BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026361
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 26/124 (20%)
Query: 87 RLWWFQVCTEVAF----------FQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVD 136
R W +Q CTE+ F P D +R RY LD G++P D
Sbjct: 322 RAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQ-----RYCLDTW------GVWPRPD 370
Query: 137 -STNIYYGGTKIAGSKIVFTNGSQDPWRHAS-KQTSSPDMPSYLITCHNCGHGTDLRGC- 193
++GG A S I+F+NG+ DPW ++ S + + +T H DLR
Sbjct: 371 WLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIA--VTIQGGAHHLDLRASH 428
Query: 194 PQSP 197
P+ P
Sbjct: 429 PEDP 432
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 26/124 (20%)
Query: 87 RLWWFQVCTEVAF----------FQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVD 136
R W +Q CTE+ F P D +R RY LD G++P D
Sbjct: 319 RAWDYQACTEINLTFASNNVTDXFPDLPFTDELRQ-----RYCLDTW------GVWPRPD 367
Query: 137 -STNIYYGGTKIAGSKIVFTNGSQDPWRHAS-KQTSSPDMPSYLITCHNCGHGTDLRGC- 193
++GG A S I+F+NG+ DPW ++ S + + +T H DLR
Sbjct: 368 WLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIA--VTIQGGAHHLDLRASH 425
Query: 194 PQSP 197
P+ P
Sbjct: 426 PEDP 429
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 89 WWFQVCTEVAF-FQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKI 147
W +Q CTEV F +D + + D C +G + P YGG I
Sbjct: 314 WSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWG--VRPRPSWITTMYGGKNI 371
Query: 148 AG-SKIVFTNGSQDPWRHASKQTSSPDMPSYL--ITCHNCGHGTDLR 191
+ + IVF+NG DPW S + D+ L +T H DLR
Sbjct: 372 SSHTNIVFSNGELDPW---SGGGVTKDITDTLVAVTISEGAHHLDLR 415
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 16 FLADAAVTAFQYGNPDKLCTPLVEAKN 42
FL+ A T ++Y PDK CT N
Sbjct: 1391 FLSPATFTVYEYHRPDKQCTMFYSTSN 1417
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 16 FLADAAVTAFQYGNPDKLCTPLVEAKN 42
FL+ A T ++Y PDK CT N
Sbjct: 1487 FLSPATFTVYEYHRPDKQCTMFYSTSN 1513
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 16 FLADAAVTAFQYGNPDKLCTPLVEAKN 42
FL+ A T ++Y PDK CT N
Sbjct: 1487 FLSPATFTVYEYHRPDKQCTMFYSTSN 1513
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,682,674
Number of Sequences: 62578
Number of extensions: 320829
Number of successful extensions: 638
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 10
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)