++.|||.|.+|+.+++.|...|. ++++++|+..... .+..++ .. ..+++.+.+.++|+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5789999999999999999999999996 6999999754333 233333 22 2345667889999999999743 3
Q ss_pred hcccHHHHccCCCCCEEEEcC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~s 128 (240)
.++..+... .+..++||.+
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 455555432 2335667765
No 161
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=1.2e-05 Score=70.52 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=65.9
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-| .+|+.+|..|...|+.|+.+.... .++.+..++||+|+++++ ..++
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvG----kp~~ 213 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVG----KPNL 213 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecC----cccc
Confidence 457999999999998 899999999999999998776421 367788999999999997 3456
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. .|+|+++||+|-..
T Consensus 214 i~~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 214 ITEDM---VKEGAIVIDIGINR 232 (281)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 77665 58999999999443
No 162
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.10 E-value=6.6e-05 Score=66.82 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=75.0
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce--------------ecCCHHhhcCcCCEEEEcCC
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~~~l~ell~~aDiVvl~lp 101 (240)
.++|+|||.|.||..+|..|.+.|++|.++.++. .+.....|.. ...+. +....+|+|++++|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK 81 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK 81 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec
Confidence 4689999999999999999999999999999864 2333333321 11122 34678999999998
Q ss_pred CChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151 (240)
Q Consensus 102 ~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~ 151 (240)
... +...+ ......+++++.++...-| +-.++.+.+.+...++.++.
T Consensus 82 ~~~-~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 82 TTA-NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred CCC-hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 432 23222 2344456788888887655 55677788888766666543
No 163
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.10 E-value=9.4e-06 Score=67.21 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=63.2
Q ss_pred cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hc----Cc--ee--c---CCHHhhcCcCCEEEE
Q 026360 32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ET----GA--KF--E---EDLDTMLPKCDIVVV 98 (240)
Q Consensus 32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~----g~--~~--~---~~l~ell~~aDiVvl 98 (240)
.+++++++.|+|. |.+|+.+++.|...|.+|++++|+....+... .. +. .. . +++.+.++++|+|+.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 3578999999995 99999999999999999999998753222211 11 11 11 1 223467889999999
Q ss_pred cCCCChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
+.|....+ ... .-...+++.+++|+.+..
T Consensus 104 at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 104 AGAAGVEL--LEK--LAWAPKPLAVAADVNAVP 132 (194)
T ss_pred CCCCCcee--chh--hhcccCceeEEEEccCCC
Confidence 98854431 111 111345577888877554
No 164
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=2.1e-05 Score=69.11 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=66.6
Q ss_pred ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||- ..+|+.+|..|...|+.|+.++.. ..++++.+++||+|+.+++ ..++
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG----~p~~ 214 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVG----KPKL 214 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecC----CCCc
Confidence 45799999999996 578999999999999999988642 1368888999999999997 2357
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+.+ |+|+++||+|...
T Consensus 215 i~~~~i---k~gavVIDvGi~~ 233 (284)
T PRK14190 215 ITADMV---KEGAVVIDVGVNR 233 (284)
T ss_pred CCHHHc---CCCCEEEEeeccc
Confidence 887765 8999999999665
No 165
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=3.3e-05 Score=67.78 Aligned_cols=80 Identities=26% Similarity=0.364 Sum_probs=66.1
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++.+.+++||+|+.+++- .++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~----~~~ 213 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGL----AKF 213 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence 457999999999975 689999999999999999886521 3678889999999999972 356
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. .|+|+++||+|-..
T Consensus 214 i~~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VKKDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred cCHHH---cCCCCEEEEccCcc
Confidence 77665 58999999999654
No 166
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=98.04 E-value=4.4e-05 Score=65.16 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=70.7
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEE-cCCC-------CChhHH----HhcC-------ceecCCHHhhc-Cc
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVK-------MDPQLE----KETG-------AKFEEDLDTML-PK 92 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~~~-------~~~~~~----~~~g-------~~~~~~l~ell-~~ 92 (240)
++.|++++|.|+|++|+.+|+.|..+|++|+++ |.+. .+.+.. ...| .... +.++++ .+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~ 106 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD 106 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence 589999999999999999999999999998844 4311 112211 1122 1112 223332 46
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
||+++-|.+ .+.++.+...+++ +-+|--+....+. ....+.|+++.+.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK--AKIIVEAANGPTT-PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce--eeEEEeCCCCCCC-HHHHHHHHHCCCE
Confidence 899999886 4667777777777 4444444444445 6666888888777
No 167
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.03 E-value=2e-05 Score=70.75 Aligned_cols=88 Identities=26% Similarity=0.287 Sum_probs=61.5
Q ss_pred EEEEccChHHHHHHHHhcc-CCCEEEEEcC-CCCCh-hHHHhcCc------------------eecCCHHhhcCcCCEEE
Q 026360 39 VGTVGCGRIGKLLLQRLKP-FNCNLLYHDR-VKMDP-QLEKETGA------------------KFEEDLDTMLPKCDIVV 97 (240)
Q Consensus 39 vgIIG~G~iG~~~A~~l~~-~G~~V~~~d~-~~~~~-~~~~~~g~------------------~~~~~l~ell~~aDiVv 97 (240)
|||+|+|.||+.+++.+.. -+++|++++. ++... ..+..+|+ ....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6899999999999998764 4688776643 22111 12222232 12346889999999999
Q ss_pred EcCCCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360 98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 98 l~lp~~~~t~~~i~~~~l~~mk~gailIN~sr 129 (240)
.|+| .+.+..+.+.+..++++++|+..-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence 9987 4466778888888988888776443
No 168
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.02 E-value=1.5e-05 Score=70.83 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=67.4
Q ss_pred cCCCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHH-Hhc---Ccee-cCCHHhhcCcCCEEEEcCCCChhh
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KET---GAKF-EEDLDTMLPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~-~~~---g~~~-~~~l~ell~~aDiVvl~lp~~~~t 106 (240)
...++++|||.|.+|+..++.+.. ++. +|.+|+|++.+.+.+ ... +... +.+.+++++++|+|+.++|.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~--- 199 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR--- 199 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence 467899999999999999999864 564 699999986443322 222 2222 468899999999999999854
Q ss_pred hhcccHHHHccCCCCCEEEEcCCCc
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
..++.. .+|||+.++.+|.-.
T Consensus 200 ~Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 200 TPVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred CceeCc----cCCCCCEEEecCCCC
Confidence 355543 269999999998543
No 169
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=98.02 E-value=1.3e-05 Score=59.93 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=58.6
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
+++|+++.|||.|.+|..=++.|...|++|+++++.. +..+. ..+. ...+++.+..+|+|+.+++. ++ ++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~~i~~~-~~~~~~~l~~~~lV~~at~d-~~----~n 74 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEGLIQLI-RREFEEDLDGADLVFAATDD-PE----LN 74 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHTSCEEE-ESS-GGGCTTESEEEE-SS--HH----HH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhhHHHHH-hhhHHHHHhhheEEEecCCC-HH----HH
Confidence 5899999999999999999999999999999999864 11111 1122 23456778899999988763 22 33
Q ss_pred HHHHccCCCCCEEEEcC
Q 026360 112 KDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 112 ~~~l~~mk~gailIN~s 128 (240)
+......+.-.+++|++
T Consensus 75 ~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 75 EAIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhhCCEEEEEC
Confidence 44444555566788875
No 170
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=4.5e-05 Score=66.80 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=66.0
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.++..|...|+.|+.++... .++.+..++||+|+++++- .++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGk----p~~ 214 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGR----PKF 214 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCc
Confidence 457899999999965 689999999999999999887521 3688889999999999972 456
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. .|+|+++||+|-..
T Consensus 215 i~~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 215 IDEEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 77765 58999999998443
No 171
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=2.9e-05 Score=68.11 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=66.1
Q ss_pred ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||- ..+|+.+|..|...|+.|+.++... .++++..++||+|+.+++ ..++
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvG----k~~~ 215 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVG----KPEF 215 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCC----CcCc
Confidence 45799999999996 4689999999999999999887531 367888999999999997 3466
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. .|+|+++||+|-..
T Consensus 216 i~~~~---ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IKADW---ISEGAVLLDAGYNP 234 (284)
T ss_pred cCHHH---cCCCCEEEEecCcc
Confidence 77665 58999999999543
No 172
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.00 E-value=5.3e-05 Score=74.79 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=83.7
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------Hhc-------------CceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KET-------------GAKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~ 92 (240)
++|+|||.|.||..+|..+...|++|+.+|+++...+.. .+. .++...+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 689999999999999999999999999999875432211 001 123345664 4789
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
||+|+=++|-..+.+.-+..+.-+.++++++|...+ +-+....|.+.++. .-+..++.-|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~~g~Hff 452 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKR-PENFCGMHFF 452 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-CccEEEEecC
Confidence 999999999888888888888878899999885544 34566677777753 3344555533
No 173
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=3e-05 Score=68.16 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=66.7
Q ss_pred ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||- ..+|+.+|..|...|+.|+.+.... .++++..++||+|+++++ ..++
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvG----kp~~ 211 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVG----RPHL 211 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcCc
Confidence 45799999999996 5689999999999999999887531 267888999999999997 2367
Q ss_pred ccHHHHccCCCCCEEEEcCCCcc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGAI 132 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~~ 132 (240)
+..+. .|+|+++||+|.-.+
T Consensus 212 i~~~~---vk~GavVIDVGin~~ 231 (287)
T PRK14173 212 ITPEM---VRPGAVVVDVGINRV 231 (287)
T ss_pred cCHHH---cCCCCEEEEccCccc
Confidence 77665 589999999996653
No 174
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=3.1e-05 Score=68.38 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=66.0
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++++.+++||+|+++++- .++
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGk----p~~ 214 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGR----PNL 214 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence 457999999999965 689999999999999998886421 2688889999999999972 356
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. .|+|+++||+|-..
T Consensus 215 i~~~~---ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IGAEM---VKPGAVVVDVGIHR 233 (297)
T ss_pred cCHHH---cCCCCEEEEecccc
Confidence 77665 58999999999555
No 175
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.99 E-value=7e-05 Score=63.49 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=68.9
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEE-EcCCC----------CChhHHHhc-CceecC-----CHHhhc-CcCC
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVK----------MDPQLEKET-GAKFEE-----DLDTML-PKCD 94 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~-~d~~~----------~~~~~~~~~-g~~~~~-----~l~ell-~~aD 94 (240)
++.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+. ...+...+. ++.... +.++++ .+||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 57899999999999999999999999997554 56544 111112222 121110 113332 4799
Q ss_pred EEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 95 iVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+++-|.+ .+.++.+....++ =.+++-.+.+++ .. .-.+.|++..+.
T Consensus 100 VlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~-t~-~a~~~L~~~Gi~ 145 (217)
T cd05211 100 IFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPT-TD-EALRILHERGIV 145 (217)
T ss_pred EEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence 9999987 4577777777776 234555555555 44 456677766655
No 176
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=3.4e-05 Score=67.70 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=65.9
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++++..++||+|+++++ -.++
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~p~~ 212 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVG----VPHF 212 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence 457899999999975 689999999999999999886421 268888999999999997 2456
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. +|+|+++||+|--.
T Consensus 213 i~~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IGADA---VKPGAVVIDVGISR 231 (282)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 77665 58999999999544
No 177
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.97 E-value=3.2e-05 Score=69.40 Aligned_cols=89 Identities=21% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCCeEEEEccChHHHHHHHHhc-cCCC-EEEEEcCCCCChhHHH-----hcCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-----ETGA--KFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~-~~G~-~V~~~d~~~~~~~~~~-----~~g~--~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
..++++|||.|.+|+..+..+. ..+. +|.+|+|++.+.+.+. ..++ ..+++++++++++|+|++++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 5789999999999999887764 4565 5899999865443322 1243 34578899999999999999854
Q ss_pred hhhcccHHHHccCCCCCEEEEcCCC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~srg 130 (240)
..++. +.+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34443 456999999999753
No 178
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=3.8e-05 Score=67.39 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=65.6
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.++... .++++..++||+|+++++ -.++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvG----kp~~ 213 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAG----CVNL 213 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence 457999999999975 689999999999999999887532 368888999999999997 2466
Q ss_pred ccHHHHccCCCCCEEEEcCCC
Q 026360 110 FDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg 130 (240)
+..+. .|+|+++||+|-.
T Consensus 214 i~~~~---vk~GavVIDvGin 231 (282)
T PRK14166 214 LRSDM---VKEGVIVVDVGIN 231 (282)
T ss_pred cCHHH---cCCCCEEEEeccc
Confidence 77765 5899999999843
No 179
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=4e-05 Score=67.24 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=65.0
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.++... .++.+..++||+|+++++ ..++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvG----kp~~ 214 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVG----KPNF 214 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccC----CcCc
Confidence 457999999999965 689999999999999999887531 267788999999999997 2356
Q ss_pred ccHHHHccCCCCCEEEEcCCC
Q 026360 110 FDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg 130 (240)
+..+. .|+|+++||+|-.
T Consensus 215 i~~~~---vk~gavVIDvGin 232 (282)
T PRK14180 215 ITADM---VKEGAVVIDVGIN 232 (282)
T ss_pred CCHHH---cCCCcEEEEeccc
Confidence 77655 5899999999843
No 180
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.96 E-value=1.9e-05 Score=72.62 Aligned_cols=93 Identities=27% Similarity=0.428 Sum_probs=67.8
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-hHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~t~~ 108 (240)
+|.++++.|||+|.||..+|+.|...|. +|++.+|+.... +.+..+|+.+ .+++.+.+.++|+|++++.. ...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa---~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA---PHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC---Ccc
Confidence 4899999999999999999999999995 689999986443 3456677543 35666789999999999752 244
Q ss_pred cccHHHHccC-C--CCCEEEEcC
Q 026360 109 MFDKDRIAKM-K--KGVLIVNNA 128 (240)
Q Consensus 109 ~i~~~~l~~m-k--~gailIN~s 128 (240)
++..+.+... + +.-++||.+
T Consensus 252 ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEec
Confidence 5554443332 2 125788876
No 181
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.96 E-value=4.4e-05 Score=68.55 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=65.7
Q ss_pred CCCeEEEEccChHHHHHHHHhc-cCCC-EEEEEcCCCCChhHH-Hh----cCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLE-KE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~-~~G~-~V~~~d~~~~~~~~~-~~----~g~--~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
..++++|||.|.+|+..++.+. ..+. +|.+|+|++.+.+.+ .. .|+ ...+++++.+++||+|+.++|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 4679999999999999999986 4674 599999986544332 21 243 33578899999999999999854
Q ss_pred hhhcccHHHHccCCCCCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~s 128 (240)
..++..+. +|+|+.+..++
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeC
Confidence 35565544 68999887776
No 182
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.96 E-value=5.9e-05 Score=65.80 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=64.6
Q ss_pred CeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChhHHHhc--CceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~--g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
++|||||+|.||+.+++.+... ++++. ++++........... ++..+++++++-.+.|+|+.|.|.... . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4899999999999999998765 56644 334432211112222 455667888885569999999983221 1 1
Q ss_pred HHHccCCCCCEEEEcCCCcccCH---HHHHHHHHhCCcc
Q 026360 113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA 148 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~~vd~---~aL~~aL~~g~i~ 148 (240)
-....++.|.-++-.+-|.+.|. +.|.++.++++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 22233455555665555655543 4466666665543
No 183
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.94 E-value=8.2e-05 Score=66.09 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=81.7
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP 91 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~ 91 (240)
-++|||||.|.||+.+|..+...|++|..+|+++...+.. .+.| +....++. .+.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 4799999999999999999988779999999974321100 0111 11222333 678
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
+||+|+=++|-+.+.+.-+-++.=...+|+++|-.-. +-+.-.++.+++ +..=+..++--|
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNT--Ssl~it~ia~~~-~rper~iG~HFf 142 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNT--SSLSITELAEAL-KRPERFIGLHFF 142 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeecc--CCCCHHHHHHHh-CCchhEEEEecc
Confidence 9999999999888888877777777789999884333 335667777777 444445666644
No 184
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.93 E-value=4.8e-05 Score=67.10 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=66.1
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.++... .++.+.+++||+|+++++ ..++
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvG----kp~~ 216 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVG----IPNF 216 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence 457999999999965 689999999999999999887532 367888999999999997 2356
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. .|+|+++||+|-..
T Consensus 217 i~~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VKYSW---IKKGAIVIDVGINS 235 (294)
T ss_pred cCHHH---cCCCCEEEEecccc
Confidence 77665 58999999998544
No 185
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.93 E-value=5.7e-05 Score=65.56 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=66.6
Q ss_pred CeEEEEccChHHHHHHHHhccC---CCEEE-EEcCCCCChhHHHhcCceecCCHHhh-cCcCCEEEEcCCCChhhhhccc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPF---NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~---G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~el-l~~aDiVvl~lp~~~~t~~~i~ 111 (240)
.+|||||+|.||+.+++.+..- ++++. ++++.+...+.... .+..+.+++++ ....|+|+=|.. ++. +-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~--~~a---v~ 76 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAG--QQA---IA 76 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCC--HHH---HH
Confidence 6899999999999999998653 35644 45654322222222 25567789997 588999999886 221 11
Q ss_pred HHHHccCCCCCEEEEcCCCcccC---HHHHHHHHHhC
Q 026360 112 KDRIAKMKKGVLIVNNARGAIMD---TQAVVDACSSG 145 (240)
Q Consensus 112 ~~~l~~mk~gailIN~srg~~vd---~~aL~~aL~~g 145 (240)
+--.+-++.|.-++=+|-|.+.| .+.|.++.+++
T Consensus 77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 11223356677777788888887 44555555543
No 186
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.93 E-value=4.9e-05 Score=67.20 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=66.2
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.++.. ..++++.+++||+|+.++.- .++
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk----~~~ 223 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQ----AMM 223 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCC----cCc
Confidence 457999999999975 68999999999999999988752 13688899999999999873 367
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. .|+|+++||+|--.
T Consensus 224 i~~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IKGDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred cCHHH---cCCCCEEEEeeccc
Confidence 77665 58999999998543
No 187
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.93 E-value=5.5e-05 Score=66.67 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=53.0
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-Hhc----C-c--eecCCHHhhcCcCCEEEEcCCCC
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KET----G-A--KFEEDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~----g-~--~~~~~l~ell~~aDiVvl~lp~~ 103 (240)
.+.++++.|+|.|.+|++++..|...|+ +|+++||+..+.+.. ..+ . . ...+++.+.++++|+||.++|..
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 5788999999999999999999999998 699999975443322 221 1 1 11234556778899999999853
No 188
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.92 E-value=0.0001 Score=72.69 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=82.2
Q ss_pred CeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCCChhHHH-----------h-------------cCceecCCHHhhcC
Q 026360 37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLP 91 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~ell~ 91 (240)
++|+|||.|.||..+|..+. ..|++|+.+|+++...+... + ..+...++++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 58999999999999999887 58999999998753211110 0 1123445664 578
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
+||+|+=++|-+.+.+.-+..+.-+.++++++|...+ +-+....|.+.++. .-+..++.-|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~~g~Hff 444 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASR-PENVIGLHYF 444 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCC-cccEEEEecC
Confidence 9999999999888888888778778889998886544 34566677777743 3344566633
No 189
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.92 E-value=5.7e-05 Score=71.23 Aligned_cols=72 Identities=24% Similarity=0.336 Sum_probs=52.3
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCceecCCHHhh--cCcCCEEEEcCCCC
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFEEDLDTM--LPKCDIVVVNTPLT 103 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~~~l~el--l~~aDiVvl~lp~~ 103 (240)
+.++.+++++|+|.|.+|++++..+...|++|++++++..+.+.. ...+.... +++++ +.++|+|++|+|..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCC
Confidence 346789999999999999999999999999999999865333222 22222211 22322 57899999999954
No 190
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=4.7e-05 Score=66.95 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=65.2
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.++..|...|+.|+.++... .++.+.+++||+|++++. -.++
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvG----kp~~ 215 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIG----SPLK 215 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CCCc
Confidence 457999999999975 689999999999999999887421 368888999999999997 2367
Q ss_pred ccHHHHccCCCCCEEEEcCCC
Q 026360 110 FDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg 130 (240)
+..+. .|+|+++||+|-.
T Consensus 216 i~~~~---vk~GavVIDvGin 233 (288)
T PRK14171 216 LTAEY---FNPESIVIDVGIN 233 (288)
T ss_pred cCHHH---cCCCCEEEEeecc
Confidence 77665 5899999999943
No 191
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.91 E-value=4.7e-05 Score=68.65 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=66.1
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++++.+++||+|+.+++ ..++
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvG----kp~~ 287 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVG----QPNM 287 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence 457999999999964 689999999999999999887421 368888999999999997 3466
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. .|+|+++||+|-..
T Consensus 288 i~~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VRGSW---IKPGAVVIDVGINP 306 (364)
T ss_pred CCHHH---cCCCCEEEeccccc
Confidence 77765 58999999999543
No 192
>PRK06046 alanine dehydrogenase; Validated
Probab=97.91 E-value=3.8e-05 Score=68.94 Aligned_cols=88 Identities=26% Similarity=0.431 Sum_probs=64.8
Q ss_pred CCCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHHH-h----cC--ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-E----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~~-~----~g--~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
.-+++||||.|.+|+..++.+.. .+. +|.+||+++...+.+. . .+ +..+++++++++ +|+|++++|..
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~-- 204 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR-- 204 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC--
Confidence 35799999999999999988864 455 4788999764433322 1 24 344678899987 99999999854
Q ss_pred hhhcccHHHHccCCCCCEEEEcCC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~sr 129 (240)
..++..+. +|+|+.+..+|.
T Consensus 205 -~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 -KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred -CcEecHHH---cCCCCEEEecCC
Confidence 35666554 589999888884
No 193
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.00015 Score=64.94 Aligned_cols=158 Identities=12% Similarity=0.155 Sum_probs=115.9
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh---cC--ceecCCHHhhc---CcCCEEEEcCCCChhhhh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---TG--AKFEEDLDTML---PKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~---~g--~~~~~~l~ell---~~aDiVvl~lp~~~~t~~ 108 (240)
..||+||++.||+.++......|+.|.+|+|+..+.+.+.. .| +....++++++ +.-..|++.+........
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 46899999999999999999999999999998655443321 12 23345777764 556677777754444444
Q ss_pred cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 026360 109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVI 188 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~ 188 (240)
+| ++....|.+|-+||+-+...--|+..-.+.|.+..|.+.+.-|...|.-....|-+ +-|.+.+++..
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl----------MpGg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL----------MPGGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc----------CCCCChHHHHH
Confidence 44 46778899999999999999999999999999999999999998887644333321 22677888888
Q ss_pred hhhhHHHHHHHHHHH-ccCCC
Q 026360 189 VHFFPVFMRLFTSFL-SHKSN 208 (240)
Q Consensus 189 ~~~~~~~~~~~~~~~-~g~~~ 208 (240)
+.. .+ ..|.+-. .|+|+
T Consensus 156 ik~--if-q~iaakv~~~epC 173 (487)
T KOG2653|consen 156 IKD--IF-QKIAAKVSDGEPC 173 (487)
T ss_pred HHH--HH-HHHHHHhcCCCCC
Confidence 766 43 3444443 44554
No 194
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=5.7e-05 Score=66.24 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=65.8
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.++... .++++..++||+|+++++- .++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~ 213 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AEL 213 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence 457999999999965 689999999999999999886521 3678889999999999972 467
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. .|+|+++||+|-..
T Consensus 214 i~~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VKGAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred cCHHH---cCCCCEEEEeecee
Confidence 77665 58999999998544
No 195
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.90 E-value=0.00012 Score=72.31 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=82.9
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 92 (240)
++|+|||.|.||..+|..+...|++|+.+|+++...+... +. .+....+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 5899999999999999999999999999998754322110 00 123344553 4689
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
||+|+=++|-+.+.+.-+..+.-+.++|+++|-..+ +-++..+|...++. .=+..++--|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~~-p~r~ig~Hff 452 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALKR-PENFCGMHFF 452 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcCC-cccEEEEecC
Confidence 999999999888888878778878899999885544 44666777777753 3333455533
No 196
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=6e-05 Score=66.21 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=65.6
Q ss_pred ccccCCCeEEEEcc-ChHHHHHHHHhcc--CCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~--~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
+.++.||++.|||- +.+|+.+|..|.. .++.|+.+... ..++++.+++||+|+++++- .
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGk----p 214 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGV----A 214 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCC----c
Confidence 45789999999996 5789999999987 78999888752 13688889999999999972 3
Q ss_pred hcccHHHHccCCCCCEEEEcCCCc
Q 026360 108 GMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~srg~ 131 (240)
+++..+. +|+|+++||+|...
T Consensus 215 ~~i~~~~---ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVTADM---VKPGAAVLDVGVSR 235 (284)
T ss_pred CccCHHH---cCCCCEEEEccccc
Confidence 5677665 58999999999655
No 197
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.90 E-value=7.4e-05 Score=66.89 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=71.3
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhH-HH--h-----cC----ceecCCHHhhcCcCCEEEEcC
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EK--E-----TG----AKFEEDLDTMLPKCDIVVVNT 100 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~-~~--~-----~g----~~~~~~l~ell~~aDiVvl~l 100 (240)
+..++|+|||.|.+|..+|..+...| .++..+|.+....+. +. . .+ +....+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45789999999999999999988777 689999986532211 11 0 11 12224666 679999999998
Q ss_pred --CCChh-h--------hhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHHHH--hCCccEEE
Q 026360 101 --PLTEK-T--------RGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS 151 (240)
Q Consensus 101 --p~~~~-t--------~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~aL~--~g~i~ga~ 151 (240)
|..+. + ..++. .+.+....|.+++++++...=+-...+.+.-. ..++.|.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 43320 0 01110 12334456888999987544333334444322 35666555
No 198
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.89 E-value=0.00011 Score=68.38 Aligned_cols=111 Identities=17% Similarity=0.271 Sum_probs=72.6
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC--------CChhHH------------------HhcCceecC
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQLE------------------KETGAKFEE 84 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~--------~~~~~~------------------~~~g~~~~~ 84 (240)
+.+|.|++|.|.|+|++|...|+.|..+|++|++++.+. .+.+.. ...++...
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i- 301 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV- 301 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-
Confidence 457999999999999999999999999999998844311 111100 01133333
Q ss_pred CHHhhc-CcCCEEEEcCCCChhhhhcccHHHHccCCC-CCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 85 ~l~ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~-gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+.++++ ..||+++-|. +.+.|+.+...+++. +..+|--+-..+...++.. .|.++.|.
T Consensus 302 ~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~-~L~~rgI~ 361 (444)
T PRK14031 302 EGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANMPSTPEAIK-VFQDAKIL 361 (444)
T ss_pred CCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH-HHHHCCcE
Confidence 334443 4699888776 478888888888864 4545555554477777664 44444444
No 199
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.89 E-value=4.3e-05 Score=64.51 Aligned_cols=97 Identities=29% Similarity=0.461 Sum_probs=67.0
Q ss_pred CeEEEEccChHHHHHHHHhccC--CCE-EEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~--G~~-V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
++|||||+|.||+.+.+.++.- .++ +.+||++..+.. .....+.....+++|++++.|+++=|.. .+..+..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~--- 76 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREY--- 76 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHH---
Confidence 4799999999999999999853 455 788998764433 2334555556789999999999988875 1222222
Q ss_pred HHHccCCCCCEEEEcCCCcccCHHHH
Q 026360 113 DRIAKMKKGVLIVNNARGAIMDTQAV 138 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~~vd~~aL 138 (240)
..+.++.|.=+|-+|-|.+.|+.-+
T Consensus 77 -~~~~L~~g~d~iV~SVGALad~~l~ 101 (255)
T COG1712 77 -VPKILKAGIDVIVMSVGALADEGLR 101 (255)
T ss_pred -hHHHHhcCCCEEEEechhccChHHH
Confidence 2233566665666777888866543
No 200
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.89 E-value=4.2e-05 Score=69.94 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=71.4
Q ss_pred CeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcC---c-------eecCCHHhhcCcCCEEEEcCCCChh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETG---A-------KFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g---~-------~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
++|.|||+|.||+.+|..|.+.| .+|++.||+..+...+.... + .....+.+++++.|+|+.++|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~-- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF-- 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence 68999999999999999999988 89999999865544443321 1 22346678999999999999833
Q ss_pred hhhcccHHHH-ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 106 TRGMFDKDRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 106 t~~~i~~~~l-~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
++...+ +.++.|.-.++++-.+-.- -++-+..++.++.
T Consensus 80 ----~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit 118 (389)
T COG1748 80 ----VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGIT 118 (389)
T ss_pred ----hhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeE
Confidence 222333 3456777777877554332 4444444444433
No 201
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.89 E-value=5.4e-05 Score=67.93 Aligned_cols=80 Identities=15% Similarity=0.278 Sum_probs=65.8
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++++..++||+|+.+++ ..++
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvG----kp~~ 270 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAG----IPNL 270 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence 457999999999975 689999999999999998887532 267888999999999997 2466
Q ss_pred ccHHHHccCCCCCEEEEcCCCc
Q 026360 110 FDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~ 131 (240)
+..+. +|+|+++||+|--.
T Consensus 271 v~~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VRGSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred cCHHH---cCCCCEEEEccccc
Confidence 77665 58999999999543
No 202
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=6.7e-05 Score=65.95 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=65.0
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccC----CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
+.++.||++.|||-+ .+|+.+|..|... ++.|+.+.... .++++.+++||+|+++++-
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~--- 210 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGV--- 210 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence 457999999999975 6899999999887 78898876421 3688889999999999972
Q ss_pred hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
.+++..+. .|+|+++||+|-..
T Consensus 211 -p~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 211 -PLFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred -cCccCHHH---cCCCCEEEEecccc
Confidence 35677665 58999999999544
No 203
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.87 E-value=0.00013 Score=71.92 Aligned_cols=115 Identities=10% Similarity=0.016 Sum_probs=83.6
Q ss_pred CeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcC
Q 026360 37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLP 91 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~ 91 (240)
++|+|||.|.||..+|..+. ..|++|+.+|+++...+... +. .+...+++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 78999999998753221110 00 12334455 4578
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
+||+|+=++|-+.+.+.-+..+.-+.++|+++|...+ +-+....|.+.++. .-+.+++.-|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~ig~Hff 449 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNT--SSLPIGQIAAAAAR-PEQVIGLHYF 449 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHHhcCc-ccceEEEecC
Confidence 9999999999888888888778778899999986544 44667777777743 3344566643
No 204
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.87 E-value=0.0001 Score=73.06 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=84.0
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK 92 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 92 (240)
++|+|||.|.||..+|..+...|++|+.+|+++...+... +. .+....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999999999999998754322100 00 123345665 5689
Q ss_pred CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155 (240)
Q Consensus 93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~ 155 (240)
||+|+=++|-+.+.+.-+..+.-+.++++++|... -+-++..+|.+.++. .-+..++.-|
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~ig~Hff 474 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSR-PEKVIGMHYF 474 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-ccceEEEecc
Confidence 99999999988888888888887889999988543 344667777777754 3344566644
No 205
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.86 E-value=6.3e-05 Score=67.81 Aligned_cols=98 Identities=30% Similarity=0.414 Sum_probs=69.6
Q ss_pred ccccCCCeEEEEcc-ChHHHHHHHHhcc-CC-CEEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t 106 (240)
+.+++|+++.|+|. |.||+.+++.|.. .| .+++.++|+...... ..+++.....++++.+.++|+|+.++...
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~--- 226 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP--- 226 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---
Confidence 34689999999998 8999999999974 56 478899986533332 22232112346889999999998776432
Q ss_pred hh-cccHHHHccCCCCCEEEEcCCCcccC
Q 026360 107 RG-MFDKDRIAKMKKGVLIVNNARGAIMD 134 (240)
Q Consensus 107 ~~-~i~~~~l~~mk~gailIN~srg~~vd 134 (240)
.. .++.+. ++++.++||+|+..=||
T Consensus 227 ~~~~I~~~~---l~~~~~viDiAvPRDVd 252 (340)
T PRK14982 227 KGVEIDPET---LKKPCLMIDGGYPKNLD 252 (340)
T ss_pred cCCcCCHHH---hCCCeEEEEecCCCCCC
Confidence 23 366654 48999999999776444
No 206
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.85 E-value=0.0003 Score=60.91 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=72.4
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEE-cC-------CCCChhHH------H-hc------------CceecC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DR-------VKMDPQLE------K-ET------------GAKFEE 84 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~-------~~~~~~~~------~-~~------------g~~~~~ 84 (240)
.+++|+++.|.|+|++|+.+|+.|...|++|+++ |. ...+.+.. + .. +.+..
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~- 112 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF- 112 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-
Confidence 4689999999999999999999999999998844 42 11111111 0 11 13333
Q ss_pred CHHhh-cCcCCEEEEcCCCChhhhhcccHHHHccCC-CCC-EEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 85 DLDTM-LPKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 85 ~l~el-l~~aDiVvl~lp~~~~t~~~i~~~~l~~mk-~ga-ilIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+.+++ -.+||+++-|. +.+.|+.+...+++ +++ +|+-.+.+++ .. +-.+.|.++.+.
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~ 172 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVL 172 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence 33333 35699998886 47888888888774 234 5555555655 44 455778777776
No 207
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.85 E-value=6.2e-05 Score=62.85 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=46.7
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l 115 (240)
++++|||- |.||+.++..+++.|+.|. +++||+|++|+|.. .+. +.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~-----~~i 48 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AAL-----NYI 48 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHH-----HHH
Confidence 47999997 9999999999999999985 36899999999932 222 223
Q ss_pred ccCCCCCEEEEcCCCcc
Q 026360 116 AKMKKGVLIVNNARGAI 132 (240)
Q Consensus 116 ~~mk~gailIN~srg~~ 132 (240)
+.+. .+++|++.-+-
T Consensus 49 ~~~~--~~v~Dv~SvK~ 63 (197)
T PRK06444 49 ESYD--NNFVEISSVKW 63 (197)
T ss_pred HHhC--CeEEeccccCH
Confidence 3333 37999986543
No 208
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.83 E-value=6.5e-05 Score=67.53 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=63.3
Q ss_pred CCCeEEEEccChHHHHHHHHhcc-CC-CEEEEEcCCCCChhHHHh-----cCce--ecCCHHhhcCcCCEEEEcCCCChh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE-----TGAK--FEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~~~~-----~g~~--~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
..++++|||.|.+|+..+..+.. .+ -+|.+|+|++.+.+.+.+ .|+. ..++++++++++|+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 45899999999999998888874 45 469999998654443322 2443 3578899999999999999853
Q ss_pred hhhcccHHHHccCCCCCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~s 128 (240)
..++..+. +++|+.+..++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 34555443 57887766654
No 209
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.83 E-value=3.3e-05 Score=61.04 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=71.6
Q ss_pred EEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--------------CCHHhhcCcCCEEEEcCCCCh
Q 026360 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------EDLDTMLPKCDIVVVNTPLTE 104 (240)
Q Consensus 39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--------------~~l~ell~~aDiVvl~lp~~~ 104 (240)
|+|+|.|.||..+|..|+..|.+|..+++.+ ..+...+.|+... .+..+.....|+|++|+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~- 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY- 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence 6899999999999999999999999999865 3444444443221 11124567899999999743
Q ss_pred hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~ 151 (240)
++...+. .....+.+++.++-.--| +-.++.+.+.+...++.++.
T Consensus 79 ~~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 79 QLEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp GHHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred chHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 3334333 344555677677766555 55566777676555565443
No 210
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.82 E-value=8.2e-05 Score=65.39 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=64.5
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhcc----CCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
+.++.||++.|||-+ .+|+.++..|.. .++.|+.++... .++.+.+++||+|+.+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG---- 213 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIG---- 213 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC----
Confidence 457999999999965 689999999988 788998877431 368889999999999996
Q ss_pred hhhcccHHHHccCCCCCEEEEcCC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~sr 129 (240)
..+++..+.+ |+|+++||+|-
T Consensus 214 ~p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 214 RPRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred CCCcCCHHHc---CCCCEEEEeee
Confidence 3466777665 99999999983
No 211
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.81 E-value=7.1e-05 Score=62.63 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=68.7
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC---CCChh-------------------HHHhc--Cce--e--
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV---KMDPQ-------------------LEKET--GAK--F-- 82 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~---~~~~~-------------------~~~~~--g~~--~-- 82 (240)
..|..++|+|+|+|.+|..+|..|...|. +++.+|++ ..... ..... .+. .
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 46899999999999999999999999998 69999987 21100 00010 011 1
Q ss_pred ----cCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 83 ----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 83 ----~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.++++++++++|+|+.+ ..+.+++..+..+....+++..++...+
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g 145 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG 145 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 02345678899999988 5788889888888888787766666433
No 212
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.80 E-value=9.1e-05 Score=65.91 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=71.9
Q ss_pred CeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-HHHh---------c--CceecCCHHhhcCcCCEEEEcCCCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE---------T--GAKFEEDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~---------~--g~~~~~~l~ell~~aDiVvl~lp~~ 103 (240)
++|+|||.|.||..+|..+...|. +|+.+|....... ...+ . .+....+.++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988775 8999998543221 1110 0 1223356776 78999999998732
Q ss_pred hh-----------hhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHH--HHhCCccEEE--ee
Q 026360 104 EK-----------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS--GD 153 (240)
Q Consensus 104 ~~-----------t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~a--L~~g~i~ga~--lD 153 (240)
.. +..++. .+.+....+++++|+++..-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 11 111221 122333457899999986543334444444 4455666665 56
No 213
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.80 E-value=9.7e-05 Score=66.46 Aligned_cols=90 Identities=7% Similarity=0.134 Sum_probs=60.3
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
++.|+++.|||.|.||+.+|+.|...|. +|++.+|+....+. ... .. ..-+...++|+|+.+...|......+.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~-~~~---~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~ 245 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPY-RTV---VR-EELSFQDPYDVIFFGSSESAYAFPHLS 245 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccch-hhh---hh-hhhhcccCCCEEEEcCCcCCCCCceee
Confidence 5899999999999999999999999996 59999997632111 100 00 111446789999987433333345556
Q ss_pred HHHHccCCCCCEEEEcC
Q 026360 112 KDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 112 ~~~l~~mk~gailIN~s 128 (240)
.+.++..++ .++||.+
T Consensus 246 ~~~~~~~~~-r~~iDLA 261 (338)
T PRK00676 246 WESLADIPD-RIVFDFN 261 (338)
T ss_pred HHHHhhccC-cEEEEec
Confidence 555554332 3788876
No 214
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.00011 Score=65.01 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=64.4
Q ss_pred ccccCCCeEEEEcc-ChHHHHHHHHhccC----CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
+.++.||++.|||- ..+|+.+|..|... ++.|+.+.... .++++.+++||+|+.++.
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvG---- 217 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAG---- 217 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecC----
Confidence 46799999999996 57899999999876 68898876421 368888999999999986
Q ss_pred hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
..+++..+. .|+|+++||+|...
T Consensus 218 kp~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CcCccCHHH---cCCCCEEEecCCCc
Confidence 235677665 58999999999544
No 215
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.78 E-value=3.9e-05 Score=58.08 Aligned_cols=65 Identities=26% Similarity=0.428 Sum_probs=51.2
Q ss_pred eEEEEccChHHHHHHHHhccC--CCEEE-EEcCCCCChhH-HHhcCceecCCHHhhcC--cCCEEEEcCCC
Q 026360 38 TVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLP--KCDIVVVNTPL 102 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~--G~~V~-~~d~~~~~~~~-~~~~g~~~~~~l~ell~--~aDiVvl~lp~ 102 (240)
++||||+|.+|+.....+... +.++. ++|+++...+. .+..|+..+++++++++ +.|+|++++|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 799999999999998877765 55654 67876543333 44578888889999998 79999999994
No 216
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.78 E-value=9.5e-05 Score=66.12 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=66.4
Q ss_pred CCCeEEEEccChHHHHHHHHhcc-CC-CEEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t 106 (240)
.-++++|||.|..|+..++.+.. +. -+|.+|+|++.+.+.+. ..+ +..+++.++++++||+|+.++|.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~--- 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR--- 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence 46799999999999999887764 23 36999999875544222 223 334678999999999999998743
Q ss_pred hhcccHHHHccCCCCCEEEEcCC
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~sr 129 (240)
..++..+. +|||+.++.+|.
T Consensus 204 ~P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 204 EPLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred CceeCHHH---cCCCcEEEecCC
Confidence 46666554 689999999974
No 217
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=9.9e-05 Score=65.23 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=63.8
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhcc----CCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
+.++.||++.|||-+ .+|+.+|..|.. .|+.|....... .++++.+++||+|+.+++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~--- 216 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGK--- 216 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCc---
Confidence 457999999999975 689999999876 578888776432 2678889999999999962
Q ss_pred hhhcccHHHHccCCCCCEEEEcCCC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~srg 130 (240)
.+++..+.+ |+|+++||+|-.
T Consensus 217 -~~li~~~~v---k~GavVIDVgi~ 237 (295)
T PRK14174 217 -ARFITADMV---KPGAVVIDVGIN 237 (295)
T ss_pred -cCccCHHHc---CCCCEEEEeecc
Confidence 267887776 999999999843
No 218
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.78 E-value=8.1e-05 Score=64.93 Aligned_cols=116 Identities=27% Similarity=0.336 Sum_probs=83.0
Q ss_pred ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360 31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~ 109 (240)
+.+|+|+++.|||-++ +|+.++..|...++.|++++... .++.+..++||+|++++. -.++
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG----~p~~ 212 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVG----KPHF 212 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecC----Cccc
Confidence 4578999999999875 69999999999999999988632 377788999999999986 2356
Q ss_pred ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 026360 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVI 188 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~ 188 (240)
+..+. .|+|+++|++|--.+-+ +++ .=||-.++.. ...-.+||=-||.-.=+...
T Consensus 213 i~~d~---vk~gavVIDVGinrv~~----------~kl---~GDVdf~~v~--------~~a~~iTPVPGGVGPmTvam 267 (283)
T COG0190 213 IKADM---VKPGAVVIDVGINRVND----------GKL---VGDVDFDSVK--------EKASAITPVPGGVGPMTVAM 267 (283)
T ss_pred ccccc---ccCCCEEEecCCccccC----------Cce---EeeccHHHHH--------HhhcccCCCCCccCHHHHHH
Confidence 66443 69999999999554333 333 3465433321 12235788777776554433
No 219
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=0.00013 Score=64.43 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=64.2
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccC----CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
+.++.||++.|||-+ .+|+.+|..|... ++.|+.+.... .++.+.+++||+|+++++-
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGk--- 214 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQ--- 214 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence 457999999999965 6899999999876 68888876421 3788889999999999972
Q ss_pred hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
.+++..+. .|+|+++||+|-..
T Consensus 215 -p~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 215 -PEFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred -cCccCHHH---cCCCCEEEEecCcc
Confidence 35677655 58999999998543
No 220
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.77 E-value=0.0003 Score=65.49 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=75.1
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEE--------EcCCCCChhHH---H---------------hc-Cceec
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY--------HDRVKMDPQLE---K---------------ET-GAKFE 83 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~--------~d~~~~~~~~~---~---------------~~-g~~~~ 83 (240)
+.+|.|++|.|-|+|++|..+|+.|...|++|++ ||++..+.+.. . .+ +.+..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 3478999999999999999999999999999998 77655443321 0 11 33333
Q ss_pred CCHHhhc-CcCCEEEEcCCCChhhhhcccHHHHccCC-CCC-EEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 84 ~~l~ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~mk-~ga-ilIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+.++++ ..||+++-|. +.+.|+.+....+. .++ +|+-.+.+ +++.++- +.|.++.|.
T Consensus 303 -~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~ 362 (445)
T PRK14030 303 -AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL 362 (445)
T ss_pred -CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence 233444 4589888776 57888887777772 234 55555556 6666544 677777666
No 221
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.77 E-value=0.00015 Score=62.55 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=75.3
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEE--------cCCCCChhHHH----hcCc-------------eecCCHH
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLEK----ETGA-------------KFEEDLD 87 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~--------d~~~~~~~~~~----~~g~-------------~~~~~l~ 87 (240)
+++|+++.|-|+|++|..+|+.|...|++|+++ |+...+.+... +.+. +.. +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 107 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PND 107 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccc
Confidence 589999999999999999999999999998776 54432222221 1222 111 221
Q ss_pred -hhc-CcCCEEEEcCCCChhhhhcccHHHHc-cCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 88 -TML-PKCDIVVVNTPLTEKTRGMFDKDRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 88 -ell-~~aDiVvl~lp~~~~t~~~i~~~~l~-~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+++ .+||+++.|.- .+.|+.+... .+++++-+|--+-...+..++.. .|++..|.
T Consensus 108 ~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 108 DEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL 165 (244)
T ss_dssp CHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred cccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence 455 57999999963 5778888888 88877766666666666666665 88887776
No 222
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.75 E-value=0.00031 Score=62.86 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=67.6
Q ss_pred CeEEEEccChHHHHHHHHhccC-CCEEEE-EcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~~-~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~ 114 (240)
.+|||||+|+||+.+++.+... ++++.+ +|+++. .......++....+.++++.+.|+|++|+|.... -...
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~ 77 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQ 77 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHH
Confidence 6899999999999999998765 788765 677531 1222234544445777888999999999985422 1233
Q ss_pred HccCCCCCEEEEcCCC--cccC-HHHHHHHHHh-CCccE
Q 026360 115 IAKMKKGVLIVNNARG--AIMD-TQAVVDACSS-GHIAG 149 (240)
Q Consensus 115 l~~mk~gailIN~srg--~~vd-~~aL~~aL~~-g~i~g 149 (240)
...++.|.-+|+..-- .+.+ .+.+-++.++ |++.-
T Consensus 78 ~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsv 116 (324)
T TIGR01921 78 APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSV 116 (324)
T ss_pred HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 3445666667776432 1122 3344455554 56653
No 223
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.75 E-value=0.00011 Score=67.28 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCCeEEEEccChHHHHHHHHhcc-CC--CEEEEEcCCCCChhHH-H----hc-C---ceecCCHHhhcCcCCEEEEcCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP-FN--CNLLYHDRVKMDPQLE-K----ET-G---AKFEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~-~G--~~V~~~d~~~~~~~~~-~----~~-g---~~~~~~l~ell~~aDiVvl~lp~ 102 (240)
.-++++|||.|..|+..++.+.. +. -+|.+|+|++.+.+.+ + .. + +..+++.++++++||+|+.+++.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 35799999999999999988765 32 3699999987543321 1 12 2 44567999999999999999975
Q ss_pred Ch---hhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 103 TE---KTRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 103 ~~---~t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
++ .+..++..+. +|||+.++.++.-+
T Consensus 234 ~~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 234 ETGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 43 3346676554 58999887776543
No 224
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.74 E-value=9.1e-05 Score=62.08 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=58.8
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-hHHHhcC-ceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETG-AKFE--EDLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g-~~~~--~~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
.+|.|+++.|||.|.+|...++.|...|++|+++++..... ......+ +... .-.++.+..+|+|+.++...+.+.
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~ 85 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNE 85 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHH
Confidence 46899999999999999999999999999999998754221 1111112 2211 111345788999988887443333
Q ss_pred hcccHHHHccCCCCCEEEEcC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~s 128 (240)
.+ . ...+.+ .++|++
T Consensus 86 ~i-~----~~a~~~-~lvn~~ 100 (202)
T PRK06718 86 QV-K----EDLPEN-ALFNVI 100 (202)
T ss_pred HH-H----HHHHhC-CcEEEC
Confidence 22 2 222333 477774
No 225
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.73 E-value=0.00017 Score=63.77 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=63.8
Q ss_pred ccccCCCeEEEEccC-hHHHHHHHHhccC----CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
+.++.||++.|||-+ .+|+.+|..|... ++.|+.+.... .++++..++||+|++++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvG---- 213 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAG---- 213 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----
Confidence 457999999999965 6899999999865 78898876421 367888999999999886
Q ss_pred hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
-.+++..+. +|+|+++||+|-..
T Consensus 214 kp~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 214 VPELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CcCccCHHH---cCCCCEEEEccccc
Confidence 235777655 58999999999544
No 226
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.73 E-value=0.00013 Score=55.87 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=54.0
Q ss_pred eEEEEc-cChHHHHHHHHhccC-CCEEEEE-cCCCCChhHHH-hcC-ce-e-cCCH--Hhh-cCcCCEEEEcCCCChhhh
Q 026360 38 TVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEK-ETG-AK-F-EEDL--DTM-LPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 38 ~vgIIG-~G~iG~~~A~~l~~~-G~~V~~~-d~~~~~~~~~~-~~g-~~-~-~~~l--~el-l~~aDiVvl~lp~~~~t~ 107 (240)
++||+| .|.+|+.++..+... ++++.++ ++......... ..+ .. . ..+. +++ ..++|+|++|+|......
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 589999 599999999998874 7887666 43321111111 111 10 0 0111 111 248999999999653332
Q ss_pred hcccHHHHccCCCCCEEEEcC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~s 128 (240)
.+. .....+++|.++|+++
T Consensus 81 -~~~-~~~~~~~~g~~viD~s 99 (122)
T smart00859 81 -IAP-LLPKAAEAGVKVIDLS 99 (122)
T ss_pred -HHH-HHHhhhcCCCEEEECC
Confidence 221 2345579999999998
No 227
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.72 E-value=0.00018 Score=62.51 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=48.2
Q ss_pred CeEEEEcc-ChHHHHHHHHhcc-CCCEEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~-~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp 101 (240)
.+|+|+|+ |.||+.+++.+.. -++++. ++|+.+.........++....+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 58999998 9999999998875 478865 47765433222233455556789999989999997776
No 228
>PLN02477 glutamate dehydrogenase
Probab=97.70 E-value=0.00044 Score=63.91 Aligned_cols=110 Identities=18% Similarity=0.295 Sum_probs=73.7
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEE-cCC-------CCChhHHHh----c-------CceecCCHHhhcC
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEKE----T-------GAKFEEDLDTMLP 91 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~~-------~~~~~~~~~----~-------g~~~~~~l~ell~ 91 (240)
+.+++|++|+|.|+|++|+.+|+.|...|++|+++ |.+ ..+.+...+ . +.+..++-+-+..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 34789999999999999999999999999998844 443 112221111 0 1222322222345
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+||+++-|. ..+.|+.+...+++ =.+|+-.+.+++ +.+ --+.|+++.|.
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 799988876 36778888888775 356677777776 444 45888887776
No 229
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.70 E-value=0.0001 Score=63.99 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=73.5
Q ss_pred EEEEcc-ChHHHHHHHHhccCC----CEEEEEcCCCCChhHHH--------h---cCceecCCHHhhcCcCCEEEEcCCC
Q 026360 39 VGTVGC-GRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEK--------E---TGAKFEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 39 vgIIG~-G~iG~~~A~~l~~~G----~~V~~~d~~~~~~~~~~--------~---~g~~~~~~l~ell~~aDiVvl~lp~ 102 (240)
|+|||. |.+|..+|..+...| .+|..+|.++...+... . ..+...+++++.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999988777 68999998653322111 0 1223345667889999999996522
Q ss_pred C--h---------hhhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHH--HHhCCccEEE-eeCC
Q 026360 103 T--E---------KTRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS-GDVW 155 (240)
Q Consensus 103 ~--~---------~t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~a--L~~g~i~ga~-lDV~ 155 (240)
. + .+..++. .+.+....|+++++|++..-=+-...+.+. +...++.|.+ +|..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 1 0 1111111 123344558999999963322333344444 4567888888 7753
No 230
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.70 E-value=8.2e-05 Score=66.45 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
-++++|||.|..|+..++.+.. ++. +|.+|+|++...+.+. ..+ +..+++.++++++||+|+.++|.+..+
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 4699999999999999988764 554 5999999864333221 123 345679999999999999999855422
Q ss_pred hcccHHHHccCCCCCEEEEcCCC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~srg 130 (240)
.++..+ .++||+.++.+|..
T Consensus 207 P~~~~~---~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 207 PVFDAE---WLKPGTHINAIGSY 226 (313)
T ss_dssp ESB-GG---GS-TT-EEEE-S-S
T ss_pred ccccHH---HcCCCcEEEEecCC
Confidence 566654 47899999999854
No 231
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=97.66 E-value=0.00049 Score=55.41 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=68.5
Q ss_pred CCCeEEEEc--cChHHHHHHHHhccCCCEEEEEcCCCC--Ch--hHH-------HhcC--ceecCCHHhhcCcCCEEEEc
Q 026360 35 EGKTVGTVG--CGRIGKLLLQRLKPFNCNLLYHDRVKM--DP--QLE-------KETG--AKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 35 ~g~~vgIIG--~G~iG~~~A~~l~~~G~~V~~~d~~~~--~~--~~~-------~~~g--~~~~~~l~ell~~aDiVvl~ 99 (240)
.|++|++|| .+++.++++..+..+|+++.++.|... +. +.. ...| +...+++++.++++|+|...
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 489999999999999999999988652 22 111 1223 35568999999999999887
Q ss_pred CCC----Chh-------hhhcccHHHHccCCCCCEEEEcC
Q 026360 100 TPL----TEK-------TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 100 lp~----~~~-------t~~~i~~~~l~~mk~gailIN~s 128 (240)
.-. .+. ....++.+.++.+|++++|..+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 643 111 12456888999999999988875
No 232
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.66 E-value=0.00052 Score=52.42 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=67.0
Q ss_pred CeEEEEc----cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360 37 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 37 ~~vgIIG----~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
|+|+||| -+..|..+.+.|++.|++|+.+++..... .|...+.+++|.-...|++++++|. +.+..++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH-
Confidence 6899999 68999999999999999999999865221 3666677898855889999999982 22333332
Q ss_pred HHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+ +..+..+.+++..+ -.++++.+.+++..+.
T Consensus 74 ~-~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 E-AAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp H-HHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred H-HHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 2 33346778888887 6778888888887776
No 233
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.65 E-value=0.00039 Score=64.79 Aligned_cols=110 Identities=16% Similarity=0.297 Sum_probs=72.2
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEE-cCC-------CCChhHHHh---------------cCceecCCHH
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEKE---------------TGAKFEEDLD 87 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~~-------~~~~~~~~~---------------~g~~~~~~l~ 87 (240)
+.++.|++|+|.|+|++|+.+|+.|..+|++|+++ |.+ ..+.+...+ .+.... +.+
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~ 305 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGG 305 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCc
Confidence 34689999999999999999999999999999887 522 111111100 022222 334
Q ss_pred hhcC-cCCEEEEcCCCChhhhhcccHHHHccCC-CC-CEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 88 TMLP-KCDIVVVNTPLTEKTRGMFDKDRIAKMK-KG-VLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 88 ell~-~aDiVvl~lp~~~~t~~~i~~~~l~~mk-~g-ailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+++. +||+++-|.. .+.|+.+....++ ++ .+|+-.+.+++ +.+ -.+.|.++.|.
T Consensus 306 ~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~ 362 (445)
T PRK09414 306 SPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL 362 (445)
T ss_pred cccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence 4443 6999998886 5667777666663 23 45666666766 444 55777777766
No 234
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.00039 Score=63.32 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=92.4
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH----------------Hh-c--C-ceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE----------------KE-T--G-AKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~----------------~~-~--g-~~~~~~l~ell~~aDiV 96 (240)
++|.|+|.|-+|-..+..+..+|++|+++|..+.+.+.. ++ . | ....++.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 589999999999999999999999999999875332211 11 1 1 34556888999999999
Q ss_pred EEcCCCChhhhhcc--------cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC-CCCCCCCCCCCC-
Q 026360 97 VVNTPLTEKTRGMF--------DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAPKDHPW- 166 (240)
Q Consensus 97 vl~lp~~~~t~~~i--------~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV-~~~EP~~~~~~l- 166 (240)
++++|-.+...+-+ -++..+.++..+++|+=|+-.+=..+.+.+-+.+..-.. -.+| +.+|-+.+.+-+
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 99998433222222 245566677779999999988888888877766554322 2222 455555544433
Q ss_pred --CCCCCeEE
Q 026360 167 --RYMPNQAM 174 (240)
Q Consensus 167 --~~~~nv~~ 174 (240)
+..+++++
T Consensus 160 D~~~PdRIVi 169 (414)
T COG1004 160 DFLYPDRIVI 169 (414)
T ss_pred hccCCCeEEE
Confidence 33344554
No 235
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.64 E-value=0.00018 Score=65.05 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=64.0
Q ss_pred CCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
-++++|||.|..|...++.+.. +.. +|.+|+|++...+.+. ..+ +..+++.++++++||+|+.++|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 5789999999999988776553 344 5999999865433222 123 445679999999999999999743 222
Q ss_pred hcccHHHHccCCCCCEEEEcCC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~sr 129 (240)
.++..+. +|||+.+.-+|.
T Consensus 208 Pvl~~~~---lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDDM---VEPGMHINAVGG 226 (346)
T ss_pred ceecHHH---cCCCcEEEecCC
Confidence 4565543 599998887764
No 236
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.63 E-value=0.00014 Score=61.02 Aligned_cols=92 Identities=20% Similarity=0.111 Sum_probs=61.3
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-hHHHhc-Cceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET-GAKFE--EDLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~-g~~~~--~~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
.++.|+++.|||.|.+|..-++.|...|++|+++++...+. ...... .+... .--.+.+..+|+|+.++...+-
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l-- 82 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL-- 82 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH--
Confidence 36899999999999999999999999999999999865321 111122 23221 1113457889998887653222
Q ss_pred hcccHHHHccCCCCCEEEEcC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~s 128 (240)
+.......+...++||+.
T Consensus 83 ---n~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 83 ---NRRVAHAARARGVPVNVV 100 (205)
T ss_pred ---HHHHHHHHHHcCCEEEEC
Confidence 334444455556788864
No 237
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.63 E-value=0.00023 Score=63.20 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=65.0
Q ss_pred CCCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHH-Hh----cC--ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~-~~----~g--~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
.-+++||||.|..|+..++.+.. +.. +|.+|+|++.+.+.+ +. .| +..+++.++++++||+|+.++|.+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~-- 193 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD-- 193 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence 46899999999999998887764 344 599999986544322 11 24 345678999999999999999844
Q ss_pred hhhcccHHHHccCCCCCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~s 128 (240)
..++..+. +|||+.+.-+|
T Consensus 194 -~P~~~~~~---l~pg~hV~aiG 212 (301)
T PRK06407 194 -TPIFNRKY---LGDEYHVNLAG 212 (301)
T ss_pred -CcEecHHH---cCCCceEEecC
Confidence 46666654 57887776665
No 238
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00023 Score=63.97 Aligned_cols=88 Identities=22% Similarity=0.279 Sum_probs=68.6
Q ss_pred CCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHHH----h-cC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----E-TG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~~----~-~g--~~~~~~l~ell~~aDiVvl~lp~~~~t 106 (240)
-+++||||.|..++..++.++. ++. +|.+|+|++...+.+. . .+ +..+++.+++++.||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 5689999999999999998875 455 5999999875544332 2 23 3567899999999999999999654
Q ss_pred hhcccHHHHccCCCCCEEEEcCC
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~sr 129 (240)
.++..+. ++||+.|..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 6666655 579999999884
No 239
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.61 E-value=0.0002 Score=53.70 Aligned_cols=80 Identities=24% Similarity=0.251 Sum_probs=56.6
Q ss_pred hHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCC
Q 026360 46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121 (240)
Q Consensus 46 ~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~g 121 (240)
.-+..+++.|+..|++|.+|||.- ....... .+++..+++++.++.+|+|+++++- ++.+.+--.+....|+++
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~ 94 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYV-DEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKP 94 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTS-HHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSS
T ss_pred CHHHHHHHHHHHCCCEEEEECCcc-ChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCC
Confidence 456788999999999999999964 2333333 4677778999999999999999984 333443334566778889
Q ss_pred CEEEEc
Q 026360 122 VLIVNN 127 (240)
Q Consensus 122 ailIN~ 127 (240)
.+||++
T Consensus 95 ~~iiD~ 100 (106)
T PF03720_consen 95 PVIIDG 100 (106)
T ss_dssp EEEEES
T ss_pred CEEEEC
Confidence 999987
No 240
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.57 E-value=0.00099 Score=62.08 Aligned_cols=111 Identities=20% Similarity=0.274 Sum_probs=72.9
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEE-EEcCC-------CCChhHH--------------Hh-----cCceec
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE--------------KE-----TGAKFE 83 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~-------~~~~~~~--------------~~-----~g~~~~ 83 (240)
+.+|+|+||.|-|+|++|...|+.|...|++|+ +.|.+ ..+.+.. .. .+++..
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 456899999999999999999999999999988 44443 1111111 00 023333
Q ss_pred CCHHhhc-CcCCEEEEcCCCChhhhhcccHHHHccC-CCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 84 ~~l~ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~m-k~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+.++++ -.||+.+-|. +.+.|+.+..+.+ +.++.+|--+.......+ -.+.|++..|.
T Consensus 312 -~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~ 371 (454)
T PTZ00079 312 -PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVI 371 (454)
T ss_pred -CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcE
Confidence 222333 4689888776 5678887776655 556666666655556664 44667776665
No 241
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00063 Score=62.28 Aligned_cols=108 Identities=21% Similarity=0.395 Sum_probs=74.5
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC------------------Ch-hHHHhcCceecCCHHhhc-C
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM------------------DP-QLEKETGAKFEEDLDTML-P 91 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~------------------~~-~~~~~~g~~~~~~l~ell-~ 91 (240)
.+|+|+||.|-|+|++|+.+|+.|...|.+|+++|-+.. .. ......+.+..++ ++++ .
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~ 281 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV 281 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc
Confidence 358999999999999999999999999999998876543 11 1112234555544 4444 4
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (240)
Q Consensus 92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i 147 (240)
+||+.+-|. +.+.|+.+...+++-. +++-.+.|++ +.++--..++.|-+
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~-t~eA~~i~~erGIl 330 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPT-TPEADEILLERGIL 330 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCC-CHHHHHHHHHCCCE
Confidence 699887665 5788888888888866 6666666654 44444444444433
No 242
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.54 E-value=0.00075 Score=63.23 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=73.4
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-----hHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhh
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t 106 (240)
+.+++|+|+|+|..|.++|+.|+..|++|.++|..+... ......|+... ....+.+.++|+|+.. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 678999999999999999999999999999999754211 12344566442 2224556789998887 432211
Q ss_pred h-----------hcccH-HHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360 107 R-----------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (240)
Q Consensus 107 ~-----------~~i~~-~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~g~i 147 (240)
. .++++ +.+.+ .+...+-|.-+.|+.-...-+...|+....
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~ 144 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY 144 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 1 11221 22222 233356666667888888888888875443
No 243
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.0002 Score=61.04 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=50.6
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh--cCceec-------CCHHhh-cCcCCEEEEcCCCChh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--TGAKFE-------EDLDTM-LPKCDIVVVNTPLTEK 105 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~--~g~~~~-------~~l~el-l~~aDiVvl~lp~~~~ 105 (240)
|++.|+|+|.+|..+|+.|...|++|+.+|+++........ .+...+ ..|+++ +.++|+++.++..++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 57999999999999999999999999999987654444222 333211 233444 6789999999885543
No 244
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.46 E-value=0.0004 Score=64.27 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=67.3
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh--------
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-------- 107 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~-------- 107 (240)
.++|.|||+|.+|.++|+.|+..|++|+++|++..........+-......+...+++|+++.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 478999999999999999999999999999976532211110100111233445578998888765432110
Q ss_pred --hcccH-HH-Hcc--C-CCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360 108 --GMFDK-DR-IAK--M-KKGVLIVNNARGAIMDTQAVVDACSSG 145 (240)
Q Consensus 108 --~~i~~-~~-l~~--m-k~gailIN~srg~~vd~~aL~~aL~~g 145 (240)
.++.. +. +.. + ....+=|--+.|+.=...-+...|+..
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 12332 21 121 1 222455666668877777788888753
No 245
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.45 E-value=0.00045 Score=53.31 Aligned_cols=103 Identities=21% Similarity=0.259 Sum_probs=60.7
Q ss_pred CeEEEEcc-ChHHHHHHHHhcc-CCCEE-EEEcCCCCCh---hH-----HHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKP-FNCNL-LYHDRVKMDP---QL-----EKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~-~G~~V-~~~d~~~~~~---~~-----~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
.+|+|+|+ |+||+.+++.+.. -|+++ -++++.+.+. +. ....++...++++++++.+|+++-.. +|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence 37999999 9999999999987 68885 4567654110 10 01345666789999999999998776 233
Q ss_pred hhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
.-.-.-+.. ++.+.-+|-..+|---.+.+.++.+.+
T Consensus 79 ~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 79 AVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred HhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 222111222 334666776667764444444444443
No 246
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.45 E-value=0.00073 Score=60.06 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=58.7
Q ss_pred CeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChhH-HHhc-------C--ce-ecCCHHhhcCcCCEEEEcCCCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET-------G--AK-FEEDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~-~~~~-------g--~~-~~~~l~ell~~aDiVvl~lp~~ 103 (240)
++|+|||.|.+|..+|..|...| .+|.++|++....+. +.++ + .. ...+.+ .+++||+|+++....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCCC
Confidence 48999999999999999998888 479999987543221 1111 1 11 123444 478999999998642
Q ss_pred hh---h--------hhccc--HHHHccCCCCCEEEEcC
Q 026360 104 EK---T--------RGMFD--KDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 104 ~~---t--------~~~i~--~~~l~~mk~gailIN~s 128 (240)
.. + ..++. .+.+....|.+++++++
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11 1 11111 12344456788999987
No 247
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.44 E-value=0.00073 Score=59.63 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=48.4
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCC---Ch-hHHHhc---C----ceec--C---CHHhhcCcCCE
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKM---DP-QLEKET---G----AKFE--E---DLDTMLPKCDI 95 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~---~~-~~~~~~---g----~~~~--~---~l~ell~~aDi 95 (240)
++.++++.|+|.|.+|++++..|...|++ |++++|+.. +. +..+++ + +... + ++++.++.+|+
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 46799999999999999999999999996 999998752 11 111111 1 1111 1 22345567899
Q ss_pred EEEcCCC
Q 026360 96 VVVNTPL 102 (240)
Q Consensus 96 Vvl~lp~ 102 (240)
||.++|.
T Consensus 203 lINaTp~ 209 (289)
T PRK12548 203 LVNATLV 209 (289)
T ss_pred EEEeCCC
Confidence 9888884
No 248
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.43 E-value=0.00036 Score=61.43 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=51.4
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-HhcC----ceec---CCHHhhcCcCCEEEEcCCCC
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETG----AKFE---EDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~g----~~~~---~~l~ell~~aDiVvl~lp~~ 103 (240)
.+.|+++.|||.|.+|++++..|...|+ +|++++|+..+.+.. ...+ +... +++.+.+.++|+||.++|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 4679999999999999999999999997 599999975433322 2221 1112 12335567899999999854
No 249
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.40 E-value=0.00081 Score=59.73 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=72.4
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceec-----------CCHHhhcCcCCEEEEcCCCCh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE-----------EDLDTMLPKCDIVVVNTPLTE 104 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~-----------~~l~ell~~aDiVvl~lp~~~ 104 (240)
++|+|+|.|.||..+|-.|...|.+|.+++|.....+...+ .|+... ....+.....|+|++++...
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 57999999999999999999999999999986422232222 122110 01112245789999998633
Q ss_pred hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~ 151 (240)
++...+ +.....+.+++.+|-.- .++-.++.+.+.+.+.++.++.
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQ-NGv~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQ-NGLGSQDAVAARVPHARCIFAS 126 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEe-CCCCCHHHHHHhCCCCcEEEEE
Confidence 233322 34555677888777664 4455667777787666666543
No 250
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.39 E-value=0.00063 Score=54.75 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=49.8
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC-ceec-CCH-HhhcCcCCEEEEcCCCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-AKFE-EDL-DTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g-~~~~-~~l-~ell~~aDiVvl~lp~~ 103 (240)
.+|+|++|.|||.|.+|...++.|...|++|+++++.. . +...+++ +... ..+ ++-++++|+|+.++...
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~-~-~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~ 81 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI-C-KEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH 81 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc-C-HHHHhccCcEEEecccChhcCCCceEEEECCCCH
Confidence 47999999999999999999999999999999997643 2 2222232 1111 111 23467899998887643
No 251
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.39 E-value=6.4e-05 Score=63.58 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=78.0
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------cC------------------ceecC
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG------------------AKFEE 84 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g------------------~~~~~ 84 (240)
..=+.|+|||.|.||..+|+.....|+.|..+|.+......+.+ .+ ++..+
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 34568999999999999999999999999999987643222211 00 11234
Q ss_pred CHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEE-EcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC
Q 026360 85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 158 (240)
Q Consensus 85 ~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI-N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 158 (240)
+..+++.++|+|+=+.--+.+.+.-+.++.=...|+.+++. |+| -+...++..+++... ..++|--|.+-
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS---Sl~lt~ia~~~~~~s-rf~GlHFfNPv 159 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS---SLSLTDIASATQRPS-RFAGLHFFNPV 159 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc---ceeHHHHHhhccChh-hhceeeccCCc
Confidence 66677778888776665444444444444445567777664 443 345566777776544 34688766543
No 252
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=97.36 E-value=0.0021 Score=57.10 Aligned_cols=96 Identities=24% Similarity=0.357 Sum_probs=67.4
Q ss_pred ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCCC-Ch-h---HHHhcCc--eecCCHHhhcCcCCEEEEcCCC
Q 026360 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM-DP-Q---LEKETGA--KFEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~~-~~-~---~~~~~g~--~~~~~l~ell~~aDiVvl~lp~ 102 (240)
.+.|++|+++|- +++.++++..+..+|++|.+..|... .+ + .+.+.|. ...+++++.++++|+|....-.
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~ 226 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ 226 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence 489999999997 59999999999999999999987643 22 2 2223454 3467999999999999874311
Q ss_pred C------hhh-----hhcccHHHHccCCCCCEEEEcC
Q 026360 103 T------EKT-----RGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 103 ~------~~t-----~~~i~~~~l~~mk~gailIN~s 128 (240)
. ++. ..-++.+.++.+++++++..+.
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 0 010 1234666777777777776554
No 253
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.35 E-value=0.00075 Score=60.51 Aligned_cols=117 Identities=17% Similarity=0.303 Sum_probs=69.8
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----HHHh---cC----ceecCCHHhhcCcCCEEEEcC
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---TG----AKFEEDLDTMLPKCDIVVVNT 100 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~g----~~~~~~l~ell~~aDiVvl~l 100 (240)
+..+||+|||.|.+|..+|..+...|. +|..+|.++.... .... .+ +....+.+ .+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~-~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE-DIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH-HhCCCCEEEECC
Confidence 456899999999999999999887785 8999998764221 1111 11 22234664 679999999976
Q ss_pred CCCh----------------hhhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHHHH--hCCccEEE
Q 026360 101 PLTE----------------KTRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS 151 (240)
Q Consensus 101 p~~~----------------~t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~aL~--~g~i~ga~ 151 (240)
-... .+..++. .+.+....|.+++++++...=+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 3211 1111111 12233345778999998443333334443332 34566665
No 254
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=97.35 E-value=0.0013 Score=58.59 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=64.9
Q ss_pred ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCC------
Q 026360 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT------ 103 (240)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~------ 103 (240)
.+.|++|+++|- +++.++++..+..+|+++.+..|....++... .....+++++.++++|+|....=..
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~ 230 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLRVQKERMDGG 230 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECCccccccccc
Confidence 489999999996 69999999999999999999987543222111 2355679999999999998754110
Q ss_pred --hhh-----hhcccHHHHccCCCCCEEEEc
Q 026360 104 --EKT-----RGMFDKDRIAKMKKGVLIVNN 127 (240)
Q Consensus 104 --~~t-----~~~i~~~~l~~mk~gailIN~ 127 (240)
++. ...++++.++.+|+++++..+
T Consensus 231 ~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc 261 (305)
T PRK00856 231 LLPSYEEYKRSYGLTAERLALAKPDAIVMHP 261 (305)
T ss_pred chHHHHHHhccCccCHHHHhhcCCCCEEECC
Confidence 010 123466666666666666554
No 255
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.34 E-value=0.00071 Score=60.82 Aligned_cols=89 Identities=13% Similarity=0.244 Sum_probs=63.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC---CCChhHHHhcCceecCC----HHh--hcCcCCEEEEcCCCChh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV---KMDPQLEKETGAKFEED----LDT--MLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~---~~~~~~~~~~g~~~~~~----l~e--ll~~aDiVvl~lp~~~~ 105 (240)
.|.+|.|+|.|.+|...++.++..|++|++++++ +.+.+.++++|+..+.. ..+ .....|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 6899999999999999999999999999999873 33455566777654321 111 1234788888876211
Q ss_pred hhhcccHHHHccCCCCCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~s 128 (240)
...+.++.++++..++.++
T Consensus 251 ----~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 251 ----LAFEALPALAPNGVVILFG 269 (355)
T ss_pred ----HHHHHHHHccCCcEEEEEe
Confidence 1235667788888888776
No 256
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.33 E-value=0.00042 Score=53.07 Aligned_cols=87 Identities=21% Similarity=0.344 Sum_probs=51.2
Q ss_pred eEEEEc-cChHHHHHHHHhccC-CCEE-EEEcCCC-CChhHHHhc----Cc---eecCCHHhhcCcCCEEEEcCCCChhh
Q 026360 38 TVGTVG-CGRIGKLLLQRLKPF-NCNL-LYHDRVK-MDPQLEKET----GA---KFEEDLDTMLPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 38 ~vgIIG-~G~iG~~~A~~l~~~-G~~V-~~~d~~~-~~~~~~~~~----g~---~~~~~l~ell~~aDiVvl~lp~~~~t 106 (240)
||+||| .|.+|+.+.+.|... .+++ .+++++. .-....... +. ...+...+.+.++|+|++|+|... .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 699999 999999999999863 4564 4455544 111111111 11 111112234599999999999322 2
Q ss_pred hhcccHHHHccCCCCCEEEEcCC
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~sr 129 (240)
... .... +++|..+|+.+.
T Consensus 80 ~~~-~~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KEL-APKL---LKAGIKVIDLSG 98 (121)
T ss_dssp HHH-HHHH---HHTTSEEEESSS
T ss_pred HHH-HHHH---hhCCcEEEeCCH
Confidence 222 2222 578889999873
No 257
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.0005 Score=62.06 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=47.4
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC-ce-ec---CCHHhhcCcCCEEEE
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-AK-FE---EDLDTMLPKCDIVVV 98 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g-~~-~~---~~l~ell~~aDiVvl 98 (240)
+++|||||-|..|+.++...+.+|++|++.|+++..+...-... +. .. ..+.++.+.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 47999999999999999999999999999998765433221111 11 11 246788999999976
No 258
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.32 E-value=0.00049 Score=64.00 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=46.4
Q ss_pred CeEEEEccChHHHHHHH---Hh---ccCCCEEEEEcCCCCChhHHH--------hc----CceecCCHHhhcCcCCEEEE
Q 026360 37 KTVGTVGCGRIGKLLLQ---RL---KPFNCNLLYHDRVKMDPQLEK--------ET----GAKFEEDLDTMLPKCDIVVV 98 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~---~l---~~~G~~V~~~d~~~~~~~~~~--------~~----g~~~~~~l~ell~~aDiVvl 98 (240)
.+|+|||.|.+|.+.+. .+ ...|.+|..||+++...+... .. .+....++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 47999999999998655 22 344779999998764322211 11 12345688899999999999
Q ss_pred cCC
Q 026360 99 NTP 101 (240)
Q Consensus 99 ~lp 101 (240)
++|
T Consensus 81 ai~ 83 (423)
T cd05297 81 TIQ 83 (423)
T ss_pred eeE
Confidence 998
No 259
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.30 E-value=0.0015 Score=61.07 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=72.4
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC--CCC-h----h
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT--PLT-E----K 105 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~l--p~~-~----~ 105 (240)
++.|++|.|+|+|..|.++|+.|+..|++|.++|............|+.....-.+-+.++|+|+..- |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 36789999999999999999999999999999996533222233456543211123356799887642 211 1 1
Q ss_pred h---hh----cccH-HHHcc-C-----CCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 106 T---RG----MFDK-DRIAK-M-----KKGVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 106 t---~~----~i~~-~~l~~-m-----k~gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
. +. ++.+ +.+.. + +...+-|.-+.|+.=...-|...|+...
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g 140 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG 140 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 11 1322 22222 2 3345666677898888888888888633
No 260
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.30 E-value=0.00049 Score=63.93 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=51.3
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceec-------CCHHhh-cCcCCEEEEcCCCChh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE-------EDLDTM-LPKCDIVVVNTPLTEK 105 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~-------~~l~el-l~~aDiVvl~lp~~~~ 105 (240)
+++.|+|+|.+|+.+++.|...|++|+++|+++...+...+ .++... ..++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 47999999999999999999999999999987654444433 443221 234444 7889999999985443
No 261
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.29 E-value=0.00085 Score=50.43 Aligned_cols=85 Identities=24% Similarity=0.295 Sum_probs=57.1
Q ss_pred EEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHh----hcCcCCEEEEcCCCChhhhhcc
Q 026360 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDiVvl~lp~~~~t~~~i 110 (240)
|-|+|+|.+|+.+++.|+..+.+|++++.++...+.+.+.|+... .+.+. -++++|.++++.+....+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence 569999999999999999977799999987655566666665422 22222 257899999999855433 33
Q ss_pred cHHHHccCCCCCEEE
Q 026360 111 DKDRIAKMKKGVLIV 125 (240)
Q Consensus 111 ~~~~l~~mk~gailI 125 (240)
-...++.+.+...++
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 334455555655554
No 262
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.28 E-value=0.00069 Score=64.07 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=71.6
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecC--CHHhhcCcCCEEEEcCCCChh---h--
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEK---T-- 106 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~--~l~ell~~aDiVvl~lp~~~~---t-- 106 (240)
+.|+++.|+|+|..|.+.++.|+..|++|+++|..+...+.+++.|+.... ...+.++++|+|+.+-.-.+. .
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 478999999999999999999999999999999654333334455765431 234556789988887422221 1
Q ss_pred -----hhcccHHHHc-cC-------CC-CCEEEEcCCCcccCHHHHHHHHHhC
Q 026360 107 -----RGMFDKDRIA-KM-------KK-GVLIVNNARGAIMDTQAVVDACSSG 145 (240)
Q Consensus 107 -----~~~i~~~~l~-~m-------k~-gailIN~srg~~vd~~aL~~aL~~g 145 (240)
..++.+-.+. .. ++ ..+=|.-+.|+.=...-+.+.|+..
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~ 142 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA 142 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 1122221221 11 12 2344555668887777788888763
No 263
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.28 E-value=0.0025 Score=56.51 Aligned_cols=107 Identities=13% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhh--------
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT-------- 106 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t-------- 106 (240)
.|++++|||--.--..+++.|.+.|++|.++.-.. .+ ....|+..+++.+++++++|+|++-.|.+.+.
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~--~~-~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQ--LD-HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccc--cc-cccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 37899999999989999999999999998765321 11 12337777767889999999999988864322
Q ss_pred --hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccE
Q 026360 107 --RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 149 (240)
Q Consensus 107 --~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~g 149 (240)
.--++.+.++.|+++.+++ ++.+. .. +-+.+.+.++..
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~ 117 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL 117 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence 1113578899999998544 34332 22 446667777773
No 264
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.28 E-value=0.0011 Score=59.43 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=65.6
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhhcC---cCCEEEEcCCCCh
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP---KCDIVVVNTPLTE 104 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~---~aDiVvl~lp~~~ 104 (240)
..|.+|.|+|.|.+|...++.++..|. +|++.++++...+.++++|+..+ .+++++.. ..|+++-++...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~- 246 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP- 246 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-
Confidence 368999999999999999999999998 58888887767777777886432 12333332 268888777521
Q ss_pred hhhhcccHHHHccCCCCCEEEEcCC
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~sr 129 (240)
. . ....++.++++..++.++.
T Consensus 247 ~---~-~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 S---S-INTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---H-HHHHHHHhhcCCEEEEEcc
Confidence 1 1 1345667888888888863
No 265
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.27 E-value=0.002 Score=57.17 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=44.3
Q ss_pred CeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HH----h---cC--c--eecCCHHhhcCcCCEEEEcC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EK----E---TG--A--KFEEDLDTMLPKCDIVVVNT 100 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~----~---~g--~--~~~~~l~ell~~aDiVvl~l 100 (240)
++|+|||.|.+|..+|..+...|. +|..+|+++..... .. . .+ . ....+.+ .+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence 689999999999999999987664 99999986533211 11 0 01 1 1223554 478999999986
No 266
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=97.24 E-value=0.0024 Score=56.84 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=67.0
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh--hH----HHhcC--ceecCCHHhhcCcCCEEEEcC---
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QL----EKETG--AKFEEDLDTMLPKCDIVVVNT--- 100 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~----~~~~g--~~~~~~l~ell~~aDiVvl~l--- 100 (240)
.+.|++|+++|- +++.++++..+..+|++|.+..|..... +. ++..| +...++++++++++|+|..-.
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~ 228 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVS 228 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccc
Confidence 488999999996 8999999999999999999998754322 12 23345 345679999999999998752
Q ss_pred -CCCh---h-----hhhcccHHHHccCCCCCEEEEc
Q 026360 101 -PLTE---K-----TRGMFDKDRIAKMKKGVLIVNN 127 (240)
Q Consensus 101 -p~~~---~-----t~~~i~~~~l~~mk~gailIN~ 127 (240)
+... + ...-++++.++.+|++++|..+
T Consensus 229 ~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304)
T PRK00779 229 MGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304)
T ss_pred cccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence 1100 1 1223566677777777766554
No 267
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.0012 Score=58.37 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=52.5
Q ss_pred ccCCCeEEEEc---cChHHHHHHHHhccCCCEEEEEcCCCCCh-----hHHHhcC-c-eecCCHHhhcCcCCEEEEc
Q 026360 33 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETG-A-KFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 33 ~l~g~~vgIIG---~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g-~-~~~~~l~ell~~aDiVvl~ 99 (240)
.+.|++|+|+| +|++.++.++.|+.||.+|..+.|..... +.....| . ...+..+|.++++|++.+.
T Consensus 155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l 231 (316)
T COG0540 155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML 231 (316)
T ss_pred CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence 48999999999 89999999999999999999999865433 3333333 2 3344566699999999775
No 268
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.24 E-value=0.0067 Score=54.23 Aligned_cols=95 Identities=9% Similarity=0.014 Sum_probs=70.8
Q ss_pred HHHHHHHHhccCCCEEEEEcCCCCChh-------H-----------HHhcC-------------ceecCC--HHhhcCcC
Q 026360 47 IGKLLLQRLKPFNCNLLYHDRVKMDPQ-------L-----------EKETG-------------AKFEED--LDTMLPKC 93 (240)
Q Consensus 47 iG~~~A~~l~~~G~~V~~~d~~~~~~~-------~-----------~~~~g-------------~~~~~~--l~ell~~a 93 (240)
||..+|..+...|++|..||+++...+ . ....| +....+ ..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 688999999989999999999873210 0 00111 222222 56788999
Q ss_pred CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 143 (240)
Q Consensus 94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~ 143 (240)
|+|+-++|.+.+.+..+..+..+.++++++| ++.-+.+....|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 9999999999998888888888889999998 45556677788888774
No 269
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.23 E-value=0.0012 Score=59.69 Aligned_cols=66 Identities=27% Similarity=0.300 Sum_probs=44.5
Q ss_pred CeEEEEccChHHHHHHHHhcc-CCCEEEEEc-CCCCChhH-HHhc------------------CceecCCHHhhcCcCCE
Q 026360 37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHD-RVKMDPQL-EKET------------------GAKFEEDLDTMLPKCDI 95 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d-~~~~~~~~-~~~~------------------g~~~~~~l~ell~~aDi 95 (240)
.+|||+|+|+||+.+++.+.. -++++.+.. +.+..... +... ++....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 479999999999999998875 478876654 33211111 1111 23333567888889999
Q ss_pred EEEcCCC
Q 026360 96 VVVNTPL 102 (240)
Q Consensus 96 Vvl~lp~ 102 (240)
|+.|+|.
T Consensus 82 VIdaT~~ 88 (341)
T PRK04207 82 VVDATPG 88 (341)
T ss_pred EEECCCc
Confidence 9999983
No 270
>PLN02342 ornithine carbamoyltransferase
Probab=97.22 E-value=0.0032 Score=57.02 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=67.8
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh--hH---HHhcC---ceecCCHHhhcCcCCEEEEcC---
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QL---EKETG---AKFEEDLDTMLPKCDIVVVNT--- 100 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~---~~~~g---~~~~~~l~ell~~aDiVvl~l--- 100 (240)
.+.|++|+++|- .++.++++..+..+|++|.+..|..... +. ++..| +...+++++.++++|+|....
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 488999999995 5799999999999999999998754322 11 22233 455689999999999998863
Q ss_pred -CCChh--------hhhcccHHHHccCCCCCEEEEcC
Q 026360 101 -PLTEK--------TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 101 -p~~~~--------t~~~i~~~~l~~mk~gailIN~s 128 (240)
...+. ....++.+.++.+|++++|..+.
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 11111 11345777777778777776653
No 271
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.21 E-value=0.0014 Score=59.27 Aligned_cols=93 Identities=15% Similarity=0.221 Sum_probs=58.3
Q ss_pred CeEEEEcc-ChHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcC-------cee-cCCHHhhcCcCCEEEEcCCCCh
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETG-------AKF-EEDLDTMLPKCDIVVVNTPLTE 104 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g-------~~~-~~~l~ell~~aDiVvl~lp~~~ 104 (240)
++|+|+|. |.+|+.+++.|... +.++. ++++.....+ .....+ ... ..+.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999877 67777 4454331111 111111 111 114566667899999999943
Q ss_pred hhhhcccHHHHcc-CCCCCEEEEcCCCcccCH
Q 026360 105 KTRGMFDKDRIAK-MKKGVLIVNNARGAIMDT 135 (240)
Q Consensus 105 ~t~~~i~~~~l~~-mk~gailIN~srg~~vd~ 135 (240)
.. .+.... .+.|..+|+.|..--.+.
T Consensus 80 ~s-----~~~~~~~~~~G~~VIDlS~~fR~~~ 106 (346)
T TIGR01850 80 VS-----AELAPELLAAGVKVIDLSADFRLKD 106 (346)
T ss_pred HH-----HHHHHHHHhCCCEEEeCChhhhcCC
Confidence 22 222222 256899999996555553
No 272
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=97.19 E-value=0.00082 Score=61.32 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=57.2
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hhHHHhcCceec---CC---HHhhcCcCCEEEEcCCCChhhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~~---l~ell~~aDiVvl~lp~~~~t~ 107 (240)
.|.+|.|.|.|.+|..+++.++.+|.+|++.+++... .+.++++|+..+ .+ +.+.....|+++-++....
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~--- 254 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEH--- 254 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHH---
Confidence 5899999999999999999999999999888865432 344556665322 11 1122234577766654211
Q ss_pred hcccHHHHccCCCCCEEEEcC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~s 128 (240)
. -...++.++++..++.++
T Consensus 255 -~-~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 255 -A-LLPLFSLLKVSGKLVALG 273 (375)
T ss_pred -H-HHHHHHhhcCCCEEEEEc
Confidence 1 123455567777777665
No 273
>PLN02527 aspartate carbamoyltransferase
Probab=97.19 E-value=0.0041 Score=55.44 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=65.5
Q ss_pred ccCCCeEEEEccC---hHHHHHHHHhccC-CCEEEEEcCCCC-Ch-hH---HHhcCc--eecCCHHhhcCcCCEEEEcCC
Q 026360 33 DLEGKTVGTVGCG---RIGKLLLQRLKPF-NCNLLYHDRVKM-DP-QL---EKETGA--KFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 33 ~l~g~~vgIIG~G---~iG~~~A~~l~~~-G~~V~~~d~~~~-~~-~~---~~~~g~--~~~~~l~ell~~aDiVvl~lp 101 (240)
++.|.+|+++|-+ ++.++++..+..+ |++|.+..|... .. +. +++.|. ...+++++.++++|+|....-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence 4889999999965 6899999998887 999999887542 11 11 222343 446799999999999988542
Q ss_pred CCh------h-h-----hhcccHHHHccCCCCCEEEEcC
Q 026360 102 LTE------K-T-----RGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 102 ~~~------~-t-----~~~i~~~~l~~mk~gailIN~s 128 (240)
..+ . . ...++.+.++..++++++..+.
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl 266 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL 266 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence 111 0 1 1335666677777777666553
No 274
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0025 Score=56.15 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=61.4
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHH-hcC---c-eecCCHHhh--cCcCCEEEEcCCCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ETG---A-KFEEDLDTM--LPKCDIVVVNTPLT 103 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~-~~g---~-~~~~~l~el--l~~aDiVvl~lp~~ 103 (240)
.+..|+++.|+|.|..+++++..|+..|. +|++++|+..+.+... .++ . .......++ ..++|+||.++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45678999999999999999999999996 6999999764433322 222 1 011122222 22699999999965
Q ss_pred hhhh---hcccHHHHccCCCCCEEEEc
Q 026360 104 EKTR---GMFDKDRIAKMKKGVLIVNN 127 (240)
Q Consensus 104 ~~t~---~~i~~~~l~~mk~gailIN~ 127 (240)
-.-. ..++ ...++++.++.++
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~ 225 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDV 225 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEe
Confidence 3322 1233 4456777777666
No 275
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.18 E-value=0.0038 Score=55.18 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=49.1
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCC---Chh-HHHhcC------ceecCCH------HhhcCcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM---DPQ-LEKETG------AKFEEDL------DTMLPKCD 94 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~---~~~-~~~~~g------~~~~~~l------~ell~~aD 94 (240)
.++.|+++.|+|.|..+++++..|...|. +|++++|+.. +.+ .+..++ +.. .++ ++.+.++|
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASAD 198 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCC
Confidence 45789999999999999999998888887 6999999753 111 222221 111 222 23456789
Q ss_pred EEEEcCCC
Q 026360 95 IVVVNTPL 102 (240)
Q Consensus 95 iVvl~lp~ 102 (240)
+|+.++|.
T Consensus 199 ivINaTp~ 206 (288)
T PRK12749 199 ILTNGTKV 206 (288)
T ss_pred EEEECCCC
Confidence 99999985
No 276
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.0024 Score=59.64 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=77.5
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH--H--HhcCceec--CCHHhhcCcCCEEEEcC--CC-Ch
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--E--KETGAKFE--EDLDTMLPKCDIVVVNT--PL-TE 104 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~--~--~~~g~~~~--~~l~ell~~aDiVvl~l--p~-~~ 104 (240)
+.+++|.|+|+|.-|.++|+.|++.|++|+++|.++.+... . ...++... ....+.+.++|+|+..- |. +|
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 44999999999999999999999999999999966544111 1 12343322 11225678899998862 22 22
Q ss_pred hh-------hhcc-cHHHHccC-CCC-CEEEEcCCCcccCHHHHHHHHHh--------CCccEEEeeCCCCC
Q 026360 105 KT-------RGMF-DKDRIAKM-KKG-VLIVNNARGAIMDTQAVVDACSS--------GHIAGYSGDVWNPQ 158 (240)
Q Consensus 105 ~t-------~~~i-~~~~l~~m-k~g-ailIN~srg~~vd~~aL~~aL~~--------g~i~ga~lDV~~~E 158 (240)
.. ..++ +-+.+-+. ++. .+-|.-+.|+.=.+.-+...|++ |.|...++|+..++
T Consensus 85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 10 1122 22334333 122 44444455776666666777765 56667778887663
No 277
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=97.17 E-value=0.0033 Score=56.76 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=65.3
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC-C-hhHH-------HhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQLE-------KETG--AKFEEDLDTMLPKCDIVVVNT 100 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~-~-~~~~-------~~~g--~~~~~~l~ell~~aDiVvl~l 100 (240)
.+.|++|+++|- .++.++++..+..+|++|.++.|... . .+.. ...| +...+++++.++++|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 588999999995 78999999999999999999987632 1 1111 1224 445679999999999998833
Q ss_pred -----CCC---hh------hhhcccHHHHccCCCCCEEEEc
Q 026360 101 -----PLT---EK------TRGMFDKDRIAKMKKGVLIVNN 127 (240)
Q Consensus 101 -----p~~---~~------t~~~i~~~~l~~mk~gailIN~ 127 (240)
... ++ ...-++++.++.+|++++|..+
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp 271 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC 271 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence 110 00 0133566666666666666554
No 278
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.17 E-value=0.0013 Score=58.31 Aligned_cols=112 Identities=18% Similarity=0.288 Sum_probs=63.1
Q ss_pred EEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----HHHh---cC----ceecCCHHhhcCcCCEEEEcCCC--C
Q 026360 39 VGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---TG----AKFEEDLDTMLPKCDIVVVNTPL--T 103 (240)
Q Consensus 39 vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~g----~~~~~~l~ell~~aDiVvl~lp~--~ 103 (240)
|+|||.|.||..+|..+...|. +|+.+|+++.... .... .+ +....+.+ .+++||+|+++... .
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence 6899999999999998886665 9999998754221 0110 01 12224554 48999999997731 1
Q ss_pred h---------hhhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHHH--HhCCccEEE
Q 026360 104 E---------KTRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDAC--SSGHIAGYS 151 (240)
Q Consensus 104 ~---------~t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~aL--~~g~i~ga~ 151 (240)
+ .+..++. .+.+....|++++|+++-..=+-...+.+.. ...++.|.+
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 1 1111111 1223334577888888743323333333332 123566655
No 279
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.16 E-value=0.0012 Score=64.12 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=65.8
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHhh----cCcCCEEEEcCCCChhhh
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l~~aDiVvl~lp~~~~t~ 107 (240)
..++-|+|+|++|+.+++.|...|.++++.|.++...+..++.|.... ++.+-+ +++||.+++++++.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 457999999999999999999999999999988766666666665321 222222 578999999999766654
Q ss_pred hcccHHHHccCCCCCEEEEcCC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~sr 129 (240)
.++ ...+.+.|...++--+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 443 33455666666655443
No 280
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=97.14 E-value=0.0033 Score=55.99 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=67.3
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh-hH--------HHhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-QL--------EKETG--AKFEEDLDTMLPKCDIVVVNT 100 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~--------~~~~g--~~~~~~l~ell~~aDiVvl~l 100 (240)
.+.|.+|+++|- +++.++++..+..+|++|.+..|..... +. +...| +...+++++.++++|+|..-.
T Consensus 145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~ 224 (304)
T TIGR00658 145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDV 224 (304)
T ss_pred CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 488999999995 7999999999999999999998754322 11 22334 345679999999999998853
Q ss_pred --CCC-----hh-----hhhcccHHHHccCCCCCEEEEcC
Q 026360 101 --PLT-----EK-----TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 101 --p~~-----~~-----t~~~i~~~~l~~mk~gailIN~s 128 (240)
... ++ ....++++.++.+|+++++..+.
T Consensus 225 w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 225 WVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred cccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 100 01 12245777777777777766553
No 281
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.14 E-value=0.0038 Score=58.88 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=70.2
Q ss_pred ccCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc----------------------Cc
Q 026360 33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------------GA 80 (240)
Q Consensus 33 ~l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g~ 80 (240)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||.-...+..... ++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 488999999996 4578889999999999999999863221111111 12
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHH
Q 026360 81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139 (240)
Q Consensus 81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~ 139 (240)
....+.++.++++|+|+++++.. +.+.+--.+..+.|++..+++|. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-HhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 44556778999999999999743 33333223335557766688885 44 44655543
No 282
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.13 E-value=0.0012 Score=63.35 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=61.4
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHh----hcCcCCEEEEcCCCChhhhh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDiVvl~lp~~~~t~~ 108 (240)
.++-|+|+|++|+.+|+.|+..|.+|+++|.++...+..++.|+... .+.+- -++++|.+++++++++++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 46789999999999999999999999999987766666666665321 22221 24689999999987766555
Q ss_pred cccHHHHccCCCCCEEEE
Q 026360 109 MFDKDRIAKMKKGVLIVN 126 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN 126 (240)
++.. ...+.++..+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 4432 223345555553
No 283
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.13 E-value=0.0017 Score=56.02 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=72.2
Q ss_pred HHHHHHHhccCCCEEEEEcCCCCChh-----HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCC
Q 026360 48 GKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122 (240)
Q Consensus 48 G~~~A~~l~~~G~~V~~~d~~~~~~~-----~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~ga 122 (240)
|..+|..+...|++|+..+|+..-.+ ...+.|++.+++-.+..+.+.+.++-+|....|.++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 56778888888999999998753222 2345688888788889999999999999998887764 68999999999
Q ss_pred EEEEcCCCcccCHHHHHHHH
Q 026360 123 LIVNNARGAIMDTQAVVDAC 142 (240)
Q Consensus 123 ilIN~srg~~vd~~aL~~aL 142 (240)
++.|+..-+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999976544 455555
No 284
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=97.12 E-value=0.0026 Score=56.77 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=52.3
Q ss_pred ccCCCeEEEEcc---ChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 026360 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~ 99 (240)
.+.|.+|+++|= +++.++++..+..+|+ +|.+..|....++......+...+++++.++++|+|...
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~ 224 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTL 224 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEEC
Confidence 478999999996 6999999999999999 899998754322221112355568999999999999873
No 285
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.12 E-value=0.0018 Score=57.89 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=58.9
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHhc--------Cce-ecCCHHhhcCcCCEEEEcCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--------GAK-FEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~~--------g~~-~~~~l~ell~~aDiVvl~lp~ 102 (240)
.++||+|||.|.+|..+|..+...|. ++..+|.+..... ...++ ... ...+. +.+++||+|+++.-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 57899999999999999999988887 7999998653321 11110 111 12234 458999999998642
Q ss_pred --Ch-hhh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360 103 --TE-KTR--------GMFD--KDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 103 --~~-~t~--------~~i~--~~~l~~mk~gailIN~sr 129 (240)
.| .++ .++. .+.+..-.|++++++++-
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 11 111 1111 122333347889999883
No 286
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.11 E-value=0.037 Score=47.00 Aligned_cols=93 Identities=19% Similarity=0.197 Sum_probs=61.2
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----------------------HHHhc----Cceec
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET----GAKFE 83 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~----g~~~~ 83 (240)
..|.+++|.|+|+|.+|..+|+.|...|. +++++|....... ...+. .+...
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 5788875421100 00011 01111
Q ss_pred ------CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 84 ------~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.++++++.++|+|+.|+. +..++..+++...+ .+..+|+++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 234567888999988876 55667666654443 345577765
No 287
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=97.11 E-value=0.0019 Score=58.49 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=60.1
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hhHHHhcCceec---C---CHHhhcCcCCEEEEcCCCChhhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---E---DLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~---~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
.|.+|.|.|.|.+|..+++.++..|.+|++.+.+... ...++++|+..+ . .+.+.....|+++-++....
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~--- 259 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVH--- 259 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHH---
Confidence 5889999999999999999999999998887765433 233455676322 1 12233334688887765211
Q ss_pred hcccHHHHccCCCCCEEEEcC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~s 128 (240)
.+ .+.++.++++..++.++
T Consensus 260 -~~-~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 260 -AL-GPLLGLLKVNGKLITLG 278 (360)
T ss_pred -HH-HHHHHHhcCCcEEEEeC
Confidence 11 24566788888888876
No 288
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.11 E-value=0.0014 Score=54.91 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=60.8
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-------------------h----HHHhc--Cce----
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKET--GAK---- 81 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~--g~~---- 81 (240)
..|.+++|.|+|+|.+|..+|+.|...|. +++++|++.... + ...+. .++
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 699999762110 0 11111 111
Q ss_pred --ec--CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 82 --FE--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 82 --~~--~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.. .+++++++++|+|+.++. +.+++..+++...+.- ..+|..+
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~---ip~i~~~ 143 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALG---TPLISAA 143 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcC---CCEEEEE
Confidence 11 134567888999888874 4566666665444332 3355554
No 289
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.10 E-value=0.0012 Score=59.60 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=57.5
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCC---------------------hh----HHHhc--Cce--
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD---------------------PQ----LEKET--GAK-- 81 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~---------------------~~----~~~~~--g~~-- 81 (240)
..|++++|.|||+|.+|..+|+.|...|. ++.++|++... .+ ...+. ++.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999998 78889876311 00 01111 111
Q ss_pred e------cCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360 82 F------EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (240)
Q Consensus 82 ~------~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~ 114 (240)
. ..+++++++++|+|+.++ ++.+++.+++.-.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~ 137 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLS 137 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHH
Confidence 1 124577889999998887 4566777766443
No 290
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=97.09 E-value=0.0038 Score=53.91 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=59.5
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~ 116 (240)
.++-|+|.|.+++.+++.++..|++|+++|+++. .... .....++.+....| .+.+.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~---~~~~----------~~~~~~~~~~~~~~----------~~~~~ 157 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA---EFPE----------DLPDGVATLVTDEP----------EAEVA 157 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc---cccc----------cCCCCceEEecCCH----------HHHHh
Confidence 5899999999999999999999999999997542 1100 01123333322222 12222
Q ss_pred cCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 117 ~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
.+.+++.+|=+.++.-.|.+.|..+|++....
T Consensus 158 ~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~ 189 (246)
T TIGR02964 158 EAPPGSYFLVLTHDHALDLELCHAALRRGDFA 189 (246)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence 34567777778888888888888888544443
No 291
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.08 E-value=0.0016 Score=56.71 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceecCCH---Hh----hc--CcCCEEEEcCCCCh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL---DT----ML--PKCDIVVVNTPLTE 104 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l---~e----ll--~~aDiVvl~lp~~~ 104 (240)
.|.+|.|+|.|.+|...++.++..|.+ |++.++++.+.+.++++|+..+-+. .+ +. ...|+++-++...+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 689999999999999999999999997 8888876656666777776432111 11 11 24688877764221
Q ss_pred hhhhcccHHHHccCCCCCEEEEcC
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~s 128 (240)
. ....++.++++..++.++
T Consensus 200 ----~-~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 200 ----A-VRACLESLDVGGTAVLAG 218 (280)
T ss_pred ----H-HHHHHHHhcCCCEEEEec
Confidence 1 124466678888888776
No 292
>PRK04148 hypothetical protein; Provisional
Probab=97.07 E-value=0.0011 Score=51.98 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=53.3
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhcCcCCEEEEcCCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~~aDiVvl~lp~~ 103 (240)
+++++.+||+| -|..+|..|+..|++|++.|.++...+.+++.+...+ +.--++.+.+|+|...-|-.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 57899999999 8999999999999999999998766665665554321 23346788999998888843
No 293
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=97.06 E-value=0.0048 Score=55.57 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=66.1
Q ss_pred ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCChh---------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDPQ---------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~~---------~~~~~g--~~~~~~l~ell~~aDiVvl~ 99 (240)
.+.|++|++||-+ ++.++++..+..+|++|.+..|...... .++..| +...++++++++++|+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4889999999986 8999999999999999999987542221 112234 34567999999999999885
Q ss_pred CCCC-------hh-----hhhcccHHHHc-cCCCCCEEEEcC
Q 026360 100 TPLT-------EK-----TRGMFDKDRIA-KMKKGVLIVNNA 128 (240)
Q Consensus 100 lp~~-------~~-----t~~~i~~~~l~-~mk~gailIN~s 128 (240)
.=.. ++ ...-++++.++ .+|+++++..+.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 3110 01 12234666666 367777766553
No 294
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.06 E-value=0.0086 Score=55.67 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=72.9
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh----hHHHhcCceec--CCHHhhcCc-CCEEEEcC--CC-
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE--EDLDTMLPK-CDIVVVNT--PL- 102 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~----~~~~~~g~~~~--~~l~ell~~-aDiVvl~l--p~- 102 (240)
++.|+++.|+|.|.+|.++|+.|.+.|++|+++|+..... +.....|+... ....+++.. .|+|+... |.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 3679999999999999999999999999999999754221 22334465432 233344554 89888764 22
Q ss_pred Chhh-------hhcccH-HHHccC-CCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 103 TEKT-------RGMFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 103 ~~~t-------~~~i~~-~~l~~m-k~gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
.+.. ..++.+ ++...+ +...+-|--+.|+.-...-+...|+...
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 2211 122332 232233 3345666666788888888888887643
No 295
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.06 E-value=0.0033 Score=55.79 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=59.0
Q ss_pred CCeEEEEccChHHHHHHHHhcc-CCCEEE-EEcCCCCCh--hHHHhcCcee-cCCHHhhcC-----cCCEEEEcCCCChh
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP--QLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK 105 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~-~G~~V~-~~d~~~~~~--~~~~~~g~~~-~~~l~ell~-----~aDiVvl~lp~~~~ 105 (240)
..++||||.|.||+.++..+.. -++++. ++|+++... ..+++.|+.. ..+.+++++ +.|+|+.++|..
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 4689999999999997766654 466755 556655322 4456678764 468899885 588899999832
Q ss_pred hhhcccHHHHccCCCCCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~s 128 (240)
... +......+.|..+|+-+
T Consensus 82 ~H~---e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 82 AHV---RHAAKLREAGIRAIDLT 101 (302)
T ss_pred HHH---HHHHHHHHcCCeEEECC
Confidence 111 11222356788888876
No 296
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.05 E-value=0.0015 Score=61.46 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=72.7
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-HHhcCceecC--CHHhhcCcCCEEEEcC--C-CChhh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEE--DLDTMLPKCDIVVVNT--P-LTEKT 106 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~--~l~ell~~aDiVvl~l--p-~~~~t 106 (240)
.+.+++|.|+|+|..|.++|+.|...|++|.++|+....... ....|+.... ...+.+.++|+||..- | ..|..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 578999999999999999999999999999999975432221 2345765432 2234567899887763 2 22221
Q ss_pred -------hhcccHHHHc-c------C-CC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 107 -------RGMFDKDRIA-K------M-KK-GVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 107 -------~~~i~~~~l~-~------m-k~-gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
..++.+-.+. . + .+ ..+-|--+.|+.-...-+.+.|+...
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1122222221 1 1 12 24555556688888888888887644
No 297
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=97.04 E-value=0.0053 Score=55.34 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=66.3
Q ss_pred ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh--h-------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP--Q-------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~--~-------~~~~~g--~~~~~~l~ell~~aDiVvl~ 99 (240)
.+.|++|++||-+ ++.++++..+..+|++|.+..|....+ + .++..| +...+++++.++++|+|..-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 4789999999964 899999999999999999998753221 1 112345 44568999999999999885
Q ss_pred CCCC--------hh-----hhhcccHHHHccCC-CCCEEEEcC
Q 026360 100 TPLT--------EK-----TRGMFDKDRIAKMK-KGVLIVNNA 128 (240)
Q Consensus 100 lp~~--------~~-----t~~~i~~~~l~~mk-~gailIN~s 128 (240)
.=.. ++ ....++++.++.++ |+++|..+.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 3110 00 12235667777775 477766654
No 298
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.04 E-value=0.0018 Score=57.70 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=46.4
Q ss_pred CeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChh-HHHhc-Cce--------ecCCHHhhcCcCCEEEEcCCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-GAK--------FEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~-~~~~~-g~~--------~~~~l~ell~~aDiVvl~lp~ 102 (240)
++|+|||.|.+|..+|..|...| .+|..+|++..... .+.++ +.. ...+. +.+++||+|+++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence 47999999999999999998888 57999998753322 11111 110 11344 458999999999875
No 299
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=97.03 E-value=0.0047 Score=55.69 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=67.6
Q ss_pred ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh-h--------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g--~~~~~~l~ell~~aDiVvl~ 99 (240)
.+.|++|++||-+ ++.++++..+..+|++|.++.|....+ + .++..| +...+++++.++++|+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4889999999975 689999999999999999998753221 1 112235 44568999999999999874
Q ss_pred C----CCC-h--hh------hhcccHHHHccC-CCCCEEEEcC
Q 026360 100 T----PLT-E--KT------RGMFDKDRIAKM-KKGVLIVNNA 128 (240)
Q Consensus 100 l----p~~-~--~t------~~~i~~~~l~~m-k~gailIN~s 128 (240)
. ... + .. ...++.+.++.. |++++|..+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 3 110 0 01 123577778775 6888887765
No 300
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.02 E-value=0.0013 Score=55.43 Aligned_cols=90 Identities=23% Similarity=0.272 Sum_probs=63.5
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH---HhcCcee---cCCHHhhcCcCCEEEEcCCCChh
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE---KETGAKF---EEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~---~~~g~~~---~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
.+|.|++|.|||-|.+|..=++.+...|.+|+++++.. .++.. ...++.. ..+.++ +..+++|+.++++.
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~-- 83 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE-- 83 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH--
Confidence 47899999999999999999999999999999999865 22221 1112111 113333 44599999998743
Q ss_pred hhhcccHHHHccCCCCCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~s 128 (240)
-+++.....+++-.++||+.
T Consensus 84 ---~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 84 ---ELNERIAKAARERRILVNVV 103 (210)
T ss_pred ---HHHHHHHHHHHHhCCceecc
Confidence 34556666667767888885
No 301
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.02 E-value=0.0039 Score=55.67 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=66.3
Q ss_pred CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHH----hc------CceecCCHHhhcCcCCEEEEcCCC-
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEK----ET------GAKFEEDLDTMLPKCDIVVVNTPL- 102 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~----~~------g~~~~~~l~ell~~aDiVvl~lp~- 102 (240)
.||+|||.|.+|..+|..+...|. ++..+|.+..... .+. .. .+....+.++ +++||+|+++.-.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 589999999999999998876554 6999998653221 111 11 1222245665 8999999997632
Q ss_pred -Ch-hhhh--------ccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHH--HHhCCccEEE
Q 026360 103 -TE-KTRG--------MFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS 151 (240)
Q Consensus 103 -~~-~t~~--------~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~a--L~~g~i~ga~ 151 (240)
.+ .++. ++- .+.+....|++++++++-.-=+-...+.+. +...++.|.+
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecC
Confidence 11 1221 111 123344578899999983221222223333 4445666553
No 302
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.00 E-value=0.0067 Score=56.45 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=71.2
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-h----hHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P----QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~----~~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
++.++++.|+|.|.+|.++|+.|...|++|+++|+.... . +.....|+.. .+..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 468999999999999999999999999999999986421 1 1122335432 22334556789999887543322
Q ss_pred hh--------hc--cc-HHHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 106 TR--------GM--FD-KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 106 t~--------~~--i~-~~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
.. ++ +. .+.+.. .+...+-|.-+.|+.-...-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11 11 11 112222 232344555567888888888888875
No 303
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.99 E-value=0.0029 Score=56.59 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=64.9
Q ss_pred cCCCeEEEEccChHHHHHHHHhcc-------CCCEEEEEcCCCCChh----HHHh-----------------cCceecCC
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKP-------FNCNLLYHDRVKMDPQ----LEKE-----------------TGAKFEED 85 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~-------~G~~V~~~d~~~~~~~----~~~~-----------------~g~~~~~~ 85 (240)
-.-++|+|||.|++|+++|+.+.. |..+|..|-....... ..+- ..+..++|
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 345799999999999999988753 2334544432211111 1110 12345678
Q ss_pred HHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 86 l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
+.+.+.+||+++..+|.. -..-+-++.....|+++..|....|=
T Consensus 99 l~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecce
Confidence 999999999999999932 22224567888899999999998773
No 304
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.99 E-value=0.0028 Score=56.65 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=65.7
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHH-hhcCcCCEEEEcCCCChhhhhcccHH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD-TMLPKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~-ell~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
.|.+|.|.|.|.+|..+++.++..|.+|++.++++.+.+.++++|+..+-+.. +.-+..|+++.+.... .. ...
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~----~~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG----GL-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH----HH-HHH
Confidence 48899999999999999999999999999988877677788888875432221 1123467777666532 12 345
Q ss_pred HHccCCCCCEEEEcC
Q 026360 114 RIAKMKKGVLIVNNA 128 (240)
Q Consensus 114 ~l~~mk~gailIN~s 128 (240)
.++.++++..++.++
T Consensus 240 ~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 240 ALEALDRGGVLAVAG 254 (329)
T ss_pred HHHhhCCCcEEEEEe
Confidence 677889999888876
No 305
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=96.98 E-value=0.0012 Score=51.31 Aligned_cols=127 Identities=14% Similarity=0.204 Sum_probs=73.6
Q ss_pred hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEE
Q 026360 46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125 (240)
Q Consensus 46 ~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI 125 (240)
.+.......|+. |++|.+++.. .. +.+.+.++++|+++.... ..++++.++.+ |+..+|
T Consensus 6 ~~~~~~~~~l~~-~~~v~~~~~~--~~-----------~~~~~~l~~~d~ii~~~~------~~~~~~~l~~~-~~Lk~I 64 (133)
T PF00389_consen 6 PLPDEEIERLEE-GFEVEFCDSP--SE-----------EELAERLKDADAIIVGSG------TPLTAEVLEAA-PNLKLI 64 (133)
T ss_dssp S-SHHHHHHHHH-TSEEEEESSS--SH-----------HHHHHHHTTESEEEESTT------STBSHHHHHHH-TT-SEE
T ss_pred cCCHHHHHHHHC-CceEEEeCCC--CH-----------HHHHHHhCCCeEEEEcCC------CCcCHHHHhcc-ceeEEE
Confidence 444555666776 6688777721 11 134566888999987653 14567777777 444455
Q ss_pred EcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHcc
Q 026360 126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSH 205 (240)
Q Consensus 126 N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g 205 (240)
.....++ |.-++ +++++.+|.- .- -|.....+.-++ +|+|.++..++.. .+.+|+.+|++|
T Consensus 65 ~~~~~G~-d~id~-~~a~~~gI~V--~n----~~g~~~~aVAE~---------a~~T~e~~~~~~~--~~~~ni~~~l~g 125 (133)
T PF00389_consen 65 STAGAGV-DNIDL-EAAKERGIPV--TN----VPGYNAEAVAEH---------AGYTDEARERMAE--IAAENIERFLNG 125 (133)
T ss_dssp EESSSSC-TTB-H-HHHHHTTSEE--EE-----TTTTHHHHHHH---------HTGBHHHHHHHHH--HHHHHHHHHHTT
T ss_pred EEccccc-CcccH-HHHhhCeEEE--EE----eCCcCCcchhcc---------chhHHHHHHHHHH--HHHHHHHHHHcC
Confidence 5544443 44444 4444555541 11 111100011111 1899999999999 999999999999
Q ss_pred CCC-CCCc
Q 026360 206 KSN-SELK 212 (240)
Q Consensus 206 ~~~-~~v~ 212 (240)
+++ +.||
T Consensus 126 ~~~~n~VN 133 (133)
T PF00389_consen 126 EPPENVVN 133 (133)
T ss_dssp ST-TTBSS
T ss_pred CCCCCCCC
Confidence 866 6665
No 306
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.97 E-value=0.0034 Score=55.33 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=50.0
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-Hhc----Cc---eecC--CHHhhcCcCCEEEEcCC
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KET----GA---KFEE--DLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~----g~---~~~~--~l~ell~~aDiVvl~lp 101 (240)
++.++++.|+|.|..|++++..|...|+ +|++++|+..+.+.. ..+ +. ...+ +.++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 4678999999999999999999998997 589999975433322 211 11 1111 12345677999999998
Q ss_pred CC
Q 026360 102 LT 103 (240)
Q Consensus 102 ~~ 103 (240)
..
T Consensus 204 ~G 205 (283)
T PRK14027 204 MG 205 (283)
T ss_pred CC
Confidence 43
No 307
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.96 E-value=0.0029 Score=56.37 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=81.7
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------------CCHHhhcCcCCEEEEcCCCCh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------EDLDTMLPKCDIVVVNTPLTE 104 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------------~~l~ell~~aDiVvl~lp~~~ 104 (240)
++|.|+|.|.||..++..|...|..|+.+.|++. .+..++.|.... ....+.+..+|+|++++...
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~- 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY- 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-
Confidence 5899999999999999999999977888887653 344444443211 12235566899999998632
Q ss_pred hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCC-CCCCCCeEEcCCCCCCc
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTT 182 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~-l~~~~nv~~TPH~a~~t 182 (240)
++...+ +.....+++.+.++-+- -++=.++.+.+.....++.+ ++..+...-..+.+- ......+.+.+..++.+
T Consensus 79 q~~~al-~~l~~~~~~~t~vl~lq-NG~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 79 QLEEAL-PSLAPLLGPNTVVLFLQ-NGLGHEEELRKILPKETVLG-GVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cHHHHH-HHhhhcCCCCcEEEEEe-CCCcHHHHHHHhCCcceEEE-EEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 233332 35556677777666443 33444555555555554442 333222111011111 12234566766666544
No 308
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.93 E-value=0.0041 Score=56.13 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=65.2
Q ss_pred ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh-h--------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETG--AKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g--~~~~~~l~ell~~aDiVvl~ 99 (240)
.+.|++|++||-+ ++.++++..+..+|+++.+..|..... + .++..| +...+++++.++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4889999999975 789999999999999999998754221 1 122234 45568999999999999885
Q ss_pred CCCCh-------h------hhhcccHHHHccC-CCCCEEEEcC
Q 026360 100 TPLTE-------K------TRGMFDKDRIAKM-KKGVLIVNNA 128 (240)
Q Consensus 100 lp~~~-------~------t~~~i~~~~l~~m-k~gailIN~s 128 (240)
.=.+. . ...-++++.++.. |+++++..+.
T Consensus 233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 31100 0 1123455666653 5666666553
No 309
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.93 E-value=0.002 Score=59.12 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=62.1
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHh-c------CceecCCHH-hhcCcCCEEEEcCCCCh
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKE-T------GAKFEEDLD-TMLPKCDIVVVNTPLTE 104 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~-~------g~~~~~~l~-ell~~aDiVvl~lp~~~ 104 (240)
.-++|+|+|. |.+|+.+.+.|... +++|..+.+.....+.... . ......+++ +.++++|+|++++|..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~- 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG- 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence 4569999995 99999999999877 7788777653222111111 0 011112222 2257899999999942
Q ss_pred hhhhcccHHHHccCCCCCEEEEcCCCcccCHHH
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~srg~~vd~~a 137 (240)
...+....|+.|..+|+.|..-..+.++
T Consensus 116 -----~s~~i~~~~~~g~~VIDlSs~fRl~~~~ 143 (381)
T PLN02968 116 -----TTQEIIKALPKDLKIVDLSADFRLRDIA 143 (381)
T ss_pred -----HHHHHHHHHhCCCEEEEcCchhccCCcc
Confidence 2334444456789999999766666553
No 310
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.90 E-value=0.0048 Score=54.44 Aligned_cols=88 Identities=22% Similarity=0.274 Sum_probs=56.7
Q ss_pred CeEEEEccChHHHHHHHHhc-cCCCEEE-EEcCCCCC--hhHHHhcCce-ecCCHHhhcC--cCCEEEEcCCCChhhhhc
Q 026360 37 KTVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMD--PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~-~~G~~V~-~~d~~~~~--~~~~~~~g~~-~~~~l~ell~--~aDiVvl~lp~~~~t~~~ 109 (240)
.++||||.|.||+.++..+. .-++++. ++|+++.+ ...+++.|+. ...+.+++++ +.|+|++++|......
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e-- 79 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR-- 79 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence 47999999999998876665 3467755 46766543 2445667764 3457888885 5788999998432211
Q ss_pred ccHHHHccCCCCCEEEEcCC
Q 026360 110 FDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~sr 129 (240)
.....++.|..+++-.-
T Consensus 80 ---~a~~al~aGk~VIdekP 96 (285)
T TIGR03215 80 ---HARLLAELGKIVIDLTP 96 (285)
T ss_pred ---HHHHHHHcCCEEEECCc
Confidence 12233455666665543
No 311
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.90 E-value=0.0027 Score=61.86 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=63.5
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHH----hhcCcCCEEEEcCCCChhhh
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD----TMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~----ell~~aDiVvl~lp~~~~t~ 107 (240)
..++-|+|+|++|+.+++.|.+.|.++++.|.++...+..++.|...+ ++.+ .-++++|.+++++++++.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999988766666666665321 2332 12468999999998666554
Q ss_pred hcccHHHHccCCCCCEEEEc
Q 026360 108 GMFDKDRIAKMKKGVLIVNN 127 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~ 127 (240)
.+. ...+.+.|+..++--
T Consensus 480 ~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred HHH--HHHHHhCCCCeEEEE
Confidence 443 344445566555443
No 312
>PRK05086 malate dehydrogenase; Provisional
Probab=96.89 E-value=0.0054 Score=54.77 Aligned_cols=94 Identities=27% Similarity=0.294 Sum_probs=57.3
Q ss_pred CeEEEEcc-ChHHHHHHHHhc---cCCCEEEEEcCCCCCh----hHHH-h--cCcee--cCCHHhhcCcCCEEEEcCCCC
Q 026360 37 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDP----QLEK-E--TGAKF--EEDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~---~~G~~V~~~d~~~~~~----~~~~-~--~g~~~--~~~l~ell~~aDiVvl~lp~~ 103 (240)
++|+|||. |.+|..++..+. ..+.++..+|+++... +... . ..+.. .+++.+.++++|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998773 3456789999764321 1111 0 01111 246667789999999997531
Q ss_pred hh---hhhc-------ccHHH---HccCCCCCEEEEcCCC
Q 026360 104 EK---TRGM-------FDKDR---IAKMKKGVLIVNNARG 130 (240)
Q Consensus 104 ~~---t~~~-------i~~~~---l~~mk~gailIN~srg 130 (240)
.. ++.- +-.+. +....+.+++++++-.
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 11 1111 11223 3334578899998754
No 313
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.88 E-value=0.0029 Score=64.65 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=47.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccC-CCE-------------EEEEcCCCCChhHH-Hhc-Cc---ee-cCCHHhhc---C
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPF-NCN-------------LLYHDRVKMDPQLE-KET-GA---KF-EEDLDTML---P 91 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~-G~~-------------V~~~d~~~~~~~~~-~~~-g~---~~-~~~l~ell---~ 91 (240)
+.++|+|||.|.||+.+|+.|... +.+ |.+.|++....+.. ... ++ .. +.+.+++. +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 578999999999999999999753 333 88888875433322 222 32 22 34555544 6
Q ss_pred cCCEEEEcCCC
Q 026360 92 KCDIVVVNTPL 102 (240)
Q Consensus 92 ~aDiVvl~lp~ 102 (240)
++|+|++++|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
No 314
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.85 E-value=0.0027 Score=55.20 Aligned_cols=97 Identities=27% Similarity=0.230 Sum_probs=62.6
Q ss_pred cccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChh-----H-HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360 30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----L-EKETGAKFEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 30 ~~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-----~-~~~~g~~~~~~l~ell~~aDiVvl~lp~ 102 (240)
.|.+|+..+++|+|+ |.||..+|+.|.+.+......-|...... . -.+.|-....+++..+.+.|+++-...
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs- 239 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS- 239 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence 467899999999996 99999999999998887666554322111 1 112333333455544555555444332
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
..+...|+.+ .+|||+++||-++..
T Consensus 240 -~~~g~~I~pq---~lkpg~~ivD~g~P~ 264 (351)
T COG5322 240 -MPKGVEIFPQ---HLKPGCLIVDGGYPK 264 (351)
T ss_pred -cCCCceechh---hccCCeEEEcCCcCc
Confidence 1234556655 479999999998665
No 315
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.83 E-value=0.0084 Score=50.66 Aligned_cols=92 Identities=27% Similarity=0.269 Sum_probs=61.9
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-c----CCHHhh-----cCcCCEEEEcCCCC
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-E----EDLDTM-----LPKCDIVVVNTPLT 103 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~----~~l~el-----l~~aDiVvl~lp~~ 103 (240)
..|.+|.|.|.|.+|+.+++.++..|.+|++.++++...+.+...|... . .+..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 3688999999999999999999999999999988654444444444321 1 111111 24578888777631
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~srg 130 (240)
. .....++.|+++..+++++..
T Consensus 213 ~-----~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 213 E-----TLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred H-----HHHHHHHhcccCCEEEEEccC
Confidence 1 223456677888888887744
No 316
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.83 E-value=0.0036 Score=59.23 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=71.7
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHhc--Cceec--CCHHhhcCcCCEEEEc--CCCC-
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET--GAKFE--EDLDTMLPKCDIVVVN--TPLT- 103 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~~--g~~~~--~~l~ell~~aDiVvl~--lp~~- 103 (240)
++.+++|.|+|+|..|.++|+.|+..|++|.++|...... ...... |+... ....+.+.++|+|+.. .|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~ 83 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE 83 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence 3568999999999999999999999999999999654221 122233 33321 1124556789999886 3322
Q ss_pred ----hhh-------hhccc-HHHHcc-C--------CCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 104 ----EKT-------RGMFD-KDRIAK-M--------KKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 104 ----~~t-------~~~i~-~~~l~~-m--------k~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
|.. ..++. .+.+.. + ++..+-|--+-|+.=...-+.+.|++....
T Consensus 84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 211 12221 122211 2 223455555668887888888888765443
No 317
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.83 E-value=0.0013 Score=56.80 Aligned_cols=93 Identities=20% Similarity=0.182 Sum_probs=60.1
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----------------------HHHhc--Cc--ee-
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET--GA--KF- 82 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~--g~--~~- 82 (240)
..|++++|+|||+|.+|..+++.|...|. ++.++|....... ...+. .+ ..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999999999999999887 5888876531110 00111 11 10
Q ss_pred ---c--CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 83 ---~--~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
. .+.+++++++|+|+.++- +.+++..+++...+. +..+|..+
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~---~ip~v~~~ 154 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAA---KKPLVSGA 154 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHh---CCEEEEee
Confidence 1 123467888998888874 556677676544433 34466654
No 318
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.81 E-value=0.0058 Score=58.46 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=47.7
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCcee--cCCHHhh-cCcCCEEEEcCCC
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKF--EEDLDTM-LPKCDIVVVNTPL 102 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~--~~~l~el-l~~aDiVvl~lp~ 102 (240)
++.++++.|+|.|.+|++++..|...|++|++++|+....+.. ...+... ..++.+. ...+|+|+.++|.
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v 449 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV 449 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC
Confidence 5789999999999999999999999999999999864332222 2222211 1222222 2356788877774
No 319
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.80 E-value=0.069 Score=48.30 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=34.0
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~ 68 (240)
..|..++|.|||+|.+|..+|+.|...|. ++.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 79999875
No 320
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=96.80 E-value=0.0092 Score=55.47 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=65.1
Q ss_pred ccCCCeEEEEcc---ChHHHHHHHHhccC-CCEEEEEcCCCC-ChhH----HHhcC--ceecCCHHhhcCcCCEEEEcCC
Q 026360 33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM-DPQL----EKETG--AKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~-G~~V~~~d~~~~-~~~~----~~~~g--~~~~~~l~ell~~aDiVvl~lp 101 (240)
.+.|++|+++|- +++.++++..+..+ |++|.+..|... ..+. +...| +...+++++.++++|+|....-
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 388999999997 59999999998876 999999987543 1121 22234 4456899999999999988542
Q ss_pred CChh----------hhhcccHHHHcc-CCCCCEEEEc
Q 026360 102 LTEK----------TRGMFDKDRIAK-MKKGVLIVNN 127 (240)
Q Consensus 102 ~~~~----------t~~~i~~~~l~~-mk~gailIN~ 127 (240)
..+. ....++.+.++. .|+++++..+
T Consensus 318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 1110 012346666666 6666666554
No 321
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.77 E-value=0.012 Score=53.10 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=66.6
Q ss_pred ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh--hH-------HHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360 33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP--QL-------EKETG--AKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~-------~~~~g--~~~~~~l~ell~~aDiVvl~ 99 (240)
.+.|++|+++|-+ ++.++++..+..+|++|.+..|....+ +. ++..| +...+++++.++++|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999975 799999999999999999998754211 11 12234 44567999999999999886
Q ss_pred CC----C-Ch---h-----hhhcccHHHHccC-CCCCEEEEcC
Q 026360 100 TP----L-TE---K-----TRGMFDKDRIAKM-KKGVLIVNNA 128 (240)
Q Consensus 100 lp----~-~~---~-----t~~~i~~~~l~~m-k~gailIN~s 128 (240)
.= . .+ + ...-++.+.++.. +++++|..+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 41 0 00 1 1123566777764 6777777664
No 322
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.77 E-value=0.008 Score=52.46 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=61.1
Q ss_pred CeEEEEc-cChHHHHHHHHhcc-CCCEEE-EEcCCCC-C-hhHHHh------cCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 37 KTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKM-D-PQLEKE------TGAKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 37 ~~vgIIG-~G~iG~~~A~~l~~-~G~~V~-~~d~~~~-~-~~~~~~------~g~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
.+|+|+| +|.||+.+++.+.. -++++. ++|+... . ...... .|+..+++++++...+|+|+.+.| |+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~--p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT--PE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC--hH
Confidence 4899999 69999999998875 588855 4674321 1 111111 345556788888667999999986 32
Q ss_pred hhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCc
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHI 147 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i 147 (240)
...- .....++.|.-+|-...|--. +.+.|.++.++..+
T Consensus 80 ~~~~---~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~ 119 (266)
T TIGR00036 80 GVLN---HLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGI 119 (266)
T ss_pred HHHH---HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCc
Confidence 2211 222234444444443345322 23344555555443
No 323
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.74 E-value=0.0016 Score=51.31 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=44.8
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCC--CEEEEEcCCCCChh-HHHh-------cC--ceecCCHHhhcCcCCEEEEcCC
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------TG--AKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~-~~~~-------~g--~~~~~~l~ell~~aDiVvl~lp 101 (240)
+||+|||. |.+|..+|..|...+ -++..+|+.....+ .+.+ .+ .....+..+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 58999999 999999999887554 57999998642111 1111 11 1222355677899999999873
No 324
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.74 E-value=0.021 Score=50.10 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=104.5
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccC----CC-------EEEEEcCCCC------Ch-----hHHHhcCceecCCHHh
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM------DP-----QLEKETGAKFEEDLDT 88 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~----G~-------~V~~~d~~~~------~~-----~~~~~~g~~~~~~l~e 88 (240)
+..|.+.+|.|.|.|.-|..+|+.+... |. +++.+|+... .. ..++...-....++.|
T Consensus 20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e 99 (279)
T cd05312 20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE 99 (279)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence 4568899999999999999999998776 77 6888887631 11 1111111012358999
Q ss_pred hcC--cCCEEEEcCCCChhhhhcccHHHHccCC---CCCEEEEcCCCcccCHHHHHHHHH--hCC-ccEEEeeCCCCCCC
Q 026360 89 MLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGH-IAGYSGDVWNPQPA 160 (240)
Q Consensus 89 ll~--~aDiVvl~lp~~~~t~~~i~~~~l~~mk---~gailIN~srg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EP~ 160 (240)
+++ +.|+++=+.- ..++++++.++.|. +.++|.=.|......|..=.++.+ +|+ |.+.+...-+.+..
T Consensus 100 ~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~ 175 (279)
T cd05312 100 VVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYN 175 (279)
T ss_pred HHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeC
Confidence 999 8898865441 23789999999998 899999999887644444444444 355 54443221111111
Q ss_pred CCCCCCCCCCCeEEcCCCCCCcHHHH-----HHhhhhHHHHHHHHHHHccC
Q 026360 161 PKDHPWRYMPNQAMTPHVSGTTIDAQ-----VIVHFFPVFMRLFTSFLSHK 206 (240)
Q Consensus 161 ~~~~~l~~~~nv~~TPH~a~~t~~~~-----~~~~~~~~~~~~~~~~~~g~ 206 (240)
.....--+..|+++-|=++-....+. ..|.. .+.+-|..+..-+
T Consensus 176 Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~--aAA~aLA~~~~~~ 224 (279)
T cd05312 176 GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFL--AAAEALASLVTDE 224 (279)
T ss_pred CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHH--HHHHHHHHhCCcc
Confidence 11122235678999997754333221 23333 4556666665543
No 325
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.73 E-value=0.0048 Score=57.83 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=73.8
Q ss_pred cCCCeEEEEccChHHHH-HHHHhccCCCEEEEEcCCCCCh-hHHHhcCceec-CCHHhhcCcCCEEEEcC--C-CChhhh
Q 026360 34 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFE-EDLDTMLPKCDIVVVNT--P-LTEKTR 107 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~-~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~-~~l~ell~~aDiVvl~l--p-~~~~t~ 107 (240)
..++++.|+|+|..|.+ +|+.|+..|++|.++|...... +...+.|+... ....+.+.++|+|+..- | ..|...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 46789999999999999 7999999999999999754321 22334466542 12234567899888763 2 222221
Q ss_pred -------hcccH-HHHccC-CC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 108 -------GMFDK-DRIAKM-KK-GVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 108 -------~~i~~-~~l~~m-k~-gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
.++.+ +++..+ ++ ..+-|.-+.|+.=...-+.+.|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 23433 333333 32 35566666788888888888887654
No 326
>PRK11579 putative oxidoreductase; Provisional
Probab=96.72 E-value=0.0048 Score=55.59 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=45.2
Q ss_pred CeEEEEccChHHHH-HHHHhcc-CCCEEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--cCCEEEEcCCCC
Q 026360 37 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLT 103 (240)
Q Consensus 37 ~~vgIIG~G~iG~~-~A~~l~~-~G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~--~aDiVvl~lp~~ 103 (240)
.++||||+|.||+. .+..++. -++++. ++|+++.. ..... +...+++++++++ +.|+|++++|..
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~ 75 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK--VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND 75 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH--HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence 48999999999985 5665554 378866 46665321 12223 3445679999996 579999999954
No 327
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.72 E-value=0.011 Score=54.78 Aligned_cols=89 Identities=25% Similarity=0.298 Sum_probs=62.1
Q ss_pred ccCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360 33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 33 ~l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~ 102 (240)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||..... .... .....++++.++++|+|+++++.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~-~~~~--~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEE-EVKG--LPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChh-hhhh--cccCCCHHHHHhCCCEEEEecCC
Confidence 478999999996 4467789999999999999999864222 2222 22246888999999999999974
Q ss_pred ChhhhhcccHHHHc-cCCCCCEEEEc
Q 026360 103 TEKTRGMFDKDRIA-KMKKGVLIVNN 127 (240)
Q Consensus 103 ~~~t~~~i~~~~l~-~mk~gailIN~ 127 (240)
. +.+. ++-+.+. .|+ ..+++|.
T Consensus 387 ~-~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 D-EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred H-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 3 3333 3333333 354 4577774
No 328
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.72 E-value=0.0059 Score=54.27 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=60.5
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-C----CH---HhhcC--cCCEEEEcCCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----DL---DTMLP--KCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~----~l---~ell~--~aDiVvl~lp~~ 103 (240)
.|.+|.|+|.|.+|..+++.++..|.+ |++.++++...+.++++|+..+ . +. .++.. ..|+++-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 489999999999999999999999999 9998876655566666675321 1 11 12222 467777766521
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
. .....+..++++..++.++
T Consensus 243 -~----~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 243 -A----ARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred -H----HHHHHHHHhhcCCEEEEEc
Confidence 1 1124456677777777766
No 329
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.70 E-value=0.013 Score=53.02 Aligned_cols=112 Identities=18% Similarity=0.259 Sum_probs=65.6
Q ss_pred CeEEEEccChHHHHHHHHhccC----------CCEEE-EEcCCC-------CChhHH----HhcCc-e------ecCCHH
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVK-------MDPQLE----KETGA-K------FEEDLD 87 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~----------G~~V~-~~d~~~-------~~~~~~----~~~g~-~------~~~~l~ 87 (240)
.+|||+|+|.||+.+++.+... +.+|. ++|++. ...+.. ...+. . ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999998654 56655 445431 111111 11121 1 123778
Q ss_pred hhc--CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHHHHHhCCcc
Q 026360 88 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA 148 (240)
Q Consensus 88 ell--~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~aL~~g~i~ 148 (240)
+++ .+.|+|+.++|....+...-..-....++.|.-+|....+.+ ...++|.++.++.+..
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 887 468999999985433211111122344566666666544333 2456788887776664
No 330
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.69 E-value=0.0083 Score=55.71 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=59.9
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--Cceec----CCHH----hhcCcCCEEEEcCCCC
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFE----EDLD----TMLPKCDIVVVNTPLT 103 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~~~----~~l~----ell~~aDiVvl~lp~~ 103 (240)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.++...+...+. ++... .+.+ .-++++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 457899999999999999999999999999999876443333332 33211 1222 2357899999888865
Q ss_pred hhhhhcccHHHHccCCCCCEEEEc
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNN 127 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~ 127 (240)
..+ ++.....+.+.+..+++-+
T Consensus 309 ~~n--~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EAN--ILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HHH--HHHHHHHHHhCCCeEEEEE
Confidence 432 3323333445555455443
No 331
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.68 E-value=0.0055 Score=57.60 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=72.9
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-----hHHHhcCceecC-CHHhhcCcCCEEEEcC---C
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEE-DLDTMLPKCDIVVVNT---P 101 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~-~l~ell~~aDiVvl~l---p 101 (240)
+..+.++++.|||.|.+|.++|..|+..|++|+++|...... +..++.|+.... .-.+....+|+|+++. |
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 345789999999999999999999999999999999654211 223345765431 1112445799998876 3
Q ss_pred CChhh-----hh--cccH-HHH-ccCCC----CCEEEEcCCCcccCHHHHHHHHHhC
Q 026360 102 LTEKT-----RG--MFDK-DRI-AKMKK----GVLIVNNARGAIMDTQAVVDACSSG 145 (240)
Q Consensus 102 ~~~~t-----~~--~i~~-~~l-~~mk~----gailIN~srg~~vd~~aL~~aL~~g 145 (240)
.++.. .+ ++.+ +++ ..+.+ ..+-|--+.|+.=...-+...|+..
T Consensus 91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence 33321 11 2222 332 23322 2455666678887777788888763
No 332
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.68 E-value=0.019 Score=49.72 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=102.6
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCC-----------EEEEEcCCCC----C--h-hHHHh---c--CceecCCHH
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-----------NLLYHDRVKM----D--P-QLEKE---T--GAKFEEDLD 87 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-----------~V~~~d~~~~----~--~-~~~~~---~--g~~~~~~l~ 87 (240)
+.+|.+.+|.|.|.|..|..+|+.+...+. +++.+|+... . . +..+. + .-....++.
T Consensus 20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ 99 (254)
T cd00762 20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE 99 (254)
T ss_pred CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence 456889999999999999999999887654 5888887631 0 0 11111 1 111235899
Q ss_pred hhcC--cCCEEEEcCCCChhhhhcccHHHHccCC---CCCEEEEcCCCcccCHHHHHHHHHh--C-CccEEEeeCCCCCC
Q 026360 88 TMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACSS--G-HIAGYSGDVWNPQP 159 (240)
Q Consensus 88 ell~--~aDiVvl~lp~~~~t~~~i~~~~l~~mk---~gailIN~srg~~vd~~aL~~aL~~--g-~i~ga~lDV~~~EP 159 (240)
|+++ +.|+++=..- ..+.+.++.++.|. +.++|.=.|......|-.=.++.+- | .|.+-+.--++.+-
T Consensus 100 eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~ 175 (254)
T cd00762 100 DAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL 175 (254)
T ss_pred HHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc
Confidence 9999 8998865431 24789999999998 8999999998877444444444443 3 34433332222111
Q ss_pred CCCCCCCCCCCCeEEcCCCCCCcHHHH-----HHhhhhHHHHHHHHHHHcc
Q 026360 160 APKDHPWRYMPNQAMTPHVSGTTIDAQ-----VIVHFFPVFMRLFTSFLSH 205 (240)
Q Consensus 160 ~~~~~~l~~~~nv~~TPH~a~~t~~~~-----~~~~~~~~~~~~~~~~~~g 205 (240)
.......-+..|+++-|=++-....++ ..|.. .+.+-|..+..-
T Consensus 176 ~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~--aAA~aLA~~v~~ 224 (254)
T cd00762 176 NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFL--SAAEAIASSVTE 224 (254)
T ss_pred CCceeecccccceeeccchhhhhHhhcCeECCHHHHH--HHHHHHHhhCCh
Confidence 111122236678999997754333322 22333 445556555543
No 333
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.67 E-value=0.0075 Score=54.54 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=56.1
Q ss_pred CeEEEEcc-ChHHHHHHHHhccC-CCEEEE-EcCCCCChhHHHhcC-ce-----ecCCHHh-hcCcCCEEEEcCCCChhh
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETG-AK-----FEEDLDT-MLPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~-G~~V~~-~d~~~~~~~~~~~~g-~~-----~~~~l~e-ll~~aDiVvl~lp~~~~t 106 (240)
++|+|+|. |.+|+.+++.+... ++++.. .++...........+ .. .+.++++ ...++|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~- 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS- 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence 68999997 99999999999876 677655 453322111111111 10 1223332 45789999999994322
Q ss_pred hhcccHHHHccCCCCCEEEEcCCCcccCH
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNARGAIMDT 135 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~srg~~vd~ 135 (240)
..++ .+ .++.|..+||.|..--.+.
T Consensus 82 ~~~v-~~---a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLA-PQ---LLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHH-HH---HHhCCCEEEECCcccCCCC
Confidence 2221 11 2356899999996554543
No 334
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.65 E-value=0.003 Score=51.01 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=47.4
Q ss_pred EEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCC
Q 026360 39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 39 vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp~~ 103 (240)
|.|+|. |.+|+.+++.|...|++|+++.|++.+.+. ..+++. .+++.+.++.+|.|+.+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 678995 999999999999999999999997644333 233321 124457788999999998743
No 335
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.64 E-value=0.0039 Score=56.85 Aligned_cols=62 Identities=21% Similarity=0.453 Sum_probs=44.7
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee---cC---CHHhhcCcCCEEEE
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF---EE---DLDTMLPKCDIVVV 98 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~---~~---~l~ell~~aDiVvl 98 (240)
.++|||||-|..|+.++..++.+|++|+++|+++..+.... ..... .. .+.++++.+|+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~-ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV-ADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh-CceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 47899999999999999999999999999998654322111 11111 12 35667888998764
No 336
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.63 E-value=0.0074 Score=55.16 Aligned_cols=88 Identities=24% Similarity=0.416 Sum_probs=61.2
Q ss_pred cCCCeEEEEccC----------hHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCC
Q 026360 34 LEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 34 l~g~~vgIIG~G----------~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~ 102 (240)
|.||+|||.|+- .-...++..|+..|.+|.+|||... ...... .++....+++++++.||+++++..
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~-~~~~~~~~~~~~~~~~~~~~~~aDaivi~te- 385 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM-ENAFRNFPDVELESDAEEALKGADAIVINTE- 385 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh-HHHHhcCCCceEeCCHHHHHhhCCEEEEecc-
Confidence 899999999962 4567789999999999999998532 222221 136778899999999999999875
Q ss_pred ChhhhhcccHHHHccCCCCCEEEE
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVN 126 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN 126 (240)
.++-+.+ +-+.+ .||. .++++
T Consensus 386 w~ef~~~-d~~~~-~m~~-~~v~D 406 (414)
T COG1004 386 WDEFRDL-DFEKL-LMKT-PVVID 406 (414)
T ss_pred HHHHhcc-Chhhh-hccC-CEEEe
Confidence 2333332 33333 4553 44554
No 337
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.63 E-value=0.012 Score=52.76 Aligned_cols=69 Identities=22% Similarity=0.149 Sum_probs=46.2
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccC--CCEEEEEcCCCCChhHHH------hcCceecC---CHHhhcCcCCEEEEcC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK------ETGAKFEE---DLDTMLPKCDIVVVNT 100 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~------~~g~~~~~---~l~ell~~aDiVvl~l 100 (240)
-++.+||+|||. |.||..+|..+... ..++..+|......+..+ ...+.... +..+.++++|+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 357789999999 99999999998844 457999998322211111 01122221 2257899999999886
Q ss_pred C
Q 026360 101 P 101 (240)
Q Consensus 101 p 101 (240)
-
T Consensus 85 G 85 (321)
T PTZ00325 85 G 85 (321)
T ss_pred C
Confidence 4
No 338
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.60 E-value=0.014 Score=52.95 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=70.6
Q ss_pred CCeEEEEccChHHHHHHHHhccC--CCEEE-EEcCCCCCh-hHHHhcCceecCCHHhhcCcCCEEEEcCCCC-h-hhhhc
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-E-KTRGM 109 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~--G~~V~-~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~-~-~t~~~ 109 (240)
-.+|||||. .+|+..+..++.. +.++. ++|+++... +.++.+|+..++++++++++.|++++++|.+ + .+..-
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e 81 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSA 81 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHH
Confidence 368999999 6899999888765 47755 567765433 3455678776789999999999999998742 2 22222
Q ss_pred ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360 110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga 150 (240)
+. .+.++.|.-++.=---..-+.++|+++.++.++...
T Consensus 82 ~a---~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 82 LA---RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HH---HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 22 223344432322111123566778888888777644
No 339
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.59 E-value=0.016 Score=52.66 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=50.4
Q ss_pred ccCCCeEEEEccC--------hHHHHHHHHhccCCCEEEEEcCCCC--ChhH-------HHhcCc--eecCCHHhhcCcC
Q 026360 33 DLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETGA--KFEEDLDTMLPKC 93 (240)
Q Consensus 33 ~l~g~~vgIIG~G--------~iG~~~A~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g~--~~~~~l~ell~~a 93 (240)
.|+|++|+|+|.| ++.++++..+..+|++|.+..|... ..+. +++.|. ...+++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999743 5668888899999999999987632 2221 123343 4568999999999
Q ss_pred CEEEEcC
Q 026360 94 DIVVVNT 100 (240)
Q Consensus 94 DiVvl~l 100 (240)
|+|..-.
T Consensus 247 Dvvyt~~ 253 (357)
T TIGR03316 247 DIVYPKS 253 (357)
T ss_pred CEEEECC
Confidence 9998863
No 340
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.59 E-value=0.0044 Score=48.70 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=49.5
Q ss_pred EEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccC
Q 026360 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118 (240)
Q Consensus 39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~m 118 (240)
+-|+|.|.+|+++++.++..|++|+++|+++.. +..++-+ .+.+. .... +.+ .+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~------------------~~~~~~~-~~~~~----~~~~--~~~-~~ 54 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER------------------FPEADEV-ICIPP----DDIL--EDL-EI 54 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------------TTSSEE-ECSHH----HHHH--HHC--S
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc------------------cCCCCcc-EecCh----HHHH--hcc-CC
Confidence 468999999999999999999999999986421 1233332 22221 1110 111 35
Q ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151 (240)
Q Consensus 119 k~gailIN~srg~~vd~~aL~~aL~~g~i~ga~ 151 (240)
.+++.+| ++++.-.|.+.|.++|++ ...+.+
T Consensus 55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG 85 (136)
T PF13478_consen 55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIG 85 (136)
T ss_dssp -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence 5666665 788888888888888876 344343
No 341
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.57 E-value=0.0073 Score=56.74 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=60.5
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-hHHHhcC-ceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETG-AKFE--EDLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g-~~~~--~~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
.+|+|++|.|||-|.+|..=++.|..+|++|+++.+...+. ......| +... .-.++.++.+++|+.++.+.+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~--- 84 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA--- 84 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence 47999999999999999998999999999999998753211 1111111 2211 112355788998888876433
Q ss_pred hcccHHHHccCCCCCEEEEcC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~s 128 (240)
+|.+.....+...+++|++
T Consensus 85 --~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 --VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HhHHHHHHHHHcCcEEEEC
Confidence 3444444455555677764
No 342
>PRK10206 putative oxidoreductase; Provisional
Probab=96.57 E-value=0.0048 Score=55.73 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=45.1
Q ss_pred eEEEEccChHHHH-HHHHh-cc-CCCEEE-EEcCCCCChhHHHhcC-ceecCCHHhhcC--cCCEEEEcCCCC
Q 026360 38 TVGTVGCGRIGKL-LLQRL-KP-FNCNLL-YHDRVKMDPQLEKETG-AKFEEDLDTMLP--KCDIVVVNTPLT 103 (240)
Q Consensus 38 ~vgIIG~G~iG~~-~A~~l-~~-~G~~V~-~~d~~~~~~~~~~~~g-~~~~~~l~ell~--~aDiVvl~lp~~ 103 (240)
++||||+|.+++. .+..+ .. -+++|. ++|+++...+.....+ ...+++++++++ +.|+|++++|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 7999999998753 34444 32 367765 5787654333344444 455678999996 579999999954
No 343
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.56 E-value=0.027 Score=49.77 Aligned_cols=105 Identities=14% Similarity=0.195 Sum_probs=75.9
Q ss_pred CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhh---------
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT--------- 106 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t--------- 106 (240)
|++++|||--.--..+++.|...|++|..+.-...... + .|+....+.++.++++|+|++-+|.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG-F--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc-c--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 68999999988888999999999999888764221111 1 15666656677799999999999965542
Q ss_pred -hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360 107 -RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148 (240)
Q Consensus 107 -~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ 148 (240)
+-.++++.++.++++++ +-+| ++..++-++.++..+.
T Consensus 78 ~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK 115 (287)
T ss_pred CCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence 22256889999998664 3444 4556666677877776
No 344
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.55 E-value=0.007 Score=53.47 Aligned_cols=87 Identities=13% Similarity=0.016 Sum_probs=56.6
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
.|+++.|+|.|.+|...++.++.+|++ |.+.++++...+.+....+ .+.-++.-...|+|+-++... . . ...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~-~---~-~~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDP-S---L-IDT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCH-H---H-HHH
Confidence 578899999999999999999999998 5556664433322322221 211111223578888887621 1 1 235
Q ss_pred HHccCCCCCEEEEcC
Q 026360 114 RIAKMKKGVLIVNNA 128 (240)
Q Consensus 114 ~l~~mk~gailIN~s 128 (240)
.++.++++..++.+|
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 677789998888876
No 345
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.55 E-value=0.0026 Score=48.15 Aligned_cols=100 Identities=22% Similarity=0.331 Sum_probs=59.1
Q ss_pred ccChHHHHHHHHhccC----CCEEE-EEcCC--CCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhcccHH
Q 026360 43 GCGRIGKLLLQRLKPF----NCNLL-YHDRV--KMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 43 G~G~iG~~~A~~l~~~----G~~V~-~~d~~--~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
|+|.||+.+++.+... +++|. +++++ ..........+.....+++++++ ..|+|+=|.+. +... .-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVA----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHH----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHH----HH
Confidence 8999999999999865 57755 45665 11111111223345579999998 89999999663 2222 22
Q ss_pred HHccCCCCCEEEEcCCCccc---CHHHHHHHHHhCCc
Q 026360 114 RIAKMKKGVLIVNNARGAIM---DTQAVVDACSSGHI 147 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~v---d~~aL~~aL~~g~i 147 (240)
..+.++.|.-+|..+.+.+. .-+.|.++.++++.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence 34456788889999988887 33344455554443
No 346
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=96.54 E-value=0.017 Score=52.26 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=50.4
Q ss_pred ccCCCeEEEEcc---ChHHHHHHHHhc-cCCCEEEEEcCCCC--ChhH---HHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360 33 DLEGKTVGTVGC---GRIGKLLLQRLK-PFNCNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~~A~~l~-~~G~~V~~~d~~~~--~~~~---~~~~g--~~~~~~l~ell~~aDiVvl~ 99 (240)
.+.|++|+++|= +++.++++..+. .+|++|.+..|... +.+. +...| +...+++++.++++|+|...
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 589999999996 689999998766 45999999987542 2121 12334 44567999999999999884
No 347
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.54 E-value=0.0054 Score=54.59 Aligned_cols=68 Identities=26% Similarity=0.341 Sum_probs=49.6
Q ss_pred CCeEEEEccChHHH-HHHHHhccCC--CE-EEEEcCCCCCh-hHHHhcCce-ecCCHHhhcCc--CCEEEEcCCCC
Q 026360 36 GKTVGTVGCGRIGK-LLLQRLKPFN--CN-LLYHDRVKMDP-QLEKETGAK-FEEDLDTMLPK--CDIVVVNTPLT 103 (240)
Q Consensus 36 g~~vgIIG~G~iG~-~~A~~l~~~G--~~-V~~~d~~~~~~-~~~~~~g~~-~~~~l~ell~~--aDiVvl~lp~~ 103 (240)
-.++||||+|.++. ..+..+...+ +. |.++|+++... ..+..+++. .+++++++++. .|+|++++|..
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 35899999997765 5777777765 35 55668876443 345567774 66799999987 58999999954
No 348
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.53 E-value=0.01 Score=52.68 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=56.3
Q ss_pred EEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChhH-HHhc-------C---ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360 39 VGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET-------G---AKFEEDLDTMLPKCDIVVVNTPLTEK 105 (240)
Q Consensus 39 vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~-~~~~-------g---~~~~~~l~ell~~aDiVvl~lp~~~~ 105 (240)
|+|||.|.+|..+|..+...| .++..+|++...... ..++ . +....+ .+.+++||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998877 579999986532211 1110 0 111233 4578999999999753211
Q ss_pred ---h--------hhccc--HHHHccCCCCCEEEEcCC
Q 026360 106 ---T--------RGMFD--KDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 106 ---t--------~~~i~--~~~l~~mk~gailIN~sr 129 (240)
+ ..++. .+.+....|++++++++-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 1 11111 122333458899999983
No 349
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=96.53 E-value=0.024 Score=52.26 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=51.3
Q ss_pred cCCCeEEEEcc-----C---hHHHHHHHHhccCCCEEEEEcCCCC--ChhH-------HHhcC--ceecCCHHhhcCcCC
Q 026360 34 LEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKCD 94 (240)
Q Consensus 34 l~g~~vgIIG~-----G---~iG~~~A~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g--~~~~~~l~ell~~aD 94 (240)
+.|++|+|+|- | ++.++++..+..+|++|.+..|..- .++. ++..| +...+++++.++++|
T Consensus 185 l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aD 264 (395)
T PRK07200 185 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDAD 264 (395)
T ss_pred cCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCC
Confidence 78899999985 5 6779999999999999999998632 2221 22234 445679999999999
Q ss_pred EEEEcC
Q 026360 95 IVVVNT 100 (240)
Q Consensus 95 iVvl~l 100 (240)
+|..-.
T Consensus 265 vVYtd~ 270 (395)
T PRK07200 265 IVYPKS 270 (395)
T ss_pred EEEEcC
Confidence 998863
No 350
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=96.52 E-value=0.009 Score=53.90 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCceec---CC---HHhhcCcCCEEEEcCCCChhhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~---~~---l~ell~~aDiVvl~lp~~~~t~ 107 (240)
.|.++.|.|.|.+|..+++.++..|.+|++.+.+......+ +.+|+... .+ +.+.....|+++-+++...
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~--- 256 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH--- 256 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH---
Confidence 68899999999999999999999999988887654333222 34665321 11 2223334688887775221
Q ss_pred hcccHHHHccCCCCCEEEEcC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~s 128 (240)
.....++.++++..++.++
T Consensus 257 --~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 257 --PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred --HHHHHHHHhccCCEEEEEC
Confidence 1234566778888888876
No 351
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.50 E-value=0.0073 Score=51.95 Aligned_cols=92 Identities=23% Similarity=0.212 Sum_probs=59.7
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----------------------HHHhc--Cc--ee-
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET--GA--KF- 82 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~--g~--~~- 82 (240)
..|++++|.|+|+|.+|..+|+.|...|. +++++|.+..... ...+. .+ ..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 46899999999999999999999999887 5778876532110 00111 11 11
Q ss_pred ---c--CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEc
Q 026360 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN 127 (240)
Q Consensus 83 ---~--~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~ 127 (240)
. .+.+++++++|+|+.++- +.+++..+++...+. +..+|..
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~---~ip~v~~ 145 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA---KVPLVSG 145 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEE
Confidence 1 234567888998888774 566777776554433 3335543
No 352
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.50 E-value=0.0094 Score=50.73 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=58.6
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHhcCceec-CCH-HhhcCcCCEEEEcCCCChhhh
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE-EDL-DTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~-~~l-~ell~~aDiVvl~lp~~~~t~ 107 (240)
.+++|++|.|||.|.+|..=++.|..+|++|+++++...+. .....-.++.. .+. .+.++.+++|+.++... +
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~-- 97 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-K-- 97 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-H--
Confidence 46789999999999999998999999999999999864221 11111112211 011 23467899998888632 2
Q ss_pred hcccHHHHccCCCCCEEEEcC
Q 026360 108 GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailIN~s 128 (240)
+|.......+.-.+++|++
T Consensus 98 --vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 98 --LNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred --HHHHHHHHHHHcCCeEEEc
Confidence 3444444445445566653
No 353
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.47 E-value=0.013 Score=54.54 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=63.2
Q ss_pred CeEEEEccChHHHHHHHHhccC----------CCEEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT 103 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~----------G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~ 103 (240)
.+|||+|+|.||+.+++.+... +.+|. +++++..........+....+++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 5799999999999998877432 34544 4566543222111122344568999985 479999888643
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCcc
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 148 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i~ 148 (240)
...... ..+.++.|.-+|...-+... .-+.|.++.++.+..
T Consensus 84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 221111 22345566555544332222 336677777776664
No 354
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.46 E-value=0.008 Score=53.93 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=39.3
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
.|.+|.|.|.|.+|..+++.++..|.+|++.++++...+.++++|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 4889999999999999999999999999999887655666666665
No 355
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=96.46 E-value=0.013 Score=52.17 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=60.7
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCC------HHhhcCcCCEEEEcCCCChhhhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED------LDTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~------l~ell~~aDiVvl~lp~~~~t~~ 108 (240)
.|.++.|.|.|.+|+.+++.++++|.+|++.+++....+.+.++|+..+-+ .++.-...|+++-+.+..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~----- 243 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS----- 243 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence 478999999999999999999999999999988765555555566432111 112234567777776622
Q ss_pred cccHHHHccCCCCCEEEEcC
Q 026360 109 MFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN~s 128 (240)
....+.++.++++..+++++
T Consensus 244 ~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 244 HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred chHHHHHHHhcCCCEEEEEe
Confidence 11234566677777777775
No 356
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.45 E-value=0.0043 Score=55.12 Aligned_cols=53 Identities=23% Similarity=0.163 Sum_probs=45.6
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCCHH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLD 87 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ 87 (240)
.|.+++|.|+|.+|.++++.+++.|+ +++++|.++.+-+.++++|+..+-+..
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence 58999999999999999999999998 599999988777788888886543444
No 357
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.43 E-value=0.01 Score=48.95 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=48.0
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----cCceecCCHHhhcCcCCEEEEcCC
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell~~aDiVvl~lp 101 (240)
+||+|||. |.+|+.+++-++..|++|+++-|++.+....+. ..+...+++.+.+..-|+|+.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 68999995 999999999999999999999987644332111 122222344578889999998864
No 358
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.40 E-value=0.013 Score=51.45 Aligned_cols=65 Identities=22% Similarity=0.200 Sum_probs=45.8
Q ss_pred CCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~g~~~~~~l~ell~~aDiVvl~lp~ 102 (240)
++++.|+|.|..+++++..|...|+ +|++++|+..+.+.. ...+.....++ ....+|+||.++|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcc
Confidence 5789999999999999999999998 499999976433322 22332211111 12458999999984
No 359
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.38 E-value=0.0031 Score=57.64 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=43.4
Q ss_pred EEEEccChHHHHHHHHhccCC-C-EEEEEcCCCCChhHHHh----cCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360 39 VGTVGCGRIGKLLLQRLKPFN-C-NLLYHDRVKMDPQLEKE----TGAKF-------EEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 39 vgIIG~G~iG~~~A~~l~~~G-~-~V~~~d~~~~~~~~~~~----~g~~~-------~~~l~ell~~aDiVvl~lp 101 (240)
|+|+|.|.+|+.+++.|...+ . +|++.|++....+.... ..+.. ..+++++++++|+|+.|+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g 76 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAG 76 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCc
Confidence 689999999999999998775 4 79999997644333221 11211 1236788999999999997
No 360
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.37 E-value=0.012 Score=53.35 Aligned_cols=89 Identities=24% Similarity=0.292 Sum_probs=64.5
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHh-cCceecCCH-H--------hhc--CcCCEEEEcCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFEEDL-D--------TML--PKCDIVVVNTP 101 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~~~l-~--------ell--~~aDiVvl~lp 101 (240)
.+.++.|+|.|.||...+..++.+|. +|++.|+++.+.+.+++ .+.....+. + ++. ..+|+++-|+.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 34499999999999999999999997 47788988777777777 454432221 1 222 34899999987
Q ss_pred CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 102 LTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 102 ~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
++. .-.+.++..+++..++.+|
T Consensus 248 -~~~----~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 248 -SPP----ALDQALEALRPGGTVVVVG 269 (350)
T ss_pred -CHH----HHHHHHHHhcCCCEEEEEe
Confidence 222 1235677789999998887
No 361
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.36 E-value=0.0098 Score=53.85 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=60.7
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-C----CH-Hh---hcC-cCCEEEEcCCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E----DL-DT---MLP-KCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~----~l-~e---ll~-~aDiVvl~lp~~ 103 (240)
.|.+|.|.|.|.+|..+++.++..|+ +|++.++++.+.+.++++|+..+ . ++ ++ +.. ..|+++-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 48899999999999999999999999 59888887666666777776321 1 11 11 111 368887776422
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
+. ....++.++++..++.++
T Consensus 271 ~~-----~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 271 PA-----LETAYEITRRGGTTVTAG 290 (371)
T ss_pred HH-----HHHHHHHHhcCCEEEEEc
Confidence 11 123456677877777775
No 362
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.36 E-value=0.0071 Score=50.42 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=34.0
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 69 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~ 69 (240)
..|.+++|.|+|+|.+|..+++.|...|.. +..+|...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 468999999999999999999999999985 88898653
No 363
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.35 E-value=0.039 Score=51.71 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=74.5
Q ss_pred cCCCeEEEEcc----ChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360 34 LEGKTVGTVGC----GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 34 l~g~~vgIIG~----G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
++-++|+|||. |++|..+.+.++..|+ +|+.+++... .-.|+..+.+++++-...|++++++|. +.+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-----~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~ 78 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-----EILGVKAYPSVLEIPDPVDLAVIVVPA-KYVP 78 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-----ccCCccccCCHHHCCCCCCEEEEecCH-HHHH
Confidence 56789999998 8899999999999887 6888887532 124677777899988889999999993 2233
Q ss_pred hcccHHHHccCCCCCEEE-EcCCCc-----ccCHHHHHHHHHhCCccEEE
Q 026360 108 GMFDKDRIAKMKKGVLIV-NNARGA-----IMDTQAVVDACSSGHIAGYS 151 (240)
Q Consensus 108 ~~i~~~~l~~mk~gailI-N~srg~-----~vd~~aL~~aL~~g~i~ga~ 151 (240)
..+. +..+ .+..+++| .-+-++ .-.++++.+..+++.+.-.+
T Consensus 79 ~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 79 QVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred HHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 3332 3332 34444443 322222 22357888888888777443
No 364
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.35 E-value=0.016 Score=47.26 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=51.1
Q ss_pred eEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCC------------------hh----HHHhc--Ccee--------cC
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMD------------------PQ----LEKET--GAKF--------EE 84 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~------------------~~----~~~~~--g~~~--------~~ 84 (240)
+|+|+|+|.+|..+++.|...|.. +..+|.+... .+ ...+. .++. ..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 589999999999999999999984 8888875311 00 01111 1111 12
Q ss_pred CHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360 85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116 (240)
Q Consensus 85 ~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~ 116 (240)
+++++++++|+|+.++ .+.+++..+.....+
T Consensus 81 ~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~ 111 (174)
T cd01487 81 NLEGLFGDCDIVVEAF-DNAETKAMLAESLLG 111 (174)
T ss_pred hHHHHhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 3457788899888884 456677666555444
No 365
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.33 E-value=0.0088 Score=50.46 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=33.4
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 68 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~ 68 (240)
..|+.++|+|||+|.+|..+|+.|...|.. +.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 468999999999999999999999998885 8888876
No 366
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.32 E-value=0.011 Score=55.66 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=69.7
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hh---HHHhcCcee-cCCHHhhcCcCCEEEEcC--C-CChh
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQ---LEKETGAKF-EEDLDTMLPKCDIVVVNT--P-LTEK 105 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~---~~~~~g~~~-~~~l~ell~~aDiVvl~l--p-~~~~ 105 (240)
+.|++++|+|+|.-|.++|+.|...|++|+++|..... .. ...+.+... .....+.+.++|+||..- | ..|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 56899999999999999999999999999999954321 11 122212111 111235567899988763 3 2222
Q ss_pred h-------hhcccHHH--Hcc-CC-----CCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360 106 T-------RGMFDKDR--IAK-MK-----KGVLIVNNARGAIMDTQAVVDACSSG 145 (240)
Q Consensus 106 t-------~~~i~~~~--l~~-mk-----~gailIN~srg~~vd~~aL~~aL~~g 145 (240)
. ..++.+-. +.. ++ ...+-|.-+.|+.=...-+.+.|+..
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 1 12343322 232 31 23556666678888888888888753
No 367
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.31 E-value=0.037 Score=49.69 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=58.8
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCC---hhHHHh----c-----CceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKE----T-----GAKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~---~~~~~~----~-----g~~~~~~l~ell~~aDiV 96 (240)
++|+|||. |.+|..+|..+...|. ++..+|..... ...+.+ . .+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999998876555 78999974321 111110 0 112223455778999999
Q ss_pred EEcCCCC--h-hhhh--------ccc--HHHHccCC-CCCEEEEcCCCcccCHHH
Q 026360 97 VVNTPLT--E-KTRG--------MFD--KDRIAKMK-KGVLIVNNARGAIMDTQA 137 (240)
Q Consensus 97 vl~lp~~--~-~t~~--------~i~--~~~l~~mk-~gailIN~srg~~vd~~a 137 (240)
+++.-.. + .++. ++. ...+.... |++++|.++ ..+|.-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA 135 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence 9986431 1 1111 110 01222334 588999987 4454444
No 368
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.30 E-value=0.01 Score=52.56 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=47.1
Q ss_pred CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp 101 (240)
++|.|.| .|.+|+.+++.|...|++|.+.+|+..+.......+++. ..++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4789999 599999999999999999999998653322222234332 1345677899999887654
No 369
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.30 E-value=0.013 Score=54.52 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=72.6
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHh--cCceec--CCHHhhcCcCCEEEEcCC---CC
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE--EDLDTMLPKCDIVVVNTP---LT 103 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~--~~l~ell~~aDiVvl~lp---~~ 103 (240)
++.++++.|+|.|.+|.++|+.|...|++|.++|...... ..... .|+... ...++...++|+|+...- ..
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~ 81 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ 81 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence 3578999999999999999999999999999999755332 12222 255432 112344568999888642 22
Q ss_pred hhhh-------hccc-HHHHcc-CC---CCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360 104 EKTR-------GMFD-KDRIAK-MK---KGVLIVNNARGAIMDTQAVVDACSSGHI 147 (240)
Q Consensus 104 ~~t~-------~~i~-~~~l~~-mk---~gailIN~srg~~vd~~aL~~aL~~g~i 147 (240)
|... .++. .+.+.. ++ ...+-|.-+.|+.=...-+...|+....
T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~ 137 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL 137 (445)
T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 3221 1222 233333 22 2355566667888888888888876443
No 370
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.29 E-value=0.0058 Score=44.84 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=43.1
Q ss_pred CCeEEEEccChHHHHHHHHhc-cCCCE-EEEEcCCCCChhHHHhcCceecCCHHhhcCc--CCEEEEcCCC
Q 026360 36 GKTVGTVGCGRIGKLLLQRLK-PFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPL 102 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~-~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDiVvl~lp~ 102 (240)
..++.|+|+|+.|++++.... ..|+. +.++|.++..... .-.|+....+++++.+. .|+-++++|.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-~i~gipV~~~~~~l~~~~~i~iaii~VP~ 72 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-EIGGIPVYGSMDELEEFIEIDIAIITVPA 72 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-EETTEEEESSHHHHHHHCTTSEEEEES-H
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-EECCEEeeccHHHhhhhhCCCEEEEEcCH
Confidence 458999999999999875443 45665 4566665543221 11255545577776665 9999999993
No 371
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.27 E-value=0.015 Score=52.05 Aligned_cols=91 Identities=22% Similarity=0.265 Sum_probs=56.8
Q ss_pred eEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHh--c-----Ccee-c--CCHHhhcCcCCEEEEcCCCC-
Q 026360 38 TVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKE--T-----GAKF-E--EDLDTMLPKCDIVVVNTPLT- 103 (240)
Q Consensus 38 ~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~--~-----g~~~-~--~~l~ell~~aDiVvl~lp~~- 103 (240)
||+|||. |.+|..+|..|...+. ++..+|..+ ....+.+ . .+.. . +++.+.+++||+|+++....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~ 79 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPR 79 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCC
Confidence 6899999 9999999998876554 799999765 2111111 1 1121 1 13467899999999986432
Q ss_pred -h-h--------hhhccc--HHHHccCCCCCEEEEcCC
Q 026360 104 -E-K--------TRGMFD--KDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 104 -~-~--------t~~~i~--~~~l~~mk~gailIN~sr 129 (240)
+ . +..++. .+.+..-.|++++|+++.
T Consensus 80 ~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 80 KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 1 1 111211 123334468999999974
No 372
>PLN02740 Alcohol dehydrogenase-like
Probab=96.27 E-value=0.015 Score=52.97 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=40.1
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCce
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAK 81 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~ 81 (240)
.|.+|.|+|.|.+|..+++.++..|. +|++.++++...+.++++|+.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 245 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT 245 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc
Confidence 58899999999999999999999999 599998876666667777753
No 373
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=96.25 E-value=0.046 Score=42.89 Aligned_cols=97 Identities=14% Similarity=0.251 Sum_probs=69.1
Q ss_pred HHHHHhccCCCEEEEEcCCCC----ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEE
Q 026360 50 LLLQRLKPFNCNLLYHDRVKM----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125 (240)
Q Consensus 50 ~~A~~l~~~G~~V~~~d~~~~----~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI 125 (240)
..++.|...|++|++=.-... +.+.-.+.|+..+++.++++++||+|+-.-|. ..+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p--------~~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPP--------SEEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCC--------CHHHHhhcCCCcEEE
Confidence 456778888999876653321 23344456888887788999999999777663 245678899999998
Q ss_pred EcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360 126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156 (240)
Q Consensus 126 N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~ 156 (240)
-..... ....+++.|.+.++...++|...
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ip 118 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIP 118 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence 877555 58999999999999988887543
No 374
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=96.25 E-value=0.012 Score=51.93 Aligned_cols=89 Identities=22% Similarity=0.170 Sum_probs=62.2
Q ss_pred CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------CCHHhhc-----CcCCEEEEcCCC
Q 026360 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~ell-----~~aDiVvl~lp~ 102 (240)
.|.+|.|.| .|.+|..+++.++..|.+|++.+++....+.++++|+..+ .++.+.+ ...|+++-++..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~ 217 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG 217 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence 588999999 5999999999999999999988876655666666775321 1222222 136777776641
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~sr 129 (240)
+ .+ ...++.++++..+|.++.
T Consensus 218 -~----~~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 218 -E----FS-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred -H----HH-HHHHHHhCcCcEEEEecc
Confidence 1 12 456777888888888763
No 375
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=96.24 E-value=0.0059 Score=54.02 Aligned_cols=95 Identities=22% Similarity=0.272 Sum_probs=69.1
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee--------------cC----------CHHh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--------------EE----------DLDT 88 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--------------~~----------~l~e 88 (240)
...+.++-++|+|-+|-..+-..+..|+-|..+|-.+...+..+..|.+. .. -+.+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999986554333333232211 11 1235
Q ss_pred hcCcCCEEEEcC--CCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 89 MLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 89 ll~~aDiVvl~l--p~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
..++.|+|+.+. |..|. -.++.++..+.||||+++||.+
T Consensus 241 ~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 241 QAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 678899998863 54433 4577889999999999999986
No 376
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.23 E-value=0.014 Score=52.44 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=60.3
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCHH----hhcC--cCCEEEEcCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP--KCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell~--~aDiVvl~lp~ 102 (240)
.|.+|.|.|.|.+|..+++.++..|.+ |++.+++....+.++++|+..+ .+.. ++.. ..|+|+-++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 489999999999999999999999995 8888887666666677775321 1111 1221 36777776642
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
. .+ + ...+..++++..+|.+|
T Consensus 256 ~-~~---~-~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 256 P-ET---Y-KQAFYARDLAGTVVLVG 276 (358)
T ss_pred H-HH---H-HHHHHHhccCCEEEEEC
Confidence 1 11 1 23455677777777776
No 377
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=96.23 E-value=0.012 Score=51.84 Aligned_cols=92 Identities=24% Similarity=0.223 Sum_probs=61.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCce-ecC----CHH--h--hcCcCCEEEEcCCCCh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAK-FEE----DLD--T--MLPKCDIVVVNTPLTE 104 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~-~~~----~l~--e--ll~~aDiVvl~lp~~~ 104 (240)
.|.++.|+|.|.+|+.+++.+++.|++ |++.++++...+.+.+.|+. ... +.. . .-...|+++-+.+..
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~- 237 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP- 237 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence 578999999999999999999999998 78888765444455555542 111 111 0 124578888776521
Q ss_pred hhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~srg~ 131 (240)
....+.++.++++..+++++...
T Consensus 238 ----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 238 ----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred ----HHHHHHHHHHhcCCEEEEEecCC
Confidence 12234566778888888887543
No 378
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.21 E-value=0.011 Score=52.35 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=27.0
Q ss_pred eEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~ 68 (240)
+|.|+|+|.+|..+|+.|...|. +++++|..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999998 47777754
No 379
>PLN02602 lactate dehydrogenase
Probab=96.21 E-value=0.02 Score=52.00 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=57.2
Q ss_pred CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHh-------cC-cee--cCCHHhhcCcCCEEEEcCCCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE-------TG-AKF--EEDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~-------~g-~~~--~~~l~ell~~aDiVvl~lp~~ 103 (240)
+||+|||.|.+|..+|..+...|. ++..+|....... .+.+ .+ ... ..+.++ +++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999998876655 6999998653221 1111 01 111 124444 89999999986432
Q ss_pred --h-hhhh--------ccc--HHHHccCCCCCEEEEcCC
Q 026360 104 --E-KTRG--------MFD--KDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 104 --~-~t~~--------~i~--~~~l~~mk~gailIN~sr 129 (240)
+ .++. ++. .+.+....|++++|+++-
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 1221 110 123344567899999983
No 380
>PLN00106 malate dehydrogenase
Probab=96.20 E-value=0.016 Score=52.10 Aligned_cols=97 Identities=21% Similarity=0.209 Sum_probs=60.0
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCChhHHH--h----cCce---ecCCHHhhcCcCCEEEEcCCC
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEK--E----TGAK---FEEDLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~--~----~g~~---~~~~l~ell~~aDiVvl~lp~ 102 (240)
..+||+|+|. |++|..+|..|...+. ++..+|..+......+ . ..+. ..+++.+.+++||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4579999999 9999999999985444 7999998652211111 0 1111 123457889999999998642
Q ss_pred --Ch-hhhhc-------ccHH---HHccCCCCCEEEEcCCCc
Q 026360 103 --TE-KTRGM-------FDKD---RIAKMKKGVLIVNNARGA 131 (240)
Q Consensus 103 --~~-~t~~~-------i~~~---~l~~mk~gailIN~srg~ 131 (240)
.+ .++.- +-.+ .+....|++++++++-.-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 21 11111 1122 233345889999987543
No 381
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.20 E-value=0.022 Score=51.08 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=60.5
Q ss_pred CCCeEEEEccChHHHHHHHHhcc-CC-CEEEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhcc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF 110 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~i 110 (240)
.|.+|.|+|.|.+|...++.++. .| .+|++.++++.+.+.++..+.... .+++.+ ..|+|+-++... .+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~--~~~~~~~~g~d~viD~~G~~-~~~~~~ 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL--IDDIPEDLAVDHAFECVGGR-GSQSAI 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee--hhhhhhccCCcEEEECCCCC-ccHHHH
Confidence 48999999999999999988875 54 679999987666666655554321 222222 378888887621 011112
Q ss_pred cHHHHccCCCCCEEEEcC
Q 026360 111 DKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 111 ~~~~l~~mk~gailIN~s 128 (240)
.+.++.++++..++.++
T Consensus 240 -~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 240 -NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred -HHHHHhCcCCcEEEEEe
Confidence 35677889988888775
No 382
>PRK08223 hypothetical protein; Validated
Probab=96.20 E-value=0.021 Score=50.44 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=60.1
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-------------------h----HHHhcC----ce--
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG----AK-- 81 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g----~~-- 81 (240)
..|++++|.|||+|.+|..+|+.|...|. ++.++|.+.... + ...+.+ ++
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999999999999999987 477777653111 0 011111 11
Q ss_pred ----ecCCHHhhcCcCCEEEEcCCCC-hhhhhcccHHHHccCCCCCEEEEc
Q 026360 82 ----FEEDLDTMLPKCDIVVVNTPLT-EKTRGMFDKDRIAKMKKGVLIVNN 127 (240)
Q Consensus 82 ----~~~~l~ell~~aDiVvl~lp~~-~~t~~~i~~~~l~~mk~gailIN~ 127 (240)
..++.+++++++|+|+-++..- -+++.+++...... +..+|..
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~---~iP~V~~ 150 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR---GIPALTA 150 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc---CCCEEEE
Confidence 1135667888999988776432 25677776554433 3335554
No 383
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.19 E-value=0.017 Score=54.17 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=67.5
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc---CceecCCHHhhcCcCCEEEEcC--C-CChhh-
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---GAKFEEDLDTMLPKCDIVVVNT--P-LTEKT- 106 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~---g~~~~~~l~ell~~aDiVvl~l--p-~~~~t- 106 (240)
-.|++|+|+|+|.-|.++|+.|+. |++|+++|............ .+.. ....+.+.++|+|+..- | ..|..
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vV~SPgI~~~~p~~~ 81 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIA-ALSDSRWQNLDKIVLSPGIPLTHEIVK 81 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceec-cCChhHhhCCCEEEECCCCCCCCHHHH
Confidence 358999999999999999999995 99999999543322211211 1111 11234567899887763 2 22221
Q ss_pred ------hhcccH-HHH-ccCCC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 107 ------RGMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 107 ------~~~i~~-~~l-~~mk~-gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
..++.+ +++ ..+++ ..+=|--+.|+.-...-+...|+...
T Consensus 82 ~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g 130 (454)
T PRK01368 82 IAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG 130 (454)
T ss_pred HHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 113332 332 23332 24555556688888888888888633
No 384
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.19 E-value=0.038 Score=49.27 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=43.9
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCC--CChh-----HHH---hcC----ceecCCHHhhcCcCCEEEEc
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVK--MDPQ-----LEK---ETG----AKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~--~~~~-----~~~---~~g----~~~~~~l~ell~~aDiVvl~ 99 (240)
++|+|+|. |.+|..++..+...|. +|+.+|+.. .... ... ..+ +....+.+ .+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence 58999998 9999999999988776 499999843 1110 001 111 12223444 58999999999
Q ss_pred CC
Q 026360 100 TP 101 (240)
Q Consensus 100 lp 101 (240)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 75
No 385
>PRK08328 hypothetical protein; Provisional
Probab=96.18 E-value=0.018 Score=49.12 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=32.8
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~ 68 (240)
..|.+++|.|+|+|.+|..+++.|...|. +++++|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999999997 48888854
No 386
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.18 E-value=0.015 Score=52.67 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=50.9
Q ss_pred CCCeEEEEc-cChHHHHHHHHhccCCC---EEEEEcCCCCChhHHHhcC--ceec-CCHHhhcCcCCEEEEcCCCChhhh
Q 026360 35 EGKTVGTVG-CGRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETG--AKFE-EDLDTMLPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~---~V~~~d~~~~~~~~~~~~g--~~~~-~~l~ell~~aDiVvl~lp~~~~t~ 107 (240)
...+|+|+| .|.+|+.+.+.|...++ ++.++.............+ .... .+. +.++++|+|++++|.. ..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~-~~~~~~D~vf~a~p~~-~s- 82 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTE-DSFDGVDIALFSAGGS-IS- 82 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCH-HHHcCCCEEEECCCcH-HH-
Confidence 457899999 59999999999987555 3433322111111111111 1111 122 4458899999999943 22
Q ss_pred hcccHHHHcc-CCCCCEEEEcC
Q 026360 108 GMFDKDRIAK-MKKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~-mk~gailIN~s 128 (240)
.++... .+.|+.+||.|
T Consensus 83 ----~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 83 ----KKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred ----HHHHHHHHhCCCEEEECC
Confidence 222222 25688899988
No 387
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.06 Score=47.60 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=69.6
Q ss_pred cCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh-----hHH----HhcC--ceecCCHHhhcCcCCEEEEcCC
Q 026360 34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLE----KETG--AKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~----~~~g--~~~~~~l~ell~~aDiVvl~lp 101 (240)
++|+|+..+|= .+|+.++......+|++|.+..|....+ +.+ .+.| +...+++++.++.+|+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 89999999995 5899999999999999999998764322 112 2224 4566799999999999988764
Q ss_pred CC--hhhh-----------hcccHHHHccCCCCCEEEEcC
Q 026360 102 LT--EKTR-----------GMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 102 ~~--~~t~-----------~~i~~~~l~~mk~gailIN~s 128 (240)
.+ ++.. .-++.+.++.-++++++..|-
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 32 1111 345777777778888887773
No 388
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.17 E-value=0.046 Score=50.64 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=70.5
Q ss_pred eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-----HHH-hcCceec--CCHHhhcCcCCEEEEcC--C-CChhh
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEK-ETGAKFE--EDLDTMLPKCDIVVVNT--P-LTEKT 106 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-----~~~-~~g~~~~--~~l~ell~~aDiVvl~l--p-~~~~t 106 (240)
++.|||+|..|.++|+.|+..|++|.++|....... ..+ ..|+... .+ .+.+.++|+|+..- | ..|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 478999999999999999999999999997543211 112 2465432 23 45567899887764 2 22321
Q ss_pred h-------hcccH-HHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360 107 R-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHI 147 (240)
Q Consensus 107 ~-------~~i~~-~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~g~i 147 (240)
. .++.+ +++.. ++...+-|.-+.|+.-...-+...|+....
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~ 129 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL 129 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 1 12332 33322 344456666778988888888888886443
No 389
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=96.15 E-value=0.019 Score=50.49 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=60.8
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc--CcCCEEEEcCCCChhhhhcccH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNTPLTEKTRGMFDK 112 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell--~~aDiVvl~lp~~~~t~~~i~~ 112 (240)
.|.+|.|.|.|.+|..+++.++..|.+|++.+.++...+.++++|+....+.++.. ...|+++-+..... ...
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~-----~~~ 229 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPS-----GLE 229 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChH-----HHH
Confidence 58899999999999999999999999998888766556666667764332322211 34788877664211 112
Q ss_pred HHHccCCCCCEEEEcC
Q 026360 113 DRIAKMKKGVLIVNNA 128 (240)
Q Consensus 113 ~~l~~mk~gailIN~s 128 (240)
..++.+++++.++..+
T Consensus 230 ~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 230 LALRLVRPRGTVVLKS 245 (319)
T ss_pred HHHHHhhcCCEEEEEc
Confidence 4455677777777644
No 390
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=96.15 E-value=0.024 Score=50.69 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=52.8
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChh-------HHHhcC-ceecCCHHhhcCcCCEEEEcC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LEKETG-AKFEEDLDTMLPKCDIVVVNT 100 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-------~~~~~g-~~~~~~l~ell~~aDiVvl~l 100 (240)
.+.|++|++||- +++.++++..+..+|++|.+..|.....+ .++..| +...+++++.++++|+|..-+
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 479999999996 79999999999999999999998542211 112223 445679999999999998843
No 391
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.0087 Score=51.59 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=65.1
Q ss_pred CeEEEEccChHHHHHHHHhccCCC----EEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~----~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
+++|+||.|.|..++++.+...|. ++..+.++...... ++..|++.+.+-.+.++.+|++++++. |..-.-+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK--p~~i~~vl 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK--PQVIESVL 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec--chhHHHHh
Confidence 368999999999999999988775 46666664434444 667788766566888999999999985 22222222
Q ss_pred HHHHccCCCCCEEEEcCCCccc
Q 026360 112 KDRIAKMKKGVLIVNNARGAIM 133 (240)
Q Consensus 112 ~~~l~~mk~gailIN~srg~~v 133 (240)
.+.-.....+.+++.+.-|..+
T Consensus 79 s~~~~~~~~~~iivS~aaG~tl 100 (267)
T KOG3124|consen 79 SEIKPKVSKGKIIVSVAAGKTL 100 (267)
T ss_pred hcCccccccceEEEEEeecccH
Confidence 2222224456788888877543
No 392
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=96.09 E-value=0.02 Score=50.46 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=61.7
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-CC----H-HhhcCcCCEEEEcCCCChhhhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-ED----L-DTMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~----l-~ell~~aDiVvl~lp~~~~t~~ 108 (240)
.|.+|.|.|.|.+|+.+++.++..|.+|++.+++....+...+.|.... .. . ...-...|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 5789999999999999999999999999998877655555555554211 11 1 111235788887764211
Q ss_pred cccHHHHccCCCCCEEEEcCC
Q 026360 109 MFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN~sr 129 (240)
...+.+..++++..+++++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 23456777888888888863
No 393
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.09 E-value=0.026 Score=50.42 Aligned_cols=93 Identities=27% Similarity=0.267 Sum_probs=58.2
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCChhHH----Hh-c--Cceec---CCHHhhcCcCCEEEEcCCC-
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLE----KE-T--GAKFE---EDLDTMLPKCDIVVVNTPL- 102 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~----~~-~--g~~~~---~~l~ell~~aDiVvl~lp~- 102 (240)
+||+|||. |.+|..+|..|...|. ++..+|.. .....+ .. . .+... +++.+.+++||+|+++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 48999999 9999999999987664 78999976 222111 11 0 12211 2345779999999998643
Q ss_pred -Ch-hhhh--------ccc--HHHHccCCCCCEEEEcCCC
Q 026360 103 -TE-KTRG--------MFD--KDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 103 -~~-~t~~--------~i~--~~~l~~mk~gailIN~srg 130 (240)
.| +++. ++. .+.+..-.|++++|+++..
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 12 1211 111 1233344689999999743
No 394
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=96.09 E-value=0.022 Score=50.53 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=58.7
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHh-h--cCcCCEEEEcCCCChhh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT-M--LPKCDIVVVNTPLTEKT 106 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e-l--l~~aDiVvl~lp~~~~t 106 (240)
.|.+|.|.|.|.+|..+++.++..|.+|++.+++....+.+.++|+... .++.+ + +...|+++-++....
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~-- 240 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK-- 240 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence 5789999999999999999999999999999887655566666665321 11111 1 133577765543111
Q ss_pred hhcccHHHHccCCCCCEEEEcC
Q 026360 107 RGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 107 ~~~i~~~~l~~mk~gailIN~s 128 (240)
.....++.++++..+++++
T Consensus 241 ---~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 241 ---AISALVGGLAPRGKLLILG 259 (333)
T ss_pred ---HHHHHHHHcccCCEEEEEe
Confidence 1223456677777777775
No 395
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.08 E-value=0.044 Score=51.04 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=61.6
Q ss_pred cccCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 026360 32 YDLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 32 ~~l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp 101 (240)
..+.|++|+|+|+ ..-+..+++.|...|.+|.+|||.-...+.....+.... + ...++.+|+|++++.
T Consensus 310 ~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~-~-~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 310 INVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPV-S-EVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccc-h-hhhhcCCCEEEEccC
Confidence 4589999999996 457888999999999999999986322222222332111 1 224678999999987
Q ss_pred CChhhhhcccHHHH-ccCCCCCEEEEcCCCcc
Q 026360 102 LTEKTRGMFDKDRI-AKMKKGVLIVNNARGAI 132 (240)
Q Consensus 102 ~~~~t~~~i~~~~l-~~mk~gailIN~srg~~ 132 (240)
-. +.+. ++-+.+ +.|+...+++|+ |+-+
T Consensus 388 h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 388 HQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred CH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 43 3333 333333 345545688884 5543
No 396
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.06 E-value=0.018 Score=51.51 Aligned_cols=46 Identities=33% Similarity=0.377 Sum_probs=37.8
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~ 80 (240)
.|++|.|.|.|.+|..+++.++..|.+ |++.++++...+.++++|+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence 588999999999999999999999997 6788876655555566664
No 397
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.05 E-value=0.07 Score=49.75 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=70.4
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHh--cCceec---CCHHhhcCcCCEEEEcC--C-CCh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE---EDLDTMLPKCDIVVVNT--P-LTE 104 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~---~~l~ell~~aDiVvl~l--p-~~~ 104 (240)
++-+++|+|+|..|.++|+.|+..|++|.++|...... +...+ .|+... .+ .+.+.++|+|+..- | ..|
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~~~~p 83 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELLVQASEIIISPGLALDTP 83 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHhcCCCEEEECCCCCCCCH
Confidence 35689999999999999999999999999999754321 12222 265432 23 34567899887753 2 222
Q ss_pred hhh-------hcccH-HHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 105 KTR-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 105 ~t~-------~~i~~-~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
... .++.+ +.+.. ++...+-|--+.|+.=...-+...|+...
T Consensus 84 ~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 134 (448)
T PRK03803 84 ALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAG 134 (448)
T ss_pred HHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 211 12332 33322 34345566666788888888888887643
No 398
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=96.04 E-value=0.023 Score=48.79 Aligned_cols=91 Identities=18% Similarity=0.098 Sum_probs=62.3
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcC-ceecCCHH-hh--cCcCCEEEEcCCCChhhhhc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG-AKFEEDLD-TM--LPKCDIVVVNTPLTEKTRGM 109 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g-~~~~~~l~-el--l~~aDiVvl~lp~~~~t~~~ 109 (240)
.|.++.|.|.|.+|..+++.++..|.+ |++.+++....+.+++.| ........ +. -...|+++.++...+
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----- 171 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----- 171 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence 588999999999999999999999999 988887655555555566 22111111 11 134788887765221
Q ss_pred ccHHHHccCCCCCEEEEcCCC
Q 026360 110 FDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 110 i~~~~l~~mk~gailIN~srg 130 (240)
.....+..++++..+++++-.
T Consensus 172 ~~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 172 ALETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred HHHHHHHHhcCCcEEEEEecc
Confidence 123556778899989888743
No 399
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.04 E-value=0.034 Score=50.01 Aligned_cols=111 Identities=20% Similarity=0.258 Sum_probs=65.3
Q ss_pred CeEEEEccChHHHHHHHHhcc--------CCCEEEE-EcCCCC-------ChhHH---HhcC-c--eecC--CHHhhc-C
Q 026360 37 KTVGTVGCGRIGKLLLQRLKP--------FNCNLLY-HDRVKM-------DPQLE---KETG-A--KFEE--DLDTML-P 91 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~--------~G~~V~~-~d~~~~-------~~~~~---~~~g-~--~~~~--~l~ell-~ 91 (240)
++|+|+|+|++|+.+++.|.. .+.+|++ .|++.. ..+.. ...| + .... ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 379999999999999999865 4566554 454321 01111 0101 1 1112 455554 4
Q ss_pred cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCcc
Q 026360 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 148 (240)
Q Consensus 92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i~ 148 (240)
++|+|+=|+|....-... -.-..+.++.|.-+|-...|.+. .-+.|.++.++++..
T Consensus 81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 689999999843211111 12234456788888888877765 456677777766554
No 400
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.02 E-value=0.023 Score=52.76 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=69.5
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-HHHhcCceec--CCHHhhcCcCCEEEEcC--C-CChhh
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFE--EDLDTMLPKCDIVVVNT--P-LTEKT 106 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~--~~l~ell~~aDiVvl~l--p-~~~~t 106 (240)
++.++++.|+|+|..|.+.++.|+..|++|.++|....... .....|+... ....+.++..|+|+..- | ..+..
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~ 82 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSL 82 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHH
Confidence 45689999999999999999999999999999996543221 1112255432 12234567788766543 1 11211
Q ss_pred -------hhcccH-HHHccC-CCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360 107 -------RGMFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSG 145 (240)
Q Consensus 107 -------~~~i~~-~~l~~m-k~gailIN~srg~~vd~~aL~~aL~~g 145 (240)
..++.+ +.+..+ +...+-|--+.|+.=...-|.+.|+..
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 130 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA 130 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 012332 333332 323455666678888888888888753
No 401
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.01 E-value=0.02 Score=51.90 Aligned_cols=46 Identities=30% Similarity=0.389 Sum_probs=39.3
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~ 80 (240)
.|.+|.|.|.|.+|...++.++..|. +|++.++++...+.++++|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga 231 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA 231 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence 58899999999999999999999999 79999887666666666665
No 402
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.00 E-value=0.019 Score=51.72 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=52.1
Q ss_pred CCeEEEEc-cChHHHHHHHHhccCCCE---EEEEcCCCCChhHHHhcC--ceecCCHH-hhcCcCCEEEEcCCCChhhhh
Q 026360 36 GKTVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETG--AKFEEDLD-TMLPKCDIVVVNTPLTEKTRG 108 (240)
Q Consensus 36 g~~vgIIG-~G~iG~~~A~~l~~~G~~---V~~~d~~~~~~~~~~~~g--~~~~~~l~-ell~~aDiVvl~lp~~~~t~~ 108 (240)
+++|+|+| .|.+|+.+++.|...|+. +.+..+.....+...-.+ .... +++ +.++++|+|++++|.. .++.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~-d~~~~~~~~vDvVf~A~g~g-~s~~ 78 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVE-DLTTFDFSGVDIALFSAGGS-VSKK 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEe-eCCHHHHcCCCEEEECCChH-HHHH
Confidence 46899999 599999999999986654 455543322211111111 1211 222 3347899999999833 2222
Q ss_pred cccHHHHccCCCCCEEEEcCC
Q 026360 109 MFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 109 ~i~~~~l~~mk~gailIN~sr 129 (240)
+.. . .++.|+.+||.|.
T Consensus 79 ~~~-~---~~~~G~~VIDlS~ 95 (334)
T PRK14874 79 YAP-K---AAAAGAVVIDNSS 95 (334)
T ss_pred HHH-H---HHhCCCEEEECCc
Confidence 221 1 2356889998874
No 403
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.99 E-value=0.011 Score=49.72 Aligned_cols=65 Identities=23% Similarity=0.227 Sum_probs=49.2
Q ss_pred EEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCC--hhHHHhcCceec-------CCHHhhcCcCCEEEEcCCCC
Q 026360 39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD--PQLEKETGAKFE-------EDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 39 vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~--~~~~~~~g~~~~-------~~l~ell~~aDiVvl~lp~~ 103 (240)
|.|+|. |.+|+.+++.|...+++|.+..|+..+ .......|++.+ +++.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678995 999999999999999999999886522 222344565422 35567899999999999843
No 404
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.98 E-value=0.023 Score=55.69 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=51.4
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E 84 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~ 84 (240)
-.|++|.|||.|..|.+.|..|+..|++|++|++.+.. .+.+...|+... .
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i 404 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI 404 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence 36999999999999999999999999999999875321 122344565421 1
Q ss_pred CHHhhcCcCCEEEEcCCC
Q 026360 85 DLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 85 ~l~ell~~aDiVvl~lp~ 102 (240)
+++++..+.|.|++++..
T Consensus 405 ~~~~~~~~~DavilAtGa 422 (654)
T PRK12769 405 SLESLLEDYDAVFVGVGT 422 (654)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 455666789999998753
No 405
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.98 E-value=0.017 Score=55.95 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=49.1
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCce-ecCC---HHhhcCcCCEEEEcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAK-FEED---LDTMLPKCDIVVVNTP 101 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~-~~~~---l~ell~~aDiVvl~lp 101 (240)
.....|+|||||-|..|+.+++.++.+|++|+++|+++..+... ....+. ...+ +.++++++|+|+....
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 35789999999999999999999999999999999865422211 110010 1123 4456778999876543
No 406
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=95.96 E-value=0.023 Score=50.60 Aligned_cols=88 Identities=24% Similarity=0.181 Sum_probs=59.7
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceec------CCHHhhc-----CcCCEEEEcCC
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE------EDLDTML-----PKCDIVVVNTP 101 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~------~~l~ell-----~~aDiVvl~lp 101 (240)
.|.+|.|.|. |.+|+.+++.++.+|.+|++.+++....+..++ +|+..+ .++.+.+ ...|+++-++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 5899999997 999999999999999999888876555555555 665311 1222211 24677776654
Q ss_pred CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 102 LTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 102 ~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
. . ...+.++.++++..++.++
T Consensus 231 ~-----~-~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 231 G-----K-MLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred H-----H-HHHHHHHHhccCcEEEEec
Confidence 1 1 1235567778888888775
No 407
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.96 E-value=0.025 Score=48.47 Aligned_cols=87 Identities=23% Similarity=0.396 Sum_probs=60.4
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cCce--e-cCCHHhhcC---cCCEEEE-----
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGAK--F-EEDLDTMLP---KCDIVVV----- 98 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g~~--~-~~~l~ell~---~aDiVvl----- 98 (240)
+.|++|.=||+| |..++.-+...|++|++.|.++...+.++. -|+. + ..+.+++.+ +.|+|++
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 789999999998 347788888889999999998776665552 2332 2 235566665 6898866
Q ss_pred cCCCChhhhhcccHHHHccCCCCCEEEE
Q 026360 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVN 126 (240)
Q Consensus 99 ~lp~~~~t~~~i~~~~l~~mk~gailIN 126 (240)
|+|..+. +-....+.+|||.+++-
T Consensus 136 Hv~dp~~----~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 136 HVPDPES----FLRACAKLVKPGGILFL 159 (243)
T ss_pred ccCCHHH----HHHHHHHHcCCCcEEEE
Confidence 4553211 34457778899876654
No 408
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=95.93 E-value=0.049 Score=51.96 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=68.2
Q ss_pred ccCCCeEEEEcc---ChHHHHHHHHhccCC-CEEEEEcCCCC--Chh---HHHhcC--ceecCCHHhhcCcCCEE--EE-
Q 026360 33 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQ---LEKETG--AKFEEDLDTMLPKCDIV--VV- 98 (240)
Q Consensus 33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G-~~V~~~d~~~~--~~~---~~~~~g--~~~~~~l~ell~~aDiV--vl- 98 (240)
.+.|++|+++|= +++.++++..+..+| ++|.+..|... +.+ .+++.| +...+++++.++++|+. ..
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 588999999996 699999999999998 99999887543 222 122334 44568999999999952 22
Q ss_pred ------cCCCC--h---h--hhhcccHHHHccCCCCCEEEEcC
Q 026360 99 ------NTPLT--E---K--TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 99 ------~lp~~--~---~--t~~~i~~~~l~~mk~gailIN~s 128 (240)
..+.. + . -...++.+.++.+|+++++..+.
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 12111 0 1 12346888888899999888876
No 409
>PRK05442 malate dehydrogenase; Provisional
Probab=95.92 E-value=0.084 Score=47.49 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=43.2
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCC---h----hHHHhc-----CceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---P----QLEKET-----GAKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~---~----~~~~~~-----g~~~~~~l~ell~~aDiV 96 (240)
.+|+|||. |.+|..+|..|...|. ++..+|..+.. . +..... ......+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999988765443 78899974321 1 111100 122223555778999999
Q ss_pred EEcCC
Q 026360 97 VVNTP 101 (240)
Q Consensus 97 vl~lp 101 (240)
+++.-
T Consensus 85 VitaG 89 (326)
T PRK05442 85 LLVGA 89 (326)
T ss_pred EEeCC
Confidence 99864
No 410
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.91 E-value=0.022 Score=51.31 Aligned_cols=88 Identities=24% Similarity=0.205 Sum_probs=59.4
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceec------CCHHhhc-----CcCCEEEEcCC
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTML-----PKCDIVVVNTP 101 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~------~~l~ell-----~~aDiVvl~lp 101 (240)
.|.+|.|.|. |.+|..+++.++..|++|++.+++..+.+.++ ++|+..+ .++.+.+ ...|+++-++.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 5899999998 99999999999999999988887654444444 5665321 1232222 13677776664
Q ss_pred CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 102 LTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 102 ~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
. . .....++.++++..++.++
T Consensus 238 ~-----~-~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 238 G-----D-MLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred H-----H-HHHHHHHHhccCCEEEEEC
Confidence 1 1 1235567778888887775
No 411
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=95.90 E-value=0.039 Score=49.26 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=60.5
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDiVvl~lp~ 102 (240)
.|.+|.|.|.|.+|..+++.++..|+ +|++.+++....+.+.+.|+... .++ .+... ..|+++-+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 58899999999999999999999999 78888876555555555565321 111 12222 37888877652
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.+ ...+.++.++++..++.++
T Consensus 252 ~~-----~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 252 QA-----TLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred HH-----HHHHHHHhccCCCEEEEEc
Confidence 11 1234566778888888876
No 412
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.022 Score=48.79 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=34.1
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM 70 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~ 70 (240)
+++++++.|.|. |.||+.+|+.|...|++|++.+++..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999995 89999999999999999999998753
No 413
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=95.90 E-value=0.026 Score=51.00 Aligned_cols=47 Identities=26% Similarity=0.230 Sum_probs=38.8
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCc
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~ 80 (240)
-.|.+|.|+|.|.+|..+++.++.+|. +|++.+++....+.++++|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga 230 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA 230 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC
Confidence 358999999999999999999999999 68888886655555666665
No 414
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=95.90 E-value=0.026 Score=50.14 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCeEEEEcc-ChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHh-cCceec-----CCHHhhc-----CcCCEEEEcCCC
Q 026360 36 GKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML-----PKCDIVVVNTPL 102 (240)
Q Consensus 36 g~~vgIIG~-G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~-----~~l~ell-----~~aDiVvl~lp~ 102 (240)
|.+|.|.|. |.+|..+++.++.+|+ +|++.+++....+.+.+ +|+..+ .++.+.+ ...|+++-++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 79988876544444443 665321 1222221 246788776652
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
+ .+ .+.++.++++..+|.++
T Consensus 235 -~----~~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 235 -E----IS-DTVISQMNENSHIILCG 254 (345)
T ss_pred -H----HH-HHHHHHhccCCEEEEEe
Confidence 1 12 45667788888888875
No 415
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.89 E-value=0.014 Score=52.57 Aligned_cols=62 Identities=21% Similarity=0.422 Sum_probs=43.7
Q ss_pred eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCc-eecCC---HHhhcCcCCEEEEc
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA-KFEED---LDTMLPKCDIVVVN 99 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~-~~~~~---l~ell~~aDiVvl~ 99 (240)
+|||||-|..|+.+++.++.+|++|+++|+++..+... ....+ ....+ +.++++.+|+|...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 58999999999999999999999999999865433211 11101 11123 56678889987543
No 416
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=95.87 E-value=0.032 Score=50.34 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=39.6
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~ 80 (240)
.|.+|.|.|.|.+|..+++.++..|. +|++.++++...+.++++|+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga 233 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV 233 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 58999999999999999999999999 79999887666666666765
No 417
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.87 E-value=0.028 Score=52.21 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=52.1
Q ss_pred ccccCCCeEEEEcc----------ChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 026360 31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN 99 (240)
Q Consensus 31 ~~~l~g~~vgIIG~----------G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~ 99 (240)
+.++.|++|+|+|+ ..-+..+++.|+..| .+|.+|||.-............ ..++++.++.||+|+++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~-~~~~~~~~~~ad~vvi~ 393 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVT-LVSLDEALATADVLVML 393 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCcee-eCCHHHHHhCCCEEEEC
Confidence 34688999999996 446778999999986 9999999863221111111222 36889999999999999
Q ss_pred CCC
Q 026360 100 TPL 102 (240)
Q Consensus 100 lp~ 102 (240)
++-
T Consensus 394 t~~ 396 (415)
T PRK11064 394 VDH 396 (415)
T ss_pred CCC
Confidence 974
No 418
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.85 E-value=0.097 Score=40.86 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=28.7
Q ss_pred eEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK 69 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~ 69 (240)
+|.|+|+|.+|..+++.|...|. ++.++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 599998763
No 419
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=95.85 E-value=0.027 Score=50.57 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=57.5
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec---C--C-------HHhhc--CcCCEEEEc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--D-------LDTML--PKCDIVVVN 99 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~--~-------l~ell--~~aDiVvl~ 99 (240)
.|.+|.|.|.|.+|..+++.++..|. +|++.+++....+..+++|+..+ . + +.++. ...|+++-+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 68899999999999999999999999 89888876544555555665211 0 0 11111 235777666
Q ss_pred CCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 100 lp~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
..... .....+..++++..++.++
T Consensus 257 ~g~~~-----~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 257 SGHPA-----AVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCChH-----HHHHHHHHhccCCEEEEEc
Confidence 54211 1224456677777777665
No 420
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=95.84 E-value=0.034 Score=48.78 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=38.5
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
.|.+|.|.|. |.+|..+++.++..|.+|++.++++...+..++.|+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~ 192 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGA 192 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCC
Confidence 3689999998 999999999999999999988877655566666665
No 421
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.83 E-value=0.019 Score=48.27 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=34.0
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM 70 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~ 70 (240)
++.++++.|+|. |.+|..+++.|...|++|++.+|++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999995 89999999999999999999998753
No 422
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.81 E-value=0.059 Score=48.42 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=58.7
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCC--CChh-----HHHhc-----CceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVK--MDPQ-----LEKET-----GAKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~--~~~~-----~~~~~-----g~~~~~~l~ell~~aDiV 96 (240)
.+|+|+|. |.+|..+|..|...|. ++..+|+.. ...+ ..... +.....+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999998876442 588999764 2111 00100 111124566889999999
Q ss_pred EEcCCC--Ch-hhh--------hccc--HHHHccC-CCCCEEEEcCCCcccCHHH
Q 026360 97 VVNTPL--TE-KTR--------GMFD--KDRIAKM-KKGVLIVNNARGAIMDTQA 137 (240)
Q Consensus 97 vl~lp~--~~-~t~--------~~i~--~~~l~~m-k~gailIN~srg~~vd~~a 137 (240)
+++.-. .+ +++ .++. ...+... +|++++|.++ .++|.-.
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 987632 22 121 1111 1123334 5888888886 4455444
No 423
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.80 E-value=0.012 Score=53.81 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=56.8
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-------------------h----HHHhc--C--ceec
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKET--G--AKFE 83 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~--g--~~~~ 83 (240)
..|.+++|.|+|+|.+|..+++.|...|. ++.++|...... + ...+. . ++..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 46899999999999999999999999997 688888752110 0 00111 1 1111
Q ss_pred ------CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360 84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116 (240)
Q Consensus 84 ------~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~ 116 (240)
.+.+++++++|+|+.|+- +.+++.++++...+
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~ 154 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI 154 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 244578889998877764 46677777654443
No 424
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.79 E-value=0.025 Score=54.98 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=32.6
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 68 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~ 68 (240)
..|++.+|.|+|+|.+|..+|+.|.+.|.. ++++|..
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 468899999999999999999999999984 7777753
No 425
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=95.77 E-value=0.043 Score=48.53 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=61.0
Q ss_pred CCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceecCC--------HHhhcC--cCCEEEEcCCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEED--------LDTMLP--KCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~--------l~ell~--~aDiVvl~lp~~ 103 (240)
.|.+|.|.|.|.+|..+++.++..| .+|++.++++...+..+++|+...-+ +.++.. ..|+++-+.+..
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~ 246 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD 246 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence 5889999999999999999999998 89988887655555555566422111 222332 367777766521
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~srg 130 (240)
+ ...+.+..+++++.++.++..
T Consensus 247 ~-----~~~~~~~~l~~~g~~i~~g~~ 268 (340)
T cd05284 247 E-----TLALAAKLLAKGGRYVIVGYG 268 (340)
T ss_pred H-----HHHHHHHHhhcCCEEEEEcCC
Confidence 1 123456667788888877644
No 426
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.76 E-value=0.033 Score=50.95 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=33.5
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~ 68 (240)
..|.+++|.|+|+|.+|..+++.|...|. ++.++|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 36899999999999999999999999998 58888876
No 427
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.75 E-value=0.035 Score=48.88 Aligned_cols=89 Identities=22% Similarity=0.313 Sum_probs=60.5
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHh-hcCcCCEEEEcCCCChhhhhcccHH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-ll~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
.|.++.|.|.|.+|..+++.++..|.+|++.+++....+.++..|+....+.++ .-+..|+++.+.+.. . ...+
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~----~-~~~~ 241 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG----A-LVPA 241 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH----H-HHHH
Confidence 578999999999999999999999999988887665555566667643212221 113467777665421 1 2345
Q ss_pred HHccCCCCCEEEEcC
Q 026360 114 RIAKMKKGVLIVNNA 128 (240)
Q Consensus 114 ~l~~mk~gailIN~s 128 (240)
.++.++++..++..+
T Consensus 242 ~~~~l~~~G~~v~~g 256 (329)
T cd08298 242 ALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHhhcCCEEEEEc
Confidence 677788888787764
No 428
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.74 E-value=0.032 Score=49.72 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=42.7
Q ss_pred eEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHhc----------CceecCCHHhhcCcCCEEEEcCC
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET----------GAKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~~----------g~~~~~~l~ell~~aDiVvl~lp 101 (240)
||+|||.|.+|..+|..|...|. ++..+|......+ .+.++ .+....+-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 68999999999999998876554 6999998643221 11110 11111122467899999999864
No 429
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.73 E-value=0.0072 Score=49.83 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=44.9
Q ss_pred CeEEEEccChHHHHHHHH--hccCCCEE-EEEcCCCCChhH-HHhcCceecCCHHhhcC--cCCEEEEcCCC
Q 026360 37 KTVGTVGCGRIGKLLLQR--LKPFNCNL-LYHDRVKMDPQL-EKETGAKFEEDLDTMLP--KCDIVVVNTPL 102 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~--l~~~G~~V-~~~d~~~~~~~~-~~~~g~~~~~~l~ell~--~aDiVvl~lp~ 102 (240)
-++.|||.|++|++++.. .+..|+++ -+||..+..... ....-+...+++++.++ +.|+.++|+|.
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 478999999999999865 34678985 577875532111 11122334567777777 67889999994
No 430
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=95.67 E-value=0.051 Score=47.21 Aligned_cols=89 Identities=24% Similarity=0.207 Sum_probs=57.6
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDiVvl~lp~ 102 (240)
.|.++.|.|.|.+|..+++.+++.|++ |++.++.+...+....+|+... .++ .++. ...|+++-+...
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~ 208 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH 208 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 588999999999999999999999999 8887765544444455554211 111 1222 236777666531
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
. ......++.++++..+++++
T Consensus 209 ~-----~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 209 Q-----WPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred H-----HHHHHHHHHhccCCEEEEEc
Confidence 1 11234556677777787776
No 431
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.67 E-value=0.056 Score=49.81 Aligned_cols=154 Identities=17% Similarity=0.180 Sum_probs=95.5
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCCCC---hhH----------HH-hcCceecCCHHhhcCcC
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKMD---PQL----------EK-ETGAKFEEDLDTMLPKC 93 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~~~---~~~----------~~-~~g~~~~~~l~ell~~a 93 (240)
+..|+..+|.+.|.|.-|-++++.+++.|+ +|+.+|+...- .+. +. ..+. . .. ++.+..+
T Consensus 194 gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~-~-~~-~~~~~~a 270 (432)
T COG0281 194 GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGE-R-TL-DLALAGA 270 (432)
T ss_pred CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhcc-c-cc-cccccCC
Confidence 568999999999999999999999999998 58999976321 100 00 0110 1 11 4578889
Q ss_pred CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC-CccEEEeeCCCCCCCCCCCCCCCCCCe
Q 026360 94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQ 172 (240)
Q Consensus 94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~l~~~~nv 172 (240)
|+++=+.- .+.+.++.++.|.+++++.=+|....--....+.+-..| .|.+- .-|. .|- +..|+
T Consensus 271 dv~iG~S~-----~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaT------Grsd---~Pn-QvNNv 335 (432)
T COG0281 271 DVLIGVSG-----VGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVAT------GRSD---YPN-QVNNV 335 (432)
T ss_pred CEEEEcCC-----CCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEe------CCCC---Ccc-cccce
Confidence 98766543 288999999999999999988876532212222222222 23321 1121 122 67899
Q ss_pred EEcCCCCCCcHHHH-----HHhhhhHHHHHHHHHHHc
Q 026360 173 AMTPHVSGTTIDAQ-----VIVHFFPVFMRLFTSFLS 204 (240)
Q Consensus 173 ~~TPH~a~~t~~~~-----~~~~~~~~~~~~~~~~~~ 204 (240)
++-|-+.-...+++ +.|.. .+.+-|..+.+
T Consensus 336 L~FPgIfrGaLd~rA~~ItdeM~~--AAa~AiA~~~~ 370 (432)
T COG0281 336 LIFPGIFRGALDVRAKTITDEMKI--AAAEAIADLAR 370 (432)
T ss_pred eEcchhhhhhHhhccccCCHHHHH--HHHHHHHhhcc
Confidence 99999854433332 22333 44555666654
No 432
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=95.65 E-value=0.042 Score=48.87 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=61.1
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------CCHHh----hcC-cCCEEEEcCCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDT----MLP-KCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~e----ll~-~aDiVvl~lp~~ 103 (240)
.|+++.|.|.|.+|+.+++.++..|.+|++.+++....+...+.|+... .++.+ +.. ..|+++-++..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~- 243 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI- 243 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence 5789999999999999999999999999988876555555555665211 11111 111 47878776642
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcCC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~sr 129 (240)
.. .....+..+++++.+++++.
T Consensus 244 ~~----~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 244 PE----TCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred HH----HHHHHHHHhhcCCEEEEeCC
Confidence 11 12345667888888888764
No 433
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.65 E-value=0.047 Score=48.80 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=75.1
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
.|.++.|+|.|.||-.....++++|+ +|++.|..+...+.++++|++.+... +..+ ..++....+. .
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~----~~~~-------~~~~~~~~v~-~ 236 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPS----SHKS-------SPQELAELVE-K 236 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeec----cccc-------cHHHHHHHHH-h
Confidence 58999999999999999999999998 49999988777888888887654211 1111 0122222221 1
Q ss_pred HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCC--CCCCeEEcCCCC
Q 026360 114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR--YMPNQAMTPHVS 179 (240)
Q Consensus 114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~--~~~nv~~TPH~a 179 (240)
.+..-+++ +.++++ |.-+..++-+.+++.|... .+=.+..|+.+ -|++ .+.++-+++-+-
T Consensus 237 ~~g~~~~d-~~~dCs-G~~~~~~aai~a~r~gGt~--vlvg~g~~~~~--fpi~~v~~kE~~~~g~fr 298 (354)
T KOG0024|consen 237 ALGKKQPD-VTFDCS-GAEVTIRAAIKATRSGGTV--VLVGMGAEEIQ--FPIIDVALKEVDLRGSFR 298 (354)
T ss_pred hccccCCC-eEEEcc-CchHHHHHHHHHhccCCEE--EEeccCCCccc--cChhhhhhheeeeeeeee
Confidence 22212232 344553 4445555556777766652 33334444432 2332 344677777654
No 434
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.64 E-value=0.039 Score=54.01 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=51.7
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E 84 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~ 84 (240)
..|++|.|||.|..|...|..|+..|++|++|++.+.. .+.....|+... .
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 36999999999999999999999999999999876421 123344555321 1
Q ss_pred CHHhhcCcCCEEEEcCCC
Q 026360 85 DLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 85 ~l~ell~~aDiVvl~lp~ 102 (240)
+++++....|.|++++..
T Consensus 388 ~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 388 TFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 455677789999998754
No 435
>PRK07877 hypothetical protein; Provisional
Probab=95.64 E-value=0.031 Score=55.30 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=58.0
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCC-----h-------------hHHH----hc--C--cee-
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMD-----P-------------QLEK----ET--G--AKF- 82 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~-----~-------------~~~~----~~--g--~~~- 82 (240)
..|++++|+|+|+| +|..+|..|...|. +++.+|..... . +.++ +. . ++.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 45899999999999 99999999998884 68887754211 0 0010 11 1 111
Q ss_pred -----cCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHcc
Q 026360 83 -----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117 (240)
Q Consensus 83 -----~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~ 117 (240)
.+++++++.++|+|+-|+- +-+++.+++....+.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1367788999999988886 467888888665544
No 436
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.61 E-value=0.13 Score=47.82 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=68.7
Q ss_pred cCC-CeEEEEccChHHHHHHHHhccC--CCEEEEEcCCCCCh--hHHHhcCceec---CCHHhhcCcCCEEEEcC--C-C
Q 026360 34 LEG-KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDP--QLEKETGAKFE---EDLDTMLPKCDIVVVNT--P-L 102 (240)
Q Consensus 34 l~g-~~vgIIG~G~iG~~~A~~l~~~--G~~V~~~d~~~~~~--~~~~~~g~~~~---~~l~ell~~aDiVvl~l--p-~ 102 (240)
+.+ ++|.|+|+|..|.+.++.|... |++|.++|...... +..+. |+... .+. +.+.++|+|+..- | .
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~-~~~~~~d~vV~SpgI~~~ 81 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNL-EWLLEADLVVTNPGIALA 81 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCCh-HHhccCCEEEECCCCCCC
Confidence 456 7899999999999999998876 58899999654322 11222 65432 133 3457899887764 2 2
Q ss_pred Chhhh-------hcccH-HHHc-cCCCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 103 TEKTR-------GMFDK-DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 103 ~~~t~-------~~i~~-~~l~-~mk~gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
.|... .++.+ +.+. .++...+-|--+.|+.=...-+...|+...
T Consensus 82 ~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g 134 (438)
T PRK04663 82 TPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG 134 (438)
T ss_pred CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence 22211 12322 3332 234345556666688888887888887533
No 437
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.60 E-value=0.093 Score=48.51 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=65.5
Q ss_pred CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc--CcCCEEEEcC--C-CChhh---hh
Q 026360 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNT--P-LTEKT---RG 108 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell--~~aDiVvl~l--p-~~~~t---~~ 108 (240)
++|.|+|+|..|.++|+.|+ .|++|+++|..+.... ..+.|+... + ++.+ +++|+|+..- | ..|.. +.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 46899999999999999999 9999999995432221 223465543 2 2234 4689876652 2 22221 22
Q ss_pred cccH-HHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360 109 MFDK-DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144 (240)
Q Consensus 109 ~i~~-~~l~~mk~gailIN~srg~~vd~~aL~~aL~~ 144 (240)
++.+ +.+..+.+..+-|--+.|+.=...-+...|+.
T Consensus 77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 3322 23333223356666667888888888888876
No 438
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.59 E-value=0.021 Score=47.82 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=33.8
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM 70 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~ 70 (240)
++.|+++.|.|. |.||..+++.+...|++|++.++++.
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467999999996 78999999999999999999998653
No 439
>PRK12862 malic enzyme; Reviewed
Probab=95.59 E-value=0.1 Score=52.02 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=88.2
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCCC-----C-------hhHHHhcCceecCCHHhhcCcCCE
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM-----D-------PQLEKETGAKFEEDLDTMLPKCDI 95 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~~-----~-------~~~~~~~g~~~~~~l~ell~~aDi 95 (240)
+..+...+|.|.|.|.-|..+|+.|...|. +++.+|+... . ...++.. ...+++|+++.+|+
T Consensus 188 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~---~~~~l~e~~~~~~v 264 (763)
T PRK12862 188 GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT---DARTLAEVIEGADV 264 (763)
T ss_pred CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc---ccCCHHHHHcCCCE
Confidence 567899999999999999999999999898 6888886521 1 1112221 22589999999998
Q ss_pred EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh--CCccEEEeeCCCCCCCCCCCCCCCCCCeE
Q 026360 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGDVWNPQPAPKDHPWRYMPNQA 173 (240)
Q Consensus 96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~~~~~l~~~~nv~ 173 (240)
++=+. +.+.++++.++.|.+.++|.=.|....- -.=.++.+- |.|.+-+- ...| -+..|++
T Consensus 265 ~iG~s-----~~g~~~~~~v~~M~~~piifalsNP~~E--~~p~~a~~~~~~~i~atGr---s~~p-------~Q~NN~~ 327 (763)
T PRK12862 265 FLGLS-----AAGVLKPEMVKKMAPRPLIFALANPTPE--ILPEEARAVRPDAIIATGR---SDYP-------NQVNNVL 327 (763)
T ss_pred EEEcC-----CCCCCCHHHHHHhccCCEEEeCCCCccc--CCHHHHHHhcCCEEEEECC---cCCC-------Cccccee
Confidence 76433 1488999999999999999999987642 122223333 33443331 1112 1456888
Q ss_pred EcCCCC
Q 026360 174 MTPHVS 179 (240)
Q Consensus 174 ~TPH~a 179 (240)
+-|=++
T Consensus 328 ~FPgi~ 333 (763)
T PRK12862 328 CFPYIF 333 (763)
T ss_pred eccchh
Confidence 888764
No 440
>PLN02827 Alcohol dehydrogenase-like
Probab=95.59 E-value=0.044 Score=49.96 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=38.6
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCce
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAK 81 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~ 81 (240)
.|.+|.|.|.|.+|..+++.++..|.+ |++.++++...+.++++|+.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~ 240 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT 240 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc
Confidence 589999999999999999999999985 77888766555666666753
No 441
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.59 E-value=0.052 Score=48.18 Aligned_cols=87 Identities=21% Similarity=0.174 Sum_probs=55.8
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecC-----CHHh--hc--CcCCEEEEcCCCCh
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT--ML--PKCDIVVVNTPLTE 104 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----~l~e--ll--~~aDiVvl~lp~~~ 104 (240)
.|.++.|.|. |.+|..+++.++..|.+|++.+.+. ..+.+++.|+.... ...+ .. +..|+++-+... +
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~ 254 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG-P 254 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH-H
Confidence 5889999998 9999999999999999988777543 44445555542211 1111 11 236777666541 1
Q ss_pred hhhhcccHHHHccCCCCCEEEEcC
Q 026360 105 KTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 105 ~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.....++.++++..+|+++
T Consensus 255 -----~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 255 -----LFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred -----HHHHHHHHhccCCEEEEec
Confidence 1234566677777777664
No 442
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=95.57 E-value=0.058 Score=47.14 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=37.1
Q ss_pred CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
+.+|.|.|. |.+|..+++.++..|.+|++.+++....+.+.++|+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~ 192 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGA 192 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence 568999998 999999999999999999888887655555555564
No 443
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.55 E-value=0.057 Score=48.19 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=50.6
Q ss_pred CeEEEEc-cChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360 37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (240)
Q Consensus 37 ~~vgIIG-~G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~ 114 (240)
-+|+|+| -|-.|..+.+.|... .+++........ .. ..+.+++++++|++++++|.. ....+. ...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~-~~~ 69 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPDD-AAREAV-SLV 69 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCHH-HHHHHH-HHH
Confidence 3799999 599999999999876 345555543221 11 124567778999999999943 222222 111
Q ss_pred HccCCCCCEEEEcC
Q 026360 115 IAKMKKGVLIVNNA 128 (240)
Q Consensus 115 l~~mk~gailIN~s 128 (240)
.+.|+.+||.|
T Consensus 70 ---~~~g~~VIDlS 80 (310)
T TIGR01851 70 ---DNPNTCIIDAS 80 (310)
T ss_pred ---HhCCCEEEECC
Confidence 24678888888
No 444
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=95.54 E-value=0.039 Score=49.87 Aligned_cols=46 Identities=28% Similarity=0.343 Sum_probs=38.8
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCc
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~ 80 (240)
.|.+|.|.|.|.+|...++.++.+|+ +|++.+++..+.+.++++|+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa 232 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA 232 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC
Confidence 58999999999999999999999999 69888887655566666665
No 445
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.51 E-value=0.05 Score=43.23 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=54.6
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 113 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~ 113 (240)
..|++|++||+= ..+++.++..+.++.++|+++..... ..+.......++++++||+|+++-. .-..+-+ .+
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~ 80 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGE--EPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DD 80 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--S--SCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCC--CCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HH
Confidence 479999999962 13677888889999999987622211 1111134467899999999988752 0011112 35
Q ss_pred HHccCCCCCEEEEcC
Q 026360 114 RIAKMKKGVLIVNNA 128 (240)
Q Consensus 114 ~l~~mk~gailIN~s 128 (240)
.++..+++..++=+|
T Consensus 81 iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 81 ILELARNAREVILYG 95 (147)
T ss_dssp HHHHTTTSSEEEEES
T ss_pred HHHhCccCCeEEEEe
Confidence 677777777777665
No 446
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.49 E-value=0.018 Score=52.37 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=33.1
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~ 68 (240)
..|++++|.|+|+|.+|..+++.|...|. ++.++|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999988 48888865
No 447
>PRK07411 hypothetical protein; Validated
Probab=95.44 E-value=0.039 Score=50.80 Aligned_cols=88 Identities=23% Similarity=0.173 Sum_probs=57.7
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----------------------HHHhc--Cc--ee-
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET--GA--KF- 82 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~--g~--~~- 82 (240)
..|+..+|.|||+|.+|..+|+.|...|. ++..+|.+..... ...+. .+ ..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46899999999999999999999999887 4788876521100 00111 11 11
Q ss_pred ---c--CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCC
Q 026360 83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120 (240)
Q Consensus 83 ---~--~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~ 120 (240)
. .+..+++.++|+|+.|+- +.+++.++++...+.-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 1 233467889998887764 456777777555444333
No 448
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.43 E-value=0.057 Score=48.29 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=49.9
Q ss_pred CeEEEEc-cChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360 37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114 (240)
Q Consensus 37 ~~vgIIG-~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~ 114 (240)
.+|+|+| .|-+|..+.+.|.... .++.....+... . . .+.++.++++|++++++|... ..+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~~------s~~~ 66 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDDA------AREA 66 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHHH------HHHH
Confidence 5899999 6999999999998764 355544332211 0 1 234456678999999999432 2222
Q ss_pred HccC-CCCCEEEEcC
Q 026360 115 IAKM-KKGVLIVNNA 128 (240)
Q Consensus 115 l~~m-k~gailIN~s 128 (240)
...+ +.|..+||.|
T Consensus 67 ~~~~~~~g~~VIDlS 81 (313)
T PRK11863 67 VALIDNPATRVIDAS 81 (313)
T ss_pred HHHHHhCCCEEEECC
Confidence 2222 4688899888
No 449
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.43 E-value=0.06 Score=47.31 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=46.4
Q ss_pred CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh---c-----Cce-------ecCCHHhhcCcCCEEEE
Q 026360 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---T-----GAK-------FEEDLDTMLPKCDIVVV 98 (240)
Q Consensus 35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~---~-----g~~-------~~~~l~ell~~aDiVvl 98 (240)
.|++|.|.| .|-||+.+++.|...|++|.+.+++......... . .+. ....++++++.+|+|+-
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 378999999 6999999999999999999988876432211110 0 111 11346677888998877
Q ss_pred cCC
Q 026360 99 NTP 101 (240)
Q Consensus 99 ~lp 101 (240)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 653
No 450
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.42 E-value=0.23 Score=49.48 Aligned_cols=134 Identities=15% Similarity=0.121 Sum_probs=88.6
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCCC----C---hhHHHh-c-CceecCCHHhhcCcCCEEEE
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM----D---PQLEKE-T-GAKFEEDLDTMLPKCDIVVV 98 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~~----~---~~~~~~-~-g~~~~~~l~ell~~aDiVvl 98 (240)
+..+...+|.|.|.|.-|..+|+.|...|. +++.+|+... . ....+. + .-....+++|+++.+|+++=
T Consensus 180 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG 259 (752)
T PRK07232 180 GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG 259 (752)
T ss_pred CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE
Confidence 467899999999999999999999998888 6888887531 1 111111 1 00123589999999997754
Q ss_pred cCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCC
Q 026360 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178 (240)
Q Consensus 99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~ 178 (240)
. . ..+.++++.++.|.+.+++.=.|....--..+.+.....|.|.+-+- ...| =+..|+++-|=+
T Consensus 260 ~-s----~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGr---s~~p-------nQ~NN~~~FPgi 324 (752)
T PRK07232 260 L-S----AAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATGR---SDYP-------NQVNNVLCFPYI 324 (752)
T ss_pred c-C----CCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEECC---cCCC-------Ccccceeecchh
Confidence 3 2 14889999999999999999999877521222222222234443331 1112 145688888866
Q ss_pred C
Q 026360 179 S 179 (240)
Q Consensus 179 a 179 (240)
+
T Consensus 325 ~ 325 (752)
T PRK07232 325 F 325 (752)
T ss_pred h
Confidence 4
No 451
>PRK10083 putative oxidoreductase; Provisional
Probab=95.42 E-value=0.058 Score=47.74 Aligned_cols=90 Identities=23% Similarity=0.302 Sum_probs=57.4
Q ss_pred CCCeEEEEccChHHHHHHHHhcc-CCCE-EEEEcCCCCChhHHHhcCceec-----CCHHhhcC----cCCEEEEcCCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP----KCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~----~aDiVvl~lp~~ 103 (240)
.|.+|.|.|.|.+|..+++.++. +|.+ |++.++++.+.+.+.++|+..+ .++.+.+. +.|+++-++...
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~~ 239 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACHP 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCCH
Confidence 58899999999999999999986 6986 6677776555555666665321 12222221 234665555311
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcCC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~sr 129 (240)
. ...+.++.++++..+|+++.
T Consensus 240 -~----~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 240 -S----ILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred -H----HHHHHHHHhhcCCEEEEEcc
Confidence 1 12345666777777877763
No 452
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.41 E-value=0.051 Score=55.80 Aligned_cols=94 Identities=9% Similarity=0.116 Sum_probs=63.1
Q ss_pred ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-------------------------ChhHHHhcC--------
Q 026360 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-------------------------DPQLEKETG-------- 79 (240)
Q Consensus 33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-------------------------~~~~~~~~g-------- 79 (240)
.+.-.++.|+|.|++|+..++.+..+|++ . .++... ..+.....+
T Consensus 200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 34467899999999999999999988776 2 222110 000000000
Q ss_pred -c-----eecCC-HHhhcCcCCEEEEcCCCChhhhhcccHH-HHccCCCCC----EEEEcC
Q 026360 80 -A-----KFEED-LDTMLPKCDIVVVNTPLTEKTRGMFDKD-RIAKMKKGV----LIVNNA 128 (240)
Q Consensus 80 -~-----~~~~~-l~ell~~aDiVvl~lp~~~~t~~~i~~~-~l~~mk~ga----ilIN~s 128 (240)
+ .+... +++.+..+|++|.++-..+.+-.++.++ ..+.||+|. +|+|++
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 0 00111 3567889999999997666677888887 777899998 899986
No 453
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=95.41 E-value=0.17 Score=47.32 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=61.2
Q ss_pred CeEEEEcc-ChHHHHHHHHhccC-------CC--EEEEEcCCCCChhHH-----Hh---c--CceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPF-------NC--NLLYHDRVKMDPQLE-----KE---T--GAKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~-------G~--~V~~~d~~~~~~~~~-----~~---~--g~~~~~~l~ell~~aDiV 96 (240)
.+|+|||. |.+|..+|..|... |. +++.+|.+....+.. .. + .+....+..+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 48999999 99999999988755 44 688889865432211 11 1 122123445778999999
Q ss_pred EEcCCC--Ch-hh--------hhccc--HHHHcc-CCCCCEEEEcCCCcccCHHHHH
Q 026360 97 VVNTPL--TE-KT--------RGMFD--KDRIAK-MKKGVLIVNNARGAIMDTQAVV 139 (240)
Q Consensus 97 vl~lp~--~~-~t--------~~~i~--~~~l~~-mk~gailIN~srg~~vd~~aL~ 139 (240)
+++... .+ .+ ..++. .+.+.. ..|++++|.++ ..+|.-..+
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v 235 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI 235 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence 998643 11 11 11121 123334 46789999887 445544433
No 454
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.40 E-value=0.055 Score=48.29 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=58.8
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDiVvl~lp~ 102 (240)
.|.+|.|.|.|.+|..+++.++..|.+ |++.+++....+.++++|+..+ .++ .++. ...|+++-+...
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG 245 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence 488999999999999999999999995 8888876545555566665321 111 1222 236777766542
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
. . .-.+.++.++++..+|+++
T Consensus 246 ~----~-~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 246 Q----D-TFEQALKVLKPGGTISNVN 266 (351)
T ss_pred H----H-HHHHHHHHhhcCCEEEEec
Confidence 1 1 1234566677777777765
No 455
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.39 E-value=0.03 Score=53.87 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=48.2
Q ss_pred cCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh---------cC------ce----ec---CCHHhhc
Q 026360 34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------TG------AK----FE---EDLDTML 90 (240)
Q Consensus 34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~---------~g------~~----~~---~~l~ell 90 (240)
-.|+++.|.|. |.||+.+++.|...|++|++++|+......... .| +. .+ +++++.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 36899999995 999999999999999999999886543321110 01 11 11 2344567
Q ss_pred CcCCEEEEcCCC
Q 026360 91 PKCDIVVVNTPL 102 (240)
Q Consensus 91 ~~aDiVvl~lp~ 102 (240)
..+|+||.++..
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 889999888753
No 456
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.37 E-value=0.0087 Score=45.57 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=57.5
Q ss_pred hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCCChhhhhcccHHH
Q 026360 46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPLTEKTRGMFDKDR 114 (240)
Q Consensus 46 ~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDiVvl~lp~~~~t~~~i~~~~ 114 (240)
.||...++.++..|.+|++.++++.+.+.++++|+..+ .++ .++.. ..|+|+-|++.. + .....
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~-~----~~~~~ 75 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSG-D----TLQEA 75 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSH-H----HHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcH-H----HHHHH
Confidence 37888999999999999999998777778888885422 112 23444 489999998732 1 23456
Q ss_pred HccCCCCCEEEEcC
Q 026360 115 IAKMKKGVLIVNNA 128 (240)
Q Consensus 115 l~~mk~gailIN~s 128 (240)
++.++++..++.++
T Consensus 76 ~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 76 IKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHEEEEEEEEEES
T ss_pred HHHhccCCEEEEEE
Confidence 77899999999997
No 457
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.37 E-value=0.052 Score=47.65 Aligned_cols=88 Identities=23% Similarity=0.186 Sum_probs=58.5
Q ss_pred CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCCC
Q 026360 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDiVvl~lp~~ 103 (240)
.|.++.|.| .|.+|..+++.++..|++|++.+++....+.++++|+..+ .++.+.+ ...|+|+-++..
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~- 221 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG- 221 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH-
Confidence 588999999 6999999999999999999888876655566666665321 1221111 235666665541
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
+ .....++.++++..++.++
T Consensus 222 ~-----~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 222 E-----FSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred H-----HHHHHHHhhccCCEEEEEc
Confidence 1 1235566677777777765
No 458
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.36 E-value=0.055 Score=48.63 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=44.4
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCC---hhHHHhc---------CceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKET---------GAKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~---~~~~~~~---------g~~~~~~l~ell~~aDiV 96 (240)
.+|+|||. |.+|..+|..|...|. ++..+|..... ...+.++ +.....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998886664 79999985311 1111110 112223556778999999
Q ss_pred EEcCC
Q 026360 97 VVNTP 101 (240)
Q Consensus 97 vl~lp 101 (240)
+++.-
T Consensus 84 VitAG 88 (323)
T TIGR01759 84 LLVGA 88 (323)
T ss_pred EEeCC
Confidence 99864
No 459
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.35 E-value=0.09 Score=54.02 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=59.7
Q ss_pred HHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh---------------------hH
Q 026360 16 QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP---------------------QL 74 (240)
Q Consensus 16 ~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~---------------------~~ 74 (240)
+..+| |-.... .-.=.|++|+|||-|..|-+.|..|...|+.|++|.|+.... +.
T Consensus 1769 af~eg-wm~p~p---p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~l 1844 (2142)
T KOG0399|consen 1769 AFEEG-WMKPCP---PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDL 1844 (2142)
T ss_pred HHHhc-CCccCC---cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHH
Confidence 34444 865432 223479999999999999999999999999999998764320 11
Q ss_pred HHhcCceec--------CCHHhhcCcCCEEEEcCCCC
Q 026360 75 EKETGAKFE--------EDLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 75 ~~~~g~~~~--------~~l~ell~~aDiVvl~lp~~ 103 (240)
....|+..+ -+++++.++-|.|+++...|
T Consensus 1845 l~~egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1845 LEQEGIRFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred HHhhCceEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence 122344322 37899999999999986543
No 460
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=95.34 E-value=0.059 Score=47.75 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=60.0
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec----CCH----Hhhc--CcCCEEEEcCCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL----DTML--PKCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~~l----~ell--~~aDiVvl~lp~~ 103 (240)
.|.+|.|.|.|.+|+.+++.++..|+ +|++.+..........++|+..+ .+. .++. ...|+++-+....
T Consensus 167 ~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~ 246 (344)
T cd08284 167 PGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGGA 246 (344)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCCH
Confidence 58999999999999999999999997 78887655434444455563211 111 1222 2478777766521
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~srg 130 (240)
. .....+..++++..+|.++..
T Consensus 247 ~-----~~~~~~~~l~~~g~~v~~g~~ 268 (344)
T cd08284 247 A-----ALDLAFDLVRPGGVISSVGVH 268 (344)
T ss_pred H-----HHHHHHHhcccCCEEEEECcC
Confidence 1 123556778888888888744
No 461
>PRK15076 alpha-galactosidase; Provisional
Probab=95.34 E-value=0.029 Score=52.40 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=44.1
Q ss_pred CeEEEEccChHHHHHHH--Hh---ccC-CCEEEEEcCCCCChhHH--------HhcC----ceecCCHHhhcCcCCEEEE
Q 026360 37 KTVGTVGCGRIGKLLLQ--RL---KPF-NCNLLYHDRVKMDPQLE--------KETG----AKFEEDLDTMLPKCDIVVV 98 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~--~l---~~~-G~~V~~~d~~~~~~~~~--------~~~g----~~~~~~l~ell~~aDiVvl 98 (240)
++|+|||.|.+|...+. .+ .++ |.+|+.+|.++...+.. ...+ +....++.+.+++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999955543 22 223 56899999875333311 1112 2334677899999999999
Q ss_pred cCCC
Q 026360 99 NTPL 102 (240)
Q Consensus 99 ~lp~ 102 (240)
+...
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 8753
No 462
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.32 E-value=0.057 Score=50.37 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=67.9
Q ss_pred eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-----HHHhcCceec--CCHH-----hhcCcCCEEEEcCCCC--
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEKETGAKFE--EDLD-----TMLPKCDIVVVNTPLT-- 103 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-----~~~~~g~~~~--~~l~-----ell~~aDiVvl~lp~~-- 103 (240)
+|.|||.|..|.+.|+.|...|++|.++|....... .....|+... ...+ +.+.+.|.|+......
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 689999999999999999999999999997543211 2334465432 1121 4677899888754222
Q ss_pred -hhhh-------hcccH-HHH-ccCCC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 104 -EKTR-------GMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 104 -~~t~-------~~i~~-~~l-~~mk~-gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
|... .++.+ +.+ ..+++ ..+-|--+.|+.-...-|.+.|+...
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 2111 12322 222 33333 34556666788888887778887633
No 463
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.32 E-value=0.086 Score=49.61 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=51.7
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC---------------------hhHHHhcCceec------C--
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE------E-- 84 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~------~-- 84 (240)
-.+++|.|||.|..|...|..|+..|++|+++++.+.. .+.+.+.|+... .
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 218 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI 218 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence 37899999999999999999999999999999865421 233445665421 1
Q ss_pred CHHhhcCcCCEEEEcCCCC
Q 026360 85 DLDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 85 ~l~ell~~aDiVvl~lp~~ 103 (240)
.++++....|.|++++...
T Consensus 219 ~~~~~~~~~D~vilAtGa~ 237 (467)
T TIGR01318 219 SLDDLLEDYDAVFLGVGTY 237 (467)
T ss_pred CHHHHHhcCCEEEEEeCCC
Confidence 3455556799999987644
No 464
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=95.31 E-value=0.17 Score=45.08 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=49.2
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh-h--------HHHhcCce--ecCCHHhhcCcCCEEEEcC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETGAK--FEEDLDTMLPKCDIVVVNT 100 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g~~--~~~~l~ell~~aDiVvl~l 100 (240)
.+.|++|+++|- -++.++++..+..+|++|.+..|..... + .++..|.. ..+++ +.++++|+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 589999999996 4788999999999999999998754222 1 12233543 34565 5689999998844
No 465
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=95.29 E-value=0.069 Score=48.21 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=50.2
Q ss_pred cc-CCCeEEEEccC-------hHHHHHHHHhccCCCEEEEEcC-CCC--ChhH-------HHhcC--ceecCCHHhhcCc
Q 026360 33 DL-EGKTVGTVGCG-------RIGKLLLQRLKPFNCNLLYHDR-VKM--DPQL-------EKETG--AKFEEDLDTMLPK 92 (240)
Q Consensus 33 ~l-~g~~vgIIG~G-------~iG~~~A~~l~~~G~~V~~~d~-~~~--~~~~-------~~~~g--~~~~~~l~ell~~ 92 (240)
.+ .|++|+|+|.| ++.++++..+..+|++|.+..| ... +.+. +...| +...+++++.+++
T Consensus 165 ~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~ 244 (335)
T PRK04523 165 TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAG 244 (335)
T ss_pred CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC
Confidence 37 79999876643 7899999999999999999998 432 2111 12334 4456799999999
Q ss_pred CCEEEEcC
Q 026360 93 CDIVVVNT 100 (240)
Q Consensus 93 aDiVvl~l 100 (240)
+|+|..-.
T Consensus 245 aDvvy~~~ 252 (335)
T PRK04523 245 ADVVYAKS 252 (335)
T ss_pred CCEEEece
Confidence 99998754
No 466
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.28 E-value=0.05 Score=50.77 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=69.0
Q ss_pred eEEEEccChHHHH-HHHHhccCCCEEEEEcCCCCC-hhHHHhcCceecC-CHHhhcCcCCEEEEcC--C-CChhhh----
Q 026360 38 TVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEE-DLDTMLPKCDIVVVNT--P-LTEKTR---- 107 (240)
Q Consensus 38 ~vgIIG~G~iG~~-~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~-~l~ell~~aDiVvl~l--p-~~~~t~---- 107 (240)
++-+||.|..|.+ +|+.|+..|++|.++|..... .+..++.|+.... .-.+.+.++|+|+..- | ..|...
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 3679999999998 999999999999999975432 1223344665432 1234567899888763 2 222211
Q ss_pred ---hcccH-HHHcc-CC-CCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 108 ---GMFDK-DRIAK-MK-KGVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 108 ---~~i~~-~~l~~-mk-~gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
.++.+ +++.. ++ ...+-|--+.|+.=...-+...|+...
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 12322 33322 32 235566666788888888888887654
No 467
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.28 E-value=0.076 Score=46.02 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=60.0
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-cCCHHhhc-CcCCEEEEcCCCChhhhhccc
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~ell-~~aDiVvl~lp~~~~t~~~i~ 111 (240)
.|.++.|.|. |.+|+.+++.++..|.+|++.++++...+.+++.|+.. ....+++. ...|+++-++.. . ..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~----~--~~ 205 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGG----P--QL 205 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCc----H--HH
Confidence 5899999998 99999999999999999988887655555555566521 11111111 246777666541 1 12
Q ss_pred HHHHccCCCCCEEEEcC
Q 026360 112 KDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 112 ~~~l~~mk~gailIN~s 128 (240)
.+.++.++++..+|+++
T Consensus 206 ~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 206 ARALELLAPGGTVVSVG 222 (305)
T ss_pred HHHHHHhcCCCEEEEEe
Confidence 45677788888888876
No 468
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=95.28 E-value=0.077 Score=46.89 Aligned_cols=89 Identities=25% Similarity=0.324 Sum_probs=58.3
Q ss_pred CCCeEEEEccChHHHHHHHHhcc-CCCEEEEEcCCCCChhHHHhcCceec------CCHH----hhcCcCCEEEEcCCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE------EDLD----TMLPKCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~----ell~~aDiVvl~lp~~ 103 (240)
.|.+|.|.|.|.+|..+++.++. .|.+|++.++++...+.++++|+..+ .+.. +.....|+++++.. .
T Consensus 162 ~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~-~ 240 (338)
T PRK09422 162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAV-A 240 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCC-C
Confidence 57899999999999999999997 59999999887666666666665321 1111 12233565555543 1
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.. ...+.++.++++..++.++
T Consensus 241 ~~----~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 241 KA----AFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred HH----HHHHHHHhccCCCEEEEEe
Confidence 11 1235566777777777775
No 469
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.27 E-value=0.061 Score=48.41 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=62.8
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceecCCH----------HhhcC-cCCEEEEcCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL----------DTMLP-KCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l----------~ell~-~aDiVvl~lp~ 102 (240)
.|.+++|+|+|.+|-+..+.++..|.. |++.|.++.+.++++++|+..+-+. .++-. .+|+.+-+.-.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~ 264 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGN 264 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCC
Confidence 689999999999999999999999985 8999999888899999998533222 22333 57787777753
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
.+ .-++.+....++...|-++
T Consensus 265 ~~-----~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 265 VE-----VMRQALEATHRGGTSVIIG 285 (366)
T ss_pred HH-----HHHHHHHHHhcCCeEEEEe
Confidence 32 1234444455554444443
No 470
>PRK08324 short chain dehydrogenase; Validated
Probab=95.26 E-value=0.035 Score=54.66 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=34.7
Q ss_pred cccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360 32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM 70 (240)
Q Consensus 32 ~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~ 70 (240)
..+.|+++.|.| .|.||..+|+.|...|++|++.+++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 357899999999 599999999999999999999998753
No 471
>PRK12861 malic enzyme; Reviewed
Probab=95.24 E-value=0.17 Score=50.32 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=73.0
Q ss_pred ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCC-----CC-------hhHHHhcCceecCCHHhhcCcCCE
Q 026360 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----MD-------PQLEKETGAKFEEDLDTMLPKCDI 95 (240)
Q Consensus 31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~-----~~-------~~~~~~~g~~~~~~l~ell~~aDi 95 (240)
+.+|...+|.|.|.|.-|..+|+.+...|. +++.+|+.. .. ...++.. ...++.|+++.+|+
T Consensus 184 gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~---~~~~L~eai~~adv 260 (764)
T PRK12861 184 GKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQET---DARTLAEVIGGADV 260 (764)
T ss_pred CCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc---CCCCHHHHHhcCCE
Confidence 567889999999999999999999999998 688888543 11 1122221 22589999999997
Q ss_pred EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc
Q 026360 96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI 132 (240)
Q Consensus 96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~ 132 (240)
++=+ . ..+.++++.++.|.+.++|.=.|....
T Consensus 261 liG~-S----~~g~ft~e~v~~Ma~~PIIFaLsNPtp 292 (764)
T PRK12861 261 FLGL-S----AGGVLKAEMLKAMAARPLILALANPTP 292 (764)
T ss_pred EEEc-C----CCCCCCHHHHHHhccCCEEEECCCCCc
Confidence 7543 2 248899999999999999999998764
No 472
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.20 E-value=0.035 Score=48.64 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=45.6
Q ss_pred CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360 37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp 101 (240)
+++.|.| .|.+|+.+++.|...|++|+++++++.........++.. .++++++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4788998 599999999999999999999998654322221123221 1245567888998877654
No 473
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.19 E-value=0.021 Score=44.26 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=29.8
Q ss_pred CCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360 36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK 69 (240)
Q Consensus 36 g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~ 69 (240)
.++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 6799999999999999999999898 689998764
No 474
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=95.17 E-value=0.058 Score=48.45 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=61.4
Q ss_pred CCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCC-----HHh----hcC--cCCEEEEcCCCC
Q 026360 36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED-----LDT----MLP--KCDIVVVNTPLT 103 (240)
Q Consensus 36 g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~-----l~e----ll~--~aDiVvl~lp~~ 103 (240)
|.+|.|.| .|.+|....+.++++|+.+++...++.+.+.++++|...+.+ +.+ +.. ..|+|+-++-
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG-- 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG-- 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC--
Confidence 89999999 899999999999999976555554444455777788643222 333 332 4799988875
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
...+ .+.++.++++..++.++
T Consensus 221 ---~~~~-~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 221 ---GDTF-AASLAALAPGGRLVSIG 241 (326)
T ss_pred ---HHHH-HHHHHHhccCCEEEEEe
Confidence 1222 34677788888888876
No 475
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.16 E-value=0.075 Score=46.96 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=33.9
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 69 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~ 69 (240)
..|...+|.|+|+|.+|..+|+.|...|.. ++.+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 468999999999999999999999999985 88998754
No 476
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.15 E-value=0.051 Score=48.85 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=43.9
Q ss_pred CeEEEEcc-ChHHHHHHHHhccCC-------CEEEEEcCCCCC--hh-----HHH-----hcCceecCCHHhhcCcCCEE
Q 026360 37 KTVGTVGC-GRIGKLLLQRLKPFN-------CNLLYHDRVKMD--PQ-----LEK-----ETGAKFEEDLDTMLPKCDIV 96 (240)
Q Consensus 37 ~~vgIIG~-G~iG~~~A~~l~~~G-------~~V~~~d~~~~~--~~-----~~~-----~~g~~~~~~l~ell~~aDiV 96 (240)
.+|+|+|. |.+|..++..|...+ .+|..+|+.+.. .+ ... ...+....++.+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 36999998 999999999987643 489999985421 11 000 00111234666889999999
Q ss_pred EEcCC
Q 026360 97 VVNTP 101 (240)
Q Consensus 97 vl~lp 101 (240)
+.+.-
T Consensus 83 I~tAG 87 (325)
T cd01336 83 ILVGA 87 (325)
T ss_pred EEeCC
Confidence 88764
No 477
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=95.11 E-value=0.038 Score=49.68 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=42.2
Q ss_pred eEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCCh-hHHHhc-----------CceecCCHHhhcCcCCEEE
Q 026360 38 TVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDP-QLEKET-----------GAKFEEDLDTMLPKCDIVV 97 (240)
Q Consensus 38 ~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~~-~~~~~~-----------g~~~~~~l~ell~~aDiVv 97 (240)
+|+|||. |.+|..+|..|...|. ++..+|..+... ...... ++....+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999998876444 588999753210 100000 1111224467889999999
Q ss_pred EcCC
Q 026360 98 VNTP 101 (240)
Q Consensus 98 l~lp 101 (240)
++.-
T Consensus 81 itAG 84 (324)
T TIGR01758 81 LVGA 84 (324)
T ss_pred EcCC
Confidence 8864
No 478
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.1 Score=43.96 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=32.6
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 69 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~ 69 (240)
.+.|+++.|.|. |.||+.+++.|...|++|++.+++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 9999999999999999999888754
No 479
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.06 E-value=0.075 Score=47.99 Aligned_cols=107 Identities=18% Similarity=0.293 Sum_probs=61.1
Q ss_pred CeEEEEccChHHHHHHHHhcc--------CC--CEEEEE-cCCC-------CChhHHH----hcC----ce-----ecCC
Q 026360 37 KTVGTVGCGRIGKLLLQRLKP--------FN--CNLLYH-DRVK-------MDPQLEK----ETG----AK-----FEED 85 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~A~~l~~--------~G--~~V~~~-d~~~-------~~~~~~~----~~g----~~-----~~~~ 85 (240)
.+|+|+|+|++|+.+++.+.. +| .+|.++ |++. ...+... +.+ +. ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999998866 56 555544 4321 1111111 111 00 0116
Q ss_pred HHhhc--CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCcc
Q 026360 86 LDTML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 148 (240)
Q Consensus 86 l~ell--~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i~ 148 (240)
+++++ .++|+|+-+.+.. ....+ ..+.++.|.-+|-...|.+- ..++|.+..++++..
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~~~----~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~ 143 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAHEW----HLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP 143 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHHHH----HHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence 67777 4799999887522 22222 22335666667766665443 556777766665544
No 480
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.03 E-value=0.058 Score=49.70 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=32.7
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~ 68 (240)
..|.+.+|.|||+|.+|..+|+.|...|. ++.++|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 46899999999999999999999998887 58888864
No 481
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=95.01 E-value=0.079 Score=46.89 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=57.2
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCcee-cC----CHHhhc---CcCCEEEEcCCCChh
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKF-EE----DLDTML---PKCDIVVVNTPLTEK 105 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~-~~----~l~ell---~~aDiVvl~lp~~~~ 105 (240)
.|.+|.|.|.|.+|+.+++.++..|. +|++.++++...+..++.|+.. +. ++.++. ...|+++-+.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~- 243 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPA- 243 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHH-
Confidence 78999999999999999999999998 7888887654444445555421 11 111222 12577766654211
Q ss_pred hhhcccHHHHccCCCCCEEEEcC
Q 026360 106 TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 106 t~~~i~~~~l~~mk~gailIN~s 128 (240)
...+.++.+++++.+|+++
T Consensus 244 ----~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 244 ----ALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ----HHHHHHHHHhcCCEEEEEe
Confidence 1234556677777777765
No 482
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=95.00 E-value=0.043 Score=47.18 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=55.1
Q ss_pred CEEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHH
Q 026360 60 CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV 138 (240)
Q Consensus 60 ~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL 138 (240)
.+|++++|++.+... ...+|+....+..++++++|+|+++++ ......++ .+.-..+.++.+||.++-| +..+.|
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl-~~l~~~~~~~~~ivS~~ag--i~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL-SELKSEKGKDKLLISIAAG--VTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH-HHHhhhccCCCEEEEecCC--CCHHHH
Confidence 478999997644333 344677767788899999999999998 23333332 2332335667899999866 677777
Q ss_pred HHHHHh
Q 026360 139 VDACSS 144 (240)
Q Consensus 139 ~~aL~~ 144 (240)
.+.+..
T Consensus 86 ~~~~~~ 91 (245)
T TIGR00112 86 SQLLGG 91 (245)
T ss_pred HHHcCC
Confidence 777753
No 483
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.99 E-value=0.055 Score=37.94 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.2
Q ss_pred eEEEEccChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360 38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM 70 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~ 70 (240)
++.|||.|.+|-.+|..++.+|.+|+.+.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999988653
No 484
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.98 E-value=0.045 Score=49.48 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=48.9
Q ss_pred eEEEEc-cChHHHHHHHHhccCCCE---EEEEcCCCCChhHHHhcCce-ecCCH-HhhcCcCCEEEEcCCCChhhhhccc
Q 026360 38 TVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKTRGMFD 111 (240)
Q Consensus 38 ~vgIIG-~G~iG~~~A~~l~~~G~~---V~~~d~~~~~~~~~~~~g~~-~~~~l-~ell~~aDiVvl~lp~~~~t~~~i~ 111 (240)
+|+|+| -|.+|+.+++.|...++. +.++.+...........+.. .+.++ .+.+.++|+++.|+|.. .+... .
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~-a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEF-A 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHH-H
Confidence 589999 799999999999886665 33333322111111111211 11111 23458899999999843 22222 1
Q ss_pred HHHHccCCCCCEEEEcC
Q 026360 112 KDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 112 ~~~l~~mk~gailIN~s 128 (240)
... ++.|+.+||.+
T Consensus 79 ~~~---~~~G~~VID~s 92 (339)
T TIGR01296 79 PKA---AKCGAIVIDNT 92 (339)
T ss_pred HHH---HHCCCEEEECC
Confidence 111 35677888777
No 485
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.94 E-value=0.071 Score=53.61 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=70.8
Q ss_pred CeEEEEccChHHHHH-HHHhccCCCEEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCcCCEEEEcCC---CChhh----
Q 026360 37 KTVGTVGCGRIGKLL-LQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNTP---LTEKT---- 106 (240)
Q Consensus 37 ~~vgIIG~G~iG~~~-A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~-~~l~ell~~aDiVvl~lp---~~~~t---- 106 (240)
+++.|+|+|..|.+. |+.|+..|++|.++|..... .....+.|+... ....+.+..+|+|+..-. .+|..
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 469999999999998 99999999999999975422 222344566542 123356778999887632 22221
Q ss_pred ---hhcccH-HHHcc-CCC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360 107 ---RGMFDK-DRIAK-MKK-GVLIVNNARGAIMDTQAVVDACSSGH 146 (240)
Q Consensus 107 ---~~~i~~-~~l~~-mk~-gailIN~srg~~vd~~aL~~aL~~g~ 146 (240)
..++.+ +.+.. ++. ..+-|--+.|+.=...-+...|++..
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 122332 33333 232 35666666788888888888888744
No 486
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=94.93 E-value=0.11 Score=47.20 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=38.3
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 80 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 80 (240)
.|.++.|.|. |.+|..+++.++..|+++++.+++....+.++++|+
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~ 239 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGA 239 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCC
Confidence 4789999997 999999999999999998888876655566666664
No 487
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.93 E-value=0.086 Score=48.56 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=52.9
Q ss_pred cCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 026360 34 LEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 101 (240)
Q Consensus 34 l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp 101 (240)
..|++|+|+|+ -.-+..+++.|...|.+|.+|||.-.... .++....+++++++++||.|++..-
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRM 368 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence 47899999997 34677899999999999999998632222 3477788999999999999988764
No 488
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=94.91 E-value=0.095 Score=46.56 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=58.1
Q ss_pred CCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDiVvl~lp~ 102 (240)
.|.++.|.|.|.+|+.+++.++..| .+|++++++......++++|+... .++ .++. ...|+++-++..
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGI 245 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 5889999999999999999999999 788888775544444455554211 111 1222 247777776642
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
. . . ....++.++++..+|+++
T Consensus 246 ~-~---~-~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 246 P-A---T-FELCQELVAPGGHIANVG 266 (345)
T ss_pred H-H---H-HHHHHHhccCCcEEEEec
Confidence 1 1 1 234446678888888875
No 489
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=94.89 E-value=0.088 Score=45.28 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=56.9
Q ss_pred CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec---C--C----HHhhc--CcCCEEEEcCCC
Q 026360 35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E--D----LDTML--PKCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~--~----l~ell--~~aDiVvl~lp~ 102 (240)
.|.++.|.| .|.+|..+++.++..|.+|++.+.++...+.+...|+... . + +.++. ...|+++.++..
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~ 215 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGK 215 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCc
Confidence 588999999 6999999999999999999888875544444444554211 0 1 11122 135666665541
Q ss_pred ChhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360 103 TEKTRGMFDKDRIAKMKKGVLIVNNARG 130 (240)
Q Consensus 103 ~~~t~~~i~~~~l~~mk~gailIN~srg 130 (240)
. .....++.++++..++.++..
T Consensus 216 -----~-~~~~~~~~l~~~g~~v~~g~~ 237 (320)
T cd05286 216 -----D-TFEGSLDSLRPRGTLVSFGNA 237 (320)
T ss_pred -----H-hHHHHHHhhccCcEEEEEecC
Confidence 1 123445667777777776643
No 490
>PRK06128 oxidoreductase; Provisional
Probab=94.88 E-value=0.091 Score=46.07 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=31.4
Q ss_pred ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCC
Q 026360 33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRV 68 (240)
Q Consensus 33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~ 68 (240)
.+.||++.|.|. |.||+.+|+.|...|++|++..++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999999995 899999999999999998876553
No 491
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=94.86 E-value=0.14 Score=46.18 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=59.7
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCHHh-hc----CcCCEEEEcCCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDT-ML----PKCDIVVVNTPLT 103 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~e-ll----~~aDiVvl~lp~~ 103 (240)
.|++|.|.|.|.+|..+++.+++.|.+ |++.++++.+.+.+.+.|+..+ .++.+ +. ...|+++-++...
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~ 265 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP 265 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence 488999999999999999999999994 8888876545555555554211 12211 11 3467777776421
Q ss_pred hhhhhcccHHHHccCCCCCEEEEcCC
Q 026360 104 EKTRGMFDKDRIAKMKKGVLIVNNAR 129 (240)
Q Consensus 104 ~~t~~~i~~~~l~~mk~gailIN~sr 129 (240)
+ . ..+.++.+++++.+|.++.
T Consensus 266 ~----~-~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 266 A----V-IEQAVDALAPRGTLALVGA 286 (365)
T ss_pred H----H-HHHHHHHhccCCEEEEeCc
Confidence 1 1 2355666778888887764
No 492
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=94.85 E-value=0.14 Score=47.10 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=61.3
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEE-EEcCCCCChhHHHhcCceecC-----CHHh----hc--CcCCEEEEcCCC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEE-----DLDT----ML--PKCDIVVVNTPL 102 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~-----~l~e----ll--~~aDiVvl~lp~ 102 (240)
.|.+|.|.|.|.+|..+++.++..|.+++ +.|+++...+.++++|+..+. ++.+ +. ...|+++-++..
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~ 264 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGF 264 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCCC
Confidence 58899999999999999999999999854 456655456667777764221 2222 22 246888877753
Q ss_pred Chh----------hhhcccHHHHccCCCCCEEEEcC
Q 026360 103 TEK----------TRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 103 ~~~----------t~~~i~~~~l~~mk~gailIN~s 128 (240)
... ....+ .+.++.++++..++.+|
T Consensus 265 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 265 EARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPG 299 (393)
T ss_pred ccccccccccccchHHHH-HHHHHHhhCCCEEEEee
Confidence 210 00112 34567788888888876
No 493
>PRK06182 short chain dehydrogenase; Validated
Probab=94.84 E-value=0.063 Score=46.17 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee----cCC---HHhhcC-------cCCEEEEc
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EED---LDTMLP-------KCDIVVVN 99 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~---l~ell~-------~aDiVvl~ 99 (240)
.++++.|.|. |.||+.+|+.|...|++|++.+++....+.....++.. +.+ ++++++ ..|+++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ 81 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN 81 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4789999995 89999999999999999999988653332222223321 122 223333 57999887
Q ss_pred CC
Q 026360 100 TP 101 (240)
Q Consensus 100 lp 101 (240)
..
T Consensus 82 ag 83 (273)
T PRK06182 82 AG 83 (273)
T ss_pred CC
Confidence 64
No 494
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.82 E-value=0.056 Score=47.42 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=35.0
Q ss_pred ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360 31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 69 (240)
Q Consensus 31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~ 69 (240)
+..+.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45688999999995 9999999999999999999999864
No 495
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.81 E-value=0.092 Score=46.72 Aligned_cols=90 Identities=27% Similarity=0.289 Sum_probs=57.4
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CC-------HHhhcC--cCCEEEE
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----ED-------LDTMLP--KCDIVVV 98 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~-------l~ell~--~aDiVvl 98 (240)
-.|.++.|.|.|.+|..+++.++.+|.+ |++.+++....+...++|...+ .+ +.+... ..|+|+-
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence 4589999999999999999999999998 8777765544444444554211 01 112222 2677777
Q ss_pred cCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360 99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128 (240)
Q Consensus 99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~s 128 (240)
+....+ .....++.++++..++.++
T Consensus 241 ~~g~~~-----~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 241 CTGAES-----CIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCHH-----HHHHHHHHhhcCCEEEEEc
Confidence 654211 1234566677777777765
No 496
>PRK14851 hypothetical protein; Provisional
Probab=94.78 E-value=0.081 Score=52.16 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=31.9
Q ss_pred cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360 32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 68 (240)
Q Consensus 32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~ 68 (240)
..|++++|+|+|+|.+|..++..|...|. ++..+|.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 46899999999999999999999998887 46677643
No 497
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.74 E-value=0.049 Score=52.42 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=49.6
Q ss_pred cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC---------------------ChhHHHhcCceec------C--
Q 026360 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM---------------------DPQLEKETGAKFE------E-- 84 (240)
Q Consensus 34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~---------------------~~~~~~~~g~~~~------~-- 84 (240)
-.|++|.|||.|.+|-..|..|+..|++|+++++.+. ..+.+.+.|+... .
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 4699999999999999999999999999999985421 1123445665421 1
Q ss_pred CHHhhcCcCCEEEEcCCC
Q 026360 85 DLDTMLPKCDIVVVNTPL 102 (240)
Q Consensus 85 ~l~ell~~aDiVvl~lp~ 102 (240)
+.+++-...|+|++++..
T Consensus 215 ~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 215 TLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CHHHHHhhCCEEEEeeCC
Confidence 233444568999998753
No 498
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.74 E-value=0.13 Score=50.54 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=50.1
Q ss_pred CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC---------------------hhHHHhcCceec--------CC
Q 026360 35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------ED 85 (240)
Q Consensus 35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~~ 85 (240)
.+++|.|||.|..|...|..|+..|++|+++++.+.. .+.....|++.. .+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~ 271 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT 271 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence 6899999999999999999999999999999875421 112234455421 13
Q ss_pred HHhhcCcCCEEEEcCCCC
Q 026360 86 LDTMLPKCDIVVVNTPLT 103 (240)
Q Consensus 86 l~ell~~aDiVvl~lp~~ 103 (240)
++++....|.|++++...
T Consensus 272 ~~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 272 LEELQKEFDAVLLAVGAQ 289 (652)
T ss_pred HHHHHhhcCEEEEEcCCC
Confidence 455555699999987543
No 499
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.73 E-value=0.079 Score=47.89 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=52.3
Q ss_pred CCCeEEEEcc-ChHHHHHHHHhcc--C-CCEEEEEcCCCCChhH--HHhcCceecCCHHhh-cCcCCEEEEcCCCChhhh
Q 026360 35 EGKTVGTVGC-GRIGKLLLQRLKP--F-NCNLLYHDRVKMDPQL--EKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTR 107 (240)
Q Consensus 35 ~g~~vgIIG~-G~iG~~~A~~l~~--~-G~~V~~~d~~~~~~~~--~~~~g~~~~~~l~el-l~~aDiVvl~lp~~~~t~ 107 (240)
++.+|+|||. |.+|+.+.+.|.. + ..++..+......... +....... .++++. +.++|++++++|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v-~~~~~~~~~~~Dvvf~a~p~~---- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTV-QDAAEFDWSQAQLAFFVAGRE---- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEE-EeCchhhccCCCEEEECCCHH----
Confidence 4679999995 9999999999987 4 3355555432211111 11111222 244443 37899999999933
Q ss_pred hcccHHHHccC-CCCCEEEEcC
Q 026360 108 GMFDKDRIAKM-KKGVLIVNNA 128 (240)
Q Consensus 108 ~~i~~~~l~~m-k~gailIN~s 128 (240)
+..+....+ +.|+.+||.|
T Consensus 78 --~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 78 --ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred --HHHHHHHHHHHCCCEEEECC
Confidence 222333322 5688888888
No 500
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.71 E-value=0.073 Score=47.87 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=24.3
Q ss_pred eEEEEccChHHHHHHHHhccC----CCEEEEEcC
Q 026360 38 TVGTVGCGRIGKLLLQRLKPF----NCNLLYHDR 67 (240)
Q Consensus 38 ~vgIIG~G~iG~~~A~~l~~~----G~~V~~~d~ 67 (240)
+|||+|+|+||+.+.+.+... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 589999999999999998764 377776653
Done!