Your job contains 1 sequence.
>026362
MVASAISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLK
IDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQ
RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI
ILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026362
(240 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|DET_0710 - symbol:DET_0710 "ATP-dependent Clp pr... 310 1.0e-27 1
TIGR_CMR|ECH_0901 - symbol:ECH_0901 "ATP-dependent Clp pr... 299 1.5e-26 1
TIGR_CMR|BA_5380 - symbol:BA_5380 "ATP-dependent Clp prot... 295 4.0e-26 1
TIGR_CMR|CHY_0325 - symbol:CHY_0325 "ATP-dependent Clp pr... 292 8.4e-26 1
TIGR_CMR|NSE_0752 - symbol:NSE_0752 "ATP-dependent Clp pr... 292 8.4e-26 1
TAIR|locus:2033344 - symbol:CLPP3 "CLP protease proteolyt... 292 8.4e-26 1
TIGR_CMR|CPS_3785 - symbol:CPS_3785 "ATP-dependent Clp pr... 290 1.4e-25 1
TIGR_CMR|SO_1794 - symbol:SO_1794 "ATP-dependent Clp prot... 290 1.4e-25 1
TAIR|locus:2163538 - symbol:CLPP4 "CLP protease P4" speci... 290 1.4e-25 1
TIGR_CMR|APH_0970 - symbol:APH_0970 "ATP-dependent Clp pr... 286 3.6e-25 1
TIGR_CMR|GSU_1792 - symbol:GSU_1792 "ATP-dependent Clp pr... 286 3.6e-25 1
TAIR|locus:2196120 - symbol:CLPP5 "nuclear encoded CLP pr... 284 5.9e-25 1
UNIPROTKB|P63786 - symbol:clpP "ATP-dependent Clp proteas... 283 7.6e-25 1
TIGR_CMR|VC_1922 - symbol:VC_1922 "ATP-dependent Clp prot... 281 1.2e-24 1
TIGR_CMR|SPO_1003 - symbol:SPO_1003 "ATP-dependent Clp pr... 278 2.6e-24 1
UNIPROTKB|P63783 - symbol:clpP2 "ATP-dependent Clp protea... 277 3.3e-24 1
ZFIN|ZDB-GENE-030131-7860 - symbol:clpp "ClpP caseinolyti... 271 1.4e-23 1
UNIPROTKB|P0A6G7 - symbol:clpP species:83333 "Escherichia... 269 2.3e-23 1
TIGR_CMR|BA_2788 - symbol:BA_2788 "ATP-dependent Clp prot... 269 2.3e-23 1
GENEDB_PFALCIPARUM|PFC0310c - symbol:PFC0310c "ATP-depend... 268 2.9e-23 1
UNIPROTKB|O97252 - symbol:PFC0310c "ATP-dependent CLP pro... 268 2.9e-23 1
TIGR_CMR|CJE_0185 - symbol:CJE_0185 "ATP-dependent Clp pr... 266 4.8e-23 1
UNIPROTKB|Q2KHU4 - symbol:CLPP "Putative ATP-dependent Cl... 265 6.1e-23 1
UNIPROTKB|F1SBT2 - symbol:CLPP "ATP-dependent Clp proteas... 265 6.1e-23 1
TAIR|locus:2034625 - symbol:CLP2 "CLP protease proteolyti... 265 6.1e-23 1
RGD|1588583 - symbol:Clpp "ClpP caseinolytic peptidase, A... 261 1.6e-22 1
MGI|MGI:1858213 - symbol:Clpp "ClpP caseinolytic peptidas... 260 2.1e-22 1
UNIPROTKB|Q16740 - symbol:CLPP "Putative ATP-dependent Cl... 259 2.6e-22 1
UNIPROTKB|E2QUV8 - symbol:CLPP "ATP-dependent Clp proteas... 258 3.4e-22 1
TAIR|locus:2178282 - symbol:NCLPP7 "nuclear-encoded CLP p... 258 3.4e-22 1
UNIPROTKB|P0A526 - symbol:clpP1 "ATP-dependent Clp protea... 255 7.0e-22 1
FB|FBgn0032229 - symbol:CG5045 species:7227 "Drosophila m... 253 1.1e-21 1
TIGR_CMR|CBU_0738 - symbol:CBU_0738 "ATP-dependent Clp pr... 252 1.5e-21 1
UNIPROTKB|G4MLM6 - symbol:MGG_06757 "ATP-dependent Clp pr... 245 8.0e-21 1
WB|WBGene00014172 - symbol:clpp-1 species:6239 "Caenorhab... 245 8.0e-21 1
UNIPROTKB|P0C312 - symbol:clpP "ATP-dependent Clp proteas... 242 1.7e-20 1
UNIPROTKB|P0C313 - symbol:clpP "ATP-dependent Clp proteas... 242 1.7e-20 1
UNIPROTKB|P0C314 - symbol:clpP "ATP-dependent Clp proteas... 242 1.7e-20 1
UNIPROTKB|Q6ENE9 - symbol:clpP "ATP-dependent Clp proteas... 242 1.7e-20 1
UNIPROTKB|Q6E6T0 - symbol:Q6E6T0 "ATP-dependent Clp prote... 237 5.7e-20 1
TAIR|locus:2130449 - symbol:CLPR4 "CLP protease R subunit... 212 2.5e-17 1
GENEDB_PFALCIPARUM|PF14_0348 - symbol:PF14_0348 "ATP-depe... 150 6.8e-10 1
UNIPROTKB|Q8IL98 - symbol:PF14_0348 "ATP-dependent Clp pr... 150 6.8e-10 1
TAIR|locus:2031070 - symbol:CLPR1 "CLP protease proteolyt... 145 2.4e-08 1
TIGR_CMR|SO_2964 - symbol:SO_2964 "ClpP protease family p... 127 3.2e-06 1
>TIGR_CMR|DET_0710 [details] [associations]
symbol:DET_0710 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000027
GenomeReviews:CP000027_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
ProtClustDB:PRK00277 OMA:ERDYWMD RefSeq:YP_181451.1
ProteinModelPortal:Q3Z8J8 SMR:Q3Z8J8 STRING:Q3Z8J8 GeneID:3229949
KEGG:det:DET0710 PATRIC:21608483 BioCyc:DETH243164:GJNF-711-MONOMER
Uniprot:Q3Z8J8
Length = 200
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 65/162 (40%), Positives = 96/162 (59%)
Query: 75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
+IS +N P ++ + D+ S+L + RIIF+G IN VA I+QL+ L D
Sbjct: 1 MISPENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDP 60
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
D DI +Y++ PGG I + LA+YD M I+PKV T+C GVAAS A ++L G KG RYA+P
Sbjct: 61 DKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALP 120
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
NA I ++Q G+ G D++ E + + + + L+ HT
Sbjct: 121 NATIHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHT 162
>TIGR_CMR|ECH_0901 [details] [associations]
symbol:ECH_0901 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381 TIGRFAMs:TIGR00493
ProtClustDB:PRK00277 RefSeq:YP_507695.1 ProteinModelPortal:Q2GFT8
SMR:Q2GFT8 STRING:Q2GFT8 GeneID:3928015 KEGG:ech:ECH_0901
PATRIC:20577202 OMA:RDPVEIF BioCyc:ECHA205920:GJNR-904-MONOMER
Uniprot:Q2GFT8
Length = 199
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 57/124 (45%), Positives = 82/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFI PI +A ++QL+ L + + + +I MY+N PGG + + L+IY
Sbjct: 19 DIYSRLLKERIIFITGPIEDQMASLIVAQLIFLESENPEKEICMYINSPGGVVTAGLSIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G AAS +++LA GE GMRYA+PN+RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRIMIHQPSGGFQGQATDIEI 138
Query: 217 QVNE 220
E
Sbjct: 139 HAKE 142
>TIGR_CMR|BA_5380 [details] [associations]
symbol:BA_5380 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:198094 "Bacillus anthracis str. Ames"
[GO:0006508 "proteolysis" evidence=ISS] [GO:0009368 "endopeptidase
Clp complex" evidence=ISS] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0005524 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381 TIGRFAMs:TIGR00493
OMA:LVHPPQA ProtClustDB:PRK00277 RefSeq:NP_847553.1
RefSeq:YP_022039.1 RefSeq:YP_031239.1 ProteinModelPortal:Q81X63
SMR:Q81X63 IntAct:Q81X63 DNASU:1084924
EnsemblBacteria:EBBACT00000008224 EnsemblBacteria:EBBACT00000015397
EnsemblBacteria:EBBACT00000024106 GeneID:1084924 GeneID:2818633
GeneID:2848145 KEGG:ban:BA_5380 KEGG:bar:GBAA_5380 KEGG:bat:BAS5000
BioCyc:BANT260799:GJAJ-5075-MONOMER
BioCyc:BANT261594:GJ7F-5251-MONOMER Uniprot:Q81X63
Length = 193
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 56/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEAMIHQPLGGAQGQATEIE 137
>TIGR_CMR|CHY_0325 [details] [associations]
symbol:CHY_0325 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381 TIGRFAMs:TIGR00493
OMA:LVHPPQA ProtClustDB:PRK00277 RefSeq:YP_359188.1
ProteinModelPortal:Q3AF96 SMR:Q3AF96 STRING:Q3AF96 GeneID:3726391
KEGG:chy:CHY_0325 PATRIC:21273821
BioCyc:CHYD246194:GJCN-326-MONOMER Uniprot:Q3AF96
Length = 195
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 61/140 (43%), Positives = 84/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++R IFIG PI+ VA I+Q++ L D + DI +Y+N PGG I + +AIY
Sbjct: 20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A +LA G KG R+++P ARIM++QP G G D+
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R + L HT
Sbjct: 140 HAREILRMRDMLNELLTKHT 159
>TIGR_CMR|NSE_0752 [details] [associations]
symbol:NSE_0752 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000237
GenomeReviews:CP000237_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
RefSeq:YP_506627.1 ProteinModelPortal:Q2GD19 SMR:Q2GD19
STRING:Q2GD19 GeneID:3931620 KEGG:nse:NSE_0752 PATRIC:22681509
ProtClustDB:CLSK2527690 BioCyc:NSEN222891:GHFU-763-MONOMER
Uniprot:Q2GD19
Length = 201
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 66/167 (39%), Positives = 101/167 (60%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L + R++F+ PI +A ++QL+ L + D DI M
Sbjct: 3 LVPMVVDQTPRGERAYDIFSRLLKERVVFLTGPIEDGMASLIVAQLLFLEAENPDKDIFM 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + L+IYD M +IKP V TVC G AAS A++ILA G +G R+A+P++R+M+
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYIKPSVSTVCVGQAASAASLILASGAEGKRFALPHSRVMV 122
Query: 201 NQPQSGSGG-------HVEDV---KRQVNEAVISRHVSLSFLLLHTL 237
+QP G G HV+++ KR +NE + +H + + TL
Sbjct: 123 HQPSGGVRGQATDMEIHVKEILQLKRMINE-IYQKHTGETIKKIETL 168
>TAIR|locus:2033344 [details] [associations]
symbol:CLPP3 "CLP protease proteolytic subunit 3"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009840 "chloroplastic
endopeptidase Clp complex" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009532 "plastid stroma" evidence=IDA]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0006508 GO:GO:0009941
GO:GO:0004252 GO:GO:0009534 EMBL:AC013288 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
GO:GO:0009840 EMBL:AF032123 EMBL:AB022328 EMBL:AC079285
EMBL:AF370528 EMBL:AY072526 EMBL:AY087349 IPI:IPI00538968
PIR:T52041 PIR:T52453 RefSeq:NP_564880.1 UniGene:At.21167 PDB:1R90
PDBsum:1R90 ProteinModelPortal:Q9SXJ6 SMR:Q9SXJ6 IntAct:Q9SXJ6
STRING:Q9SXJ6 MEROPS:S14.A03 PaxDb:Q9SXJ6 PRIDE:Q9SXJ6
ProMEX:Q9SXJ6 EnsemblPlants:AT1G66670.1 GeneID:842985
KEGG:ath:AT1G66670 GeneFarm:804 TAIR:At1g66670 InParanoid:Q9SXJ6
OMA:NMLLRQR PhylomeDB:Q9SXJ6 ProtClustDB:CLSN2689048
Genevestigator:Q9SXJ6 Uniprot:Q9SXJ6
Length = 309
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 57/149 (38%), Positives = 89/149 (59%)
Query: 72 SYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLAT 131
++ + S D+ P+ + LD +++L R RI+F+G ++ M A ISQL+ L
Sbjct: 60 NWDVSSFSIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDA 119
Query: 132 IDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRY 191
D + DI +++N PGGSI + + IYD M K V TVC G+AAS A +LA G KG RY
Sbjct: 120 EDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRY 179
Query: 192 AMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
MPN+++M++QP +GG ++ ++ E
Sbjct: 180 CMPNSKVMIHQPLGTAGGKATEMSIRIRE 208
>TIGR_CMR|CPS_3785 [details] [associations]
symbol:CPS_3785 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:167879 "Colwellia psychrerythraea 34H"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000083
GenomeReviews:CP000083_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 OMA:LVHPPQA RefSeq:YP_270452.1
ProteinModelPortal:Q47XL8 SMR:Q47XL8 STRING:Q47XL8 GeneID:3522356
KEGG:cps:CPS_3785 PATRIC:21470483
BioCyc:CPSY167879:GI48-3807-MONOMER Uniprot:Q47XL8
Length = 220
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 57/140 (40%), Positives = 83/140 (59%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ + +A I+QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 43 DIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESESPDKDIYLYINSPGGSVTAGMAIY 102
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP + TVC G AAS A +L+GGEKG RY +PNAR+M++QP G G D +
Sbjct: 103 DTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCLPNARVMIHQPLGGFQGQASDFEI 162
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + + + HT
Sbjct: 163 HAKEILFIKDKLNKLMAEHT 182
>TIGR_CMR|SO_1794 [details] [associations]
symbol:SO_1794 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:211586 "Shewanella oneidensis MR-1"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:AE014299
GenomeReviews:AE014299_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 OMA:LVHPPQA ProtClustDB:PRK00277
RefSeq:NP_717403.1 ProteinModelPortal:Q8EG19 SMR:Q8EG19
GeneID:1169567 KEGG:son:SO_1794 PATRIC:23523211 Uniprot:Q8EG19
Length = 202
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 63/156 (40%), Positives = 91/156 (58%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ T G D+ S L + RIIF+ + +A ++QL+ L + D DI +
Sbjct: 11 LVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFL 70
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M+
Sbjct: 71 YINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMI 130
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ E + ++ L HT
Sbjct: 131 HQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHT 166
>TAIR|locus:2163538 [details] [associations]
symbol:CLPP4 "CLP protease P4" species:3702 "Arabidopsis
thaliana" [GO:0004252 "serine-type endopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0009840 "chloroplastic endopeptidase Clp complex"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009532 "plastid stroma" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009658 "chloroplast organization" evidence=IMP]
[GO:0048510 "regulation of timing of transition from vegetative to
reproductive phase" evidence=IMP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010207
"photosystem II assembly" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
[GO:0042793 "transcription from plastid promoter" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006508 GO:GO:0009941
GO:GO:0004252 GO:GO:0009658 GO:GO:0048510 GO:GO:0009535
eggNOG:COG0740 HOGENOM:HOG000285833 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 EMBL:AB022329 EMBL:AJ000930
EMBL:AB018113 EMBL:AY042832 EMBL:BT006321 EMBL:AY087717
IPI:IPI00548920 PIR:T52452 RefSeq:NP_568644.1 UniGene:At.387
UniGene:At.67124 PDB:1R91 PDBsum:1R91 ProteinModelPortal:Q94B60
SMR:Q94B60 IntAct:Q94B60 STRING:Q94B60 MEROPS:S14.010 PaxDb:Q94B60
PRIDE:Q94B60 EnsemblPlants:AT5G45390.1 GeneID:834575
KEGG:ath:AT5G45390 GeneFarm:801 TAIR:At5g45390 InParanoid:Q94B60
OMA:ERDYWMD PhylomeDB:Q94B60 ProtClustDB:CLSN2689933
Genevestigator:Q94B60 Uniprot:Q94B60
Length = 292
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 56/134 (41%), Positives = 84/134 (62%)
Query: 93 GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV 152
G D+ +L R RI+F+G I+ VA +SQL+ L D DI +++N PGGS+ +
Sbjct: 75 GAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSAT 134
Query: 153 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVE 212
+AIYD + ++ V T+ G+AAS A+IIL G KG R+AMPN RIM++QP G+ G
Sbjct: 135 MAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAI 194
Query: 213 DVKRQVNEAVISRH 226
DV+ Q E + +++
Sbjct: 195 DVEIQAKEVMHNKN 208
>TIGR_CMR|APH_0970 [details] [associations]
symbol:APH_0970 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000235
GenomeReviews:CP000235_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 ProtClustDB:PRK00277 RefSeq:YP_505537.1
ProteinModelPortal:Q2GJB4 SMR:Q2GJB4 STRING:Q2GJB4 GeneID:3930516
KEGG:aph:APH_0970 PATRIC:20950656 OMA:ARMNELM
BioCyc:APHA212042:GHPM-982-MONOMER Uniprot:Q2GJB4
Length = 197
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 63/157 (40%), Positives = 92/157 (58%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RIIF+ PI +A ++QLV L D + DI M
Sbjct: 3 LVPMVVEQTGRGERAYDIYSRLLKERIIFVTGPIEDEMASLIVAQLVFLEAEDPEKDISM 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + L+IYD M +IKP V T+C G AAS +++L G GMR A+PN+R+M+
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYIKPNVATLCLGQAASMGSLLLCAGAPGMRCALPNSRVMI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAV-ISRHVSLSFLLLHT 236
+QP G G D++ E + I R ++ F+ HT
Sbjct: 123 HQPSGGFRGQATDIEIHAREILEIKRRLNEIFVR-HT 158
>TIGR_CMR|GSU_1792 [details] [associations]
symbol:GSU_1792 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:243231 "Geobacter sulfurreducens PCA"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:AE017180
GenomeReviews:AE017180_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 OMA:LVHPPQA ProtClustDB:PRK00277
RefSeq:NP_952842.1 ProteinModelPortal:Q74C82 SMR:Q74C82
GeneID:2686403 KEGG:gsu:GSU1792 PATRIC:22026431
BioCyc:GSUL243231:GH27-1812-MONOMER Uniprot:Q74C82
Length = 199
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 59/140 (42%), Positives = 87/140 (62%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G P++ VA I+Q++ L D D DI +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S +AIYD M +IK V T+C G AAS A++L+GGEKG R+++ ++RIM+
Sbjct: 62 YINSPGGVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMI 121
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ E
Sbjct: 122 HQPLGGFQGQATDIHIHAQE 141
>TAIR|locus:2196120 [details] [associations]
symbol:CLPP5 "nuclear encoded CLP protease 5"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009840 "chloroplastic
endopeptidase Clp complex" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009532 "plastid stroma" evidence=IDA]
[GO:0009579 "thylakoid" evidence=IDA] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0006508
GO:GO:0009941 GO:GO:0004252 EMBL:AC022521 GO:GO:0009534
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 EMBL:AB022326 EMBL:AJ012278
EMBL:BT024859 EMBL:AY084394 IPI:IPI00546407 PIR:T52455
RefSeq:NP_563657.1 UniGene:At.21093 PDB:1R92 PDBsum:1R92
ProteinModelPortal:Q9S834 SMR:Q9S834 IntAct:Q9S834 STRING:Q9S834
MEROPS:S14.A01 PaxDb:Q9S834 PRIDE:Q9S834 ProMEX:Q9S834
EnsemblPlants:AT1G02560.1 GeneID:839433 KEGG:ath:AT1G02560
GeneFarm:806 TAIR:At1g02560 InParanoid:Q9S834 OMA:QGLGMVP
PhylomeDB:Q9S834 ProtClustDB:CLSN2687625 Genevestigator:Q9S834
Uniprot:Q9S834
Length = 298
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 59/138 (42%), Positives = 89/138 (64%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF+ RII G ++ +A ++QL+ L +D DI+MY+N PGGS+ + +AI+D M
Sbjct: 117 SQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTM 176
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D+ Q N
Sbjct: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQAN 236
Query: 220 EAVISRHVSLS-FLLLHT 236
E ++ +L+ +L HT
Sbjct: 237 E-MLHHKANLNGYLAYHT 253
>UNIPROTKB|P63786 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:196620 "Staphylococcus aureus subsp. aureus MW2"
[GO:0042802 "identical protein binding" evidence=IPI]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 MEROPS:S14.001
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 TIGRFAMs:TIGR00493 OMA:LVHPPQA
ProtClustDB:PRK00277 EMBL:BA000033 RefSeq:NP_645547.1 PDB:3ST9
PDB:3STA PDBsum:3ST9 PDBsum:3STA ProteinModelPortal:P63786
SMR:P63786 STRING:P63786 EnsemblBacteria:EBSTAT00000026409
GeneID:1002841 GenomeReviews:BA000033_GR KEGG:sam:MW0730
PATRIC:19568014 BioCyc:SAUR196620:GJ9Z-751-MONOMER BindingDB:P63786
EvolutionaryTrace:P63786 Uniprot:P63786
Length = 195
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 54/129 (41%), Positives = 82/129 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D + IKP V T+C G+AAS + +LA G KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 217 QVNEAVISR 225
N + +R
Sbjct: 139 AANHILKTR 147
>TIGR_CMR|VC_1922 [details] [associations]
symbol:VC_1922 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 TIGRFAMs:TIGR00493 OMA:LVHPPQA
ProtClustDB:PRK00277 PIR:G82139 RefSeq:NP_231556.1
ProteinModelPortal:Q9KQS6 SMR:Q9KQS6 DNASU:2613551 GeneID:2613551
KEGG:vch:VC1922 PATRIC:20082888 Uniprot:Q9KQS6
Length = 200
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 54/140 (38%), Positives = 83/140 (59%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 24 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V TVC G A S A +LAGG G RY +PN+R+M++QP G G D++
Sbjct: 84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + ++ L HT
Sbjct: 144 HAQEILTIKNKLNRLLAEHT 163
>TIGR_CMR|SPO_1003 [details] [associations]
symbol:SPO_1003 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009368
"endopeptidase Clp complex" evidence=ISS] HAMAP:MF_00444
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006508
GO:GO:0004252 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381 OMA:LVHPPQA
ProtClustDB:PRK00277 RefSeq:YP_166255.1 ProteinModelPortal:Q5LUQ0
SMR:Q5LUQ0 GeneID:3193881 KEGG:sil:SPO1003 PATRIC:23375299
Uniprot:Q5LUQ0
Length = 209
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFI PI+ ++ ++QL+ L + + +I +Y+N PGG + S L+IY
Sbjct: 28 DIFSRLLKERIIFINGPIHDGMSHLIVAQLLHLEAENPNKEISIYINSPGGVVTSGLSIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKPK T+ G AAS +++LAGGEKGMR+++PN+RIM++QP G G D+
Sbjct: 88 DTMQYIKPKCSTLVIGQAASMGSVLLAGGEKGMRFSLPNSRIMVHQPSGGYQGQASDI 145
>UNIPROTKB|P63783 [details] [associations]
symbol:clpP2 "ATP-dependent Clp protease proteolytic
subunit 2" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006508 GO:GO:0004252 EMBL:BX842579 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
BRENDA:3.4.21.92 PIR:C70865 RefSeq:NP_216976.1 RefSeq:NP_337021.1
RefSeq:YP_006515897.1 ProteinModelPortal:P63783 SMR:P63783
IntAct:P63783 MEROPS:S14.009 PRIDE:P63783
EnsemblBacteria:EBMYCT00000002187 EnsemblBacteria:EBMYCT00000071970
GeneID:13319170 GeneID:888174 GeneID:925797 KEGG:mtc:MT2535
KEGG:mtu:Rv2460c KEGG:mtv:RVBD_2460c PATRIC:18127328
TubercuList:Rv2460c OMA:IQGQVSD ProtClustDB:PRK12553 Uniprot:P63783
Length = 214
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 59/141 (41%), Positives = 86/141 (60%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
LF RIIF+G ++ A ++QL+ L ++D D DI MY+N PGG S++AIYD M +
Sbjct: 36 LFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITMYINSPGGGFTSLMAIYDTMQY 95
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ-SGS-GGHVEDVKRQVN 219
++ + TVC G AAS AA++LA G G R A+PNAR++++QP SG G D++ Q
Sbjct: 96 VRADIQTVCLGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSLSGVIQGQFSDLEIQAA 155
Query: 220 EAVISRHVSLSFLLLHTLNDS 240
E R + + L HT D+
Sbjct: 156 EIERMRTLMETTLARHTGKDA 176
>ZFIN|ZDB-GENE-030131-7860 [details] [associations]
symbol:clpp "ClpP caseinolytic peptidase,
ATP-dependent, proteolytic subunit homolog (E. coli)" species:7955
"Danio rerio" [GO:0004252 "serine-type endopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008236 "serine-type peptidase activity"
evidence=IEA] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
ZFIN:ZDB-GENE-030131-7860 GO:GO:0006508 GO:GO:0004252 EMBL:BX649502
InterPro:IPR023562 PANTHER:PTHR10381 GeneTree:ENSGT00390000005830
OMA:LVHPPQA MEROPS:S14.003 HOVERGEN:HBG001689 IPI:IPI00481150
UniGene:Dr.76726 SMR:Q5PNM4 Ensembl:ENSDART00000006604
Ensembl:ENSDART00000131951 InParanoid:Q5PNM4 Uniprot:Q5PNM4
Length = 266
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 61/150 (40%), Positives = 88/150 (58%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ G D+ S L R RII + PI+ VA I+QL+ L + + I
Sbjct: 28 PLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVASLVIAQLLFLQSESNNKPIH 87
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
MY+N PGG + S LAIYD M +I + T C G AAS +++LA G GMR+++PNARIM
Sbjct: 88 MYINSPGGVVTSGLAIYDTMQYILNPISTWCVGQAASMGSLLLAAGTAGMRHSLPNARIM 147
Query: 200 LNQPQSGSGGHVEDVKRQVNEAV-ISRHVS 228
++QP G+ G D+ Q E + + R ++
Sbjct: 148 VHQPSGGARGQATDIAIQAEEILKLKRQIN 177
>UNIPROTKB|P0A6G7 [details] [associations]
symbol:clpP species:83333 "Escherichia coli K-12"
[GO:0009408 "response to heat" evidence=IEP] [GO:0004252
"serine-type endopeptidase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=IDA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008236 "serine-type peptidase activity"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009266
"response to temperature stimulus" evidence=EXP] HAMAP:MF_00444
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005829
GO:GO:0005524 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0004252
GO:GO:0008236 GO:GO:0009408 EMBL:U82664 GO:GO:0006515
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 TIGRFAMs:TIGR00493 OMA:LVHPPQA
ProtClustDB:PRK00277 EMBL:J05534 PIR:B36575 RefSeq:NP_414971.1
RefSeq:YP_488729.1 PDB:1TYF PDB:1YG6 PDB:1YG8 PDB:2FZS PDB:3HLN
PDB:3MT6 PDBsum:1TYF PDBsum:1YG6 PDBsum:1YG8 PDBsum:2FZS
PDBsum:3HLN PDBsum:3MT6 ProteinModelPortal:P0A6G7 SMR:P0A6G7
DIP:DIP-31838N IntAct:P0A6G7 SWISS-2DPAGE:P0A6G7 PaxDb:P0A6G7
PRIDE:P0A6G7 EnsemblBacteria:EBESCT00000004586
EnsemblBacteria:EBESCT00000016552 EnsemblBacteria:EBESCT00000232597
GeneID:12931742 GeneID:945082 KEGG:ecj:Y75_p0425 KEGG:eco:b0437
PATRIC:32116027 EchoBASE:EB0156 EcoGene:EG10158
BioCyc:EcoCyc:EG10158-MONOMER BioCyc:ECOL316407:JW0427-MONOMER
BioCyc:MetaCyc:EG10158-MONOMER EvolutionaryTrace:P0A6G7
Genevestigator:P0A6G7 Uniprot:P0A6G7
Length = 207
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 60/168 (35%), Positives = 94/168 (55%)
Query: 77 SGKNDN-PP---LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVT 128
SG+ DN P L+P V+ T G D+ S L + R+IF+ + +A ++Q++
Sbjct: 4 SGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLF 63
Query: 129 LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKG 188
L + + DI +Y+N PGG I + ++IYD M +IKP V T+C G AAS A +L G KG
Sbjct: 64 LEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKG 123
Query: 189 MRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
R+ +PN+R+M++QP G G D++ E + + + LHT
Sbjct: 124 KRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHT 171
>TIGR_CMR|BA_2788 [details] [associations]
symbol:BA_2788 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:198094 "Bacillus anthracis str. Ames"
[GO:0006508 "proteolysis" evidence=ISS] [GO:0009368 "endopeptidase
Clp complex" evidence=ISS] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0005524 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006508
GO:GO:0004252 RefSeq:NP_845137.1 RefSeq:YP_019430.1
RefSeq:YP_028858.1 ProteinModelPortal:Q81PL4 SMR:Q81PL4
MEROPS:S14.001 DNASU:1086459 EnsemblBacteria:EBBACT00000008369
EnsemblBacteria:EBBACT00000015150 EnsemblBacteria:EBBACT00000020004
GeneID:1086459 GeneID:2817074 GeneID:2849926 KEGG:ban:BA_2788
KEGG:bar:GBAA_2788 KEGG:bat:BAS2599 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 OMA:DIVTICI ProtClustDB:CLSK916804
BioCyc:BANT260799:GJAJ-2663-MONOMER
BioCyc:BANT261594:GJ7F-2758-MONOMER InterPro:IPR023562
PANTHER:PTHR10381 TIGRFAMs:TIGR00493 Uniprot:Q81PL4
Length = 193
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 53/130 (40%), Positives = 79/130 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ IG IN VA ++QL+ L D + DI +Y+N PGGS + AI
Sbjct: 19 DIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAIL 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M+ IKP V T+C G AAS A++L G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEI 138
Query: 217 QVNEAVISRH 226
+ +H
Sbjct: 139 TAKRILKLKH 148
>GENEDB_PFALCIPARUM|PFC0310c [details] [associations]
symbol:PFC0310c "ATP-dependent CLP protease,
putative" species:5833 "Plasmodium falciparum" [GO:0030163 "protein
catabolic process" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00382 Pfam:PF00574 GO:GO:0006508
GO:GO:0004252 GO:GO:0030163 EMBL:AL844502 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 GO:GO:0020011
RefSeq:XP_001351149.1 PDB:2F6I PDBsum:2F6I
ProteinModelPortal:O97252 SMR:O97252 MEROPS:S14.011
EnsemblProtists:PFC0310c:mRNA GeneID:814391 KEGG:pfa:PFC0310c
EuPathDB:PlasmoDB:PF3D7_0307400 ProtClustDB:CLSZ2500462
EvolutionaryTrace:O97252 Uniprot:O97252
Length = 370
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 55/136 (40%), Positives = 84/136 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ F+ RII++ IN A ISQL+ L I+ + DI +Y+N PGGSI LAI
Sbjct: 186 DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAIL 244
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D ++IK + T+ FG+ AS A++ILA G+KG R ++PN RIM++QP + GH +D++
Sbjct: 245 DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEI 304
Query: 217 QVNEAVISRHVSLSFL 232
Q E + + + +L
Sbjct: 305 QTKEILYLKKLLYHYL 320
>UNIPROTKB|O97252 [details] [associations]
symbol:PFC0310c "ATP-dependent CLP protease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00382 Pfam:PF00574 GO:GO:0006508 GO:GO:0004252
GO:GO:0030163 EMBL:AL844502 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0020011 RefSeq:XP_001351149.1 PDB:2F6I
PDBsum:2F6I ProteinModelPortal:O97252 SMR:O97252 MEROPS:S14.011
EnsemblProtists:PFC0310c:mRNA GeneID:814391 KEGG:pfa:PFC0310c
EuPathDB:PlasmoDB:PF3D7_0307400 ProtClustDB:CLSZ2500462
EvolutionaryTrace:O97252 Uniprot:O97252
Length = 370
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 55/136 (40%), Positives = 84/136 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ F+ RII++ IN A ISQL+ L I+ + DI +Y+N PGGSI LAI
Sbjct: 186 DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAIL 244
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D ++IK + T+ FG+ AS A++ILA G+KG R ++PN RIM++QP + GH +D++
Sbjct: 245 DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEI 304
Query: 217 QVNEAVISRHVSLSFL 232
Q E + + + +L
Sbjct: 305 QTKEILYLKKLLYHYL 320
>TIGR_CMR|CJE_0185 [details] [associations]
symbol:CJE_0185 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:195099 "Campylobacter jejuni RM1221"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:CP000025
GenomeReviews:CP000025_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 ProtClustDB:PRK00277 OMA:ERDYWMD
RefSeq:YP_178209.1 ProteinModelPortal:Q5HWX6 SMR:Q5HWX6
STRING:Q5HWX6 GeneID:3230948 KEGG:cjr:CJE0185 PATRIC:20042079
BioCyc:CJEJ195099:GJC0-190-MONOMER Uniprot:Q5HWX6
Length = 194
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 53/124 (42%), Positives = 79/124 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + I+ +A ++QL+ L D DI +Y+N PGG I S +IY
Sbjct: 18 DIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V T+C G AAS A +L+ G +G R+A+PN+RIM++QP G+ G D++
Sbjct: 78 DTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEI 137
Query: 217 QVNE 220
Q E
Sbjct: 138 QAKE 141
>UNIPROTKB|Q2KHU4 [details] [associations]
symbol:CLPP "Putative ATP-dependent Clp protease
proteolytic subunit, mitochondrial" species:9913 "Bos taurus"
[GO:0005759 "mitochondrial matrix" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005759 GO:GO:0006508 GO:GO:0004252 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
GeneTree:ENSGT00390000005830 OMA:LVHPPQA EMBL:BC112880
IPI:IPI00700802 RefSeq:NP_001039879.1 UniGene:Bt.54443 HSSP:P0A6G7
ProteinModelPortal:Q2KHU4 SMR:Q2KHU4 STRING:Q2KHU4 MEROPS:S14.003
PRIDE:Q2KHU4 Ensembl:ENSBTAT00000019577 GeneID:535981
KEGG:bta:535981 CTD:8192 HOVERGEN:HBG001689 InParanoid:Q2KHU4
OrthoDB:EOG46T32D NextBio:20876866 Uniprot:Q2KHU4
Length = 272
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 61/157 (38%), Positives = 87/157 (55%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ G D+ S L R RI+ + PI+ VA I+QL+ L + I
Sbjct: 53 PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 112
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
MY+N PGG + S LAIYD M +I + T C G AAS +++LA G GMR+++PN+RIM
Sbjct: 113 MYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIM 172
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D+ Q E + + S HT
Sbjct: 173 IHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHT 209
>UNIPROTKB|F1SBT2 [details] [associations]
symbol:CLPP "ATP-dependent Clp protease proteolytic
subunit" species:9823 "Sus scrofa" [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004252
"serine-type endopeptidase activity" evidence=IEA] HAMAP:MF_00444
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005739
GO:GO:0006508 GO:GO:0004252 InterPro:IPR023562 PANTHER:PTHR10381
GeneTree:ENSGT00390000005830 OMA:LVHPPQA EMBL:CU929921
EMBL:AEMK01192585 EMBL:FP312741 Ensembl:ENSSSCT00000014789
Uniprot:F1SBT2
Length = 273
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 61/157 (38%), Positives = 87/157 (55%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ G D+ S L R RI+ + PI+ VA I+QL+ L + I
Sbjct: 53 PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 112
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
MY+N PGG + S LAIYD M +I + T C G AAS +++LA G GMR+++PN+RIM
Sbjct: 113 MYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIM 172
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D+ Q E + + S HT
Sbjct: 173 IHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHT 209
>TAIR|locus:2034625 [details] [associations]
symbol:CLP2 "CLP protease proteolytic subunit 2"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009840 "chloroplastic
endopeptidase Clp complex" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA]
[GO:0009658 "chloroplast organization" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
[GO:0042793 "transcription from plastid promoter" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001907 PRINTS:PR00127 Pfam:PF00574
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006508 GO:GO:0009941
GO:GO:0004252 GO:GO:0009658 GO:GO:0009534 GO:GO:0010287
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 EMBL:AB022327 EMBL:AC025416
EMBL:AY057617 EMBL:AY062770 EMBL:AY081641 IPI:IPI00516669
PIR:T52454 RefSeq:NP_563907.1 UniGene:At.20902 PDB:1R97 PDBsum:1R97
ProteinModelPortal:Q9XJ36 SMR:Q9XJ36 IntAct:Q9XJ36 STRING:Q9XJ36
PaxDb:Q9XJ36 PRIDE:Q9XJ36 ProMEX:Q9XJ36 EnsemblPlants:AT1G12410.1
GeneID:837797 KEGG:ath:AT1G12410 GeneFarm:808 TAIR:At1g12410
InParanoid:Q9XJ36 OMA:IWNALYR PhylomeDB:Q9XJ36
ProtClustDB:CLSN2687781 Genevestigator:Q9XJ36 Uniprot:Q9XJ36
Length = 279
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 52/125 (41%), Positives = 78/125 (62%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ + L+R R+IFIGQ I+ + + ++ ++ L T+D+ I MYLN PGG + LAI
Sbjct: 88 VDIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAI 147
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +K VGT C G+A + A +LA GEKG R+AMP +RI L P + G +D++
Sbjct: 148 YDTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQ 207
Query: 216 RQVNE 220
+ E
Sbjct: 208 NEAKE 212
>RGD|1588583 [details] [associations]
symbol:Clpp "ClpP caseinolytic peptidase, ATP-dependent,
proteolytic subunit homolog (E. coli)" species:10116 "Rattus
norvegicus" [GO:0005515 "protein binding" evidence=IPI] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0042802 "identical protein
binding" evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] NCBI:XP_001055676 REFSEQ:XM_001055676
Length = 272
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 59/157 (37%), Positives = 87/157 (55%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ G D+ S L R RI+ + PI+ VA I+QL+ L + I
Sbjct: 53 PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 112
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
MY+N PGG + + LAIYD M +I + T C G AAS +++LA G GMR+++PN+RIM
Sbjct: 113 MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIM 172
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D+ Q E + + + HT
Sbjct: 173 IHQPSGGARGQATDIAIQAEEIMKLKRQLYNIYAKHT 209
>MGI|MGI:1858213 [details] [associations]
symbol:Clpp "ClpP caseinolytic peptidase, ATP-dependent,
proteolytic subunit" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0006515 "misfolded or incompletely synthesized
protein catabolic process" evidence=ISA] [GO:0008233 "peptidase
activity" evidence=ISA] [GO:0008236 "serine-type peptidase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 MGI:MGI:1858213
GO:GO:0005739 GO:GO:0005524 GO:GO:0005759 GO:GO:0004252
GO:GO:0006515 eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 GeneTree:ENSGT00390000005830
OMA:LVHPPQA BRENDA:3.4.21.92 MEROPS:S14.003 CTD:8192
HOVERGEN:HBG001689 OrthoDB:EOG46T32D EMBL:AJ005253 EMBL:AJ012249
EMBL:AJ012250 EMBL:AJ012251 EMBL:AJ012252 EMBL:AJ012253
EMBL:AK004024 EMBL:AK145765 EMBL:AK168053 EMBL:BC001998
IPI:IPI00133270 RefSeq:NP_059089.1 UniGene:Mm.287892
ProteinModelPortal:O88696 SMR:O88696 STRING:O88696
PhosphoSite:O88696 REPRODUCTION-2DPAGE:IPI00133270
REPRODUCTION-2DPAGE:O88696 PaxDb:O88696 PRIDE:O88696
Ensembl:ENSMUST00000002735 GeneID:53895 KEGG:mmu:53895
UCSC:uc008ddm.2 InParanoid:O88696 NextBio:310791 Bgee:O88696
Genevestigator:O88696 GermOnline:ENSMUSG00000002660 Uniprot:O88696
Length = 272
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 59/157 (37%), Positives = 87/157 (55%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ G D+ S L R RI+ + PI+ VA I+QL+ L + I
Sbjct: 53 PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 112
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
MY+N PGG + + LAIYD M +I + T C G AAS +++LA G GMR+++PN+RIM
Sbjct: 113 MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIM 172
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D+ Q E + + + HT
Sbjct: 173 IHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHT 209
>UNIPROTKB|Q16740 [details] [associations]
symbol:CLPP "Putative ATP-dependent Clp protease
proteolytic subunit, mitochondrial" species:9606 "Homo sapiens"
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008233 "peptidase
activity" evidence=TAS] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005739
GO:GO:0005524 GO:GO:0005759 GO:GO:0006508 GO:GO:0004252
GO:GO:0008233 eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 OMA:LVHPPQA BRENDA:3.4.21.92
MEROPS:S14.003 CTD:8192 HOVERGEN:HBG001689 OrthoDB:EOG46T32D
EMBL:Z50853 EMBL:AK311973 EMBL:BC002956 IPI:IPI00003870 PIR:S68421
RefSeq:NP_006003.1 UniGene:Hs.515092 PDB:1TG6 PDBsum:1TG6
ProteinModelPortal:Q16740 SMR:Q16740 DIP:DIP-50384N IntAct:Q16740
STRING:Q16740 PhosphoSite:Q16740 DMDM:3023512 PaxDb:Q16740
PeptideAtlas:Q16740 PRIDE:Q16740 DNASU:8192 Ensembl:ENST00000245816
GeneID:8192 KEGG:hsa:8192 UCSC:uc002mem.1 GeneCards:GC19P006315
HGNC:HGNC:2084 HPA:HPA010649 MIM:601119 neXtProt:NX_Q16740
PharmGKB:PA26610 InParanoid:Q16740 PhylomeDB:Q16740
EvolutionaryTrace:Q16740 GenomeRNAi:8192 NextBio:30886
ArrayExpress:Q16740 Bgee:Q16740 CleanEx:HS_CLPP
Genevestigator:Q16740 GermOnline:ENSG00000125656 Uniprot:Q16740
Length = 277
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 59/157 (37%), Positives = 87/157 (55%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ G D+ S L R RI+ + PI+ VA I+QL+ L + I
Sbjct: 57 PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 116
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
MY+N PGG + + LAIYD M +I + T C G AAS +++LA G GMR+++PN+RIM
Sbjct: 117 MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIM 176
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D+ Q E + + + HT
Sbjct: 177 IHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHT 213
>UNIPROTKB|E2QUV8 [details] [associations]
symbol:CLPP "ATP-dependent Clp protease proteolytic
subunit" species:9615 "Canis lupus familiaris" [GO:0006508
"proteolysis" evidence=IEA] [GO:0004252 "serine-type endopeptidase
activity" evidence=IEA] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0006508 GO:GO:0004252 InterPro:IPR023562
PANTHER:PTHR10381 GeneTree:ENSGT00390000005830 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029683 OMA:NEESAME NextBio:20897274
Uniprot:E2QUV8
Length = 301
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 57/139 (41%), Positives = 81/139 (58%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+ AV+ P G D+ S L R RI+ + PI+ VA I+QL+ L + I MY
Sbjct: 83 LAAVLLPQGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMY 142
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG + S LAIYD M +I + T C G AAS +++LA G GMR+++PN+RIM++
Sbjct: 143 INSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIH 202
Query: 202 QPQSGSGGHVEDVKRQVNE 220
QP G+ G D+ Q E
Sbjct: 203 QPSGGARGQATDIAIQAEE 221
>TAIR|locus:2178282 [details] [associations]
symbol:NCLPP7 "nuclear-encoded CLP protease P7"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009840
"chloroplastic endopeptidase Clp complex" evidence=IDA] [GO:0005759
"mitochondrial matrix" evidence=IDA] [GO:0009532 "plastid stroma"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0050897 "cobalt ion binding" evidence=IDA] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005739
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008270
GO:GO:0006508 EMBL:AB006708 GO:GO:0004252 GO:GO:0050897
GO:GO:0009535 eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 OMA:LVHPPQA EMBL:AK118523
EMBL:BT005261 IPI:IPI00533430 RefSeq:NP_568427.1 UniGene:At.31024
PDB:1R8V PDBsum:1R8V ProteinModelPortal:Q9FN42 SMR:Q9FN42
STRING:Q9FN42 MEROPS:S14.A02 PaxDb:Q9FN42 PRIDE:Q9FN42
EnsemblPlants:AT5G23140.1 GeneID:832378 KEGG:ath:AT5G23140
GeneFarm:805 TAIR:At5g23140 InParanoid:Q9FN42 PhylomeDB:Q9FN42
ProtClustDB:CLSN2917700 Genevestigator:Q9FN42 GO:GO:0009840
Uniprot:Q9FN42
Length = 241
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 51/126 (40%), Positives = 76/126 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RII I PIN + ++QL+ L + + I MYLN PGG + + LAIY
Sbjct: 48 DIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIY 107
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+ + T+C G AAS A+++LA G KG R ++PNA +M++QP G G +D+
Sbjct: 108 DTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITI 167
Query: 217 QVNEAV 222
+ V
Sbjct: 168 HTKQIV 173
>UNIPROTKB|P0A526 [details] [associations]
symbol:clpP1 "ATP-dependent Clp protease proteolytic
subunit 1" species:1773 "Mycobacterium tuberculosis" [GO:0005829
"cytosol" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006508 GO:GO:0004252 EMBL:BX842579
eggNOG:COG0740 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 PIR:D70865 RefSeq:NP_337022.1
RefSeq:YP_006515898.1 RefSeq:YP_177883.1 PDB:2C8T PDB:2CBY PDB:2CE3
PDBsum:2C8T PDBsum:2CBY PDBsum:2CE3 ProteinModelPortal:P0A526
SMR:P0A526 MEROPS:S14.008 PhosSite:P12071649 PRIDE:P0A526
EnsemblBacteria:EBMYCT00000001586 EnsemblBacteria:EBMYCT00000071224
GeneID:13319171 GeneID:888176 GeneID:925798 KEGG:mtc:MT2536
KEGG:mtu:Rv2461c KEGG:mtv:RVBD_2461c PATRIC:18127330
TubercuList:Rv2461c OMA:DPTRDIS ProtClustDB:PRK00277
EvolutionaryTrace:P0A526 Uniprot:P0A526
Length = 200
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 53/127 (41%), Positives = 75/127 (59%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
L RIIF+G +N +A R +Q++ LA D DI +Y+N PGGSI + +AIYD M
Sbjct: 24 LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL 83
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE- 220
+ T G+AAS +LA G KG RYA+P+ARI+++QP G G D+ Q +
Sbjct: 84 APCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQF 143
Query: 221 AVISRHV 227
AVI + +
Sbjct: 144 AVIKKEM 150
>FB|FBgn0032229 [details] [associations]
symbol:CG5045 species:7227 "Drosophila melanogaster"
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0004252 "serine-type
endopeptidase activity" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
EMBL:AE014134 GO:GO:0006508 GO:GO:0004252 KO:K01358
InterPro:IPR023562 PANTHER:PTHR10381 GeneTree:ENSGT00390000005830
OMA:LVHPPQA MEROPS:S14.003 HSSP:P19245 EMBL:AY119497 EMBL:FM245207
RefSeq:NP_609388.1 UniGene:Dm.11171 SMR:Q9VKY3 MINT:MINT-974885
STRING:Q9VKY3 EnsemblMetazoa:FBtr0080000 EnsemblMetazoa:FBtr0332189
GeneID:34402 KEGG:dme:Dmel_CG5045 UCSC:CG5045-RA
FlyBase:FBgn0032229 InParanoid:Q9VKY3 OrthoDB:EOG4VHHP8
GenomeRNAi:34402 NextBio:788329 Uniprot:Q9VKY3
Length = 253
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 57/162 (35%), Positives = 91/162 (56%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L + RII + I ++ ++QL+ L + + +
Sbjct: 26 NINLIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKP 85
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGG + + LAIYD M ++KP + T C G A S +++LA G GMRY++PNAR
Sbjct: 86 IHLYINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNAR 145
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAV-ISRHVSLSFLLLHTLN 238
IM++QP G+ G D+ E + I R ++ + + H N
Sbjct: 146 IMIHQPSGGAQGQATDILIHAEEIIKIKRQLT-NIYVKHAKN 186
>TIGR_CMR|CBU_0738 [details] [associations]
symbol:CBU_0738 "ATP-dependent Clp protease, proteolytic
subunit ClpP" species:227377 "Coxiella burnetii RSA 493"
[GO:0009368 "endopeptidase Clp complex" evidence=ISS]
HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0004252 EMBL:AE016828
GenomeReviews:AE016828_GR MEROPS:S14.001 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
TIGRFAMs:TIGR00493 ProtClustDB:PRK00277 OMA:ARMNELM
RefSeq:NP_819764.1 PDB:3Q7H PDBsum:3Q7H ProteinModelPortal:Q83DJ2
SMR:Q83DJ2 GeneID:1208629 KEGG:cbu:CBU_0738 PATRIC:17930167
BioCyc:CBUR227377:GJ7S-735-MONOMER Uniprot:Q83DJ2
Length = 195
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 52/144 (36%), Positives = 88/144 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++R+IF+ + +A AI+Q++ L + + + DI +Y+N PGG++ S +AIY
Sbjct: 20 DIYSRLLKDRVIFLVGQVEDHMANLAIAQMLFLESENPNKDINLYINSPGGAVTSAMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G AAS A++LAGG KG R+ +P++ +M++Q G G D++
Sbjct: 80 DTMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQI 139
Query: 217 QVNEAV-ISRHVSLSFLLLHTLND 239
+ +S ++ L HT D
Sbjct: 140 HAKQTQRVSDQLN-QILAKHTGKD 162
>UNIPROTKB|G4MLM6 [details] [associations]
symbol:MGG_06757 "ATP-dependent Clp protease proteolytic
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0006508 GO:GO:0004252 EMBL:CM001231
MEROPS:S14.001 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
RefSeq:XP_003709471.1 ProteinModelPortal:G4MLM6
EnsemblFungi:MGG_06757T0 GeneID:2684930 KEGG:mgr:MGG_06757
Uniprot:G4MLM6
Length = 274
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 54/133 (40%), Positives = 77/133 (57%)
Query: 86 MPAV--MTPGG--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
MP V +T GG D+ S L + RI+ + PI+ +QL+ L I +Y
Sbjct: 49 MPLVTEVTAGGWRTSDIFSKLLQERIVCLNGPIDDWTQASVTAQLLWLEQDSPHKPITLY 108
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG + S LAIYD M++I V TVC G+AAS AI+L GG G RYA+P+++IM++
Sbjct: 109 INSPGGQVSSGLAIYDTMNYISSPVHTVCVGMAASMGAILLLGGAAGQRYALPHSQIMVH 168
Query: 202 QPQSGSGGHVEDV 214
QP + G D+
Sbjct: 169 QPLGSTQGQASDI 181
>WB|WBGene00014172 [details] [associations]
symbol:clpp-1 species:6239 "Caenorhabditis elegans"
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0030163 "protein catabolic process" evidence=IMP]
InterPro:IPR001907 InterPro:IPR018215 PRINTS:PR00127
PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574 GO:GO:0005524
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0005759 GO:GO:0006508 GO:GO:0010171
GO:GO:0040017 GO:GO:0040018 GO:GO:0004252 GO:GO:0040035
GO:GO:0030163 MEROPS:S14.001 eggNOG:COG0740 HOGENOM:HOG000285833
InterPro:IPR023562 PANTHER:PTHR10381 EMBL:Z49073 PIR:C88288
RefSeq:NP_001254239.1 RefSeq:NP_001254240.1 RefSeq:NP_001254241.1
ProteinModelPortal:Q27539 SMR:Q27539 STRING:Q27539 PaxDb:Q27539
EnsemblMetazoa:ZK970.2d GeneID:174594 KEGG:cel:CELE_ZK970.2
CTD:174594 WormBase:ZK970.2a WormBase:ZK970.2b WormBase:ZK970.2d
GeneTree:ENSGT00390000005830 InParanoid:Q27539 OMA:LVHPPQA
BRENDA:3.4.21.92 NextBio:884698 Uniprot:Q27539
Length = 221
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 55/145 (37%), Positives = 84/145 (57%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R+RI+ + P++ +A I+QL+ L + I MY+N PGGS+ + LAIY
Sbjct: 41 DIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKPIHMYINSPGGSVTAGLAIY 100
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D + I V T G A+S +++L GEKGMR A+PN+RIM++QP G+ G D+
Sbjct: 101 DTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSRIMVHQPSGGAQGTCSDIVI 160
Query: 215 --------KRQVNEAVISRHVSLSF 231
KR++NE + H +S+
Sbjct: 161 RAEEITRLKRRLNEIYV-HHTGMSY 184
>UNIPROTKB|P0C312 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:4530 "Oryza sativa" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
GO:GO:0005524 GO:GO:0009536 GO:GO:0006508 GO:GO:0004252
EMBL:AY522331 GO:GO:0009535 HOGENOM:HOG000285833 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 ProteinModelPortal:P0C312
Gramene:P0C312 Genevestigator:P0C312 Uniprot:P0C312
Length = 216
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 48/110 (43%), Positives = 70/110 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+DL +V++R R +F+GQ I V +V L+ D +DI +++N PGG + S +AI
Sbjct: 21 VDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAI 80
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
+D M + P + T+C G+AAS A+ IL GGE R A P+ARIML+QP S
Sbjct: 81 FDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPAS 130
>UNIPROTKB|P0C313 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:39946 "Oryza sativa Indica Group" [GO:0009536
"plastid" evidence=IC] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0005524 GO:GO:0009536 GO:GO:0006508
GO:GO:0004252 EMBL:AY522329 GO:GO:0009535 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 ProtClustDB:CHL00028
RefSeq:YP_654230.1 ProteinModelPortal:P0C313 GeneID:4126873
Gramene:P0C313 Uniprot:P0C313
Length = 216
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 48/110 (43%), Positives = 70/110 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+DL +V++R R +F+GQ I V +V L+ D +DI +++N PGG + S +AI
Sbjct: 21 VDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAI 80
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
+D M + P + T+C G+AAS A+ IL GGE R A P+ARIML+QP S
Sbjct: 81 FDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPAS 130
>UNIPROTKB|P0C314 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0009536
"plastid" evidence=IC] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382
Pfam:PF00574 GO:GO:0005524 GO:GO:0009536 GO:GO:0006508
GO:GO:0004252 EMBL:X15901 EMBL:AY522330 GenomeReviews:AY522330_GR
GO:GO:0009535 eggNOG:COG0740 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0009840 MEROPS:S14.002 ProtClustDB:CHL00028
PIR:JQ0251 RefSeq:NP_039410.1 ProteinModelPortal:P0C314
STRING:P0C314 GeneID:3131474 KEGG:osa:3131474 Gramene:P0C314
Uniprot:P0C314
Length = 216
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 48/110 (43%), Positives = 70/110 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+DL +V++R R +F+GQ I V +V L+ D +DI +++N PGG + S +AI
Sbjct: 21 VDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAI 80
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
+D M + P + T+C G+AAS A+ IL GGE R A P+ARIML+QP S
Sbjct: 81 FDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPAS 130
>UNIPROTKB|Q6ENE9 [details] [associations]
symbol:clpP "ATP-dependent Clp protease proteolytic
subunit" species:4536 "Oryza nivara" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_00444 InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 PROSITE:PS00382 Pfam:PF00574
GO:GO:0005524 GO:GO:0009536 GO:GO:0009570 GO:GO:0006508
GO:GO:0004252 EMBL:AP006728 InterPro:IPR023562 PANTHER:PTHR10381
RefSeq:YP_052774.1 ProteinModelPortal:Q6ENE9 MEROPS:S14.002
GeneID:2885922 Gramene:Q6ENE9 ProtClustDB:CHL00028 Uniprot:Q6ENE9
Length = 216
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 48/110 (43%), Positives = 70/110 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+DL +V++R R +F+GQ I V +V L+ D +DI +++N PGG + S +AI
Sbjct: 21 VDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAI 80
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
+D M + P + T+C G+AAS A+ IL GGE R A P+ARIML+QP S
Sbjct: 81 FDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPAS 130
>UNIPROTKB|Q6E6T0 [details] [associations]
symbol:Q6E6T0 "ATP-dependent Clp protease proteolytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0009536
"plastid" evidence=IC] HAMAP:MF_00444 InterPro:IPR001907
InterPro:IPR018215 PRINTS:PR00127 PROSITE:PS00382 Pfam:PF00574
GO:GO:0009536 GO:GO:0006508 GO:GO:0004252 GO:GO:0009535
HOGENOM:HOG000285833 InterPro:IPR023562 PANTHER:PTHR10381
GO:GO:0009840 EMBL:AY538587 ProteinModelPortal:Q6E6T0 STRING:Q6E6T0
Gramene:Q6E6T0 Uniprot:Q6E6T0
Length = 209
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 47/110 (42%), Positives = 69/110 (62%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+DL +V++R R +F+GQ I V +V L+ D +DI +++N PGG + S +AI
Sbjct: 14 VDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAI 73
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
+D M + P + +C G+AAS A+ IL GGE R A P+ARIML+QP S
Sbjct: 74 FDTMQTVTPDIYAICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPAS 123
>TAIR|locus:2130449 [details] [associations]
symbol:CLPR4 "CLP protease R subunit 4" species:3702
"Arabidopsis thaliana" [GO:0004252 "serine-type endopeptidase
activity" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009532 "plastid stroma" evidence=IDA]
[GO:0000302 "response to reactive oxygen species" evidence=IMP]
[GO:0010468 "regulation of gene expression" evidence=IMP]
[GO:0009627 "systemic acquired resistance" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0031347
"regulation of defense response" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR001907 PRINTS:PR00127
Pfam:PF00574 GO:GO:0009570 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006508 GO:GO:0009941 GO:GO:0004252 GO:GO:0000302
GO:GO:0010468 EMBL:Z97342 EMBL:AL161545 eggNOG:COG0740
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
EMBL:AK117499 EMBL:AY081275 EMBL:BT000050 EMBL:AY087492
IPI:IPI00525806 PIR:G71438 RefSeq:NP_567521.1 UniGene:At.19677
PDB:1R99 PDBsum:1R99 ProteinModelPortal:Q8LB10 SMR:Q8LB10
IntAct:Q8LB10 STRING:Q8LB10 PaxDb:Q8LB10 PRIDE:Q8LB10 ProMEX:Q8LB10
EnsemblPlants:AT4G17040.1 GeneID:827412 KEGG:ath:AT4G17040
GeneFarm:809 TAIR:At4g17040 InParanoid:Q8LB10 OMA:YFSPSEA
PhylomeDB:Q8LB10 ProtClustDB:CLSN2689477 Genevestigator:Q8LB10
Uniprot:Q8LB10
Length = 305
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG-------- 146
P DL+S LF+NRI+++G + V + +++ + L DE+ I +Y+N G
Sbjct: 103 PPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKL 162
Query: 147 GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206
G AIYD M ++KP + T+C G A +AA++L G KG R A+P++ IM+ QP +
Sbjct: 163 GYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIAR 222
Query: 207 SGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
G DV+ E +H+ + L++
Sbjct: 223 FQGQATDVEIARKEI---KHIKTEMVKLYS 249
>GENEDB_PFALCIPARUM|PF14_0348 [details] [associations]
symbol:PF14_0348 "ATP-dependent Clp protease
proteolytic subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0020011 "apicoplast" evidence=ISS] InterPro:IPR001907
PRINTS:PR00127 Pfam:PF00574 GO:GO:0006508 GO:GO:0004252
EMBL:AE014187 HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562
PANTHER:PTHR10381 GO:GO:0020011 RefSeq:XP_001348522.1 PDBsum:4GM2
PDBsum:4HNK HSSP:P19245 ProteinModelPortal:Q8IL98
EnsemblProtists:PF14_0348:mRNA GeneID:811930 KEGG:pfa:PF14_0348
EuPathDB:PlasmoDB:PF3D7_1436800 OMA:GDSAVMR ProtClustDB:CLSZ2847446
Uniprot:Q8IL98
Length = 244
Score = 150 (57.9 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 38/120 (31%), Positives = 63/120 (52%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG--------- 146
+++ S+L RIIF+ PI ++++ ISQL+ L + I +Y+N G
Sbjct: 58 INIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIIN 117
Query: 147 -GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
I V++I D +++I V T C G A A I+ + G+KG R+++ N+ LNQ S
Sbjct: 118 LNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYS 177
>UNIPROTKB|Q8IL98 [details] [associations]
symbol:PF14_0348 "ATP-dependent Clp protease proteolytic
subunit" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001907 PRINTS:PR00127
Pfam:PF00574 GO:GO:0006508 GO:GO:0004252 EMBL:AE014187
HOGENOM:HOG000285833 KO:K01358 InterPro:IPR023562 PANTHER:PTHR10381
GO:GO:0020011 RefSeq:XP_001348522.1 PDBsum:4GM2 PDBsum:4HNK
HSSP:P19245 ProteinModelPortal:Q8IL98
EnsemblProtists:PF14_0348:mRNA GeneID:811930 KEGG:pfa:PF14_0348
EuPathDB:PlasmoDB:PF3D7_1436800 OMA:GDSAVMR ProtClustDB:CLSZ2847446
Uniprot:Q8IL98
Length = 244
Score = 150 (57.9 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 38/120 (31%), Positives = 63/120 (52%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG--------- 146
+++ S+L RIIF+ PI ++++ ISQL+ L + I +Y+N G
Sbjct: 58 INIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIIN 117
Query: 147 -GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
I V++I D +++I V T C G A A I+ + G+KG R+++ N+ LNQ S
Sbjct: 118 LNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYS 177
>TAIR|locus:2031070 [details] [associations]
symbol:CLPR1 "CLP protease proteolytic subunit 1"
species:3702 "Arabidopsis thaliana" [GO:0004252 "serine-type
endopeptidase activity" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009840 "chloroplastic
endopeptidase Clp complex" evidence=IDA] [GO:0009532 "plastid
stroma" evidence=IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] InterPro:IPR001907 PRINTS:PR00127 Pfam:PF00574
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006508 GO:GO:0009941
GO:GO:0004252 GO:GO:0009534 EMBL:AC015445 eggNOG:COG0740
InterPro:IPR023562 PANTHER:PTHR10381 GO:GO:0009840 EMBL:AB022330
EMBL:AY045677 EMBL:BT000572 IPI:IPI00529610 PIR:T52451
RefSeq:NP_564560.1 UniGene:At.23793 UniGene:At.75198 PDB:1R96
PDBsum:1R96 ProteinModelPortal:Q9XJ35 SMR:Q9XJ35 IntAct:Q9XJ35
STRING:Q9XJ35 PaxDb:Q9XJ35 PRIDE:Q9XJ35 EnsemblPlants:AT1G49970.1
GeneID:841420 KEGG:ath:AT1G49970 GeneFarm:810 TAIR:At1g49970
HOGENOM:HOG000006365 InParanoid:Q9XJ35 OMA:AIDMWIK PhylomeDB:Q9XJ35
ProtClustDB:CLSN2688619 Genevestigator:Q9XJ35 Uniprot:Q9XJ35
Length = 387
Score = 145 (56.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 43/130 (33%), Positives = 66/130 (50%)
Query: 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG-------- 146
P DL S+L RI ++G PI V + ++Q + L + I +Y+N PG
Sbjct: 169 PPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMET 228
Query: 147 -GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ- 204
GS AI D +S+ K V T+ G+A QAA++L+ G+KG R P++ L P+
Sbjct: 229 VGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKV 288
Query: 205 SGSGGHVEDV 214
+ S G D+
Sbjct: 289 NRSSGAAIDM 298
>TIGR_CMR|SO_2964 [details] [associations]
symbol:SO_2964 "ClpP protease family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0006508
"proteolysis" evidence=ISS] InterPro:IPR001907 InterPro:IPR018215
PRINTS:PR00127 PROSITE:PS00381 Pfam:PF00574 GO:GO:0006508
GO:GO:0004252 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR023562 PANTHER:PTHR10381 RefSeq:NP_718533.1
ProteinModelPortal:Q8ED07 GeneID:1170652 KEGG:son:SO_2964
PATRIC:23525568 HOGENOM:HOG000138775 OMA:NSPGGDF
ProtClustDB:CLSK865009 Uniprot:Q8ED07
Length = 284
Score = 127 (49.8 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 129 LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKG 188
L +I + D+ +Y+N PGG ++ +AIY+ + K KV T G+AAS A++I GE
Sbjct: 63 LRSIGNEKDVTVYINSPGGDMFEGIAIYNRLREHKGKVTTKVLGLAASAASVIYMAGEDD 122
Query: 189 MRYAMPNARIMLN 201
R+ +A +M++
Sbjct: 123 ARFVASSAFLMIH 135
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 240 210 0.00080 112 3 11 22 0.50 32
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 600 (64 KB)
Total size of DFA: 162 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.37u 0.10s 20.47t Elapsed: 00:00:01
Total cpu time: 20.38u 0.10s 20.48t Elapsed: 00:00:01
Start: Fri May 10 09:36:31 2013 End: Fri May 10 09:36:32 2013