RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026360
(240 letters)
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 124 bits (311), Expect = 4e-36
Identities = 88/178 (49%), Positives = 110/178 (61%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
IL LVRN+LP H G WN+A AYDLE VGTV GRIG +L+RL PF+ +L
Sbjct: 11 ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 70
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
Y DR ++ +EKE + + M P CD+V +N PL +T M + + + K+G
Sbjct: 71 HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA 130
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
IVN ARG + D AV A SG +AGY+GDVW PQPAPKDHPWR MP MTPH+SG
Sbjct: 131 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 188
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 108 bits (271), Expect = 4e-30
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 2/179 (1%)
Query: 3 ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
+L R G + + W + L+ KT+G G G IG+ L +R + F+ +
Sbjct: 13 LLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMD 72
Query: 62 LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
+ Y D + E A F + LD++L +N P T +TR F+K I + +G
Sbjct: 73 IDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 132
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
++VN ARG ++D + VV A +G +A DV+ +P + + +PN + PH+
Sbjct: 133 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGS 190
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 96.6 bits (239), Expect = 2e-25
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L R + W + + GKTVG VG GRIG+L+ QR+ F +
Sbjct: 13 LLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQLVAQRIAAFGAYV 70
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+ +D + P + G + D +L + D + V+ P T +T G+ DK+ +AK K GV
Sbjct: 71 VAYDP-YVSPARAAQLGIELLSL-DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 128
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
+IVN ARG ++D A+ DA + GH+ DV+ +P D P + +TPH+
Sbjct: 129 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHL 183
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 95.8 bits (237), Expect = 3e-25
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L+L+R + + G N +A +++ GK +G +G G IG L + +
Sbjct: 13 LLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 70
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
++D P A + L +L D+V ++ P T+ M I+ MK G
Sbjct: 71 YFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 126
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHV 178
L++N +RG ++D A+ DA +S H+AG + DV+ +PA P P N +TPH+
Sbjct: 127 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 186
Query: 179 SG 180
G
Sbjct: 187 GG 188
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 90.9 bits (224), Expect = 3e-23
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 7/182 (3%)
Query: 3 ILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
IL L R H + G + VA A + G+T+G +G GR+G+ + R K
Sbjct: 11 ILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKA 70
Query: 58 FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
F N+L++D + +E+ G + L +L D V ++ L E + + + +
Sbjct: 71 FGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 129
Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTP 176
M++G +VN ARG ++D +A+ A G I G + DV +P P + PN TP
Sbjct: 130 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 189
Query: 177 HV 178
H
Sbjct: 190 HA 191
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 66.0 bits (159), Expect = 8e-14
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
++ ++R +V + A ++ + VG VG G IG++ +Q ++ F
Sbjct: 10 IQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGA 67
Query: 61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
++ +D + E + + LD + + D++ ++ P M + + IAKMK+
Sbjct: 68 KVITYDIFRNPEL---EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ 124
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY------------ 168
V+IVN +RG ++DT AV+ SG I GY+ DV+ + + W
Sbjct: 125 DVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLI 184
Query: 169 -MPNQAMTPHV 178
PN +TP
Sbjct: 185 ARPNVLVTPKT 195
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 64.1 bits (154), Expect = 3e-13
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
L L+RN Q+ +G++ AG + +L +TVG +G G IG++ ++ K F +
Sbjct: 13 TLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKV 71
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
+ +D M L+ + + D++ ++ P E+ + ++ MK G
Sbjct: 72 IAYDPYPMKGDHPD----FDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGA 127
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA-------------PKDHPWRYM 169
+++N AR ++DTQA++ SG +AG D + + P M
Sbjct: 128 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 187
Query: 170 PNQAMTPHVSG 180
PN ++PH++
Sbjct: 188 PNVVLSPHIAY 198
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 59.0 bits (141), Expect = 2e-11
Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 10/179 (5%)
Query: 3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
+L + + ++ G++ ++G+ V +G G IG + + L +
Sbjct: 12 LLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQV 68
Query: 63 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
R + +F L+ L + V PL + TRG+ +A M +
Sbjct: 69 RGFSRTPKEGP------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDA 122
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQPAPKDHPWRYMPNQAMTPHVSG 180
+ VN R ++D V+ ++ DVW KD + +PN TP V+G
Sbjct: 123 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 181
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 44.5 bits (105), Expect = 2e-06
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)
Query: 30 RAYDLE--GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
RA D+ GK G G +GK Q L+ F ++ + ++ A E
Sbjct: 16 RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA-----LQAAMEGYEV 70
Query: 88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN-NARGAIMDTQAVVDACSS 144
T + + T + +MK ++ N +D + + +
Sbjct: 71 TTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE 128
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 35.9 bits (82), Expect = 0.001
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 98
VG +G G +GK + + L +L+ DR GA+ + +CD+++
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 99 NTPLTEKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156
P + + + + I K G ++++ + A + ++ + DA + + V
Sbjct: 63 MLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG 122
Query: 157 PQPAPKDHPWRYM 169
+P D M
Sbjct: 123 GEPKAIDGTLSVM 135
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 35.6 bits (82), Expect = 0.002
Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 24/163 (14%)
Query: 34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-DLDTMLPK 92
++GK V +G G G LK ++ R + K + D+ T +
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLR-SGSATVAKAEAHGLKVADVKTAVAA 72
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
D+V++ TP E ++ ++ +KKG + A + G Y+
Sbjct: 73 ADVVMILTP-DEFQGRLYKEEIEPNLKKGATL----------------AFAHGFSIHYNQ 115
Query: 153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVF 195
D + +A V + I ++
Sbjct: 116 -----VVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIY 153
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 32.4 bits (73), Expect = 0.013
Identities = 7/96 (7%), Positives = 20/96 (20%), Gaps = 1/96 (1%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
L + VG G + + + L L + + +
Sbjct: 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGP-FDE 67
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 128
+ + ++ + + N
Sbjct: 68 TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 32.3 bits (73), Expect = 0.027
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 23/116 (19%)
Query: 39 VGTVGCGRIGKLLLQRL-----------------KPFNCNLLYHDRV---KMDPQLEKET 78
V G G IGK + + R+ + + +E+
Sbjct: 4 VAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEES 63
Query: 79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 134
G ++ ++ DIVV TP G K ++++ + + + D
Sbjct: 64 GIPVAGTVEDLIKTSDIVVDTTP---NGVGAQYKPIYLQLQRNAIFQGGEKAEVAD 116
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 30.8 bits (69), Expect = 0.034
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR---VKMDPQLEKETGAKFEEDLDTM 89
D +GK V +G G G + D +L + D
Sbjct: 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEW 61
Query: 90 LPKCDIVVVNT 100
L D++V +
Sbjct: 62 LMAADLIVASP 72
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 31.8 bits (71), Expect = 0.039
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 2/136 (1%)
Query: 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIV 96
K + +G G +G + L L D V+ GA + D+V
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 61
Query: 97 VVNTPLTEKTRGMFDKDR--IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 154
+ P ++ G++ D +A + G L++ + A + + A +A V
Sbjct: 62 ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPV 121
Query: 155 WNPQPAPKDHPWRYMP 170
+M
Sbjct: 122 SGGTAGAAAGTLTFMV 137
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 30.1 bits (66), Expect = 0.13
Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 3/155 (1%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVV 97
+G VG G IG L L+ L+ R + + E E ++L I+
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157
+ TP+ + V V + + AI + + + + G
Sbjct: 63 LCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGI 122
Query: 158 QPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFF 192
A ++ +TP +
Sbjct: 123 DGAEENLF--VNAPYVLTPTEYTDPEQLACLRSVL 155
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 29.6 bits (66), Expect = 0.23
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLP 91
LEG V G G + K L ++L L+ D K E GA
Sbjct: 36 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGV 95
Query: 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137
CDI + + I ++K V I +A + D +
Sbjct: 96 TCDIFAPCA-----LGAVLNDFTIPQLKAKV-IAGSADNQLKDPRH 135
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 29.7 bits (66), Expect = 0.23
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 2/126 (1%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
L+G TV G G +G L LL D G D +
Sbjct: 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTP 83
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKG--VLIVNNARGAIMDTQAVVDACSSGHIAGY 150
CD+ T + + + +I + A I+ + ++ A AG
Sbjct: 84 CDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 143
Query: 151 SGDVWN 156
+ +
Sbjct: 144 AIHLVG 149
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 28.8 bits (64), Expect = 0.24
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 37 KTVGTVGCGRIGKLLLQRLKPF 58
+ + T G + + +R
Sbjct: 99 RNLITYATGGRPRNIAKREDYI 120
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 29.4 bits (66), Expect = 0.24
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 30 RAYD--LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY---HDRVKMDPQLEKETGAKFEE 84
RA D + GK V G G +GK +K + + +E +E
Sbjct: 15 RATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDE 74
Query: 85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 126
++ K D + T + + + + KMK ++ N
Sbjct: 75 ----IVDKGDFFITCTGNVD----VIKLEHLLKMKNNAVVGN 108
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 29.2 bits (64), Expect = 0.28
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 3/114 (2%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 98
+ VG G + + L+ LK R + E L+ +V V
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 99 NTP---LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 149
P + + D + G L + + + + SS A
Sbjct: 62 IVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKAL 115
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 27.1 bits (60), Expect = 0.56
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP 72
K V +G G++G++L Q +P +
Sbjct: 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA 37
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 28.1 bits (62), Expect = 0.63
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQ-RLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTM- 89
L KTV VG G +GK + + + +L +R L ++ G + + +
Sbjct: 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVD 80
Query: 90 -LPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
L + D+VV T + D +
Sbjct: 81 HLARSDVVVSATAAPHPVIHVDDVREALR 109
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 27.6 bits (60), Expect = 0.81
Identities = 9/57 (15%), Positives = 16/57 (28%)
Query: 37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
K +G GR G +++ L +L D + T +
Sbjct: 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENEL 57
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 27.6 bits (61), Expect = 0.95
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 21/86 (24%)
Query: 37 KTVGTVGCGRIGKLLLQRL------------KPFNCNLLYHDRVK---------MDPQLE 75
K V G G +GK + + K K +L
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLF 61
Query: 76 KETGAKFEEDLDTMLPKCDIVVVNTP 101
++ G + +D ML + DIV+ TP
Sbjct: 62 EKAGIEVAGTVDDMLDEADIVIDCTP 87
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH),
C-terminal (UDP-binding) domain {Streptococcus pyogenes
[TaxId: 1314]}
Length = 108
Score = 26.8 bits (59), Expect = 0.97
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 68 VKMDPQLEKET---GAKFEEDLDTMLPKCDIVVVNTP------LTEK--TRGMFDKD 113
+ +P L K + DL+ + +I+V N + K +R +F +D
Sbjct: 52 IIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRYDNELQDVKNKVYSRDIFGRD 108
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 27.3 bits (60), Expect = 1.0
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 8/63 (12%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 98
V +G G IGK L++ + D + VV
Sbjct: 5 VLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPG--------VVRLDEFQVPSDVSTVVE 56
Query: 99 NTP 101
Sbjct: 57 CAS 59
>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 201
Score = 27.6 bits (60), Expect = 1.1
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 24 VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK 56
V GV + D + G G K ++ K
Sbjct: 165 VVGVQVISLDDAPRGYGEFDAGVPKKFVIDPHK 197
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 27.6 bits (60), Expect = 1.1
Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 28/140 (20%)
Query: 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-------KFEEDLDT 88
GK VG VG G IG + K R + + GA + + +
Sbjct: 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEK 87
Query: 89 MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVL---------------------IVNN 127
D++VV + + V I +
Sbjct: 88 YFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYS 147
Query: 128 ARGAIMDTQAVVDACSSGHI 147
A G+I + ++ S I
Sbjct: 148 ALGSIKELNQLLKLVSEKDI 167
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 27.8 bits (60), Expect = 1.2
Identities = 17/163 (10%), Positives = 42/163 (25%), Gaps = 4/163 (2%)
Query: 43 GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 102
G G IGK ++ R ++ ++K + + L L + +
Sbjct: 11 GTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASL----DDH 66
Query: 103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK 162
+ D + G ++ ++ + +A+ +A + +
Sbjct: 67 QRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHA 126
Query: 163 DHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSH 205
P + +F F L+
Sbjct: 127 LQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQ 169
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 27.2 bits (60), Expect = 1.2
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 39 VGTVGCGRIGKLLLQRLK 56
VG G G IGK + +
Sbjct: 5 VGVNGYGTIGKRVAYAVT 22
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 26.5 bits (57), Expect = 2.4
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 37 KTVGTVGCGRIGKLLLQRLK--PFNCNLLYHDRVKMDPQLEKETGAKFE---EDLDTMLP 91
+ V VG G +G + L+ F + +D + G E
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 61
Query: 92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 134
D V++++P+ I V + +G ++
Sbjct: 62 SPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVY 104
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 26.8 bits (58), Expect = 2.6
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 18 ISGEWNVAGVAYRAYDLEGKTVGTVGCG 45
+G + A L+ K +G + G
Sbjct: 277 PTGCLSFAAARAMKEKLKNKRIGIIISG 304
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 26.5 bits (57), Expect = 2.7
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ 73
K+V +G G + + L L + R +
Sbjct: 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAK 39
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 25.6 bits (55), Expect = 4.4
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 94
V VG GR G + L+ LK + + + + L+ L +
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQE 65
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 25.8 bits (56), Expect = 5.1
Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 9/105 (8%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
KT G G +G ++ L F + + D
Sbjct: 33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGS---------IWNPDGIDPKEL 83
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137
D + + + + + I ++ +LI + + + A
Sbjct: 84 EDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNA 128
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 24.9 bits (54), Expect = 5.1
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP 72
V +G G +GK + + ++ DR P
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP 47
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 25.5 bits (55), Expect = 5.6
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
+EGKTV G G +G+ L+ ++ ++ ++ G E
Sbjct: 28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSD--INGVAYRKEGLNVELIQKNKGLT 85
Query: 93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 126
+V + + + D I K+ + +
Sbjct: 86 GPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPA 119
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 24.9 bits (53), Expect = 7.3
Identities = 12/111 (10%), Positives = 24/111 (21%), Gaps = 23/111 (20%)
Query: 39 VGTVGCGRIGKLLLQRLK-------------PFNCNLLYHDRVKMDPQLEKE-------- 77
V VG G +G+ + + + + D +
Sbjct: 6 VAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLC 65
Query: 78 --TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 126
+ E V + R + A V +V+
Sbjct: 66 MGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVS 116
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 25.2 bits (53), Expect = 7.9
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 41 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD 71
T G++G+ + ++LK N ++ D +D
Sbjct: 7 TGANGQLGREIQKQLKGKNVEVIPTDVQDLD 37
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 24.7 bits (53), Expect = 8.4
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 1/118 (0%)
Query: 31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 90
A+ L+ K + +G G +G L +L P C L + + + G +
Sbjct: 8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP-DLHKSIIPKFGKFIQNKDQPDY 66
Query: 91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148
+ +N +++ R + + + N + + D S I
Sbjct: 67 REDAKRFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIY 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.427
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 936,667
Number of extensions: 43924
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 56
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)