BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026362
(240 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449462250|ref|XP_004148854.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Cucumis sativus]
gi|449515355|ref|XP_004164715.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Cucumis sativus]
Length = 274
Score = 349 bits (895), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 171/227 (75%), Positives = 191/227 (84%), Gaps = 1/227 (0%)
Query: 1 MVASAISASLSFSATSLNRTFA-SFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPL 59
+VAS +ASLSFS S NR + S S RNS RSIVSA P PYGDSS+ GLS + G PL
Sbjct: 2 VVASPFTASLSFSVASNNRASSISQLSRRNSHRSIVSAFPRPYGDSSTIGLSSKTNGAPL 61
Query: 60 KIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVA 119
+D+KDF T SY+ I + DNPP+MPAVMTPGGPLDLSSVLFRNRIIFIGQPINS VA
Sbjct: 62 NLDDKDFLRTSTSYEPIVARRDNPPVMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSTVA 121
Query: 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 179
QR ISQLVTLATIDEDADIL+YLNCPGGS YS+LAIYDCMSWIKPKVGTVCFG+ ASQ A
Sbjct: 122 QRVISQLVTLATIDEDADILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGIVASQGA 181
Query: 180 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
++LAGGEKGMRYAMPN+RIM++QPQSG GG VEDV+RQVNEAV SR+
Sbjct: 182 LLLAGGEKGMRYAMPNSRIMIHQPQSGCGGDVEDVRRQVNEAVQSRN 228
>gi|255556085|ref|XP_002519077.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
gi|223541740|gb|EEF43288.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
Length = 277
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/230 (75%), Positives = 189/230 (82%), Gaps = 4/230 (1%)
Query: 1 MVASAISASLSFSATSLNRTFASFFS---NRNSSRSIVSAL-PSPYGDSSSGGLSIRNRG 56
+VASAI+A +SFS S N+T S S +R S+R IVS+L SPY DSS GGLS R G
Sbjct: 2 VVASAITAPVSFSIFSTNKTLPSVSSSSFHRVSARFIVSSLNSSPYRDSSIGGLSSRRSG 61
Query: 57 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 116
LPL IDEK+ SY I K NPP+MPAVMTPGGPLDL SVLFRNRIIFIGQPINS
Sbjct: 62 LPLSIDEKNSHRATQSYITIEAKKGNPPIMPAVMTPGGPLDLQSVLFRNRIIFIGQPINS 121
Query: 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 176
VAQR ISQLVTLATIDE++DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAAS
Sbjct: 122 QVAQRVISQLVTLATIDENSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAAS 181
Query: 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
Q A++LAGGEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV SRH
Sbjct: 182 QGALLLAGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQSRH 231
>gi|356538797|ref|XP_003537887.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Glycine max]
Length = 273
Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 188/229 (82%), Gaps = 5/229 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
MV A+S AS SF+ S R+ + FS+RN SI S+LP+PYG SS GLS ++RG
Sbjct: 1 MVPQALSVPASASFTIASRTRSPSHLVFSHRNPC-SIASSLPNPYGHSSGVGLSSKSRGF 59
Query: 58 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
PLK+DEK+ SY I K NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 PLKLDEKNIHGASTSYGAIEAKG-NPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQ 118
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQR ISQLVTLATIDE+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
A++LAGGEKGMRYAMPNARIM++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 179 GALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRH 227
>gi|255636441|gb|ACU18559.1| unknown [Glycine max]
Length = 273
Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 188/229 (82%), Gaps = 5/229 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
MV A+S AS SF+ S R+ + FS+RN SI S+LP+PYG SS GLS ++RG
Sbjct: 1 MVPQALSVPASASFTIASRTRSPSHLVFSHRNPC-SIASSLPNPYGHSSGVGLSSKSRGF 59
Query: 58 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
PLK+DEK+ SY I K NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 PLKLDEKNIHGASTSYGAIEAKG-NPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQ 118
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQR ISQLVTLATIDE+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
A++LAGGEKGMRYAMPNARIM++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 179 GALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRH 227
>gi|356545265|ref|XP_003541065.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Glycine max]
Length = 273
Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 163/229 (71%), Positives = 184/229 (80%), Gaps = 5/229 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
MV A+S AS S + S R+ + FS RN SI S+LP+PYG SS GLS ++RG
Sbjct: 1 MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPC-SIASSLPNPYGHSSEVGLSSKSRGF 59
Query: 58 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
PLK DEK+ SY I K NPP+ PAVMTPGGPLDL+SVLFRNRIIFIGQP+NS
Sbjct: 60 PLKHDEKNIHGASTSYGAIEAKG-NPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQ 118
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQR ISQLVTLATI+E+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
A++LAGGEKGMRYAMPNARI ++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 179 GALLLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDVRRQVNEAVQSRH 227
>gi|255646657|gb|ACU23802.1| unknown [Glycine max]
Length = 273
Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 162/229 (70%), Positives = 181/229 (79%), Gaps = 5/229 (2%)
Query: 1 MVASAISASLSFSATSLNRTFAS---FFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
MV A+S S S +RT + FS RN SI S+LP+PYG SS GLS ++RG
Sbjct: 1 MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPC-SIASSLPNPYGHSSEVGLSSKSRGF 59
Query: 58 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
PLK DEK+ SY I K NPP+ PAVMTPGGPLDL+SVLFRNRIIFIGQP+NS
Sbjct: 60 PLKHDEKNIHGASTSYGTIEAKG-NPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQ 118
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQR ISQLVTLATI+E+ADIL+Y+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 119 VAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 178
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
A+ LAGGEKGMRYAMPNARI ++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 179 GALFLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDVRRQVNEAVQSRH 227
>gi|357473193|ref|XP_003606881.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|355507936|gb|AES89078.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
Length = 237
Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 160/234 (68%), Positives = 183/234 (78%), Gaps = 4/234 (1%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 58 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
LK+DEK SY +I K NPP+ PA+MTPGG LDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 RLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQ 119
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 120 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 179
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSF 231
++LAGGEKGMRY+MPNARIM+NQPQ G GGHVEDV+R VNE+V SR+VSLSF
Sbjct: 180 GTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRYVSLSF 233
>gi|224080315|ref|XP_002306094.1| predicted protein [Populus trichocarpa]
gi|118485273|gb|ABK94496.1| unknown [Populus trichocarpa]
gi|222849058|gb|EEE86605.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/226 (70%), Positives = 181/226 (80%), Gaps = 12/226 (5%)
Query: 3 ASAISA-SLSFSATSLNRTFA-SFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLK 60
ASAISA + SFS ++ + S FS+R +S +VSALP PY DSS+ L L+
Sbjct: 4 ASAISAPATSFSIFPRAKSPSLSLFSHRRNS--VVSALPRPYSDSSTR--------LSLR 53
Query: 61 IDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQ 120
IDEK F + SY + K NPP+MPAVMTPGGP+DLSSVLFRNRIIFIGQPINS VAQ
Sbjct: 54 IDEKGFRDAKQSYVTVEAKGGNPPIMPAVMTPGGPMDLSSVLFRNRIIFIGQPINSQVAQ 113
Query: 121 RAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 180
R ISQLVTLATIDE DIL+YLNCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ A+
Sbjct: 114 RVISQLVTLATIDEKTDILLYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGAL 173
Query: 181 ILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
+L+GGEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV +RH
Sbjct: 174 LLSGGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQARH 219
>gi|388515053|gb|AFK45588.1| unknown [Lotus japonicus]
Length = 275
Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/230 (69%), Positives = 182/230 (79%), Gaps = 5/230 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSG-GLSIRNRG 56
M A A+S A+ +F S T + FS+RN + I S L SPYG SS GLS ++ G
Sbjct: 1 MAAQAVSVPATATFPIASRRNTPSHLAFSHRNLCQ-IASNLSSPYGGHSSKFGLSSKSPG 59
Query: 57 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 116
PLK+DEK+ SY I K NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+N+
Sbjct: 60 FPLKLDEKNTYDASTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNA 119
Query: 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 176
VAQR ISQLVTLATID +ADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAAS
Sbjct: 120 QVAQRVISQLVTLATIDPNADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAAS 179
Query: 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
Q A++LAGGEKGMRY+MPN+RIM++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 180 QGALLLAGGEKGMRYSMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRH 229
>gi|297844024|ref|XP_002889893.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp.
lyrata]
gi|297335735|gb|EFH66152.1| hypothetical protein ARALYDRAFT_471314 [Arabidopsis lyrata subsp.
lyrata]
Length = 271
Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 180/230 (78%), Gaps = 9/230 (3%)
Query: 1 MVASAISA--SLSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDSSSGGLSIRNRG 56
M AIS LSFS+ + N S+ S+ RN R IVSALPSPYGDS GLS G
Sbjct: 1 MAGLAISPPLGLSFSSRTRNPKPTSYLSHNPRNPIRRIVSALPSPYGDSLKAGLSSNVSG 60
Query: 57 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 116
P+KID KD + +I K NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+
Sbjct: 61 SPIKIDNKD-----PRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINA 115
Query: 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 176
VAQR ISQLVTLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTV FGVAAS
Sbjct: 116 QVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAAS 175
Query: 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
Q A++LAGGEKGMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R
Sbjct: 176 QGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQ 225
>gi|359475286|ref|XP_003631636.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like [Vitis vinifera]
gi|297741435|emb|CBI32566.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 162/227 (71%), Positives = 180/227 (79%), Gaps = 5/227 (2%)
Query: 1 MVASAISASLSFSATSLNRTFA-SFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPL 59
MVASAIS +LS S S N + + SFFS R S++ IVSAL S S GL L
Sbjct: 1 MVASAISTTLSSSIVSRNTSSSISFFSPRYSTKPIVSALSKSSSIGLSSKTS----GLSL 56
Query: 60 KIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVA 119
K+DE+ + SY I K NPP+ P+VMTPGGPLDLS+VLFR+RIIFIGQPINSMVA
Sbjct: 57 KVDERGRHAGNPSYGAIEAKKGNPPVAPSVMTPGGPLDLSTVLFRSRIIFIGQPINSMVA 116
Query: 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 179
QR ISQLVTLA IDEDADILMYLNCPGGS YSVLAIYDCM+WIKPKVGTVCFGVAASQ A
Sbjct: 117 QRVISQLVTLAAIDEDADILMYLNCPGGSTYSVLAIYDCMAWIKPKVGTVCFGVAASQGA 176
Query: 180 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
++LAGGEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV SRH
Sbjct: 177 LLLAGGEKGMRYAMPNARIMVHQPQGGCGGHVEDVRRQVNEAVQSRH 223
>gi|18391311|ref|NP_563893.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
thaliana]
gi|75313132|sp|Q9SAA2.1|CLPP6_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic; AltName: Full=Endopeptidase ClpP6;
Short=nClpP6; AltName: Full=nClpP1; Flags: Precursor
gi|4835782|gb|AAD30248.1|AC007296_9 Identical to gb|AF016621 ATP-dependent Clp protease proteolytic
subunit from Arabidopsis thaliana and is a member of the
PF|00574 CLP_protease family. ESTs gb|F13836 and
gb|F13997 come from this gene [Arabidopsis thaliana]
gi|13194778|gb|AAK15551.1|AF348580_1 putative ATP-dependent Clp protease proteolytic subunit ClpP6
[Arabidopsis thaliana]
gi|21592854|gb|AAM64804.1| ATP-dependent Clp protease proteolytic subunit (ClpP6) [Arabidopsis
thaliana]
gi|110737993|dbj|BAF00932.1| putative ATP-dependent Clp protease proteolytic subunit
[Arabidopsis thaliana]
gi|332190657|gb|AEE28778.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
thaliana]
Length = 271
Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 153/219 (69%), Positives = 174/219 (79%), Gaps = 7/219 (3%)
Query: 10 LSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDEKDFC 67
LSFS+ + N SF S+ RN R IVSAL SPYGDS GLS G P+KID K
Sbjct: 12 LSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNK--- 68
Query: 68 STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
+ +I K NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+ VAQR ISQLV
Sbjct: 69 --APRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLV 126
Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
TLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTV FGVAASQ A++LAGGEK
Sbjct: 127 TLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEK 186
Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
GMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R
Sbjct: 187 GMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQ 225
>gi|217073352|gb|ACJ85035.1| unknown [Medicago truncatula]
Length = 274
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/229 (67%), Positives = 178/229 (77%), Gaps = 4/229 (1%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 58 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
LK+DEK SY +I K NPP+ PA+MTPGG LDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 RLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQ 119
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 120 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 179
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
++LAGGEKGMRY+MPNARIM+NQPQ G GGHVEDV+R VNE+V SR+
Sbjct: 180 GTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRY 228
>gi|357473191|ref|XP_003606880.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|355507935|gb|AES89077.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|388499646|gb|AFK37889.1| unknown [Medicago truncatula]
Length = 274
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/229 (67%), Positives = 178/229 (77%), Gaps = 4/229 (1%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 58 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
LK+DEK SY +I K NPP+ PA+MTPGG LDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 RLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQ 119
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 120 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 179
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
++LAGGEKGMRY+MPNARIM+NQPQ G GGHVEDV+R VNE+V SR+
Sbjct: 180 GTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRY 228
>gi|388520211|gb|AFK48167.1| unknown [Lotus japonicus]
Length = 275
Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 181/230 (78%), Gaps = 5/230 (2%)
Query: 1 MVASAIS--ASLSFS-ATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSG-GLSIRNRG 56
M A A+S A+ +FS A+ N FS+RN + I S L SPYG SS GLS ++ G
Sbjct: 1 MAAQAVSVPATATFSIASRRNAPSHLAFSHRNLCQ-IASNLSSPYGGHSSKFGLSSKSPG 59
Query: 57 LPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINS 116
PLK+DEK+ SY I K NPP+ PAVMTPGGPLDLSSVLFRNRIIFIGQP+N+
Sbjct: 60 FPLKLDEKNTYDASTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNA 119
Query: 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 176
VAQR +SQLVTLATI +ADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVC GVAAS
Sbjct: 120 QVAQRVVSQLVTLATIYPNADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCSGVAAS 179
Query: 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
Q A++LAGGEKGMRY+MPN+RIM++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 180 QGALLLAGGEKGMRYSMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRH 229
>gi|2827888|gb|AAB99906.1| ATP-dependent Clp protease proteolytic subunit [Arabidopsis
thaliana]
Length = 271
Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 152/219 (69%), Positives = 171/219 (78%), Gaps = 7/219 (3%)
Query: 10 LSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDEKDFC 67
LSFS+ + N SF S+ RN R IVSAL SPYGDS GLS G P+KID K
Sbjct: 12 LSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNK--- 68
Query: 68 STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
+ +I K NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+ VAQR ISQLV
Sbjct: 69 --APRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLV 126
Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
TLA+ID+ +DILMYLNCPGGS YSVL IYDCMSWIKPKVGTV FGVAASQ A LAGGEK
Sbjct: 127 TLASIDDKSDILMYLNCPGGSTYSVLTIYDCMSWIKPKVGTVAFGVAASQGAFFLAGGEK 186
Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
GMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R
Sbjct: 187 GMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQ 225
>gi|334182483|ref|NP_001184966.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
thaliana]
gi|332190658|gb|AEE28779.1| ATP-dependent Clp protease proteolytic subunit 6 [Arabidopsis
thaliana]
Length = 289
Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/232 (65%), Positives = 175/232 (75%), Gaps = 15/232 (6%)
Query: 10 LSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDEK--- 64
LSFS+ + N SF S+ RN R IVSAL SPYGDS GLS G P+KID K
Sbjct: 12 LSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNKAPS 71
Query: 65 ----------DFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPI 114
+ + +I K NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPI
Sbjct: 72 SLPLPILNILKSSTVYFIFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPI 131
Query: 115 NSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174
N+ VAQR ISQLVTLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTV FGVA
Sbjct: 132 NAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVA 191
Query: 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
ASQ A++LAGGEKGMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R
Sbjct: 192 ASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQ 243
>gi|9968665|emb|CAC06126.1| putative ATP-dependent clp serine protease proteolytic subunit
[Pisum sativum]
Length = 246
Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/202 (72%), Positives = 164/202 (81%), Gaps = 1/202 (0%)
Query: 25 FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPP 84
FS+RN +I S+LPSPY SS GLS + G LK DEK+ SY +I K NPP
Sbjct: 22 FSHRNPC-TIASSLPSPYVHSSKIGLSSKAHGFRLKFDEKNTHDVSTSYGVIEAKKGNPP 80
Query: 85 LMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNC 144
+ PAVMTPGG +DLSSVLFRNRIIFIGQPIN+ +AQR ISQLVTLATID DADILMY+NC
Sbjct: 81 ISPAVMTPGGAIDLSSVLFRNRIIFIGQPINAQMAQRVISQLVTLATIDPDADILMYINC 140
Query: 145 PGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204
GGS YSVLA+YDCMSWIKPKVGTVCFGVAASQA ++LAGGEKGMRY+MPNARIM+ QP+
Sbjct: 141 AGGSTYSVLAVYDCMSWIKPKVGTVCFGVAASQATLLLAGGEKGMRYSMPNARIMMGQPR 200
Query: 205 SGSGGHVEDVKRQVNEAVISRH 226
G GGHVEDVKR VNEAV SRH
Sbjct: 201 CGFGGHVEDVKRLVNEAVQSRH 222
>gi|350535034|ref|NP_001234684.1| clp-like energy-dependent protease [Solanum lycopersicum]
gi|602758|gb|AAA81878.1| clp-like energy-dependent protease [Solanum lycopersicum]
Length = 275
Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/229 (67%), Positives = 179/229 (78%), Gaps = 3/229 (1%)
Query: 1 MVASAISASLSFSATSLNRTFASFFSNRNSS-RSIVSALPSPYGDSSSGGLSIRNRGLPL 59
MV SAI+ + +S ++T S + S +++VS L SPY DSS G S + G+PL
Sbjct: 1 MVTSAIAGTSIVPVSSRHQTSFSSLLSSRSLRKNVVSVLRSPYSDSSDIGFSSKKLGIPL 60
Query: 60 KIDEKDF-CSTEHSYKIISGKND-NPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
K +E + T SY +I K NPP+MPAVMTP G LDLS+VLFRNRIIFIGQP+NS
Sbjct: 61 KFNEYESGAHTNSSYGVIVAKEGANPPIMPAVMTPVGALDLSTVLFRNRIIFIGQPVNSA 120
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQ+ ISQLVTLATIDE+ADIL+YLNCPGGS YSVLAIYDCMSWIKPKVGTVCFG AASQ
Sbjct: 121 VAQKVISQLVTLATIDENADILIYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGAAASQ 180
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
A++LAGGEKGMRYAMPNARIM++QPQSG GGHVEDV+RQVNEAV SR
Sbjct: 181 GALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRQ 229
>gi|224103437|ref|XP_002313056.1| predicted protein [Populus trichocarpa]
gi|222849464|gb|EEE87011.1| predicted protein [Populus trichocarpa]
Length = 246
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 168/223 (75%), Gaps = 30/223 (13%)
Query: 4 SAISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDE 63
SA +A S S+ + + + F RNS +VSALP P DSS+ S++ RG
Sbjct: 8 SAPAAIFSISSRTKPPSLSIFSHGRNS---VVSALPRPSSDSST---SLKARG------- 54
Query: 64 KDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAI 123
NPP+MPAVMTPGGPLDLSSVLFRNRIIFIGQPINS VAQR I
Sbjct: 55 -----------------GNPPIMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSQVAQRVI 97
Query: 124 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 183
SQLVTLATIDE+ADILMYLNCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ A++LA
Sbjct: 98 SQLVTLATIDENADILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLA 157
Query: 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
GGEKGMRYAMPNARIM++QPQ G GGHVEDV+RQVNEAV +RH
Sbjct: 158 GGEKGMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQARH 200
>gi|2921510|gb|AAC04810.1| clp-like energy-dependent protease [Fritillaria agrestis]
Length = 267
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/171 (78%), Positives = 150/171 (87%), Gaps = 1/171 (0%)
Query: 57 LPLKIDEKDFCSTEHSYK-IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPIN 115
LPLK+ + C + Y +I K NPP+MPAVMTPGGPLDLSSVLFRNRIIFIGQP+N
Sbjct: 51 LPLKLTDPASCHSASRYDAVIEAKRGNPPMMPAVMTPGGPLDLSSVLFRNRIIFIGQPVN 110
Query: 116 SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAA 175
S VAQR ISQLVTLATIDE++DIL+YLNCPGGS YS+LAIYDCMSWIKPKVGTVCFGVAA
Sbjct: 111 SQVAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAA 170
Query: 176 SQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
SQ A++LAGGEKGMRY MPNARIM++QPQSG GGHVEDV+RQVNEAV SRH
Sbjct: 171 SQGALLLAGGEKGMRYTMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRH 221
>gi|147800090|emb|CAN70935.1| hypothetical protein VITISV_032484 [Vitis vinifera]
Length = 229
Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 134/178 (75%), Positives = 145/178 (81%), Gaps = 9/178 (5%)
Query: 49 GLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRII 108
GLS + GL LK+D + SY I K NPP+ P+VMTPGGPLDLS+VLFR+RII
Sbjct: 6 GLSSKTSGLSLKVDGXGRHAGNPSYGAIEAKKGNPPVAPSVMTPGGPLDLSTVLFRSRII 65
Query: 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGT 168
FIGQPINSMVAQR ISQLVTLA IDEDADILMYLNCPGGS YSVLAIYDCM+WIKPKVGT
Sbjct: 66 FIGQPINSMVAQRVISQLVTLAAIDEDADILMYLNCPGGSTYSVLAIYDCMAWIKPKVGT 125
Query: 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
VCFGVAASQ A++LAGGEKGMRYAMPNARIM GHVEDV+RQVNEAV SRH
Sbjct: 126 VCFGVAASQGALLLAGGEKGMRYAMPNARIM---------GHVEDVRRQVNEAVQSRH 174
>gi|242066888|ref|XP_002454733.1| hypothetical protein SORBIDRAFT_04g036413 [Sorghum bicolor]
gi|241934564|gb|EES07709.1| hypothetical protein SORBIDRAFT_04g036413 [Sorghum bicolor]
Length = 276
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 120/164 (73%), Positives = 142/164 (86%), Gaps = 1/164 (0%)
Query: 63 EKDFC-STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQR 121
E+ C S+ I++ +N+NPPLMPA+MTPGG LDL++VL NR+IFIGQ INS VAQR
Sbjct: 66 ERIHCRSSLRQNTIVASENENPPLMPAIMTPGGALDLATVLLGNRVIFIGQYINSQVAQR 125
Query: 122 AISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 181
ISQLVTLA +DE+ADIL+YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFGV ASQAAII
Sbjct: 126 VISQLVTLAAVDEEADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAII 185
Query: 182 LAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
LAGGEKGMRYAMPNAR+M++QPQ GS G+VE+V+RQV E V +R
Sbjct: 186 LAGGEKGMRYAMPNARVMIHQPQGGSEGNVEEVRRQVGETVYAR 229
>gi|224551502|gb|ACN54193.1| Clp-P protease subunit [Triticum aestivum]
Length = 266
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 149/179 (83%), Gaps = 3/179 (1%)
Query: 49 GLSIRNRGLPLKIDEKDFCSTEHSYK--IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNR 106
GL + G+ ++DE+ S ++ K I++ +N+NPPLMPA+MTPGGPLDL++VL NR
Sbjct: 42 GLQVLTSGVSARLDER-IHSQSYTRKNTIVASENENPPLMPAIMTPGGPLDLATVLLGNR 100
Query: 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKV 166
IIFIGQ +NS VAQR ISQLVTL+ IDE+ DIL+YLNCPGGS+YS+LAIYDCMSWI PKV
Sbjct: 101 IIFIGQYVNSQVAQRVISQLVTLSAIDEEGDILIYLNCPGGSLYSILAIYDCMSWISPKV 160
Query: 167 GTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
GTVCFGV ASQAAIILAGGEKGMRYAMPNAR+M++QPQ GS G+ E+V+RQV E + +R
Sbjct: 161 GTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNTEEVRRQVGETIYAR 219
>gi|357111858|ref|XP_003557727.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 259
Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 147/181 (81%), Gaps = 7/181 (3%)
Query: 49 GLSIRNRGLPLKIDEKDFCSTEHSY----KIISGKNDNPPLMPAVMTPGGPLDLSSVLFR 104
GL G+ ++D + C HSY I++ +N+NPPLMPA+MTPGGPLDL++VL
Sbjct: 35 GLQFVTPGVSARLDGRIHC---HSYLRQNAIVASENENPPLMPAIMTPGGPLDLATVLLG 91
Query: 105 NRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKP 164
NRIIFIGQ INS VAQR ISQLVTL+ IDE+ DIL+YLNCPGGS+YS+LAIYDCMSWI P
Sbjct: 92 NRIIFIGQYINSQVAQRVISQLVTLSAIDEEGDILIYLNCPGGSLYSILAIYDCMSWIAP 151
Query: 165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVIS 224
KVGTVCFGV ASQAAIILAGGEKGMRYAMPNAR+M++QPQ GS G+ E+V+RQV E + +
Sbjct: 152 KVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNTEEVRRQVGETIYA 211
Query: 225 R 225
R
Sbjct: 212 R 212
>gi|115453497|ref|NP_001050349.1| Os03g0411500 [Oryza sativa Japonica Group]
gi|57222443|gb|AAO37504.2| putative clp-like energy-dependent protease [Oryza sativa Japonica
Group]
gi|108708774|gb|ABF96569.1| Clp protease family protein, expressed [Oryza sativa Japonica
Group]
gi|113548820|dbj|BAF12263.1| Os03g0411500 [Oryza sativa Japonica Group]
gi|215678629|dbj|BAG92284.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765082|dbj|BAG86779.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 259
Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 160/226 (70%), Gaps = 15/226 (6%)
Query: 1 MVASAISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLK 60
M AIS L+ A+ S R S ALP P G+ K
Sbjct: 1 MAPMAISTPLALRASP-----TRLLSRRRSGAKSGVALPGP---------QFVPPGISSK 46
Query: 61 IDEKDFC-STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVA 119
+DE+ C S+ I++ +N+NPPLMPA+MTP G LDL++VL NRIIFIGQ INS VA
Sbjct: 47 LDERIHCHSSLRKNTIVASENENPPLMPAIMTPAGALDLATVLLGNRIIFIGQYINSQVA 106
Query: 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 179
QR ISQLVTLA +DE+ADIL+YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFGV ASQAA
Sbjct: 107 QRVISQLVTLAAVDEEADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAA 166
Query: 180 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
IILAGGEKGMRYAMPNAR+M++QPQ S G+VE+V+RQV E + +R
Sbjct: 167 IILAGGEKGMRYAMPNARVMIHQPQGVSEGNVEEVRRQVGETIYAR 212
>gi|357111860|ref|XP_003557728.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 6,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 266
Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/181 (67%), Positives = 147/181 (81%), Gaps = 7/181 (3%)
Query: 49 GLSIRNRGLPLKIDEKDFCSTEHSY----KIISGKNDNPPLMPAVMTPGGPLDLSSVLFR 104
GL G+ ++D + C HSY I++ +N+NPPLMPA+MTPGGPLDL++VL
Sbjct: 42 GLQFVTPGVSARLDGRIHC---HSYLRQNAIVASENENPPLMPAIMTPGGPLDLATVLLG 98
Query: 105 NRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKP 164
NRIIFIGQ INS VAQR ISQLVTL+ IDE+ DIL+YLNCPGGS+YS+LAIYDCMSWI P
Sbjct: 99 NRIIFIGQYINSQVAQRVISQLVTLSAIDEEGDILIYLNCPGGSLYSILAIYDCMSWIAP 158
Query: 165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVIS 224
KVGTVCFGV ASQAAIILAGGEKGMRYAMPNAR+M++QPQ GS G+ E+V+RQV E + +
Sbjct: 159 KVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGGSEGNTEEVRRQVGETIYA 218
Query: 225 R 225
R
Sbjct: 219 R 219
>gi|226509256|ref|NP_001140712.1| uncharacterized protein LOC100272787 [Zea mays]
gi|194689904|gb|ACF79036.1| unknown [Zea mays]
gi|194700704|gb|ACF84436.1| unknown [Zea mays]
gi|194702420|gb|ACF85294.1| unknown [Zea mays]
gi|194703926|gb|ACF86047.1| unknown [Zea mays]
gi|194708092|gb|ACF88130.1| unknown [Zea mays]
gi|413939370|gb|AFW73921.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 292
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 118/151 (78%), Positives = 137/151 (90%)
Query: 75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
I++ +N+NPPLMPA+MTPGG LDL++VL NRIIFIGQ INS VAQR ISQLVTLA IDE
Sbjct: 95 IVASENENPPLMPAIMTPGGALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAIDE 154
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
+ADIL+YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFGV ASQAAIILAGGEKGMRYAMP
Sbjct: 155 EADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMP 214
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
NAR+M++QPQ GS G+VE+V+RQV E + +R
Sbjct: 215 NARVMIHQPQGGSEGNVEEVRRQVGETIYAR 245
>gi|195644476|gb|ACG41706.1| hypothetical protein [Zea mays]
Length = 292
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 118/151 (78%), Positives = 137/151 (90%)
Query: 75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
I++ +N+NPPLMPA+MTPGG LDL++VL NRIIFIGQ INS VAQR ISQLVTLA IDE
Sbjct: 95 IVASENENPPLMPAIMTPGGALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAIDE 154
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
+ADIL+YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFGV ASQAAIILAGGEKGMRYAMP
Sbjct: 155 EADILIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMP 214
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
NAR+M++QPQ GS G+VE+V+RQV E + +R
Sbjct: 215 NARVMIHQPQGGSEGNVEEVRRQVGETIYAR 245
>gi|326519849|dbj|BAK03849.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 228
Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 127/230 (55%), Positives = 165/230 (71%), Gaps = 15/230 (6%)
Query: 5 AISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDEK 64
AIS +L+ A+ + FS+R + S L G+ + G+ ++DE+
Sbjct: 6 AISTALAIRASP-----SCLFSHRGNGSSASPGLR---------GMQVLTSGVSARLDER 51
Query: 65 DFCSTE-HSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAI 123
+ I++ +N+NPPLMPA+MTPGG LDL++VL NRIIFIGQ +NS VAQR I
Sbjct: 52 IHGQSYLRKNTIVASENENPPLMPAIMTPGGSLDLATVLLGNRIIFIGQYVNSQVAQRVI 111
Query: 124 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 183
SQLV+L+ IDE+ D+L+YLNCPGGS+YS+LAIYDCMSWI PKVGTVCFGV ASQAAIILA
Sbjct: 112 SQLVSLSAIDEEGDVLIYLNCPGGSLYSILAIYDCMSWITPKVGTVCFGVVASQAAIILA 171
Query: 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLL 233
GGEKGMRYAMPNAR+M++QPQ GS G+ E+V+RQV E + +R ++ LL
Sbjct: 172 GGEKGMRYAMPNARVMIHQPQGGSEGNTEEVRRQVGETIYARDLTKCLLL 221
>gi|413939369|gb|AFW73920.1| hypothetical protein ZEAMMB73_577797 [Zea mays]
Length = 294
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/153 (77%), Positives = 137/153 (89%), Gaps = 2/153 (1%)
Query: 75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
I++ +N+NPPLMPA+MTPGG LDL++VL NRIIFIGQ INS VAQR ISQLVTLA IDE
Sbjct: 95 IVASENENPPLMPAIMTPGGALDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAIDE 154
Query: 135 DADIL--MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 192
+ADIL +YLNCPGGS+YS+LAIYDCMSWIKPKVGTVCFGV ASQAAIILAGGEKGMRYA
Sbjct: 155 EADILVSIYLNCPGGSLYSILAIYDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYA 214
Query: 193 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
MPNAR+M++QPQ GS G+VE+V+RQV E + +R
Sbjct: 215 MPNARVMIHQPQGGSEGNVEEVRRQVGETIYAR 247
>gi|218193030|gb|EEC75457.1| hypothetical protein OsI_12017 [Oryza sativa Indica Group]
gi|222625110|gb|EEE59242.1| hypothetical protein OsJ_11243 [Oryza sativa Japonica Group]
Length = 278
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/245 (54%), Positives = 160/245 (65%), Gaps = 34/245 (13%)
Query: 1 MVASAISASLSFSATSLNRTFASFFSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLK 60
M AIS L+ A+ S R S ALP P G+ K
Sbjct: 1 MAPMAISTPLALRASP-----TRLLSRRRSGAKSGVALPGP---------QFVPPGISSK 46
Query: 61 IDEKDFC-STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVA 119
+DE+ C S+ I++ +N+NPPLMPA+MTP G LDL++VL NRIIFIGQ INS VA
Sbjct: 47 LDERIHCHSSLRKNTIVASENENPPLMPAIMTPAGALDLATVLLGNRIIFIGQYINSQVA 106
Query: 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW------------------ 161
QR ISQLVTLA +DE+ADIL+YLNCPGGS+YS+LAIYDCMSW
Sbjct: 107 QRVISQLVTLAAVDEEADILIYLNCPGGSLYSILAIYDCMSWYILDMSICHAETVLIGFG 166
Query: 162 -IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
IKPKVGTVCFGV ASQAAIILAGGEKGMRYAMPNAR+M++QPQ S G+VE+V+RQV E
Sbjct: 167 LIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGVSEGNVEEVRRQVGE 226
Query: 221 AVISR 225
+ +R
Sbjct: 227 TIYAR 231
>gi|357473195|ref|XP_003606882.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|355507937|gb|AES89079.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
Length = 242
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 154/229 (67%), Gaps = 36/229 (15%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 58 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
LK+DEK V RNRIIFIGQP+NS
Sbjct: 60 RLKLDEKS--------------------------------THDVGTRNRIIFIGQPVNSQ 87
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 88 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 147
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
++LAGGEKGMRY+MPNARIM+NQPQ G GGHVEDV+R VNE+V SR+
Sbjct: 148 GTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRY 196
>gi|294460153|gb|ADE75659.1| unknown [Picea sitchensis]
Length = 254
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/151 (77%), Positives = 133/151 (88%)
Query: 75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
I + K NPP+ P +MTP GPLDL SVL R+R++FIGQPIN+ VAQR ISQL+TLA ID
Sbjct: 101 IRAAKKGNPPITPGIMTPAGPLDLMSVLLRSRVVFIGQPINAQVAQRVISQLMTLAAIDP 160
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
DADILMYLNCPGGSIYS+LAIYDCMSWIKPKVGTVCFGVAASQAA++LAGGEKGMRYAMP
Sbjct: 161 DADILMYLNCPGGSIYSILAIYDCMSWIKPKVGTVCFGVAASQAALLLAGGEKGMRYAMP 220
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
N+RIM++QPQ G GG++EDV RQVNE V SR
Sbjct: 221 NSRIMIHQPQGGCGGNIEDVWRQVNELVASR 251
>gi|388507152|gb|AFK41642.1| unknown [Medicago truncatula]
Length = 202
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/191 (64%), Positives = 142/191 (74%), Gaps = 4/191 (2%)
Query: 1 MVASAIS--ASLSFSATSLNRTFASF-FSNRNSSRSIVSALPSPYGDSSSGGLSIRNRGL 57
MV+ A+S A+ +F+ S R + FS+RN +I S+ SPYG SS GLS + G
Sbjct: 1 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPC-TIASSFHSPYGSSSQIGLSSKTHGF 59
Query: 58 PLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSM 117
LK+DEK S +I K NPP+ PA+MTPGG LDLSSVLFRNRIIFIGQP+NS
Sbjct: 60 RLKLDEKSTHDVGTSCGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQ 119
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VAQR ISQLVTLATID DADILMY+NCPGGS YSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 120 VAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 179
Query: 178 AAIILAGGEKG 188
++LAGG +G
Sbjct: 180 GTLLLAGGGEG 190
>gi|302771047|ref|XP_002968942.1| hypothetical protein SELMODRAFT_90346 [Selaginella moellendorffii]
gi|300163447|gb|EFJ30058.1| hypothetical protein SELMODRAFT_90346 [Selaginella moellendorffii]
Length = 195
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/147 (70%), Positives = 124/147 (84%)
Query: 79 KNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
K PP+ PAV+TP G DL+S++ R+RIIFIGQPINS VAQR ISQLV LA IDE+ DI
Sbjct: 2 KKGAPPMAPAVITPAGIADLTSIMLRSRIIFIGQPINSQVAQRVISQLVMLAAIDEEKDI 61
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+NCPGGS YSVLAIYDCMSWIKP+V TVCFG+AASQ A+ILAGG KG+R+AMPN+R+
Sbjct: 62 QLYINCPGGSTYSVLAIYDCMSWIKPRVSTVCFGMAASQGALILAGGTKGLRFAMPNSRV 121
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISR 225
M++QPQ G GG +EDV+RQVNE V SR
Sbjct: 122 MIHQPQGGCGGTMEDVRRQVNEVVASR 148
>gi|302816621|ref|XP_002989989.1| hypothetical protein SELMODRAFT_130729 [Selaginella moellendorffii]
gi|300142300|gb|EFJ09002.1| hypothetical protein SELMODRAFT_130729 [Selaginella moellendorffii]
Length = 203
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/151 (69%), Positives = 126/151 (83%)
Query: 75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
I + K P + PAV+TP G DL+S++ R+RIIFIGQPINS VAQR ISQLV LA IDE
Sbjct: 6 IRAAKKGAPLMAPAVITPAGIADLTSIMLRSRIIFIGQPINSQVAQRVISQLVMLAAIDE 65
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
+ DI +Y+NCPGGS YSVLAIYDCMSWIKP+VGTVCFG+AASQ A+ILAGG KG+R+AMP
Sbjct: 66 EKDIQLYINCPGGSTYSVLAIYDCMSWIKPRVGTVCFGMAASQGALILAGGTKGLRFAMP 125
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
N+R+M++QPQ G GG +EDV+RQVNE V SR
Sbjct: 126 NSRVMIHQPQGGCGGTMEDVRRQVNEVVASR 156
>gi|168050943|ref|XP_001777916.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670676|gb|EDQ57240.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 201
Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 97/154 (62%), Positives = 126/154 (81%)
Query: 72 SYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLAT 131
Y I + K PP+MPAV+TP GP+DLS+++FRNRIIF+G P+NS VAQ +S+L+TLA
Sbjct: 1 KYNIRAAKKGAPPMMPAVLTPSGPVDLSTLMFRNRIIFVGSPVNSEVAQSVVSKLLTLAA 60
Query: 132 IDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRY 191
I+++ +I MY+NCPGGS YS++AIYD M WIKP V TVCFG+AASQ A++LAGG+KG R+
Sbjct: 61 INDEEEIKMYINCPGGSTYSIMAIYDAMQWIKPDVSTVCFGIAASQGALLLAGGKKGKRF 120
Query: 192 AMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
AMPNARIM++QPQ G GG +DV+RQVNE + SR
Sbjct: 121 AMPNARIMIHQPQGGCGGTADDVRRQVNEVMSSR 154
>gi|168036513|ref|XP_001770751.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677969|gb|EDQ64433.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 195
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/147 (63%), Positives = 122/147 (82%)
Query: 79 KNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
K PP+MPAV+TP GP+DLS+++FRNRIIF+G +NS VAQ IS+L+TLA I+++ +I
Sbjct: 2 KKGAPPMMPAVLTPSGPVDLSTLMFRNRIIFVGSSVNSEVAQSVISKLLTLAAINDEEEI 61
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
MY+NCPGGS YS++AI+D M WIKP V TVCFG+AASQ A++LAGG+KG R+AMPNARI
Sbjct: 62 KMYINCPGGSTYSIMAIFDAMQWIKPDVSTVCFGIAASQGALLLAGGKKGKRFAMPNARI 121
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISR 225
M++QPQ G GG +DV+RQVNE + SR
Sbjct: 122 MIHQPQGGCGGTADDVRRQVNEVMSSR 148
>gi|317123029|ref|YP_004103032.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermaerobacter marianensis DSM 12885]
gi|315593009|gb|ADU52305.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermaerobacter marianensis DSM 12885]
Length = 199
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 94/140 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+FIG PI+ +VA I+QL+ L T D D DI +Y+N PGGS+ S LAIY
Sbjct: 19 DIYSRLLKDRIVFIGTPIDDVVANSVIAQLLFLQTDDPDRDISIYINSPGGSVDSGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M IKP V T C G+AAS AI+LAGG KG RYA+P++RIM++QP S GG DVK
Sbjct: 79 DTMQHIKPDVATYCVGLAASMGAILLAGGTKGKRYALPHSRIMIHQPHSQVGGTASDVKI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
++ + R V+ L HT
Sbjct: 139 YADQLLKLRQVANEILAKHT 158
>gi|410582587|ref|ZP_11319693.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermaerobacter subterraneus DSM 13965]
gi|410505407|gb|EKP94916.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermaerobacter subterraneus DSM 13965]
Length = 199
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 94/140 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+FIG PI+ +VA I+QL+ L T D D DI +Y+N PGGS+ S LAIY
Sbjct: 19 DIYSRLLKDRIVFIGTPIDDVVANSVIAQLLFLQTDDPDRDISIYINSPGGSVDSGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M IKP V T C G+AAS AI+LAGG KG RYA+P++RIM++QP S GG DVK
Sbjct: 79 DTMQHIKPDVATYCVGLAASMGAILLAGGTKGKRYALPHSRIMIHQPHSQVGGTAADVKI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
++ + R V+ L HT
Sbjct: 139 YADQLLKLRQVANEILAKHT 158
>gi|385810287|ref|YP_005846683.1| ATP-dependent Clp protease catalytic subunit [Ignavibacterium album
JCM 16511]
gi|383802335|gb|AFH49415.1| ATP-dependent Clp protease catalytic subunit [Ignavibacterium album
JCM 16511]
Length = 206
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 102/157 (64%), Gaps = 5/157 (3%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G +D+ S L R RI+FIG PI+ +A I+QL+ L D + DI +
Sbjct: 11 LVPYVIEQTGRGERGMDIYSRLLRERIVFIGTPIDDHIASLTIAQLIFLEAEDPEKDIHI 70
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS AA++LAGG KG R+A+P+++I++
Sbjct: 71 YINSPGGSVTAGLAIYDTMRFIKPDVSTICVGMAASMAAVLLAGGTKGKRFALPHSKILI 130
Query: 201 NQPQS-GSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP + G GG V DV+ E + +R + L HT
Sbjct: 131 HQPWTQGIGGQVTDVEIHAKEMLKTRETLYNILAEHT 167
>gi|298243590|ref|ZP_06967397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ktedonobacter
racemifer DSM 44963]
gi|297556644|gb|EFH90508.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ktedonobacter
racemifer DSM 44963]
Length = 218
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++PAV+ TP G DL S L + RIIF+G PI+ VA ++QL+ L + D DI M
Sbjct: 25 IIPAVVESTPRGERSWDLYSRLLKERIIFVGTPIDDQVANSVVAQLLYLQSEDATKDIQM 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG IY+ LAIYD M W++P V T C G+A S A+ILA G+KG RY +PN+ +++
Sbjct: 85 YINSPGGVIYAGLAIYDTMQWLRPDVSTFCMGMAMSMGAVILAAGQKGKRYTLPNSTVLI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ E + R L HT
Sbjct: 145 HQPLGGAEGQAADIEITAREILRLRRNLYEILAKHT 180
>gi|255994401|ref|ZP_05427536.1| Clp protease [Eubacterium saphenum ATCC 49989]
gi|255993114|gb|EEU03203.1| Clp protease [Eubacterium saphenum ATCC 49989]
Length = 196
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L P V+ G D+ S L R+RIIFIG+PI S +A I+QL+ L D DI +
Sbjct: 3 LTPIVIEKDGSGERSFDIYSRLLRDRIIFIGEPIESNMASSIIAQLLFLEAEDSSKDICI 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S LAIYD M +IKP+V TVC G+AAS AA++L GEKG R+A+PN+ IM+
Sbjct: 63 YINSPGGDVTSGLAIYDTMQFIKPQVQTVCVGMAASMAAVLLLAGEKGKRFALPNSEIMI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G ++K + +R + HT
Sbjct: 123 HQPMGGASGQASEIKIAAEHIIKTRDKLNRLISKHT 158
>gi|302390303|ref|YP_003826124.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermosediminibacter oceani DSM 16646]
gi|302200931|gb|ADL08501.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermosediminibacter oceani DSM 16646]
Length = 200
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 91/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+FIG PI+ +A I+QL+ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIVFIGTPIDDSIASLVIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A++LAGG G R A+PN+RIM++QP G G D++
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAVLLAGGAPGKRLALPNSRIMIHQPWGGVQGRALDIET 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R V L+ HT
Sbjct: 139 HAKEILRLREVLNEILVKHT 158
>gi|335038541|ref|ZP_08531774.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
gi|334181561|gb|EGL84093.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
Length = 196
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 91/136 (66%), Gaps = 4/136 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ D+ S L ++RIIF+G PI+ VA ++QL+ LA D + DI
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPIDDQVANAVVAQLLFLAAEDPEKDIS 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGSI + +AIYD M +IKPKV T+C G+AAS A +LA GEKG R+A+PN+ +M
Sbjct: 62 LYINSPGGSITAGMAIYDTMQYIKPKVSTICIGLAASMGAFLLAAGEKGKRFALPNSEVM 121
Query: 200 LNQPQSGSGGHVEDVK 215
++QP G+ G D++
Sbjct: 122 IHQPLGGTQGQASDIE 137
>gi|313894919|ref|ZP_07828479.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 137 str. F0430]
gi|402301976|ref|ZP_10821097.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC9]
gi|312976600|gb|EFR42055.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 137 str. F0430]
gi|400381261|gb|EJP34064.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC9]
Length = 205
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 217 QVNEAVISRHVSLSFLLLHTLNDS 240
Q E + R V L HT D+
Sbjct: 140 QAKEILRLREVGNEILARHTGQDT 163
>gi|320530213|ref|ZP_08031283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
artemidis F0399]
gi|320137646|gb|EFW29558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
artemidis F0399]
Length = 199
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKERIIFLGGPIDDNVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 133
Query: 217 QVNEAVISRHVSLSFLLLHTLNDS 240
Q E + R V L HT D+
Sbjct: 134 QAKEILRLREVGNEILARHTGQDT 157
>gi|443320140|ref|ZP_21049261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gloeocapsa
sp. PCC 73106]
gi|442790136|gb|ELR99748.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gloeocapsa
sp. PCC 73106]
Length = 233
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 68 STEHSYK--IISGKNDN--PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVA 119
ST+ YK I S KND ++P V+ G D+ S L R RIIFIG PI+ +A
Sbjct: 10 STQSHYKPEIQSVKNDPTIKNIVPMVLEQSGLGERAFDIYSRLLRERIIFIGTPIDDTLA 69
Query: 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 179
+QL+ L D + DI +Y+N PGGS+Y+ +AIYD M + P V T+C+G+AAS A
Sbjct: 70 NSVTAQLLFLEAEDSEKDIQIYINSPGGSVYAGMAIYDTMRQVAPDVATICYGIAASMGA 129
Query: 180 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+L+GG G R A+PNAR+M++QP G+ G D++ Q E + + L HT
Sbjct: 130 FLLSGGTNGKRMALPNARMMIHQPLGGAQGQASDIQIQAREILYIKKRLNQLLAEHT 186
>gi|292670226|ref|ZP_06603652.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
ATCC 43541]
gi|292648178|gb|EFF66150.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
ATCC 43541]
Length = 197
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 90/144 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 133
Query: 217 QVNEAVISRHVSLSFLLLHTLNDS 240
Q E + R V L HT D
Sbjct: 134 QAKEILRLREVGNHILARHTGQDE 157
>gi|121534156|ref|ZP_01665981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
carboxydivorans Nor1]
gi|121307259|gb|EAX48176.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
carboxydivorans Nor1]
Length = 203
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+FIG PI+ VA I+QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIVFIGGPIDDHVANLVIAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS AA++LA G G RYA+P AR+M++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICLGSAASMAAVLLAAGAPGKRYALPYARVMIHQPLGGAQGQATDIQI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + L HT
Sbjct: 139 QAREILRLREILNDILARHT 158
>gi|238926240|ref|ZP_04658000.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
gi|238885920|gb|EEQ49558.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
Length = 197
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 133
Query: 217 QVNEAVISRHVSLSFLLLHTLNDS 240
Q E + R V L HT D+
Sbjct: 134 QAKEILRLREVGNEILARHTGQDT 157
>gi|332798601|ref|YP_004460100.1| ATP-dependent Clp protease proteolytic subunit [Tepidanaerobacter
acetatoxydans Re1]
gi|438001582|ref|YP_007271325.1| ATP-dependent Clp protease proteolytic subunit [Tepidanaerobacter
acetatoxydans Re1]
gi|332696336|gb|AEE90793.1| ATP-dependent Clp protease proteolytic subunit [Tepidanaerobacter
acetatoxydans Re1]
gi|432178376|emb|CCP25349.1| ATP-dependent Clp protease proteolytic subunit [Tepidanaerobacter
acetatoxydans Re1]
Length = 194
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFIG I+ VA AI+Q++ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFIGTSIDDTVASLAIAQMLYLESEDPDKDIRLYINSPGGSVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A++LA G +G RYA+PN+RIM++QP G G D++
Sbjct: 79 DTMQYIKPDVSTICMGLAASMGAVLLAAGTEGKRYALPNSRIMIHQPWGGVQGKAVDIET 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R + L HT
Sbjct: 139 HAKEILRLRELLNEILANHT 158
>gi|304437034|ref|ZP_07396997.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304369985|gb|EFM23647.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 203
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 217 QVNEAVISRHVSLSFLLLHTLNDS 240
Q E + R V L HT D+
Sbjct: 140 QAKEILRLREVGNEILAHHTGQDT 163
>gi|255658239|ref|ZP_05403648.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
multacida DSM 20544]
gi|260849549|gb|EEX69556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mitsuokella
multacida DSM 20544]
Length = 199
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 90/143 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKDRIIFLGGPIDDAVANTVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG RYA+PNARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICIGQAASMGALLLTAGAKGKRYALPNARIMIHQPLGGAQGQSTDIQI 133
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E R V L+ T D
Sbjct: 134 QAREIQRIREVINDILVESTGKD 156
>gi|338811972|ref|ZP_08624171.1| ATP-dependent Clp protease proteolytic subunit [Acetonema longum
DSM 6540]
gi|337275941|gb|EGO64379.1| ATP-dependent Clp protease proteolytic subunit [Acetonema longum
DSM 6540]
Length = 202
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+FIG PI+ +A I+QL+ L + D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIVFIGGPIDDTMANLVIAQLLFLESEDPEKDIHLYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS AAI+L G KG RYA+P AR+M++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICLGLAASMAAILLTAGAKGKRYALPYARVMIHQPHGGAQGQATDIEI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R + L H+
Sbjct: 139 HAREILRLREIGADILARHS 158
>gi|239618479|ref|YP_002941801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
olearia TBF 19.5.1]
gi|239507310|gb|ACR80797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kosmotoga
olearia TBF 19.5.1]
Length = 206
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 84 PLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
P++P V+ G D+ + L RIIF+G P++ ++ ++QL+ L + D D DI
Sbjct: 7 PVVPYVVENKGRGERIYDIFTKLLSERIIFLGWPLDDEISNIVVAQLLFLESQDPDKDIS 66
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGS+ S LAIYD M +IKP V T+C G+AAS AA+ILAGG KG R+A+P++RIM
Sbjct: 67 IYINSPGGSVTSGLAIYDTMQYIKPDVSTICIGMAASMAAVILAGGSKGKRFALPHSRIM 126
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G +D++ + E + R L HT
Sbjct: 127 IHQPWGGAEGTAKDIEIRTRELLFIRDQINEILSHHT 163
>gi|428201398|ref|YP_007079987.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pleurocapsa
sp. PCC 7327]
gi|427978830|gb|AFY76430.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pleurocapsa
sp. PCC 7327]
Length = 272
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 4/161 (2%)
Query: 80 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 135
ND ++P V+ G D+ S L R RI+F+G PI+ VA ++QL+ L D +
Sbjct: 64 NDIENVIPMVVEQSGLGERAFDIYSRLLRERIVFLGTPIDDKVADSIVAQLLYLDAEDPE 123
Query: 136 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 195
DI +Y+N PGGS+Y+ AIYD M ++P V T+CFG+AAS A +L+GG KG R A+P+
Sbjct: 124 KDIQLYINSPGGSVYAGFAIYDAMQQVRPDVVTICFGLAASMGAFLLSGGAKGKRMALPS 183
Query: 196 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
AR+M++QP G+ G +++ Q E + + L +HT
Sbjct: 184 ARLMIHQPIGGAQGQAVEIEIQAREILYMKQRLNELLAIHT 224
>gi|407472866|ref|YP_006787266.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
acidurici 9a]
gi|407049374|gb|AFS77419.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
acidurici 9a]
Length = 194
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIFI IN + A ++QL+ L + D D DI M
Sbjct: 3 LVPVVVEQTGRGERSYDIYSRLLKDRIIFISDEINDVTASLVVAQLLFLESEDPDKDIQM 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI S AIYD M +IKP V T C G+AAS A +LA G KG R+A+PNA +M+
Sbjct: 63 YINSPGGSITSGFAIYDTMQYIKPDVSTTCIGMAASMGAFLLAAGAKGKRFALPNAEVMI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G ED+K + +R
Sbjct: 123 HQPLGGTRGQAEDIKIHAERIIKTRE 148
>gi|21674371|ref|NP_662436.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
tepidum TLS]
gi|25008303|sp|Q8KC73.1|CLPP_CHLTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|21647550|gb|AAM72778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
tepidum TLS]
Length = 225
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG +N L+P V+ G D+ S L R RIIF+G PI+
Sbjct: 5 NFGFDHHAKKLYSGAIENSINSQLVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA I+QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P + TVC G+AAS
Sbjct: 65 VAGLIIAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
A +LA G G R ++P++RIM++QP G+ G D+ Q E RH+ L HT
Sbjct: 125 GAFLLASGTSGKRASLPHSRIMIHQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHT 183
>gi|443660052|ref|ZP_21132510.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa DIANCHI905]
gi|159030460|emb|CAO91362.1| clpP2 [Microcystis aeruginosa PCC 7806]
gi|443332568|gb|ELS47168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa DIANCHI905]
Length = 233
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 77 SGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATI 132
+G+N ++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L
Sbjct: 23 TGRNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAE 82
Query: 133 DEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 192
D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L GG G R +
Sbjct: 83 DPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMS 142
Query: 193 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+P++RIM++QP G+ G D+ Q E + + + L HT
Sbjct: 143 LPSSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHT 186
>gi|425445342|ref|ZP_18825374.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9443]
gi|425453823|ref|ZP_18833576.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9807]
gi|389734665|emb|CCI01691.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9443]
gi|389800128|emb|CCI20438.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9807]
Length = 233
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 77 SGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATI 132
+G+N ++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L
Sbjct: 23 TGRNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAE 82
Query: 133 DEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 192
D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L GG G R +
Sbjct: 83 DPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPHVATICFGLAASMGAFLLCGGAAGKRMS 142
Query: 193 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+P++RIM++QP G+ G D+ Q E + + + L HT
Sbjct: 143 LPSSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHT 186
>gi|166369013|ref|YP_001661286.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
aeruginosa NIES-843]
gi|390442513|ref|ZP_10230504.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis sp. T1-4]
gi|422303000|ref|ZP_16390356.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9806]
gi|425435289|ref|ZP_18815746.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9432]
gi|425439908|ref|ZP_18820220.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9717]
gi|425452211|ref|ZP_18832029.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 7941]
gi|425458445|ref|ZP_18837933.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9808]
gi|425472440|ref|ZP_18851281.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9701]
gi|440754784|ref|ZP_20933986.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa TAIHU98]
gi|166091386|dbj|BAG06094.1| ATP-dependent Clp protease proteolytic subunit 2 [Microcystis
aeruginosa NIES-843]
gi|389680218|emb|CCH91098.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9432]
gi|389719747|emb|CCH96448.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9717]
gi|389766108|emb|CCI08183.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 7941]
gi|389792060|emb|CCI12154.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9806]
gi|389822691|emb|CCI29606.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9808]
gi|389834168|emb|CCI34630.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis sp. T1-4]
gi|389881467|emb|CCI37973.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9701]
gi|440174990|gb|ELP54359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa TAIHU98]
Length = 233
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 77 SGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATI 132
+G+N ++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L
Sbjct: 23 TGRNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAE 82
Query: 133 DEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 192
D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L GG G R +
Sbjct: 83 DPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMS 142
Query: 193 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+P++RIM++QP G+ G D+ Q E + + + L HT
Sbjct: 143 LPSSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHT 186
>gi|425465976|ref|ZP_18845279.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9809]
gi|389831694|emb|CCI25350.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9809]
Length = 233
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 77 SGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATI 132
+G+N ++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L
Sbjct: 23 TGRNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAE 82
Query: 133 DEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYA 192
D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L GG G R +
Sbjct: 83 DPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMS 142
Query: 193 MPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+P++RIM++QP G+ G D+ Q E + + + L HT
Sbjct: 143 LPSSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHT 186
>gi|123967079|ref|YP_001012160.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9515]
gi|123201445|gb|ABM73053.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9515]
Length = 204
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 94/161 (58%), Gaps = 4/161 (2%)
Query: 80 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 135
N+ +P V+ G D+ S L R RIIF+G IN V ++QL+ L D D
Sbjct: 8 NNTKSAIPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVTDSLVAQLLFLEAEDPD 67
Query: 136 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 195
DI +Y+N PGGS+ + LAIYD M I P V T+CFGVAAS A +L+GG KG R A+PN
Sbjct: 68 KDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPN 127
Query: 196 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+RIM++QP G+ G +++ Q E + + S L HT
Sbjct: 128 SRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLSEHT 168
>gi|428307443|ref|YP_007144268.1| ATP-dependent Clp protease proteolytic subunit [Crinalium
epipsammum PCC 9333]
gi|428248978|gb|AFZ14758.1| ATP-dependent Clp protease proteolytic subunit [Crinalium
epipsammum PCC 9333]
Length = 228
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G P++ VA ++QL+ L + D + DI +
Sbjct: 25 VIPMVVEQTGLGERAFDIYSRLLRERIIFMGTPVDDTVADSLVAQLLFLESEDPEKDIQL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM+
Sbjct: 85 YINSPGGSVTAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMALPSSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + V L HT
Sbjct: 145 HQPLGGAQGQAVDIEIQAKEILYHKRVLNELLAEHT 180
>gi|206901598|ref|YP_002250810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
thermophilum H-6-12]
gi|206740701|gb|ACI19759.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
thermophilum H-6-12]
Length = 194
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RI+F+G IN VA ++QL+ L + D + DI +
Sbjct: 2 LVPIVIEQTPRGERAYDIYSRLLKSRIVFLGTAINDEVANLVVAQLLFLESEDPEKDIYL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + LAIYD M IKPKV TVC G AAS AAI+LA G+KG RYA+P++R+M+
Sbjct: 62 YINSPGGEVSAGLAIYDTMRHIKPKVATVCVGQAASMAAILLAAGDKGKRYALPHSRVMI 121
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ E + + V L HT
Sbjct: 122 HQPLGGAYGPAADIEIHTREILKIKRVLNEILAHHT 157
>gi|427405940|ref|ZP_18896145.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
F0473]
gi|425708781|gb|EKU71820.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
F0473]
Length = 206
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA I+Q++ L + D D DI +Y+N PGG + + LA+Y
Sbjct: 20 DIYSRLLKERIIFLGGPIDDNVANVVIAQMLFLESEDPDKDIHLYINSPGGVVTAGLAMY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A+I+LA G G RYA+P ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMASILLAAGAPGKRYALPQARIMIHQPSGGAQGQSTDIQI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + L HT
Sbjct: 140 QAKEILRLRETANEILAKHT 159
>gi|429737530|ref|ZP_19271388.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 138 str. F0429]
gi|429152336|gb|EKX95166.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 138 str. F0429]
Length = 197
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 14 DIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 73
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G G RYA+P+ARIM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIHQPLGGAQGQSTDIQI 133
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + R V + L HT D
Sbjct: 134 QAKEILRLREVGNNILARHTGQD 156
>gi|401565794|ref|ZP_10806612.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC6]
gi|400185000|gb|EJO19235.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC6]
Length = 203
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G G RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + R V + L HT D
Sbjct: 140 QAKEILRLREVGNNILARHTGQD 162
>gi|357013904|ref|ZP_09078903.1| ClpP1 [Paenibacillus elgii B69]
Length = 193
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 89/135 (65%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
+P V+ P D+ S L ++RIIF+G PIN +VA I+Q++ LA D D DI +
Sbjct: 3 FIPMVVEPDARGERAYDIYSRLLKDRIIFLGSPINDVVANSIIAQMLFLAATDPDKDISV 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI S +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M+
Sbjct: 63 YINSPGGSITSGMAIYDTMQFIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEVMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G D++
Sbjct: 123 HQPLGGAEGQASDIE 137
>gi|428774108|ref|YP_007165896.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
stanieri PCC 7202]
gi|428688387|gb|AFZ48247.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
stanieri PCC 7202]
Length = 238
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 87/141 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+G I+ +A ++QL+ L D DI +Y+N PGGS+YS +AI
Sbjct: 46 FDVYSRLLRERIIFLGTAIDDKLADSVVAQLLYLEAEDPKKDIYIYINSPGGSVYSGMAI 105
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C+G+AAS A +LAGG KG R +PN+RIM++QP G+ G D++
Sbjct: 106 YDTMQQIEPDVSTICYGIAASMGAFLLAGGAKGKRLGLPNSRIMIHQPLGGAQGQASDIE 165
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 166 IQAKEILYIKQRLNEILTHHT 186
>gi|334128684|ref|ZP_08502565.1| ATP-dependent Clp protease, protease subunit [Centipeda periodontii
DSM 2778]
gi|333386421|gb|EGK57635.1| ATP-dependent Clp protease, protease subunit [Centipeda periodontii
DSM 2778]
Length = 203
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G G RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + R V + L HT D
Sbjct: 140 QAKEILRLREVGNNILARHTGQD 162
>gi|408417896|ref|YP_006759310.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfobacula
toluolica Tol2]
gi|405105109|emb|CCK78606.1| ClpP: ATP-dependent Clp protease, proteolytic subunit
[Desulfobacula toluolica Tol2]
Length = 207
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 4/160 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ D+ S L ++RIIFIG I+ +A ++Q + L + D + DI
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFIGSAIDDEIANLIVAQFLFLESEDPEKDIS 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
Y+N PGG + + +AIYD M +IKP V TVC G AAS A++L G KG R+A+PN+RIM
Sbjct: 62 FYINSPGGVVTAGMAIYDTMQYIKPDVATVCIGQAASMGALLLTAGTKGKRFALPNSRIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
++QP G+ G D+K Q NE + + + L HT D
Sbjct: 122 IHQPLGGTQGQATDIKIQANEILRMKDILNEILSTHTGQD 161
>gi|385208255|ref|ZP_10035123.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. Ch1-1]
gi|385180593|gb|EIF29869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. Ch1-1]
Length = 215
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 72 SYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
SY I+G L+P V+ G D+ S L R RI+F+ P+N A ++QL+
Sbjct: 4 SYPTITGLG----LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLL 59
Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
L + + D DI Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++
Sbjct: 60 FLESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQR 119
Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
G RYA+PNARIM++QP GS G DV+ Q E + R
Sbjct: 120 GKRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRE 158
>gi|357059570|ref|ZP_09120412.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas infelix
ATCC 43532]
gi|355371647|gb|EHG18991.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas infelix
ATCC 43532]
Length = 203
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G G RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + R V + L HT D
Sbjct: 140 QAKEILRLREVGNNILAHHTGQD 162
>gi|153006264|ref|YP_001380589.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter sp. Fw109-5]
gi|166201797|sp|A7HFV9.1|CLPP_ANADF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|152029837|gb|ABS27605.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter sp. Fw109-5]
Length = 204
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 84/124 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPGGSVTSGLAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++QP G G D+
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQGQATDIDI 140
Query: 217 QVNE 220
Q E
Sbjct: 141 QARE 144
>gi|389843764|ref|YP_006345844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesotoga
prima MesG1.Ag.4.2]
gi|387858510|gb|AFK06601.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesotoga
prima MesG1.Ag.4.2]
Length = 205
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 4/157 (2%)
Query: 84 PLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
P +P V+ G D+ + L RI+F+G PI+ V+ ++QL+ L + D + DI
Sbjct: 7 PFVPYVVEDRGRGERIFDIYTKLLSERIVFLGWPIDDEVSNIVVAQLLFLESQDPEKDIN 66
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGSI S LAIYD M +IKP + T+C G+AAS AI+LAGG KG R+A+PN+R+M
Sbjct: 67 LYINSPGGSITSGLAIYDTMQYIKPDISTICIGMAASMGAILLAGGTKGKRFALPNSRVM 126
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G +D++ + E + R L HT
Sbjct: 127 IHQPFGGAEGVAKDIEIRAREILYLRDELNKILAKHT 163
>gi|337286231|ref|YP_004625704.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfatator indicus DSM 15286]
gi|335359059|gb|AEH44740.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfatator indicus DSM 15286]
Length = 202
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 88/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R RI+FIG PI+ +A I+QL+ L D D DI +Y+N PGG + S LAIY
Sbjct: 18 DIYSRLLRERIVFIGAPIDDHLANLVIAQLLFLEAEDPDRDITLYINSPGGIVTSGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP + T+C G AAS AA++LAGG KG RYA+P++RIML+QP G DV
Sbjct: 78 DTMQYIKPDICTLCLGQAASMAAVLLAGGTKGKRYALPHSRIMLHQPIGSFQGQATDVDI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + L HT
Sbjct: 138 QAREILRLRAMLNEILANHT 157
>gi|91785004|ref|YP_560210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
xenovorans LB400]
gi|116243097|sp|Q13UT1.1|CLPP1_BURXL RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|91688958|gb|ABE32158.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
xenovorans LB400]
Length = 215
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 72 SYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
SY I+G L+P V+ G D+ S L R RI+F+ P+N A ++QL+
Sbjct: 4 SYPTITGLG----LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLL 59
Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
L + + D DI Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++
Sbjct: 60 FLESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQR 119
Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
G RYA+PNARIM++QP GS G DV+ Q E + R
Sbjct: 120 GKRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRE 158
>gi|367470105|ref|ZP_09469823.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
gi|365814809|gb|EHN09989.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
Length = 188
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 88/130 (67%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L RIIF+G P++ +A ++QL+ LA+ DED DI +Y+N PGGS+Y+ LAI
Sbjct: 13 FDIYSRLLNERIIFLGTPVDDQIANLIVAQLLHLASDDEDKDISLYINSPGGSVYAGLAI 72
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP+V T+C G+A S A+ILAGG KG R ++PN++I+++Q SG G DV+
Sbjct: 73 YDTMQFIKPQVRTICVGIAMSMGAVILAGGAKGKRMSLPNSKILIHQVSSGFQGQATDVE 132
Query: 216 RQVNEAVISR 225
E + R
Sbjct: 133 IHAKEIIDLR 142
>gi|218289882|ref|ZP_03494072.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius LAA1]
gi|258511244|ref|YP_003184678.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|384134931|ref|YP_005517645.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|218240022|gb|EED07208.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius LAA1]
gi|257477970|gb|ACV58289.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|339289016|gb|AEJ43126.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 192
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 89/131 (67%), Gaps = 6/131 (4%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA ++QL+ LA D D DI MY+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGTPIDDDVANAVVAQLLFLAADDPDKDIQMYINSPGGSVSAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M IKP V T+C G+AAS AA++LA G KG RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTMCVGMAASMAAVLLAAGAKGKRYALPNSEVMIHQPLGGARGQASDIE- 137
Query: 217 QVNEAVISRHV 227
+ +RH+
Sbjct: 138 -----IHARHI 143
>gi|116747551|ref|YP_844238.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Syntrophobacter fumaroxidans MPOB]
gi|166214718|sp|A0LEF1.1|CLPP_SYNFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|116696615|gb|ABK15803.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Syntrophobacter fumaroxidans MPOB]
Length = 202
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 87/141 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R+RIIF+G I VA I+QL+ L + D D DI Y+N PGG + + LAI
Sbjct: 18 FDIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPGGLVTAGLAI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G AAS AAI+LA G KG RYA+P+ RIML+QP G G DV+
Sbjct: 78 YDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGFQGQATDVE 137
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + R L+ HT
Sbjct: 138 IQAKEILKLREELNDILVRHT 158
>gi|428780533|ref|YP_007172319.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dactylococcopsis salina PCC 8305]
gi|428694812|gb|AFZ50962.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dactylococcopsis salina PCC 8305]
Length = 217
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G DL S L R RI+F+GQ ++ +A +Q++ L D + DI +
Sbjct: 20 VVPMVVEQSGMGERAFDLYSRLLRERIVFLGQQVDDQIADSIAAQMLFLEAEDPEKDIQL 79
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD M I+P V T+C+G+AAS A +LAGG +G R ++PN+RIM+
Sbjct: 80 YINSPGGSVYAGMAIYDTMQQIQPDVATICYGIAASMGAFLLAGGAEGKRMSLPNSRIMI 139
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + ++ L HT
Sbjct: 140 HQPLGGAQGQAADIEIQAREILYIKNTLNELLAHHT 175
>gi|422344962|ref|ZP_16425885.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
F0398]
gi|355376104|gb|EHG23365.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
F0398]
Length = 203
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 89/144 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L G K RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGSILLTAGAKAKRYALPHARIMIHQPLGGAQGQSTDIQI 139
Query: 217 QVNEAVISRHVSLSFLLLHTLNDS 240
Q E + R V L HT D
Sbjct: 140 QAKEILRLREVGNHILARHTGQDE 163
>gi|187925164|ref|YP_001896806.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
phytofirmans PsJN]
gi|187716358|gb|ACD17582.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phytofirmans PsJN]
Length = 215
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDICF 72
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARIMI 132
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP GS G DV+ Q E + R
Sbjct: 133 HQPSGGSQGTAADVEIQAKEVLYLRE 158
>gi|284929120|ref|YP_003421642.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
UCYN-A]
gi|284809579|gb|ADB95284.1| ATP-dependent Clp protease proteolytic subunit ClpP [cyanobacterium
UCYN-A]
Length = 214
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 103/175 (58%), Gaps = 9/175 (5%)
Query: 66 FCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQR 121
F H Y K +N ++P V+ G D+ S L R RIIF+G P++ +A
Sbjct: 12 FSKESHQY---YAKMEN--IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQMANS 66
Query: 122 AISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 181
++QL+ L + D + DI +Y+N PGGS+Y+ LAIYD M I+P + T+CFG+AAS A +
Sbjct: 67 IVAQLLYLDSEDPEKDIQLYINSPGGSVYAGLAIYDTMKQIRPDIVTICFGLAASMGAFL 126
Query: 182 LAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
L+GG KG R A+P++RIM++QP G+ G D+ Q E + + + L HT
Sbjct: 127 LSGGTKGKRMALPSSRIMIHQPLGGAQGQAVDIAIQAQEILYIKKRLNNMLSEHT 181
>gi|223947307|gb|ACN27737.1| unknown [Zea mays]
gi|413948196|gb|AFW80845.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 310
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 86/130 (66%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
LD +++L R RI+F+G P++ A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 72 LDTTNMLLRQRIVFLGSPVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGV 131
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M + K V TVCFG+AAS A +LA G KG RY MPNARIM++QP G+GG V ++
Sbjct: 132 YDAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARIMIHQPSGGAGGKVTEMG 191
Query: 216 RQVNEAVISR 225
Q+ E + +
Sbjct: 192 LQIREMMYEK 201
>gi|428771131|ref|YP_007162921.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
aponinum PCC 10605]
gi|428685410|gb|AFZ54877.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
aponinum PCC 10605]
Length = 239
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 89/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+G I+ +A ++QL+ L D + DI +Y+N PGGS+Y+ +AI
Sbjct: 47 FDIYSRLLRERIIFLGTAIDDKLADSIVAQLLYLEADDPEKDIYIYINSPGGSVYAGMAI 106
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M IKP V T+C+G+AAS A +L+GG KG R +PN+RIM++QP G+ G D++
Sbjct: 107 YDTMQQIKPDVSTICYGIAASMGAFLLSGGAKGKRLGLPNSRIMIHQPLGGAQGQASDIE 166
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + ++ L HT
Sbjct: 167 IQAKEILYIKNKLNQLLADHT 187
>gi|193212075|ref|YP_001998028.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobaculum
parvum NCIB 8327]
gi|193085552|gb|ACF10828.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobaculum
parvum NCIB 8327]
Length = 225
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG +N L+P V+ G D+ S L R RIIF+G PI+
Sbjct: 5 NFGFNHHAKKLYSGAIENSINNQLVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P + TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
A +LA G G R ++P++RIM++QP G+ G D+ Q E RH+ L HT
Sbjct: 125 GAFLLASGTAGKRASLPHSRIMIHQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHT 183
>gi|16332068|ref|NP_442796.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|451816220|ref|YP_007452672.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|2493737|sp|Q59993.1|CLPP2_SYNY3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|1001377|dbj|BAA10867.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|407960292|dbj|BAM53532.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|451782189|gb|AGF53158.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
Length = 226
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 4/163 (2%)
Query: 78 GKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 133
G N+ ++P V+ G D+ S L R RIIF+G P++ VA ++QL+ L D
Sbjct: 16 GGNNIQSVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAED 75
Query: 134 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 193
+ DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L+GG KG R A+
Sbjct: 76 PEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMAL 135
Query: 194 PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
P++RIM++QP G+ G +++ Q E + + + L+ HT
Sbjct: 136 PSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHT 178
>gi|217967475|ref|YP_002352981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
turgidum DSM 6724]
gi|217336574|gb|ACK42367.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dictyoglomus
turgidum DSM 6724]
Length = 194
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 99/156 (63%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RI+F+G IN VA ++QL+ L + D + DI +
Sbjct: 2 LVPIVIEQTPRGERAYDIYSRLLKSRIVFLGTTINDEVANLIVAQLLFLESEDPEKDIYL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + LAIYD + IKPKV TVC G AAS AAI+LA G+KG RYA+P++R+M+
Sbjct: 62 YINSPGGEVSAGLAIYDTIRHIKPKVATVCVGQAASMAAILLAAGDKGKRYALPHSRVMI 121
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ E + + V L HT
Sbjct: 122 HQPLGGAYGPAADIEIHTREILKIKRVLNEILAYHT 157
>gi|56201842|dbj|BAD73292.1| putative ATP-dependent Clp protease, proteolytic subunit [Oryza
sativa Japonica Group]
gi|125526129|gb|EAY74243.1| hypothetical protein OsI_02123 [Oryza sativa Indica Group]
gi|125570557|gb|EAZ12072.1| hypothetical protein OsJ_01953 [Oryza sativa Japonica Group]
Length = 308
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 87/130 (66%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
LD +++L R RI+F+G P++ M A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 70 LDTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGV 129
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M + K + TVCFG+AAS A +LA G KG R+ MPNARIM++QP G+GG V ++
Sbjct: 130 YDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMG 189
Query: 216 RQVNEAVISR 225
Q+ E + +
Sbjct: 190 LQIREMMYEK 199
>gi|357132254|ref|XP_003567746.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 3,
chloroplastic-like [Brachypodium distachyon]
Length = 309
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 86/130 (66%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
LD S++L R RIIF+G P++ M A ISQL+ L D+ DI +++N PGGSI + + I
Sbjct: 71 LDTSNMLLRQRIIFLGSPVDDMSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGI 130
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M + K + TVCFG+AAS A +LA G KG R+ MPNAR+M++QP G+GG ++
Sbjct: 131 YDAMKFCKSDISTVCFGLAASMGAFLLASGTKGKRFCMPNARVMIHQPSGGAGGKATEMG 190
Query: 216 RQVNEAVISR 225
Q+ E + +
Sbjct: 191 LQIREMLYEK 200
>gi|331001370|ref|ZP_08324994.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Parasutterella excrementihominis YIT 11859]
gi|329568629|gb|EGG50431.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Parasutterella excrementihominis YIT 11859]
Length = 209
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 4/161 (2%)
Query: 80 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 135
N N L+P V+ G D+ S L R+R++F+ P+ A ++QL+ L + + D
Sbjct: 6 NFNSALIPMVIEQSGRGERSFDIYSRLLRDRVVFLVGPVTDQSANLVVAQLLFLESENPD 65
Query: 136 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 195
DI +Y++ PGGS+Y+ L+IYD M +IKP V T+C G+AAS A +LA G KG R+A+PN
Sbjct: 66 KDISLYIDSPGGSVYAGLSIYDTMQFIKPDVSTICLGMAASMGAFLLAAGAKGKRFALPN 125
Query: 196 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+RIM++QP G+ G D++ Q E + R + L HT
Sbjct: 126 SRIMIHQPSGGTNGTAADIEIQAKEILELRSRLNTILSEHT 166
>gi|115436866|ref|NP_001043155.1| Os01g0507900 [Oryza sativa Japonica Group]
gi|113532686|dbj|BAF05069.1| Os01g0507900 [Oryza sativa Japonica Group]
gi|215734851|dbj|BAG95573.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 314
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 87/130 (66%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
LD +++L R RI+F+G P++ M A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 76 LDTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGV 135
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M + K + TVCFG+AAS A +LA G KG R+ MPNARIM++QP G+GG V ++
Sbjct: 136 YDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMG 195
Query: 216 RQVNEAVISR 225
Q+ E + +
Sbjct: 196 LQIREMMYEK 205
>gi|303257392|ref|ZP_07343405.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Burkholderiales bacterium 1_1_47]
gi|302859749|gb|EFL82827.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Burkholderiales bacterium 1_1_47]
Length = 209
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 4/161 (2%)
Query: 80 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 135
N N L+P V+ G D+ S L R+R++F+ P+ A ++QL+ L + + D
Sbjct: 6 NFNSALIPMVIEQSGRGERSFDIYSRLLRDRVVFLVGPVTDQSANLVVAQLLFLESENPD 65
Query: 136 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 195
DI +Y++ PGGS+Y+ L+IYD M +IKP V T+C G+AAS A +LA G KG R+A+PN
Sbjct: 66 KDISLYIDSPGGSVYAGLSIYDTMQFIKPDVSTICLGMAASMGAFLLAAGAKGKRFALPN 125
Query: 196 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+RIM++QP G+ G D++ Q E + R + L HT
Sbjct: 126 SRIMIHQPSGGTNGTAADIEIQAKEILELRSRLNTILSEHT 166
>gi|237755491|ref|ZP_04584113.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237692355|gb|EEP61341.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 201
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RII +G PI+ +A ++QL+ L + D D DI M
Sbjct: 8 LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDPDKDIYM 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + LAIYD M++IKP V T+C G AAS A +L+ G KG RY++PNARIM+
Sbjct: 68 YINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLPNARIMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ E + + + +L HT
Sbjct: 128 HQPLGGFQGQATDIEIHAKEILRLKRMLNEYLAKHT 163
>gi|67923459|ref|ZP_00516936.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
gi|67854694|gb|EAM49976.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
Length = 262
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 90/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 74 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 133
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 134 YDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVEIE 193
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 194 IQAKEILYIKKRLNDMLAEHT 214
>gi|210634106|ref|ZP_03297994.1| hypothetical protein COLSTE_01912 [Collinsella stercoris DSM 13279]
gi|210158957|gb|EEA89928.1| endopeptidase Clp [Collinsella stercoris DSM 13279]
Length = 206
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 98/143 (68%), Gaps = 7/143 (4%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L +RI+F+G+ +NS+ A I+QL+ L + D + DI +
Sbjct: 9 LVPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVNSVTANLVIAQLLHLESQDAEKDISL 68
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG +YS LAI D M++IKP V T+C G+AAS AA++LAGG KG R+++P+++IM+
Sbjct: 69 YINSPGGEVYSGLAILDTMNYIKPDVSTICVGMAASMAAVLLAGGAKGKRFSLPHSKIMI 128
Query: 201 NQPQSGSGGH---VEDVKRQVNE 220
+QP G+ G +E R++ E
Sbjct: 129 HQPSGGAQGQQTEIEIAAREIRE 151
>gi|416405032|ref|ZP_11687843.1| ATP-dependent Clp protease proteolytic subunit [Crocosphaera
watsonii WH 0003]
gi|357261367|gb|EHJ10638.1| ATP-dependent Clp protease proteolytic subunit [Crocosphaera
watsonii WH 0003]
Length = 262
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 90/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 74 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 133
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 134 YDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVEIE 193
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 194 IQAKEILYIKKRLNDMLAEHT 214
>gi|188996270|ref|YP_001930521.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931337|gb|ACD65967.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 201
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RII +G PI+ +A ++QL+ L + D D DI M
Sbjct: 8 LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDPDKDIYM 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + LAIYD M++IKP V T+C G AAS A +L+ G KG RY++PNARIM+
Sbjct: 68 YINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLPNARIMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ E + + + +L HT
Sbjct: 128 HQPLGGFQGQATDIEIHAREILRLKRMLNEYLAKHT 163
>gi|297182365|gb|ADI18531.1| protease subunit of ATP-dependent clp proteases [uncultured SAR406
cluster bacterium HF4000_22B16]
Length = 202
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 79 KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
+N+ L+P V+ G D+ S L + RI+F+G PI+ ++ I+Q + L D
Sbjct: 5 QNEIAQLIPMVVEQTGRTERAYDIYSRLLKERIVFLGTPIDDSISSLIIAQFLFLEAEDP 64
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
D DI +Y+N PGG I + +AI+D M++IKP V T+C G A+S A +LAGG+KG R A+P
Sbjct: 65 DKDIYLYINSPGGYITAGMAIFDTMNYIKPDVATICMGQASSMGAFLLAGGKKGKRSALP 124
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
N+RIM++QP G+ G D+K Q +E + R
Sbjct: 125 NSRIMIHQPMGGAEGQASDIKIQADEIIRLR 155
>gi|255657287|ref|ZP_05402696.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-23m63]
gi|296451860|ref|ZP_06893579.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP08]
gi|296879744|ref|ZP_06903718.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP07]
gi|296259339|gb|EFH06215.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP08]
gi|296429215|gb|EFH15088.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP07]
Length = 194
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 87/123 (70%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG+ IN +A ++QL+ L + D D+DI++Y+N PGGS+ + AIY
Sbjct: 19 DIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDIIIYINSPGGSVTAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++++ V T+C G+AAS +A +LAGG G RYA+PNA IM++QP G+ G DVK
Sbjct: 79 DTMNYVRCDVSTICIGMAASMSAFLLAGGTHGKRYALPNAEIMIHQPMGGAKGQATDVKI 138
Query: 217 QVN 219
V+
Sbjct: 139 AVD 141
>gi|15643458|ref|NP_228504.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima
MSB8]
gi|148269380|ref|YP_001243840.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
petrophila RKU-1]
gi|170288038|ref|YP_001738276.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga sp. RQ2]
gi|281411923|ref|YP_003346002.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
naphthophila RKU-10]
gi|418045135|ref|ZP_12683231.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima
MSB8]
gi|6685314|sp|Q9WZF9.1|CLPP_THEMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214719|sp|A5IJ91.1|CLPP_THEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706553|sp|B1L812.1|CLPP_THESQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|4981218|gb|AAD35777.1|AE001741_10 ATP-dependent Clp protease, proteolytic subunit [Thermotoga
maritima MSB8]
gi|147734924|gb|ABQ46264.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga
petrophila RKU-1]
gi|170175541|gb|ACB08593.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
sp. RQ2]
gi|281373026|gb|ADA66588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
naphthophila RKU-10]
gi|351678217|gb|EHA61364.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga maritima
MSB8]
Length = 203
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 84/119 (70%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVE 146
>gi|225175200|ref|ZP_03729196.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
alkaliphilus AHT 1]
gi|225169376|gb|EEG78174.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
alkaliphilus AHT 1]
Length = 193
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 91/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI+ VA I+QL+ L + D + DI +Y+N PGGS+Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFIGSPIDDNVANLVIAQLLFLESEDPEKDINIYVNSPGGSVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A++LA G G R+++PN+RIM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGLAASMGAVLLAAGADGKRFSLPNSRIMVHQPLGGAQGQAVDIEI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 139 HAKEILRIRERLNEILSGHT 158
>gi|222100864|ref|YP_002535432.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
neapolitana DSM 4359]
gi|221573254|gb|ACM24066.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
neapolitana DSM 4359]
Length = 200
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 84/119 (70%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 26 DIFSRLLKDRIVFLGSPIDDHVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 85
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 86 DTMQYIKCDVSTICVGQAASMAAVLLAAGTKGKRYALPNARIMIHQPLGGAEGPAKDVE 144
>gi|383323811|ref|YP_005384665.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. GT-I]
gi|383326980|ref|YP_005387834.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. PCC-P]
gi|383492864|ref|YP_005410541.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. PCC-N]
gi|384438132|ref|YP_005652857.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|339275165|dbj|BAK51652.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803]
gi|359273131|dbj|BAL30650.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. GT-I]
gi|359276301|dbj|BAL33819.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. PCC-N]
gi|359279471|dbj|BAL36988.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803 substr. PCC-P]
Length = 201
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 92/141 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 13 FDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 72
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 73 YDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIE 132
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + + L+ HT
Sbjct: 133 IQAREILYIKDRLNTMLVEHT 153
>gi|317050717|ref|YP_004111833.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfurispirillum indicum S5]
gi|316945801|gb|ADU65277.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfurispirillum indicum S5]
Length = 196
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 101/160 (63%), Gaps = 4/160 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ T G D+ S L ++RI+F+G I+ ++ I+QL+ L D + DI
Sbjct: 2 PLVPIVVEQTARGERSYDIYSRLLKDRIVFLGTQIDDQISNVIIAQLLFLEAEDPEKDIF 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGG + + +AIYD M +I+PKV T+C G AAS A++LA GEKG R+A+P++RIM
Sbjct: 62 LYINSPGGVVTAGMAIYDTMQYIRPKVSTICVGQAASMGAVLLAAGEKGKRFALPHSRIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
++QP G+ G D++ Q E + + + L+ HT D
Sbjct: 122 IHQPLGGAQGQATDIEIQAREILRIKEMLNDILVRHTGAD 161
>gi|224367556|ref|YP_002601719.1| protein ClpP1 [Desulfobacterium autotrophicum HRM2]
gi|259585947|sp|C0QGT0.1|CLPP_DESAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|223690272|gb|ACN13555.1| ClpP1 [Desulfobacterium autotrophicum HRM2]
Length = 205
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ D+ S L ++RIIF+G ++ VA ++QL+ L + D + DI
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDIN 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
Y+N PGG + + +A+YD M +IKP V TVC G AAS A++LA G KG R+++PN+RIM
Sbjct: 62 FYINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D+K Q NE + + V L HT
Sbjct: 122 IHQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHT 158
>gi|56750021|ref|YP_170722.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 6301]
gi|81300363|ref|YP_400571.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 7942]
gi|1705929|sp|P54415.1|CLPP1_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|67460444|sp|Q5N665.1|CLPP1_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|755165|gb|AAC67306.1| ClpP [Synechococcus elongatus PCC 7942]
gi|56684980|dbj|BAD78202.1| ATP-dependent protease ClpP [Synechococcus elongatus PCC 6301]
gi|81169244|gb|ABB57584.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
elongatus PCC 7942]
Length = 197
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ S VA R ++QL+ L D + DI +
Sbjct: 1 MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M+ I+P V TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G +D++ Q NE
Sbjct: 121 HQPLGGAQGQAKDIEIQANE 140
>gi|403252433|ref|ZP_10918743.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga sp. EMP]
gi|402812446|gb|EJX26925.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga sp. EMP]
Length = 201
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 84/119 (70%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 26 DIFSRLLKDRIVFLGSPIDDHVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 85
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 86 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVE 144
>gi|430750770|ref|YP_007213678.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
gi|430734735|gb|AGA58680.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
Length = 198
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 87/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+QL+ LA D + DI +Y+N PGGS+ + L IY
Sbjct: 19 DIYSRLLKDRIIFLGSPIDDDVANLVIAQLLFLAAEDPEKDIYLYINSPGGSVTAGLGIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A+++L G KG RYA+PN+ +M++QP G G D+K
Sbjct: 79 DTMQYIKPDVSTICVGIAASMASLLLTAGAKGKRYALPNSEVMIHQPLGGVRGQAADIKI 138
Query: 217 QVNEAVISRH 226
+ + ++H
Sbjct: 139 HADWILKTKH 148
>gi|172039352|ref|YP_001805853.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp. ATCC
51142]
gi|354552381|ref|ZP_08971689.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. ATCC 51472]
gi|171700806|gb|ACB53787.1| ATP-dependent Clp protease, proteolytic subunit [Cyanothece sp.
ATCC 51142]
gi|353555703|gb|EHC25091.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. ATCC 51472]
Length = 229
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 90/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 41 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 100
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 101 YDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMALPSSRIMIHQPLGGAQGQAVEIE 160
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 161 IQAKEILYIKKRLNDMLAEHT 181
>gi|407714558|ref|YP_006835123.1| ATP-dependent Clp protease, protease subunit [Burkholderia
phenoliruptrix BR3459a]
gi|407236742|gb|AFT86941.1| ATP-dependent Clp protease, protease subunit [Burkholderia
phenoliruptrix BR3459a]
Length = 214
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 4/145 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
MP V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI Y
Sbjct: 1 MPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDISFY 60
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM++
Sbjct: 61 INSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRGKRYALPNARIMIH 120
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRH 226
QP GS G D+ Q E + R
Sbjct: 121 QPSGGSQGTAADIDIQAKEVLYLRE 145
>gi|319941575|ref|ZP_08015901.1| ATP-dependent Clp protease proteolytic subunit [Sutterella
wadsworthensis 3_1_45B]
gi|319804945|gb|EFW01787.1| ATP-dependent Clp protease proteolytic subunit [Sutterella
wadsworthensis 3_1_45B]
Length = 196
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 14/150 (9%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R+RIIF+ +N A ++QL+ L + D D DI +
Sbjct: 3 LVPIVVESSGRSERSFDIYSRLLRDRIIFLTTEVNDQTASLIVAQLLFLESEDPDKDISL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + ++I+D M +I+PKV T+C G+AAS A +LA GEKG RYA+P++RIM+
Sbjct: 63 YINSPGGSVSAGMSIFDTMRFIRPKVNTICLGMAASMGAFLLAAGEKGKRYALPHSRIMI 122
Query: 201 NQPQSGSGGHVEDV----------KRQVNE 220
+QP G+ G DV KRQ+NE
Sbjct: 123 HQPLGGAEGQASDVEIRARQLLLIKRQMNE 152
>gi|254446451|ref|ZP_05059927.1| Clp protease [Verrucomicrobiae bacterium DG1235]
gi|198260759|gb|EDY85067.1| Clp protease [Verrucomicrobiae bacterium DG1235]
Length = 182
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 87/132 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L ++RI+FIG PIN +A I+QL+ L D DI +Y+N PGGS+ S +AI
Sbjct: 1 MDIYSRLLKDRIVFIGTPINDEIANAIIAQLLFLQMEDPKKDINVYINSPGGSVTSGMAI 60
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M+++ +V T C G+AAS I+LAGG KG RYA+PN+R+M++QP G+GG D+
Sbjct: 61 YDTMNFLSCEVSTWCIGMAASMGTILLAGGTKGKRYALPNSRVMIHQPSGGAGGQASDIS 120
Query: 216 RQVNEAVISRHV 227
Q E + R
Sbjct: 121 IQAKEIIRWRET 132
>gi|86159772|ref|YP_466557.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Anaeromyxobacter dehalogenans 2CP-C]
gi|220918591|ref|YP_002493895.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter dehalogenans 2CP-1]
gi|115311353|sp|Q2IEW1.1|CLPP_ANADE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763782|sp|B8J5G7.1|CLPP_ANAD2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|85776283|gb|ABC83120.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Anaeromyxobacter dehalogenans 2CP-C]
gi|219956445|gb|ACL66829.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 203
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 86/126 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 217 QVNEAV 222
Q EA+
Sbjct: 141 QAKEAL 146
>gi|434399019|ref|YP_007133023.1| ATP-dependent Clp protease proteolytic subunit [Stanieria
cyanosphaera PCC 7437]
gi|428270116|gb|AFZ36057.1| ATP-dependent Clp protease proteolytic subunit [Stanieria
cyanosphaera PCC 7437]
Length = 227
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G PI+ VA ++QL+ L D + DI +
Sbjct: 25 VVPMVIEQSGIGERAFDIYSRLLRERIVFLGTPIDDKVADSIVAQLLYLEAEDPEKDIQL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+YS +AIYD M I+P + T+C+G+AAS A +L+GG KG R A+P++RIM+
Sbjct: 85 YINSPGGSVYSGMAIYDTMQQIQPDIVTICYGIAASMGAFLLSGGTKGKRMALPSSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + HT
Sbjct: 145 HQPLGGAQGQAVDIEIQAREILYIKKRLNDLIAEHT 180
>gi|294101895|ref|YP_003553753.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Aminobacterium colombiense DSM 12261]
gi|293616875|gb|ADE57029.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Aminobacterium colombiense DSM 12261]
Length = 193
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+GQ I+ +A ++QL+ L + D D DI +
Sbjct: 2 LIPMVIEQSGRGERAYDIYSRLLKDRIIFLGQEIDDPIANTVVAQLLFLESEDPDKDIHL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG I S LAIYD M +IK V T+C G AAS AA++LAGG G R A+PNAR+M+
Sbjct: 62 YINSPGGVISSGLAIYDTMQYIKSPVSTICIGQAASMAAVLLAGGAPGKRIALPNARVMI 121
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ E + R L+ HT
Sbjct: 122 HQPLGGAHGQATDIEIHAKEILKIREKINDILVKHT 157
>gi|86610014|ref|YP_478776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. JA-2-3B'a(2-13)]
gi|115311349|sp|Q2JIP1.1|CLPP2_SYNJB RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|86558556|gb|ABD03513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. JA-2-3B'a(2-13)]
Length = 200
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R+RIIF+G ++ +A ++Q++ L + D + DI +Y+N PGGS+Y+ +AI
Sbjct: 16 FDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAI 75
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C G+AAS A +LAGG KG R A+P+ARIM++QP G+ G D++
Sbjct: 76 YDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIE 135
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + ++ S L HT
Sbjct: 136 IQAKEILFIKNSLNSLLAYHT 156
>gi|170693532|ref|ZP_02884691.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
graminis C4D1M]
gi|170141687|gb|EDT09856.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
graminis C4D1M]
Length = 219
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDISF 72
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRGKRYALPNARIMI 132
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP GS G D+ Q E + R
Sbjct: 133 HQPSGGSQGTAADIDIQAKEVLYLRE 158
>gi|197123826|ref|YP_002135777.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Anaeromyxobacter sp. K]
gi|226706439|sp|B4UAX9.1|CLPP_ANASK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|196173675|gb|ACG74648.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter sp. K]
Length = 203
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 86/126 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 217 QVNEAV 222
Q EA+
Sbjct: 141 QAKEAL 146
>gi|378824294|ref|ZP_09846807.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Sutterella parvirubra YIT 11816]
gi|378596865|gb|EHY30240.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Sutterella parvirubra YIT 11816]
Length = 194
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 14/150 (9%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R+RI+F+ +N A ++QL+ L + D D DI +
Sbjct: 3 LVPIVVESSGRGERSFDIYSRLLRDRIVFLNTDVNDQSASLIVAQLLFLESEDPDKDISL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AI+D M +I+PKV T+C G+AAS A +LA GEKG RYA+P++RIM+
Sbjct: 63 YINSPGGSVSAGMAIFDTMRFIRPKVNTICMGMAASMGAFLLAAGEKGKRYALPHSRIMI 122
Query: 201 NQPQSGSGGHVEDV----------KRQVNE 220
+QP G+ G DV KRQ+NE
Sbjct: 123 HQPLGGAEGQASDVEIRARQLLLIKRQMNE 152
>gi|375084538|ref|ZP_09731403.1| ATP-dependent Clp protease proteolytic subunit [Megamonas
funiformis YIT 11815]
gi|374568042|gb|EHR39235.1| ATP-dependent Clp protease proteolytic subunit [Megamonas
funiformis YIT 11815]
Length = 198
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGGPIDDNVANVVIAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +++LA G KG RYA+P +RIM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICIGQAASMGSVLLAAGAKGKRYALPYSRIMIHQPLGGAQGQSTDIQI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R L HT
Sbjct: 139 QAREILRIRETLNEILSRHT 158
>gi|218440073|ref|YP_002378402.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanothece sp.
PCC 7424]
gi|218172801|gb|ACK71534.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7424]
Length = 229
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 104/177 (58%), Gaps = 11/177 (6%)
Query: 64 KDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVA 119
K +CS KI SG + ++P V+ G D+ S L R RI+F+G I+ VA
Sbjct: 12 KSYCSP----KIYSGLQN---ILPVVIEQSGMGERAFDIYSRLLRERIVFLGTAIDDNVA 64
Query: 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 179
++QL+ L D + DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A
Sbjct: 65 DSIVAQLLYLDAEDPEKDIQIYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGA 124
Query: 180 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+L+GG KG R A+P+AR+M++QP G+ G ++ Q E + + + L HT
Sbjct: 125 FLLSGGAKGKRMALPSARMMIHQPIGGAQGQAVEIDIQAKEILYIKQRLNTLLAEHT 181
>gi|260887080|ref|ZP_05898343.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|330839143|ref|YP_004413723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|402833991|ref|ZP_10882598.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. CM52]
gi|260863142|gb|EEX77642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|329746907|gb|AEC00264.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|402279060|gb|EJU28103.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. CM52]
Length = 206
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA ++QL+ L + D D DI +Y+N PGG + + LAIY
Sbjct: 24 DIYSRLLKDRIVFVGGPIDDNVANVVVAQLLFLESEDPDKDIHLYINSPGGVVTAGLAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+P V T+C G AAS +++L G KG RYA+P ARIM++QP G+ G D++
Sbjct: 84 DTMQYIRPDVSTICIGQAASMGSLLLTAGAKGKRYALPLARIMIHQPLGGAQGQSTDIQI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R V L HT
Sbjct: 144 QAKEILRLREVGNDILAKHT 163
>gi|392959640|ref|ZP_10325122.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans DSM 17108]
gi|421052494|ref|ZP_15515483.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelosinus
fermentans B4]
gi|421058665|ref|ZP_15521332.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans B3]
gi|421066386|ref|ZP_15528000.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A12]
gi|421070550|ref|ZP_15531682.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A11]
gi|392443225|gb|EIW20776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelosinus
fermentans B4]
gi|392448176|gb|EIW25379.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A11]
gi|392456193|gb|EIW32947.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans DSM 17108]
gi|392456278|gb|EIW33029.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A12]
gi|392460320|gb|EIW36635.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans B3]
Length = 201
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI+ VA I+QL+ L + D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIFSRLLKDRIIFIGGPIDDNVANLVIAQLLFLESEDPEKDIHVYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG RYA+P ARIM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICLGSAASMGALLLTAGAKGKRYALPYARIMIHQPLGGTQGQATDIEI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R + L+ HT
Sbjct: 139 HAREILRLRELLNGILIQHT 158
>gi|373457870|ref|ZP_09549637.1| ATP-dependent Clp protease proteolytic subunit [Caldithrix abyssi
DSM 13497]
gi|371719534|gb|EHO41305.1| ATP-dependent Clp protease proteolytic subunit [Caldithrix abyssi
DSM 13497]
Length = 206
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 90/148 (60%), Gaps = 4/148 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ G D+ S L + RI+F+G PI+ VA ISQL+ L D DI
Sbjct: 2 PLVPIVIEQTGRSERAYDIYSRLLKERIVFLGTPIDDNVASLIISQLLFLEAEDPTKDIY 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGG + S LAIYD M +IKP V T C G AAS A++LA G KG RYA+P+ARIM
Sbjct: 62 LYINSPGGIVSSGLAIYDTMRYIKPDVVTTCMGQAASMGAVLLAAGAKGKRYALPHARIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHV 227
++QP G+ G D+ NE + + V
Sbjct: 122 IHQPLGGAEGQASDIAIAANEILRIKKV 149
>gi|299471219|emb|CBN79074.1| chloroplast clp protease P [Ectocarpus siliculosus]
Length = 292
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Query: 83 PPL-MPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
PP+ MP V G +D+ S L ++RI+ +GQ +N VA ++QL+ LA D D DI +Y
Sbjct: 87 PPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPDKDITLY 146
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+ + +AIYD M ++ V TVCFG AAS A +L G KG R ++PNARIM++
Sbjct: 147 INSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIH 206
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFL 232
QP G+ G D++ Q E + R + S++
Sbjct: 207 QPLGGAQGQAADIEIQAKEILFIRSLLNSYM 237
>gi|291278625|ref|YP_003495460.1| ATP-dependent Clp protease proteolytic subunit [Deferribacter
desulfuricans SSM1]
gi|290753327|dbj|BAI79704.1| ATP-dependent Clp protease, proteolytic subunit [Deferribacter
desulfuricans SSM1]
Length = 195
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 85/124 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA I+Q++ L D D DI +Y+N PGG I S LAIY
Sbjct: 20 DIYSRLLKDRIIFLGTAIDDNVANVVIAQMLFLEAEDPDKDIYLYINSPGGVITSGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V T+C G AAS AA++L+ G KG R+A+PNARIM++QP G G +D++
Sbjct: 80 DTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRFALPNARIMIHQPLGGFQGQAKDIEI 139
Query: 217 QVNE 220
NE
Sbjct: 140 HANE 143
>gi|323527161|ref|YP_004229314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1001]
gi|323384163|gb|ADX56254.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1001]
Length = 227
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDISF 72
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQRGKRYALPNARIMI 132
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP GS G D+ Q E + R
Sbjct: 133 HQPSGGSQGTAADIDIQAKEVLYLRE 158
>gi|86605879|ref|YP_474642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. JA-3-3Ab]
gi|115311348|sp|Q2JV68.1|CLPP2_SYNJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|86554421|gb|ABC99379.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. JA-3-3Ab]
Length = 200
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R+RIIF+G ++ +A ++Q++ L + D + DI +Y+N PGGS+Y+ +AI
Sbjct: 16 FDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAI 75
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C G+AAS A +LAGG KG R A+P+ARIM++QP G+ G D++
Sbjct: 76 YDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIE 135
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + ++ S L HT
Sbjct: 136 IQAKEILFIKNSLNSLLAYHT 156
>gi|123969397|ref|YP_001010255.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
AS9601]
gi|126697184|ref|YP_001092070.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9301]
gi|123199507|gb|ABM71148.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
AS9601]
gi|126544227|gb|ABO18469.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9301]
Length = 214
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 93/155 (60%), Gaps = 4/155 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D + DI +Y
Sbjct: 26 VPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPEKDIQIY 85
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN+RIM++
Sbjct: 86 INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 145
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
QP G+ G +++ Q E + + S L HT
Sbjct: 146 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHT 180
>gi|443324676|ref|ZP_21053413.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xenococcus
sp. PCC 7305]
gi|442795717|gb|ELS05067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xenococcus
sp. PCC 7305]
Length = 219
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 4/158 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI +Y
Sbjct: 27 LPMVVEQSGIGERSFDIYSRLLRERIIFLGTAIDDKVADSVVAQLLYLEAEDPEKDIQLY 86
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+YS +AIYD M I+P V T+C+G+AAS A +L+GG KG R ++P++RIM++
Sbjct: 87 INSPGGSVYSGMAIYDTMQQIQPDVVTICYGIAASMGAFLLSGGTKGKRMSLPSSRIMIH 146
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
QP G+ G D++ Q E + + + HT D
Sbjct: 147 QPLGGAQGQAVDIEIQAKEILYIKKRLNELIAGHTEQD 184
>gi|332708809|ref|ZP_08428780.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
gi|332352351|gb|EGJ31920.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
Length = 230
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 8/169 (4%)
Query: 72 SYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
Y+I S ++P V+ G D+ S L R RI+F+G ++ +VA ++QL+
Sbjct: 19 QYQITSSST----VVPMVVEQSGMGERAFDIYSRLLRERIVFLGTQVDDVVADSIVAQLL 74
Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
L DE+ DI +Y+N PGGS+ + +AIYD M ++P V T+C+G+AAS A +LAGG
Sbjct: 75 YLEAEDEEKDIQLYINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMGAFLLAGGAA 134
Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
G R A+PN+RIM++QP G+ G D++ Q E + + L HT
Sbjct: 135 GKRMALPNSRIMIHQPLGGAQGQAVDIEIQAREILYHKQTLNQLLANHT 183
>gi|320535322|ref|ZP_08035441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
phagedenis F0421]
gi|320147822|gb|EFW39319.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
phagedenis F0421]
Length = 203
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+ IN VA ++QL+ L + + D DI +
Sbjct: 8 LVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEINDTVADLIVAQLLFLESQNPDKDISL 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M I+PK+ T+C G AAS AA++LAGG G R+A+P++R+M+
Sbjct: 68 YINSPGGSVTAGLAIYDTMQHIRPKIQTICLGQAASMAAVLLAGGSAGKRFALPSSRVMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ Q E + + +++ + HT
Sbjct: 128 HQPWGGVQGQASDISIQAKEIIRLKKLTIKYFAEHT 163
>gi|209517482|ref|ZP_03266323.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. H160]
gi|209502136|gb|EEA02151.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. H160]
Length = 218
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDICF 72
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARIMI 132
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISR 225
+QP G G DV+ Q E + R
Sbjct: 133 HQPSGGGQGTAADVEIQAKEVLYVR 157
>gi|33862212|ref|NP_893773.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|67460514|sp|Q7UZK7.1|CLPP3_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|33634430|emb|CAE20115.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 215
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D DI +Y
Sbjct: 25 VPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPHKDIQIY 84
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+ + LAIYD M I P V T+CFGVAAS A +L+GG KG R A+PN+RIM++
Sbjct: 85 INSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 144
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
QP G+ G +++ Q E + + S L HT
Sbjct: 145 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHT 179
>gi|374339257|ref|YP_005095993.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinitoga
piezophila KA3]
gi|372100791|gb|AEX84695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinitoga
piezophila KA3]
Length = 198
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L ++RIIF+G +N V+ ++Q++ L D + DI +Y
Sbjct: 5 IPVVVESSGRYERAYDIYSRLLKDRIIFLGSEVNDYVSNLIVAQMLFLEAQDPEKDIYLY 64
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGSI + LAIYD M +IKP V T+C G AAS A++L G KG R+A+PN+RIM++
Sbjct: 65 INSPGGSITAGLAIYDTMQYIKPDVSTICIGQAASMGAVLLTAGAKGKRFALPNSRIMIH 124
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
QP G+ G +D++ Q E + + + L HT D
Sbjct: 125 QPWGGAQGTAKDIEIQAQEILRMKKMLNKILSEHTGKD 162
>gi|78780133|ref|YP_398245.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9312]
gi|115311352|sp|Q317Y6.1|CLPP4_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 4;
AltName: Full=Endopeptidase Clp 4
gi|78713632|gb|ABB50809.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9312]
Length = 219
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 93/155 (60%), Gaps = 4/155 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D + DI +Y
Sbjct: 31 VPTVIEQSGRGERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDIQIY 90
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN+RIM++
Sbjct: 91 INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 150
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
QP G+ G +++ Q E + + S L HT
Sbjct: 151 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHT 185
>gi|157364285|ref|YP_001471052.1| ATP-dependent Clp protease proteolytic subunit [Thermotoga
lettingae TMO]
gi|167008651|sp|A8F754.1|CLPP_THELT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157314889|gb|ABV33988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermotoga
lettingae TMO]
Length = 199
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 90/135 (66%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+F+G I+ VA ++QL+ L D D DI +
Sbjct: 7 LIPTVIESTGRYERAYDIYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQL 66
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IK V T+C G AAS AA++LA G KG R+A+PNARIML
Sbjct: 67 YINSPGGSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIML 126
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G V+DV+
Sbjct: 127 HQPLGGAEGPVKDVE 141
>gi|428777917|ref|YP_007169704.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halothece sp.
PCC 7418]
gi|428692196|gb|AFZ45490.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halothece sp.
PCC 7418]
Length = 228
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G DL S L R RIIF+G P++ +A +Q++ L D + DI +
Sbjct: 28 VVPMVIEQSGMGERAFDLYSRLLRERIIFLGTPVDDQIADSVAAQMLFLEAEDPEKDIQL 87
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD M I+P V T+C+G+AAS A +LAGG G R ++ N+RIM+
Sbjct: 88 YINSPGGSVYAGMAIYDTMQQIQPDVATICYGLAASMGAFLLAGGAAGKRMSLTNSRIMI 147
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + ++ L HT
Sbjct: 148 HQPLGGAQGQAADIEIQAREILYIKNTLNELLAYHT 183
>gi|430751620|ref|YP_007214528.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
gi|430735585|gb|AGA59530.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
Length = 195
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PIN +VA I+Q++ LA D + DI +Y+N PGGSI S +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTPINDVVANSVIAQMLFLAADDPEKDIHLYINSPGGSITSGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G G RYA+PN+ +M++QP G+ G D++
Sbjct: 81 DTMQYIKPDVSTICVGMAASMGAFLLAAGAPGKRYALPNSEVMIHQPLGGAEGQASDIE 139
>gi|126659496|ref|ZP_01730629.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
CCY0110]
gi|126619230|gb|EAZ89966.1| ATP-dependent Clp protease proteolytic subunit [Cyanothece sp.
CCY0110]
Length = 201
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 90/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 13 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQIYINSPGGSVYAGLAI 72
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM++QP G+ G +++
Sbjct: 73 YDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVEIE 132
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 133 IQAKEILYIKKRLNDMLAEHT 153
>gi|254525962|ref|ZP_05138014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9202]
gi|221537386|gb|EEE39839.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9202]
Length = 214
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 94/161 (58%), Gaps = 4/161 (2%)
Query: 80 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 135
N +P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D +
Sbjct: 20 NKTVTAVPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPE 79
Query: 136 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 195
DI +Y+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN
Sbjct: 80 KDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPN 139
Query: 196 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+RIM++QP G+ G +++ Q E + + S L HT
Sbjct: 140 SRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHT 180
>gi|157414262|ref|YP_001485128.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9215]
gi|157388837|gb|ABV51542.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9215]
Length = 214
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 94/161 (58%), Gaps = 4/161 (2%)
Query: 80 NDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 135
N +P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D +
Sbjct: 20 NKTVAAVPTVIEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPE 79
Query: 136 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 195
DI +Y+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN
Sbjct: 80 KDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPN 139
Query: 196 ARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+RIM++QP G+ G +++ Q E + + S L HT
Sbjct: 140 SRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHT 180
>gi|160902469|ref|YP_001568050.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
mobilis SJ95]
gi|160360113|gb|ABX31727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Petrotoga
mobilis SJ95]
Length = 205
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 88/139 (63%), Gaps = 4/139 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
MP V+ G D+ S L ++RI+F+G PIN VA I+QL+ L + D D DI +Y
Sbjct: 5 MPVVIETEGRYERAYDIYSRLLKDRIVFLGTPINDDVANVIIAQLLFLESQDPDKDIFLY 64
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+ S L IYD M ++KP + T+C G AAS A++LA G KG RY++P +RIM++
Sbjct: 65 INSPGGSVTSGLGIYDTMQYVKPDISTICIGQAASMGAVLLAAGAKGKRYSLPYSRIMIH 124
Query: 202 QPQSGSGGHVEDVKRQVNE 220
QP G+ G D++ E
Sbjct: 125 QPWGGAEGTAIDIQIHARE 143
>gi|406875289|gb|EKD25097.1| ATP-dependent Clp protease proteolytic subunit [uncultured
bacterium (gcode 4)]
Length = 197
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 92/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L +RIIF+G+P+ + + ++QL+ L D D DI+M++N PGG +YS +AIY
Sbjct: 19 DIYSRLLEDRIIFVGEPVAAHMVNSIVAQLLFLEKKDPDKDIIMFVNTPGGEVYSGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G+AAS +IILAGG KG RY++P+++IM++QP G G D+
Sbjct: 79 DVMQYVKCDVSTICVGLAASMGSIILAGGTKGKRYSLPHSKIMIHQPLGGIEGQASDIVI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + +++ + + HT
Sbjct: 139 QAEEILKVKNMFIGLMAKHT 158
>gi|332283982|ref|YP_004415893.1| ATP-dependent Clp protease proteolytic subunit [Pusillimonas sp.
T7-7]
gi|330427935|gb|AEC19269.1| ATP-dependent Clp protease proteolytic subunit [Pusillimonas sp.
T7-7]
Length = 218
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERVIFFVGPVNDHTANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LA G KG RY +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGIAASMGAFLLAAGAKGKRYTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNE 220
Q E
Sbjct: 160 QARE 163
>gi|307151649|ref|YP_003887033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7822]
gi|306981877|gb|ADN13758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7822]
Length = 228
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G I+ VA ++QL+ L D + DI +
Sbjct: 26 IVPVVIEQSGMGERAFDIYSRLLRERIVFLGTAIDDNVADSIVAQLLYLDAEDPEKDIQL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L+GG KG R A+P+ARIM+
Sbjct: 86 YINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGTKGKRMALPSARIMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G ++ Q E + + S L HT
Sbjct: 146 HQPIGGAQGQAVEIDIQAKEILYIKQRLNSLLAEHT 181
>gi|124026830|ref|YP_001015945.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
NATL1A]
gi|123961898|gb|ABM76681.1| Clp protease proteolytic subunit [Prochlorococcus marinus str.
NATL1A]
Length = 218
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P ++P V+ G D+ S L R RIIF+G +N VA ++Q++ L D + DI
Sbjct: 23 PGVLPTVIEQSGQGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDI 82
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PN+RI
Sbjct: 83 QLYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRI 142
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G +++ Q E + + S L HT
Sbjct: 143 MIHQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHT 180
>gi|427724491|ref|YP_007071768.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7376]
gi|427356211|gb|AFY38934.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7376]
Length = 218
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G DL S L R RIIF+G I+ VA ++QL+ L D + DI +
Sbjct: 26 VVPMVVEQSGMGERAFDLYSRLLRERIIFLGSAIDDTVADSIVAQLLFLDAEDAEKDIQI 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD M I+P V T+C+G+AAS A +L+GG KG R A+P++R+M+
Sbjct: 86 YVNSPGGSVYAGMAIYDTMQQIRPDVVTICYGIAASMGAFLLSGGTKGKRMALPSSRVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + S + HT
Sbjct: 146 HQPLGGAQGQAVDIEIQAKEILYIKEKLNSLIADHT 181
>gi|338729930|ref|YP_004659322.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga
thermarum DSM 5069]
gi|335364281|gb|AEH50226.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermotoga
thermarum DSM 5069]
Length = 202
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 84/119 (70%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ A ++QL+ L D D DI +Y+N PGGS+ + LAIY
Sbjct: 25 DIYSRLLKDRIVFLGYPIDDHTANLVVAQLLFLEAEDPDKDIHLYINSPGGSVTAGLAIY 84
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M ++K V T+C G AAS AA++LA G KG RYA+PNARIML+QP G+ G V+DV+
Sbjct: 85 DTMQYVKCDVVTICIGQAASMAAVLLASGTKGKRYALPNARIMLHQPLGGAEGPVKDVE 143
>gi|242053033|ref|XP_002455662.1| hypothetical protein SORBIDRAFT_03g018270 [Sorghum bicolor]
gi|241927637|gb|EES00782.1| hypothetical protein SORBIDRAFT_03g018270 [Sorghum bicolor]
Length = 313
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 85/130 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
LD S++L R RI+F+G ++ A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 75 LDTSNMLLRQRIVFLGSSVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGV 134
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M + K V TVCFG+AAS A +LA G KG RY MPNARIM++QP G+GG V ++
Sbjct: 135 YDAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCMPNARIMIHQPSGGAGGKVTEMG 194
Query: 216 RQVNEAVISR 225
Q+ E + +
Sbjct: 195 LQIREMMYEK 204
>gi|295677486|ref|YP_003606010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1002]
gi|295437329|gb|ADG16499.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1002]
Length = 215
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDISF 72
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQRGKRYALPNARIMI 132
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISR 225
+QP G G D++ Q E + R
Sbjct: 133 HQPSGGGQGTAADIEIQAKEVLYVR 157
>gi|56421597|ref|YP_148915.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
kaustophilus HTA426]
gi|261420500|ref|YP_003254182.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
Y412MC61]
gi|319768169|ref|YP_004133670.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
sp. Y412MC52]
gi|375010197|ref|YP_004983830.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|448239320|ref|YP_007403378.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
GHH01]
gi|67460172|sp|Q5KVD9.1|CLPP_GEOKA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56381439|dbj|BAD77347.1| ATP-dependent Clp protease proteolytic subunit (class III
heat-shock protein) [Geobacillus kaustophilus HTA426]
gi|261376957|gb|ACX79700.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. Y412MC61]
gi|317113035|gb|ADU95527.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. Y412MC52]
gi|359289046|gb|AEV20730.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|445208162|gb|AGE23627.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
GHH01]
Length = 196
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA +SQL+ LA D D DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIE 137
>gi|226507940|ref|NP_001149210.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
gi|195625490|gb|ACG34575.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
Length = 285
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 85/130 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
LD +++L R RI+F+G P++ A ISQL+ L D+ DI +++N PGGSI + + +
Sbjct: 72 LDTTNMLLRQRIVFLGSPVDDTSADLIISQLLLLDAEDQTKDIKLFINSPGGSITAGMGV 131
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M + K V TVCFG+AAS A +LA G KG RY PNARIM++QP G+GG V ++
Sbjct: 132 YDAMKFCKADVSTVCFGLAASMGAFLLAAGTKGKRYCXPNARIMIHQPSGGAGGKVTEMG 191
Query: 216 RQVNEAVISR 225
Q+ E + +
Sbjct: 192 LQIREMMYEK 201
>gi|170078144|ref|YP_001734782.1| Clp protease [Synechococcus sp. PCC 7002]
gi|169885813|gb|ACA99526.1| Clp protease [Synechococcus sp. PCC 7002]
Length = 197
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 90/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RI+F+G I+ VA ++QL+ L D D DI +Y+N PGGS+Y+ +AI
Sbjct: 20 FDIYSRLLRERIVFLGTAIDDTVADSVVAQLLFLDAEDADKDIQLYINSPGGSVYAGMAI 79
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C+G+AAS A +L+GG KG R A+P++RIM++QP G+ G D++
Sbjct: 80 YDTMQQIRPNVVTICYGIAASMGAFLLSGGTKGKRMALPSSRIMIHQPLGGAQGQAVDIE 139
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + + + HT
Sbjct: 140 IQAKEILYIKDKLNTLIADHT 160
>gi|445496993|ref|ZP_21463848.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
gi|444786988|gb|ELX08536.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
Length = 208
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 99/162 (61%), Gaps = 11/162 (6%)
Query: 76 ISGKNDNPPL-------MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAIS 124
++G N NP L +P V+ G D+ S L + R+IF+ P+N +A ++
Sbjct: 1 MTGMNRNPALDTEMLGLVPMVVEQSGRGERSYDIYSRLLKERVIFMVGPVNDQMANLIVA 60
Query: 125 QLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAG 184
QL+ L + + D DI +Y+N PGGS+ + LAI+D M +IKP V T+C G+AAS A +LA
Sbjct: 61 QLLFLESENPDKDISLYINSPGGSVSAGLAIFDTMQFIKPDVSTLCTGMAASMGAFLLAA 120
Query: 185 GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
G KG R+++PN+RIM++QP GS G D++ Q E + RH
Sbjct: 121 GAKGKRFSLPNSRIMIHQPSGGSQGMASDIEIQAKEILYLRH 162
>gi|260892392|ref|YP_003238489.1| ATP-dependent Clp protease proteolytic subunit [Ammonifex degensii
KC4]
gi|260864533|gb|ACX51639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex
degensii KC4]
Length = 200
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI+ +A I+QL+ L D + DI +Y+N PGG + + +AIY
Sbjct: 21 DIYSRLLKDRIIFIGGPIDDHLANLVIAQLLFLEAEDPEKDIHLYINSPGGLVTAGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+P V T+C G AAS AA +LA G KG RYA+P ARIML+QP G G +V+
Sbjct: 81 DTMQYIRPDVSTICLGQAASMAAFLLAAGAKGKRYALPYARIMLHQPLGGFQGQATEVEI 140
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R V L HT
Sbjct: 141 HAREIMRMRQVLNELLSKHT 160
>gi|346310669|ref|ZP_08852683.1| Clp protease [Collinsella tanakaei YIT 12063]
gi|345897303|gb|EGX67226.1| Clp protease [Collinsella tanakaei YIT 12063]
Length = 207
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 96/143 (67%), Gaps = 7/143 (4%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L +RIIF+G+ INS+ A I+QL+ L + D + DI +
Sbjct: 9 LVPYVIEQTPRGERSYDIYSRLLNDRIIFLGEEINSVTANLVIAQLLHLESQDAEKDISL 68
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG +YS LAI D M++IKP+V T+C G+AAS AA++LA G KG R+ +PN+ +M+
Sbjct: 69 YINSPGGEVYSGLAILDTMNYIKPQVSTICVGMAASMAAVLLASGAKGKRFCLPNSIVMI 128
Query: 201 NQPQSGSGGH---VEDVKRQVNE 220
+QP G+ G +E R++ E
Sbjct: 129 HQPSGGAQGQQTEIEIAAREIRE 151
>gi|312131371|ref|YP_003998711.1| ATP-dependent clp protease proteolytic subunit clpp [Leadbetterella
byssophila DSM 17132]
gi|311907917|gb|ADQ18358.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leadbetterella
byssophila DSM 17132]
Length = 225
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 91/141 (64%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G I+ VA ++QL+ L ++D DILMYLN PGGS+Y+ L +
Sbjct: 48 IDVFSRLIMDRIIFVGTGIDDQVANIVVAQLLFLESVDAKKDILMYLNSPGGSVYAGLGM 107
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +++P+V T+C +AAS A++LAGG G R A+P+AR+M++QP G+ G D++
Sbjct: 108 YDTMQYVRPEVATICTSLAASMGAVLLAGGAAGKRTALPHARVMIHQPSGGAQGQSRDME 167
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
V + + R L HT
Sbjct: 168 ITVKQIIELRKELYEILAQHT 188
>gi|397905705|ref|ZP_10506547.1| ATP-dependent Clp protease proteolytic subunit [Caloramator
australicus RC3]
gi|397161224|emb|CCJ33882.1| ATP-dependent Clp protease proteolytic subunit [Caloramator
australicus RC3]
Length = 196
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 89/139 (64%), Gaps = 10/139 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G IN A I+QL+ L + D D DI +Y+N PGG I + LAIY
Sbjct: 19 DIYSRLLKERIIFLGDEINDQTANLVIAQLLFLESEDPDKDIYLYINSPGGVISAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG------- 209
D M +IKP V T+C G+AAS AA++LA G KG R+A+PN+ IM++QP G+ G
Sbjct: 79 DTMQYIKPDVSTICVGMAASMAAVLLAAGAKGKRFALPNSEIMIHQPLGGARGQATDIAI 138
Query: 210 ---HVEDVKRQVNEAVISR 225
H+ +K+++NE + R
Sbjct: 139 HAEHILKLKKRLNEILSER 157
>gi|289548353|ref|YP_003473341.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermocrinis
albus DSM 14484]
gi|289181970|gb|ADC89214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermocrinis
albus DSM 14484]
Length = 199
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 101/156 (64%), Gaps = 15/156 (9%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L D + DI M
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGYPIDDHVANLIVAQLLFLEAQDPEKDIYM 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G AAS AA++LA G KG RY++P++RIM+
Sbjct: 68 YINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMAAVLLAAGAKGKRYSLPHSRIMI 127
Query: 201 NQPQSGSGG-------HVEDVKR---QVNEAVISRH 226
+QP G G H E++KR +NE +I++H
Sbjct: 128 HQPMGGISGQATDIIIHAEEIKRIKHMLNE-IIAKH 162
>gi|116074350|ref|ZP_01471612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. RS9916]
gi|116069655|gb|EAU75407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. RS9916]
Length = 229
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P ++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI
Sbjct: 28 PGVLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKDI 87
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 88 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 147
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + + HT
Sbjct: 148 MIHQPMGGAQGQAVDIEIQAQEILYLKETLNGLMAEHT 185
>gi|399050633|ref|ZP_10740728.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
gi|398051596|gb|EJL43914.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
Length = 200
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PIN VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDIHLYINSPGGSITAGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G+ G D++
Sbjct: 81 DTMHFIKPDVSTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQASDIE 139
>gi|433542295|ref|ZP_20498724.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
gi|432186391|gb|ELK43863.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
Length = 198
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PIN VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDIHLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMHFIKPDVSTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQASDIE 137
>gi|381207872|ref|ZP_09914943.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR324
cluster bacterium JCVI-SC AAA005]
Length = 202
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 96/161 (59%), Gaps = 4/161 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ T G D+ S L ++RI FIG PI+ VA I+QL+ L D ++DI
Sbjct: 2 PLIPMVVEQTNRGERSYDIYSRLLKDRIAFIGTPIDDNVANLMIAQLLFLEAEDPESDIS 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+NCPGG + + LAIYD M +++P+V T+C G AAS AI+LA G G RYA+PN RIM
Sbjct: 62 LYINCPGGLVSAGLAIYDTMQYLRPQVQTICIGQAASMGAILLAAGAPGKRYALPNCRIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS 240
++Q G G ED+ Q E V L HT D+
Sbjct: 122 IHQLMGGFSGQAEDIDIQAREIVRLTGTLNDILAKHTGKDA 162
>gi|428222892|ref|YP_007107062.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7502]
gi|427996232|gb|AFY74927.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7502]
Length = 214
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Query: 68 STEHSYKIISGKNDNPPLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAI 123
S HSY G N ++P V+ G D+ S L R RIIF+G +N VA +
Sbjct: 9 SQYHSY----GNIQNSEIVPMVVEQSGKGERAFDIFSRLLRERIIFLGTEVNDSVASVMM 64
Query: 124 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 183
SQL+ L D DI +Y+N PGGS+ S +AIYD M ++P V T+C G+AAS A +L+
Sbjct: 65 SQLLFLEAEDPQKDIYVYINSPGGSVTSGMAIYDTMQHVRPDVSTICMGLAASMGAFLLS 124
Query: 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
G KG R ++PN+RIM++QP G+ G D++ Q E + + L HT
Sbjct: 125 AGAKGKRLSLPNSRIMIHQPLGGARGQAVDIEIQAKEILYHKRTLNKLLAEHT 177
>gi|150388889|ref|YP_001318938.1| ATP-dependent Clp protease proteolytic subunit [Alkaliphilus
metalliredigens QYMF]
gi|167008644|sp|A6TM61.1|CLPP_ALKMQ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|149948751|gb|ABR47279.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
metalliredigens QYMF]
Length = 194
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G IN + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIFSRLLKERIIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V T+C G+AAS A +LA G KG R+A+PNA +M++QP G+ G ED++
Sbjct: 79 DTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRGQAEDIRI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
V R L+ T
Sbjct: 139 HAERIVKLRDTLNKILVERT 158
>gi|149911805|ref|ZP_01900408.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
gi|149805105|gb|EDM65128.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
Length = 207
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVSAGMSIY 91
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LAGGEKG R+A+PNA+IM++QP G G D++
Sbjct: 92 DTMQFIKPNVSTICMGMAASMGAFLLAGGEKGKRHALPNAKIMIHQPLGGYQGQASDIEI 151
Query: 217 QVNEAVISRHVSLSFLLLHT 236
NE + ++ L HT
Sbjct: 152 HANEIIKTKRKLNEILAEHT 171
>gi|218247705|ref|YP_002373076.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8801]
gi|257060958|ref|YP_003138846.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8802]
gi|218168183|gb|ACK66920.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8801]
gi|256591124|gb|ACV02011.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8802]
Length = 229
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 88/141 (62%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RI+F+G P++ VA ++QL+ L D + DI +Y+N PGGS+Y+ LAI
Sbjct: 41 FDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAI 100
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+CFG+AAS A +L GG G R A+P++RIM++QP G+ G +++
Sbjct: 101 YDTMQQIRPDVATICFGLAASMGAFLLCGGAPGKRMALPSSRIMIHQPLGGAQGQAVEIE 160
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 161 IQAKEILYIKRRLNEMLASHT 181
>gi|423018592|ref|ZP_17009313.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans AXX-A]
gi|338778354|gb|EGP42829.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans AXX-A]
Length = 217
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>gi|88809960|ref|ZP_01125465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 7805]
gi|88786150|gb|EAR17312.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 7805]
Length = 229
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P ++P V+ G D+ S L R RIIF+G ++ VA ++QL+ L D + DI
Sbjct: 28 PGVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQLLFLEAEDPEKDI 87
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 88 QVYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 147
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + + HT
Sbjct: 148 MIHQPMGGAQGQAVDIEIQAKEILFLKETLNGLMAEHT 185
>gi|374849800|dbj|BAL52805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [uncultured
prokaryote]
Length = 201
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+PI+ VA I++L+ L D D DI MY+N PGG + + LAIY
Sbjct: 25 DIYSRLLKDRIIFLGEPIDDQVANLVIAELLFLEKEDPDKDIDMYINTPGGIVSAGLAIY 84
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M IKP V T+C G AAS A++LAGG G RYA+P+ARIM++Q +G G D++
Sbjct: 85 DTMQAIKPDVATICVGQAASMGAVLLAGGTPGKRYALPHARIMIHQVHAGFQGTAIDIEI 144
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + + + + L HT
Sbjct: 145 QAREVLRYKDILNNILHKHT 164
>gi|308271899|emb|CBX28507.1| ATP-dependent Clp protease proteolytic subunit [uncultured
Desulfobacterium sp.]
Length = 206
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 4/160 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ D+ S L ++RIIF+G +N VA I+QL+ L + D D DI
Sbjct: 2 PLIPMVIEQSSRGERAYDIYSRLLKDRIIFLGTAMNDEVANLLIAQLLFLESEDPDKDIN 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
Y+N PGG + S LA+YD M +IK + TVC G AAS A++L G KG RYA+PNARI+
Sbjct: 62 FYINSPGGVVTSGLAVYDTMQYIKSDIATVCIGQAASMGALLLTAGAKGKRYALPNARIL 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
++QP G G D+ Q E + + L HT D
Sbjct: 122 IHQPMGGFQGQASDIAIQAREILRMKDTLNDILTFHTGKD 161
>gi|218779308|ref|YP_002430626.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfatibacillum alkenivorans AK-01]
gi|259585946|sp|B8FA62.1|CLPP_DESAA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|218760692|gb|ACL03158.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfatibacillum alkenivorans AK-01]
Length = 201
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N +VA I+QL+ L + D + DI Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTEVNDVVANSIIAQLLFLESDDPEKDINFYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP++ TVC G AAS A++LA G G RY++PNARI+++QP G G D+
Sbjct: 79 DTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARILIHQPMGGFQGQASDIAI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 139 QAQEILRMKEALNEILASHT 158
>gi|33241265|ref|NP_876207.1| protease subunit of ATP-dependent Clp protease [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|67460520|sp|Q7V9L6.1|CLPP3_PROMA RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|33238795|gb|AAQ00860.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 216
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P ++P V+ G D+ S L R RIIF+G +N +A ++Q++ L D + DI
Sbjct: 23 PGVLPTVIEQSGRGERAFDIYSRLLRERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDI 82
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P + T+C+G+AAS A +LAGG KG R A+PN+RI
Sbjct: 83 QLYINSPGGSVTAGLAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRI 142
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G +++ Q E + + + L HT
Sbjct: 143 MIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHT 180
>gi|149923964|ref|ZP_01912350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Plesiocystis
pacifica SIR-1]
gi|149815196|gb|EDM74745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Plesiocystis
pacifica SIR-1]
Length = 217
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PIN VA I+QL+ L + D D DI +Y+N PGG + + L IY
Sbjct: 28 DIYSRLLKDRIVFLGDPINDRVASIIIAQLLFLESEDPDKDIRLYINSPGGVVTAGLGIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ V T C G AAS A +LAGG KG R+A+PNARIM++QP G+ G D++
Sbjct: 88 DTMQYVRCDVATYCLGQAASMGAFLLAGGAKGKRFALPNARIMIHQPHGGASGQATDIEI 147
Query: 217 QVNE 220
Q E
Sbjct: 148 QARE 151
>gi|307244056|ref|ZP_07526175.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Peptostreptococcus stomatis DSM 17678]
gi|306492580|gb|EFM64614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Peptostreptococcus stomatis DSM 17678]
Length = 194
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G +N A ++QL+ L D D DI +
Sbjct: 3 LVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDATASLVVAQLLFLEADDPDKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +LA G KG RYA+PN+ IM+
Sbjct: 63 YINSPGGSVTAGLAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSTIMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP GS G DV+
Sbjct: 123 HQPLGGSRGQATDVE 137
>gi|258511812|ref|YP_003185246.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|384135662|ref|YP_005518376.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|257478538|gb|ACV58857.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|339289747|gb|AEJ43857.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 198
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ +G PI+ VA ++QL+ LA D + DI MY+N PGGS+ + +AIY
Sbjct: 20 DIYSRLLKDRIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMYINSPGGSVTAGMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M I+P V T+C G+AAS A +LA GEKG RYA+PNA IM++QP G G D+K
Sbjct: 80 DTMQHIRPAVSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLGGVEGQASDIK 138
>gi|221633185|ref|YP_002522410.1| Clp protease [Thermomicrobium roseum DSM 5159]
gi|221155739|gb|ACM04866.1| Clp protease [Thermomicrobium roseum DSM 5159]
Length = 205
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R+RIIF+G PI+ VA I+Q++ LA + +ADI +Y+N PGG +Y+ LAIY
Sbjct: 26 DIYSRLLRDRIIFLGTPIDDQVANAVIAQMLFLAHENPEADIKLYINSPGGLVYAGLAIY 85
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M I+P V T C G+ AS AA++LA G KG R+A+P++R++++Q SG G V D++
Sbjct: 86 DTMQMIEPDVATYCVGLGASMAAVLLAAGTKGKRFALPHSRVLIHQGTSGFRGSVPDIEI 145
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 146 QARETLNLTTMLTELLAFHT 165
>gi|255557703|ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
gi|223540927|gb|EEF42485.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
Length = 294
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 84/137 (61%)
Query: 84 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 143
P PA G D +L R RI+F+G I+ VA ISQL+ L D DI +++N
Sbjct: 68 PQTPATAMRGAESDAMGLLLRERIVFLGNNIDDFVADATISQLLLLDAQDPTKDIRLFIN 127
Query: 144 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 203
CPGGS+ + +AIYD + ++ V TV G++AS A+IIL GG KG R+AMPN RIM++QP
Sbjct: 128 CPGGSLSATMAIYDVVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMVHQP 187
Query: 204 QSGSGGHVEDVKRQVNE 220
G+ G DV+ Q E
Sbjct: 188 LGGASGQAIDVEIQARE 204
>gi|218290814|ref|ZP_03494883.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius LAA1]
gi|218239172|gb|EED06373.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus acidocaldarius LAA1]
Length = 198
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ +G PI+ VA ++QL+ LA D + DI MY+N PGGS+ + +AIY
Sbjct: 20 DIYSRLLKDRIVILGTPIDDQVANSIVAQLLFLAADDPEKDIQMYINSPGGSVTAGMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M I+P V T+C G+AAS A +LA GEKG RYA+PNA IM++QP G G D+K
Sbjct: 80 DTMQHIRPAVSTLCIGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLGGVEGQASDIK 138
>gi|72383092|ref|YP_292447.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. NATL2A]
gi|115311351|sp|Q46ID4.1|CLPP3_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|72002942|gb|AAZ58744.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. NATL2A]
Length = 194
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G +N VA ++Q++ L D + DI +
Sbjct: 1 MLPTVIEQSGQGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PN+RIM+
Sbjct: 61 YVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G +++ Q E + + S L HT
Sbjct: 121 HQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHT 156
>gi|389578265|ref|ZP_10168292.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfobacter
postgatei 2ac9]
gi|389399900|gb|EIM62122.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfobacter
postgatei 2ac9]
Length = 208
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ D+ S L ++RIIF+G I+ VA ++Q++ L + D D DI
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAIDDEVANLIVAQMLFLESEDPDKDIN 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
Y+N PGG + + +AIYD + +IKP V TVC G AAS A++L G G R+A+PNARIM
Sbjct: 62 FYINSPGGVVTAGMAIYDTIQYIKPDVATVCIGQAASMGALLLTAGTAGKRFALPNARIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D+K Q E + + V L HT
Sbjct: 122 IHQPMGGAQGQATDIKIQATEILRMKDVLNEILSKHT 158
>gi|195952528|ref|YP_002120818.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobaculum sp. Y04AAS1]
gi|195932140|gb|ACG56840.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobaculum sp. Y04AAS1]
Length = 205
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 92/143 (64%), Gaps = 11/143 (7%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L D + DI M
Sbjct: 14 LVPIVVEQTPRGERAYDIYSRLLQDRIVILGFPIDDHVANLIVAQLLFLEAQDPEKDIQM 73
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G AAS A++LA G KG R+A+PNARIM+
Sbjct: 74 YINSPGGSVTAGLAIYDTMQYIKPDVTTICIGQAASMGAVLLAAGTKGKRFALPNARIMI 133
Query: 201 NQPQSGSGG-------HVEDVKR 216
+QP G G H E++KR
Sbjct: 134 HQPLGGVQGQATDILIHAEEIKR 156
>gi|296134054|ref|YP_003641301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
potens JR]
gi|296032632|gb|ADG83400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
potens JR]
Length = 194
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI+ MVA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 19 DIYSRLLKDRIIFIGGPIDDMVANLVIAQMLFLEAEDPDKDIHIYINSPGGVVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS + +LA G KG RYA+P RIM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICMGQAASMGSFLLAAGTKGKRYALPYTRIMIHQPLGGVQGQATDIDI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + + V L HT
Sbjct: 139 HAKEILRMKSVLNELLAKHT 158
>gi|452943368|ref|YP_007499533.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobaculum sp. HO]
gi|452881786|gb|AGG14490.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobaculum sp. HO]
Length = 205
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 92/143 (64%), Gaps = 11/143 (7%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L D + DI M
Sbjct: 14 LVPIVVEQTPRGERAYDIYSRLLQDRIVILGFPIDDHVANLIVAQLLFLEAQDPEKDIQM 73
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G AAS A++LA G KG R+A+PNARIM+
Sbjct: 74 YINSPGGSVTAGLAIYDTMQYIKPDVTTICIGQAASMGAVLLAAGAKGKRFALPNARIMI 133
Query: 201 NQPQSGSGG-------HVEDVKR 216
+QP G G H E++KR
Sbjct: 134 HQPLGGVQGQATDILIHAEEIKR 156
>gi|421872665|ref|ZP_16304283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
laterosporus GI-9]
gi|372458638|emb|CCF13832.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
laterosporus GI-9]
Length = 193
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PIN VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTPINDQVANSVVAQLLFLQAEDPDKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS + +L G KG RYA+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGLAASMGSFLLCAGAKGKRYALPNSEIMIHQPLGGAQGQASDIE 137
>gi|339007073|ref|ZP_08639648.1| ATP-dependent Clp protease proteolytic subunit 1 [Brevibacillus
laterosporus LMG 15441]
gi|338776282|gb|EGP35810.1| ATP-dependent Clp protease proteolytic subunit 1 [Brevibacillus
laterosporus LMG 15441]
Length = 195
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PIN VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTPINDQVANSVVAQLLFLQAEDPDKDISIYINSPGGSITAGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS + +L G KG RYA+PN+ IM++QP G+ G D++
Sbjct: 81 DTMQYIKPDVSTICVGLAASMGSFLLCAGAKGKRYALPNSEIMIHQPLGGAQGQASDIE 139
>gi|422320060|ref|ZP_16401128.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans C54]
gi|317405213|gb|EFV85552.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans C54]
Length = 217
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>gi|206896158|ref|YP_002247153.1| Clp protease [Coprothermobacter proteolyticus DSM 5265]
gi|206738775|gb|ACI17853.1| Clp protease [Coprothermobacter proteolyticus DSM 5265]
Length = 199
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 95/157 (60%), Gaps = 4/157 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ TP G D+ S L R+RI+FI I +A I+QL+ L D DI
Sbjct: 3 PLIPYVIEQTPRGERGYDIYSRLLRDRIVFINGEIEPEMAGVVIAQLLFLEAEDPKRDIY 62
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGG + LAIYD M +I+P V T+C G AAS AAI+LA G KG R+A+PN+RI+
Sbjct: 63 VYINSPGGIVTDGLAIYDTMQYIEPDVVTMCIGQAASMAAILLAAGTKGKRFALPNSRIL 122
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
L+QP G G V DV+ Q E V + L +HT
Sbjct: 123 LHQPMGGVQGQVTDVEIQAKELVRIKQRINEILSVHT 159
>gi|295111709|emb|CBL28459.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synergistetes
bacterium SGP1]
Length = 184
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S LF +RI+F+G PI+ VA ++QL+ LA DE +I +Y+N PGGS+ + LAIY
Sbjct: 11 DVYSCLFEDRIVFLGSPIDDAVANGIVAQLLLLANRDEKKEISLYINSPGGSVSAGLAIY 70
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++ V T C G AAS A++LA G KG R A+P+A++ML+QP G+GG DV
Sbjct: 71 DTMQFVPCPVATTCIGQAASMGAVLLAAGAKGRRSALPHAKVMLHQPLGGAGGQASDVAL 130
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + +R V + + HT
Sbjct: 131 FAQELIKTREVLNALIAHHT 150
>gi|297583414|ref|YP_003699194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
selenitireducens MLS10]
gi|297141871|gb|ADH98628.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
selenitireducens MLS10]
Length = 197
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ VA ++QL+ LA D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTPIDDNVANSIVAQLLFLAADDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +L GE G RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPKVQTICIGMAASMGAFLLTAGEPGKRYALPNSEVMIHQPLGGAQGQASDIE 137
>gi|33862335|ref|NP_893895.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9313]
gi|67460519|sp|Q7V992.1|CLPP1_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|33640448|emb|CAE20237.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9313]
Length = 224
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
+P ++P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + D
Sbjct: 22 SPGILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKD 81
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L GG KG R A+PNAR
Sbjct: 82 IQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNAR 141
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
IM++QP G+ G D++ Q E + + L HT
Sbjct: 142 IMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHT 180
>gi|333370325|ref|ZP_08462336.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437]
gi|332978057|gb|EGK14795.1| ATP-dependent Clp protease, protease subunit [Desmospora sp. 8437]
Length = 201
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
DL S L ++RIIFIG PI+ VA ++Q++ LA D D +I +Y+N PGGSI + +AIY
Sbjct: 27 DLYSRLLKDRIIFIGSPIDDSVANSVMAQMLFLAADDPDKEISLYINSPGGSITAGMAIY 86
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G G D++
Sbjct: 87 DTMQYIKPDVSTICVGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGVRGQAADIQ 145
>gi|335041121|ref|ZP_08534237.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
gi|334178919|gb|EGL81568.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
Length = 196
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+QL+ LA D + D+ +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGTPIDDHVANSVIAQLLFLAAEDPEKDVSLYINSPGGSVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS + +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVSTICVGLAASMGSFLLAAGAKGKRFALPNSEIMMHQPLGGVKGQAADIK 137
>gi|296136117|ref|YP_003643359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
intermedia K12]
gi|295796239|gb|ADG31029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
intermedia K12]
Length = 202
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 93/149 (62%), Gaps = 4/149 (2%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L R R+IF+ PIN +A ++QL+ L + + D D
Sbjct: 8 NLGLVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKD 67
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGGS+ + +AI+D M +IKP V T+C G+AAS A ++A G KG RY++PN+R
Sbjct: 68 ISLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSR 127
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
IM++QP G+ G D++ Q E + R
Sbjct: 128 IMIHQPSGGAQGQATDIEIQAREILYLRE 156
>gi|138896648|ref|YP_001127101.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus
thermodenitrificans NG80-2]
gi|196249350|ref|ZP_03148048.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. G11MC16]
gi|166201825|sp|A4ISQ2.1|CLPP_GEOTN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|134268161|gb|ABO68356.1| ATP-dependent Clp protease [Geobacillus thermodenitrificans NG80-2]
gi|196211107|gb|EDY05868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. G11MC16]
Length = 196
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|297531315|ref|YP_003672590.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
sp. C56-T3]
gi|297254567|gb|ADI28013.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. C56-T3]
Length = 196
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIE 137
>gi|365873788|ref|ZP_09413321.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio velox DSM 12556]
gi|363983875|gb|EHM10082.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio velox DSM 12556]
Length = 194
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIFIGQ I+ +A ++QL+ L + D D D+ +
Sbjct: 4 LIPYVIEQTGRGERSYDIYSRLLKDRIIFIGQEIDDHLANLVVAQLLFLESEDPDKDVYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + LAIYD M +IK V T+C G AAS AA++LA GE+G R ++P++RIM+
Sbjct: 64 YINSPGGVVTAGLAIYDTMQYIKCPVSTICTGQAASMAAVLLAAGERGKRISLPHSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + S L HT
Sbjct: 124 HQPLGGAQGQASDIEIQAREILRVKEILNSILSNHT 159
>gi|188585728|ref|YP_001917273.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|259585960|sp|B2A158.1|CLPP_NATTJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|179350415|gb|ACB84685.1| ATP-dependent Clp protease proteolytic subunit ClpP [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 197
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG IN +A I+Q++ L + D D DI +Y+N PGG +++ LAIY
Sbjct: 19 DIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPGGHVHAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+ V T+C G+AAS A++LA G +G R+ +PN+RIML+QP G+ G DV+
Sbjct: 79 DTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + ++ L HT
Sbjct: 139 HAREIMKTKERLNQILAHHT 158
>gi|311743054|ref|ZP_07716862.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
marinum DSM 15272]
gi|311313734|gb|EFQ83643.1| ATP-dependent Clp protease proteolytic subunit [Aeromicrobium
marinum DSM 15272]
Length = 200
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D + LF +RIIF+G PI+ VA I+QL+ L ++ D DI +Y+N PGGS ++ AI
Sbjct: 19 IDPYAKLFEDRIIFLGTPISDDVANAVIAQLLCLQVMEPDRDISIYINSPGGSFTAMTAI 78
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS-GSGGHVEDV 214
YD M ++KP V T C G AAS AA++L G G R+A+PNARI+++QP + G+GG + D+
Sbjct: 79 YDTMRYLKPDVQTFCLGQAASAAAVLLGAGTPGKRFALPNARILIHQPYTEGTGGQISDL 138
Query: 215 KRQVNEAVISRHVSLSFLLLHT 236
+ Q NE I R SL ++ T
Sbjct: 139 EIQANE--IMRMRSLMEQMIST 158
>gi|85859380|ref|YP_461582.1| ATP-dependent Clp protease proteolytic subunit [Syntrophus
aciditrophicus SB]
gi|108935920|sp|Q2LTK5.1|CLPP_SYNAS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|85722471|gb|ABC77414.1| ATP-dependent Clp protease proteolytic subunit [Syntrophus
aciditrophicus SB]
Length = 194
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 5/158 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G PI+ VA I+QL+ L + D D +I
Sbjct: 3 LIPMVVQQDGRGERAYDIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFF 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGG I S +AIYD M +IKP V TVC G AAS A++LA GE+G R A+P++RI++
Sbjct: 63 YLNTPGGHISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLN 238
+QP G G D+ Q E ++ LS +L N
Sbjct: 123 HQPLGGFQGQATDIDIQARE-ILRLKDELSLILADLTN 159
>gi|410693928|ref|YP_003624550.1| ATP-dependent Clp protease proteolytic subunit precursor
(Endopeptidase Clp) (Caseinolytic protease) (Protease
Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As]
gi|294340353|emb|CAZ88734.1| ATP-dependent Clp protease proteolytic subunit precursor
(Endopeptidase Clp) (Caseinolytic protease) (Protease
Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As]
Length = 202
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 93/149 (62%), Gaps = 4/149 (2%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L R R+IF+ PIN +A ++QL+ L + + D D
Sbjct: 8 NLGLVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKD 67
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGGS+ + +AI+D M +IKP V T+C G+AAS A ++A G KG RY++PN+R
Sbjct: 68 ISLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSR 127
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
IM++QP G+ G D++ Q E + R
Sbjct: 128 IMIHQPSGGAQGQATDIEIQAREILYLRE 156
>gi|119510658|ref|ZP_01629787.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
gi|119464709|gb|EAW45617.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
Length = 210
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 96/155 (61%), Gaps = 5/155 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 7 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDTVANSIVAQLLFLDAEDSEKDIQI 66
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD M I+P V T+CFG+AAS A +LA G G R ++P++RIM+
Sbjct: 67 YINSPGGSVYAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLAAGSAGKRMSLPDSRIMI 126
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
+QP G+ G D++ Q E ++ L+ LL H
Sbjct: 127 HQPLGGAQGQAIDIEIQARE-ILYVKAKLNQLLGH 160
>gi|145219256|ref|YP_001129965.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
phaeovibrioides DSM 265]
gi|189082462|sp|A4SDA4.1|CLPP_PROVI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|145205420|gb|ABP36463.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
phaeovibrioides DSM 265]
Length = 225
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 7/182 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHASKLYSGAIEEGIQNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D D DI +Y+N PGGS+ + L IYD M +I+P V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPDRDIFIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTL 237
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R + + HT
Sbjct: 125 GAFLLASGAKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEIMAKHTG 184
Query: 238 ND 239
D
Sbjct: 185 KD 186
>gi|124021784|ref|YP_001016091.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9303]
gi|123962070|gb|ABM76826.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9303]
Length = 224
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
+P ++P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + D
Sbjct: 22 SPGILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKD 81
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L GG KG R A+PNAR
Sbjct: 82 IQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNAR 141
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
IM++QP G+ G D++ Q E + + L HT
Sbjct: 142 IMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHT 180
>gi|398814906|ref|ZP_10573583.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
gi|398035724|gb|EJL28955.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
Length = 200
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PIN VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDIHLYINSPGGSITAGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G D++
Sbjct: 81 DTMHFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQASDIE 139
>gi|148238406|ref|YP_001223793.1| protease subunit of ATP-dependent Clp protease [Synechococcus sp.
WH 7803]
gi|147846945|emb|CAK22496.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
WH 7803]
Length = 229
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P ++P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 28 PGVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 87
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 88 QVYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 147
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + + HT
Sbjct: 148 MIHQPMGGAQGQAVDIEIQAKEILFLKETLNGLMAEHT 185
>gi|158321199|ref|YP_001513706.1| ATP-dependent Clp protease proteolytic subunit [Alkaliphilus
oremlandii OhILAs]
gi|167008645|sp|A8MIS8.1|CLPP_ALKOO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|158141398|gb|ABW19710.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alkaliphilus
oremlandii OhILAs]
Length = 195
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKERIIFLSDEVNDATASLVVAQLLFLESEDPDKDIQLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKP V T+C G+AAS A +L G+KG R+A+PNA IM++QP G+ G ED++
Sbjct: 79 DTMNYIKPDVSTICIGMAASMGAFLLTAGQKGKRFALPNAEIMIHQPLGGTRGQAEDIR 137
>gi|226314841|ref|YP_002774737.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
gi|226097791|dbj|BAH46233.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
Length = 198
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PIN VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTPINDTVANIVVAQLLFLQAEDPEKDIHLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G D++
Sbjct: 79 DTMHFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQASDIE 137
>gi|114567171|ref|YP_754325.1| ATP-dependent Clp protease proteolytic subunit [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|122317850|sp|Q0AWF0.1|CLPP_SYNWW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|114338106|gb|ABI68954.1| ATP-dependent Clp protease proteolytic subunit ClpP [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 200
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA I+QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 20 DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D + +I+P V T+C G+AAS A +LA G+KG RYA+PNA IM++QP G+ G D++
Sbjct: 80 DTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIE 138
>gi|397691263|ref|YP_006528517.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Melioribacter
roseus P3M]
gi|395812755|gb|AFN75504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Melioribacter
roseus P3M]
Length = 222
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 5/157 (3%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G +D+ S L R RI+F+G I+ +A I+QL+ L D D DI +
Sbjct: 21 LVPYVIEQTGRGERGMDIFSRLLRERIVFLGTAIDDHIASLIIAQLLFLEAEDPDKDIYL 80
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +I+ KV T+C G+AAS A++LAGGE G R A+P+++IM+
Sbjct: 81 YINSPGGSVSAGLAIYDTMKYIRSKVSTICVGLAASMGAVLLAGGEAGKRSALPHSKIMI 140
Query: 201 NQPQSGS-GGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ E + +R L HT
Sbjct: 141 HQPWVGGLQGQTTDIEIHAKEMIKTRDTIYKILAEHT 177
>gi|189345948|ref|YP_001942477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
limicola DSM 245]
gi|189340095|gb|ACD89498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
limicola DSM 245]
Length = 225
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 7/182 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFDHHARKLYSGAIEEGIRNTLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P + TVC G+AAS
Sbjct: 65 VAGLVMAQLIFLESEDPERDIFIYINSPGGSVSAGLGIYDTMQYIRPDIATVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTL 237
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R + L HT
Sbjct: 125 GAFLLASGTKGKRASLPHSRIMIHQPSGGAQGQETDIIIQAREIEKIRKLLEELLAKHTG 184
Query: 238 ND 239
D
Sbjct: 185 RD 186
>gi|452125564|ref|ZP_21938148.1| ATP-dependent Clp protease proteolytic subunit [Bordetella holmesii
F627]
gi|451924794|gb|EMD74935.1| ATP-dependent Clp protease proteolytic subunit [Bordetella holmesii
F627]
Length = 217
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +LA G+KG R+++PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAKEILDLRE 169
>gi|334139130|ref|ZP_08512526.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF7]
gi|333603020|gb|EGL14444.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF7]
Length = 200
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
+P V+ P D+ S L ++RIIF+G P+N VA I+QL+ L D D DI +
Sbjct: 3 FIPMVVEPDARGERAYDIYSRLLKDRIIFLGTPVNDQVANAIIAQLLFLDAQDPDKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI + +AIYD M +IK V T+C G+AAS A +LA G KG RYA+PN+ +M+
Sbjct: 63 YINSPGGSITAGMAIYDTMQFIKSDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G D++
Sbjct: 123 HQPLGGAEGQATDIE 137
>gi|225848210|ref|YP_002728373.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225644423|gb|ACN99473.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 202
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RII +G PI+ VA ++QL+ L D + DI M
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHVANLIVAQLLFLEAEDPEKDIYM 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + AIYD M++IKP V T+C G AAS A +L+ G KG RY++PNARIM+
Sbjct: 68 YINSPGGVVTAGFAIYDTMNYIKPDVVTICIGQAASMGAFLLSAGAKGKRYSLPNARIMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ E + + + +L HT
Sbjct: 128 HQPLGGFQGQATDIEIHAREILRLKRMLNEYLAKHT 163
>gi|33592842|ref|NP_880486.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis Tohama I]
gi|33596622|ref|NP_884265.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis 12822]
gi|33601237|ref|NP_888797.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica RB50]
gi|384204141|ref|YP_005589880.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis CS]
gi|408415562|ref|YP_006626269.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis 18323]
gi|410420626|ref|YP_006901075.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica MO149]
gi|410472787|ref|YP_006896068.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis Bpp5]
gi|412337420|ref|YP_006966175.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 253]
gi|427815119|ref|ZP_18982183.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 1289]
gi|427819401|ref|ZP_18986464.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica D445]
gi|427821908|ref|ZP_18988970.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica Bbr77]
gi|67460369|sp|Q7VXI7.1|CLPP_BORPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460372|sp|Q7W8X2.1|CLPP_BORPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460374|sp|Q7WK83.1|CLPP_BORBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|33572490|emb|CAE42062.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis Tohama I]
gi|33573323|emb|CAE37306.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis]
gi|33575672|emb|CAE32750.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica RB50]
gi|332382255|gb|AEE67102.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis CS]
gi|401777732|emb|CCJ63063.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis 18323]
gi|408442897|emb|CCJ49464.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis Bpp5]
gi|408447921|emb|CCJ59598.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica MO149]
gi|408767254|emb|CCJ52000.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 253]
gi|410566119|emb|CCN23679.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 1289]
gi|410570401|emb|CCN18574.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica D445]
gi|410587173|emb|CCN02206.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica Bbr77]
Length = 217
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 85/130 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>gi|392955511|ref|ZP_10321042.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
macauensis ZFHKF-1]
gi|391878438|gb|EIT87027.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
macauensis ZFHKF-1]
Length = 197
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ LA D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLAAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKP V T+C G+AAS A +L+ GEKG RYA+PNA +M++QP G+ G D++
Sbjct: 79 DTMNFIKPNVSTICIGMAASMGAFLLSAGEKGKRYALPNAEVMIHQPLGGTQGQAADIE 137
>gi|291288695|ref|YP_003505511.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Denitrovibrio
acetiphilus DSM 12809]
gi|290885855|gb|ADD69555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Denitrovibrio
acetiphilus DSM 12809]
Length = 195
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 84/124 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G + S +A ++Q++ L + D D DI +Y+N PGGS+ LAI+
Sbjct: 20 DIYSRLLKDRIIFLGSQVESGIANSIVAQMLFLESDDPDKDIHLYINSPGGSVSDGLAIF 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS AA++LA G KG RYA+PNAR+M++Q G+ G D++
Sbjct: 80 DTMKYIKPDVSTICIGQAASMAAVLLAAGTKGKRYAVPNARVMIHQVMGGAQGQAADIEI 139
Query: 217 QVNE 220
Q E
Sbjct: 140 QAKE 143
>gi|94986250|ref|YP_605614.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
geothermalis DSM 11300]
gi|116243132|sp|Q1IWD9.1|CLPP_DEIGD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|94556531|gb|ABF46445.1| Endopeptidase Clp [Deinococcus geothermalis DSM 11300]
Length = 200
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI S +A ++QL+ L + + D +I MY+NCPGG +Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPDQEIQMYINCPGGEVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V T+C G+A S +++L G+KG R A+PN+RIM++Q +G G+ D++
Sbjct: 79 DTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRLALPNSRIMIHQGSAGFRGNTPDLEV 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + HT
Sbjct: 139 QAKEVLRLRDTLIDIYHRHT 158
>gi|337744565|ref|YP_004638727.1| protein ClpP1 [Paenibacillus mucilaginosus KNP414]
gi|379718194|ref|YP_005310325.1| protein ClpP1 [Paenibacillus mucilaginosus 3016]
gi|386720758|ref|YP_006187083.1| protein ClpP1 [Paenibacillus mucilaginosus K02]
gi|336295754|gb|AEI38857.1| ClpP1 [Paenibacillus mucilaginosus KNP414]
gi|378566866|gb|AFC27176.1| ClpP1 [Paenibacillus mucilaginosus 3016]
gi|384087882|gb|AFH59318.1| protein ClpP1 [Paenibacillus mucilaginosus K02]
Length = 193
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 87/135 (64%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
+P V+ P D+ S L ++RIIF+G IN +VA I+QL+ LA D D DI +
Sbjct: 3 FIPMVVEPDARGERAYDIYSRLLKDRIIFLGSGINDVVANSIIAQLLFLAASDPDKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI S +AIYD M +IKP V T+C G+AAS A +LA G G R+A+PN+ +M+
Sbjct: 63 YINSPGGSITSGMAIYDTMQFIKPDVSTICVGMAASMGAFLLAAGAPGKRFALPNSEVMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G D++
Sbjct: 123 HQPLGGAEGQASDIE 137
>gi|421484311|ref|ZP_15931882.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii HLE]
gi|400197520|gb|EJO30485.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii HLE]
Length = 217
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIF 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>gi|293606140|ref|ZP_06688505.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii ATCC 43553]
gi|292815595|gb|EFF74711.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii ATCC 43553]
Length = 217
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIF 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>gi|317968359|ref|ZP_07969749.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CB0205]
Length = 194
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI +
Sbjct: 1 MLPTVVEQSGRGDRAFDIYSRLLRERIIFLGSGIDDQVADAMVAQLLFLEAEDPEKDIQI 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARIM+
Sbjct: 61 YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + HT
Sbjct: 121 HQPLGGAQGQAVDIEIQAKEILYLKETLNGLMSEHT 156
>gi|145589117|ref|YP_001155714.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047523|gb|ABP34150.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 209
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R R++F+ +N A I+QL+ L + + D DI +
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVNDQTANLVIAQLLFLESENPDKDISL 77
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +L GEKG RYA+PN+R+M+
Sbjct: 78 YINSPGGSVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLCAGEKGKRYALPNSRVMI 137
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 138 HQPLGGARGQASDIEIQAREILYLRE 163
>gi|402312968|ref|ZP_10831891.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lachnospiraceae bacterium ICM7]
gi|404484025|ref|ZP_11019239.1| ATP-dependent Clp protease proteolytic subunit [Clostridiales
bacterium OBRC5-5]
gi|400367544|gb|EJP20560.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lachnospiraceae bacterium ICM7]
gi|404342705|gb|EJZ69075.1| ATP-dependent Clp protease proteolytic subunit [Clostridiales
bacterium OBRC5-5]
Length = 193
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L ++RIIF+G+ +N + A ++Q++ L + D DI +Y+N PGGS+ + +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDINLYINSPGGSVVAGMAI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++K V T+C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G D+K
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMGAFLLAGGTKGKRYALPNAEIMIHQPSGGAQGQASDIK 137
Query: 216 RQVNEAVISRHVSLSFLLLHTLN 238
V E ++ L+ +L N
Sbjct: 138 I-VAEQILKTKQKLNKILAENTN 159
>gi|152980689|ref|YP_001353221.1| ATP-dependent Clp protease proteolytic subunit [Janthinobacterium
sp. Marseille]
gi|226706516|sp|A6SY74.1|CLPP_JANMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|151280766|gb|ABR89176.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium
sp. Marseille]
Length = 210
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +
Sbjct: 19 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKDISL 78
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA GEKG R+++PN+RIM+
Sbjct: 79 YINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMI 138
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 139 HQPLGGAQGQASDIEIQAREILYLRE 164
>gi|238060619|ref|ZP_04605328.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
gi|237882430|gb|EEP71258.1| endopeptidase Clp [Micromonospora sp. ATCC 39149]
Length = 213
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 84/135 (62%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
L + RIIF+G +N VA R +QL+ LA D D DI +++N PGGS+YS +AIYD M +
Sbjct: 33 LLKERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYDTMQY 92
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
I V TV G+AAS ++L G KG RYA+P+ARIM++QP G GG D+ Q +
Sbjct: 93 IDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGMGGTASDIAIQAEQM 152
Query: 222 VISRHVSLSFLLLHT 236
+ ++ + + HT
Sbjct: 153 LYTKRMFQERVAFHT 167
>gi|254421271|ref|ZP_05034989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7335]
gi|196188760|gb|EDX83724.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7335]
Length = 269
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G P+ +A ++QL+ L D + D+ +
Sbjct: 68 MLPMVVEQSGRGERAFDIYSRLLRERIVFLGTPVMDDIADSIVAQLLFLDAEDPEKDVQL 127
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M I+P V T+CFG+AAS A +L+GG KG R ++P+ARIM+
Sbjct: 128 YINSPGGSVTAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMSLPSARIMI 187
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + L HT D
Sbjct: 188 HQPSGGAQGQSADIEIQAREILYLKKRLNEMLADHTGQD 226
>gi|163857103|ref|YP_001631401.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii
DSM 12804]
gi|226706441|sp|A9IR54.1|CLPP_BORPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|163260831|emb|CAP43133.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii]
Length = 217
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>gi|78779134|ref|YP_397246.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9312]
gi|115311341|sp|Q31BD5.1|CLPP1_PROM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|78712633|gb|ABB49810.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9312]
Length = 195
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D D DI M
Sbjct: 1 MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|404330109|ref|ZP_10970557.1| ATP-dependent Clp protease proteolytic subunit [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 194
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ D+ S L ++RII +G I+ VA ++QL+ LA D + DI
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANAVVAQLLFLAAEDSEKDIS 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGSI + +AIYD M +IKPKV T+C G+AAS + +L GEKG RYA+PN+ IM
Sbjct: 62 LYINSPGGSITAGMAIYDTMQYIKPKVSTICIGMAASMGSFLLMAGEKGKRYALPNSEIM 121
Query: 200 LNQPQSGSGGHVEDVK 215
++QP G G D++
Sbjct: 122 IHQPSGGMQGQASDME 137
>gi|123968338|ref|YP_001009196.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. AS9601]
gi|123198448|gb|ABM70089.1| Clp protease subunit [Prochlorococcus marinus str. AS9601]
Length = 195
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D D DI M
Sbjct: 1 MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|78183646|ref|YP_376080.1| peptidase S14, ClpP [Synechococcus sp. CC9902]
gi|124013821|sp|Q3B0U1.1|CLPP2_SYNS9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|78167940|gb|ABB25037.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CC9902]
Length = 207
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 6 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 65
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 66 QIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 125
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + L HT
Sbjct: 126 MIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHT 163
>gi|345017119|ref|YP_004819472.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344032462|gb|AEM78188.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 195
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIK 137
>gi|357112555|ref|XP_003558074.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5,
chloroplastic-like [Brachypodium distachyon]
Length = 282
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 90/137 (65%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF++RII G P+ +A ++QL+ L ID + DI+MY+N PGGS+ + +AI+D M
Sbjct: 100 SQLFQHRIIRCGGPVEDDMANVIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTM 159
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 160 KHIRPDVSTVCIGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 219
Query: 220 EAVISRHVSLSFLLLHT 236
E + + +L HT
Sbjct: 220 EMLHHKANLNGYLAYHT 236
>gi|87301613|ref|ZP_01084453.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
gi|87283830|gb|EAQ75784.1| Clp protease proteolytic subunit [Synechococcus sp. WH 5701]
Length = 213
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 4/170 (2%)
Query: 71 HSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQL 126
S+ I + +P ++P V+ G D+ S L R RIIF+G I+ VA ++QL
Sbjct: 6 RSHPIHNSWQASPGVLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADSLVAQL 65
Query: 127 VTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 186
+ L D + DI +Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG
Sbjct: 66 LFLEAEDPEKDIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGT 125
Query: 187 KGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
KG R A+P+ARIM++QP G+ G D++ Q E + + + HT
Sbjct: 126 KGKRMALPSARIMIHQPLGGAQGQAVDIEIQAKEILFLKDTLNGLMAEHT 175
>gi|326391008|ref|ZP_08212557.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter ethanolicus JW 200]
gi|392940442|ref|ZP_10306086.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter siderophilus SR4]
gi|325992953|gb|EGD51396.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter ethanolicus JW 200]
gi|392292192|gb|EIW00636.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter siderophilus SR4]
Length = 195
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIK 137
>gi|229916596|ref|YP_002885242.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Exiguobacterium sp. AT1b]
gi|229468025|gb|ACQ69797.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Exiguobacterium sp. AT1b]
Length = 191
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RII +G I+ VA ++QL+ LA D + DI +
Sbjct: 2 LIPTVIEQTGRGERAYDIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLAAEDPEKDISL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI + +AIYD M++IKP V T+C G+AAS A +L GEKG R+A+PNA IM+
Sbjct: 62 YINSPGGSITAGMAIYDTMNFIKPNVSTICIGMAASMGAFLLQAGEKGKRFALPNAEIMI 121
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D+K + R
Sbjct: 122 HQPLGGTQGQASDIKIHAERIIKMRE 147
>gi|318043033|ref|ZP_07974989.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CB0101]
Length = 194
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI +
Sbjct: 1 MLPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKDIQI 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARIM+
Sbjct: 61 YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + HT
Sbjct: 121 HQPLGGAQGQAVDIEIQAKEILYLKDTLNGLMAEHT 156
>gi|295695312|ref|YP_003588550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kyrpidia
tusciae DSM 2912]
gi|295410914|gb|ADG05406.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kyrpidia
tusciae DSM 2912]
Length = 196
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ +VA ++QL+ LA D+ DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTGIDDIVANLVVAQLLFLAAEDDKKDIRLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V TVC G+AAS A +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVSTVCIGMAASMGAFLLAAGTKGKRFALPNSEIMIHQPLGGVRGQAADIK 137
>gi|167038050|ref|YP_001665628.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040915|ref|YP_001663900.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
sp. X514]
gi|256752437|ref|ZP_05493296.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter ethanolicus CCSD1]
gi|300914951|ref|ZP_07132267.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X561]
gi|307723815|ref|YP_003903566.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X513]
gi|320116459|ref|YP_004186618.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|226706551|sp|B0KBA4.1|CLPP_THEP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706552|sp|B0K533.1|CLPP_THEPX RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166855155|gb|ABY93564.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X514]
gi|166856884|gb|ABY95292.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|256748706|gb|EEU61751.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter ethanolicus CCSD1]
gi|300889886|gb|EFK85032.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X561]
gi|307580876|gb|ADN54275.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter sp. X513]
gi|319929550|gb|ADV80235.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 195
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIK 137
>gi|344199551|ref|YP_004783877.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus
ferrivorans SS3]
gi|343774995|gb|AEM47551.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus
ferrivorans SS3]
Length = 214
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 88/143 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ + M+A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 34 DIYSRLLKERVIFMVGQVEDMMANLVVAQLLFLEAENPDKDIALYINSPGGSVTAGMAIY 93
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++PKV TVC G AAS A++LA G +G RYA+PNARIML+QP G G D++
Sbjct: 94 DTMQFVRPKVSTVCIGQAASMGAVLLAAGAEGKRYALPNARIMLHQPSGGFQGQAHDIEI 153
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + R L+ HT D
Sbjct: 154 HTKEILRIRERLNDILVHHTGQD 176
>gi|159904323|ref|YP_001551667.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9211]
gi|159889499|gb|ABX09713.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9211]
Length = 200
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P ++P V+ G D+ S L R RIIF+G +N VA ++Q++ L D + DI
Sbjct: 7 PGVLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEAEDPEKDI 66
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R ++PN+RI
Sbjct: 67 QLYINSPGGSVTAGLAIYDTMQQVTPDVVTICYGLAASMGAFLLSGGTKGKRVSLPNSRI 126
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G +++ Q E + + L HT
Sbjct: 127 MIHQPLGGAQGQAVEIEIQAKEILFLKETLNGLLSEHT 164
>gi|81301334|ref|YP_401542.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 7942]
gi|81170215|gb|ABB58555.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
elongatus PCC 7942]
Length = 244
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 45 SSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSS 100
SS L I +R L +D + + + I+G ++P V+ G D+ S
Sbjct: 7 SSHASLPIHSRRLAAGLDSR---WQQPQIQAIAGSQ---AIVPTVVEQSGRGERAFDIYS 60
Query: 101 VLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 160
L R RI+F+G ++ VA ++QL+ L D + DI +Y+N PGGS+ + +AIYD M
Sbjct: 61 RLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQ 120
Query: 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
+ P V T+CFG+AAS A +L+GG +G R A+P+ARIM++QP G+ G D++ Q E
Sbjct: 121 QVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQARE 180
Query: 221 AVISRHVSLSFLLLHT 236
+ + L HT
Sbjct: 181 ILYHKSTLNDLLAQHT 196
>gi|15606541|ref|NP_213921.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus
VF5]
gi|6225158|sp|O67357.1|CLPP_AQUAE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|2983755|gb|AAC07315.1| ATP-dependent Clp protease proteolytic subunit [Aquifex aeolicus
VF5]
Length = 201
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L + D D DI +
Sbjct: 10 LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYL 69
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G AAS AI+LA G G RYA+P++RIM+
Sbjct: 70 YINSPGGSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYALPHSRIMI 129
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ E + + + L HT
Sbjct: 130 HQPLGGIQGQATDIIIHAEEIKRIKEMLIDILAKHT 165
>gi|289577854|ref|YP_003476481.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermoanaerobacter italicus Ab9]
gi|297544142|ref|YP_003676444.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|289527567|gb|ADD01919.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter italicus Ab9]
gi|296841917|gb|ADH60433.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 195
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMHGQATDIK 137
>gi|428223754|ref|YP_007107851.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geitlerinema
sp. PCC 7407]
gi|427983655|gb|AFY64799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geitlerinema
sp. PCC 7407]
Length = 229
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 68 STEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAI 123
S+ ++ I +G ++ ++P V+ G D+ S L R RIIF+G P++ VA +
Sbjct: 12 SSLQAHNIYAGPSN---IVPMVVEQSGRGERAFDIYSRLLRERIIFLGTPVDDAVADSIV 68
Query: 124 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 183
+QL+ L D + DI +Y+N PGGS+ + +AIYD M ++P V T+CFG+AAS A +LA
Sbjct: 69 AQLLFLEADDPEKDIQIYINSPGGSVTAGMAIYDTMQQVRPDVVTICFGLAASMGAFLLA 128
Query: 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
G +G R ++PN+RIM++QP G+ G D++ Q E + + L HT
Sbjct: 129 SGARGKRLSLPNSRIMIHQPLGGAQGQAVDIEIQAREILYHKRRLNELLSHHT 181
>gi|302869360|ref|YP_003837997.1| endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
gi|315504165|ref|YP_004083052.1| endopeptidase clp [Micromonospora sp. L5]
gi|302572219|gb|ADL48421.1| Endopeptidase Clp [Micromonospora aurantiaca ATCC 27029]
gi|315410784|gb|ADU08901.1| Endopeptidase Clp [Micromonospora sp. L5]
Length = 213
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 84/135 (62%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
L + RIIF+G +N VA R +QL+ LA D D DI +++N PGGS+YS +AIYD M +
Sbjct: 33 LLKERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYDTMQY 92
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
I V TV G+AAS ++L G KG RYA+P+ARIM++QP G GG D+ Q +
Sbjct: 93 IDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGLGGTASDIAIQAEQM 152
Query: 222 VISRHVSLSFLLLHT 236
+ ++ + + HT
Sbjct: 153 LYTKRMFQERVAFHT 167
>gi|56751593|ref|YP_172294.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 6301]
gi|3023500|sp|O34125.1|CLPP2_SYNE7 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|67460442|sp|Q5N1P6.1|CLPP3_SYNP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|15620530|gb|AAL03914.1|U30252_2 ClpP2 [Synechococcus elongatus PCC 7942]
gi|2351823|gb|AAB68677.1| ATP-dependent Clp protease, proteolytic subunit [Synechococcus
elongatus PCC 7942]
gi|56686552|dbj|BAD79774.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 6301]
Length = 240
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 45 SSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSS 100
SS L I +R L +D + + + I+G ++P V+ G D+ S
Sbjct: 3 SSHASLPIHSRRLAAGLDSR---WQQPQIQAIAGSQ---AIVPTVVEQSGRGERAFDIYS 56
Query: 101 VLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 160
L R RI+F+G ++ VA ++QL+ L D + DI +Y+N PGGS+ + +AIYD M
Sbjct: 57 RLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQ 116
Query: 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
+ P V T+CFG+AAS A +L+GG +G R A+P+ARIM++QP G+ G D++ Q E
Sbjct: 117 QVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQARE 176
Query: 221 AVISRHVSLSFLLLHT 236
+ + L HT
Sbjct: 177 ILYHKSTLNDLLAQHT 192
>gi|183220373|ref|YP_001838369.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910487|ref|YP_001962042.1| ATP-dependent Clp protease proteolytic subunit [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167775163|gb|ABZ93464.1| Protease subunit of endopeptidase Clp [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167778795|gb|ABZ97093.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 200
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 88/140 (62%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L R+RIIF+G I+ A +QL+ L + D DI +Y+N PGG + S LAI
Sbjct: 19 MDVYSRLLRDRIIFLGAGIDDTYANAVCAQLLFLEAENPDRDIYLYINSPGGYVSSGLAI 78
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M IKP+V T+C G A+S AA++LAGG KG R A+PN RIM++QP G+GG D++
Sbjct: 79 YDTMQLIKPEVRTLCIGQASSMAALLLAGGAKGKRSALPNGRIMMHQPYGGAGGQASDIE 138
Query: 216 RQVNEAVISRHVSLSFLLLH 235
E + +++ + H
Sbjct: 139 ISAKEIIKTKNTLIDLYCKH 158
>gi|194337396|ref|YP_002019190.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309873|gb|ACF44573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelodictyon
phaeoclathratiforme BU-1]
Length = 225
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 103/182 (56%), Gaps = 7/182 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHARKMYSGAIEQGITNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P+V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPEVSTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTL 237
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R + L HT
Sbjct: 125 GAFLLASGAKGKRASLPHSRIMIHQPSGGAQGQESDIVIQAREIEKIRTLLEELLAKHTG 184
Query: 238 ND 239
D
Sbjct: 185 KD 186
>gi|339320059|ref|YP_004679754.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Midichloria mitochondrii IricVA]
gi|338226184|gb|AEI89068.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Midichloria mitochondrii IricVA]
Length = 216
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 89/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R+ I+F+ PI +A ++QL+ L + + D DI MY+N PGG + + ++I
Sbjct: 18 FDIYSRLLRDGIVFVNGPIEDNMAAIIVAQLLFLESENPDKDIYMYINSPGGVVTAGMSI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++KP+V TVC G A S +++LAGGE GMRY++PN+RIM++QP G G D++
Sbjct: 78 YDTMQYVKPRVATVCMGQACSMGSMLLAGGEPGMRYSLPNSRIMIHQPHGGYRGQATDIE 137
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
NE + +H + HT
Sbjct: 138 IHANEILRIKHNMNLLYVKHT 158
>gi|163781838|ref|ZP_02176838.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
128-5-R1-1]
gi|159883058|gb|EDP76562.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
128-5-R1-1]
Length = 201
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 99/156 (63%), Gaps = 15/156 (9%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L + D D DI +
Sbjct: 10 LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGFPIDDHVANLIVAQLLFLESQDPDKDIYL 69
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +A+YD M +IKP V T+C G AAS A++LA G KG RYA+P++RIM+
Sbjct: 70 YINSPGGSVTAGMAVYDTMQYIKPDVVTICIGQAASMGAVLLAAGAKGKRYALPHSRIMI 129
Query: 201 NQPQSGSGGHVED----------VKRQVNEAVISRH 226
+QP G G D +KR +NE ++++H
Sbjct: 130 HQPLGGIQGQATDIIIHAEEIKRIKRMLNE-ILAKH 164
>gi|434402424|ref|YP_007145309.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Cylindrospermum stagnale PCC 7417]
gi|428256679|gb|AFZ22629.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Cylindrospermum stagnale PCC 7417]
Length = 232
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANSIVAQLLFLDAEDSEKDIQL 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD M I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTMQQIRPNVVTICFGLAASMGAFLLTAGAAGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKAKLNQLLAQHT 184
>gi|365174864|ref|ZP_09362302.1| ATP-dependent Clp protease proteolytic subunit [Synergistes sp.
3_1_syn1]
gi|363613729|gb|EHL65234.1| ATP-dependent Clp protease proteolytic subunit [Synergistes sp.
3_1_syn1]
Length = 194
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++Q++ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 20 DIYSRLLKDRIIFLGTAIDDTVANLVVAQMLFLESEDPDKDISLYINSPGGSVSAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+P V T+C G+AAS A++L G G R A+PNA+IM++QP G G D++
Sbjct: 80 DTMQYIRPNVSTICLGMAASMGAVLLTAGADGKRLALPNAKIMIHQPMGGMQGQASDIEI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + +R L HT
Sbjct: 140 HAKEILKTREKLNEILAKHT 159
>gi|403380350|ref|ZP_10922407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JC66]
Length = 193
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 87/135 (64%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
+P V+ P D+ S L ++RIIF+G PIN VA I+QL+ L D++ DI +
Sbjct: 3 FIPMVVEPDARGERAYDIYSRLLKDRIIFLGTPINDQVANAVIAQLLFLDAQDQEKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI + +AI+D M +IK V T+C G+AAS A +LA GE G RYA+PN+ IM+
Sbjct: 63 YINSPGGSISAGMAIFDTMQFIKSDVSTICVGLAASMGAFLLAAGEIGKRYALPNSEIMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G D++
Sbjct: 123 HQPLGGAEGQASDIE 137
>gi|332296030|ref|YP_004437953.1| ATP-dependent Clp protease proteolytic subunit [Thermodesulfobium
narugense DSM 14796]
gi|332179133|gb|AEE14822.1| ATP-dependent Clp protease proteolytic subunit [Thermodesulfobium
narugense DSM 14796]
Length = 199
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L +RIIF+G IN VA ++Q++ L D + DI +Y+N PGG + + LAIY
Sbjct: 24 DIYSKLLNDRIIFLGTAINEDVANLVVAQMLFLEADDPNRDIYLYINSPGGIVTAGLAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+CFG AAS AA+ILA GE+G RY +PN+R++++QP G+ G D+
Sbjct: 84 DTMQYVKSPVNTICFGQAASMAAVILAAGERGKRYCLPNSRVLIHQPLGGAEGQATDIAI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 144 QAKEILKVKDTLNQILAKHT 163
>gi|452995870|emb|CCQ92258.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
ultunense Esp]
Length = 197
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ A ++QL+ LA D D DI +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIIVLGSEIDDANANLVVAQLLFLAAEDPDKDIYLYINSPGGSITAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G G ED++
Sbjct: 78 DTMQFIKPPVSTICIGIAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGVRGQAEDIR 136
>gi|423082887|ref|ZP_17071470.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 002-P50-2011]
gi|423086337|ref|ZP_17074746.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 050-P50-2011]
gi|357547206|gb|EHJ29100.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 002-P50-2011]
gi|357547324|gb|EHJ29214.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 050-P50-2011]
Length = 194
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 92/139 (66%), Gaps = 4/139 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIFIG+ IN +A ++QL+ L + D D+DI++
Sbjct: 3 LVPHVIEQTGQGERSYDIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDIII 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS + AIYD M++++ V T+C G+AAS +A +LAGG +G R A+PN+ IM+
Sbjct: 63 YINSPGGSTTAGFAIYDTMNYVRCDVSTICIGMAASMSAFLLAGGTRGKRCALPNSEIMI 122
Query: 201 NQPQSGSGGHVEDVKRQVN 219
+QP G+ G DVK V+
Sbjct: 123 HQPMGGAKGQATDVKIAVD 141
>gi|284044102|ref|YP_003394442.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
woesei DSM 14684]
gi|283948323|gb|ADB51067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
woesei DSM 14684]
Length = 194
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ T G D+ S L RIIF+G P++ +A ++QL+ L + D D DI
Sbjct: 3 PLVPMVVEQTSRGERAFDIYSRLLNERIIFLGTPVDDQIANLIVAQLLHLESEDPDKDIS 62
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGS+Y+ LAIYD M +IKP V T+C G+A S A++L+GG +G R A+PNA+I+
Sbjct: 63 IYINSPGGSVYAGLAIYDTMQFIKPDVQTICVGIAMSMGALLLSGGARGKRMALPNAKIL 122
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++Q S G D++ E + R + LH+
Sbjct: 123 IHQVSSSFQGQATDIEIHAREIIDIRRRLDEIIALHS 159
>gi|118482644|gb|ABK93241.1| unknown [Populus trichocarpa]
Length = 297
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 84/137 (61%)
Query: 84 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 143
P PA G D +L R RI+F+G I+ VA ISQL+ L D DI +++N
Sbjct: 71 PQTPATSMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVN 130
Query: 144 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 203
CPGGS+ + +AIYD + ++ V T+ G++AS A+IIL GG KG R+AMPN RIM++QP
Sbjct: 131 CPGGSLSASMAIYDVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIHQP 190
Query: 204 QSGSGGHVEDVKRQVNE 220
G+ G DV+ Q E
Sbjct: 191 LGGASGQAIDVEIQARE 207
>gi|148241165|ref|YP_001226322.1| protease subunit of ATP-dependent Clp protease [Synechococcus sp.
RCC307]
gi|147849475|emb|CAK26969.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
RCC307]
Length = 207
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+G I+ +A ++QL+ L D + +I +
Sbjct: 18 LVPTVVEQSGRGERAFDIYSRLLRERIIFLGTGIDDAIADAVVAQLLYLEAEDPEKEIQI 77
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARIM+
Sbjct: 78 YVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMI 137
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + + HT D
Sbjct: 138 HQPLGGAQGQAVDIEIQAKEILYLKETLNGLMASHTGQD 176
>gi|17231175|ref|NP_487723.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
7120]
gi|75909809|ref|YP_324105.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
variabilis ATCC 29413]
gi|21759070|sp|Q8YQX8.1|CLPP2_ANASP RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|17132816|dbj|BAB75382.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
7120]
gi|75703534|gb|ABA23210.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
variabilis ATCC 29413]
Length = 232
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQL 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G KG R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHT 184
>gi|312880128|ref|ZP_07739928.1| ATP-dependent Clp protease proteolytic subunit ClpP [Aminomonas
paucivorans DSM 12260]
gi|310783419|gb|EFQ23817.1| ATP-dependent Clp protease proteolytic subunit ClpP [Aminomonas
paucivorans DSM 12260]
Length = 201
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+F+G+ I +A ++QL+ L + D + D+ +
Sbjct: 11 LVPYVVEQTGRGERTYDIYSRLLKDRIVFLGEEIEEHMANLVVAQLLFLESEDPEKDVYL 70
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + +AIYD M +IK V T+C G AAS AA++LAGG KG R A+P+ARIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQYIKCPVSTICTGQAASMAAVLLAGGAKGKRIALPHARIMI 130
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + R V L+ HT
Sbjct: 131 HQPLGGAQGQATDIEIQAKEILRLREVLNQILVDHT 166
>gi|359796110|ref|ZP_09298715.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
arsenitoxydans SY8]
gi|359365796|gb|EHK67488.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
arsenitoxydans SY8]
Length = 217
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIF 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>gi|119357822|ref|YP_912466.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
phaeobacteroides DSM 266]
gi|166201813|sp|A1BI15.1|CLPP_CHLPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|119355171|gb|ABL66042.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
phaeobacteroides DSM 266]
Length = 227
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 7/182 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHARKLYSGAIEQGITGSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTL 237
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R + L HT
Sbjct: 125 GAFLLASGTKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTG 184
Query: 238 ND 239
D
Sbjct: 185 KD 186
>gi|451979976|ref|ZP_21928378.1| ATP-dependent Clp protease, proteolytic subunit clpP [Nitrospina
gracilis 3/211]
gi|451762848|emb|CCQ89596.1| ATP-dependent Clp protease, proteolytic subunit clpP [Nitrospina
gracilis 3/211]
Length = 215
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 86/140 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIGQ I +A I+QL+ L + + D DI +Y+N PGG + S LAIY
Sbjct: 29 DIYSRLLKDRIIFIGQQIEDHMANLIIAQLLFLESDEPDQDIYLYINSPGGHVSSGLAIY 88
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG R+A+PN+R+M++QP G G D++
Sbjct: 89 DTMQYIKPDVQTICIGQAASMGALLLTAGTKGKRFALPNSRVMIHQPSGGFQGQSTDIQI 148
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L H+
Sbjct: 149 HAEEILKVRDTLDDILAKHS 168
>gi|126700971|ref|YP_001089868.1| ATP-dependent Clp protease proteolytic subunit 2 [Clostridium
difficile 630]
gi|254976933|ref|ZP_05273405.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-66c26]
gi|255094319|ref|ZP_05323797.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CIP 107932]
gi|255102503|ref|ZP_05331480.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-63q42]
gi|255308399|ref|ZP_05352570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile ATCC 43255]
gi|255316073|ref|ZP_05357656.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-76w55]
gi|255518732|ref|ZP_05386408.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-97b34]
gi|255651852|ref|ZP_05398754.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-37x79]
gi|260684879|ref|YP_003216164.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CD196]
gi|260688537|ref|YP_003219671.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile R20291]
gi|306521636|ref|ZP_07407983.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-32g58]
gi|384362546|ref|YP_006200398.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile BI1]
gi|423089882|ref|ZP_17078228.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 70-100-2010]
gi|115252408|emb|CAJ70250.1| ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
2) [Clostridium difficile 630]
gi|260211042|emb|CBA66381.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CD196]
gi|260214554|emb|CBE07092.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile R20291]
gi|357557468|gb|EHJ39008.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 70-100-2010]
Length = 194
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 91/139 (65%), Gaps = 4/139 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIFIG+ IN +A ++QL+ L + D D+DI++
Sbjct: 3 LVPHVIEQTGQGERSYDIYSKLLKDRIIFIGEEINDAIASLVVAQLLFLESEDPDSDIII 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS S AIYD M++++ V T+C G+AAS +A +LAGG G R A+PN+ IM+
Sbjct: 63 YINSPGGSATSGFAIYDTMNYVRCDVSTICIGMAASMSAFLLAGGTHGKRCALPNSEIMI 122
Query: 201 NQPQSGSGGHVEDVKRQVN 219
+QP G+ G DVK V+
Sbjct: 123 HQPMGGAKGQATDVKIAVD 141
>gi|53723667|ref|YP_103112.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
ATCC 23344]
gi|76808778|ref|YP_333874.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1710b]
gi|167719122|ref|ZP_02402358.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei DM98]
gi|167738116|ref|ZP_02410890.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 14]
gi|167815308|ref|ZP_02446988.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 91]
gi|167823710|ref|ZP_02455181.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 9]
gi|167845261|ref|ZP_02470769.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei B7210]
gi|167893805|ref|ZP_02481207.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 7894]
gi|167902257|ref|ZP_02489462.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei NCTC 13177]
gi|167910496|ref|ZP_02497587.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 112]
gi|167918525|ref|ZP_02505616.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei BCC215]
gi|67460238|sp|Q62JK7.1|CLPP_BURMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|92087004|sp|Q3JRC9.1|CLPP_BURP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|52427090|gb|AAU47683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei ATCC 23344]
gi|76578231|gb|ABA47706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1710b]
Length = 207
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 75
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 135
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + R L HT D
Sbjct: 136 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQD 174
>gi|20807119|ref|NP_622290.1| ATP-dependent Clp protease proteolytic subunit [Thermoanaerobacter
tengcongensis MB4]
gi|20515613|gb|AAM23894.1| Protease subunit of ATP-dependent Clp proteases [Thermoanaerobacter
tengcongensis MB4]
Length = 198
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G IN A I+Q++ L D D DI +Y+N PGGSI + LAIY
Sbjct: 22 DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPGGSITAGLAIY 81
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 82 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQGQATDIK 140
>gi|310657900|ref|YP_003935621.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [[Clostridium] sticklandii]
gi|308824678|emb|CBH20716.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [[Clostridium] sticklandii]
Length = 194
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGDQVNDHTASLIVAQLLHLESEDPDKDIFLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D+K
Sbjct: 79 DTMQYIKPDVATICVGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGTQGQATDIK 137
>gi|291569895|dbj|BAI92167.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
platensis NIES-39]
Length = 236
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 89/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
DL S L R+RIIF+G PI+ VA +Q++ L + D + DI +Y+N PGGS+ + + I
Sbjct: 49 FDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQLYINSPGGSVTAGMGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C+G+AAS A +LA G G R ++P++RIM++QP G+ G D++
Sbjct: 109 YDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIMIHQPLGGAQGQAIDIE 168
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + +H + L HT
Sbjct: 169 IQAKEILYHKHTLNTLLAQHT 189
>gi|284036063|ref|YP_003385993.1| endopeptidase Clp [Spirosoma linguale DSM 74]
gi|283815356|gb|ADB37194.1| Endopeptidase Clp [Spirosoma linguale DSM 74]
Length = 229
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G P++ +A ++QL+ L + D DILMYLN PGGS+Y+ L I
Sbjct: 53 VDVFSRLMADRIIFMGLPVDDNIANIIVAQLLFLESADPKKDILMYLNSPGGSVYAGLGI 112
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +++P V TVC +AAS A++LAGG G R A+P+AR+M++QP G+ G D++
Sbjct: 113 YDTMQYVRPDVATVCTSLAASMGAVLLAGGAAGKRSALPHARVMIHQPSGGAQGQSVDIE 172
Query: 216 RQVNEAVISRHVSLSFLLLH 235
E V R V L +L H
Sbjct: 173 ITAREIVKLR-VELYEILAH 191
>gi|60416366|sp|Q8RC25.2|CLPP_THETN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 195
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G IN A I+Q++ L D D DI +Y+N PGGSI + LAIY
Sbjct: 19 DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPGGSITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQGQATDIK 137
>gi|409993296|ref|ZP_11276442.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis str. Paraca]
gi|409935831|gb|EKN77349.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis str. Paraca]
Length = 237
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 89/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
DL S L R+RIIF+G PI+ VA +Q++ L + D + DI +Y+N PGGS+ + + I
Sbjct: 50 FDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQLYINSPGGSVTAGMGI 109
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C+G+AAS A +LA G G R ++P++RIM++QP G+ G D++
Sbjct: 110 YDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIMIHQPLGGAQGQAIDIE 169
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + +H + L HT
Sbjct: 170 IQAKEILYHKHTLNTLLAQHT 190
>gi|408674366|ref|YP_006874114.1| ATP-dependent Clp protease proteolytic subunit [Emticicia
oligotrophica DSM 17448]
gi|387855990|gb|AFK04087.1| ATP-dependent Clp protease proteolytic subunit [Emticicia
oligotrophica DSM 17448]
Length = 224
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 90/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G ++ VA ++QL+ L ++D D+LMY+N PGGS+Y+ L +
Sbjct: 48 IDVFSRLIMDRIIFLGTGVDDYVANVVVAQLLFLESVDAKKDVLMYINSPGGSVYAGLGM 107
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +++P V T+C +AAS A++LAGG G R A+P+AR+M++QP G+ G D++
Sbjct: 108 YDTMQYVRPDVATICTSLAASMGAVLLAGGAAGKRSALPHARVMIHQPSGGAQGQSRDME 167
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
V E + R L HT
Sbjct: 168 ITVKEIIKLRRELYEILANHT 188
>gi|209525239|ref|ZP_03273781.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
maxima CS-328]
gi|376006287|ref|ZP_09783579.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
gi|423065156|ref|ZP_17053946.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis C1]
gi|209494254|gb|EDZ94567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
maxima CS-328]
gi|375325348|emb|CCE19332.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
gi|406713288|gb|EKD08459.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis C1]
Length = 237
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 89/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
DL S L R+RIIF+G PI+ VA +Q++ L + D + DI +Y+N PGGS+ + + I
Sbjct: 50 FDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQLYINSPGGSVTAGMGI 109
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C+G+AAS A +LA G G R ++P++RIM++QP G+ G D++
Sbjct: 110 YDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIMIHQPLGGAQGQAIDIE 169
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + +H + L HT
Sbjct: 170 IQAKEILYHKHTLNTLLAQHT 190
>gi|398815689|ref|ZP_10574354.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
gi|398034174|gb|EJL27450.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
Length = 193
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ +A ++QL+ L D D DI +Y+N PGGS+ + +AIY
Sbjct: 18 DIYSRLLKDRIILLGTEIDDEIANLVVAQLLFLQAEDPDKDISLYINSPGGSVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D M +IKP V T+C G+AAS A +LA G KG R+A+PNA +M++QP G G ED+
Sbjct: 78 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGVRGQAEDIRI 137
Query: 215 --------KRQVNEAVISR 225
KRQ+NE + R
Sbjct: 138 HAEWIMKTKRQLNEILSER 156
>gi|326505348|dbj|BAK03061.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 284
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 90/137 (65%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF++RII G P+ +A ++QL+ L +D + DI+MY+N PGGS+ + +AI+D M
Sbjct: 102 SQLFQHRIIRCGGPVEDDMANVIVAQLLYLDAVDPNKDIIMYVNSPGGSVTAGMAIFDTM 161
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 162 KHIRPDVSTVCIGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 221
Query: 220 EAVISRHVSLSFLLLHT 236
E + + +L HT
Sbjct: 222 EMLHHKANLNGYLAYHT 238
>gi|311107153|ref|YP_003980006.1| ATP-dependent Clp protease proteolytic subunit ClpP [Achromobacter
xylosoxidans A8]
gi|310761842|gb|ADP17291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Achromobacter
xylosoxidans A8]
Length = 217
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLYINSPGGSVYAGMAIF 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>gi|124266485|ref|YP_001020489.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
petroleiphilum PM1]
gi|189082491|sp|A2SFB5.1|CLPP_METPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|124259260|gb|ABM94254.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
petroleiphilum PM1]
Length = 202
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 79 KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
+ N ++P V+ G D+ S L R R+IF+ P+N A ++QL+ L + +
Sbjct: 5 ETQNLGMVPVVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENP 64
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
D DI +Y+N PGGS+ + L+I+D M +IKP V T+C G+AAS A +LA G KG R+A+P
Sbjct: 65 DKDISLYINSPGGSVSAGLSIFDTMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALP 124
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
N+R+M++QP G+ G D++ Q E + R
Sbjct: 125 NSRVMIHQPSGGAQGQATDIEIQAREILKLRE 156
>gi|307730796|ref|YP_003908020.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1003]
gi|307585331|gb|ADN58729.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1003]
Length = 219
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 86/146 (58%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 13 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASLIVAQLLFLESENPDKDISF 72
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G+ G RYA+PNARIM+
Sbjct: 73 YINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLCAGQPGKRYALPNARIMI 132
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G G D+ Q E + R
Sbjct: 133 HQPSGGGQGTAADIDIQAKEVLYLRE 158
>gi|115311350|sp|Q3M726.2|CLPP3_ANAVT RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
Length = 214
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 11 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQL 70
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G KG R ++P++RIM+
Sbjct: 71 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMI 130
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 131 HQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHT 166
>gi|53719039|ref|YP_108025.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei K96243]
gi|121601387|ref|YP_993274.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
SAVP1]
gi|124386617|ref|YP_001029282.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
NCTC 10229]
gi|126440189|ref|YP_001059356.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 668]
gi|126450257|ref|YP_001080784.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
NCTC 10247]
gi|126451473|ref|YP_001066627.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1106a]
gi|134277993|ref|ZP_01764708.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 305]
gi|217421679|ref|ZP_03453183.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 576]
gi|226197408|ref|ZP_03792985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pakistan 9]
gi|237812684|ref|YP_002897135.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei MSHR346]
gi|238562204|ref|ZP_00440781.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei GB8 horse 4]
gi|242317499|ref|ZP_04816515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1106b]
gi|251766649|ref|ZP_02264557.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei PRL-20]
gi|254178458|ref|ZP_04885113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei ATCC 10399]
gi|254189184|ref|ZP_04895695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pasteur 52237]
gi|254206398|ref|ZP_04912750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei JHU]
gi|254258354|ref|ZP_04949408.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1710a]
gi|254297312|ref|ZP_04964765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 406e]
gi|254358192|ref|ZP_04974465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei 2002721280]
gi|386861423|ref|YP_006274372.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026b]
gi|403519055|ref|YP_006653189.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei BPC006]
gi|418382821|ref|ZP_12966747.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354a]
gi|418533694|ref|ZP_13099553.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026a]
gi|418540564|ref|ZP_13106094.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258a]
gi|418546808|ref|ZP_13111999.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258b]
gi|418553028|ref|ZP_13117869.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354e]
gi|67460243|sp|Q63V41.1|CLPP_BURPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201803|sp|A3MKJ8.1|CLPP_BURM7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201804|sp|A2SBG3.1|CLPP_BURM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201805|sp|A1V4X1.1|CLPP_BURMS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201806|sp|A3NWA6.1|CLPP_BURP0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201807|sp|A3NAI5.1|CLPP_BURP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|52209453|emb|CAH35404.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei K96243]
gi|121230197|gb|ABM52715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei SAVP1]
gi|124294637|gb|ABN03906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei NCTC 10229]
gi|126219682|gb|ABN83188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 668]
gi|126225115|gb|ABN88655.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1106a]
gi|126243127|gb|ABO06220.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei NCTC 10247]
gi|134251643|gb|EBA51722.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 305]
gi|147753841|gb|EDK60906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei JHU]
gi|148027319|gb|EDK85340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei 2002721280]
gi|157807201|gb|EDO84371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 406e]
gi|157936863|gb|EDO92533.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pasteur 52237]
gi|160699497|gb|EDP89467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei ATCC 10399]
gi|217395421|gb|EEC35439.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 576]
gi|225930787|gb|EEH26797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pakistan 9]
gi|237504658|gb|ACQ96976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei MSHR346]
gi|238523066|gb|EEP86507.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei GB8 horse 4]
gi|242140738|gb|EES27140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1106b]
gi|243065058|gb|EES47244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei PRL-20]
gi|254217043|gb|EET06427.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1710a]
gi|385360654|gb|EIF66568.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026a]
gi|385361174|gb|EIF67066.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258a]
gi|385362934|gb|EIF68724.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258b]
gi|385372144|gb|EIF77269.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354e]
gi|385376976|gb|EIF81604.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354a]
gi|385658551|gb|AFI65974.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026b]
gi|403074698|gb|AFR16278.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei BPC006]
Length = 217
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + R L HT D
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQD 184
>gi|254179427|ref|ZP_04886026.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1655]
gi|254200063|ref|ZP_04906429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei FMH]
gi|147749659|gb|EDK56733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei FMH]
gi|184209967|gb|EDU07010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1655]
Length = 211
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 20 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 79
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 80 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 139
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + R L HT D
Sbjct: 140 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQD 178
>gi|384084583|ref|ZP_09995758.1| ATP-dependent Clp protease proteolytic subunit [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 214
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ + M+A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 34 DIYSRLLKERVIFMVGQVEDMMANLVVAQLLFLEAENPDKDIALYINSPGGSVTAGMAIY 93
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+PKV TVC G AAS A++LA G +G RYA+PNARIML+QP G G D++
Sbjct: 94 DTMQFIRPKVSTVCIGQAASMGAVLLAAGAEGKRYALPNARIMLHQPSGGFQGQAHDIEI 153
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L+ HT
Sbjct: 154 HTKEILRIRERLNDILVHHT 173
>gi|313680148|ref|YP_004057887.1| ATP-dependent clp protease proteolytic subunit clpp [Oceanithermus
profundus DSM 14977]
gi|313152863|gb|ADR36714.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oceanithermus
profundus DSM 14977]
Length = 194
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+S VA ++Q++ L + + +I +Y+N PGG +Y+ LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDSQVANTIVAQMLFLEAQNPNQEIKLYINSPGGDVYAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+ G+AAS A +LA GE G RYA+P+AR+M++QP G+ G D+
Sbjct: 78 DTMQYVKSPVATIVVGMAASMGAFLLAAGEAGQRYALPHARVMIHQPWGGAQGQATDIAI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q + + S+ + L HT
Sbjct: 138 QAEQILKSKKLLNELLAKHT 157
>gi|354567676|ref|ZP_08986844.1| ATP-dependent Clp protease proteolytic subunit [Fischerella sp.
JSC-11]
gi|353542134|gb|EHC11598.1| ATP-dependent Clp protease proteolytic subunit [Fischerella sp.
JSC-11]
Length = 231
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 4/165 (2%)
Query: 76 ISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLAT 131
I +N ++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L
Sbjct: 19 IRAQNGPSNIVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDTVANSIVAQLLFLDA 78
Query: 132 IDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRY 191
D + DI +Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +LA G G R
Sbjct: 79 EDPEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLAAGTAGKRM 138
Query: 192 AMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++P++RIM++QP G+ G D++ Q E + + L HT
Sbjct: 139 SLPDSRIMIHQPLGGAQGQAIDIEIQAREILYIKGKLNQLLAHHT 183
>gi|323456646|gb|EGB12512.1| hypothetical protein AURANDRAFT_70482, partial [Aureococcus
anophagefferens]
Length = 1031
Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 82 NPPLMPAVMTPGGP-LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
+P +MP V G +D+ S L ++RI+ +G +N VA ++Q++ LA D + DI +
Sbjct: 54 SPVIMPTVTGANGEQIDVVSRLLKDRILLLGSEVNDEVANVLVAQMLYLANEDPEGDITL 113
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +I V TVCFG+AAS A +L G KG R ++PNARIM+
Sbjct: 114 YINSPGGSVSAGMAIYDTMQFIPCDVSTVCFGMAASMGAFLLGAGSKGKRKSLPNARIMI 173
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISR 225
+QP G+ G D++ Q E + ++
Sbjct: 174 HQPLGGAQGQAADIEIQAKEILFTK 198
>gi|357145775|ref|XP_003573761.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic-like isoform 1 [Brachypodium distachyon]
gi|357145778|ref|XP_003573762.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 294
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 92 PGGPL--DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSI 149
PGG D+ +L R RIIF+G I +A +SQL+ L +D ++DI +++N PGGS+
Sbjct: 74 PGGGASGDVMGLLLRERIIFLGNEIEDFLADAVVSQLLLLDAMDSESDIRLFVNSPGGSL 133
Query: 150 YSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG 209
+ +AIYD M I+ V T+ G+A S A+IIL GG KG R+AMPN RIM++QP G+ G
Sbjct: 134 SATMAIYDVMQLIRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMMHQPVGGASG 193
Query: 210 HVEDVKRQVNEAVISRH 226
DV+ Q E + S+
Sbjct: 194 QALDVEVQAKEILTSKR 210
>gi|187477999|ref|YP_786023.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
197N]
gi|115422585|emb|CAJ49110.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
197N]
Length = 217
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AI+
Sbjct: 40 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIF 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +LA G+KG R+++PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAKEILDLRE 169
>gi|114152202|sp|Q2L256.2|CLPP_BORA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 201
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AI+
Sbjct: 24 DIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIF 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +LA G+KG R+++PN+RIM++QP G+ G D++
Sbjct: 84 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIHQPSGGAQGQASDIQI 143
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 144 QAKEILDLRE 153
>gi|78188367|ref|YP_378705.1| peptidase S14, ClpP [Chlorobium chlorochromatii CaD3]
gi|90101406|sp|Q3ATL3.1|CLPP_CHLCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|78170566|gb|ABB27662.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
chlorochromatii CaD3]
Length = 225
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 7/179 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHAKKLYSGAIEQGISNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGTGIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P++ TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPEISTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R + L HT
Sbjct: 125 GAFLLASGNKGKRASLPHSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHT 183
>gi|94264491|ref|ZP_01288278.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
gi|94266601|ref|ZP_01290283.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
gi|93452772|gb|EAT03310.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
gi|93455050|gb|EAT05277.1| Endopeptidase Clp [delta proteobacterium MLMS-1]
Length = 200
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L + RIIF+G +N VA I+Q++ L D D DI
Sbjct: 3 LIPFVIEQTPRGERSYDIYSRLLKERIIFLGTGVNDEVANVVIAQMLFLEADDPDKDITF 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++K + T+C G AAS A++LA G KG RYA+PNARI++
Sbjct: 63 YINSPGGSVTAGLAIYDTMRYVKCDIATLCLGQAASMGAVLLAAGTKGKRYALPNARILI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ E + R L HT
Sbjct: 123 HQPMGGFQGQASDIDIHAREILRMRQGLNKMLADHT 158
>gi|429728764|ref|ZP_19263468.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptostreptococcus anaerobius VPI 4330]
gi|429147739|gb|EKX90761.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptostreptococcus anaerobius VPI 4330]
Length = 217
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 81 DNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDA 136
DN L+P V+ G D+ S L ++RIIF+G +N A ++Q++ L D D
Sbjct: 22 DNMALVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDQTASLVVAQMLFLEADDPDK 81
Query: 137 DILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA 196
DI +Y+N PGGS+ + +AIYD M +IK V T+C G+AAS A +LA G KG RYA+PN+
Sbjct: 82 DIHLYINSPGGSVTAGMAIYDTMQYIKADVSTICVGMAASMGAFLLAAGAKGKRYALPNS 141
Query: 197 RIMLNQPQSGSGGHVEDVK 215
+M++QP G+ G D++
Sbjct: 142 TVMIHQPLGGTRGQATDIE 160
>gi|193214418|ref|YP_001995617.1| endopeptidase Clp [Chloroherpeton thalassium ATCC 35110]
gi|193087895|gb|ACF13170.1| Endopeptidase Clp [Chloroherpeton thalassium ATCC 35110]
Length = 226
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L R RIIF+G PI+ A ++QL+ L + D + D
Sbjct: 26 NNMLVPMVIETSGRGERAFDIFSRLLRERIIFLGTPIDDHSASLIMAQLIYLESEDPERD 85
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I MY+N PGGS+ + L +YD M +I+P V TVC G+AAS A +LA G G R ++P++R
Sbjct: 86 IFMYINSPGGSVSAGLGLYDTMQYIRPDVSTVCVGMAASMGAFLLASGTAGKRASLPHSR 145
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
IM++QP G+ G D+ Q E R + HT D
Sbjct: 146 IMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELFAQHTKQD 187
>gi|78186273|ref|YP_374316.1| peptidase S14, ClpP [Chlorobium luteolum DSM 273]
gi|115311788|sp|Q3B5V8.1|CLPP_PELLD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|78166175|gb|ABB23273.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chlorobium
luteolum DSM 273]
Length = 225
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 7/182 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHASKLYSGAIEQGIQNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTL 237
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R + L HT
Sbjct: 125 GAFLLASGAKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTG 184
Query: 238 ND 239
D
Sbjct: 185 KD 186
>gi|376004076|ref|ZP_09781843.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
gi|375327546|emb|CCE17596.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
Length = 200
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 89/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
DL S L R+RIIF+G PI+ VA +Q++ L + D + DI +Y+N PGGS+ + + I
Sbjct: 13 FDLYSRLLRDRIIFLGTPIDDEVANAVSAQMLFLESEDPEKDIQLYINSPGGSVTAGMGI 72
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C+G+AAS A +LA G G R ++P++RIM++QP G+ G D++
Sbjct: 73 YDTMQQIRPDVVTICYGLAASMGAFLLASGTAGKRMSLPSSRIMIHQPLGGAQGQAIDIE 132
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + +H + L HT
Sbjct: 133 IQAKEILYHKHTLNTLLAQHT 153
>gi|217077313|ref|YP_002335031.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
africanus TCF52B]
gi|419759889|ref|ZP_14286174.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
africanus H17ap60334]
gi|217037168|gb|ACJ75690.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
africanus TCF52B]
gi|407514928|gb|EKF49714.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
africanus H17ap60334]
Length = 201
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G I+ VA ++QL+ L D D DI +Y+N PGGS+ + LAIY
Sbjct: 24 DIYSRLLKDRIVFLGSAIDDHVANLVVAQLLFLEAEDPDKDIQLYINSPGGSVSAGLAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V T+C G AAS A++LAGG KG R+++PN+RIM++QP G+ G +DV+
Sbjct: 84 DTMQYIKCDVATICIGQAASMGAVLLAGGTKGKRFSLPNSRIMIHQPLGGAEGPAKDVEI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + ++ L HT
Sbjct: 144 MTKELLRIKNKINEILSFHT 163
>gi|402298633|ref|ZP_10818309.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
alcalophilus ATCC 27647]
gi|401726173|gb|EJS99417.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
alcalophilus ATCC 27647]
Length = 193
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLNAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKPKV T+C G+AAS A +L+ GEKG RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMNFIKPKVSTICIGMAASMGAFLLSAGEKGKRYALPNSEVMIHQPLGGTRGQATDIE 137
>gi|242035957|ref|XP_002465373.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
gi|241919227|gb|EER92371.1| hypothetical protein SORBIDRAFT_01g037430 [Sorghum bicolor]
Length = 283
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%), Gaps = 15/218 (6%)
Query: 23 SFFSNRNSSRSIVSAL---PSPYGDSSSGGL-SIRNRGLPLKIDEKDFCSTEHSYKIISG 78
+R +R++ +A+ P PYG + G+ SIR+ L + + E + +G
Sbjct: 31 QLLRSRRCARAVTAAVAGGPVPYGAAPRRGIWSIRDD---LVVPRSPYFPVESA----AG 83
Query: 79 KNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
+ P P VM + S LF++RII G P+ +A ++QL+ L ID DI
Sbjct: 84 QERGP--SPMVMERF--QSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPTKDI 139
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+MY+N PGGS+ + +AI+D M I+P V TVC G+AAS A +L+ G KG RY++PN+RI
Sbjct: 140 IMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRI 199
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q NE + + +L HT
Sbjct: 200 MIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHT 237
>gi|383754373|ref|YP_005433276.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366425|dbj|BAL83253.1| putative ATP-dependent Clp protease proteolytic subunit
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 203
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 83/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++Q++ L + D D DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGGQIDDSVANVVVAQMLFLESEDPDKDIYLYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG R+A+PNAR+M++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICIGQAASMGAVLLTAGAKGKRFALPNARVMIHQPLGGAQGQSTDIQI 138
Query: 217 QVNE 220
Q E
Sbjct: 139 QARE 142
>gi|337288342|ref|YP_004627814.1| ATP-dependent Clp protease proteolytic subunit
[Thermodesulfobacterium sp. OPB45]
gi|334902080|gb|AEH22886.1| ATP-dependent Clp protease proteolytic subunit
[Thermodesulfobacterium geofontis OPF15]
Length = 194
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L + RI+FIG I+ VA I+QL+ L D D DI++Y
Sbjct: 5 IPIVIEQTGRTERAFDIYSRLLKERIVFIGTTIDENVANLVIAQLLYLEAEDPDKDIMLY 64
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG + + LAIYD + +IKP V T+C G AAS AA++LA G KG RYA+ ++RIML+
Sbjct: 65 INSPGGLVTAGLAIYDTIQYIKPDVCTICVGQAASMAAVLLAAGTKGKRYALRHSRIMLH 124
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
QP G +V+ Q E + R + L HT
Sbjct: 125 QPIGAFQGQATEVEIQAKEILRLREIITEILSQHT 159
>gi|428222327|ref|YP_007106497.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7502]
gi|427995667|gb|AFY74362.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. PCC 7502]
Length = 198
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G I+ V+ ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGDRAFDIFSRLLRERIVFLGTAIDDNVSNLVVAQLLFLEAEDPEKDIFI 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M I+P V T+C G+AAS A +LAGG KG R ++P+ RIM+
Sbjct: 61 YINSPGGSVTAGMAIYDTMQHIRPDVSTICVGLAASMGAFLLAGGTKGKRLSLPHTRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + ++ L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKNRLNELLAFHT 156
>gi|323703643|ref|ZP_08115286.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum nigrificans DSM 574]
gi|333922902|ref|YP_004496482.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323531415|gb|EGB21311.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum nigrificans DSM 574]
gi|333748463|gb|AEF93570.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 195
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 84/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI+ +A I+Q + L D + DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS + +LA G KG RYA+P ARIM++QP G G D+
Sbjct: 80 DTMQYIKPAVSTICLGQAASMGSFLLAAGAKGKRYALPQARIMIHQPLGGVQGQATDIDI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R + L HT
Sbjct: 140 HAREILRMREILNERLSHHT 159
>gi|284047279|ref|YP_003397619.1| endopeptidase Clp [Conexibacter woesei DSM 14684]
gi|283951500|gb|ADB54244.1| Endopeptidase Clp [Conexibacter woesei DSM 14684]
Length = 194
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ +P G D+ S L R+IF+GQ +N +A ++QL+ L ++D D DI
Sbjct: 3 PLVPMVVEQSPRGERSFDIYSRLLNERVIFLGQEVNDDIANLVVAQLLHLESVDADKDIN 62
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGS+ + AIYD M I+P V T+C G+A S + +L GG G R ++PN+RI+
Sbjct: 63 LYINSPGGSVSAGFAIYDTMQLIRPDVATICVGIAMSMGSFLLCGGASGKRMSLPNSRIL 122
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ EA+ +R LHT
Sbjct: 123 NHQPSGGFQGQATDIQIHAEEALAARRRLEELYALHT 159
>gi|255038319|ref|YP_003088940.1| endopeptidase Clp [Dyadobacter fermentans DSM 18053]
gi|254951075|gb|ACT95775.1| Endopeptidase Clp [Dyadobacter fermentans DSM 18053]
Length = 224
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 89/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G ++ +A ++QL+ L + D DILMY+N PGGS+Y+ L I
Sbjct: 48 VDVFSRLMADRIIFMGTGVDDNIANIIVAQLLFLESADPKKDILMYINSPGGSVYAGLGI 107
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +++P V TVC +AAS A++LAGG G R A+P+AR+M++QP G+ G D++
Sbjct: 108 YDTMQYVRPDVATVCTSLAASMGAVLLAGGAAGKRSALPHARVMIHQPSGGAQGTSVDIE 167
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E V RH L HT
Sbjct: 168 ITTREIVKLRHELYEILAHHT 188
>gi|226311381|ref|YP_002771275.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
gi|226094329|dbj|BAH42771.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
Length = 193
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ +A ++QL+ L D D DI +Y+N PGGS+ + +AIY
Sbjct: 18 DIYSRLLKDRIILLGTEIDDEIANLIVAQLLFLQAEDPDKDISLYINSPGGSVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D M +IKP V T+C G+AAS A +LA G KG R+A+PNA +M++QP G G ED+
Sbjct: 78 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGVRGQAEDIRI 137
Query: 215 --------KRQVNEAVISR 225
KRQ+NE + R
Sbjct: 138 HAEWIMKTKRQLNEILSER 156
>gi|42784300|ref|NP_981547.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 10987]
gi|402554765|ref|YP_006596036.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
FRI-35]
gi|67460499|sp|Q72XW9.1|CLPP2_BACC1 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|42740231|gb|AAS44155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus ATCC 10987]
gi|401795975|gb|AFQ09834.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
FRI-35]
Length = 193
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPDKDIHLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|312109546|ref|YP_003987862.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacillus
sp. Y4.1MC1]
gi|336233940|ref|YP_004586556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
thermoglucosidasius C56-YS93]
gi|423718668|ref|ZP_17692850.1| ATP-dependent clp protease, proteolytic subunit clpP [Geobacillus
thermoglucosidans TNO-09.020]
gi|311214647|gb|ADP73251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. Y4.1MC1]
gi|335360795|gb|AEH46475.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
thermoglucosidasius C56-YS93]
gi|383368270|gb|EID45543.1| ATP-dependent clp protease, proteolytic subunit clpP [Geobacillus
thermoglucosidans TNO-09.020]
Length = 196
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIE 137
>gi|254432364|ref|ZP_05046067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
PCC 7001]
gi|197626817|gb|EDY39376.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
PCC 7001]
Length = 235
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P ++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + DI
Sbjct: 35 PGVLPTVVEQSGKGERAFDIYSRLLRERIIFLGTGIDDAVADALVAQLLFLEAEDPEKDI 94
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+P+ARI
Sbjct: 95 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPSARI 154
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + + HT
Sbjct: 155 MIHQPLGGAQGQAVDIEIQAKEILFLKDTLNGLMAEHT 192
>gi|291463572|pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
gi|291463573|pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
gi|291463574|pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
gi|291463575|pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
gi|291463576|pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
gi|291463577|pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
gi|291463578|pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
gi|291463586|pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463587|pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463588|pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463589|pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463590|pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463591|pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463592|pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
gi|291463593|pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463594|pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463595|pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463596|pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463597|pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463598|pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463599|pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463600|pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463601|pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463602|pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463603|pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463604|pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463605|pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
gi|291463606|pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 136
>gi|427720043|ref|YP_007068037.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 7507]
gi|427352479|gb|AFY35203.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 7507]
Length = 232
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDTVANSIVAQLLFLDAEDSEKDIQL 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD M I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLTAGAAGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q E
Sbjct: 149 HQPLGGAQGQAIDIEIQARE 168
>gi|269792564|ref|YP_003317468.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100199|gb|ACZ19186.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio acidaminovorans DSM 6589]
Length = 199
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIFIGQ I+ ++ ++QL+ L + D D D+ +
Sbjct: 9 LIPYVIEQTGRGERSYDIYSRLLKDRIIFIGQEIDDHLSNLVVAQLLFLESEDPDKDVFV 68
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + LAIYD M ++K V T+C G AAS AA++L+ GEKG R +P++RIM+
Sbjct: 69 YINSPGGVVTAGLAIYDTMQYVKCPVSTICVGQAASMAAVLLSAGEKGKRICLPHSRIMI 128
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + S L HT
Sbjct: 129 HQPLGGAQGQASDIEIQAKEILRMKEILNSILSNHT 164
>gi|223994545|ref|XP_002286956.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978271|gb|EED96597.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 260
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 89/143 (62%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
PP +P V G LD+ S L ++RI+ +G +N VA ++QL+ LA D + DI +Y+
Sbjct: 58 PPTLPTVEGGSGQLDVISRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPEKDITLYI 117
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ + LAIYD M +I V TVCFG+AAS A +L G G R ++PNARIM++Q
Sbjct: 118 NSPGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIHQ 177
Query: 203 PQSGSGGHVEDVKRQVNEAVISR 225
P G+ G D++ Q E + +
Sbjct: 178 PLGGAQGQAADIEIQAKEILFVK 200
>gi|402549260|ref|ZP_10846113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86C]
Length = 204
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 97/162 (59%), Gaps = 4/162 (2%)
Query: 79 KNDNPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
K+ L+P V+ TP G D+ S L + R+IF+ P+ ++ ++QL+ L + +
Sbjct: 2 KDIQSALVPMVIEQTPRGERSFDIYSRLLKERVIFLSGPVEDYMSNLIVAQLLFLESENP 61
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
+ DI +Y+N PGGSI + LAIYD M +I P + T+C G AAS AI+LAGGEKG R+A+P
Sbjct: 62 EKDISIYINSPGGSISAGLAIYDTMQFISPSISTLCIGQAASMGAILLAGGEKGKRFALP 121
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
N+RIM++QP G G D + E + + V L HT
Sbjct: 122 NSRIMIHQPLGGFQGQASDFEIHAKEILHMKKVVNEILAKHT 163
>gi|395225605|ref|ZP_10404124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiovulum sp.
ES]
gi|394446228|gb|EJF07066.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiovulum sp.
ES]
Length = 197
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 87/139 (62%), Gaps = 4/139 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L ++RI+ + +N VA ++QL+ L D + DI Y
Sbjct: 4 IPYVVEKSGRGERSYDIYSRLLKDRIVMLSGEVNDAVASSIVAQLLFLEAEDPEKDIYFY 63
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG I S ++IYD M++IKP+V T+C G AAS A +L+ GEKG RYA+PNARIM++
Sbjct: 64 INSPGGVITSGMSIYDTMNYIKPQVSTICIGQAASMGAFLLSAGEKGKRYALPNARIMIH 123
Query: 202 QPQSGSGGHVEDVKRQVNE 220
QP G+ G D++ Q E
Sbjct: 124 QPLGGAKGQATDIQIQAEE 142
>gi|194334636|ref|YP_002016496.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prosthecochloris aestuarii DSM 271]
gi|194312454|gb|ACF46849.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Prosthecochloris aestuarii DSM 271]
Length = 226
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L + D + DI +
Sbjct: 28 LVPMVIETSGRGERAFDIFSRLLRERIIFLGTPIDEHVASLLMAQLIFLESEDPERDIYI 87
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L IYD M +I+P+V TVC G+AAS A +LA G K R ++P++RIM+
Sbjct: 88 YINSPGGSVSAGLGIYDTMQYIRPEVSTVCVGMAASMGAFLLASGAKDKRASLPHSRIMI 147
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D+ Q E R + L HT D
Sbjct: 148 HQPSGGAQGQETDILIQAREIEKIRKLLDEILAQHTGQD 186
>gi|333977877|ref|YP_004515822.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333821358|gb|AEG14021.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 197
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI+ VA I+Q++ L D + DI Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHFYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS + +LA G KG RYA+P ARIML+QP G G +++
Sbjct: 80 DTMQYIKPDVSTICLGQAASMGSFLLAAGAKGKRYALPYARIMLHQPLGGVQGQATEIEI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + + + L HT
Sbjct: 140 HAREILRIKDILNELLAKHT 159
>gi|124025671|ref|YP_001014787.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. NATL1A]
gi|123960739|gb|ABM75522.1| Clp protease subunit [Prochlorococcus marinus str. NATL1A]
Length = 205
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 13/157 (8%)
Query: 68 STEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAI 123
T+H Y+ ++P V+ G D+ S L R RI+F+G+P+ S A R +
Sbjct: 2 KTDHYYR---------SMIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIV 52
Query: 124 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 183
+QL+ L D D DI +Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +L
Sbjct: 53 AQLLFLEADDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLC 112
Query: 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
G KG R ++ ++RIM++QP G+ G D++ Q +E
Sbjct: 113 AGAKGKRSSLLHSRIMIHQPLGGARGQASDIRIQADE 149
>gi|116256435|sp|Q3ANI8.2|CLPP1_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
Length = 207
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 6 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 65
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 66 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 125
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + + HT
Sbjct: 126 MIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHT 163
>gi|392396474|ref|YP_006433075.1| protease subunit of ATP-dependent protease [Flexibacter litoralis
DSM 6794]
gi|390527552|gb|AFM03282.1| protease subunit of ATP-dependent protease [Flexibacter litoralis
DSM 6794]
Length = 228
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 98/173 (56%)
Query: 67 CSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQL 126
+T Y S N P ++ +D+ S L +RIIF+G I+ VA +QL
Sbjct: 24 TTTLEGYAKQSITNFTPYIIEERQLNVAQMDVFSRLMMDRIIFLGVGIDDQVANIVTAQL 83
Query: 127 VTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 186
+ L + D + D+LMYLN PGGS+Y+ L IYD M +I+P V T+C G+AAS A++L G+
Sbjct: 84 LFLESADHEKDVLMYLNSPGGSVYAGLGIYDTMQYIRPDVATLCTGLAASMGAVLLTAGQ 143
Query: 187 KGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
KG R A+P+AR+M++QP G G D++ + ++ + L H+ D
Sbjct: 144 KGKRTALPHARVMIHQPLGGIQGQASDIEITAKQILLVKKELTQILADHSERD 196
>gi|186681335|ref|YP_001864531.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc
punctiforme PCC 73102]
gi|186463787|gb|ACC79588.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc
punctiforme PCC 73102]
Length = 232
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 5/155 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L + D + DI M
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANSIVAQLLFLDSEDSEKDIQM 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YVNSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGAAGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
+QP G+ G D++ Q E ++ L+ L+ H
Sbjct: 149 HQPLGGAQGQAIDIEIQARE-ILYVKAKLNQLMSH 182
>gi|229815146|ref|ZP_04445483.1| hypothetical protein COLINT_02192 [Collinsella intestinalis DSM
13280]
gi|229809376|gb|EEP45141.1| hypothetical protein COLINT_02192 [Collinsella intestinalis DSM
13280]
Length = 206
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 96/143 (67%), Gaps = 7/143 (4%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L +RI+F+G+ +NS+ A I+QL+ L + D + DI +
Sbjct: 9 LVPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEVNSVTANLVIAQLLHLESQDAEKDISL 68
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG +YS LAI D M++IKP V T+C G+AAS AA++LA G G R+++P+++IM+
Sbjct: 69 YINSPGGEVYSGLAILDTMNYIKPDVSTICVGMAASMAAVLLAAGAPGKRFSLPHSKIMI 128
Query: 201 NQPQSGSGGH---VEDVKRQVNE 220
+QP G+ G +E R++ E
Sbjct: 129 HQPSGGAQGQQTEIEIAAREIRE 151
>gi|16080507|ref|NP_391334.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. 168]
gi|221311403|ref|ZP_03593250.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. 168]
gi|221315730|ref|ZP_03597535.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221320645|ref|ZP_03601939.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221324930|ref|ZP_03606224.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. SMY]
gi|321313004|ref|YP_004205291.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
BSn5]
gi|384177077|ref|YP_005558462.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
subtilis subsp. subtilis str. RO-NN-1]
gi|402777617|ref|YP_006631561.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
QB928]
gi|418031330|ref|ZP_12669815.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|428281042|ref|YP_005562777.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. natto BEST195]
gi|430758166|ref|YP_007208041.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|449095907|ref|YP_007428398.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
XF-1]
gi|452912837|ref|ZP_21961465.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Bacillus
subtilis MB73/2]
gi|3287962|sp|P80244.3|CLPP_BACSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Caseinolytic protease; AltName:
Full=Endopeptidase Clp; AltName: Full=Stress protein G7
gi|364506085|pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506086|pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506087|pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506088|pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506089|pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506090|pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|364506091|pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
gi|1945673|emb|CAB08043.1| hypothetical protein [Bacillus subtilis]
gi|2635967|emb|CAB15459.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. 168]
gi|2668494|gb|AAC46381.1| ClpP [Bacillus subtilis]
gi|291485999|dbj|BAI87074.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. natto BEST195]
gi|320019278|gb|ADV94264.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
BSn5]
gi|349596301|gb|AEP92488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
subtilis subsp. subtilis str. RO-NN-1]
gi|351472389|gb|EHA32502.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|402482796|gb|AFQ59305.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
QB928]
gi|407962289|dbj|BAM55529.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
BEST7613]
gi|407966303|dbj|BAM59542.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
BEST7003]
gi|430022686|gb|AGA23292.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|449029822|gb|AGE65061.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
XF-1]
gi|452117865|gb|EME08259.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Bacillus
subtilis MB73/2]
Length = 197
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|389576431|ref|ZP_10166459.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
cellulosolvens 6]
gi|389311916|gb|EIM56849.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
cellulosolvens 6]
Length = 193
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 88/136 (64%), Gaps = 4/136 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ G D+ S L ++RIIF+G+ +N + A ++QL+ L + D DI
Sbjct: 2 PLIPYVIEQTGRGERSYDIYSRLLKDRIIFLGEEVNDVSANLVVAQLLFLESEDPSKDIH 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGS+ + +AIYD M +IK V T+C G+AAS A +LAGG KG R A+PNA IM
Sbjct: 62 LYINSPGGSVTAGMAIYDTMQYIKCDVSTICLGLAASMGAFLLAGGTKGKRLALPNAEIM 121
Query: 200 LNQPQSGSGGHVEDVK 215
++QP G+ G D++
Sbjct: 122 IHQPSGGAQGKASDIE 137
>gi|364506078|pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506079|pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506080|pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506081|pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506082|pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506083|pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
gi|364506084|pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 136
>gi|239828281|ref|YP_002950905.1| ATP-dependent Clp protease proteolytic subunit [Geobacillus sp.
WCH70]
gi|259585956|sp|C5D7M9.1|CLPP_GEOSW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|239808574|gb|ACS25639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacillus
sp. WCH70]
Length = 196
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIE 137
>gi|87124411|ref|ZP_01080260.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RS9917]
gi|86167983|gb|EAQ69241.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RS9917]
Length = 196
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G+P+ S A R ++QL+ L D D DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEAEDPDKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|428211847|ref|YP_007084991.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
acuminata PCC 6304]
gi|428000228|gb|AFY81071.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
acuminata PCC 6304]
Length = 234
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 87/141 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
DL S L R RI+F+G P++ VA ++Q++ L D + DI +Y+N PGGS+ + +AI
Sbjct: 46 FDLYSRLLRERIVFLGTPVDDNVADLIVAQMLFLDAEDPEKDIQLYINSPGGSVTAGMAI 105
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C+G+AAS A +L G KG R ++P++RIM++QP G+ G D++
Sbjct: 106 YDTMQQIRPDVATICYGLAASMGAFLLTAGAKGKRMSLPSSRIMIHQPLGGAQGQAVDIE 165
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 166 IQAKEILYHKRQLNEMLAFHT 186
>gi|325264756|ref|ZP_08131485.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
sp. D5]
gi|324030048|gb|EGB91334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
sp. D5]
Length = 193
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 90/142 (63%), Gaps = 9/142 (6%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGS+ S LAIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTSGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V TVC G+AAS A +L+GG+KG R+A+PNA IM++QP G+ G ++
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLSGGKKGKRFALPNAEIMIHQPSGGAQGQATEIH- 137
Query: 217 QVNEAVISRHVSLSFLLLHTLN 238
+++ H+ + H LN
Sbjct: 138 -----IVAEHI---LKIRHKLN 151
>gi|386760068|ref|YP_006233285.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. JS]
gi|384933351|gb|AFI30029.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. JS]
Length = 196
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|150020876|ref|YP_001306230.1| ATP-dependent Clp protease proteolytic subunit [Thermosipho
melanesiensis BI429]
gi|149793397|gb|ABR30845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosipho
melanesiensis BI429]
Length = 202
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 91/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G I+ VA ++QL+ L D D DI +Y+N PGGS+ + LAIY
Sbjct: 24 DIYSRLLKDRIVFLGSAIDDHVANLIVAQLLFLEAEDPDKDIQLYINSPGGSVSAGLAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G AAS A++LAGG KG R+++PN+RIM++QP G+ G +DV+
Sbjct: 84 DTMQYVKCDVTTICIGQAASMGAVLLAGGTKGKRFSLPNSRIMIHQPLGGAEGPAKDVEI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + ++ L LHT
Sbjct: 144 MTKELLRIKNKINEILSLHT 163
>gi|227824397|ref|ZP_03989229.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
gi|352683492|ref|YP_004895475.1| ATP-dependent Clp protease [Acidaminococcus intestini RyC-MR95]
gi|226904896|gb|EEH90814.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
gi|350278145|gb|AEQ21335.1| ATP-dependent Clp protease [Acidaminococcus intestini RyC-MR95]
Length = 199
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 90/143 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+ I +A ++QL+ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 22 DIYSRLLKDRIIFVTGEIEDHMANLIVAQLLFLESEDPDKDIHLYINSPGGSVSAGLAIY 81
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+P V T+C G+AAS A+I+LA G KG R+A+P++R+M++QP G+ G D++
Sbjct: 82 DTMQYIRPDVSTICVGMAASMASILLAAGAKGKRFALPHSRVMIHQPLGGAQGQATDIEI 141
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + R L HT D
Sbjct: 142 HAREILRVREEMNQILAAHTGKD 164
>gi|116071740|ref|ZP_01469008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. BL107]
gi|116065363|gb|EAU71121.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. BL107]
Length = 224
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 23 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 82
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 83 QIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 142
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + + HT
Sbjct: 143 MIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMAEHT 180
>gi|157413171|ref|YP_001484037.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9215]
gi|254526501|ref|ZP_05138553.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9202]
gi|157387746|gb|ABV50451.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9215]
gi|221537925|gb|EEE40378.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Prochlorococcus marinus str. MIT 9202]
Length = 195
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D + DI M
Sbjct: 1 MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|326334771|ref|ZP_08200977.1| ATP-dependent Clp protease, protease subunit [Capnocytophaga sp.
oral taxon 338 str. F0234]
gi|325693084|gb|EGD35017.1| ATP-dependent Clp protease, protease subunit [Capnocytophaga sp.
oral taxon 338 str. F0234]
Length = 220
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 82 NPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
P +M +D+ S L +RIIF+G +NS VA +QL+ L ++D DI +Y
Sbjct: 30 TPYIMEERQLNVTQMDVFSRLMMDRIIFLGTDVNSQVANIIQAQLLFLESLDAQKDIQIY 89
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG +YS L IYD M +IKP+V T+C G+AAS AA++L G KG R A+P++RIM++
Sbjct: 90 INSPGGEVYSGLGIYDTMQFIKPQVATICTGLAASMAAVLLCAGAKGKRSALPHSRIMIH 149
Query: 202 QPQSGSGGHVEDVKRQVNEAV-ISRHVSL 229
QP G+ G D++ E + I +SL
Sbjct: 150 QPLGGAQGQASDIEINAREILKIKEELSL 178
>gi|456063263|ref|YP_007502233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
proteobacterium CB]
gi|455440560|gb|AGG33498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
proteobacterium CB]
Length = 209
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R R++F+ +N A I+QL+ L + + D +I +
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVNDQTANLVIAQLLFLESENPDKEISL 77
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +L GEKG RYA+PN+R+M+
Sbjct: 78 YINSPGGSVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLCAGEKGKRYALPNSRVMI 137
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 138 HQPLGGARGQASDIEIQAREILYLRE 163
>gi|78211620|ref|YP_380399.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CC9605]
gi|260436691|ref|ZP_05790661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 8109]
gi|78196079|gb|ABB33844.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. CC9605]
gi|260414565|gb|EEX07861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 8109]
Length = 224
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 23 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 82
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 83 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 142
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + + HT
Sbjct: 143 MIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHT 180
>gi|261415786|ref|YP_003249469.1| endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|385790679|ref|YP_005821802.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261372242|gb|ACX74987.1| Endopeptidase Clp [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|302326653|gb|ADL25854.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 196
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RIIF+G PIN VA ++QL+ L + + DI +
Sbjct: 2 IIPTVIETTGRGERAYDIYSRLLKERIIFLGTPINDEVANNVMAQLIFLEYENPEKDITL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + LAIYD M ++P + T+C G AS AA++LA G KG RYA+P++RIML
Sbjct: 62 YINSPGGYVSAGLAIYDTMQHVRPNIATICIGSCASMAAVLLAAGTKGKRYALPHSRIML 121
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP + G D++ E + ++ + HT
Sbjct: 122 HQPSGAATGQSTDIQITAKEIIRTKDTLTEIVAKHT 157
>gi|284046814|ref|YP_003397154.1| ATP-dependent Clp protease proteolytic subunit ClpP [Conexibacter
woesei DSM 14684]
gi|283951035|gb|ADB53779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Conexibacter
woesei DSM 14684]
Length = 193
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 95/157 (60%), Gaps = 4/157 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ T G D+ S L RIIF+G ++ VA ++QL+ L + D D DI
Sbjct: 2 PLVPMVIERTARGEREFDIYSRLLNERIIFLGTAVDDQVANLIVAQLLHLESSDPDKDIS 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGSIY+ LAIYD M +IKP V T+C G+A S +++L GG +G R ++PN+RI+
Sbjct: 62 IYINSPGGSIYAGLAIYDTMQFIKPDVQTICCGIAMSMGSLLLMGGARGKRMSLPNSRIL 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP +G G D++ E + +R HT
Sbjct: 122 IHQPSAGFEGQSTDIEIHAREIIKTRKRIDEIYAFHT 158
>gi|428311957|ref|YP_007122934.1| ATP-dependent Clp protease proteolytic subunit ClpP [Microcoleus
sp. PCC 7113]
gi|428253569|gb|AFZ19528.1| ATP-dependent Clp protease proteolytic subunit ClpP [Microcoleus
sp. PCC 7113]
Length = 202
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQP++S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQPVDSDLANLIVAQLLFLEAEDAEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M+ ++P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNQVRPDVCTICVGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + FL HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRRLNEFLAEHT 156
>gi|291463558|pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463559|pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463560|pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463561|pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463562|pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463563|pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463564|pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
gi|291463565|pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463566|pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463567|pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463568|pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463569|pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463570|pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
gi|291463571|pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ LA D + +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 136
>gi|330469650|ref|YP_004407393.1| endopeptidase clp [Verrucosispora maris AB-18-032]
gi|328812621|gb|AEB46793.1| endopeptidase clp [Verrucosispora maris AB-18-032]
Length = 212
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 84/135 (62%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
L + RIIF+G +N VA R +QL+ LA D D DI +++N PGGS+YS +AIYD M +
Sbjct: 32 LLKERIIFLGSEVNDQVANRICAQLLLLAAEDPDRDIFLWINSPGGSVYSGMAIYDTMQY 91
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
I V TV G+AAS ++L G KG RYA+P+ARIM++QP G GG D+ Q +
Sbjct: 92 IDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGLGGTASDIAIQAEQM 151
Query: 222 VISRHVSLSFLLLHT 236
+ ++ + + HT
Sbjct: 152 LYTKRMFQERVAHHT 166
>gi|392964774|ref|ZP_10330194.1| ATP-dependent Clp protease, protease subunit [Fibrisoma limi BUZ 3]
gi|387846157|emb|CCH52240.1| ATP-dependent Clp protease, protease subunit [Fibrisoma limi BUZ 3]
Length = 225
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 90/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G P++ +A ++QL+ L + D DILMY+N PGGS+Y+ L I
Sbjct: 48 VDVFSRLMADRIIFMGLPVDDNIANIIVAQLLFLESADPKKDILMYINSPGGSVYAGLGI 107
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +++P V TVC +AAS A++LAGG G R A+P+ARIM++QP G+ G D++
Sbjct: 108 YDTMQYVRPDVATVCTSLAASMGAVLLAGGAAGKRSALPHARIMIHQPSGGAQGQSVDIE 167
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E V R + L H+
Sbjct: 168 ITAREIVKLREELYTILANHS 188
>gi|254197976|ref|ZP_04904398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei S13]
gi|169654717|gb|EDS87410.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei S13]
Length = 217
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G +G RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGARGKRYALPNARVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + R L HT D
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQD 184
>gi|167562414|ref|ZP_02355330.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
oklahomensis EO147]
gi|167569597|ref|ZP_02362471.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
oklahomensis C6786]
Length = 207
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 75
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 135
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + L HT D
Sbjct: 136 HQPLGGARGQASDIEIQAREILYLKDRLNHLLAQHTGQD 174
>gi|427412668|ref|ZP_18902860.1| ATP-dependent Clp protease proteolytic subunit [Veillonella ratti
ACS-216-V-Col6b]
gi|425716475|gb|EKU79459.1| ATP-dependent Clp protease proteolytic subunit [Veillonella ratti
ACS-216-V-Col6b]
Length = 197
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 86/140 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PIN VA I+QL+ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIVFLGGPINDDVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG RYA+P+AR+M++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRYALPHARVMIHQPLGGVQGQASEIEI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L H+
Sbjct: 138 HAREILRMREELNGLLASHS 157
>gi|25019682|gb|AAN71768.1| ClpP2 [Synechococcus elongatus PCC 7942]
Length = 302
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 45 SSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSS 100
SS L I +R L +D + + + I+G ++P V+ G D+ S
Sbjct: 65 SSHASLPIHSRRLAAGLDSR---WQQPQIQAIAGSQ---AIVPTVVEQSGRGERAFDIYS 118
Query: 101 VLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 160
L R RI+F+G ++ VA ++QL+ L D + DI +Y+N PGGS+ + +AIYD M
Sbjct: 119 RLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQ 178
Query: 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
+ P V T+CFG+AAS A +L+GG +G R A+P+ARIM++QP G+ G D++ Q E
Sbjct: 179 QVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQARE 238
Query: 221 AVISRHVSLSFLLLHT 236
+ + L HT
Sbjct: 239 ILYHKSTLNDLLAQHT 254
>gi|406025640|ref|YP_006705941.1| ATP-dependent Clp protease proteolytic subunit [Cardinium
endosymbiont cEper1 of Encarsia pergandiella]
gi|404433239|emb|CCM10521.1| ATP-dependent Clp protease proteolytic subunit [Cardinium
endosymbiont cEper1 of Encarsia pergandiella]
Length = 225
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 92/144 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G ++ +A I+QL+ L ++D DIL+Y+N PGGS+Y L I
Sbjct: 47 VDVFSRLIMDRIIFLGTQVDDNIANVIIAQLLFLQSVDTKKDILLYINSPGGSVYPGLGI 106
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +I P V T+C G+AAS AA++LAGG K R A+P+AR+M++QP GS G D++
Sbjct: 107 YDTMQYISPNVATICTGLAASMAAVLLAGGAKNKRSALPHARVMIHQPLGGSKGTAADME 166
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
+ + + + + L HT D
Sbjct: 167 ITMQQMIEIKKDIYNILSTHTGQD 190
>gi|51598863|ref|YP_073051.1| ATP-dependent Clp protease proteolytic subunit [Borrelia garinii
PBi]
gi|67460252|sp|Q660R2.1|CLPP_BORGA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|51573434|gb|AAU07459.1| ATP-dependent Clp protease proteolytic component [Borrelia garinii
PBi]
Length = 194
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN + A I+QL+ L + D + DI +
Sbjct: 4 LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDLKADTVIAQLLFLESEDSNKDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LAGG KG R ++ +RIM+
Sbjct: 64 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLAYSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 124 HQPWGGISGQASDINIQANE 143
>gi|407981209|ref|ZP_11161953.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
HYC-10]
gi|407411926|gb|EKF33805.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
HYC-10]
Length = 198
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|294501768|ref|YP_003565468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
megaterium QM B1551]
gi|295707118|ref|YP_003600193.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
megaterium DSM 319]
gi|384044395|ref|YP_005492412.1| ATP-dependent Clp protease proteolytic subunit [Bacillus megaterium
WSH-002]
gi|294351705|gb|ADE72034.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
megaterium QM B1551]
gi|294804777|gb|ADF41843.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
megaterium DSM 319]
gi|345442086|gb|AEN87103.1| ATP-dependent Clp protease proteolytic subunit [Bacillus megaterium
WSH-002]
Length = 195
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIILGSAIDDNVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|139437042|ref|ZP_01771202.1| Hypothetical protein COLAER_00176 [Collinsella aerofaciens ATCC
25986]
gi|133776689|gb|EBA40509.1| endopeptidase Clp [Collinsella aerofaciens ATCC 25986]
Length = 210
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 95/138 (68%), Gaps = 4/138 (2%)
Query: 82 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
+ L+P V+ TP G D+ S L +RIIF+G+ INS+ A ++QL+ L + D + D
Sbjct: 10 DSALVPYVIEQTPRGERSYDIYSRLLNDRIIFLGEEINSVSANLVVAQLLHLESQDAEKD 69
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGG +YS LAI D M++IKP+V T+C G+AAS AA++L+ G KG R+ +P+++
Sbjct: 70 ISLYINSPGGEVYSGLAILDTMNFIKPQVSTICVGMAASMAAVLLSAGAKGKRFCLPHSK 129
Query: 198 IMLNQPQSGSGGHVEDVK 215
+M++QP G+ G +++
Sbjct: 130 VMIHQPSGGAQGQQTEIE 147
>gi|367470526|ref|ZP_09470222.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
gi|365814380|gb|EHN09582.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
Length = 205
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 96/147 (65%), Gaps = 5/147 (3%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ T G D+ S L RIIF+GQ I+ +A I+QL+ LA+ DED DI
Sbjct: 2 PLVPVVVERTARGEREYDIFSRLLNERIIFLGQGIDDQIANLVIAQLLHLASDDEDKDIS 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGS+ + LAI D M+++KP V T+C G+A S +++LAGG KG R+++PN+RI+
Sbjct: 62 IYINSPGGSVTAGLAILDTMNFVKPDVRTICVGIAMSAGSLLLAGGAKGKRFSLPNSRIL 121
Query: 200 LNQPQ-SGSGGHVEDVKRQVNEAVISR 225
+QP SG G D++ E + +R
Sbjct: 122 THQPSVSGFEGQATDIEIHARELIKTR 148
>gi|83718816|ref|YP_442643.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis E264]
gi|167581577|ref|ZP_02374451.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis TXDOH]
gi|167619693|ref|ZP_02388324.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis Bt4]
gi|167836265|ref|ZP_02463148.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis MSMB43]
gi|110816456|sp|Q2SWQ6.1|CLPP_BURTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|83652641|gb|ABC36704.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
thailandensis E264]
Length = 207
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 75
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 135
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + L HT D
Sbjct: 136 HQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQD 174
>gi|296330330|ref|ZP_06872811.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305676065|ref|YP_003867737.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. spizizenii str. W23]
gi|398304937|ref|ZP_10508523.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
vallismortis DV1-F-3]
gi|443630850|ref|ZP_21115031.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
gi|296152598|gb|EFG93466.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305414309|gb|ADM39428.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. spizizenii str. W23]
gi|443348655|gb|ELS62711.1| ATP-dependent Clp protease proteolytic subunit [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
Length = 198
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|419718353|ref|ZP_14245675.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lachnoanaerobaculum saburreum F0468]
gi|383305484|gb|EIC96847.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Lachnoanaerobaculum saburreum F0468]
Length = 193
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 87/131 (66%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L ++RIIF+G+ +N + A ++Q++ L + D DI +Y+N PGGS+ + +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDINLYINSPGGSVVAGMAI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++K V T+C G+AAS AA +LAGG KG RYA+PNA IM++QP G+ G +++
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMAAFLLAGGTKGKRYALPNAEIMIHQPSGGAQGQATEIR 137
Query: 216 RQVNEAVISRH 226
+ + +R
Sbjct: 138 IAAEQILKTRE 148
>gi|350267685|ref|YP_004878992.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
subtilis subsp. spizizenii TU-B-10]
gi|349600572|gb|AEP88360.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
subtilis subsp. spizizenii TU-B-10]
Length = 198
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|186475312|ref|YP_001856782.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phymatum STM815]
gi|184191771|gb|ACC69736.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phymatum STM815]
Length = 217
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 15 LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQSASLIVAQLLFLESENPDKDISF 74
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y LAI+D M +IKP V T+C G AAS +LA G G RYA+PNARIM+
Sbjct: 75 YINSPGGSVYDGLAIFDTMQFIKPDVSTLCTGFAASMGTFLLAAGAPGKRYALPNARIMI 134
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G G DV+ E + R
Sbjct: 135 HQPSGGGQGTASDVEIHAKEVLYLRE 160
>gi|311069969|ref|YP_003974892.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
1942]
gi|398308397|ref|ZP_10511871.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mojavensis
RO-H-1]
gi|419821657|ref|ZP_14345250.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
C89]
gi|310870486|gb|ADP33961.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
1942]
gi|388474293|gb|EIM11023.1| ATP-dependent Clp protease proteolytic subunit [Bacillus atrophaeus
C89]
Length = 198
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|158522703|ref|YP_001530573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus
oleovorans Hxd3]
gi|259585950|sp|A8ZXB7.1|CLPP_DESOH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|158511529|gb|ABW68496.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfococcus
oleovorans Hxd3]
Length = 205
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ T G D+ S L ++RI+FIG I+ A I+QL+ L + D D DI
Sbjct: 2 PLIPMVIEQTSRGERAFDIYSRLLKDRIVFIGSAIDDETANLLIAQLLFLESEDPDKDIN 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
Y+N PGG + + +AIYD M +IK + TVC G AAS A +LA G KG R+++PN+RIM
Sbjct: 62 FYINSPGGKVSAGMAIYDTMQYIKSDIATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D+ Q E + + + L HT
Sbjct: 122 IHQPMGGAQGQASDIAIQAKEILRMKDILNQILAHHT 158
>gi|157693854|ref|YP_001488316.1| ATP-dependent Clp protease proteolytic subunit [Bacillus pumilus
SAFR-032]
gi|389574748|ref|ZP_10164807.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. M 2-6]
gi|167008647|sp|A8FHN9.1|CLPP_BACP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157682612|gb|ABV63756.1| S14 family endopeptidase ClpP [Bacillus pumilus SAFR-032]
gi|388425674|gb|EIL83500.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. M 2-6]
Length = 198
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|434393622|ref|YP_007128569.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
gi|428265463|gb|AFZ31409.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
Length = 202
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ I+S +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQIDSNLANLIVAQLLFLDAEDSEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M+ I+P V T+C G+AAS A +L+ G KG R ++PNARIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPNARIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEYLAAHT 156
>gi|375150157|ref|YP_005012598.1| ATP-dependent Clp protease proteolytic subunit ClpP [Niastella
koreensis GR20-10]
gi|361064203|gb|AEW03195.1| ATP-dependent Clp protease proteolytic subunit ClpP [Niastella
koreensis GR20-10]
Length = 231
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 93/153 (60%)
Query: 68 STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
+T HSY+ S N P ++ +D+ S L +RIIF+G PIN VA +Q++
Sbjct: 20 NTLHSYQKHSVTNLTPNIIEERPMNIAVMDVYSRLMMDRIIFMGYPINDEVANIVTAQML 79
Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
L + D DI MY+N PGG++YS L +YD M++I P V T+C G+AAS AA++L G +
Sbjct: 80 FLESTDRTRDIQMYINSPGGNVYSGLGVYDTMNYITPDVSTICIGMAASMAAVLLCAGTQ 139
Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
G R A+ ++R+ML+QP GG D++ V E
Sbjct: 140 GKRTALKHSRVMLHQPSGAIGGQGSDIEITVQE 172
>gi|383787009|ref|YP_005471578.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Fervidobacterium pennivorans DSM 9078]
gi|383109856|gb|AFG35459.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Fervidobacterium pennivorans DSM 9078]
Length = 206
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++QL+ L + D DI +Y+N PGG + + LAIY
Sbjct: 30 DIYSRLLKDRIIFLGSAIDDHVANLVVAQLLFLEAENPDKDIQLYINSPGGLVTAGLAIY 89
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G AAS AA++LA G KG R+A+PN+RIM++QP G+ G +DV+
Sbjct: 90 DTMQYVKCDVATICIGQAASMAAVLLAAGAKGKRFALPNSRIMIHQPLGGAEGTAKDVEI 149
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + +H+ L HT
Sbjct: 150 LTKELLRIKHLINEILSKHT 169
>gi|154687585|ref|YP_001422746.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens FZB42]
gi|308175199|ref|YP_003921904.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens DSM 7]
gi|375363903|ref|YP_005131942.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|384161083|ref|YP_005543156.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens TA208]
gi|384165974|ref|YP_005547353.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens LL3]
gi|384170169|ref|YP_005551547.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens XH7]
gi|384266990|ref|YP_005422697.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385266358|ref|ZP_10044445.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. 5B6]
gi|387900080|ref|YP_006330376.1| ATP-dependent Clp protease, protease subunit [Bacillus
amyloliquefaciens Y2]
gi|394991001|ref|ZP_10383811.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. 916]
gi|421730139|ref|ZP_16169268.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|429506759|ref|YP_007187943.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|451345383|ref|YP_007444014.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens IT-45]
gi|452857085|ref|YP_007498768.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|166201799|sp|A7Z939.1|CLPP_BACA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|154353436|gb|ABS75515.1| ClpP [Bacillus amyloliquefaciens FZB42]
gi|307608063|emb|CBI44434.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens DSM 7]
gi|328555171|gb|AEB25663.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens TA208]
gi|328913529|gb|AEB65125.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens LL3]
gi|341829448|gb|AEK90699.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens XH7]
gi|371569897|emb|CCF06747.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|380500343|emb|CCG51381.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385150854|gb|EIF14791.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. 5B6]
gi|387174190|gb|AFJ63651.1| ATP-dependent Clp protease, protease subunit [Bacillus
amyloliquefaciens Y2]
gi|393808148|gb|EJD69457.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. 916]
gi|407076105|gb|EKE49089.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|429488349|gb|AFZ92273.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|449849141|gb|AGF26133.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens IT-45]
gi|452081345|emb|CCP23112.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 198
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|357419906|ref|YP_004932898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovirga
lienii DSM 17291]
gi|355397372|gb|AER66801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovirga
lienii DSM 17291]
Length = 192
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+FIG+ I+ +A ++QL+ L + D + D+ +
Sbjct: 2 LIPMVIEQTGRGERAYDIYSRLLKDRIVFIGEAIDDHLANLVVAQLLFLESEDPEKDVYV 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG I S LAIYD M +IK V T+C G AAS AA++LAGGE G R A+P+ARIML
Sbjct: 62 YINSPGGVITSGLAIYDTMQYIKCPVSTICIGQAASMAAVLLAGGEPGKRIALPSARIML 121
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ E + + L HT
Sbjct: 122 HQPLGGAQGQAVDIEIHAREILRLKERLNDILTYHT 157
>gi|194015348|ref|ZP_03053964.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
pumilus ATCC 7061]
gi|194012752|gb|EDW22318.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
pumilus ATCC 7061]
Length = 198
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|229828304|ref|ZP_04454373.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
14600]
gi|229792898|gb|EEP29012.1| hypothetical protein GCWU000342_00362 [Shuttleworthia satelles DSM
14600]
Length = 190
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N A ++QL+ L + D + DI +Y+N PGG + +AIY
Sbjct: 16 DIYSRLLKDRIIFLGEDVNETTASLIVAQLLFLESEDPNKDIHLYINSPGGVVTCGMAIY 75
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKP V T+C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G +++
Sbjct: 76 DTMNYIKPDVSTICIGMAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAKGQATEIE 134
>gi|429219605|ref|YP_007181249.1| protease subunit of ATP-dependent protease [Deinococcus
peraridilitoris DSM 19664]
gi|429130468|gb|AFZ67483.1| protease subunit of ATP-dependent protease [Deinococcus
peraridilitoris DSM 19664]
Length = 206
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+S VA ++QL+ L + + + +I +Y+NCPGG +Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFLGTPIDSQVANTIVAQLLLLDSQNPEREIQLYINCPGGEVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I + T+C G+A S ++IL G++G R+A PN+RIM++Q SG G+ DV+
Sbjct: 79 DTMQYISAPISTICVGIAMSMGSVILMSGDQGKRFATPNSRIMIHQGSSGFRGNTPDVEV 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + HT
Sbjct: 139 QAREVLYLRDKMIGLYNKHT 158
>gi|116243161|sp|Q1RJH2.2|CLPP_RICBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 227
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 86/143 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ PI +A +QL+ L + + DI MY+N PGG + + LAIY
Sbjct: 41 DIYSRLLKERIIFVCGPIEDHMANLITAQLLFLEAENPEKDIYMYINSPGGVVTAGLAIY 100
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S + +L GGEKGMRY++P++R+M++QP G G D++
Sbjct: 101 DTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRVMIHQPSGGYRGQATDIEI 160
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + + + S HT D
Sbjct: 161 HAQETLKIKKILNSLYSKHTGQD 183
>gi|311031871|ref|ZP_07709961.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. m3-13]
Length = 195
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ LA D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKP V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMNFIKPNVSTICVGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|345304234|ref|YP_004826136.1| ATP-dependent Clp protease proteolytic subunit [Rhodothermus
marinus SG0.5JP17-172]
gi|345113467|gb|AEN74299.1| ATP-dependent Clp protease proteolytic subunit [Rhodothermus
marinus SG0.5JP17-172]
Length = 250
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 88/141 (62%), Gaps = 1/141 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+ IG PIN +A ++QL+ LA+ D + DI +Y+N PGGSI S LA+Y
Sbjct: 52 DIFSRLLKERIVIIGTPINDQIANLVVAQLLWLASEDSERDINIYINSPGGSIDSGLAVY 111
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP-QSGSGGHVEDVK 215
D M ++ P V T+C G+AAS A++LA G KG R A+PN+RIM++QP SG G D++
Sbjct: 112 DTMQYVAPPVATICVGLAASMGAVLLAAGVKGKRAALPNSRIMIHQPWMSGVQGQATDIE 171
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 172 IHAREILKMRERLNEILAYHT 192
>gi|315650622|ref|ZP_07903682.1| ATP-dependent Clp protease proteolytic subunit [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315487119|gb|EFU77441.1| ATP-dependent Clp protease proteolytic subunit [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 193
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 87/131 (66%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L ++RIIF+G+ +N + A ++Q++ L + D DI +Y+N PGGS+ + +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDINLYINSPGGSVVAGMAI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++K V T+C G+AAS AA +LAGG KG RYA+PNA IM++QP G+ G +++
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMAAFLLAGGTKGKRYALPNAEIMIHQPSGGAQGQATEIR 137
Query: 216 RQVNEAVISRH 226
+ + +R
Sbjct: 138 IAAEQILKTRE 148
>gi|288818082|ref|YP_003432430.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
thermophilus TK-6]
gi|384128847|ref|YP_005511460.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobacter thermophilus TK-6]
gi|288787482|dbj|BAI69229.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenobacter
thermophilus TK-6]
gi|308751684|gb|ADO45167.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobacter thermophilus TK-6]
Length = 199
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 15/156 (9%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L D + DI M
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGYPIDDHVANLIVAQLLFLEAQDPEKDIYM 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G AAS A++LA G G RYA+P++RIM+
Sbjct: 68 YINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMGAVLLAAGAPGKRYALPHSRIMI 127
Query: 201 NQPQSGSGG-------HVEDVKR---QVNEAVISRH 226
+QP G G H E++KR +NE ++S+H
Sbjct: 128 HQPLGGITGQATDIIIHAEEIKRIKHMLNE-ILSKH 162
>gi|153814157|ref|ZP_01966825.1| hypothetical protein RUMTOR_00366 [Ruminococcus torques ATCC 27756]
gi|317499957|ref|ZP_07958193.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331087820|ref|ZP_08336745.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336438243|ref|ZP_08617883.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145848553|gb|EDK25471.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Ruminococcus torques ATCC 27756]
gi|316898674|gb|EFV20709.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330409515|gb|EGG88956.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336014049|gb|EGN43912.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 193
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 87/134 (64%), Gaps = 10/134 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG------- 209
D M +IK V TVC G+AAS A +LAGG+KG R+A+PNA IM++QP G+ G
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLAGGKKGKRFALPNAEIMIHQPSGGAQGQATEIQI 138
Query: 210 ---HVEDVKRQVNE 220
H+ K+++NE
Sbjct: 139 AAEHILRTKQKLNE 152
>gi|403745256|ref|ZP_10954194.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus hesperidum URH17-3-68]
gi|403121484|gb|EJY55777.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus hesperidum URH17-3-68]
Length = 185
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 86/131 (65%), Gaps = 6/131 (4%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++QL+ LA D D DI MY+N PGGS+ + LAIY
Sbjct: 12 DIYSRLLKDRIIFLGTAIDDDVANAVVAQLLFLAADDPDKDIQMYINSPGGSVSAGLAIY 71
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M IKP V T+C G+AAS A++L G KG R+A+PN+ +M++QP G+ G D++
Sbjct: 72 DTMQHIKPDVSTMCVGMAASMGAVLLTAGAKGKRFALPNSEVMIHQPLGGARGQASDIE- 130
Query: 217 QVNEAVISRHV 227
+ +RH+
Sbjct: 131 -----IHARHI 136
>gi|340787626|ref|YP_004753091.1| ATP-dependent Clp protease proteolytic subunit [Collimonas
fungivorans Ter331]
gi|340552893|gb|AEK62268.1| ATP-dependent Clp protease proteolytic subunit [Collimonas
fungivorans Ter331]
Length = 208
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 92/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+ P+N A ++QL+ L + + D DI +
Sbjct: 17 MVPIVIEQSGRGERSYDIYSRLLRERIIFLVGPVNDQTANLVVAQLLFLESENPDKDISL 76
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP++ T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 77 YINSPGGSVSAGMAIYDTMQFVKPEISTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 137 HQPLGGAQGQASDIEIQAREILYLRE 162
>gi|318041532|ref|ZP_07973488.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
CB0101]
Length = 196
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSESANRIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLTHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|427417857|ref|ZP_18908040.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7375]
gi|425760570|gb|EKV01423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7375]
Length = 200
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G ++ +A ++QL+ L + D + D+ +
Sbjct: 1 MLPVVLEQSGRGERAFDIYSRLLRERIVFLGSGVDDTLADSIVAQLLYLDSEDPEKDVQI 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI + +AIYD M I+P V T+CFG+AAS A +L+GG KG R A+P++RIM+
Sbjct: 61 YINSPGGSITAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGAKGKRMALPSSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQAVDIEIQAREILYLKQRLNELLAGHT 156
>gi|257138854|ref|ZP_05587116.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis E264]
gi|424903788|ref|ZP_18327301.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis MSMB43]
gi|390931661|gb|EIP89062.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis MSMB43]
Length = 217
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + L HT D
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQD 184
>gi|352096782|ref|ZP_08957538.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8016]
gi|351676004|gb|EHA59162.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8016]
Length = 229
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 92/157 (58%), Gaps = 4/157 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
P +P V+ G D+ S L R RIIF+G +N VA ++QL+ L D + DI
Sbjct: 29 PGVPTVVEQSGRGERSFDIYSRLLRERIIFLGTDVNDQVADALVAQLLFLEAEDPEKDIQ 88
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGSI + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARIM
Sbjct: 89 VYINSPGGSITAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIM 148
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D++ E + + + HT
Sbjct: 149 IHQPLGGAQGQAVDIEIMAQEILFLKETLNGLMADHT 185
>gi|402836307|ref|ZP_10884847.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Mogibacterium sp. CM50]
gi|402271403|gb|EJU20647.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Mogibacterium sp. CM50]
Length = 197
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 91/139 (65%), Gaps = 4/139 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ T GG D+ S L ++RIIFI Q I+ +A ++QL+ L D + DI +
Sbjct: 3 LIPYVVEQTCGGERSYDIYSRLLKDRIIFIDQEIDDHLASVVVAQLLFLEAEDPEKDINI 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + IYD M+++KP + T+CFG+AAS A++LA G KG R+A+P+A IM+
Sbjct: 63 YINSPGGSVTAGTGIYDTMNYVKPDIATICFGMAASMGAVLLAAGTKGKRFALPSAEIMI 122
Query: 201 NQPQSGSGGHVEDVKRQVN 219
+QP G+ G D+K Q
Sbjct: 123 HQPLGGAKGQASDIKIQAE 141
>gi|428775586|ref|YP_007167373.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halothece sp.
PCC 7418]
gi|428689865|gb|AFZ43159.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halothece sp.
PCC 7418]
Length = 199
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ ++ +A ++Q++ L D + DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRERIVFLGQQVDDEIANLIVAQMLYLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ GEKG R ++P++RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVSTICLGLAASMGAFLLSAGEKGKRLSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQQLNHYLAEHT 156
>gi|113953857|ref|YP_729303.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CC9311]
gi|113881208|gb|ABI46166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. CC9311]
Length = 229
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 92/157 (58%), Gaps = 4/157 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
P +P V+ G D+ S L R RIIF+G +N VA ++QL+ L D + DI
Sbjct: 29 PGVPTVVEQSGRGERSFDIYSRLLRERIIFLGTDVNDQVADALVAQLLFLEAEDPEKDIQ 88
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGSI + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARIM
Sbjct: 89 VYINSPGGSITAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIM 148
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D++ E + + + HT
Sbjct: 149 IHQPLGGAQGQAVDIEIMAQEILFLKETLNGLMADHT 185
>gi|325662430|ref|ZP_08151036.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 4_1_37FAA]
gi|331086220|ref|ZP_08335302.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|325471264|gb|EGC74488.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 4_1_37FAA]
gi|330406379|gb|EGG85893.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 193
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N + A ++QL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSASVIVAQLLFLEAEDPEKDIHLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G D+K
Sbjct: 79 DTMQFIKCDVSTTCIGMAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAQGQATDIK 137
>gi|268317954|ref|YP_003291673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
marinus DSM 4252]
gi|262335488|gb|ACY49285.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
marinus DSM 4252]
Length = 252
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 88/141 (62%), Gaps = 1/141 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+ IG PIN +A ++QL+ LA+ D + DI +Y+N PGGSI S LA+Y
Sbjct: 52 DIFSRLLKERIVIIGTPINDQIANLVVAQLLWLASEDSERDINIYINSPGGSIDSGLAVY 111
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP-QSGSGGHVEDVK 215
D M ++ P V T+C G+AAS A++LA G KG R A+PN+RIM++QP SG G D++
Sbjct: 112 DTMQYVAPPVATICVGLAASMGAVLLAAGVKGKRAALPNSRIMIHQPWMSGVQGQATDIE 171
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 172 IHAREILKMRERLNEILAYHT 192
>gi|317970010|ref|ZP_07971400.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
CB0205]
Length = 196
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G+P+ S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSESANRIVAQLLFLEAEDPEKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLTHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGAQGQASDIRIQADE 140
>gi|91205226|ref|YP_537581.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
RML369-C]
gi|157827437|ref|YP_001496501.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
OSU 85-389]
gi|91068770|gb|ABE04492.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
RML369-C]
gi|157802741|gb|ABV79464.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
OSU 85-389]
Length = 264
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 86/143 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ PI +A +QL+ L + + DI MY+N PGG + + LAIY
Sbjct: 78 DIYSRLLKERIIFVCGPIEDHMANLITAQLLFLEAENPEKDIYMYINSPGGVVTAGLAIY 137
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S + +L GGEKGMRY++P++R+M++QP G G D++
Sbjct: 138 DTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRVMIHQPSGGYRGQATDIEI 197
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + + + S HT D
Sbjct: 198 HAQETLKIKKILNSLYSKHTGQD 220
>gi|383758647|ref|YP_005437632.1| ATP-dependent Clp protease, protease subunit ClpP [Rubrivivax
gelatinosus IL144]
gi|381379316|dbj|BAL96133.1| ATP-dependent Clp protease, protease subunit ClpP [Rubrivivax
gelatinosus IL144]
Length = 202
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+ P+N VA +QL+ L + + D DI +
Sbjct: 11 MVPMVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQVANLVCAQLLFLESENPDKDIFL 70
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L+I+D M++IKP+V T+C G+AAS + +L G KG R+A+PN+R+M+
Sbjct: 71 YINSPGGSVSAGLSIFDTMNFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALPNSRVMI 130
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + +R
Sbjct: 131 HQPSGGAQGQASDIEIQAREIIKTRE 156
>gi|116074798|ref|ZP_01472059.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RS9916]
gi|116068020|gb|EAU73773.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RS9916]
Length = 196
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G+P+ S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSESANRIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGASGQASDIRIQADE 140
>gi|384108572|ref|ZP_10009464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema sp.
JC4]
gi|383869813|gb|EID85420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema sp.
JC4]
Length = 199
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+FI IN A A++Q++ L + + D DI +
Sbjct: 8 LVPYVVEKTGNGERTYDIFSRLLKDRIVFIDGEINDASADLAVAQILFLESENPDKDISV 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++K + T+C G AAS AI+LAGG G RYA+P++R+M+
Sbjct: 68 YINSPGGSVTAGLAIYDTMQYVKCDIQTICMGQAASMGAILLAGGTAGKRYALPSSRVMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ Q E + + +S+ + HT
Sbjct: 128 HQPWGGVQGQESDISIQAKEIIRLKKLSIEYFAHHT 163
>gi|73666834|ref|YP_302850.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia canis
str. Jake]
gi|108935919|sp|Q3YSQ3.1|CLPP_EHRCJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|72393975|gb|AAZ68252.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ehrlichia
canis str. Jake]
Length = 200
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 81/124 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFI PI +A ++QLV L + + +I MY+N PGG + + L+IY
Sbjct: 19 DIYSRLLKERIIFITGPIEDQMASLVVAQLVFLEAENPEKEICMYINSPGGVVTAGLSIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G AAS +++LA GE GMRYA+PN+RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRIMIHQPSGGFQGQATDIEI 138
Query: 217 QVNE 220
E
Sbjct: 139 HAKE 142
>gi|238026973|ref|YP_002911204.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia glumae
BGR1]
gi|237876167|gb|ACR28500.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia glumae
BGR1]
Length = 217
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +L+ G KG RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGLAASMGAFLLSSGAKGKRYALPNARVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLRE 171
>gi|427703523|ref|YP_007046745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium
gracile PCC 6307]
gi|427346691|gb|AFY29404.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium
gracile PCC 6307]
Length = 249
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 85/141 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+G I+ VA ++QL+ L D + DI +Y+N PGGS+ S LAI
Sbjct: 68 FDIYSRLLRERIIFLGTGIDDQVADSLVAQLLFLEAEDPEKDIQIYINSPGGSVTSGLAI 127
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M + P V T+C+G+AAS A +L GG G R A+PNARIM++QP G+ G D++
Sbjct: 128 YDTMQQVAPDVVTICYGLAASMGAFLLTGGAPGKRMALPNARIMIHQPLGGAQGQAVDIE 187
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + + HT
Sbjct: 188 IQAREILFLKDTLNGLMAEHT 208
>gi|373496129|ref|ZP_09586677.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
12_1B]
gi|404368998|ref|ZP_10974344.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
ulcerans ATCC 49185]
gi|313688290|gb|EFS25125.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
ulcerans ATCC 49185]
gi|371966040|gb|EHO83532.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
12_1B]
Length = 191
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 83/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++QL+ L D D DI+MY+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYINSPGGVVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V TVC G AAS A++L G KG RYA+ ++RIM++QP G+ G D++
Sbjct: 78 DTMNYIKPDVQTVCIGQAASMGALLLGAGAKGKRYALEHSRIMIHQPLGGARGQATDIEI 137
Query: 217 QVNE 220
Q E
Sbjct: 138 QAKE 141
>gi|226356972|ref|YP_002786712.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus deserti
VCD115]
gi|226318962|gb|ACO46958.1| putative Endopeptidase Clp [Deinococcus deserti VCD115]
Length = 200
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI S +A ++QL+ L + + + +I MY+NCPGG +Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V T+C G+A S +++L G+KG R A+PN+RIM++Q +G G+ D++
Sbjct: 79 DTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEV 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + HT
Sbjct: 139 QAKEVLHLRDKLVEIYHRHT 158
>gi|123966075|ref|YP_001011156.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9515]
gi|123200441|gb|ABM72049.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9515]
Length = 196
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D + DI M
Sbjct: 1 MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSDTANRIVAQLLFLEAEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|73748509|ref|YP_307748.1| ATP-dependent Clp protease proteolytic subunit [Dehalococcoides sp.
CBDB1]
gi|147669290|ref|YP_001214108.1| ATP-dependent Clp protease proteolytic subunit [Dehalococcoides sp.
BAV1]
gi|289432557|ref|YP_003462430.1| endopeptidase Clp [Dehalococcoides sp. GT]
gi|452203514|ref|YP_007483647.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
mccartyi DCMB5]
gi|115311356|sp|Q3ZX82.1|CLPP_DEHSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189082455|sp|A5FRE5.1|CLPP_DEHSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|73660225|emb|CAI82832.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dehalococcoides sp. CBDB1]
gi|146270238|gb|ABQ17230.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Dehalococcoides sp. BAV1]
gi|288946277|gb|ADC73974.1| Endopeptidase Clp [Dehalococcoides sp. GT]
gi|452110573|gb|AGG06305.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
mccartyi DCMB5]
Length = 200
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 96/162 (59%)
Query: 75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
+IS +N P ++ + D+ S+L + RIIF+G IN VA I+QL+ L D
Sbjct: 1 MISPENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDP 60
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
D DI +Y++ PGG I + LA+YD M I+PKV T+C GVAAS A ++L G KG RYA+P
Sbjct: 61 DKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALP 120
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
NA I ++Q G+ G D++ E + + + + L+ HT
Sbjct: 121 NATIHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHT 162
>gi|330817271|ref|YP_004360976.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
gladioli BSR3]
gi|327369664|gb|AEA61020.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
gladioli BSR3]
Length = 217
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +L+ G KG RYA+PNAR+M+
Sbjct: 86 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGLAASMGAFLLSSGAKGKRYALPNARVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLRE 171
>gi|198283159|ref|YP_002219480.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667656|ref|YP_002425388.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247680|gb|ACH83273.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519869|gb|ACK80455.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 214
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R++F+ + M+A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 34 DIYSRLLKERVVFLVGQVEDMMANLVVAQLLFLEAENPDKDIALYINSPGGSVTAGMAIY 93
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++PK+ TVC G AAS A++LA G +G RYA+PNARIML+QP G G D++
Sbjct: 94 DTMQFVRPKISTVCIGQAASMGAVLLAAGAEGKRYALPNARIMLHQPSGGFQGQAHDIEI 153
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L+ HT
Sbjct: 154 HTKEILRIRERLNDILVHHT 173
>gi|295696500|ref|YP_003589738.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kyrpidia
tusciae DSM 2912]
gi|295412102|gb|ADG06594.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Kyrpidia
tusciae DSM 2912]
Length = 192
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+QL+ LA D + D+ +Y+N PGGS+ + +AI
Sbjct: 19 DIYSRLLKDRIIFLGTPIDDQVANSVIAQLLFLAAEDPEKDVSLYINSPGGSVTAGMAIL 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +I+P V T+C G+AAS AA++LA G KG R A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIRPDVATICVGMAASMAAVLLAAGAKGKRRALPNSEIMIHQPLGGVQGQAVDIK 137
>gi|118444381|ref|YP_878863.1| ATP-dependent Clp protease proteolytic subunit [Clostridium novyi
NT]
gi|166201817|sp|A0Q2L1.1|CLPP_CLONN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|118134837|gb|ABK61881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
novyi NT]
Length = 195
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 80/123 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138
Query: 217 QVN 219
N
Sbjct: 139 HAN 141
>gi|87302740|ref|ZP_01085551.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 5701]
gi|87282623|gb|EAQ74581.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 5701]
Length = 196
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ + A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEDSGRGERAFDIYSRLLRERIIFLGEPVTAESANRVVAQLLFLEAEDPEKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLTAGAKGKRSSLHHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|291277236|ref|YP_003517008.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
mustelae 12198]
gi|290964430|emb|CBG40280.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
mustelae 12198]
Length = 195
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 81/124 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ + IN MVA ++QL+ L D DI Y+N PGG++ S +IY
Sbjct: 19 DIYSRLLKDRIVLLSGEINDMVASSIVAQLLFLEAEDAQKDIYFYINSPGGAVTSAFSIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+P V T+C G AAS A++L+ G KG RY++PN+RIM++QP G+ G D++
Sbjct: 79 DTMHYIRPDVATICVGQAASAGALLLSSGAKGKRYSLPNSRIMIHQPLGGAQGQATDIEI 138
Query: 217 QVNE 220
Q NE
Sbjct: 139 QANE 142
>gi|168064316|ref|XP_001784109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664360|gb|EDQ51083.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 230
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 86/129 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ ++ + RI+F+G ++ VA +SQL+ L +D + +I +++NCPGGSI + +AI+
Sbjct: 14 DVMGLMLKQRIVFLGHQMDDFVADAIVSQLLLLDAVDPNKEIRLFVNCPGGSISAAMAIF 73
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D + + V T+CFG+AAS AAI+LAGG G R AMPN+RIM++QP G+ G DV+
Sbjct: 74 DAIQLCRADVSTICFGLAASTAAIVLAGGTPGKRLAMPNSRIMMHQPLGGASGQAIDVEI 133
Query: 217 QVNEAVISR 225
Q E + +
Sbjct: 134 QAKEVMYHK 142
>gi|148242503|ref|YP_001227660.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
RCC307]
gi|147850813|emb|CAK28307.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
RCC307]
Length = 196
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ + A R ++QL+ L D D DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFMGEPVTAESANRIVAQLLFLEAEDPDKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP V TVC G+AAS A +LA G G R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLAAGAPGKRSSLQHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGAQGQASDIRIQADE 140
>gi|410479152|ref|YP_006766789.1| peptidase S14, ClpP [Leptospirillum ferriphilum ML-04]
gi|424867689|ref|ZP_18291469.1| Peptidase S14, ClpP [Leptospirillum sp. Group II 'C75']
gi|124514481|gb|EAY55994.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
rubarum]
gi|387221743|gb|EIJ76256.1| Peptidase S14, ClpP [Leptospirillum sp. Group II 'C75']
gi|406774404|gb|AFS53829.1| peptidase S14, ClpP [Leptospirillum ferriphilum ML-04]
Length = 203
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ MVA I+QL+ L D DI +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTAIDDMVANLVIAQLLFLEAEDASKDINLYINSPGGVVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++LA G G R+A+PNARIM++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGQAASMGAVLLAAGADGKRFALPNARIMIHQPLGGVQGQATEIEI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 138 HAREILKMREHLNGILAKHT 157
>gi|87123284|ref|ZP_01079135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. RS9917]
gi|86169004|gb|EAQ70260.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. RS9917]
Length = 199
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
MP V+ G D+ S L R RIIF+G I+ VA ++QL+ L D + +I +Y
Sbjct: 1 MPTVVEQSGRGERSFDIYSRLLRERIIFLGTGIDDQVADALVAQLLFLEAEDPEKEIQIY 60
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+P+ARIM++
Sbjct: 61 INSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPSARIMIH 120
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
QP G+ G D++ Q E + + + HT
Sbjct: 121 QPLGGAQGQAVDIEIQAQEILFLKDTLNGLMAEHT 155
>gi|284047883|ref|YP_003398222.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidaminococcus fermentans DSM 20731]
gi|283952104|gb|ADB46907.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidaminococcus fermentans DSM 20731]
Length = 197
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+ I +A I+QL+ L + D D D+ +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFVTGEIEDHMANLIIAQLLFLESEDPDKDVHLYINSPGGSVSAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+P V T+C G+AAS A+++LA G KG RYA+P++R+M++QP G+ G D++
Sbjct: 79 DTMQYIRPDVSTICVGMAASMASVLLAAGTKGKRYALPHSRVMIHQPLGGAQGQATDIEI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 139 HAREILRIREEMNQILASHT 158
>gi|242040043|ref|XP_002467416.1| hypothetical protein SORBIDRAFT_01g027680 [Sorghum bicolor]
gi|241921270|gb|EER94414.1| hypothetical protein SORBIDRAFT_01g027680 [Sorghum bicolor]
Length = 289
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 84/130 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ +L R RI+F+G I +A +SQL+ L ID D+DI +++N PGGS+ + +AIY
Sbjct: 76 DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAIDPDSDIRLFVNSPGGSLSATMAIY 135
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++ V T+ G+A S A+IIL GG KG R+AMPN RIM++QP G+ G DV+
Sbjct: 136 DVMQLVRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 195
Query: 217 QVNEAVISRH 226
Q E + ++
Sbjct: 196 QAKEILTNKR 205
>gi|381211603|ref|ZP_09918674.1| ATP-dependent Clp protease proteolytic subunit [Lentibacillus sp.
Grbi]
Length = 197
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSGIDDNVANSIVAQLLFLEAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPNVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGTQGQATDIE 137
>gi|15806970|ref|NP_295695.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
radiodurans R1]
gi|18203425|sp|Q9RSZ7.1|CLPP_DEIRA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|6459760|gb|AAF11524.1|AE002035_7 ATP-dependent Clp protease, proteolytic subunit ClpP [Deinococcus
radiodurans R1]
Length = 204
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G P+ S +A ++QL+ L + + + +I MY+NCPGG +Y+ LAIY
Sbjct: 22 DIYSRLLKDRIIFVGTPVESQMANSIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIY 81
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V T+C G+A S +++L G+KG R A+PN+RIM++Q +G G+ D++
Sbjct: 82 DTMRYIKAPVSTICVGMAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEV 141
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + HT
Sbjct: 142 QAKEVLKLRDTLVDIYHKHT 161
>gi|414075396|ref|YP_006994714.1| ATP-dependent ClpP protease [Anabaena sp. 90]
gi|413968812|gb|AFW92901.1| ATP-dependent ClpP protease [Anabaena sp. 90]
Length = 225
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ +VA ++QL+ L + D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDVVANSIVAQLLFLDSEDAEKDIQL 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTSGTAGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q E
Sbjct: 149 HQPLGGAQGQAIDIEIQARE 168
>gi|206602656|gb|EDZ39137.1| Peptidase S14, ClpP [Leptospirillum sp. Group II '5-way CG']
Length = 203
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ MVA I+QL+ L D DI +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTAIDDMVANLVIAQLLFLEAEDASKDINLYINSPGGVVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++LA G G R+A+PNARIM++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGQAASMGAVLLAAGADGKRFALPNARIMIHQPLGGVQGQATEIEI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 138 HAREILKMREHLNGILAKHT 157
>gi|390567835|ref|ZP_10248149.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
terrae BS001]
gi|389940146|gb|EIN01961.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
terrae BS001]
Length = 217
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 15 FVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQSASLIVAQLLFLESENPDKDISF 74
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y LAI+D M +IKP V T+C G AAS +LA G G R+A+PNARIM+
Sbjct: 75 YINSPGGSVYDGLAIFDTMQFIKPDVSTLCTGFAASMGTFLLAAGAPGKRFALPNARIMI 134
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G G DV+ Q E + R
Sbjct: 135 HQPSGGGQGTASDVEIQAKEVLYLRE 160
>gi|325294216|ref|YP_004280730.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064664|gb|ADY72671.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 200
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 11/145 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ VA ++QL+ L D + DI +Y+N PGG + + LAIY
Sbjct: 24 DIYSRLLKDRIIMLGTPIDDHVANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D M +IKP V T+C G AAS A++LA G KG R+A+P+ARIM++QP G G D+
Sbjct: 84 DTMQYIKPDVVTICLGQAASMGAVLLAAGAKGKRFALPHARIMIHQPLGGFQGQATDIEI 143
Query: 215 --------KRQVNEAVISRHVSLSF 231
K+ +NE ++S+H S
Sbjct: 144 HAKEILRLKKMLNE-ILSKHTGQSL 167
>gi|302035647|ref|YP_003795969.1| ATP-dependent Clp protease proteolytic subunit clpP [Candidatus
Nitrospira defluvii]
gi|300603711|emb|CBK40042.1| ATP-dependent Clp protease, proteolytic subunit clpP [Candidatus
Nitrospira defluvii]
Length = 211
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ + A I+QL+ L D + DI +Y+N PGGS+ + L IY
Sbjct: 18 DIYSRLLKDRIIFLGAPIDDVFANLIIAQLLFLEAEDPEKDINLYINSPGGSVTAGLGIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP + T+C G AAS A +L G KG RYA+PNAR+M++QP G G ++
Sbjct: 78 DTMQYVKPAINTICLGQAASMGAFLLTAGTKGKRYALPNARVMIHQPMGGFQGQATEIDI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R + HT
Sbjct: 138 HAREILKIRERLNEIMAKHT 157
>gi|291550775|emb|CBL27037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
torques L2-14]
Length = 193
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 87/134 (64%), Gaps = 10/134 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG------- 209
D M +IK V TVC G+AAS A +L+GG+KG R+A+PNA IM++QP G+ G
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLSGGKKGKRFALPNAEIMIHQPSGGAQGQATEIQI 138
Query: 210 ---HVEDVKRQVNE 220
H+ K+++NE
Sbjct: 139 AAEHILRTKKKLNE 152
>gi|72382132|ref|YP_291487.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. NATL2A]
gi|115311342|sp|Q46L44.1|CLPP1_PROMT RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|72001982|gb|AAZ57784.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Prochlorococcus marinus str. NATL2A]
Length = 196
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G+P+ S A R ++QL+ L D D DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEADDPDKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSLLHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|222624791|gb|EEE58923.1| hypothetical protein OsJ_10573 [Oryza sativa Japonica Group]
Length = 282
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 89/137 (64%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF++RII G P+ +A ++QL+ L ID + DI+MY+N PGGS+ + +AI+D M
Sbjct: 100 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTM 159
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 160 KHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 219
Query: 220 EAVISRHVSLSFLLLHT 236
E + + +L HT
Sbjct: 220 EMLHHKANLNGYLAYHT 236
>gi|297600816|ref|NP_001049902.2| Os03g0308100 [Oryza sativa Japonica Group]
gi|63003513|dbj|BAD98161.1| ATP-dependent protease [Oryza sativa Japonica Group]
gi|108707751|gb|ABF95546.1| ATP-dependent Clp protease proteolytic subunit 1, putative,
expressed [Oryza sativa Japonica Group]
gi|215740983|dbj|BAG97478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765780|dbj|BAG87477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674452|dbj|BAF11816.2| Os03g0308100 [Oryza sativa Japonica Group]
Length = 282
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 89/137 (64%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF++RII G P+ +A ++QL+ L ID + DI+MY+N PGGS+ + +AI+D M
Sbjct: 100 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTM 159
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 160 KHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 219
Query: 220 EAVISRHVSLSFLLLHT 236
E + + +L HT
Sbjct: 220 EMLHHKANLNGYLAYHT 236
>gi|386857537|ref|YP_006261714.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
gobiensis I-0]
gi|380001066|gb|AFD26256.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
gobiensis I-0]
Length = 200
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI S +A ++QL+ L + + + +I MY+NCPGG +Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V T+C G+A S +++L G+KG R A+PN+RIM++Q +G G+ D++
Sbjct: 79 DTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEV 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + HT
Sbjct: 139 QAKEVLHLRDKLVGIYHRHT 158
>gi|33861299|ref|NP_892860.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|67460516|sp|Q7V1W0.1|CLPP1_PROMP RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|33633876|emb|CAE19201.1| Clp protease subunit [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
Length = 196
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D + DI M
Sbjct: 1 MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSDTANRIVAQLLFLEAEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|408792290|ref|ZP_11203900.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463700|gb|EKJ87425.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Leptospira meyeri serovar Hardjo str. Went 5]
Length = 200
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
LMP V+ T G D+ S L ++RIIF+G I+ A +QL+ L + D DI +
Sbjct: 4 LMPYVIEQTSRGERQYDIFSRLLKDRIIFLGSAIDETYANVISAQLLFLEAENPDRDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S LAIYD M IKP+V T+C G A+S AA++LAGG KG R A+PN+RIML
Sbjct: 64 YINSPGGYVSSGLAIYDTMQLIKPEVRTLCIGQASSMAALLLAGGAKGKRSALPNSRIML 123
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+GG D++ E + + + HT
Sbjct: 124 HQPYGGAGGQASDIEISAKEIIKIKDKLIDLYGRHT 159
>gi|347753754|ref|YP_004861318.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Chloracidobacterium thermophilum B]
gi|347586272|gb|AEP10802.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Chloracidobacterium thermophilum B]
Length = 199
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++ IIFIG PI+ VA ++QL+ L + D + DI +Y+N PGGS+ + +AIY
Sbjct: 24 DIYSRLLKDNIIFIGTPIDDTVASLVVAQLLFLESEDPERDISIYINSPGGSVTAGMAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP + T C G AS A++LA G KG RYA+P++RI+++QP G+ G D+
Sbjct: 84 DTMQFVKPDIVTFCIGQCASMGALLLAAGTKGKRYALPHSRILIHQPSGGAQGQATDILI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E R ++ + L HT
Sbjct: 144 QAEEIKRIRELTSNILAKHT 163
>gi|195640846|gb|ACG39891.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
gi|413955932|gb|AFW88581.1| ATP-dependent Clp protease proteolytic subunit isoform 1 [Zea mays]
gi|413955933|gb|AFW88582.1| ATP-dependent Clp protease proteolytic subunit isoform 2 [Zea mays]
Length = 281
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 89/137 (64%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF++RII G P+ +A ++QL+ L ID + DI+MY+N PGGS+ + +AI+D M
Sbjct: 99 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTM 158
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 159 KHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 218
Query: 220 EAVISRHVSLSFLLLHT 236
E + + +L HT
Sbjct: 219 EMLHHKANLNGYLAYHT 235
>gi|427701944|ref|YP_007045166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium
gracile PCC 6307]
gi|427345112|gb|AFY27825.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium
gracile PCC 6307]
Length = 196
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ + A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTAESANRVVAQLLFLEAEDPEKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YVNSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLSHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|421858505|ref|ZP_16290772.1| Clp protease [Paenibacillus popilliae ATCC 14706]
gi|410831950|dbj|GAC41209.1| Clp protease [Paenibacillus popilliae ATCC 14706]
Length = 192
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N MVA I+Q++ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGSQVNDMVANSIIAQMLFLQADDPDKDIHLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTICVGMAASMGAFLLNAGSKGKRFALPNSEIMIHQPLGGAEGQASDIE 137
>gi|407478072|ref|YP_006791949.1| ATP-dependent Clp protease proteolytic subunit [Exiguobacterium
antarcticum B7]
gi|407062151|gb|AFS71341.1| ATP-dependent Clp protease proteolytic subunit [Exiguobacterium
antarcticum B7]
Length = 192
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ LA D D +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIILLGSAIDDNVANSVVAQLLFLAAEDPDKEISLYINSPGGSITAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKP+V T+C G+AAS A +L G KG R+A+PNA IM++QP G+ G D+K
Sbjct: 78 DTMNFIKPQVSTICIGMAASMGAFLLQAGAKGKRFALPNAEIMIHQPLGGTQGQASDIK 136
>gi|187918471|ref|YP_001884034.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
DAH]
gi|119861319|gb|AAX17114.1| ATP-dependent Clp protease proteolytic subunit [Borrelia hermsii
DAH]
Length = 199
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 87/142 (61%), Gaps = 4/142 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R+RIIF+ IN + A I+QL+ L + D DI +
Sbjct: 9 LVPTVVEYTGNYERVFDIYSRLLRDRIIFLSGEINDIRADTVIAQLLFLESEDSKKDIYV 68
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI S LAIYD M +IKP V T+C G AAS AA +LAGG G R ++ +RIM+
Sbjct: 69 YINSPGGSITSGLAIYDTMQYIKPDVRTICIGQAASMAAFLLAGGAIGKRESLSYSRIMI 128
Query: 201 NQPQSGSGGHVEDVKRQVNEAV 222
+QP G GG D+ Q NE +
Sbjct: 129 HQPWGGIGGQASDISIQANEII 150
>gi|134094958|ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subunit [Herminiimonas
arsenicoxydans]
gi|133738861|emb|CAL61908.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Herminiimonas arsenicoxydans]
Length = 209
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 92/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + R+IF+ P+N A ++QL+ L + + D DI +
Sbjct: 18 MVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVNDHAANLIVAQLLFLESENPDKDISL 77
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AI+D M +IKP V T+C G+AAS A +LA GEKG R+++PN+RIM+
Sbjct: 78 YINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMI 137
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 138 HQPLGGAQGQASDIEIQAREILYLRE 163
>gi|383784111|ref|YP_005468680.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
ferrooxidans C2-3]
gi|383083023|dbj|BAM06550.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
ferrooxidans C2-3]
Length = 200
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G PI+ VA I+QL+ L + D DI +Y+N PGG + + AIY
Sbjct: 18 DIYSRLLKERIIFLGTPIDDNVANLVIAQLLFLESEDASKDINIYINSPGGVVTAGFAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A +LA G KG R+A+PNAR+M++QP G G D+
Sbjct: 78 DTMQYIKPDVSTICVGQAASMGAFLLAAGAKGKRFALPNARVMIHQPLGGFQGQATDIAI 137
Query: 217 QVNEAVISRHVSLSFLLLH 235
E ++ L+ LL H
Sbjct: 138 HAKE-ILKMKSHLNELLAH 155
>gi|420256023|ref|ZP_14758888.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. BT03]
gi|398043984|gb|EJL36841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. BT03]
Length = 217
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
+P V+ G D+ S L R RI+F+ P+N A ++QL+ L + + D DI
Sbjct: 15 FVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQSASLIVAQLLFLESENPDKDISF 74
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y LAI+D M +IKP V T+C G AAS +LA G G R+A+PNARIM+
Sbjct: 75 YINSPGGSVYDGLAIFDTMQFIKPDVSTLCTGFAASMGTFLLAAGAPGKRFALPNARIMI 134
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G G DV+ Q E + R
Sbjct: 135 HQPSGGGQGTASDVEIQAKEVLYLRE 160
>gi|427734237|ref|YP_007053781.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rivularia sp.
PCC 7116]
gi|427369278|gb|AFY53234.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rivularia sp.
PCC 7116]
Length = 234
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 7/168 (4%)
Query: 76 ISGKNDNPP---LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVT 128
I ++D+P ++P V+ G D+ S L R RIIF+G PI+ VA ++QL+
Sbjct: 19 IYSQSDSPSATSMLPTVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANSLVAQLLF 78
Query: 129 LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKG 188
L D + DI +Y+N PGGS+ + +AIYD + I+P V T+CFG+AAS A++L G G
Sbjct: 79 LDADDSEKDIQIYVNSPGGSVTAGMAIYDTIQQIRPDVVTICFGLAASMGALLLTAGTAG 138
Query: 189 MRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
R ++P++RIM++QP G+ G D++ Q E + + L HT
Sbjct: 139 KRMSLPDSRIMIHQPLGGAQGQAVDIEIQAKEILYHKSKLNEILASHT 186
>gi|320332658|ref|YP_004169369.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
maricopensis DSM 21211]
gi|319753947|gb|ADV65704.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
maricopensis DSM 21211]
Length = 201
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+S VA ++QL+ L + + + +I +Y+N PGG +Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFLGTPIDSQVANTIVAQLLLLDSQNPEREIQLYINSPGGEVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V T+C G+A S ++IL G+KG R A+PN+RIM++Q SG G+ DV+
Sbjct: 79 DTMRYIKAPVSTICVGIAMSMGSVILMAGDKGKRSALPNSRIMIHQGSSGFRGNTPDVEV 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + HT
Sbjct: 139 QAKETLYLRDRLVDIYHRHT 158
>gi|452204950|ref|YP_007485079.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
mccartyi BTF08]
gi|452112006|gb|AGG07737.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
mccartyi BTF08]
Length = 200
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 96/162 (59%)
Query: 75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
+IS +N P ++ + D+ S+L + RIIF+G IN VA I+QL+ L D
Sbjct: 1 MISPENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDP 60
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
D DI +Y++ PGG I + LA+YD M I+PKV T+C GVAAS A ++L G KG RYA+P
Sbjct: 61 DKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALP 120
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
NA I ++Q G+ G D++ E + + + + L+ HT
Sbjct: 121 NATIHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHT 162
>gi|206890175|ref|YP_002248104.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|226706554|sp|B5YI38.1|CLPP_THEYD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|206742113|gb|ACI21170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 195
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 88/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG IN VA I+QL+ L T D + DI +Y+N PGG + S LAIY
Sbjct: 19 DIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPGGMVSSGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP + T C G A+S A ++LA G KG R+A+P++R+M++QP G G DV+
Sbjct: 79 DTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQPIGGFYGQATDVEI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + + + + L HT
Sbjct: 139 HAKEILKMKDLLNNILAKHT 158
>gi|110596915|ref|ZP_01385205.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
ferrooxidans DSM 13031]
gi|110341602|gb|EAT60062.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chlorobium
ferrooxidans DSM 13031]
Length = 225
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 101/182 (55%), Gaps = 7/182 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ + SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHARTLYSGAIEQGITNTLVPMVIETSGRGERAFDIFSRLLRERIIFLGNGIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTL 237
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R + L HT
Sbjct: 125 GAFLLASGAKGKRASLPHSRIMIHQPSGGAHGQETDIIIQAREIEKIRKLLDELLARHTG 184
Query: 238 ND 239
D
Sbjct: 185 KD 186
>gi|57234482|ref|YP_181451.1| ATP-dependent Clp protease proteolytic subunit [Dehalococcoides
ethenogenes 195]
gi|270308033|ref|YP_003330091.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
sp. VS]
gi|115311355|sp|Q3Z8J8.1|CLPP_DEHE1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|57224930|gb|AAW39987.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dehalococcoides ethenogenes 195]
gi|270153925|gb|ACZ61763.1| ATP-dependent Clp protease, proteolytic subunit [Dehalococcoides
sp. VS]
Length = 200
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 96/162 (59%)
Query: 75 IISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
+IS +N P ++ + D+ S+L + RIIF+G IN VA I+QL+ L D
Sbjct: 1 MISPENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDP 60
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
D DI +Y++ PGG I + LA+YD M I+PKV T+C GVAAS A ++L G KG RYA+P
Sbjct: 61 DKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALP 120
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
NA I ++Q G+ G D++ E + + + + L+ HT
Sbjct: 121 NATIHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHT 162
>gi|225850859|ref|YP_002731093.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
marina EX-H1]
gi|225644930|gb|ACO03116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
marina EX-H1]
Length = 202
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RII +G PI+ +A I+QL+ L + D + DI M
Sbjct: 12 LVPIVIEQTPRGERAYDIYSRLLKDRIIMLGFPIDDHIANLIIAQLLFLESEDPEKDIYM 71
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S LAIYD M +IKP V T+C G AAS A +L+ G KG RYA+P++RIM+
Sbjct: 72 YINSPGGVVTSGLAIYDTMRYIKPDVVTICMGQAASMGAFLLSAGAKGKRYALPSSRIMI 131
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D++ E
Sbjct: 132 HQPLGGFQGQATDIEIHAKE 151
>gi|427730195|ref|YP_007076432.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc sp.
PCC 7524]
gi|427366114|gb|AFY48835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc sp.
PCC 7524]
Length = 232
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQL 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTPGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKAQLNQLLAKHT 184
>gi|226494171|ref|NP_001140458.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
gi|194699596|gb|ACF83882.1| unknown [Zea mays]
gi|195624444|gb|ACG34052.1| ATP-dependent Clp protease proteolytic subunit 1 [Zea mays]
gi|414867979|tpg|DAA46536.1| TPA: ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 289
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 84/130 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ +L R RI+F+G I +A +SQL+ L ID D+DI +++N PGGS+ + +AIY
Sbjct: 76 DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAIDPDSDIRLFVNSPGGSLSATMAIY 135
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++ V T+ G+A S A+IIL GG KG R+AMPN RIM++QP G+ G DV+
Sbjct: 136 DVMQLVRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 195
Query: 217 QVNEAVISRH 226
Q E + ++
Sbjct: 196 QAKEILTNKR 205
>gi|444912991|ref|ZP_21233148.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
gi|444716404|gb|ELW57255.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
Length = 205
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 88/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ +G I+ VA +SQL+ L + D D DI +Y+N PGGS+ + LAIY
Sbjct: 21 DIYSRLLKDRIVMLGTEIDDDVANVIVSQLLFLESEDPDKDINLYINSPGGSVTAGLAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G AAS A++L G KG RYA+P++RIM++QP G G D++
Sbjct: 81 DTMQYVKPNVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEI 140
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R ++ HT
Sbjct: 141 QAKEILRMRAKLNELIVKHT 160
>gi|172058408|ref|YP_001814868.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Exiguobacterium sibiricum 255-15]
gi|171990929|gb|ACB61851.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Exiguobacterium sibiricum 255-15]
Length = 192
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ LA D D +I +Y+N PGGSI + +AIY
Sbjct: 18 DIYSRLLKDRIILLGSAIDDNVANSVVAQLLFLAAEDPDKEISLYINSPGGSITAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKP+V T+C G+AAS A +L G KG R+A+PNA IM++QP G+ G D+K
Sbjct: 78 DTMNFIKPQVSTICIGMAASMGAFLLQAGAKGKRFALPNAEIMIHQPLGGTQGQASDIK 136
>gi|443476633|ref|ZP_21066529.1| ATP-dependent Clp protease proteolytic subunit [Pseudanabaena
biceps PCC 7429]
gi|443018385|gb|ELS32644.1| ATP-dependent Clp protease proteolytic subunit [Pseudanabaena
biceps PCC 7429]
Length = 223
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 7/156 (4%)
Query: 69 TEHSYKIISGKNDNPPLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAIS 124
T + + I S +N ++P V+ G D+ S L R RI+F+G ++ A +S
Sbjct: 9 TSNQFAIASTQNQ---VVPMVVEQSGKGERAFDIFSRLLRERIVFLGSQVDDTTANLIMS 65
Query: 125 QLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAG 184
QL+ L D D DI +Y+N PGGS+Y+ +AI D M+ ++P V T+C G+AAS A +LA
Sbjct: 66 QLLFLEAEDPDKDIYLYINSPGGSVYAGMAILDTMNHVRPDVCTICMGLAASMGAFLLAS 125
Query: 185 GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
G KG R ++PNARIM++QP G+ G D++ Q E
Sbjct: 126 GAKGKRMSLPNARIMIHQPLGGAQGQAVDIEIQARE 161
>gi|374372573|ref|ZP_09630236.1| ATP-dependent Clp protease proteolytic subunit [Niabella soli DSM
19437]
gi|373235318|gb|EHP55108.1| ATP-dependent Clp protease proteolytic subunit [Niabella soli DSM
19437]
Length = 227
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 81 DNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
+ P+ AVM D+ S L +RIIF+G PIN VA +QL+ L + D DI M
Sbjct: 39 EERPMNVAVM------DVYSRLMMDRIIFLGYPINDEVANIVTAQLLFLDSTDRTRDINM 92
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ L +YD M ++ P V T+C G+AAS ++L G G R A+ +ARIM+
Sbjct: 93 YINSPGGSVYAGLGVYDTMQYVTPDVATICIGMAASMGCVLLGAGSHGKRAALKHARIMM 152
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G GG D++ VNE
Sbjct: 153 HQPSGGIGGQASDIEITVNE 172
>gi|433460812|ref|ZP_20418435.1| ATP-dependent Clp protease proteolytic subunit [Halobacillus sp.
BAB-2008]
gi|432191000|gb|ELK47985.1| ATP-dependent Clp protease proteolytic subunit [Halobacillus sp.
BAB-2008]
Length = 196
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ +A +SQL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSPIDDNIANSVVSQLLFLAADDPEKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L GE G RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICTGMAASMGAFLLNAGEPGKRYALPNSEVMIHQPLGGTQGQATDIE 137
>gi|386715303|ref|YP_006181626.1| ATP-dependent Clp protease proteolytic subunit [Halobacillus
halophilus DSM 2266]
gi|384074859|emb|CCG46352.1| ATP-dependent Clp protease proteolytic subunit [Halobacillus
halophilus DSM 2266]
Length = 193
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ ++ ++QL+ LA D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSPIDDNISNSIVAQLLFLAADDPDKDISLYINSPGGSITSGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L GE G RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPNVSTICTGMAASMGAFLLNAGEPGKRYALPNSEVMIHQPLGGTQGQASDIE 137
>gi|402817756|ref|ZP_10867343.1| ATP-dependent Clp protease proteolytic subunit 2 [Paenibacillus
alvei DSM 29]
gi|402504728|gb|EJW15256.1| ATP-dependent Clp protease proteolytic subunit 2 [Paenibacillus
alvei DSM 29]
Length = 192
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G I +A ++QL+ LA D D DI MY+N PGGS+ + IY
Sbjct: 20 DIYSRLLKDRIVFVGSEITDSLANSIVAQLLLLAAEDSDKDIYMYINSPGGSVTAGFGIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP+V T+C G+AAS +I+L G KG R+A+PN+ IM++QP G+ G D+
Sbjct: 80 DTMQYIKPQVHTICTGLAASYGSILLLAGAKGKRFALPNSEIMIHQPHGGAQGQASDIAI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
+ R + + HT
Sbjct: 140 SAKRILKMRERLVQLMADHT 159
>gi|163786488|ref|ZP_02180936.1| ATP-dependent Clp protease, proteolytic subunit [Flavobacteriales
bacterium ALC-1]
gi|159878348|gb|EDP72404.1| ATP-dependent Clp protease, proteolytic subunit [Flavobacteriales
bacterium ALC-1]
Length = 224
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 85/127 (66%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L +RIIF+G +N VA +QL+ L + D D+ +Y+N PGGS+Y+ L I
Sbjct: 49 FDVFSRLMMDRIIFLGTGVNDQVANIIQAQLLFLQSTDASKDVQIYINSPGGSVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS AA++L GEKG R A+ ++R+M++QP SG+ G V D++
Sbjct: 109 YDTMQFIKPDVATICTGIAASMAAVLLCAGEKGKRSALKHSRVMIHQPMSGTQGQVSDME 168
Query: 216 RQVNEAV 222
V E +
Sbjct: 169 IAVRETL 175
>gi|406874142|gb|EKD24155.1| hypothetical protein ACD_81C00091G0003 [uncultured bacterium]
Length = 195
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R+RIIF+G I+ VA I+QL+ LA D DI +YLN PGGS+ + LAI
Sbjct: 19 DIYSRLLRDRIIFLGGIIDDNVANTVIAQLLFLAHEDPKKDIQIYLNSPGGSVTAGLAIL 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKP V T+C G+AAS A++LAGG+KG R+A+PN+ +ML+Q G G D++
Sbjct: 79 DTMNYIKPDVSTICVGIAASMGAVLLAGGKKGKRFALPNSEVMLHQVMGGYEGQASDIE 137
>gi|383788383|ref|YP_005472952.1| ATP-dependent Clp protease proteolytic subunit [Caldisericum exile
AZM16c01]
gi|381364020|dbj|BAL80849.1| ATP-dependent Clp protease proteolytic subunit [Caldisericum exile
AZM16c01]
Length = 195
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
P++P+V+ G D+ S L ++RIIF+ I ++ A +++L+ L ++D DI
Sbjct: 2 PIIPSVVETTGRGEVSFDIYSRLLKDRIIFLTGEIETVHADLIVAELLYLESLDSTQDIY 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGG + +AIYD M +IK V T+C G AAS AA+ILA G KG RYA+P++RI+
Sbjct: 62 LYINSPGGEVIPGMAIYDTMQYIKAPVATICLGQAASLAAVILAAGRKGKRYALPHSRIL 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D++ Q E + + + L HT
Sbjct: 122 IHQPWGGAQGQATDIEIQAKELIRIKRMINEILSKHT 158
>gi|189424987|ref|YP_001952164.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
lovleyi SZ]
gi|226706453|sp|B3E1Z4.1|CLPP_GEOLS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189421246|gb|ACD95644.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
lovleyi SZ]
Length = 197
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 81/124 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+F+G IN VA I+QL+ L D D DI +Y+N PGG + + +AI+
Sbjct: 18 DIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIF 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IK V T+C G AAS A++L GEKG R+A+P+ARIM++QP GS G D+
Sbjct: 78 DTMNYIKAPVSTICIGQAASMGAVLLTAGEKGKRFALPHARIMIHQPSGGSRGQATDIMI 137
Query: 217 QVNE 220
Q E
Sbjct: 138 QAEE 141
>gi|410697314|gb|AFV76382.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
oshimai JL-2]
Length = 194
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 92/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAQVANTVVAQLLFLDAQNPNQEIRLYINSPGGEVDAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P+A++M++QP G+ G D+
Sbjct: 78 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGARGTASDIAI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + ++ + L HT
Sbjct: 138 QAQEILKAKKLLNEILAKHT 157
>gi|393776900|ref|ZP_10365194.1| ClpP protein [Ralstonia sp. PBA]
gi|392716257|gb|EIZ03837.1| ClpP protein [Ralstonia sp. PBA]
Length = 217
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAFDIYSRLLKERVVFLVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRFALPNSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRE 170
>gi|228472130|ref|ZP_04056896.1| Clp protease [Capnocytophaga gingivalis ATCC 33624]
gi|228276333|gb|EEK15057.1| Clp protease [Capnocytophaga gingivalis ATCC 33624]
Length = 219
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 74 KIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 133
KIIS P +M +D+ S L +RIIF+G +NS VA +QL+ L ++D
Sbjct: 24 KIISSMT--PYIMEERQLNVTQMDVFSRLMMDRIIFLGTDVNSHVANIIQAQLLFLESLD 81
Query: 134 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 193
DI +Y+N PGG +YS L IYD M +IKP+V T+C G+AAS AA++L G KG R A+
Sbjct: 82 ASKDIQIYINSPGGEVYSGLGIYDTMQFIKPEVATICTGMAASMAAVLLCAGAKGKRSAL 141
Query: 194 PNARIMLNQPQSGSGGHVEDVKRQVNE 220
P++R+M++QP G+ G D++ E
Sbjct: 142 PHSRVMIHQPLGGAQGQASDIEITARE 168
>gi|119898362|ref|YP_933575.1| ATP-dependent Clp protease proteolytic subunit [Azoarcus sp. BH72]
gi|166201798|sp|A1K783.1|CLPP_AZOSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|119670775|emb|CAL94688.1| Endopeptidase Clp [Azoarcus sp. BH72]
Length = 212
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ P+N + A ++QL+ L + + D DI
Sbjct: 19 LIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESENPDKDIYF 78
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G AAS A +LA GEKG R+ +PN+R+M+
Sbjct: 79 YINSPGGSVTAGLAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFCLPNSRVMI 138
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ E + R L HT
Sbjct: 139 HQPLGGFQGQASDIEIHAREILYLRERLNGMLAKHT 174
>gi|397618063|gb|EJK64740.1| hypothetical protein THAOC_14495 [Thalassiosira oceanica]
Length = 287
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 92/150 (61%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P MP V + G D+ S L ++RII +GQ ++ +A ++QL+ LA D DI +Y+
Sbjct: 87 PVRMPVVDSDGSQKDVISRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYI 146
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ + +AIYD M ++ V TVCFG+AAS A +L G G R A+PN+RIM++Q
Sbjct: 147 NSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNSRIMIHQ 206
Query: 203 PQSGSGGHVEDVKRQVNEAVISRHVSLSFL 232
P G+ G D++ Q E + R V +++
Sbjct: 207 PLGGAQGQAADIEIQAKEILFIREVLNTYI 236
>gi|302800375|ref|XP_002981945.1| hypothetical protein SELMODRAFT_233821 [Selaginella moellendorffii]
gi|302802337|ref|XP_002982924.1| hypothetical protein SELMODRAFT_234106 [Selaginella moellendorffii]
gi|300149514|gb|EFJ16169.1| hypothetical protein SELMODRAFT_234106 [Selaginella moellendorffii]
gi|300150387|gb|EFJ17038.1| hypothetical protein SELMODRAFT_233821 [Selaginella moellendorffii]
Length = 213
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 83/126 (65%)
Query: 101 VLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 160
+L R R +F+G ++ VA ISQL+ L +D +I M++NCPGGS+ + + IYD +
Sbjct: 3 LLLRQRTVFLGHQLDDFVADAIISQLLLLDAMDSKKEIRMFINCPGGSVSAAMGIYDAIQ 62
Query: 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
+ +V T+ FG+AAS A++ILAGG KG R+AMPN RIM++QP G+ G DV+ Q E
Sbjct: 63 LCRAEVSTIAFGLAASTASVILAGGTKGKRFAMPNTRIMVHQPMGGASGQAIDVEIQAKE 122
Query: 221 AVISRH 226
+ ++
Sbjct: 123 IMFHKN 128
>gi|251798425|ref|YP_003013156.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
gi|247546051|gb|ACT03070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
Length = 195
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 88/139 (63%), Gaps = 10/139 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA I+QL+ LA D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDDVANSVIAQLLFLAADDPEKDIHLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D M +IKP V T+C G+AAS +++L G KG R+A+PNA +M++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICMGMAASMGSLLLTAGAKGKRFALPNAEVMIHQPLGGVRGQASDIKI 138
Query: 215 --------KRQVNEAVISR 225
K+++NE + R
Sbjct: 139 HADWILKTKQKLNEIYVER 157
>gi|269798318|ref|YP_003312218.1| ATP-dependent Clp protease proteolytic subunit ClpP [Veillonella
parvula DSM 2008]
gi|269094947|gb|ACZ24938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
parvula DSM 2008]
Length = 197
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 83/130 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG RYA+P+ARIM++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARIMIHQPLGGVQGQASEIEI 137
Query: 217 QVNEAVISRH 226
E + R
Sbjct: 138 HAREILRMRE 147
>gi|302874445|ref|YP_003843078.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
cellulovorans 743B]
gi|307690948|ref|ZP_07633394.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
cellulovorans 743B]
gi|302577302|gb|ADL51314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
cellulovorans 743B]
Length = 194
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 81/118 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIVFLGEEVNDASASVVVAQLLFLESEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M++IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMNYIKPDVATICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGFKGQATDI 136
>gi|88658316|ref|YP_507695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ehrlichia
chaffeensis str. Arkansas]
gi|115311357|sp|Q2GFT8.1|CLPP_EHRCR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|88599773|gb|ABD45242.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ehrlichia
chaffeensis str. Arkansas]
Length = 199
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 82/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFI PI +A ++QL+ L + + + +I MY+N PGG + + L+IY
Sbjct: 19 DIYSRLLKERIIFITGPIEDQMASLIVAQLIFLESENPEKEICMYINSPGGVVTAGLSIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G AAS +++LA GE GMRYA+PN+RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRIMIHQPSGGFQGQATDIEI 138
Query: 217 QVNE 220
E
Sbjct: 139 HAKE 142
>gi|238923369|ref|YP_002936885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
rectale ATCC 33656]
gi|259585954|sp|C4ZGF4.1|CLPP_EUBR3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|238875044|gb|ACR74751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
rectale ATCC 33656]
gi|291525457|emb|CBK91044.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
rectale DSM 17629]
gi|291528435|emb|CBK94021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Eubacterium
rectale M104/1]
Length = 193
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N A ++QL+ L + D + DI +Y+N PGG + + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPNKDIHLYINSPGGMVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTICIGLAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAKGQATEIQ 137
>gi|422340211|ref|ZP_16421165.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|355370151|gb|EHG17539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 193
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 87 PAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L D + DI+MY+
Sbjct: 4 PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDSEKDIIMYI 63
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ +AIYD M++IKP V TVC G AAS A +LA G KG R+A+ N+RIM++Q
Sbjct: 64 NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123
Query: 203 P--QSGSGGHVEDVKRQVNE 220
P G G D+ NE
Sbjct: 124 PLISGGLKGQATDISIHANE 143
>gi|219115403|ref|XP_002178497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410232|gb|EEC50162.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 260
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 91/143 (63%)
Query: 94 GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVL 153
G LD+ S L ++RI+ +G +N VA ++QL+ LA D + DI +Y+N PGGS+ + L
Sbjct: 69 GQLDVVSRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPNKDITLYINSPGGSVSAGL 128
Query: 154 AIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVED 213
AIYD M +I V TVCFG+AAS A +L G G R ++PNARIM++QP G+ G +D
Sbjct: 129 AIYDTMKFIPCDVQTVCFGMAASMGAFLLGAGTPGKRKSLPNARIMIHQPLGGAQGQAQD 188
Query: 214 VKRQVNEAVISRHVSLSFLLLHT 236
++ Q E + ++ + F+ +T
Sbjct: 189 IEIQAKEILYTKALLNKFIADYT 211
>gi|452991802|emb|CCQ96761.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
ultunense Esp]
Length = 194
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 84/131 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G +N + A ++QL+ L D D DI +Y+N PGG++ + AIY
Sbjct: 19 DIYSRLLKERIIFLGGEVNDVTADLIVAQLLFLEAEDPDKDIQLYINSPGGAVSAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A +LA G KG R+++PN+ IM++QP G+ G ED++
Sbjct: 79 DTMQYIKPDVSTICIGRAASMGAFLLAAGAKGKRFSLPNSDIMIHQPLGGTQGQAEDIRI 138
Query: 217 QVNEAVISRHV 227
+ + +R +
Sbjct: 139 HAEKIIQTREL 149
>gi|282850557|ref|ZP_06259936.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
parvula ATCC 17745]
gi|294792182|ref|ZP_06757330.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. 6_1_27]
gi|294794047|ref|ZP_06759184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. 3_1_44]
gi|417001079|ref|ZP_11940993.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella parvula ACS-068-V-Sch12]
gi|282580050|gb|EFB85454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
parvula ATCC 17745]
gi|294455617|gb|EFG23989.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. 3_1_44]
gi|294457412|gb|EFG25774.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. 6_1_27]
gi|333975562|gb|EGL76441.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella parvula ACS-068-V-Sch12]
Length = 197
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 83/130 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG RYA+P+ARIM++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARIMIHQPLGGVQGQASEIEI 137
Query: 217 QVNEAVISRH 226
E + R
Sbjct: 138 HAREILRMRE 147
>gi|30023185|ref|NP_834816.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 14579]
gi|47567358|ref|ZP_00238071.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus G9241]
gi|49481130|ref|YP_039138.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52140414|ref|YP_086415.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
E33L]
gi|75759660|ref|ZP_00739744.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|118480187|ref|YP_897338.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis str. Al Hakam]
gi|190015186|ref|YP_001966706.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
gi|190015451|ref|YP_001967031.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
gi|190015619|ref|YP_001967344.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus]
gi|196032944|ref|ZP_03100357.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus W]
gi|196039610|ref|ZP_03106915.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus NVH0597-99]
gi|196045601|ref|ZP_03112831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus 03BB108]
gi|206970378|ref|ZP_03231331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH1134]
gi|208702014|ref|YP_002267309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus H3081.97]
gi|217956873|ref|YP_002335967.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH187]
gi|217962631|ref|YP_002341203.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH187]
gi|218231097|ref|YP_002369926.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
B4264]
gi|218848317|ref|YP_002455085.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH820]
gi|218900271|ref|YP_002448682.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
G9842]
gi|218906323|ref|YP_002454157.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH820]
gi|222098603|ref|YP_002532661.1| ATP-dependent clp protease proteolytic subunit [Bacillus cereus Q1]
gi|225867113|ref|YP_002752491.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus 03BB102]
gi|228903623|ref|ZP_04067744.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis IBL 4222]
gi|228910978|ref|ZP_04074786.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis IBL 200]
gi|228917753|ref|ZP_04081294.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228923875|ref|ZP_04087152.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228930150|ref|ZP_04093159.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228936434|ref|ZP_04099232.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228942286|ref|ZP_04104825.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228948867|ref|ZP_04111142.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228955388|ref|ZP_04117393.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228961377|ref|ZP_04122991.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228968242|ref|ZP_04129240.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228975215|ref|ZP_04135773.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228981853|ref|ZP_04142148.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis Bt407]
gi|228988373|ref|ZP_04148465.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229072597|ref|ZP_04205799.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
F65185]
gi|229082356|ref|ZP_04214819.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock4-2]
gi|229087619|ref|ZP_04219749.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-44]
gi|229094242|ref|ZP_04225321.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-42]
gi|229112558|ref|ZP_04242095.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock1-15]
gi|229124654|ref|ZP_04253836.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
95/8201]
gi|229130395|ref|ZP_04259353.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-Cer4]
gi|229147676|ref|ZP_04276019.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-ST24]
gi|229153305|ref|ZP_04281483.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
m1550]
gi|229158714|ref|ZP_04286772.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 4342]
gi|229164770|ref|ZP_04292604.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
R309803]
gi|229181405|ref|ZP_04308733.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
172560W]
gi|229187359|ref|ZP_04314502.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BGSC 6E1]
gi|229193390|ref|ZP_04320339.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 10876]
gi|254724422|ref|ZP_05186206.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. A1055]
gi|296505568|ref|YP_003667268.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis BMB171]
gi|301056609|ref|YP_003794820.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
biovar anthracis str. CI]
gi|365162906|ref|ZP_09359029.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus sp.
7_6_55CFAA_CT2]
gi|375287157|ref|YP_005107596.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus NC7401]
gi|376258514|ref|YP_005150236.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
NC7401]
gi|376269038|ref|YP_005121750.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
F837/76]
gi|384182975|ref|YP_005568737.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|384189233|ref|YP_005575129.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar chinensis CT-43]
gi|402563256|ref|YP_006605980.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis HD-771]
gi|410677561|ref|YP_006929932.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus
thuringiensis Bt407]
gi|423355628|ref|ZP_17333252.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
IS075]
gi|423356394|ref|ZP_17334004.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
IS075]
gi|423363017|ref|ZP_17340517.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD022]
gi|423375306|ref|ZP_17352643.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
AND1407]
gi|423386632|ref|ZP_17363887.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1X1-2]
gi|423411112|ref|ZP_17388232.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3O-2]
gi|423427236|ref|ZP_17404267.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3X2-2]
gi|423433103|ref|ZP_17410107.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4O-1]
gi|423438545|ref|ZP_17415526.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4X12-1]
gi|423506972|ref|ZP_17483561.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HD73]
gi|423527041|ref|ZP_17503486.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB1-1]
gi|423554402|ref|ZP_17530728.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
ISP3191]
gi|423565981|ref|ZP_17542256.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A1]
gi|423571713|ref|ZP_17547953.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A12]
gi|423572165|ref|ZP_17548378.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A12]
gi|423573202|ref|ZP_17549321.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-D12]
gi|423578071|ref|ZP_17554189.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-D12]
gi|423583301|ref|ZP_17559412.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD014]
gi|423588968|ref|ZP_17565054.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD045]
gi|423608514|ref|ZP_17584406.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD102]
gi|423608923|ref|ZP_17584814.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD102]
gi|423631886|ref|ZP_17607633.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD154]
gi|423634004|ref|ZP_17609657.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD156]
gi|423644305|ref|ZP_17619922.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD166]
gi|423650994|ref|ZP_17626564.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD169]
gi|423658059|ref|ZP_17633358.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD200]
gi|434378268|ref|YP_006612912.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis HD-789]
gi|449092201|ref|YP_007424642.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|452201640|ref|YP_007481721.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|67460463|sp|Q631K2.1|CLPP2_BACCZ RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|67460476|sp|Q6HBD8.1|CLPP2_BACHK RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|67460524|sp|Q815J6.1|CLPP2_BACCR RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|17981472|gb|AAL51030.1|AF454757_1 ClpP1 [Bacillus thuringiensis]
gi|29898745|gb|AAP12017.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 14579]
gi|47555979|gb|EAL14317.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus G9241]
gi|49332686|gb|AAT63332.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|51973883|gb|AAU15433.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
[Bacillus cereus E33L]
gi|74492856|gb|EAO55988.1| ATP-dependent endopeptidase clp proteolytic subunit clpP [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|116584526|gb|ABK00643.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus]
gi|116584862|gb|ABK00977.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
gi|116585132|gb|ABK01241.1| ATP-dependent Clp protease, proteolytic subunit [Bacillus cereus]
gi|118419412|gb|ABK87831.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
thuringiensis str. Al Hakam]
gi|195994373|gb|EDX58328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus W]
gi|196023432|gb|EDX62109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus 03BB108]
gi|196029770|gb|EDX68372.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus NVH0597-99]
gi|206734955|gb|EDZ52124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH1134]
gi|208657869|gb|ACI30239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus H3081.97]
gi|217064081|gb|ACJ78331.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH187]
gi|217068436|gb|ACJ82684.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH187]
gi|218159054|gb|ACK59046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus B4264]
gi|218536274|gb|ACK88672.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH820]
gi|218540368|gb|ACK92764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus AH820]
gi|218541218|gb|ACK93612.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus G9842]
gi|221242662|gb|ACM15372.1| ATP-dependent Clp protease, proteolytic subunit (endopeptidase Clp)
[Bacillus cereus Q1]
gi|225789761|gb|ACO29978.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus 03BB102]
gi|228590104|gb|EEK47974.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 10876]
gi|228596063|gb|EEK53740.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BGSC 6E1]
gi|228601980|gb|EEK59473.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
172560W]
gi|228618700|gb|EEK75692.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
R309803]
gi|228624698|gb|EEK81467.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
ATCC 4342]
gi|228629909|gb|EEK86560.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
m1550]
gi|228635689|gb|EEK92176.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-ST24]
gi|228653094|gb|EEL08974.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-Cer4]
gi|228658805|gb|EEL14463.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
95/8201]
gi|228670938|gb|EEL26245.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock1-15]
gi|228689234|gb|EEL43056.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-42]
gi|228695735|gb|EEL48590.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-44]
gi|228700788|gb|EEL53311.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock4-2]
gi|228710573|gb|EEL62546.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
F65185]
gi|228771354|gb|EEM19828.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228777965|gb|EEM26237.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis Bt407]
gi|228784494|gb|EEM32515.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228791415|gb|EEM39019.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228798262|gb|EEM45261.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228804180|gb|EEM50794.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228810829|gb|EEM57175.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228817330|gb|EEM63416.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228823266|gb|EEM69100.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228829435|gb|EEM75063.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228835674|gb|EEM81038.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228841990|gb|EEM87096.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228848633|gb|EEM93479.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis IBL 200]
gi|228856052|gb|EEN00591.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis IBL 4222]
gi|296326620|gb|ADH09548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis BMB171]
gi|300378778|gb|ADK07682.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
biovar anthracis str. CI]
gi|324329059|gb|ADY24319.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|326942942|gb|AEA18838.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar chinensis CT-43]
gi|358355684|dbj|BAL20856.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cereus NC7401]
gi|358356253|dbj|BAL21424.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
NC7401]
gi|363617191|gb|EHL68590.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus sp.
7_6_55CFAA_CT2]
gi|364514838|gb|AEW58237.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
F837/76]
gi|401076768|gb|EJP85119.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD022]
gi|401079111|gb|EJP87414.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
IS075]
gi|401081980|gb|EJP90251.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
IS075]
gi|401092725|gb|EJQ00850.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
AND1407]
gi|401108128|gb|EJQ16060.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3O-2]
gi|401109421|gb|EJQ17345.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3X2-2]
gi|401113015|gb|EJQ20887.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4O-1]
gi|401116160|gb|EJQ24002.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4X12-1]
gi|401181200|gb|EJQ88353.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
ISP3191]
gi|401192773|gb|EJQ99783.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A1]
gi|401198721|gb|EJR05636.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A12]
gi|401199716|gb|EJR06613.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-A12]
gi|401203128|gb|EJR09969.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-D12]
gi|401209361|gb|EJR16120.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD014]
gi|401215208|gb|EJR21926.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MSX-D12]
gi|401225356|gb|EJR31905.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD045]
gi|401236392|gb|EJR42852.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD102]
gi|401238523|gb|EJR44964.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD102]
gi|401263108|gb|EJR69241.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD154]
gi|401271370|gb|EJR77387.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD166]
gi|401280314|gb|EJR86235.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD169]
gi|401281910|gb|EJR87815.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD156]
gi|401288311|gb|EJR94064.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD200]
gi|401632053|gb|EJS49843.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1X1-2]
gi|401791908|gb|AFQ17947.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis HD-771]
gi|401876825|gb|AFQ28992.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis HD-789]
gi|402445783|gb|EJV77651.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HD73]
gi|402454204|gb|EJV85997.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB1-1]
gi|409176690|gb|AFV20995.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus
thuringiensis Bt407]
gi|449025958|gb|AGE81121.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|452107033|gb|AGG03973.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 193
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|33864600|ref|NP_896159.1| ATP-dependent Clp protease proteolytic subunit 2 [Synechococcus sp.
WH 8102]
gi|67460511|sp|Q7UA36.1|CLPP1_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|33632123|emb|CAE06579.1| ATP-dependent Clp protease proteolytic subunit 2 [Synechococcus sp.
WH 8102]
Length = 224
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 23 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 82
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 83 QIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARI 142
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + + HT
Sbjct: 143 MIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMADHT 180
>gi|443479146|ref|ZP_21068788.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
biceps PCC 7429]
gi|443015411|gb|ELS30378.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
biceps PCC 7429]
Length = 198
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ ++ ++ ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIFSRLLRERIVFLGQQVDDSISNIIVAQLLFLEADDPEKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M I+P V T+C G+AAS A +L GG KG R ++P+ RIM+
Sbjct: 61 YINSPGGSVTAGMAIYDTMQHIRPDVSTICVGLAASMGAFLLTGGAKGKRLSLPHTRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKSRLNELMAFHT 156
>gi|340758793|ref|ZP_08695375.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
varium ATCC 27725]
gi|251836566|gb|EES65101.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
varium ATCC 27725]
Length = 191
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 83/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++QL+ L D D DI+MY+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGTEIDDNVANAIVAQLLFLEAEDPDKDIIMYINSPGGVVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V TVC G AAS A++L G +G RYA+ ++RIM++QP G+ G D++
Sbjct: 78 DTMNYIKPDVQTVCIGQAASMGALLLGAGARGKRYALEHSRIMIHQPLGGARGQATDIEI 137
Query: 217 QVNE 220
Q E
Sbjct: 138 QAKE 141
>gi|320354136|ref|YP_004195475.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
propionicus DSM 2032]
gi|320122638|gb|ADW18184.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfobulbus
propionicus DSM 2032]
Length = 200
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ +P G D+ S L + RIIF+G +N VA ++QL+ L D D DI
Sbjct: 3 LVPMVVEQSPRGERAFDIYSRLLKERIIFLGTQVNDDVASLVVAQLLFLEAEDPDKDITF 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +I+ V T+C G AAS A++LA G G R+A+PN+RIM+
Sbjct: 63 YINSPGGSVTAGMAIYDTMQYIRCDVATLCMGQAASMGALLLASGAAGKRFALPNSRIMI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ E + RH + L HT
Sbjct: 123 HQPMGGYQGQATDIDIHAREILRMRHDLNTILARHT 158
>gi|443316648|ref|ZP_21046084.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 6406]
gi|442783734|gb|ELR93638.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 6406]
Length = 226
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 5/165 (3%)
Query: 75 IISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLA 130
I S + ++P V+ G D+ S L R RI+F+G P+ VA ++QL+ L
Sbjct: 15 IYSAAHQTRNMLPMVVEQSGRGERAFDIYSRLLRERIVFLGTPVTDAVADAIVAQLLFLD 74
Query: 131 TIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMR 190
+ + D+ +Y+N PGGS+ + +AIYD M I+P V T+CFG+AAS A +L GG KG R
Sbjct: 75 AEEPEKDVQIYINSPGGSVTAGMAIYDTMQQIRPDVVTICFGLAASMGAFLLCGGAKGKR 134
Query: 191 YAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
++P++RIM++QP G+ G D++ Q E + + L+ L+ H
Sbjct: 135 LSLPSSRIMVHQPLGGAQGQAVDIEIQAREILYHKQ-RLNELIAH 178
>gi|306820816|ref|ZP_07454440.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|402310280|ref|ZP_10829246.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacterium sp. AS15]
gi|304551134|gb|EFM39101.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|400368732|gb|EJP21739.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacterium sp. AS15]
Length = 195
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G +N A ++QL+ L + D D DI Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKERIIFLGDEVNDQTASLIVAQLLFLESEDPDKDIHFYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M IKP V T+C G+AAS A +L+ G+KG RYA+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTICVGMAASMGAFLLSSGKKGKRYALPNSEIMIHQPLGGTKGQATDIQ 137
>gi|126700924|ref|YP_001089821.1| ATP-dependent Clp protease proteolytic subunit 1 [Clostridium
difficile 630]
gi|254976904|ref|ZP_05273376.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-66c26]
gi|255094290|ref|ZP_05323768.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CIP 107932]
gi|255308377|ref|ZP_05352548.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile ATCC 43255]
gi|255316044|ref|ZP_05357627.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-76w55]
gi|255518701|ref|ZP_05386377.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-97b34]
gi|255651823|ref|ZP_05398725.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-37x79]
gi|255657263|ref|ZP_05402672.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-23m63]
gi|260684849|ref|YP_003216134.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CD196]
gi|260688507|ref|YP_003219641.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile R20291]
gi|296451896|ref|ZP_06893613.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP08]
gi|296879709|ref|ZP_06903684.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP07]
gi|306521610|ref|ZP_07407957.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-32g58]
gi|384362518|ref|YP_006200370.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile BI1]
gi|423081791|ref|ZP_17070390.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 002-P50-2011]
gi|423085912|ref|ZP_17074347.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 050-P50-2011]
gi|423089385|ref|ZP_17077744.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 70-100-2010]
gi|115252361|emb|CAJ70202.1| ATP-dependent Clp protease proteolytic subunit 1 [Clostridium
difficile 630]
gi|260211012|emb|CBA66324.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile CD196]
gi|260214524|emb|CBE07039.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile R20291]
gi|296259278|gb|EFH06156.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP08]
gi|296429298|gb|EFH15170.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile NAP07]
gi|357548303|gb|EHJ30169.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 050-P50-2011]
gi|357549864|gb|EHJ31702.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 002-P50-2011]
gi|357558182|gb|EHJ39684.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium difficile 70-100-2010]
Length = 194
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G +N A ++QL+ L D D DI +
Sbjct: 3 LVPVVVEQTGRGERSYDIFSRLLKDRIIFLGDQVNDATAGLIVAQLLFLEAEDPDKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI S +AIYD M +IKP V T+C G+AAS A +LA G KG R A+PN+ IM+
Sbjct: 63 YINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRLALPNSEIMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G D++
Sbjct: 123 HQPLGGAQGQATDIE 137
>gi|126696140|ref|YP_001091026.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9301]
gi|126543183|gb|ABO17425.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9301]
Length = 195
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D + DI M
Sbjct: 1 MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +LA G +G R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTQGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|423369117|ref|ZP_17346548.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD142]
gi|401078473|gb|EJP86784.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD142]
Length = 193
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|253681101|ref|ZP_04861904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum D str. 1873]
gi|331270305|ref|YP_004396797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum BKT015925]
gi|416350488|ref|ZP_11680890.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum C str. Stockholm]
gi|253562950|gb|EES92396.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum D str. 1873]
gi|329126855|gb|AEB76800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum BKT015925]
gi|338196268|gb|EGO88472.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum C str. Stockholm]
Length = 195
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 80/123 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138
Query: 217 QVN 219
N
Sbjct: 139 HAN 141
>gi|168186116|ref|ZP_02620751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum C str. Eklund]
gi|169296133|gb|EDS78266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum C str. Eklund]
Length = 195
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 80/123 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138
Query: 217 QVN 219
N
Sbjct: 139 HAN 141
>gi|163942836|ref|YP_001647720.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
weihenstephanensis KBAB4]
gi|228993855|ref|ZP_04153759.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
pseudomycoides DSM 12442]
gi|228999881|ref|ZP_04159453.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
Rock3-17]
gi|229007435|ref|ZP_04165032.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
Rock1-4]
gi|229062796|ref|ZP_04200101.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH603]
gi|229135952|ref|ZP_04264713.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-ST196]
gi|229169852|ref|ZP_04297548.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH621]
gi|423388590|ref|ZP_17365816.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1X1-3]
gi|423400026|ref|ZP_17377199.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-2]
gi|423416963|ref|ZP_17394052.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3X2-1]
gi|423451604|ref|ZP_17428457.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5X1-1]
gi|423462074|ref|ZP_17438870.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5X2-1]
gi|423479281|ref|ZP_17455996.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6X1-1]
gi|423484826|ref|ZP_17461515.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6X1-2]
gi|423513410|ref|ZP_17489940.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA2-1]
gi|423519803|ref|ZP_17496284.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA2-4]
gi|423595672|ref|ZP_17571702.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD048]
gi|423670666|ref|ZP_17645695.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM034]
gi|423673107|ref|ZP_17648046.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM062]
gi|163865033|gb|ABY46092.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
weihenstephanensis KBAB4]
gi|228613566|gb|EEK70695.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH621]
gi|228647494|gb|EEL03568.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
BDRD-ST196]
gi|228716556|gb|EEL68259.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
AH603]
gi|228753823|gb|EEM03264.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
Rock1-4]
gi|228759823|gb|EEM08797.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
Rock3-17]
gi|228765911|gb|EEM14561.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
pseudomycoides DSM 12442]
gi|401108381|gb|EJQ16312.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG3X2-1]
gi|401133929|gb|EJQ41552.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5X2-1]
gi|401136677|gb|EJQ44263.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6X1-2]
gi|401145312|gb|EJQ52838.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5X1-1]
gi|401157944|gb|EJQ65340.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA2-4]
gi|401221566|gb|EJR28180.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD048]
gi|401294953|gb|EJS00578.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM034]
gi|401311207|gb|EJS16515.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM062]
gi|401642665|gb|EJS60371.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1X1-3]
gi|401656653|gb|EJS74168.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-2]
gi|402425585|gb|EJV57731.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6X1-1]
gi|402445654|gb|EJV77523.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA2-1]
Length = 193
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|423394662|ref|ZP_17371863.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-1]
gi|423405531|ref|ZP_17382680.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-3]
gi|401657444|gb|EJS74954.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-1]
gi|401661147|gb|EJS78617.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG2X1-3]
Length = 193
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|428297818|ref|YP_007136124.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
gi|428234362|gb|AFZ00152.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
Length = 201
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ I+S VA ++QL+ L + D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERILFLGQAIDSNVANLIVAQLLYLDSEDSEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEYLADHT 156
>gi|388491004|gb|AFK33568.1| unknown [Lotus japonicus]
Length = 308
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 87/143 (60%)
Query: 84 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 143
P PA G D +L R RI+F+G I+ VA +SQL+ L D DI +++N
Sbjct: 82 PQTPATAIRGAETDAMWLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFIN 141
Query: 144 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 203
PGGS+ + +AIYD + ++ V T+ G+AAS A+IIL GG KG R+AMPN RIM++QP
Sbjct: 142 SPGGSLSATMAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQP 201
Query: 204 QSGSGGHVEDVKRQVNEAVISRH 226
G+ G DV+ Q E + +++
Sbjct: 202 LGGASGQAIDVEIQAKEVMHNKN 224
>gi|254432163|ref|ZP_05045866.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
PCC 7001]
gi|197626616|gb|EDY39175.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanobium sp.
PCC 7001]
Length = 196
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G+P+ + A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIVFLGEPVTAESANRIVAQLLFLEAEDPEKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLTHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|445498475|ref|ZP_21465330.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
gi|444788470|gb|ELX10018.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
Length = 204
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 82/131 (62%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + R+IF+ + A ++QL+ L + D DI +Y+N PGGS+Y+ +A+
Sbjct: 26 FDIYSRLLKERVIFLVGEVTEQSANLIVAQLLFLESDDPGKDISLYINSPGGSVYAGMAV 85
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G AAS + +LA G G RYA+PNARIM++QP GS G D++
Sbjct: 86 YDTMQFIKPDVSTLCTGFAASMGSFLLAAGAIGKRYALPNARIMMHQPHGGSQGVAADIE 145
Query: 216 RQVNEAVISRH 226
Q E + RH
Sbjct: 146 IQAREVLYQRH 156
>gi|88801527|ref|ZP_01117055.1| ATP-dependent Clp protease proteolytic subunit 2 [Polaribacter
irgensii 23-P]
gi|88782185|gb|EAR13362.1| ATP-dependent Clp protease proteolytic subunit 2 [Polaribacter
irgensii 23-P]
Length = 220
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 9/167 (5%)
Query: 82 NPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
P +M +D+ S L +RIIF+G IN VA +QL+ L ++D + DI +Y
Sbjct: 30 TPYIMEERQMNITQMDVFSRLMMDRIIFLGTGINDQVANIIQAQLLFLESVDANKDISIY 89
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG +Y+ L IYD M +IKP V T+C G+AAS A+++ GEKG R A+P++RIM++
Sbjct: 90 INSPGGGVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLMCAGEKGKRSALPHSRIMIH 149
Query: 202 QPQSGSGGHVEDVKRQVNE---------AVISRHVSLSFLLLHTLND 239
QP G+ G D++ E A+I+ H S +H +D
Sbjct: 150 QPLGGAQGQASDIEITAREIMKLKDELYAIIASHSGQSIEKVHKDSD 196
>gi|403387723|ref|ZP_10929780.1| ATP-dependent Clp protease proteolytic subunit [Clostridium sp.
JC122]
Length = 194
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 80/118 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +NS A ++QL+ L + D D DI +Y+N PGGSI +AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNSTTASLIVAQLLFLESEDPDKDIYLYINSPGGSITDGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M++IKP V T+C G+AAS A +L+ G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMNYIKPDVVTICTGLAASMGAFLLSSGAKGKRFALPNSEIMIHQPLGGFKGQATDI 136
>gi|262037349|ref|ZP_06010814.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
goodfellowii F0264]
gi|261748606|gb|EEY35980.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
goodfellowii F0264]
Length = 189
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 82/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G + +A I+QL+ L D++ DI+MY+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGGEVEDNIANSIIAQLLFLDAQDKEKDIVMYINSPGGVVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M IK V TVC G AAS A++LA G KG RY++PN+R+M++QP G+ G D++
Sbjct: 78 DTMRHIKADVSTVCIGQAASMGAVLLASGAKGKRYSLPNSRVMIHQPSGGARGQATDIQI 137
Query: 217 QVNE 220
Q E
Sbjct: 138 QAKE 141
>gi|255102472|ref|ZP_05331449.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
difficile QCD-63q42]
Length = 194
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G +N A ++QL+ L D D DI +
Sbjct: 3 LVPVVVEQTGRGERSYDIFSRLLKDRIIFLGDQVNDATAGLIVAQLLFLEAEDPDKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI S +AIYD M +IKP V T+C G+AAS A +LA G KG R A+PN+ IM+
Sbjct: 63 YINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRLALPNSEIMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G D++
Sbjct: 123 HQPLGGAQGQATDIE 137
>gi|124007704|ref|ZP_01692407.1| Clp protease [Microscilla marina ATCC 23134]
gi|123986826|gb|EAY26598.1| Clp protease [Microscilla marina ATCC 23134]
Length = 195
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 91/142 (64%), Gaps = 11/142 (7%)
Query: 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA 154
P+D+ S L +RIIF+G ++ VA +QL+ L ++D DIL+Y+N PGGS+Y+ L
Sbjct: 15 PIDVFSRLISDRIIFLGTAVDDNVANVITAQLLFLESVDAKKDILLYINSPGGSVYAGLG 74
Query: 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
IYD M ++ P + T+C G+AAS A++L GG G R A+ +ARIM++QP G+ G D+
Sbjct: 75 IYDTMQYVGPDIATICTGMAASFGAVLLTGGAPGKRSALEHARIMIHQPHGGAQGQASDI 134
Query: 215 ----------KRQVNEAVISRH 226
KR++NE +I++H
Sbjct: 135 EITAKQYVLLKRELNE-IIAKH 155
>gi|452750504|ref|ZP_21950251.1| ATP-dependent Clp protease proteolytic subunit [alpha
proteobacterium JLT2015]
gi|451961698|gb|EMD84107.1| ATP-dependent Clp protease proteolytic subunit [alpha
proteobacterium JLT2015]
Length = 212
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 87/144 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RI+F+ PI +A +QL+ L + + DI MY+N PGG + + +AI
Sbjct: 23 FDIYSRLLRERIVFVTGPIEDHMATLITAQLLYLESENPKKDIYMYINSPGGVVTAGMAI 82
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
+D M +I+P+VGTVC G AAS + +L+ GE GMR A+ NARIM++QP G+ G D++
Sbjct: 83 HDTMQYIRPRVGTVCIGQAASMGSFLLSAGEPGMRVALTNARIMIHQPSGGAQGQATDIE 142
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
Q E + RH + +T D
Sbjct: 143 IQAKEILRIRHRMNELMAKYTGQD 166
>gi|113953920|ref|YP_730624.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
CC9311]
gi|113881271|gb|ABI46229.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. CC9311]
Length = 196
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ S A R ++QL+ L D + +I +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKEIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YVNSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGASGQASDIRIQADE 140
>gi|221194696|ref|ZP_03567753.1| Clp protease [Atopobium rimae ATCC 49626]
gi|221185600|gb|EEE17990.1| Clp protease [Atopobium rimae ATCC 49626]
Length = 206
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 94/149 (63%), Gaps = 4/149 (2%)
Query: 82 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N PL+P V+ TP G D+ S L +RI+F+G+P+ A I+QL+ L + D + D
Sbjct: 6 NTPLIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEPVTRDSANLVIAQLLHLESQDPEKD 65
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y++ PGG +Y+ L I D M++IKP V T+C G+AAS AA++LA G KG R A+PN+
Sbjct: 66 ISLYIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMAAVLLAAGAKGKRLALPNSM 125
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
++++QP SG G D++ +E R
Sbjct: 126 VLIHQPSSGVQGQQTDIQIVADETKWLRQ 154
>gi|268680774|ref|YP_003305205.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Sulfurospirillum deleyianum DSM 6946]
gi|268618805|gb|ACZ13170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurospirillum deleyianum DSM 6946]
Length = 196
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 84/131 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + IN +VA ++QL+ L D + DI +Y+N PGG I S +IY
Sbjct: 20 DIYSRLLKDRIIMLSGEINDVVASSIVAQLLFLEAEDPEKDIYLYINSPGGVITSGFSIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP + T+C G AAS A +L+ G KG RYA+PNARIM++QP G+ G D++
Sbjct: 80 DTMNYIKPDISTICIGQAASMGAFLLSAGTKGKRYALPNARIMIHQPLGGAQGQATDIEI 139
Query: 217 QVNEAVISRHV 227
Q E + + V
Sbjct: 140 QAKEILRMKQV 150
>gi|342731984|ref|YP_004770823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Arthromitus sp. SFB-mouse-Japan]
gi|384455401|ref|YP_005667995.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Arthromitus sp. SFB-mouse-Yit]
gi|417962125|ref|ZP_12604399.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-2]
gi|417963799|ref|ZP_12605667.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-3]
gi|417967677|ref|ZP_12608746.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-co]
gi|418016623|ref|ZP_12656188.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|418372234|ref|ZP_12964326.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-mouse-SU]
gi|342329439|dbj|BAK56081.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Arthromitus sp. SFB-mouse-Japan]
gi|345506958|gb|EGX29252.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|346983743|dbj|BAK79419.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Arthromitus sp. SFB-mouse-Yit]
gi|380331068|gb|EIA22177.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-2]
gi|380331769|gb|EIA22747.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-3]
gi|380340900|gb|EIA29436.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-co]
gi|380341903|gb|EIA30348.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Arthromitus sp. SFB-mouse-SU]
Length = 194
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 79/118 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G +N + A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKERIIFLGDEVNDVTASLVVAQLLFLESEDTDKDIHLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKP V T+C G+AAS A +L+ G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNSEIMIHQPLGGFRGQATDI 136
>gi|255284021|ref|ZP_05348576.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bryantella
formatexigens DSM 14469]
gi|255265474|gb|EET58679.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Marvinbryantia formatexigens DSM 14469]
Length = 194
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ + + A ++QL+ L + D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSANLIVAQLLFLESEDPAKDIQLYINSPGGSVSAGWAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V T+C G+AAS A +LAGG KG R+A+PNA+IM++QP G+ G D+K
Sbjct: 79 DTMQYIKCDVSTICMGMAASMGAFLLAGGAKGKRFALPNAQIMIHQPSGGAKGQASDIKI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + SR +L +T
Sbjct: 139 VAEEILKSRKRLNEYLAANT 158
>gi|440684999|ref|YP_007159794.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
cylindrica PCC 7122]
gi|428682118|gb|AFZ60884.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
cylindrica PCC 7122]
Length = 232
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ +VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDVVANSIVAQLLFLDAEDSEKDIQL 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTSGAAGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q E
Sbjct: 149 HQPLGGAQGQAIDIEIQARE 168
>gi|402814642|ref|ZP_10864236.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
alvei DSM 29]
gi|402508489|gb|EJW19010.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
alvei DSM 29]
Length = 193
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N +VA I+QL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTEVNDLVANSIIAQLLFLAADDPEKDIHLYINSPGGSISAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIE 137
>gi|427706272|ref|YP_007048649.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc sp. PCC
7107]
gi|427358777|gb|AFY41499.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc sp. PCC
7107]
Length = 232
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G I+ VA ++QL+ L + D + DI +
Sbjct: 29 IVPTVVEQSGMGERAFDIYSRLLRERIIFLGTAIDDTVANSIVAQLLFLDSEDAEKDIQL 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +LA G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPNVVTICFGLAASMGAFLLAAGTAGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKGQLNQLLAHHT 184
>gi|406872664|gb|EKD23092.1| hypothetical protein ACD_83C00060G0001 [uncultured bacterium]
Length = 201
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ D+ S L ++RIIFIG I+ +A I+QL+ LA+ D D
Sbjct: 3 NQYLIPTVLEKSQYGERAYDIYSRLLKDRIIFIGDVIDDEIANLIIAQLLFLASEDSSKD 62
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGGS+ + LAI+D M+++KP V T+C G+AAS A +LA G+KG R A+PN++
Sbjct: 63 IQLYINSPGGSVSAGLAIFDTMNYVKPDVSTMCIGMAASMGAFLLAAGKKGKRLALPNSK 122
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISR 225
++++Q SG G D+K E + R
Sbjct: 123 VLIHQVMSGFEGQAADIKIHAEETLKVR 150
>gi|212640342|ref|YP_002316862.1| ATP-dependent Clp protease proteolytic subunit [Anoxybacillus
flavithermus WK1]
gi|433447199|ref|ZP_20410832.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anoxybacillus
flavithermus TNO-09.006]
gi|226706440|sp|B7GL34.1|CLPP_ANOFW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|212561822|gb|ACJ34877.1| ATP-dependent Clp protease proteolytic subunit (class III
heat-shock protein) [Anoxybacillus flavithermus WK1]
gi|432000033|gb|ELK20939.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anoxybacillus
flavithermus TNO-09.006]
Length = 196
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQGQATEIE 137
>gi|313892932|ref|ZP_07826509.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella sp. oral taxon 158 str. F0412]
gi|313442285|gb|EFR60700.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella sp. oral taxon 158 str. F0412]
Length = 197
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 83/130 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG RYA+P+AR+M++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGTKGKRYALPHARVMIHQPLGGVQGQASEIEI 137
Query: 217 QVNEAVISRH 226
E + R
Sbjct: 138 HAREILRMRE 147
>gi|223973663|gb|ACN31019.1| unknown [Zea mays]
Length = 280
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 88/137 (64%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF++RII G P+ +A ++QL+ L ID DI+MY+N PGGS+ + +AI+D M
Sbjct: 98 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPTKDIIMYVNSPGGSVTAGMAIFDTM 157
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D++ Q N
Sbjct: 158 KHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQAN 217
Query: 220 EAVISRHVSLSFLLLHT 236
E + + +L HT
Sbjct: 218 EMLHHKANLNGYLAYHT 234
>gi|115483692|ref|NP_001065516.1| Os10g0580800 [Oryza sativa Japonica Group]
gi|12039365|gb|AAG46151.1|AC018727_3 putative Clp protease [Oryza sativa Japonica Group]
gi|31433719|gb|AAP55198.1| ATP-dependent Clp protease proteolytic subunit 3, putative,
expressed [Oryza sativa Japonica Group]
gi|113640048|dbj|BAF27353.1| Os10g0580800 [Oryza sativa Japonica Group]
gi|215737516|dbj|BAG96646.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737683|dbj|BAG96813.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737745|dbj|BAG96875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740822|dbj|BAG96978.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222613342|gb|EEE51474.1| hypothetical protein OsJ_32613 [Oryza sativa Japonica Group]
Length = 293
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 84/130 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ +L R RI+F+G I +A +SQL+ L +D ++DI +++N PGGS+ + +AIY
Sbjct: 80 DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAVDPNSDIRLFVNSPGGSLSATMAIY 139
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++ V T+ G+A S A+IIL GG KG R+AMPN RIM++QP G+ G DV+
Sbjct: 140 DVMQLVRADVSTIGLGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 199
Query: 217 QVNEAVISRH 226
Q E + ++
Sbjct: 200 QAKEILTNKR 209
>gi|409990366|ref|ZP_11273750.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis str. Paraca]
gi|291567407|dbj|BAI89679.1| ATP-dependent Clp protease proteolytic subunit [Arthrospira
platensis NIES-39]
gi|409938772|gb|EKN80052.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis str. Paraca]
Length = 200
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 97/158 (61%), Gaps = 15/158 (9%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R+RI+F+G +NS VA ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGTQVNSDVANLIVAQLLFLDAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + L I+D M+ I+P V TVC G+AAS A +L+ G KG RY++P++RIM+
Sbjct: 61 YINSPGGGVNAGLGIFDTMNHIRPDVCTVCLGLAASMGAFLLSAGAKGKRYSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDV----------KRQVNEAVISRHVS 228
+QP G+ G D+ KRQ+NE +++H S
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYLKRQLNEN-LAKHTS 157
>gi|168335354|ref|ZP_02693449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Epulopiscium
sp. 'N.t. morphotype B']
Length = 193
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + +N + + ++QL+ L D D DI++Y+N PGGSI +AIY
Sbjct: 19 DIYSRLLKDRIILLCDEVNHVTSSLTVAQLLFLEAEDPDKDIMLYINSPGGSIVDGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LAGG+KG R A+PNA IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICMGMAASMGAFLLAGGQKGKRLALPNAEIMIHQPLGGTRGQATDIQ 137
>gi|429743956|ref|ZP_19277482.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sp. oral taxon 020 str. F0370]
gi|429164090|gb|EKY06250.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sp. oral taxon 020 str. F0370]
Length = 211
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 6/161 (3%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L + RIIF+ P+N A ++Q++ L + + D D
Sbjct: 7 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDDTANLVVAQMLFLESENPDKD 66
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGGS+ + ++++D M++IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 67 IFLYINSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPNSR 126
Query: 198 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
IM++QP G GG D++ E + + FL HT
Sbjct: 127 IMIHQPLISGGLGGQASDIEIHARELIKIKQKLNEFLAKHT 167
>gi|298714280|emb|CBJ27396.1| chloroplast clp protease P [Ectocarpus siliculosus]
Length = 264
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 88/142 (61%)
Query: 86 MPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCP 145
MP V +D+ S L ++RI+ +GQ +N V ++QL+ LA D + DI +Y+N P
Sbjct: 66 MPTVGEGSEQMDVMSRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSP 125
Query: 146 GGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
GGS+ + LAIYD M +I V TVCFG+AAS A +L G G R ++PN+RIM++QP
Sbjct: 126 GGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSAGKRKSLPNSRIMIHQPLG 185
Query: 206 GSGGHVEDVKRQVNEAVISRHV 227
G+ G D++ Q E + ++ +
Sbjct: 186 GAAGQAADIEIQAKEILFTKRL 207
>gi|238018907|ref|ZP_04599333.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
gi|237864391|gb|EEP65681.1| hypothetical protein VEIDISOL_00767 [Veillonella dispar ATCC 17748]
Length = 197
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 83/130 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG RYA+P+AR+M++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRYALPHARVMIHQPLGGVQGQASEIEI 137
Query: 217 QVNEAVISRH 226
E + R
Sbjct: 138 HAREILRMRE 147
>gi|372270957|ref|ZP_09507005.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Marinobacterium stanieri S30]
Length = 211
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 86/143 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ P+ +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 33 DIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLEAENPDKDIHLYINSPGGSVTAGMAIY 92
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A +LAGG KG R+A+PNAR+M++QP G G D++
Sbjct: 93 DTMQFIKPDVSTMCIGQAASMGAFLLAGGAKGKRFALPNARVMIHQPLGGYQGQATDIEI 152
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + R L HT D
Sbjct: 153 HTKEILSIREKLNRLLAEHTGQD 175
>gi|374307960|ref|YP_005054391.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Filifactor
alocis ATCC 35896]
gi|374308266|ref|YP_005054697.1| hypothetical protein [Filifactor alocis ATCC 35896]
gi|320120411|gb|EFE27574.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Filifactor
alocis ATCC 35896]
gi|320120478|gb|ADW16163.1| hypothetical protein HMPREF0389_01718 [Filifactor alocis ATCC
35896]
Length = 196
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 93/152 (61%), Gaps = 5/152 (3%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L ++RIIF+ +N + + ++Q++ L D D DI+ Y
Sbjct: 6 VPVVVEQSGRGERSYDIYSRLLKDRIIFLSDEVNDVTSSLVVAQMLFLEAEDPDKDIMFY 65
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGSI S +AI+D M +IK V T+C G+AAS A +LA GEKG RYA+PNA +M++
Sbjct: 66 INSPGGSITSGMAIFDTMQYIKCDVCTICIGMAASMGAFLLAAGEKGKRYALPNAEVMIH 125
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLL 233
QP G+ G D++ Q E ++ L+ +L
Sbjct: 126 QPLGGAQGQATDIQIQA-ERILKMKDKLNIIL 156
>gi|320103932|ref|YP_004179523.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
pallida ATCC 43644]
gi|319751214|gb|ADV62974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
pallida ATCC 43644]
Length = 252
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 90/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+ LS +L NRIIF+ PI++++A I Q + L + I Y+N PGGS+YS LA+
Sbjct: 38 MTLSDLLLENRIIFLEGPIDNVIANHLIKQFLYLQFENRTQGISFYINSPGGSVYSTLAV 97
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++ + T C G+AAS AA++LAGG KG R+++P+++IM++QP GG V D++
Sbjct: 98 YDTMQFVNCPIATYCIGMAASGAAVLLAGGTKGKRFSLPHSKIMIHQPSGYVGGQVSDIE 157
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q +E + ++ + L HT
Sbjct: 158 IQADEILKNKKLINEILAKHT 178
>gi|152989915|ref|YP_001355637.1| ATP-dependent Clp protease proteolytic subunit [Nitratiruptor sp.
SB155-2]
gi|166201830|sp|A6Q1C1.1|CLPP_NITSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|151421776|dbj|BAF69280.1| ATP-dependent Clp protease, proteolytic subunit [Nitratiruptor sp.
SB155-2]
Length = 196
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 81/124 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + IN VA ++QL+ L D D DI +Y+N PGG I S ++IY
Sbjct: 20 DIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLYINSPGGVITSGMSIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V T+C G AAS A +L+ G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 80 DTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPLGGAQGQATDIEI 139
Query: 217 QVNE 220
Q E
Sbjct: 140 QAKE 143
>gi|119953393|ref|YP_945602.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
91E135]
gi|119862164|gb|AAX17932.1| ATP-dependent Clp protease proteolytic subunit [Borrelia turicatae
91E135]
Length = 199
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 4/142 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R+RIIF+ IN + A I+QL+ L + D DI +
Sbjct: 9 LVPTVVEHTGNYERVFDIYSRLLRDRIIFLSGEINDVRADTVIAQLLFLESEDSKKDIYV 68
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI + LAIYD M +IKP V T+C G AAS AA +LAGG G R ++ +RIM+
Sbjct: 69 YINSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMAAFLLAGGAIGKRESLSYSRIMI 128
Query: 201 NQPQSGSGGHVEDVKRQVNEAV 222
+QP G GG D+ Q NE +
Sbjct: 129 HQPWGGIGGQASDISIQANEII 150
>gi|390559019|ref|ZP_10243393.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Nitrolancetus hollandicus Lb]
gi|390174409|emb|CCF82685.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Nitrolancetus hollandicus Lb]
Length = 205
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 85/126 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R+RIIF+G P++ +A ++Q++ L + + DI +Y+N PGG +Y+ LAIY
Sbjct: 26 DIYSRLLRDRIIFLGTPVDDQIANVIVAQMLFLEHENPEQDIKLYINSPGGLVYAGLAIY 85
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M I+P V T C G+ AS A++LAGG KG R+A+P++RI+++Q SG G V D++
Sbjct: 86 DTMQMIRPDVATYCVGLGASMGAVLLAGGAKGKRFALPHSRILIHQGSSGFRGSVPDIEI 145
Query: 217 QVNEAV 222
Q E +
Sbjct: 146 QARETI 151
>gi|352093978|ref|ZP_08955149.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8016]
gi|351680318|gb|EHA63450.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8016]
Length = 209
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ S A R ++QL+ L D + +I +
Sbjct: 14 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKEIFL 73
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 74 YVNSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMI 133
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q +E + L L H L+D
Sbjct: 134 HQPLGGASGQASDIRIQADEILF-----LKDRLNHELSD 167
>gi|329114674|ref|ZP_08243433.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
pomorum DM001]
gi|326696154|gb|EGE47836.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
pomorum DM001]
Length = 237
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 100/175 (57%), Gaps = 11/175 (6%)
Query: 73 YKIISGKNDNPP-------LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQR 121
Y +SG D P L+P V+ T G D+ S L + RIIF+ P+ VA
Sbjct: 15 YTGMSGMRDRDPVEIFSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASL 74
Query: 122 AISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 181
+QL+ L +++ + +I Y+N PGG + + LAIYD M +I+ V TVC G AAS +++
Sbjct: 75 ISAQLLYLESVNPNKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLL 134
Query: 182 LAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
LAGGEKG R+A+PNAR+M++QP G+ G D++ Q E +I R HT
Sbjct: 135 LAGGEKGRRFALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQKLNEIYREHT 189
>gi|313673004|ref|YP_004051115.1| ATP-dependent clp protease proteolytic subunit clpp
[Calditerrivibrio nitroreducens DSM 19672]
gi|312939760|gb|ADR18952.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Calditerrivibrio nitroreducens DSM 19672]
Length = 195
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++Q++ L D DI +Y+N PGG I S LAI+
Sbjct: 20 DIYSRLLKDRIIFLGTAIDDTVANSIVAQMLFLEAEDPKKDIYLYINSPGGVITSGLAIF 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V T+C G AAS A++LA G KG R+A+PN RIM++QP G G +D++
Sbjct: 80 DTMNYIKPDVSTICIGQAASMGAVLLACGAKGKRFALPNTRIMIHQPLGGFQGQAKDIEI 139
Query: 217 QVNE 220
Q E
Sbjct: 140 QAKE 143
>gi|374619902|ref|ZP_09692436.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium HIMB55]
gi|374303129|gb|EHQ57313.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium HIMB55]
Length = 205
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 86/141 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + R+IFI PI +A ++QL+ L + + D DI +Y+N PGGS+ + L+I
Sbjct: 30 FDIYSRLLKERVIFIVGPIEDQMANLVVAQLLFLESENPDKDIHIYINSPGGSVTAGLSI 89
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP+V T+C G AAS A +L+GG KG R +PNAR M++QP G+ G D++
Sbjct: 90 YDTMQFIKPEVSTMCLGQAASMGAFLLSGGTKGKRLILPNARTMIHQPSGGAQGQATDIE 149
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + R L HT
Sbjct: 150 IQAKEILFLRERLNRLLADHT 170
>gi|17546430|ref|NP_519832.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
solanacearum GMI1000]
gi|83745913|ref|ZP_00942970.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
solanacearum UW551]
gi|207743049|ref|YP_002259441.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum IPO1609]
gi|300691404|ref|YP_003752399.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum PSI07]
gi|300703972|ref|YP_003745574.1| proteolytic subunit of clpa-clpp ATP-dependent serine protease
[Ralstonia solanacearum CFBP2957]
gi|386333413|ref|YP_006029583.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum Po82]
gi|421888083|ref|ZP_16319197.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum K60-1]
gi|421898197|ref|ZP_16328564.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum MolK2]
gi|22653696|sp|Q8XYP7.1|CLPP_RALSO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|17428728|emb|CAD15413.1| probable atp-atp-dependent clp protease proteolytic subunit
(endopeptidase clp). transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|83727603|gb|EAP74724.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
solanacearum UW551]
gi|206589403|emb|CAQ36365.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum MolK2]
gi|206594446|emb|CAQ61373.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum IPO1609]
gi|299066731|emb|CBJ37925.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum CMR15]
gi|299071635|emb|CBJ42959.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum CFBP2957]
gi|299078464|emb|CBJ51116.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum PSI07]
gi|334195862|gb|AEG69047.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum Po82]
gi|344167643|emb|CCA79883.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[blood disease bacterium R229]
gi|344174667|emb|CCA86475.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia syzygii R24]
gi|378966546|emb|CCF95945.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum K60-1]
Length = 217
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R+IF+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LA+YD M ++KP V T+C G+AAS A +LA G KG RYA+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRE 170
>gi|319789118|ref|YP_004150751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
ammonificans HB-1]
gi|317113620|gb|ADU96110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
ammonificans HB-1]
Length = 200
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ +G PI+ VA ++QL+ L D + DI +Y+N PGG + + LAIY
Sbjct: 24 DIYSRLLKDRIVMLGTPIDDHVANLIVAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++LA G KG R+A+P+ARIM++QP G G D++
Sbjct: 84 DTMQYIKPDVVTICMGQAASMGAVLLAAGAKGKRFALPHARIMIHQPLGGFQGQATDIEI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + + + L HT
Sbjct: 144 HAKEILRLKRMLNEILAKHT 163
>gi|331003803|ref|ZP_08327295.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
oral taxon 107 str. F0167]
gi|330411995|gb|EGG91392.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
oral taxon 107 str. F0167]
Length = 193
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L ++RIIF+G+ +N + A ++Q++ L + D DI +Y+N PGGS+ + +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTASLVVAQILFLESEDPTKDINLYINSPGGSVVAGMAI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++K V T+C G+AAS A +LAGG KG RYA+PNA IM++QP G+ G ++
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMGAFLLAGGTKGKRYALPNAEIMIHQPSGGAQGQATEI- 136
Query: 216 RQVNEAVISRHVSLSFLLLHTLN 238
R E ++ ++ +L N
Sbjct: 137 RIAAEQILKTKEKMNKILAENTN 159
>gi|338532521|ref|YP_004665855.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus fulvus
HW-1]
gi|337258617|gb|AEI64777.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus fulvus
HW-1]
Length = 203
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
DL S L ++RII +G P+N VA ++QL+ L + D D I +Y+N PGGS+ + LAIY
Sbjct: 18 DLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G AAS A++L G KG RYA+PN+RIM++QP G+ G D+
Sbjct: 78 DTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATDIDI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R ++ HT
Sbjct: 138 QAKEILRLRSYINGLIVKHT 157
>gi|254495062|ref|ZP_05107986.1| Clp protease [Polaribacter sp. MED152]
gi|85819412|gb|EAQ40569.1| Clp protease [Polaribacter sp. MED152]
Length = 219
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 11/167 (6%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G IN VA +QL+ L ++D + DI +Y+
Sbjct: 31 PYIMEERQMNITQMDVFSRLMMDRIIFLGTGINDQVANIIQAQLLFLESVDANKDISIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGG +Y+ L IYD M +IKP V T+C G+AAS A+++ GEKG R A+P++RIM++Q
Sbjct: 91 NSPGGGVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLMCAGEKGKRSALPHSRIMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNE---------AVISRHVSLSFLLLHTLNDS 240
P G+ G D++ E A+I+ H + +H NDS
Sbjct: 151 PLGGAQGQASDIEITAREILKLKDELYAIIANHSGQTVEKVH--NDS 195
>gi|434388321|ref|YP_007098932.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chamaesiphon
minutus PCC 6605]
gi|428019311|gb|AFY95405.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Chamaesiphon
minutus PCC 6605]
Length = 215
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 86/141 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
DL S L R RIIF+G +N VA ++Q++ L D + DI +Y+N PGGSI + +AI
Sbjct: 40 FDLYSRLLRERIIFLGGEVNDGVADTLVAQMLFLEAEDPEKDIQLYINSPGGSITAGMAI 99
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T C+G+AAS A +LA G G R ++PN+RIM++QP G+ G D++
Sbjct: 100 YDTMQQIRPDVATTCYGLAASMGAFLLASGAPGKRRSLPNSRIMIHQPLGGAQGQAVDIE 159
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + ++ L HT
Sbjct: 160 IQAREILYLKNHLNGLLAYHT 180
>gi|154148860|ref|YP_001405639.1| ATP-dependent Clp protease proteolytic subunit [Campylobacter
hominis ATCC BAA-381]
gi|166201810|sp|A7HZE8.1|CLPP_CAMHC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|153804869|gb|ABS51876.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Campylobacter
hominis ATCC BAA-381]
Length = 195
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 80/124 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ + IN VA ++QL+ L D D DI +Y+N PGG + S +IY
Sbjct: 18 DIYSRLLKDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYLYINSPGGVVTSGFSIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V T+C G AAS A +L+ GEKG RYA+PNARIM++QP G+ G D++
Sbjct: 78 DTMNYIKPAVSTICIGQAASMGAFLLSCGEKGKRYALPNARIMIHQPLGGAQGQATDIEI 137
Query: 217 QVNE 220
E
Sbjct: 138 TTKE 141
>gi|336322456|ref|YP_004602423.1| ATP-dependent Clp protease proteolytic subunit [Flexistipes
sinusarabici DSM 4947]
gi|336106037|gb|AEI13855.1| ATP-dependent Clp protease proteolytic subunit [Flexistipes
sinusarabici DSM 4947]
Length = 195
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 82/124 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI +A I+QL+ L D D DI +Y+N PGG I S LAI
Sbjct: 20 DIYSRLLKDRIIFMGTPIEDNLANTIIAQLLFLEADDPDKDIHLYINSPGGVITSGLAIL 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D +++IKP V T+C G AAS AA++LA G G RY++PNARIM++QP G G +D++
Sbjct: 80 DTINYIKPDVSTICLGQAASMAAVLLACGASGKRYSVPNARIMIHQPLGGFQGQAKDIEI 139
Query: 217 QVNE 220
E
Sbjct: 140 HAKE 143
>gi|224534182|ref|ZP_03674761.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
spielmanii A14S]
gi|224514543|gb|EEF84858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
spielmanii A14S]
Length = 197
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN + A I+QL+ L + D + DI +
Sbjct: 7 LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDLKADTVIAQLLFLESEDSNKDIYL 66
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LA G KG R ++ +RIM+
Sbjct: 67 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAAGAKGKRESLTYSRIMI 126
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 127 HQPWGGISGQASDINIQANE 146
>gi|428312433|ref|YP_007123410.1| ATP-dependent Clp protease proteolytic subunit ClpP [Microcoleus
sp. PCC 7113]
gi|428254045|gb|AFZ20004.1| ATP-dependent Clp protease proteolytic subunit ClpP [Microcoleus
sp. PCC 7113]
Length = 230
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 85/141 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+G ++ VA I+QL+ L D + DI +Y+N PGGS+ + +A+
Sbjct: 42 FDIYSRLLRERIIFLGTQVDDTVADSIIAQLLFLDAEDPEKDIQLYINSPGGSVTAGMAM 101
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+CFG+AAS A +L G G R A+PN+RIM++QP G+ G D++
Sbjct: 102 YDTMQQIRPDVVTICFGLAASMGAFLLTAGAPGKRMALPNSRIMIHQPLGGAQGQAIDIE 161
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 162 IQAREILYHKRTLNQLLAHHT 182
>gi|218961379|ref|YP_001741154.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Candidatus Cloacamonas acidaminovorans]
gi|167730036|emb|CAO80948.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Candidatus Cloacamonas acidaminovorans str.
Evry]
Length = 194
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 84/129 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G I +A ++QL+ L D + DI MY+N PGG I + LAIY
Sbjct: 19 DIYSRLLKDRIVFVGGVIEDNLANTVVAQLLHLEGEDPERDIYMYINSPGGIISAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP+V T+C G AAS AA++LA G G R A+PN+RIM++QP G+ G D++
Sbjct: 79 DTMQYIKPRVSTICIGQAASMAAVLLAAGAPGKRSALPNSRIMIHQPMGGAQGQATDIEI 138
Query: 217 QVNEAVISR 225
Q E + R
Sbjct: 139 QAKEILYLR 147
>gi|442323969|ref|YP_007363990.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus
stipitatus DSM 14675]
gi|441491611|gb|AGC48306.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus
stipitatus DSM 14675]
Length = 203
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
DL S L ++RII +G P+N VA ++QL+ L + D D I +Y+N PGGS+ + LAIY
Sbjct: 18 DLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G AAS A++L G KG RYA+PN+RIM++QP G+ G D+
Sbjct: 78 DTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATDIDI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R ++ HT
Sbjct: 138 QAKEILRLRSYLNGLIVKHT 157
>gi|332528101|ref|ZP_08404132.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rubrivivax
benzoatilyticus JA2]
gi|332112672|gb|EGJ12465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rubrivivax
benzoatilyticus JA2]
Length = 202
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+ P+N VA +QL+ L + + D DI +
Sbjct: 11 MVPMVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQVANLVCAQLLFLESENPDKDISL 70
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L+I+D M++IKP+V T+C G+AAS + +L G KG R+A+PN+R+M+
Sbjct: 71 YINSPGGSVSAGLSIFDTMNFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALPNSRVMI 130
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + +R
Sbjct: 131 HQPSGGAQGQASDIEIQAREIIKTRE 156
>gi|251772219|gb|EES52789.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Leptospirillum ferrodiazotrophum]
Length = 201
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 80/124 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R+RII +G PI+ VA I+Q++ L + D DI +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLRDRIIILGTPIDDTVANLVIAQMLFLESEDSSKDINLYINSPGGIVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D + +IKP V T+C G AAS A +L+ G KG RYA+PNARIM++QP G G D++
Sbjct: 78 DTIKFIKPDVSTICIGQAASMGAFLLSAGAKGKRYALPNARIMIHQPMGGFQGQATDIEI 137
Query: 217 QVNE 220
E
Sbjct: 138 HARE 141
>gi|428300044|ref|YP_007138350.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
gi|428236588|gb|AFZ02378.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 6303]
Length = 231
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +Y+N PGGS+Y+ +AI
Sbjct: 43 FDIYSRLLRERIIFLGTPIDDNVANSIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAI 102
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD + I+P V T+CFG+AAS A +L G G R ++P++RIM++QP G+ G D++
Sbjct: 103 YDTIQQIRPDVVTICFGLAASMGAFLLTSGTAGKRMSLPDSRIMIHQPLGGAQGQAIDIE 162
Query: 216 RQVNEAVISRHVSLSFLLLH 235
Q E ++ L+ ++ H
Sbjct: 163 IQARE-ILYVKAELNKMMAH 181
>gi|427724133|ref|YP_007071410.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7376]
gi|427355853|gb|AFY38576.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7376]
Length = 199
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ +N +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIESSGRGERAFDIYSRLLRERIVFLGQQVNDEIANLIVAQLLFLEADDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M+ ++P V T+C G+AAS A +L+ GEKG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGMGIFDTMNQVRPDVCTICIGLAASMGAFLLSAGEKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q E
Sbjct: 121 HQPLGGAQGQATDIEIQAKE 140
>gi|414153433|ref|ZP_11409759.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455112|emb|CCO07662.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 195
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 84/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI+ VA I+Q + L D + DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHVADLVIAQFLFLEAEDPEKDIHLYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G A+S + +LA G KG RYA+P ARIM++QP G G D+
Sbjct: 80 DTMQYIKPPVSTICLGQASSMGSFLLAAGTKGKRYALPMARIMIHQPLGGVQGQATDIDI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + + + L HT
Sbjct: 140 HAKEILRMKDLLNEKLAYHT 159
>gi|415938744|ref|ZP_11555478.1| ATP-dependent Clp protease, proteolytic subunit [Herbaspirillum
frisingense GSF30]
gi|407759378|gb|EKF69073.1| ATP-dependent Clp protease, proteolytic subunit [Herbaspirillum
frisingense GSF30]
Length = 204
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +
Sbjct: 13 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISL 72
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AI+D M +IKP+V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 73 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 132
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 133 HQPLGGAQGQASDIEIQAREILYLRE 158
>gi|345874540|ref|ZP_08826351.1| endopeptidase [Neisseria weaveri LMG 5135]
gi|417957883|ref|ZP_12600801.1| endopeptidase [Neisseria weaveri ATCC 51223]
gi|343967629|gb|EGV35872.1| endopeptidase [Neisseria weaveri ATCC 51223]
gi|343970451|gb|EGV38628.1| endopeptidase [Neisseria weaveri LMG 5135]
Length = 207
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Query: 81 DNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDA 136
+N L+P V+ G D+ S L + RIIF+ P+N A ++QL+ L + + D
Sbjct: 6 NNSYLVPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQLLFLESENPDK 65
Query: 137 DILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA 196
DI +Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L+ G KG R+A+PN+
Sbjct: 66 DIFLYINSPGGSVTAGMSIYDTMKFIKPDVSTLCLGQAASMGAFLLSAGTKGKRFALPNS 125
Query: 197 RIMLNQP--QSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
RIM++QP G GG D++ E + + L H+ D
Sbjct: 126 RIMIHQPLISGGLGGQASDIEIHARELIKIKEKLNRLLAEHSGQD 170
>gi|357400857|ref|YP_004912782.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|386356918|ref|YP_006055164.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337767266|emb|CCB75977.1| ATP-dependent Clp protease proteolytic subunit 4 [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365807426|gb|AEW95642.1| ATP-dependent Clp protease proteolytic subunit [Streptomyces
cattleya NRRL 8057 = DSM 46488]
Length = 238
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D + LF R++F+G ++ A ++QL+ L + D D DI +Y+N PGGS+ S++AIY
Sbjct: 51 DPYAKLFEERVVFLGTQVDDTSANDIMAQLLCLESTDPDRDISIYINSPGGSMTSLMAIY 110
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS-GSGGHVEDVK 215
D M +I+P++ TVC G A+S AA+ILA G G R A+PNA+I+++QP S GS G V D++
Sbjct: 111 DTMQFIRPQIQTVCIGQASSAAAVILAAGTPGKRCALPNAKILIHQPASQGSEGQVSDLE 170
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + R + + L HT
Sbjct: 171 IQAAEILRVRSLVETILAKHT 191
>gi|452973448|gb|EME73270.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sonorensis
L12]
Length = 198
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|386392769|ref|ZP_10077550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. U5L]
gi|385733647|gb|EIG53845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. U5L]
Length = 204
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
P +P V+ G D+ S L R+RII +G ++ VA +QL+ L + D + +I
Sbjct: 2 PTIPIVIETTGRSERAYDIYSRLLRDRIILLGSAVDDHVANLICAQLLFLESEDPEKEIF 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
MY+N PGGS+ + LAIYD M ++ PKV T+C G AAS A++L G GMRYA+P++RIM
Sbjct: 62 MYINSPGGSVTAGLAIYDTMQYVLPKVSTLCMGQAASMGALLLCAGATGMRYALPHSRIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
++QP G G D+ E + R ++ HT D
Sbjct: 122 IHQPMGGFQGQATDIDIHAREILRIRESLNEIMVRHTGQD 161
>gi|295112117|emb|CBL28867.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synergistetes
bacterium SGP1]
Length = 195
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 90/143 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G + VA ++QL+ L + D D DI +Y+N PGGS+ + +AIY
Sbjct: 21 DIYSRLLKDRIVFLGTQVMDDVANSIVAQLLFLESEDPDKDIHLYINSPGGSVTAGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V T+C G+AAS AAI+L+GG +G R A+PNA +M++QP G+ G D++
Sbjct: 81 DTMQYIKSPVSTICVGMAASMAAILLSGGARGKRLALPNAEVMIHQPLGGTSGQASDIEI 140
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
+ +R + L HT D
Sbjct: 141 HARNILNTRKRMNAILARHTGQD 163
>gi|108757731|ref|YP_634562.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus
DK 1622]
gi|3023519|sp|O30612.1|CLPP2_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|2384690|gb|AAB97819.1| proteosome major subunit [Myxococcus xanthus DK 1622]
gi|108461611|gb|ABF86796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus
xanthus DK 1622]
Length = 203
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
DL S L ++RII +G P+N VA ++QL+ L + D D I +Y+N PGGS+ + LAIY
Sbjct: 18 DLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G AAS A++L G KG RYA+PN+RIM++QP G+ G D+
Sbjct: 78 DTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATDIDI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R ++ HT
Sbjct: 138 QAKEILRLRSYINGLIVKHT 157
>gi|411119403|ref|ZP_11391783.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Oscillatoriales cyanobacterium JSC-12]
gi|410711266|gb|EKQ68773.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Oscillatoriales cyanobacterium JSC-12]
Length = 229
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G PI+ VA ++QL+ L D + DI +
Sbjct: 27 VIPVVIEQAGRGERAFDIYSRLLRERIVFLGTPIDDAVADSVVAQLLFLEAEDPEKDIQL 86
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++ V T+CFG+AAS A +LA G G R ++P++R+M+
Sbjct: 87 YINSPGGSVTAGMAIYDTMQQVRCDVATICFGLAASMGAFLLASGTTGKRMSLPSSRVMI 146
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 147 HQPLGGAQGQAVDIEIQAKEILYHKRKLNELLSYHT 182
>gi|169831635|ref|YP_001717617.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Desulforudis audaxviator MP104C]
gi|169638479|gb|ACA59985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Desulforudis audaxviator MP104C]
Length = 198
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 84/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+FIG PI VA I+QL+ L D D DI +Y+N PGG + S +AIY
Sbjct: 20 DIYSRLLKDRIVFIGGPIEDHVANLIIAQLLFLEAEDPDKDIHLYINSPGGLVTSGMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+P V T+C G AAS A +LA G G R+A+P ARIM++QP G G ++
Sbjct: 80 DTMQYIRPDVSTICLGQAASFGAFLLAAGTPGKRFALPYARIMMHQPLGGVQGQATEIDI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + ++ V L HT
Sbjct: 140 HAREILRTKRVLNELLAKHT 159
>gi|406942781|gb|EKD74936.1| ATP-dependent Clp protease proteolytic subunit [uncultured
bacterium]
Length = 211
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ PI +A ++QL+ L + + D DI +Y+N PGG++ S LAIY
Sbjct: 28 DIYSRLLKERVIFLIGPIEDNMANLVVAQLLFLESENPDKDIHLYINSPGGAVTSALAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L GG KG RY +P++R+M++QP G G D++
Sbjct: 88 DTMQFIKPDVSTLCIGQAASAGALLLCGGAKGKRYCLPHSRMMIHQPLGGYQGQATDIEI 147
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E ++ R + + HT
Sbjct: 148 HTREMLLLREKLTTIIAYHT 167
>gi|428225971|ref|YP_007110068.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geitlerinema
sp. PCC 7407]
gi|427985872|gb|AFY67016.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geitlerinema
sp. PCC 7407]
Length = 200
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RIIF+GQP++S +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSKLLQERIIFLGQPVDSDLANLIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M+ +KP V T+C G+AAS A +LA G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGMGIFDTMNHVKPDVCTICLGLAASMGAFLLAAGAKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q E
Sbjct: 121 HQPLGGAQGQATDIEIQARE 140
>gi|409406436|ref|ZP_11254898.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum sp.
GW103]
gi|386434985|gb|EIJ47810.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum sp.
GW103]
Length = 208
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISL 76
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AI+D M +IKP+V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 77 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 137 HQPLGGAQGQASDIEIQAREILYLRE 162
>gi|427733872|ref|YP_007053416.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rivularia sp.
PCC 7116]
gi|427368913|gb|AFY52869.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rivularia sp.
PCC 7116]
Length = 201
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R+RIIF+GQPI+S VA ++Q++ L D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRDRIIFLGQPIDSNVANLIVAQMLLLDAEDAEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P + T+C G+AAS A +L G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMRHIRPDICTICTGLAASMGAFLLTAGTKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L +T
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKQQLNQYLAENT 156
>gi|159465361|ref|XP_001690891.1| active subunit of the chloroplast ClpP complex [Chlamydomonas
reinhardtii]
gi|158279577|gb|EDP05337.1| active subunit of the chloroplast ClpP complex [Chlamydomonas
reinhardtii]
Length = 256
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 76 ISGKNDNPPLMPAVMTPGGPLDLS------SVLFRNRIIFIGQPINSMVAQRAISQLVTL 129
+S +N +PP++ P PL + S LF+ RI+ +G ++ +A ++QL+ L
Sbjct: 43 VSSRNPHPPVVCQGPPPPNPLVIERFQGVVSQLFQQRIVRLGGAVDDDMANLLVAQLLYL 102
Query: 130 ATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGM 189
++D DI MY+N PGGS+ + +A++D M I+P V T C G+AAS A ILA G+ G
Sbjct: 103 DSVDNKRDITMYVNSPGGSVTAGMAVFDTMRHIRPDVSTCCIGLAASMGAFILASGQAGK 162
Query: 190 RYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
RY++PN+RIM++QP G+ G D++ Q NE
Sbjct: 163 RYSLPNSRIMIHQPLGGAQGQATDIEIQANE 193
>gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum
seropedicae SmR1]
gi|124483356|emb|CAM32551.1| ATP-dependent Clp protease (proteolytic subunit) protein
[Herbaspirillum seropedicae]
gi|300074680|gb|ADJ64079.1| ATP-dependent Clp protease (proteolytic subunit) protein
[Herbaspirillum seropedicae SmR1]
Length = 208
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISL 76
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AI+D M +IKP+V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 77 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 137 HQPLGGAQGQASDIEIQAREILYLRE 162
>gi|405363134|ref|ZP_11026132.1| ATP-dependent Clp protease proteolytic subunit [Chondromyces
apiculatus DSM 436]
gi|397090077|gb|EJJ20963.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 203
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
DL S L ++RII +G P+N VA ++QL+ L + D D I +Y+N PGGS+ + LAIY
Sbjct: 18 DLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G AAS A++L G KG RYA+PN+RIM++QP G+ G D+
Sbjct: 78 DTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATDIDI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R ++ HT
Sbjct: 138 QAKEILRLRSYINGLIVKHT 157
>gi|403235930|ref|ZP_10914516.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
10403023]
Length = 197
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPNVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|336401433|ref|ZP_08582202.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
21_1A]
gi|336161020|gb|EGN64036.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
21_1A]
Length = 193
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 87 PAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L D + DI+MY+
Sbjct: 4 PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ +AIYD M++IKP V TVC G AAS A +LA G KG R+A+ N+RIM++Q
Sbjct: 64 NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123
Query: 203 P--QSGSGGHVEDVKRQVNE 220
P G G D+ NE
Sbjct: 124 PLISGGLKGQATDISIHANE 143
>gi|257784419|ref|YP_003179636.1| endopeptidase Clp [Atopobium parvulum DSM 20469]
gi|257472926|gb|ACV51045.1| Endopeptidase Clp [Atopobium parvulum DSM 20469]
Length = 202
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 82 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N P +P V+ TP G D+ S L +RI+F+G+P+ A I+QL+ L + D D D
Sbjct: 6 NIPTIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEPVTRDSANLVIAQLLHLESQDPDKD 65
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y++ PGG +Y+ L I D M++IKP V T+C G+AAS +A++LA G KG R A+PN+
Sbjct: 66 ISLYIDSPGGDVYAGLGILDTMNFIKPDVSTICVGMAASMSAVLLAAGAKGKRLALPNSM 125
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEA-VISRHVS 228
+M++QP SG G D++ +E I H++
Sbjct: 126 VMIHQPSSGVQGQQTDIQIVADETKWIREHIN 157
>gi|52082006|ref|YP_080797.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319647870|ref|ZP_08002088.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus sp.
BT1B_CT2]
gi|404490886|ref|YP_006714992.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423684010|ref|ZP_17658849.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
licheniformis WX-02]
gi|67460468|sp|Q65EI5.1|CLPP1_BACLD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|52005217|gb|AAU25159.1| ATP-dependent Clp protease proteolytic subunit (class III
heat-shock protein) [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52349895|gb|AAU42529.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317390211|gb|EFV71020.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus sp.
BT1B_CT2]
gi|383440784|gb|EID48559.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
licheniformis WX-02]
Length = 198
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|255002920|ref|ZP_05277884.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. Puerto Rico]
gi|255004048|ref|ZP_05278849.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. Virginia]
Length = 198
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 89/145 (61%), Gaps = 11/145 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFI + +A ++QLV L + + DI +Y+N PGG + + L+IY
Sbjct: 19 DIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISLYINSPGGVVTAGLSIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVED--- 213
D M +IKPKV T+C G AAS A++LAGGE GMRYA+PN+RIM++QP G G D
Sbjct: 79 DTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMVHQPSGGFRGQATDIEI 138
Query: 214 -------VKRQVNEAVISRHVSLSF 231
+KR++NE + +H S
Sbjct: 139 HAREILEIKRRLNEIYV-KHTGKSL 162
>gi|421527266|ref|ZP_15973870.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum ChDC F128]
gi|402256700|gb|EJU07178.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum ChDC F128]
Length = 193
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 87 PAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L D + DI+MY+
Sbjct: 4 PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ +AIYD M++IKP V TVC G AAS A +LA G KG R+A+ N+RIM++Q
Sbjct: 64 NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123
Query: 203 P--QSGSGGHVEDVKRQVNE 220
P G G D+ NE
Sbjct: 124 PLISGGLKGQATDISIHANE 143
>gi|347530949|ref|YP_004837712.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
hominis A2-183]
gi|345501097|gb|AEN95780.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Roseburia
hominis A2-183]
Length = 201
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N A ++QL+ L + D + DI +Y+N PGG + + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPNKDIQLYINSPGGMVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G+AAS A +LAGG KG RYA+PNA +M++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTICIGLAASMGAFLLAGGTKGKRYALPNAEVMIHQPSGGAKGQATEIQ 137
>gi|336420043|ref|ZP_08600289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 11_3_2]
gi|336162184|gb|EGN65166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 11_3_2]
Length = 193
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 87 PAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L D + DI+MY+
Sbjct: 4 PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ +AIYD M++IKP V TVC G AAS A +LA G KG R+A+ N+RIM++Q
Sbjct: 64 NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123
Query: 203 P--QSGSGGHVEDVKRQVNE 220
P G G D+ NE
Sbjct: 124 PLISGGLKGQATDISIHANE 143
>gi|326509601|dbj|BAJ87016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 296
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Query: 91 TPGGPL--DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGS 148
PGG D+ +L R RIIF+G I +A +SQL+ L +D ++DI +++N PGGS
Sbjct: 75 APGGVASGDVMGLLLRERIIFLGNEIEDFLADAVVSQLLLLDAMDSESDIRLFVNSPGGS 134
Query: 149 IYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG 208
+ + +AIYD M ++ V T+ G+A S A+I+L GG KG R+AMPN RIM++QP G+
Sbjct: 135 LSATMAIYDVMQLVRADVSTIGMGIAGSTASILLGGGAKGKRFAMPNTRIMMHQPVGGAS 194
Query: 209 GHVEDVKRQVNEAVISRH 226
G DV+ Q E + S+
Sbjct: 195 GQALDVEVQAKEILASKR 212
>gi|237743260|ref|ZP_04573741.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
7_1]
gi|260495117|ref|ZP_05815246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 3_1_33]
gi|422939797|ref|ZP_16967169.1| ATP-dependent Clp protease, protease subunit [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
gi|229433039|gb|EEO43251.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
7_1]
gi|260197560|gb|EEW95078.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 3_1_33]
gi|339890648|gb|EGQ79742.1| ATP-dependent Clp protease, protease subunit [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
Length = 193
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 87 PAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L D + DI+MY+
Sbjct: 4 PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ +AIYD M++IKP V TVC G AAS A +LA G KG R+A+ N+RIM++Q
Sbjct: 64 NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123
Query: 203 P--QSGSGGHVEDVKRQVNE 220
P G G D+ NE
Sbjct: 124 PLISGGLKGQATDISIHANE 143
>gi|34762747|ref|ZP_00143736.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|256846930|ref|ZP_05552384.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 3_1_36A2]
gi|294784271|ref|ZP_06749566.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 3_1_27]
gi|421144657|ref|ZP_15604566.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
gi|27887597|gb|EAA24677.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|256717728|gb|EEU31287.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 3_1_36A2]
gi|294488137|gb|EFG35488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 3_1_27]
gi|395488964|gb|EJG09810.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
Length = 193
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 87 PAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L D + DI+MY+
Sbjct: 4 PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ +AIYD M++IKP V TVC G AAS A +LA G KG R+A+ N+RIM++Q
Sbjct: 64 NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123
Query: 203 P--QSGSGGHVEDVKRQVNE 220
P G G D+ NE
Sbjct: 124 PLISGGLKGQATDISIHANE 143
>gi|294508705|ref|YP_003572764.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
M8]
gi|294345034|emb|CBH25812.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
M8]
Length = 273
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 86/143 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+FIG PIN +A ++QL+ LA+ + I +Y+N PGG IYS L +Y
Sbjct: 77 DIFSRLLKERIVFIGTPINDQIANLTVAQLLYLASESSEKPINLYINSPGGVIYSGLGVY 136
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I V T+C G+AAS +++LA GE R +PN+R+M++QP G+ G D++
Sbjct: 137 DTMQYIGAPVSTICVGLAASMGSVLLAAGEDDSRACLPNSRVMIHQPMGGAEGQASDIEI 196
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + + L LHT D
Sbjct: 197 QAEEIMWLKERLYEILALHTGQD 219
>gi|186475776|ref|YP_001857246.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
phymatum STM815]
gi|390571699|ref|ZP_10251936.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia terrae
BS001]
gi|420250357|ref|ZP_14753576.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. BT03]
gi|184192235|gb|ACC70200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phymatum STM815]
gi|389936313|gb|EIM98204.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia terrae
BS001]
gi|398061216|gb|EJL53014.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. BT03]
Length = 219
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A I+QL+ L + + D DI
Sbjct: 28 LVPIVVETSGRGERSYDIYSRLLKERVVFLVGEVNDQTANLVIAQLLFLESENPDKDISF 87
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PNAR+M+
Sbjct: 88 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNARVMI 147
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 148 HQPLGGARGQASDIEIQAREILYLKERLNQLLSHHT 183
>gi|54309798|ref|YP_130818.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
profundum SS9]
gi|46914236|emb|CAG21016.1| putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease,
proteolytic subunit [Vibrio vulnificus CMCP6]
[Photobacterium profundum SS9]
Length = 207
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 32 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 91
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V TVC G A S A +LAGG KG RY +PN+R+M++QP G G D++
Sbjct: 92 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQI 151
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + +H S L HT
Sbjct: 152 HAKEILTIKHRLNSLLAKHT 171
>gi|390941424|ref|YP_006405161.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Sulfurospirillum barnesii SES-3]
gi|390194531|gb|AFL69586.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Sulfurospirillum barnesii SES-3]
Length = 196
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L ++RII + IN VA ++QL+ L D + DI +Y
Sbjct: 5 VPVVIEKTGRGERSYDIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPEKDIYLY 64
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG I S +IYD M++IKP + T+C G AAS A +L+ G KG RYA+PNARIM++
Sbjct: 65 INSPGGVITSGFSIYDTMNYIKPDISTICIGQAASMGAFLLSSGTKGKRYALPNARIMIH 124
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHV 227
QP G+ G D++ Q E + + V
Sbjct: 125 QPLGGAQGQATDIEIQAKEILRMKQV 150
>gi|168018159|ref|XP_001761614.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687298|gb|EDQ73682.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 303
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 87/135 (64%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
LF+ RII G ++ +A ++QL+ L D D DI+MY+N PGGS+ + +AI+D M
Sbjct: 113 LFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPDRDIVMYVNSPGGSVTAGMAIFDTMRH 172
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q NE
Sbjct: 173 IRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQQTDIEIQANEI 232
Query: 222 VISRHVSLSFLLLHT 236
+ + +L HT
Sbjct: 233 LHHKANLNGYLAYHT 247
>gi|19705312|ref|NP_602807.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|237742958|ref|ZP_04573439.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
4_1_13]
gi|254302272|ref|ZP_04969630.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|289766533|ref|ZP_06525911.1| endopeptidase Clp [Fusobacterium sp. D11]
gi|296328560|ref|ZP_06871079.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|423137615|ref|ZP_17125258.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. animalis F0419]
gi|22653693|sp|Q8RHJ8.1|CLPP_FUSNN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|19713281|gb|AAL94106.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|148322464|gb|EDK87714.1| S14 family endopeptidase ClpP [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|229430606|gb|EEO40818.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
4_1_13]
gi|289718088|gb|EFD82100.1| endopeptidase Clp [Fusobacterium sp. D11]
gi|296154369|gb|EFG95168.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|371959667|gb|EHO77345.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
nucleatum subsp. animalis F0419]
Length = 193
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 87 PAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L D + DI+MY+
Sbjct: 4 PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYI 63
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ +AIYD M++IKP V TVC G AAS A +LA G KG R+A+ N+RIM++Q
Sbjct: 64 NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKGKRFALENSRIMIHQ 123
Query: 203 P--QSGSGGHVEDVKRQVNE 220
P G G D+ NE
Sbjct: 124 PLISGGLKGQATDISIHANE 143
>gi|399050842|ref|ZP_10740886.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
gi|433542108|ref|ZP_20498542.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
gi|398051558|gb|EJL43880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. CF112]
gi|432186623|gb|ELK44090.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus agri
BAB-2500]
Length = 193
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 18 DIYSRLLKDRIILLGTEIDDEVANLVVAQLLFLQAEDPEKDISLYINSPGGSVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G G ED+
Sbjct: 78 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGVRGQAEDIRI 137
Query: 215 --------KRQVNEAVISR 225
KRQ+N+ + R
Sbjct: 138 HAEWILKTKRQLNQILSER 156
>gi|254480762|ref|ZP_05094009.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2148]
gi|214039345|gb|EEB80005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2148]
Length = 213
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 4/160 (2%)
Query: 81 DNPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDA 136
DN L+P V+ T G D+ S L + R+IF+ + +A ++QL+ L + + D
Sbjct: 14 DNLGLVPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVEDHMANLIVAQLLFLESENPDK 73
Query: 137 DILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA 196
DI +Y+N PGGS+ + L+IYD M +IKP V T+C G AAS A +L GG KG RY +PNA
Sbjct: 74 DIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCLGQAASMGAFLLCGGAKGKRYCLPNA 133
Query: 197 RIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
R M++QP G+ G D++ Q E +I R + HT
Sbjct: 134 RTMIHQPSGGAQGQATDIEIQAKEILIIREKLNQLMAEHT 173
>gi|58616924|ref|YP_196123.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
ruminantium str. Gardel]
gi|67460150|sp|Q5FFG7.1|CLPP_EHRRG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|58416536|emb|CAI27649.1| ATP-dependent CLP protease proteolytic subunit [Ehrlichia
ruminantium str. Gardel]
Length = 198
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ P D+ + L + RIIFI PI +A ++QL+ L + + DI M
Sbjct: 3 LVPMVVEPTSRGERAYDIYTRLLKERIIFITGPIEDQMASLVVAQLIFLEAENPEKDISM 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + L+IYD M ++KP++ T+C G AAS +++LA GEKGMR A+PN+RIM+
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYVKPRIATLCLGQAASMGSLLLAAGEKGMRCALPNSRIMI 122
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D++ E
Sbjct: 123 HQPSGGFQGQATDIEIHAKE 142
>gi|329908483|ref|ZP_08274873.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
bacterium IMCC9480]
gi|327546710|gb|EGF31661.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
bacterium IMCC9480]
Length = 206
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 92/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + R+IF+ P+N VA ++QL+ L + + D DI +
Sbjct: 15 MIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDGVANLIVAQLLFLESENPDKDISL 74
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AI+D M +IKP V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 75 YINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 134
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 135 HQPSGGAQGQATDIEIQAKEILYLRE 160
>gi|218248285|ref|YP_002373656.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8801]
gi|257060388|ref|YP_003138276.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8802]
gi|218168763|gb|ACK67500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8801]
gi|256590554|gb|ACV01441.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 8802]
Length = 201
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + A ++QL+ L D D DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENANLIVAQLLFLEAEDPDKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNQHLASHT 156
>gi|134295958|ref|YP_001119693.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
vietnamiensis G4]
gi|387902477|ref|YP_006332816.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
KJ006]
gi|166201808|sp|A4JF05.1|CLPP_BURVG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|134139115|gb|ABO54858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
vietnamiensis G4]
gi|387577369|gb|AFJ86085.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
KJ006]
Length = 217
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + + L HT D
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQD 184
>gi|60389653|sp|Q6LNW0.2|CLPP_PHOPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 199
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 24 DIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGMSIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V TVC G A S A +LAGG KG RY +PN+R+M++QP G G D++
Sbjct: 84 DTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMIHQPLGGFQGQASDIQI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + +H S L HT
Sbjct: 144 HAKEILTIKHRLNSLLAKHT 163
>gi|107028898|ref|YP_625993.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia AU 1054]
gi|115351962|ref|YP_773801.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
ambifaria AMMD]
gi|116689944|ref|YP_835567.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia HI2424]
gi|170702050|ref|ZP_02892966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria IOP40-10]
gi|170733282|ref|YP_001765229.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia MC0-3]
gi|171320790|ref|ZP_02909797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria MEX-5]
gi|172060888|ref|YP_001808540.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
ambifaria MC40-6]
gi|206560359|ref|YP_002231123.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia J2315]
gi|402566278|ref|YP_006615623.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cepacia GG4]
gi|421866865|ref|ZP_16298527.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia H111]
gi|116243129|sp|Q1BH85.1|CLPP_BURCA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|122322952|sp|Q0BEF6.1|CLPP_BURCM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201802|sp|A0K847.1|CLPP_BURCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|105898062|gb|ABF81020.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
cenocepacia AU 1054]
gi|115281950|gb|ABI87467.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
ambifaria AMMD]
gi|116648033|gb|ABK08674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
cenocepacia HI2424]
gi|169816524|gb|ACA91107.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
cenocepacia MC0-3]
gi|170133036|gb|EDT01448.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria IOP40-10]
gi|171093960|gb|EDT39074.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria MEX-5]
gi|171993405|gb|ACB64324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria MC40-6]
gi|198036400|emb|CAR52296.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia J2315]
gi|358073029|emb|CCE49405.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia H111]
gi|402247475|gb|AFQ47929.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cepacia GG4]
Length = 217
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + + L HT D
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQD 184
>gi|83815964|ref|YP_446772.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
DSM 13855]
gi|83757358|gb|ABC45471.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
DSM 13855]
Length = 272
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 86/143 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+FIG PIN +A ++QL+ LA+ + I +Y+N PGG IYS L +Y
Sbjct: 76 DIFSRLLKERIVFIGTPINDQIANLTVAQLLYLASESSEKPINLYINSPGGVIYSGLGVY 135
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I V T+C G+AAS +++LA GE R +PN+R+M++QP G+ G D++
Sbjct: 136 DTMQYIGAPVSTICVGLAASMGSVLLAAGEDDSRACLPNSRVMIHQPMGGAEGQASDIEI 195
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + + L LHT D
Sbjct: 196 QAEEIMWLKERLYEILALHTGQD 218
>gi|42527179|ref|NP_972277.1| ATP-dependent Clp protease proteolytic subunit [Treponema denticola
ATCC 35405]
gi|449111762|ref|ZP_21748331.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola ATCC 33521]
gi|449113431|ref|ZP_21749936.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola ATCC 35404]
gi|449128747|ref|ZP_21764993.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola SP33]
gi|67460504|sp|Q73M38.1|CLPP1_TREDE RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|41817603|gb|AAS12188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
denticola ATCC 35405]
gi|448941155|gb|EMB22059.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola SP33]
gi|448957033|gb|EMB37786.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola ATCC 33521]
gi|448959641|gb|EMB40360.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola ATCC 35404]
Length = 197
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+ IN M A ++QL+ L + D DI +
Sbjct: 4 LVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEINDMSADLVVAQLLFLEAQNPDKDISL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M I+P V T+C G AS A++LAGG K RYA+P++R+M+
Sbjct: 64 YINSPGGSVTAGLAIYDTMQHIRPDVQTICLGQCASMGAVLLAGGAKNKRYALPSSRVMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ Q E V + +++ + +T
Sbjct: 124 HQPWGGVQGQAVDINIQAKEIVRLKKLTIKYFAENT 159
>gi|402773762|ref|YP_006593299.1| ATP-dependent Clp protease proteolytic subunit [Methylocystis sp.
SC2]
gi|401775782|emb|CCJ08648.1| ATP-dependent Clp protease proteolytic subunit [Methylocystis sp.
SC2]
Length = 211
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 87/144 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+ PI +A I+QL+ L + + +I +Y+N PGG + S LAI
Sbjct: 27 FDIYSRLLRERIIFVTGPIEDHMASVIIAQLLFLESENPKKEISLYINSPGGVVTSGLAI 86
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD + +IKPKV T+C G AAS +++LA G G+RYA+PNAR+ML+QP G G D++
Sbjct: 87 YDTIQFIKPKVSTLCVGQAASMGSLLLAAGADGLRYALPNARVMLHQPSGGFQGQASDIQ 146
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
R + + + + HT D
Sbjct: 147 RHAEDILKVKKRLNDIYVRHTGKD 170
>gi|399888212|ref|ZP_10774089.1| ATP-dependent Clp protease proteolytic subunit [Clostridium arbusti
SL206]
Length = 194
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 79/118 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEDVNDTTASLIVAQLLFLESEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDI 136
>gi|171463607|ref|YP_001797720.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. necessarius STIR1]
gi|171193145|gb|ACB44106.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. necessarius STIR1]
Length = 209
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R R+IF+ +N A I+QL+ L + + D +I +
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVIFLVGEVNDQTANLVIAQLLFLESENPDKEISL 77
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG++ + LAIYD M +IKP V T+C G+AAS A +L GE G RYA+PN+R+M+
Sbjct: 78 YINSPGGAVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLCAGENGKRYALPNSRVMI 137
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 138 HQPLGGARGQASDIEIQAREILYLRE 163
>gi|157273309|gb|ABV27208.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Chloracidobacterium thermophilum]
Length = 199
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++ IIFI PI+ VA ++QL+ L + D + DI +
Sbjct: 8 LIPMVIEQTGRGERAYDIYSRLLKDNIIFISTPIDDTVASLVVAQLLFLESEDPERDISI 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP + T C G AS A++LA G KG RYA+P++RI++
Sbjct: 68 YINSPGGSVTAGMAIYDTMQFVKPDIVTFCVGQCASMGALLLAAGTKGKRYALPHSRILI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D+ Q E R ++ + L HT
Sbjct: 128 HQPSGGAQGQATDILIQAEEIKRIRELTSTILAKHT 163
>gi|294054261|ref|YP_003547919.1| endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
gi|293613594|gb|ADE53749.1| Endopeptidase Clp [Coraliomargarita akajimensis DSM 45221]
Length = 197
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R+RIIFIG PIN VA I+Q++ L D DI +Y+N PGGS+ +AIY
Sbjct: 21 DIYSRLLRDRIIFIGTPINDFVANAVIAQMLFLQMEDPKKDISLYINSPGGSVTDGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++++ V T C G AAS A ++LA G G RYA+PN+R+M++QP G+ G D+
Sbjct: 81 DTMNFLQCDVVTYCVGQAASMATLLLAAGTPGKRYALPNSRVMMHQPTGGATGQTSDISI 140
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R S + HT
Sbjct: 141 AAKEILRWRERMNSLIASHT 160
>gi|444363684|ref|ZP_21164096.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia cenocepacia BC7]
gi|444369902|ref|ZP_21169607.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia cenocepacia K56-2Valvano]
gi|443594526|gb|ELT63169.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia cenocepacia BC7]
gi|443598384|gb|ELT66748.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia cenocepacia K56-2Valvano]
Length = 208
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 17 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 76
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 77 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 136
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + + L HT D
Sbjct: 137 HQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQD 175
>gi|428216584|ref|YP_007101049.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
sp. PCC 7367]
gi|427988366|gb|AFY68621.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
sp. PCC 7367]
Length = 197
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ ++ V+ ++Q++ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIFSRLLRERIVFLGQQVDDTVSNLIVAQMLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M I+P V T+C G+AAS A +LAGG G R ++P+ RIM+
Sbjct: 61 YVNSPGGSVTAGMAIYDTMQHIQPDVSTICVGLAASMGAFLLAGGAAGKRLSLPHTRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQAADIEIQAKEILYHKQRLNELLASHT 156
>gi|257456332|ref|ZP_05621529.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
vincentii ATCC 35580]
gi|257446418|gb|EEV21464.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
vincentii ATCC 35580]
Length = 201
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+ I A ++QL+ L + + D DI +
Sbjct: 8 LVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEITDATADLVVAQLLFLESQNPDKDISL 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LA+YD M I P V T+C G AAS AA++LAGG KG R+A+P++R+M+
Sbjct: 68 YINSPGGSVTAGLAVYDTMQHIHPNVQTICLGQAASMAAVLLAGGSKGKRFALPSSRVMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D+ Q E + + + + + HT
Sbjct: 128 HQPWGGAQGQASDITIQAREILRLKKLIIQYCAHHT 163
>gi|344203234|ref|YP_004788377.1| ATP-dependent Clp protease proteolytic subunit [Muricauda
ruestringensis DSM 13258]
gi|343955156|gb|AEM70955.1| ATP-dependent Clp protease proteolytic subunit [Muricauda
ruestringensis DSM 13258]
Length = 225
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 89/145 (61%), Gaps = 9/145 (6%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G IN VA +QL+ L + D DI +Y+N PGGS+Y+ L I
Sbjct: 49 MDVFSRLMMDRIIFMGTGINDQVANIVQAQLLFLESADASKDIQIYINSPGGSVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS AA++L G +G R +P++R+M++QP SG+ G D++
Sbjct: 109 YDTMQFIKPDVATICTGIAASMAAVLLCAGHEGKRSGLPHSRVMIHQPLSGAQGQASDIE 168
Query: 216 RQVNEA---------VISRHVSLSF 231
E +IS+H SF
Sbjct: 169 IAAQEVLKIKNELYEIISKHSGQSF 193
>gi|422342162|ref|ZP_16423102.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola F0402]
gi|449102500|ref|ZP_21739248.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola AL-2]
gi|449107517|ref|ZP_21744171.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola ASLM]
gi|449109262|ref|ZP_21745898.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola ATCC 33520]
gi|449116002|ref|ZP_21752462.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola H-22]
gi|449119947|ref|ZP_21756334.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola H1-T]
gi|449122344|ref|ZP_21758684.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola MYR-T]
gi|449123736|ref|ZP_21760058.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola OTK]
gi|449131403|ref|ZP_21767619.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola SP37]
gi|451969209|ref|ZP_21922438.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola US-Trep]
gi|325474230|gb|EGC77418.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola F0402]
gi|448940236|gb|EMB21147.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola SP37]
gi|448943989|gb|EMB24871.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola OTK]
gi|448948100|gb|EMB28938.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola MYR-T]
gi|448948567|gb|EMB29401.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola H1-T]
gi|448955488|gb|EMB36255.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola H-22]
gi|448959070|gb|EMB39792.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola ATCC 33520]
gi|448961717|gb|EMB42412.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola ASLM]
gi|448966089|gb|EMB46747.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola AL-2]
gi|451702077|gb|EMD56511.1| ATP-dependent Clp protease proteolytic subunit 1 [Treponema
denticola US-Trep]
Length = 197
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+ IN M A ++QL+ L + D DI +
Sbjct: 4 LVPYVIEQTGNGERSYDIFSRLLKDRIIFVDGEINDMSADLVVAQLLFLEAQNPDKDISL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M I+P V T+C G AS A++LAGG K RYA+P++R+M+
Sbjct: 64 YINSPGGSVTAGLAIYDTMQHIRPDVQTICLGQCASMGAVLLAGGAKNKRYALPSSRVMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ Q E V + +++ + +T
Sbjct: 124 HQPWGGVQGQAVDINIQAKEIVRLKKLTIKYFAENT 159
>gi|347542087|ref|YP_004856723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Arthromitus sp. SFB-rat-Yit]
gi|346985122|dbj|BAK80797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Arthromitus sp. SFB-rat-Yit]
Length = 195
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 79/118 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G +N + A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKERIIFLGDEVNDVTASLIVAQLLFLESEDTDKDIHLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKP V T+C G+AAS A +L+ G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNSEIMIHQPLGGFRGQATDI 136
>gi|170692395|ref|ZP_02883558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
graminis C4D1M]
gi|307729638|ref|YP_003906862.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1003]
gi|323526047|ref|YP_004228200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1001]
gi|170142825|gb|EDT10990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
graminis C4D1M]
gi|307584173|gb|ADN57571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1003]
gi|323383049|gb|ADX55140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1001]
Length = 217
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 5/155 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++Q++ L + + D DI
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDIYF 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
+QP G+ G D++ Q E + + L+ LL H
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKE-RLNHLLAH 179
>gi|225551910|ref|ZP_03772850.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp.
SV1]
gi|225370908|gb|EEH00338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia sp.
SV1]
Length = 194
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D + DI +
Sbjct: 4 LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LAGG KG R ++ +RIM+
Sbjct: 64 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 124 HQPWGGISGQASDINIQANE 143
>gi|78043074|ref|YP_359188.1| ATP-dependent Clp protease proteolytic subunit [Carboxydothermus
hydrogenoformans Z-2901]
gi|90101405|sp|Q3AF96.1|CLPP_CARHZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|77995189|gb|ABB14088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Carboxydothermus hydrogenoformans Z-2901]
Length = 195
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 84/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++R IFIG PI+ VA I+Q++ L D + DI +Y+N PGG I + +AIY
Sbjct: 20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A +LA G KG R+++P ARIM++QP G G D+
Sbjct: 80 DTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R + L HT
Sbjct: 140 HAREILRMRDMLNELLTKHT 159
>gi|383790357|ref|YP_005474931.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Spirochaeta
africana DSM 8902]
gi|383106891|gb|AFG37224.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Spirochaeta
africana DSM 8902]
Length = 205
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 96/159 (60%), Gaps = 4/159 (2%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L ++RI+F+ I+ + A ++QL+ L + D D D
Sbjct: 5 NNTLVPMVVEQTGVGERSYDIYSRLLKDRIVFLDGEIHDVTADLVVAQLLFLESQDPDKD 64
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGGS+ + LAIYD + +IKP V T+C G AAS A++LA G G R+A+P++R
Sbjct: 65 ISLYINSPGGSVTAGLAIYDTIQYIKPDVQTICMGQAASMGAVLLAAGTAGKRFALPSSR 124
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++++QP G+ G D+ Q E + + + + + HT
Sbjct: 125 VLMHQPWGGARGQASDIGIQAREIIRLKRLLIDYFANHT 163
>gi|323139086|ref|ZP_08074144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
sp. ATCC 49242]
gi|322395650|gb|EFX98193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
sp. ATCC 49242]
Length = 210
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 86/144 (59%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+ PI +A I+QL+ L + + +I +Y+N PGG + S LAI
Sbjct: 27 FDIYSRLLRERIIFVTGPIEDHMASVIIAQLLFLESENPKKEISLYINSPGGVVTSGLAI 86
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKPKV T+C G AAS +++L G G+RYA+PNAR+ML+QP G G D++
Sbjct: 87 YDTMQFIKPKVSTLCVGQAASMGSLLLCAGADGLRYALPNARVMLHQPSGGFQGQASDIQ 146
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
R + + + + HT D
Sbjct: 147 RHAEDILKVKKRLNDIYVRHTGKD 170
>gi|310778378|ref|YP_003966711.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ilyobacter
polytropus DSM 2926]
gi|309747701|gb|ADO82363.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ilyobacter
polytropus DSM 2926]
Length = 199
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 88/147 (59%)
Query: 82 NPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
NP ++ D+ S L R+RIIF+G I+ VA ++QL+ L D + DI+MY
Sbjct: 3 NPTVIENTGRGERAYDIYSRLLRDRIIFLGTEIDDRVANSIVAQLLFLEAEDAEKDIIMY 62
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG I +AIYD M++IKP V TVC G AAS A++L G G RY++ N+RIM++
Sbjct: 63 INSPGGVITGGMAIYDTMNYIKPDVQTVCIGQAASMGALLLTAGTPGKRYSLENSRIMIH 122
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVS 228
QP G+ G D+ Q E + + ++
Sbjct: 123 QPLGGARGQATDIAIQAKEILKMKELT 149
>gi|291295952|ref|YP_003507350.1| endopeptidase Clp [Meiothermus ruber DSM 1279]
gi|290470911|gb|ADD28330.1| Endopeptidase Clp [Meiothermus ruber DSM 1279]
Length = 195
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI++ VA ++Q++ LA + + +I MY+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAQVANTVVAQILFLAAQNPNQEIRMYINSPGGDVDAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS-GSGGHVEDVK 215
D M ++ V T+C G+AAS A++LA GE G RYA+P++++M++QP + G GG D+
Sbjct: 78 DTMQFVTAPVSTICVGLAASMGAVLLAAGEPGKRYALPHSKVMIHQPWARGLGGQATDIA 137
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q + + +R V + L HT
Sbjct: 138 IQAEQILKTRKVLNTILARHT 158
>gi|428770773|ref|YP_007162563.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
aponinum PCC 10605]
gi|428685052|gb|AFZ54519.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
aponinum PCC 10605]
Length = 196
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ + +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIETSGRGDRAFDIYSRLLRERIIFLGQQVTDELANSLVAQLLLLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ IKP V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIKPDVCTICVGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + ++ HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKQLNHYMASHT 156
>gi|407713410|ref|YP_006833975.1| ATP-dependent Clp protease, protease subunit [Burkholderia
phenoliruptrix BR3459a]
gi|407235594|gb|AFT85793.1| ATP-dependent Clp protease, protease subunit [Burkholderia
phenoliruptrix BR3459a]
Length = 211
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 5/155 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++Q++ L + + D DI
Sbjct: 20 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDIYF 79
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 80 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 139
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
+QP G+ G D++ Q E + + L+ LL H
Sbjct: 140 HQPLGGARGQASDIEIQAREILYLKE-RLNHLLAH 173
>gi|428306359|ref|YP_007143184.1| ATP-dependent Clp protease proteolytic subunit ClpP [Crinalium
epipsammum PCC 9333]
gi|428247894|gb|AFZ13674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Crinalium
epipsammum PCC 9333]
Length = 202
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIIFLGQQVDADLANLIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M+ I+P + T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVSAGMGIFDTMNQIRPDISTICVGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + FL HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEFLAQHT 156
>gi|88808603|ref|ZP_01124113.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 7805]
gi|88787591|gb|EAR18748.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 7805]
Length = 196
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSESANRIVAQLLFLEAEDPEKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|262277075|ref|ZP_06054868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
proteobacterium HIMB114]
gi|262224178|gb|EEY74637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
proteobacterium HIMB114]
Length = 204
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 96/156 (61%), Gaps = 15/156 (9%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L + RIIF+ PINS ++ +QL+ L + + +I +
Sbjct: 12 LVPMVIEQTPRGERSFDIYSRLLKERIIFLTGPINSYISSLVSAQLLFLESENNSKEIYL 71
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + LAIYD M +IKP V T+C G AAS + +LA GEKG+R ++PNARIM+
Sbjct: 72 YINSPGGVVTDGLAIYDTMQFIKPTVSTLCIGQAASMGSFLLAAGEKGLRMSLPNARIMV 131
Query: 201 NQPQSGSGGHVEDV----------KRQVNEAVISRH 226
+QP +G G D+ K+++NE + S+H
Sbjct: 132 HQPSAGFQGQATDIEIHTKEILSTKKRLNE-IYSKH 166
>gi|148239550|ref|YP_001224937.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 7803]
gi|147848089|emb|CAK23640.1| Protease subunit of ATP-dependent Clp protease [Synechococcus sp.
WH 7803]
Length = 196
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSESANRIVAQLLFLEAEDPEKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGAKGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|124013820|sp|Q2RZ59.2|CLPP2_SALRD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
Length = 233
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 86/143 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+FIG PIN +A ++QL+ LA+ + I +Y+N PGG IYS L +Y
Sbjct: 37 DIFSRLLKERIVFIGTPINDQIANLTVAQLLYLASESSEKPINLYINSPGGVIYSGLGVY 96
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I V T+C G+AAS +++LA GE R +PN+R+M++QP G+ G D++
Sbjct: 97 DTMQYIGAPVSTICVGLAASMGSVLLAAGEDDSRACLPNSRVMIHQPMGGAEGQASDIEI 156
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + + L LHT D
Sbjct: 157 QAEEIMWLKERLYEILALHTGQD 179
>gi|221218018|ref|ZP_03589484.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 72a]
gi|221191966|gb|EEE18187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 72a]
Length = 194
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D DI +
Sbjct: 4 LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDSKADTVIAQLLFLESEDSSKDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LAGG KG R ++ +RIM+
Sbjct: 64 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 124 HQPWGGISGQASDINIQANE 143
>gi|363581894|ref|ZP_09314704.1| ATP-dependent Clp protease proteolytic subunit 2 [Flavobacteriaceae
bacterium HQM9]
Length = 224
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 90/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G IN +A +QL+ L + D + DI +Y+N PGGS+Y+ L I
Sbjct: 49 MDVFSRLMMDRIIFLGTGINDQIANIVQAQLLFLESTDSNKDIQIYINSPGGSVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS A+++ G+KG R A+P++RIM++QP G+ G D++
Sbjct: 109 YDTMQFIKPDVATICTGMAASMGAVLMCAGQKGKRSALPHSRIMIHQPLGGAQGQASDIE 168
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E +I + + + H+
Sbjct: 169 ITAREILILKEELYNIIAKHS 189
>gi|326790230|ref|YP_004308051.1| ATP-dependent Clp protease proteolytic subunit ClpP [Clostridium
lentocellum DSM 5427]
gi|326540994|gb|ADZ82853.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
lentocellum DSM 5427]
Length = 193
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G +N++ A ++QL+ L D D DI+ Y+N PGGSI +AIY
Sbjct: 19 DIYSRLLKDRIIILGDEVNNVTANLIVAQLLFLEAEDPDKDIMFYINSPGGSITDGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G+AAS A +LAGG KG R+A+PNA +M++QP G+ G D++
Sbjct: 79 DTMQYIKCDVSTICMGMAASMGAFLLAGGTKGKRFALPNAEVMIHQPLGGAKGQATDIQ 137
>gi|203284513|ref|YP_002222253.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
Ly]
gi|203288047|ref|YP_002223062.1| ATP-dependent Clp protease proteolytic component [Borrelia
recurrentis A1]
gi|386859843|ref|YP_006272549.1| ATP-dependent Clp protease proteolytic subunit 1 [Borrelia
crocidurae str. Achema]
gi|201083956|gb|ACH93547.1| ATP-dependent Clp protease proteolytic component [Borrelia duttonii
Ly]
gi|201085267|gb|ACH94841.1| ATP-dependent Clp protease proteolytic component [Borrelia
recurrentis A1]
gi|384934724|gb|AFI31397.1| ATP-dependent Clp protease proteolytic subunit 1 [Borrelia
crocidurae str. Achema]
Length = 199
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R+RIIF+ IN + I+QL+ L + D DI +
Sbjct: 9 LVPTVVEHTGNYERVFDIYSRLLRDRIIFLSGEINDLRGDTVIAQLLFLESEDSKKDIYL 68
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI + LAIYD M +IKP V T+C G AAS AA +LAGG G R ++ +RIM+
Sbjct: 69 YINSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMAAFLLAGGAVGKRESLSYSRIMI 128
Query: 201 NQPQSGSGGHVEDVKRQVNEAV 222
+QP G GG D+ Q NE +
Sbjct: 129 HQPWGGIGGQASDISIQANEII 150
>gi|399018228|ref|ZP_10720412.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Herbaspirillum sp. CF444]
gi|398101864|gb|EJL92064.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Herbaspirillum sp. CF444]
Length = 208
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 91/146 (62%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RIIF+ P+N A ++QL+ L + + D DI +
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDATANLVVAQLLFLESENPDKDISL 76
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AI+D M +IKP V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 77 YINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 137 HQPLGGAQGQASDIEIQAREILYLRE 162
>gi|269959005|ref|YP_003328794.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma centrale
str. Israel]
gi|269848836|gb|ACZ49480.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma centrale
str. Israel]
Length = 215
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 89/145 (61%), Gaps = 11/145 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFI + +A ++QLV L + + DI +Y+N PGG + + L+IY
Sbjct: 36 DIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISLYINSPGGVVTAGLSIY 95
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVED--- 213
D M +IKPKV T+C G AAS A++LAGGE GMRYA+PN+RIM++QP G G D
Sbjct: 96 DTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMVHQPSGGFRGQATDIEI 155
Query: 214 -------VKRQVNEAVISRHVSLSF 231
+KR++NE + +H S
Sbjct: 156 HAREILEIKRRLNEIYV-KHTGKSL 179
>gi|145596011|ref|YP_001160308.1| endopeptidase Clp [Salinispora tropica CNB-440]
gi|145305348|gb|ABP55930.1| Endopeptidase Clp [Salinispora tropica CNB-440]
Length = 213
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 83/135 (61%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
L + RIIF+G + VA R +QL+ LA D D DI +++N PGGS+YS +AIYD M +
Sbjct: 33 LLKERIIFLGSEVTDQVANRICAQLLLLAAEDPDRDINLWINSPGGSVYSGMAIYDTMQF 92
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
I V TV G+AAS ++L G KG RYA+P+ARIM++QP G GG D+ Q +
Sbjct: 93 IDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGMGGTASDIAIQAEQM 152
Query: 222 VISRHVSLSFLLLHT 236
+ ++ + + HT
Sbjct: 153 LYTKRMFQERVAFHT 167
>gi|258542726|ref|YP_003188159.1| ATP-dependent Clp protease proteolytic subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|384042647|ref|YP_005481391.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-12]
gi|384051164|ref|YP_005478227.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-03]
gi|384054272|ref|YP_005487366.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-07]
gi|384057506|ref|YP_005490173.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-22]
gi|384060147|ref|YP_005499275.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-26]
gi|384063439|ref|YP_005484081.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-32]
gi|384119449|ref|YP_005502073.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256633804|dbj|BAH99779.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-01]
gi|256636863|dbj|BAI02832.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-03]
gi|256639916|dbj|BAI05878.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-07]
gi|256642972|dbj|BAI08927.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-22]
gi|256646027|dbj|BAI11975.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-26]
gi|256649080|dbj|BAI15021.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-32]
gi|256652067|dbj|BAI18001.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655124|dbj|BAI21051.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-12]
Length = 220
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 99/172 (57%), Gaps = 11/172 (6%)
Query: 76 ISGKNDNPP-------LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAIS 124
+SG D P L+P V+ T G D+ S L + RIIF+ P+ VA +
Sbjct: 1 MSGMRDRDPVEIFSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASLISA 60
Query: 125 QLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAG 184
QL+ L +++ + +I Y+N PGG + + LAIYD M +I+ V TVC G AAS +++LAG
Sbjct: 61 QLLYLESVNPNKEISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAG 120
Query: 185 GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
GEKG R+A+PNAR+M++QP G+ G D++ Q E +I R HT
Sbjct: 121 GEKGRRFALPNARVMVHQPSGGAQGQASDIEIQAREILIIRQKLNEIYREHT 172
>gi|254994793|ref|ZP_05276983.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. Mississippi]
Length = 207
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 89/145 (61%), Gaps = 11/145 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFI + +A ++QLV L + + DI +Y+N PGG + + L+IY
Sbjct: 28 DIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISLYINSPGGVVTAGLSIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVED--- 213
D M +IKPKV T+C G AAS A++LAGGE GMRYA+PN+RIM++QP G G D
Sbjct: 88 DTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMVHQPSGGFRGQATDIEI 147
Query: 214 -------VKRQVNEAVISRHVSLSF 231
+KR++NE + +H S
Sbjct: 148 HAREILEIKRRLNEIYV-KHTGKSL 171
>gi|78066693|ref|YP_369462.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
383]
gi|167586932|ref|ZP_02379320.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
ubonensis Bu]
gi|90101404|sp|Q39FE8.1|CLPP_BURS3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|77967438|gb|ABB08818.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
sp. 383]
Length = 217
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + L HT D
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKERLNQLLAQHTGQD 184
>gi|258404644|ref|YP_003197386.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfohalobium retbaense DSM 5692]
gi|257796871|gb|ACV67808.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfohalobium retbaense DSM 5692]
Length = 197
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 86/144 (59%), Gaps = 9/144 (6%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ VA +QL+ L + + D +I Y+N PGGS+ S LAIY
Sbjct: 18 DIYSRLLKDRIILLGTPIDDNVANLICAQLLFLESENPDKEINFYINSPGGSVTSGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I V T+C G AAS A++LA GE GMRYA+P+ RIML+QP G G D+
Sbjct: 78 DTMQYISAPVATLCLGQAASMGAVLLAAGEPGMRYALPHGRIMLHQPMGGFQGQATDIDI 137
Query: 217 QVNE---------AVISRHVSLSF 231
Q E +++SRH +
Sbjct: 138 QAREILRLKSSLNSILSRHTGVEL 161
>gi|56416580|ref|YP_153654.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. St. Maries]
gi|222474947|ref|YP_002563362.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. Florida]
gi|67460191|sp|Q5PBD0.1|CLPP_ANAMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763783|sp|B9KHZ4.1|CLPP_ANAMF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56387812|gb|AAV86399.1| ATP-dependent clp protease proteolytic subunit [Anaplasma marginale
str. St. Maries]
gi|222419083|gb|ACM49106.1| ATP-dependent clp protease proteolytic subunit (clpP) [Anaplasma
marginale str. Florida]
Length = 215
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 89/145 (61%), Gaps = 11/145 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFI + +A ++QLV L + + DI +Y+N PGG + + L+IY
Sbjct: 36 DIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISLYINSPGGVVTAGLSIY 95
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVED--- 213
D M +IKPKV T+C G AAS A++LAGGE GMRYA+PN+RIM++QP G G D
Sbjct: 96 DTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMVHQPSGGFRGQATDIEI 155
Query: 214 -------VKRQVNEAVISRHVSLSF 231
+KR++NE + +H S
Sbjct: 156 HAREILEIKRRLNEIYV-KHTGKSL 179
>gi|356496453|ref|XP_003517082.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic-like [Glycine max]
Length = 306
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 88/143 (61%)
Query: 84 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 143
P P+ G D+ +L R RI+F+G I+ VA +SQL+ L +D DI +++N
Sbjct: 80 PQTPSTAARGAEGDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDALDPTKDIRLFIN 139
Query: 144 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 203
GGS+ + +AIYD + ++ V TV G+AAS A++IL GG KG R+AMPN RIM++QP
Sbjct: 140 STGGSLSATMAIYDAVQLVRADVSTVALGIAASTASVILGGGTKGKRFAMPNTRIMVHQP 199
Query: 204 QSGSGGHVEDVKRQVNEAVISRH 226
G+ G DV+ Q E + +++
Sbjct: 200 LGGASGQAIDVEIQAKEVMHNKN 222
>gi|159039408|ref|YP_001538661.1| endopeptidase Clp [Salinispora arenicola CNS-205]
gi|157918243|gb|ABV99670.1| Endopeptidase Clp [Salinispora arenicola CNS-205]
Length = 213
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 83/135 (61%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
L + RIIF+G + VA R +QL+ LA D D DI +++N PGGS+YS +AIYD M +
Sbjct: 33 LLKERIIFLGSEVTDQVANRICAQLLLLAAEDPDRDINLWINSPGGSVYSGMAIYDTMQF 92
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
I V TV G+AAS ++L G KG RYA+P+ARIM++QP G GG D+ Q +
Sbjct: 93 IDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGMGGTASDIAIQAEQM 152
Query: 222 VISRHVSLSFLLLHT 236
+ ++ + + HT
Sbjct: 153 LYTKRMFQERVAFHT 167
>gi|23099911|ref|NP_693377.1| ATP-dependent Clp protease proteolytic subunit [Oceanobacillus
iheyensis HTE831]
gi|60389793|sp|Q8ENM5.1|CLPP_OCEIH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|22778142|dbj|BAC14412.1| ATP-dependent Clp protease proteolytic subunit [Oceanobacillus
iheyensis HTE831]
Length = 193
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 89/139 (64%), Gaps = 10/139 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ V+ ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIILLGSGIDDNVSNSIVAQLLFLEAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGH------ 210
D M++IKP V T+C G+AAS A +L GEKG R+A+PN+ IM++QP G+ G
Sbjct: 79 DTMNFIKPNVSTICIGMAASMGAFLLTAGEKGKRFALPNSEIMIHQPLGGTQGQATDIEI 138
Query: 211 ----VEDVKRQVNEAVISR 225
+ D+KR++NE + +
Sbjct: 139 HAKRIIDIKRRMNEIMAEK 157
>gi|334118528|ref|ZP_08492617.1| ATP-dependent Clp protease proteolytic subunit [Microcoleus
vaginatus FGP-2]
gi|333459535|gb|EGK88148.1| ATP-dependent Clp protease proteolytic subunit [Microcoleus
vaginatus FGP-2]
Length = 229
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G P+ VA ++QL+ L D + D+ M
Sbjct: 26 VVPMVLEQSGMGERAFDIYSRLLRERIVFLGTPVTDEVADSIVAQLLYLDAEDPEKDVQM 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M I+P V T+C+G+AAS A +L G G R ++P++RIM+
Sbjct: 86 YINSPGGSVTAGMAIYDTMQQIRPDVVTICYGLAASMGAFLLTAGAHGKRMSLPSSRIMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 146 HQPLGGAQGQAVDIEIQAKEILYHKRKLNQLLAHHT 181
>gi|357009615|ref|ZP_09074614.1| ClpP [Paenibacillus elgii B69]
Length = 196
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 87/135 (64%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L+ +D + DI +
Sbjct: 3 LVPMVVEQEGRGERSYDIYSRLLKDRIIFLGSAIDDDVANLVIAQLLFLSAVDPEKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + IYD M +IKP V T+C G+AAS +++L G KG RYA+PN+ +M+
Sbjct: 63 YINSPGGSVTAGMGIYDTMQFIKPDVSTICVGMAASMGSLLLTAGAKGKRYALPNSEVMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP G G D+K
Sbjct: 123 HQPLGGVRGQASDIK 137
>gi|358067641|ref|ZP_09154119.1| ATP-dependent Clp protease proteolytic subunit [Johnsonella ignava
ATCC 51276]
gi|356694294|gb|EHI55957.1| ATP-dependent Clp protease proteolytic subunit [Johnsonella ignava
ATCC 51276]
Length = 193
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 82/120 (68%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L ++RIIF+G+ +N + A ++QL+ L + D DI +Y+N PGGS+ S +AI
Sbjct: 18 FDIYSRLLKDRIIFLGEEVNDVTAGLVVAQLLFLESEDPSKDINLYINSPGGSVVSGMAI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++K V T+C G+AAS A +LAGG KG RYA+PN+ IM++QP G+ G +++
Sbjct: 78 YDTMQYVKCDVSTICMGMAASMGAFLLAGGAKGKRYALPNSEIMIHQPSGGARGQATEIQ 137
>gi|262276278|ref|ZP_06054087.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
CIP 101886]
gi|262220086|gb|EEY71402.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
CIP 101886]
Length = 207
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 79 KNDNPPLMPAVM------TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLA 130
KN P +M A++ T G D+ S L + R+IF+ + +A ++QL+ L
Sbjct: 6 KNGMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLE 65
Query: 131 TIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMR 190
+ + D DI +Y+N PGGS+ + ++IYD M +IKP V TVC G A S A +LAGG KG R
Sbjct: 66 SENPDKDIFLYINSPGGSVTAGMSIYDTMQYIKPDVSTVCMGQACSMGAFLLAGGAKGKR 125
Query: 191 YAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
Y +PN+R+M++QP G G D++ E + +H + L HT
Sbjct: 126 YCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKHRLNTLLAEHT 171
>gi|354586092|ref|ZP_09004765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
lactis 154]
gi|353183068|gb|EHB48600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
lactis 154]
Length = 198
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N +VA I+Q++ L+ D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G KG RYA+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYALPNSEIMIHQPLGGAQGQATDIE 137
>gi|407795375|ref|ZP_11142334.1| ATP-dependent Clp protease proteolytic subunit [Salimicrobium sp.
MJ3]
gi|407020260|gb|EKE32973.1| ATP-dependent Clp protease proteolytic subunit [Salimicrobium sp.
MJ3]
Length = 192
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 84/130 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ V+ ++QL+ LA D D DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIMLGSPIDDNVSNSIVAQLLFLAADDPDKDISLYINSPGGSITAGMAIF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +L G +G RYA+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICTGMAASMGAFLLNAGTEGKRYALPNSEVMIHQPLGGTQGQASDIEI 138
Query: 217 QVNEAVISRH 226
N + R
Sbjct: 139 HANRIIRMRE 148
>gi|224179483|ref|YP_002601006.1| proteolytic subunit 2 of clp protease [Monomastix sp. OKE-1]
gi|217314526|gb|ACK36869.1| proteolytic subunit 2 of clp protease [Monomastix sp. OKE-1]
Length = 201
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 92/145 (63%), Gaps = 5/145 (3%)
Query: 88 AVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 143
A PG P +DL + L+R R++F+G ++ +A + + ++ L+ DE I +Y+N
Sbjct: 9 AFRLPGEPTPQWIDLYNRLYRERVLFLGSDLDDELANQLVGIMIYLSAEDESKRIFIYIN 68
Query: 144 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 203
PGGS+ LA+YD M I+ +V T+C G+AAS A+ +LAGGE+G R A+P++R+M++QP
Sbjct: 69 SPGGSVTCGLAVYDAMHHIQARVTTLCIGIAASMASFVLAGGERGHRIALPHSRVMIHQP 128
Query: 204 QSGSGGHVEDVKRQVNEAV-ISRHV 227
Q GS G DV + E + I R +
Sbjct: 129 QGGSQGQASDVTAEAEEVMRIRRQI 153
>gi|337750712|ref|YP_004644874.1| protein ClpP [Paenibacillus mucilaginosus KNP414]
gi|379723759|ref|YP_005315890.1| protein ClpP [Paenibacillus mucilaginosus 3016]
gi|386726512|ref|YP_006192838.1| protein ClpP [Paenibacillus mucilaginosus K02]
gi|336301901|gb|AEI45004.1| ClpP [Paenibacillus mucilaginosus KNP414]
gi|378572431|gb|AFC32741.1| ClpP [Paenibacillus mucilaginosus 3016]
gi|384093637|gb|AFH65073.1| protein ClpP [Paenibacillus mucilaginosus K02]
Length = 196
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 14/155 (9%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G I+ VA I+QL+ LA D D DI +
Sbjct: 3 LVPMVVEQEGRGERSYDIYSRLLKDRIIFLGSAIDDDVANLVIAQLLFLAATDPDKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + IYD M +IKP V T+C G+AAS +++L G G R+A+PN+ +M+
Sbjct: 63 YINSPGGSVTAGMGIYDTMQFIKPDVSTICVGLAASMGSLLLTAGAPGKRFALPNSEVMI 122
Query: 201 NQPQSGSGGHVEDV----------KRQVNEAVISR 225
+QP G G D+ KR++NE ++R
Sbjct: 123 HQPLGGVRGQASDIKIHADWIIKTKRKLNEIYVAR 157
>gi|83589392|ref|YP_429401.1| ATP-dependent Clp protease proteolytic subunit [Moorella
thermoacetica ATCC 39073]
gi|115311785|sp|Q2RL31.1|CLPP_MOOTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|83572306|gb|ABC18858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorella
thermoacetica ATCC 39073]
Length = 199
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA I+Q++ L D D DI +Y+N PGGSI + +AI+
Sbjct: 20 DIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGSISAGMAIF 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +I+P V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 80 DTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAVDIE 138
>gi|224074500|ref|XP_002304381.1| predicted protein [Populus trichocarpa]
gi|222841813|gb|EEE79360.1| predicted protein [Populus trichocarpa]
Length = 220
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 81/128 (63%)
Query: 93 GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV 152
G D +L R RI+F+G I+ VA ISQL+ L D DI +++NCPGGS+ +
Sbjct: 3 GAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNCPGGSLSAS 62
Query: 153 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVE 212
+AIYD + ++ V T+ G++AS A+IIL GG KG R+AMPN RIM++QP G+ G
Sbjct: 63 MAIYDVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAI 122
Query: 213 DVKRQVNE 220
DV+ Q E
Sbjct: 123 DVEIQARE 130
>gi|428320528|ref|YP_007118410.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
gi|428244208|gb|AFZ09994.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
Length = 229
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G P+ VA ++QL+ L D + D+ M
Sbjct: 26 VVPMVLEQSGMGERAFDIYSRLLRERIVFLGTPVTDEVADSIVAQLLYLDAEDPEKDVQM 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M I+P V T+C+G+AAS A +L G G R ++P++RIM+
Sbjct: 86 YINSPGGSVTAGMAIYDTMQQIRPDVVTICYGLAASMGAFLLTAGAHGKRMSLPSSRIMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 146 HQPLGGAQGQAVDIEIQAKEILYHKRKLNQLLAHHT 181
>gi|440781233|ref|ZP_20959575.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
pasteurianum DSM 525]
gi|440220838|gb|ELP60044.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
pasteurianum DSM 525]
Length = 194
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 80/123 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIVFLGEDVNDATASLIVAQLLFLESEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138
Query: 217 QVN 219
N
Sbjct: 139 HAN 141
>gi|424865494|ref|ZP_18289359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86B]
gi|400758762|gb|EJP72964.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86B]
Length = 204
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 97/162 (59%), Gaps = 4/162 (2%)
Query: 79 KNDNPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
+N L+P V+ TP G D+ S L + R+IF+ PI+ ++ ++QL+ L + +
Sbjct: 2 ENIQSALIPMVIEQTPRGERSFDIYSRLLKERVIFLTGPIDDHISNLVVAQLLFLESENP 61
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
+ DI +Y+N PGGSI + LAIYD M +I V T+C G AAS A++LAGG+KG R+A+P
Sbjct: 62 EKDISIYINSPGGSISAGLAIYDTMQFISSSVSTMCIGQAASMGALLLAGGDKGKRFALP 121
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
N+R+M++QP G G D + E + + + L HT
Sbjct: 122 NSRVMIHQPLGGFQGQASDFEIHAKEILYMKKIVNEILAKHT 163
>gi|424863302|ref|ZP_18287215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86A]
gi|400757923|gb|EJP72134.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86A]
Length = 200
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L + R+IF+ PI+ ++ ++QL+ L + + + DI +
Sbjct: 8 LIPMVIEQTPRGERSFDIYSRLLKERVIFLSGPIDDYISNLVVAQLLFLESENPEKDISI 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI + LAIYD M ++KP + T+C G AAS A++LAGG++ R+A+PN+RIM+
Sbjct: 68 YINSPGGSISAGLAIYDTMQFVKPSISTMCIGQAASMGALLLAGGDEKKRFALPNSRIMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D + E + + + L HT
Sbjct: 128 HQPLGGFQGQASDFEIHAKEILHMKKIVNEILAKHT 163
>gi|428217239|ref|YP_007101704.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
sp. PCC 7367]
gi|427989021|gb|AFY69276.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena
sp. PCC 7367]
Length = 232
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G ++ +A +SQL+ L D + DI +
Sbjct: 32 IVPMVVEQSGRGERAFDIYSRLLRERIVFLGTQVDDNLASLIMSQLLFLEAEDPEKDIYL 91
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD + ++P V T+C G+AAS A +L+ G KG R A+PNARIM+
Sbjct: 92 YINSPGGSVTAGMAIYDTLQHVQPDVSTICMGLAASMGAFLLSAGAKGKRMALPNARIMI 151
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + ++ L HT
Sbjct: 152 HQPLGGARGQAVDIEIQAKEILYHKNTLNQLLAEHT 187
>gi|46198558|ref|YP_004225.1| ATP-dependent Clp protease proteolytic subunit [Thermus
thermophilus HB27]
gi|46196180|gb|AAS80598.1| ATP-dependent clp protease proteolytic subunit [Thermus
thermophilus HB27]
Length = 212
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 91/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 36 DIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPGGEVDAGLAIY 95
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P+A++M++QP G G D+
Sbjct: 96 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAI 155
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + ++ + L HT
Sbjct: 156 QAQEILKAKKLLNEILAKHT 175
>gi|342216862|ref|ZP_08709509.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
sp. oral taxon 375 str. F0436]
gi|341587752|gb|EGS31152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Peptoniphilus
sp. oral taxon 375 str. F0436]
Length = 194
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 83/130 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ +N ++A ++QL+ L + D D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKERIIFLSGEVNDVMADLIVAQLLFLESEDPDKDIQIYINSPGGSVSAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LA G G RYA+PNA IM++QP G+ G D+K
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLAAGTIGKRYALPNADIMIHQPLGGAQGQASDIKI 138
Query: 217 QVNEAVISRH 226
+ + +R
Sbjct: 139 HAEKILKTRE 148
>gi|410446864|ref|ZP_11300967.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [SAR86
cluster bacterium SAR86E]
gi|409980536|gb|EKO37287.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [SAR86
cluster bacterium SAR86E]
Length = 204
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 99/159 (62%), Gaps = 15/159 (9%)
Query: 82 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ TP G D+ S L + RIIF+ PI+ ++ ++QL+ L + + + D
Sbjct: 5 NSGLVPMVVEQTPRGERAFDIYSRLLKERIIFLSGPIDDYISNLVVAQLLFLESENPEKD 64
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGG I S LAIYD M +I P+V T+C G AAS +++LAGG KG R+A+ N+R
Sbjct: 65 ISIYINSPGGVISSGLAIYDTMQFIAPEVSTLCIGQAASMGSLLLAGGAKGKRFALTNSR 124
Query: 198 IMLNQPQSGSGGHVED----------VKRQVNEAVISRH 226
IM++QP G G D VK++VNE ++S+H
Sbjct: 125 IMIHQPLGGFQGQASDFEIHAKEMLLVKQKVNE-ILSKH 162
>gi|229164087|ref|ZP_04292023.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
R309803]
gi|228619323|gb|EEK76213.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
R309803]
Length = 193
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|294507446|ref|YP_003571504.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
M8]
gi|294343774|emb|CBH24552.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
M8]
Length = 261
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 84/143 (58%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+FIG PIN +A ++QL+ L + I +Y+N PGG IYS L +Y
Sbjct: 65 DIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGSSQPINIYINSPGGVIYSGLGVY 124
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ + T C G+AAS +++LAGGE G R +PN+R+M++QP G+ G D++
Sbjct: 125 DTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLPNSRVMMHQPMGGTEGQASDIEI 184
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + L HT D
Sbjct: 185 QAKEMAWLKKRLYQILSFHTGKD 207
>gi|209521458|ref|ZP_03270166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. H160]
gi|209498114|gb|EDZ98261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. H160]
Length = 217
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 5/155 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++Q++ L + + D DI
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDIYF 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
+QP G+ G D++ Q E + + L+ LL H
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKD-RLNHLLAH 179
>gi|229014309|ref|ZP_04171428.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
DSM 2048]
gi|229099577|ref|ZP_04230505.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-29]
gi|229105752|ref|ZP_04236381.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-28]
gi|229118641|ref|ZP_04247993.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock1-3]
gi|407707620|ref|YP_006831205.1| proton-translocating NADH-quinone oxidoreductase subunit L
[Bacillus thuringiensis MC28]
gi|423377055|ref|ZP_17354339.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1O-2]
gi|423440156|ref|ZP_17417062.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4X2-1]
gi|423449686|ref|ZP_17426565.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5O-1]
gi|423463229|ref|ZP_17439997.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6O-1]
gi|423471294|ref|ZP_17448038.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6O-2]
gi|423490288|ref|ZP_17466970.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BtB2-4]
gi|423496012|ref|ZP_17472656.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
CER057]
gi|423497194|ref|ZP_17473811.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
CER074]
gi|423521016|ref|ZP_17497489.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA4-10]
gi|423532582|ref|ZP_17509000.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB2-9]
gi|423542155|ref|ZP_17518545.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB4-10]
gi|423548388|ref|ZP_17524746.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB5-5]
gi|423597605|ref|ZP_17573605.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD078]
gi|423613267|ref|ZP_17589127.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD107]
gi|423619156|ref|ZP_17594989.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD115]
gi|423621820|ref|ZP_17597598.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD148]
gi|423660050|ref|ZP_17635219.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM022]
gi|228664833|gb|EEL20323.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock1-3]
gi|228677641|gb|EEL31889.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-28]
gi|228683873|gb|EEL37823.1| ATP-dependent Clp protease proteolytic subunit [Bacillus cereus
Rock3-29]
gi|228746909|gb|EEL96793.1| ATP-dependent Clp protease proteolytic subunit [Bacillus mycoides
DSM 2048]
gi|401127967|gb|EJQ35674.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG5O-1]
gi|401149848|gb|EJQ57315.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
CER057]
gi|401162914|gb|EJQ70267.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
CER074]
gi|401169492|gb|EJQ76738.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB4-10]
gi|401176062|gb|EJQ83260.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB5-5]
gi|401180113|gb|EJQ87276.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuA4-10]
gi|401239137|gb|EJR45569.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD078]
gi|401242429|gb|EJR48804.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD107]
gi|401251869|gb|EJR58139.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD115]
gi|401262849|gb|EJR68986.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VD148]
gi|401303711|gb|EJS09272.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
VDM022]
gi|401639657|gb|EJS57394.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG1O-2]
gi|402419927|gb|EJV52199.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG4X2-1]
gi|402422100|gb|EJV54342.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6O-1]
gi|402429967|gb|EJV62049.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BtB2-4]
gi|402432774|gb|EJV64830.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
BAG6O-2]
gi|402464836|gb|EJV96524.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
HuB2-9]
gi|407385305|gb|AFU15806.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
thuringiensis MC28]
Length = 193
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|254410742|ref|ZP_05024520.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Coleofasciculus chthonoplastes PCC 7420]
gi|196182097|gb|EDX77083.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Coleofasciculus chthonoplastes PCC 7420]
Length = 202
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSDLANLIVAQLLFLEADDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + IYD M+ I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIYDTMNQIRPDVCTICVGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQASDIEIQAKEILYHKQRLNQLLAEHT 156
>gi|339021745|ref|ZP_08645737.1| Clp protease proteolytic subunit ClpP [Acetobacter tropicalis NBRC
101654]
gi|338751241|dbj|GAA09041.1| Clp protease proteolytic subunit ClpP [Acetobacter tropicalis NBRC
101654]
Length = 234
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 86/141 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + RIIF+ P+ VA +QL+ L +++ +I Y+N PGG + + LAI
Sbjct: 45 FDIYSRLLQERIIFLTGPVYDQVASLISAQLLYLESVNPTKEISFYINSPGGVVSAGLAI 104
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +I+ V TVC G AAS +++LAGGEKG RYA+PNAR+M++QP G+ G D++
Sbjct: 105 YDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGHRYALPNARVMVHQPSGGAQGQASDIE 164
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E +I R HT
Sbjct: 165 IQAKEILIIRQRLNEIYREHT 185
>gi|209523050|ref|ZP_03271607.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
maxima CS-328]
gi|376001697|ref|ZP_09779556.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
gi|209496637|gb|EDZ96935.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Arthrospira
maxima CS-328]
gi|375329926|emb|CCE15309.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Arthrospira sp. PCC 8005]
Length = 200
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R+RI+F+G +NS VA ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGTQVNSDVANLIVAQLLFLDAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + L I+D M+ I+P V TVC G+AAS A +L+ G KG RY++P++RIM+
Sbjct: 61 YINSPGGGVNAGLGIFDTMNHIRPDVCTVCLGLAASMGAFLLSAGAKGKRYSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYLKRQLNENLAKHT 156
>gi|221215056|ref|ZP_03588023.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD1]
gi|421469009|ref|ZP_15917506.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia multivorans ATCC BAA-247]
gi|421479611|ref|ZP_15927294.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia multivorans CF2]
gi|221164992|gb|EED97471.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD1]
gi|400222687|gb|EJO53050.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia multivorans CF2]
gi|400230734|gb|EJO60485.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia multivorans ATCC BAA-247]
Length = 208
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 17 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 76
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 77 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 136
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + L HT D
Sbjct: 137 HQPLGGARGQASDIEIQAREILYLKERLNHLLAQHTGQD 175
>gi|298243372|ref|ZP_06967179.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
gi|297556426|gb|EFH90290.1| Endopeptidase Clp [Ktedonobacter racemifer DSM 44963]
Length = 215
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 94 GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVL 153
G + +L ++RII IG+PI+ MVA + I L+ L D DI +YLN PGGS+ + L
Sbjct: 37 GSYGIEDLLLKDRIILIGKPIDDMVAYQTIMLLLYLEHEDSSQDISLYLNSPGGSVTAGL 96
Query: 154 AIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ-SGS-GGHV 211
AIYD M +IKP V TVC G+A S A+++LAGG KG R+++PN+ I+++QP SG G
Sbjct: 97 AIYDTMQYIKPDVSTVCVGMAMSMASVLLAGGAKGKRFSLPNSTILIHQPLISGEIAGQA 156
Query: 212 EDVKRQVNEAVISRHVSLSFLLLHT 236
D++ + E + +R L HT
Sbjct: 157 SDIEIEAREIIRTRSELNELLAKHT 181
>gi|357633385|ref|ZP_09131263.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. FW1012B]
gi|357581939|gb|EHJ47272.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. FW1012B]
Length = 204
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 4/160 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
P +P V+ G D+ S L R+RII +G ++ VA +QL+ L + D + +I
Sbjct: 2 PTIPIVIETTGRSERAYDIYSRLLRDRIILLGSAVDDHVANLICAQLLFLESEDPEKEIF 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
MY+N PGGS+ + LAIYD M ++ PKV T+C G AAS A++L G GMRYA+P++RIM
Sbjct: 62 MYINSPGGSVTAGLAIYDTMQYVLPKVSTLCMGQAASMGALLLCAGATGMRYALPHSRIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
++QP G G D+ E + R + HT D
Sbjct: 122 IHQPMGGFQGQATDIDIHAREILRIRESLNEIMARHTGQD 161
>gi|83814886|ref|YP_445563.1| ATP-dependent Clp protease proteolytic subunit [Salinibacter ruber
DSM 13855]
gi|83756280|gb|ABC44393.1| Clp protease [Salinibacter ruber DSM 13855]
Length = 246
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 84/143 (58%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+FIG PIN +A ++QL+ L + I +Y+N PGG IYS L +Y
Sbjct: 50 DIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGSSQPINIYINSPGGVIYSGLGVY 109
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ + T C G+AAS +++LAGGE G R +PN+R+M++QP G+ G D++
Sbjct: 110 DTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLPNSRVMMHQPMGGTEGQASDIEI 169
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + L HT D
Sbjct: 170 QAKEMAWLKKRLYQILSFHTGKD 192
>gi|289422712|ref|ZP_06424552.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Peptostreptococcus anaerobius 653-L]
gi|289156891|gb|EFD05516.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Peptostreptococcus anaerobius 653-L]
Length = 194
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G +N A ++Q++ L D D DI +
Sbjct: 3 LVPYVVEQDGRGERSYDIYSRLLKDRIIFLGDEVNDQTASLVVAQMLFLEADDPDKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IK V T+C G+AAS A +LA G KG RYA+PN+ +M+
Sbjct: 63 YINSPGGSVTAGMAIYDTMQYIKADVSTICVGMAASMGAFLLAAGAKGKRYALPNSTVMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G D++
Sbjct: 123 HQPLGGTRGQATDIE 137
>gi|30265176|ref|NP_847553.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Ames]
gi|47530690|ref|YP_022039.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49187986|ref|YP_031239.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Sterne]
gi|65317122|ref|ZP_00390081.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Bacillus
anthracis str. A2012]
gi|165869926|ref|ZP_02214583.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0488]
gi|167635263|ref|ZP_02393578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0442]
gi|167640458|ref|ZP_02398721.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0193]
gi|170687959|ref|ZP_02879172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0465]
gi|170707727|ref|ZP_02898178.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0389]
gi|177652976|ref|ZP_02935303.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0174]
gi|190567666|ref|ZP_03020578.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. Tsiankovskii-I]
gi|227817909|ref|YP_002817918.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. CDC 684]
gi|229599890|ref|YP_002869370.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. A0248]
gi|254686423|ref|ZP_05150282.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. CNEVA-9066]
gi|254735629|ref|ZP_05193336.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Western North America USA6153]
gi|254744284|ref|ZP_05201964.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Kruger B]
gi|254755582|ref|ZP_05207615.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Vollum]
gi|254757037|ref|ZP_05209065.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. Australia 94]
gi|386739003|ref|YP_006212184.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus
anthracis str. H9401]
gi|421508903|ref|ZP_15955813.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. UR-1]
gi|421639800|ref|ZP_16080390.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. BF1]
gi|67460531|sp|Q81X63.1|CLPP2_BACAN RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|30259853|gb|AAP29039.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. Ames]
gi|47505838|gb|AAT34514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. 'Ames Ancestor']
gi|49181913|gb|AAT57289.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. Sterne]
gi|164714249|gb|EDR19769.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0488]
gi|167511501|gb|EDR86884.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0193]
gi|167529306|gb|EDR92058.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0442]
gi|170127284|gb|EDS96160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0389]
gi|170668068|gb|EDT18818.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0465]
gi|172081751|gb|EDT66821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0174]
gi|190561082|gb|EDV15055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. Tsiankovskii-I]
gi|227003920|gb|ACP13663.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. CDC 684]
gi|229264298|gb|ACQ45935.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
anthracis str. A0248]
gi|384388855|gb|AFH86516.1| ATP-dependent Clp protease proteolytic subunit 1 [Bacillus
anthracis str. H9401]
gi|401821079|gb|EJT20239.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. UR-1]
gi|403393152|gb|EJY90398.1| ATP-dependent Clp protease proteolytic subunit [Bacillus anthracis
str. BF1]
Length = 193
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEAMIHQPLGGAQGQATEIE 137
>gi|427404659|ref|ZP_18895399.1| ATP-dependent Clp protease proteolytic subunit [Massilia timonae
CCUG 45783]
gi|425716830|gb|EKU79799.1| ATP-dependent Clp protease proteolytic subunit [Massilia timonae
CCUG 45783]
Length = 207
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + R+IF+ P+N +A ++Q++ L + + D DI +
Sbjct: 14 MVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVNDQMANLIVAQMLFLESENPDKDISL 73
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAI+D M++IKP V T+C G+AAS A +LA G KG R+++PN+R+M+
Sbjct: 74 YINSPGGSVSAGLAIFDTMNFIKPDVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRVMI 133
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP GS G D++ Q E + R
Sbjct: 134 HQPSGGSQGMASDIEIQAKEILYLRE 159
>gi|57238933|ref|YP_180069.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58578866|ref|YP_197078.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|67460160|sp|Q5HBX5.1|CLPP_EHRRW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|57161012|emb|CAH57918.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58417492|emb|CAI26696.1| ATP-dependent CLP protease proteolytic subunit [Ehrlichia
ruminantium str. Welgevonden]
Length = 198
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 81/124 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIFI PI +A ++QL+ L + + DI MY+N PGG + + L+IY
Sbjct: 19 DIYSRLLKERIIFITGPIEDQMASLVVAQLIFLEAENPEKDISMYINSPGGVVTAGLSIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP++ T+C G AAS +++LA GEKGMR A+PN+RIM++QP G G D++
Sbjct: 79 DTMQYVKPRIATLCLGQAASMGSLLLAAGEKGMRCALPNSRIMIHQPSGGFQGQATDIEI 138
Query: 217 QVNE 220
E
Sbjct: 139 HAKE 142
>gi|423557331|ref|ZP_17533634.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MC67]
gi|401193139|gb|EJR00146.1| ATP-dependent Clp protease proteolytic subunit 2 [Bacillus cereus
MC67]
Length = 193
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP+V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|197302444|ref|ZP_03167499.1| hypothetical protein RUMLAC_01172 [Ruminococcus lactaris ATCC
29176]
gi|197298342|gb|EDY32887.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Ruminococcus lactaris ATCC 29176]
Length = 193
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 88/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +N + A ++QL+ L D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPDKDIQLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V TVC G+AAS A +L+GG KG R+A+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLSGGAKGKRFALPNAEIMIHQPLGGAQGQATEIQI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
+ +R S L +T
Sbjct: 139 AAEHILRTRKTLNSILAANT 158
>gi|171059225|ref|YP_001791574.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
cholodnii SP-6]
gi|226706459|sp|B1Y6H3.1|CLPP_LEPCP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|170776670|gb|ACB34809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
cholodnii SP-6]
Length = 202
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 79 KNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDE 134
+ N ++P V+ G D+ S L R R+IF+ P+N A ++QL+ L + +
Sbjct: 5 ETQNLGMVPIVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQSANLVVAQLLFLESENP 64
Query: 135 DADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194
D DI Y+N PGGS+ + ++IYD M +IKP+V T+C G+AAS A +LA G KG R+++P
Sbjct: 65 DKDISFYINSPGGSVSAGMSIYDTMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLP 124
Query: 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
N++IM++QP G+ G D++ E + +R
Sbjct: 125 NSKIMIHQPLGGAQGQATDIEIHAREILKTRE 156
>gi|397643686|gb|EJK76020.1| hypothetical protein THAOC_02238 [Thalassiosira oceanica]
Length = 221
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 89/141 (63%)
Query: 85 LMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNC 144
L+P V + G LD+ S L ++RI+ +G +N +A ++QL+ LA D + DI +Y+N
Sbjct: 21 LVPTVGSDSGQLDVVSRLLKDRILLLGTDVNDEMANVLVAQLLYLANEDPEKDITIYINS 80
Query: 145 PGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204
PGGS+ + LAIYD M +I V TVCFG+AAS A +L G G R ++PNARIM++QP
Sbjct: 81 PGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGAPGKRKSLPNARIMIHQPL 140
Query: 205 SGSGGHVEDVKRQVNEAVISR 225
G+ G D++ Q E + +
Sbjct: 141 GGAQGQAADIEIQAKEILFVK 161
>gi|55980584|ref|YP_143881.1| ATP-dependent Clp protease proteolytic subunit [Thermus
thermophilus HB8]
gi|381190341|ref|ZP_09897864.1| ATP-dependent Clp protease proteolytic subunit [Thermus sp. RL]
gi|384430811|ref|YP_005640171.1| ATP-dependent Clp protease proteolytic subunit [Thermus
thermophilus SG0.5JP17-16]
gi|386360877|ref|YP_006059122.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
thermophilus JL-18]
gi|60389682|sp|Q72L15.2|CLPP_THET2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460210|sp|Q5SKM8.1|CLPP_THET8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|55771997|dbj|BAD70438.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
thermophilus HB8]
gi|333966279|gb|AEG33044.1| ATP-dependent Clp protease proteolytic subunit [Thermus
thermophilus SG0.5JP17-16]
gi|380451934|gb|EIA39535.1| ATP-dependent Clp protease proteolytic subunit [Thermus sp. RL]
gi|383509904|gb|AFH39336.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
thermophilus JL-18]
Length = 194
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 91/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPGGEVDAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P+A++M++QP G G D+
Sbjct: 78 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + ++ + L HT
Sbjct: 138 QAQEILKAKKLLNEILAKHT 157
>gi|423062476|ref|ZP_17051266.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis C1]
gi|406716384|gb|EKD11535.1| ATP-dependent Clp protease proteolytic subunit ClpP [Arthrospira
platensis C1]
Length = 200
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R+RI+F+G +NS VA ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGTQVNSDVANLIVAQLLFLDAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + L I+D M+ I+P V TVC G+AAS A +L+ G KG RY++P++RIM+
Sbjct: 61 YINSPGGGVNAGLGIFDTMNHIRPDVCTVCLGLAASMGAFLLSAGAKGKRYSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYLKRQLNENLAKHT 156
>gi|398833401|ref|ZP_10591533.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Herbaspirillum sp. YR522]
gi|398221568|gb|EJN07975.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Herbaspirillum sp. YR522]
Length = 208
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDGMANLIVAQLLFLESENPDKDISL 76
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AI+D M +IKP+V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 77 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 137 HQPLGGAQGQASDIEIQAREILYLRE 162
>gi|420149059|ref|ZP_14656240.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Capnocytophaga sp. oral taxon 335 str. F0486]
gi|394754121|gb|EJF37562.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Capnocytophaga sp. oral taxon 335 str. F0486]
Length = 219
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 87/138 (63%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G IN VA +QL+ L ++D DI +Y+
Sbjct: 31 PYIMEERQLNVAQMDVFSRLMMDRIIFLGTDINDQVANIVTAQLLFLESVDSAKDIQIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+Y+ L IYD M +IKP V T+C G+AAS AA++L G +G R A+P++R+M++Q
Sbjct: 91 NSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGTEGKRSALPHSRVMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNE 220
P G+ G D++ + E
Sbjct: 151 PSGGAQGVASDMEINLKE 168
>gi|343127912|ref|YP_004777843.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
bissettii DN127]
gi|342222600|gb|AEL18778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
bissettii DN127]
Length = 194
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D + DI +
Sbjct: 4 LIPTVIESTGNYERVFDIYSRLLRERIIFLSGEINDPKADIVIAQLLFLESEDSNKDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LAGG KG R ++ +RIM+
Sbjct: 64 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLAYSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 124 HQPWGGISGQASDINIQANE 143
>gi|295676517|ref|YP_003605041.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1002]
gi|295436360|gb|ADG15530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1002]
Length = 217
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 5/155 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++Q++ L + + D DI
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDIYF 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
+QP G+ G D++ Q E ++ L+ LL H
Sbjct: 146 HQPLGGARGQASDIEIQARE-ILYLKDRLNHLLAH 179
>gi|398817357|ref|ZP_10575983.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
gi|398030411|gb|EJL23825.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
sp. BC25]
Length = 193
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++QL+ LA D DI +Y+N PGGS+ + +AI
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDQVANAVVAQLLFLAAEDPKKDIHLYINSPGGSVTAGMAII 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D MS+I P V T+C G+AAS A++L G G RYA+PNA +ML+QP GS G D+K
Sbjct: 79 DTMSFIAPDVSTICTGMAASMGAMLLVAGAPGKRYALPNAEVMLHQPWGGSQGQASDIKI 138
Query: 217 QVNEAVISRHVSLSFLLL 234
+ I RH ++ + ++
Sbjct: 139 AADR--IMRHRNMLYTII 154
>gi|374604920|ref|ZP_09677867.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
dendritiformis C454]
gi|374389443|gb|EHQ60818.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
dendritiformis C454]
Length = 192
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N +VA I+Q++ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGSQVNDVVANSIIAQMLFLQADDPDKDIHLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQHIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAEGQASDIE 137
>gi|224533546|ref|ZP_03674135.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi CA-11.2a]
gi|224513219|gb|EEF83581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi CA-11.2a]
Length = 194
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D DI +
Sbjct: 4 LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LAGG KG R ++ +RIM+
Sbjct: 64 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGTKGKRESLTYSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 124 HQPWGGISGQASDINIQANE 143
>gi|161524522|ref|YP_001579534.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
multivorans ATCC 17616]
gi|189350722|ref|YP_001946350.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
multivorans ATCC 17616]
gi|221198217|ref|ZP_03571263.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD2M]
gi|221209201|ref|ZP_03582193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD2]
gi|254252156|ref|ZP_04945474.1| Peptidase S14 [Burkholderia dolosa AUO158]
gi|416986795|ref|ZP_11938505.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
TJI49]
gi|124894765|gb|EAY68645.1| Peptidase S14 [Burkholderia dolosa AUO158]
gi|160341951|gb|ABX15037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans ATCC 17616]
gi|189334744|dbj|BAG43814.1| ATP-dependent Clp protease [Burkholderia multivorans ATCC 17616]
gi|221170939|gb|EEE03394.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD2]
gi|221182149|gb|EEE14550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD2M]
gi|325518991|gb|EGC98514.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
TJI49]
Length = 217
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + + L HT D
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKERLNHLLAQHTGQD 184
>gi|297616502|ref|YP_003701661.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Syntrophothermus lipocalidus DSM 12680]
gi|297144339|gb|ADI01096.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Syntrophothermus lipocalidus DSM 12680]
Length = 203
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 20/157 (12%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA I+Q + L D D DI Y+N PGGSI + +AI+
Sbjct: 23 DIYSRLLKDRIVFLGSPIDDQVANLIIAQFLFLEAEDPDKDIHFYINSPGGSISAGMAIF 82
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D M +++P V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D+
Sbjct: 83 DTMQYLRPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPIGGTQGQATDIEI 142
Query: 215 --------KRQVNE----------AVISRHVSLSFLL 233
K+++N+ VI R V F +
Sbjct: 143 HARRIVNLKKRLNQILAERTGQKLEVIERDVERDFFM 179
>gi|120434592|ref|YP_860283.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
KT0803]
gi|117576742|emb|CAL65211.1| ATP-dependent Clp protease proteolytic subunit [Gramella forsetii
KT0803]
Length = 225
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 18/173 (10%)
Query: 85 LMPAVMTP---------GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDED 135
++P MTP +D+ S L +RIIF+G IN VA +QL+ L + D
Sbjct: 29 MLPQGMTPNIIEERQMNAVAMDVFSRLMMDRIIFLGTGINEQVANIVQAQLLFLESTDAS 88
Query: 136 ADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPN 195
DI +Y+N PGGS+Y+ L IYD M +IKP V T+C G+AAS A++L GE G R +P+
Sbjct: 89 KDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGEDGKRSGLPH 148
Query: 196 ARIMLNQPQSGSGGHVEDVKRQVNEAV---------ISRHVSLSFLLLHTLND 239
+R+M++QP G+ G D++ E V I++H ++ +H +D
Sbjct: 149 SRVMIHQPMGGAQGQASDIEITAREIVTLKEELYKIIAKHSGQTYEKVHEDSD 201
>gi|427418142|ref|ZP_18908325.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7375]
gi|425760855|gb|EKV01708.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptolyngbya
sp. PCC 7375]
Length = 201
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + + + ++Q++ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQQVTAESSNLIVAQMLFLEAEDPERDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M+ IKP V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMNHIKPDVSTICVGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYIKKTLNDALAAHT 156
>gi|384439472|ref|YP_005654196.1| ATP-dependent Clp protease proteolytic subunit [Thermus sp.
CCB_US3_UF1]
gi|359290605|gb|AEV16122.1| ATP-dependent Clp protease proteolytic subunit [Thermus sp.
CCB_US3_UF1]
Length = 198
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 92/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 22 DIYSRLLKDRIIFLGTPIDAQVANTIVAQLLFLDAQNPNQEIRLYINSPGGEVDAGLAIY 81
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P++++M++QP G+ G D+
Sbjct: 82 DTMQFVRAPVSTIVIGLAASMAAVILAAGEKGRRYALPHSKVMIHQPWGGARGTASDIAI 141
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + ++ + L HT
Sbjct: 142 QAQEILKAKKLLNEILAKHT 161
>gi|219129357|ref|XP_002184857.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403642|gb|EEC43593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 188
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 89/137 (64%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L ++RI+ +GQ ++ VA ++QL+ LA D + DI +Y+N PGGS+ + +AI
Sbjct: 1 MDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAI 60
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++ V TVCFG+AAS A +L G KG R A+PN+RIM++QP G+ G D++
Sbjct: 61 YDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIE 120
Query: 216 RQVNEAVISRHVSLSFL 232
Q E + R V +++
Sbjct: 121 IQAKEILFIREVLNTYI 137
>gi|300866516|ref|ZP_07111206.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
sp. PCC 6506]
gi|300335473|emb|CBN56366.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
sp. PCC 6506]
Length = 229
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G P++ VA ++QL+ L D + DI +
Sbjct: 26 VVPMVLEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++P V T+C+G+AAS A ++A G G R ++P++RIM+
Sbjct: 86 YINSPGGSVTAGMAIYDTMQQVRPDVVTICYGLAASMGAFLMAAGAAGKRMSLPSSRIMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 146 HQPLGGAQGQAVDIEIQAKEILYHKRKLNELLAHHT 181
>gi|269837422|ref|YP_003319650.1| endopeptidase Clp [Sphaerobacter thermophilus DSM 20745]
gi|269786685|gb|ACZ38828.1| Endopeptidase Clp [Sphaerobacter thermophilus DSM 20745]
Length = 209
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 84/126 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R+RIIF+G P++ +A I+Q++ L + + DI +Y+N PGG +Y+ LAIY
Sbjct: 28 DIYSRLLRDRIIFLGTPVDDQIANAIIAQMIFLEYENPEQDIKLYINSPGGLVYAGLAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M I+ V T C G+ AS AA++LA G KG R+A+PN+RI+++Q SG G V D++
Sbjct: 88 DTMQMIRCDVATYCIGLGASMAAVLLAAGTKGKRFALPNSRILIHQGSSGFRGSVPDIEI 147
Query: 217 QVNEAV 222
Q E +
Sbjct: 148 QARETI 153
>gi|113475211|ref|YP_721272.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
erythraeum IMS101]
gi|110166259|gb|ABG50799.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
erythraeum IMS101]
Length = 203
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R+RII++G+ I+S +A + QL+ L + D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIIYLGEAIDSELANLIVGQLLYLDSEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + IYD M ++P V T+C G+AAS A +L+GG KG R ++P++RIM+
Sbjct: 61 YINSPGGSVSAGMGIYDTMRHVRPDVCTICMGIAASMGAFLLSGGTKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKYLNECLAEHT 156
>gi|434391262|ref|YP_007126209.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
gi|428263103|gb|AFZ29049.1| ATP-dependent Clp protease proteolytic subunit ClpP [Gloeocapsa sp.
PCC 7428]
Length = 230
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 68 STEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAI 123
++ HS +I S N ++P V+ G D+ S L R RIIF+G ++ VA +
Sbjct: 12 TSSHSLEINSLGASN--IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTQVDDTVADSIV 69
Query: 124 SQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 183
+QL+ L D + DI +Y+N PGGS+ + +AIYD M I+ V T+CFG+AAS A +LA
Sbjct: 70 AQLLFLDAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQIRCDVATICFGLAASMGAFLLA 129
Query: 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
G G R ++PN+RIM++QP G+ G D++ Q E + + L HT
Sbjct: 130 AGAHGKRMSLPNSRIMIHQPLGGAQGQAVDIEIQAKEILYLKRKLNEILAYHT 182
>gi|363890989|ref|ZP_09318283.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium CM5]
gi|363893165|ref|ZP_09320304.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium CM2]
gi|363895295|ref|ZP_09322293.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium ACC19a]
gi|402838212|ref|ZP_10886724.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacteriaceae bacterium OBRC8]
gi|361957733|gb|EHL11038.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium ACC19a]
gi|361961689|gb|EHL14872.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium CM2]
gi|361962756|gb|EHL15865.1| ATP-dependent Clp protease proteolytic subunit [Eubacteriaceae
bacterium CM5]
gi|402273716|gb|EJU22911.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacteriaceae bacterium OBRC8]
Length = 200
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGDEVNDQTASLVVAQLLFLESEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D + +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D+K
Sbjct: 79 DTIQYIKPDVSTICIGMAASMGAFLLNCGTKGKRFALPNSEIMIHQPLGGTRGQATDIK 137
>gi|119774361|ref|YP_927101.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
amazonensis SB2B]
gi|171704645|sp|A1S4X5.1|CLPP_SHEAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|119766861|gb|ABL99431.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
amazonensis SB2B]
Length = 202
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ + +A ++QL+ L + + D +I +Y+N PGGS+ + +AIY
Sbjct: 28 DIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESENPDKEIYLYINSPGGSVTAGMAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV TVC G A S A +LAGGEKGMR+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPKVSTVCIGQACSMGAFLLAGGEKGMRHCLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + +H L HT
Sbjct: 148 HAQEILGIKHKLNQMLSHHT 167
>gi|449083712|gb|AGE84038.1| ClpP, partial [Listeria monocytogenes]
Length = 139
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 80/116 (68%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S L ++RII +G I+ VA +SQL+ L D + DI +Y+N PGGSI + +AIYD M
Sbjct: 3 SRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTM 62
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
+IKPKV T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G +++
Sbjct: 63 QFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIE 118
>gi|421849601|ref|ZP_16282579.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus
NBRC 101655]
gi|421853139|ref|ZP_16285818.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371459662|dbj|GAB27782.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus
NBRC 101655]
gi|371478599|dbj|GAB31021.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 201
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 87/141 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + RIIF+ P+ VA +QL+ L +++ + +I Y+N PGG + + LAI
Sbjct: 13 FDIYSRLLQERIIFLTGPVYDQVASLISAQLLYLESVNPNKEISFYINSPGGVVSAGLAI 72
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +I+ V TVC G AAS +++LAGGEKG R+A+PNAR+M++QP G+ G D++
Sbjct: 73 YDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRRFALPNARVMVHQPSGGAQGQASDIE 132
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E +I R HT
Sbjct: 133 IQAREILIIRQKLNEIYREHT 153
>gi|302337810|ref|YP_003803016.1| ATP-dependent Clp protease proteolytic subunit ClpP [Spirochaeta
smaragdinae DSM 11293]
gi|301634995|gb|ADK80422.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Spirochaeta
smaragdinae DSM 11293]
Length = 205
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+F+ IN A ++QL+ L ++D + DI +
Sbjct: 8 LVPYVVEQTGVGERSYDIFSRLLKDRIVFLDGEINDATADLVVAQLLFLESLDPERDISL 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD + +IKP V T+C G AAS AA++L G G R+A+P++RI++
Sbjct: 68 YINSPGGSVTAGLAIYDTIQYIKPDVQTICMGQAASMAALMLTCGSTGKRFALPSSRILI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D+ Q E V + +++ + HT
Sbjct: 128 HQPWGGAQGQAVDIGIQAKEIVRLKQLTIRYFSQHT 163
>gi|304407273|ref|ZP_07388926.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
gi|304343714|gb|EFM09555.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
Length = 195
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N +VA I+QL+ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGTGVNDIVANSIIAQLLFLAADDPEKDISLYINSPGGSITAGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G G RYA+PN+ +M++QP G+ G D++
Sbjct: 81 DTMQFIKPDVSTICVGMAASMGAFLLTAGAIGKRYALPNSEVMIHQPLGGAEGQASDIE 139
>gi|218295537|ref|ZP_03496350.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
aquaticus Y51MC23]
gi|218244169|gb|EED10695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
aquaticus Y51MC23]
Length = 194
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 92/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI++ VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAQVANTIVAQLLFLDAQNPNQEIRLYINSPGGEVDAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P++++M++QP G+ G D+
Sbjct: 78 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHSKVMIHQPWGGARGTASDIAI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + ++ + L HT
Sbjct: 138 QAQEILKAKKLLNEILAKHT 157
>gi|94987236|ref|YP_595169.1| protease subunit of ATP-dependent Clp proteases [Lawsonia
intracellularis PHE/MN1-00]
gi|442556076|ref|YP_007365901.1| ATP-dependent Clp protease, proteolytic subunit [Lawsonia
intracellularis N343]
gi|116243147|sp|Q1MQ79.1|CLPP_LAWIP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|94731485|emb|CAJ54848.1| Protease subunit of ATP-dependent Clp proteases [Lawsonia
intracellularis PHE/MN1-00]
gi|441493523|gb|AGC50217.1| ATP-dependent Clp protease, proteolytic subunit [Lawsonia
intracellularis N343]
Length = 209
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ +G +N VA +QL+ L + D + +I +Y+N PGGS+ + LAIY
Sbjct: 24 DIYSRLLKDRIVLLGTEVNDQVASLICAQLLFLESQDPEKEIYLYINSPGGSVTAGLAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++I P V TVC G AAS A++LA GEK MRYA+PN+++M++QP G G D+
Sbjct: 84 DTMNYITPNVATVCMGRAASMGALLLAAGEKNMRYALPNSQVMIHQPLGGYQGQATDIDI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L+ T
Sbjct: 144 HAREILRMRQRLNEILMEQT 163
>gi|152977369|ref|YP_001376886.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
cytotoxicus NVH 391-98]
gi|152026121|gb|ABS23891.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cytotoxicus NVH 391-98]
Length = 193
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPNVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|323484460|ref|ZP_08089826.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
symbiosum WAL-14163]
gi|323692476|ref|ZP_08106710.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
symbiosum WAL-14673]
gi|355628696|ref|ZP_09049918.1| ATP-dependent Clp protease proteolytic subunit [Clostridium sp.
7_3_54FAA]
gi|323402238|gb|EGA94570.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
symbiosum WAL-14163]
gi|323503473|gb|EGB19301.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
symbiosum WAL-14673]
gi|354819586|gb|EHF04027.1| ATP-dependent Clp protease proteolytic subunit [Clostridium sp.
7_3_54FAA]
Length = 193
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ + A +SQL+ L + D + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIFSRLLKERIIFLGEEVTDTSAGLIVSQLLFLESEDPNKDIHLYINSPGGSVSAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IK V T+CFG+AAS A +LAGG KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTMNYIKCDVSTICFGMAASMGAFLLAGGAKGKRFALPNAEVMIHQPSGGAQGQATEIQI 138
Query: 217 QVNEAVISRHVSLSFLL 233
V E ++ L+ +L
Sbjct: 139 -VAEKILQTKKKLNEIL 154
>gi|195941431|ref|ZP_03086813.1| ATP-dependent Clp protease proteolytic component (clpP-1) [Borrelia
burgdorferi 80a]
gi|218249848|ref|YP_002375116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi ZS7]
gi|223889055|ref|ZP_03623645.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 64b]
gi|224532428|ref|ZP_03673055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi WI91-23]
gi|225549547|ref|ZP_03770513.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 118a]
gi|226321916|ref|ZP_03797442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi Bol26]
gi|365992374|ref|NP_212745.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi B31]
gi|387826247|ref|YP_005805700.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi JD1]
gi|387827511|ref|YP_005806793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi N40]
gi|384872324|sp|O51556.2|CLPP1_BORBU RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|218165036|gb|ACK75097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi ZS7]
gi|223885481|gb|EEF56581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 64b]
gi|224512638|gb|EEF83012.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi WI91-23]
gi|225369824|gb|EEG99271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 118a]
gi|226233105|gb|EEH31858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi Bol26]
gi|312147788|gb|ADQ30447.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi JD1]
gi|312149314|gb|ADQ29385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi N40]
gi|356609378|gb|AAC66964.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi B31]
Length = 194
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D DI +
Sbjct: 4 LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LAGG KG R ++ +RIM+
Sbjct: 64 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 124 HQPWGGISGQASDINIQANE 143
>gi|427707070|ref|YP_007049447.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc sp. PCC
7107]
gi|427359575|gb|AFY42297.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc sp. PCC
7107]
Length = 201
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ I+S +A ++Q++ L D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQIDSNLANLIVAQMLFLDAEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + FL HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDFLAEHT 156
>gi|406967388|gb|EKD92473.1| hypothetical protein ACD_28C00422G0002 [uncultured bacterium]
Length = 230
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 6/131 (4%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G IN VA I+QL+ L + DI+MY+ PGG + + LAIY
Sbjct: 48 DIYSRLLKDRIIFLGSAINDQVANSIIAQLLFLEKDNPKKDIVMYIQSPGGHVTAGLAIY 107
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+P V TVC G+AAS A++L G KG R+A+PNA IM++QP G G D++
Sbjct: 108 DTMQYIRPDVSTVCIGMAASMGAVLLTAGAKGKRFALPNAEIMIHQPLGGVEGQASDIE- 166
Query: 217 QVNEAVISRHV 227
+ +RH+
Sbjct: 167 -----IHARHI 172
>gi|332707230|ref|ZP_08427283.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
gi|332353964|gb|EGJ33451.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moorea
producens 3L]
Length = 200
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L D++ DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSDLANLVVAQLLFLEADDQEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M+ + P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNQVAPDVCTICVGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + ++L HT
Sbjct: 121 HQPLGGAQGQASDIEIQAKEILYHKQQLNNYLAEHT 156
>gi|338706467|ref|YP_004673235.1| S14 family endopeptidase ClpP [Treponema paraluiscuniculi Cuniculi
A]
gi|335344528|gb|AEH40444.1| S14 family endopeptidase ClpP [Treponema paraluiscuniculi Cuniculi
A]
Length = 203
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+ I VA ++QL+ L + + D DI +
Sbjct: 8 LVPYVIEQSGGGERSYDIFSRLLKDRIIFVDGEITDAVADLVVAQLLFLESQNPDKDISL 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG++ + LA+YD M I P+V T+C G A+S AA++LAGG G R+A+P++R+M+
Sbjct: 68 YINSPGGAVTAGLAVYDTMQHICPEVQTICLGQASSMAAVLLAGGAPGKRFALPSSRVMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G DV Q E + + +++++ LHT
Sbjct: 128 HQPWGGVQGQASDVCIQAQEILRLKTLTIAYFALHT 163
>gi|91783520|ref|YP_558726.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
xenovorans LB400]
gi|187923896|ref|YP_001895538.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
phytofirmans PsJN]
gi|385209690|ref|ZP_10036558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. Ch1-1]
gi|116243110|sp|Q13Z15.1|CLPP2_BURXL RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|91687474|gb|ABE30674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
xenovorans LB400]
gi|187715090|gb|ACD16314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phytofirmans PsJN]
gi|385182028|gb|EIF31304.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. Ch1-1]
Length = 217
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 5/155 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++Q++ L + + D DI
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDISF 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+A+PN+R+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
+QP G+ G D++ Q E + + L+ LL H
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKE-RLNHLLAH 179
>gi|166363928|ref|YP_001656201.1| ATP-dependent protease [Microcystis aeruginosa NIES-843]
gi|425467657|ref|ZP_18846936.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9809]
gi|166086301|dbj|BAG01009.1| ATP-dependent protease [Microcystis aeruginosa NIES-843]
gi|389829532|emb|CCI29086.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9809]
Length = 200
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIETTGRGERAFDIYSRLLRERIVFLGQEVTSDLANLIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G+ G R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGKPGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNEHLASHT 156
>gi|297569273|ref|YP_003690617.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfurivibrio alkaliphilus AHT2]
gi|296925188|gb|ADH85998.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfurivibrio alkaliphilus AHT2]
Length = 200
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L + RIIF+G +N VA I+Q++ L D D DI
Sbjct: 3 LIPFVIEQTPRGERSYDIYSRLLKERIIFLGTGVNDDVANVIIAQMLFLEADDPDKDITF 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + LAIYD M +IK V T+C G AAS A++LA G +G RYA+PN+RI++
Sbjct: 63 YINSPGGVVTAGLAIYDTMRYIKCDVATLCLGQAASMGAVLLAAGTEGKRYALPNSRILI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ E + R L HT
Sbjct: 123 HQPMGGYQGQASDIDIHAKEILRMRQDLNRILASHT 158
>gi|124007705|ref|ZP_01692408.1| Clp protease [Microscilla marina ATCC 23134]
gi|123986827|gb|EAY26599.1| Clp protease [Microscilla marina ATCC 23134]
Length = 232
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 90/142 (63%)
Query: 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA 154
+D+ S L +RIIF+G I+ +VA +QL+ L ++D DIL+Y+N PGGS+Y+ L
Sbjct: 54 EIDVFSRLIMDRIIFLGMGIDDLVANVVTAQLLFLESVDSKKDILVYINSPGGSVYAGLG 113
Query: 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
IYD M ++ P V T+C G+AAS A++LAGG + R A+ ++R+M++QP G+ G D+
Sbjct: 114 IYDTMQYVNPDVVTICTGLAASMGAVLLAGGAENKRSALEHSRVMIHQPLGGAQGQASDI 173
Query: 215 KRQVNEAVISRHVSLSFLLLHT 236
+ + +I +H L H+
Sbjct: 174 EITAKQILILKHELYEILAKHS 195
>gi|373114189|ref|ZP_09528406.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
gi|419842321|ref|ZP_14365671.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Fusobacterium necrophorum subsp. funduliforme ATCC
51357]
gi|421501620|ref|ZP_15948579.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Fusobacterium necrophorum subsp. funduliforme Fnf 1007]
gi|371653076|gb|EHO18482.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
gi|386902230|gb|EIJ67072.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Fusobacterium necrophorum subsp. funduliforme ATCC
51357]
gi|402265772|gb|EJU15232.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Fusobacterium necrophorum subsp. funduliforme Fnf 1007]
Length = 195
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 78/113 (69%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R+RIIF+G +N VA ++QL+ L D DI++Y+N PGGS+ + LAI
Sbjct: 17 FDIFSRLLRDRIIFLGTEVNDQVAASLVAQLLYLEAEDPTKDIILYINSPGGSVSAGLAI 76
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG 208
YD M+++KP + TVC G AAS A +LA G KG R+A+ N+RIM++QP G+G
Sbjct: 77 YDTMNYVKPDIQTVCIGQAASMGAFLLAAGTKGKRFALENSRIMIHQPLGGTG 129
>gi|408372151|ref|ZP_11169898.1| ATP-dependent Clp protease proteolytic subunit [Galbibacter sp.
ck-I2-15]
gi|407742416|gb|EKF54016.1| ATP-dependent Clp protease proteolytic subunit [Galbibacter sp.
ck-I2-15]
Length = 224
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 82/125 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G IN VA +QL+ L + D DI +Y+N PGGS+Y+ L I
Sbjct: 49 MDVFSRLMMDRIIFMGTAINDQVANIIQAQLLFLESTDASKDIQIYINSPGGSVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS A++L GEKG R A+P++R+M++QP G+ G D++
Sbjct: 109 YDTMQYIKPDVATICTGMAASMGAVLLCAGEKGKRSALPHSRVMIHQPLGGAQGQASDIE 168
Query: 216 RQVNE 220
E
Sbjct: 169 ITARE 173
>gi|372222076|ref|ZP_09500497.1| ATP-dependent Clp protease proteolytic subunit 2 [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 226
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 88/145 (60%), Gaps = 9/145 (6%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L +RIIF+G IN VA +QL+ L + D + DI +Y+N PGG +Y+ L I
Sbjct: 49 FDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESTDANKDISIYINSPGGGVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS A++L GE G R A+P++RIM++QP SG+ G D++
Sbjct: 109 YDTMQFIKPDVATICTGIAASMGAVLLCAGENGKRSALPHSRIMIHQPLSGAQGQASDIE 168
Query: 216 RQVNEA---------VISRHVSLSF 231
E +I++H +F
Sbjct: 169 IAAKEVLKIKDELYDIIAKHSGQTF 193
>gi|187928950|ref|YP_001899437.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
12J]
gi|241663134|ref|YP_002981494.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
12D]
gi|309781948|ref|ZP_07676679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
5_7_47FAA]
gi|404377636|ref|ZP_10982736.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia sp.
5_2_56FAA]
gi|187725840|gb|ACD27005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
pickettii 12J]
gi|240865161|gb|ACS62822.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
pickettii 12D]
gi|308919292|gb|EFP64958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
5_7_47FAA]
gi|348611501|gb|EGY61146.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia sp.
5_2_56FAA]
Length = 215
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R+IF+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ S LA+YD M +IKP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSSGLAMYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRLALPNSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRE 170
>gi|312796430|ref|YP_004029352.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
[Burkholderia rhizoxinica HKI 454]
gi|312168205|emb|CBW75208.1| ATP-dependent endopeptidase clp proteolytic subunit clpP (EC
3.4.21.92) [Burkholderia rhizoxinica HKI 454]
Length = 238
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 47 LVPMVVETSGRGERAYDIYSRLLKERLVFLVGEVNDQAANLVVAQLLFLESENPDKDISL 106
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R A+PNAR+M+
Sbjct: 107 YINSPGGSVSAGMAIYDTMQFIKPDVTTLCMGLAASMGAFLLAAGAKGKRIALPNARVMI 166
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + L HT
Sbjct: 167 HQPLGGARGQASDIEIQAREILFLKERLNNLLAQHT 202
>gi|15639498|ref|NP_218948.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025737|ref|YP_001933509.1| ATP-dependent Clp protease proteolytic subunit [Treponema pallidum
subsp. pallidum SS14]
gi|378973013|ref|YP_005221617.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378974080|ref|YP_005222686.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378975141|ref|YP_005223749.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pallidum
DAL-1]
gi|378981989|ref|YP_005230294.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pertenue
str. CDC2]
gi|384422018|ref|YP_005631377.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
pallidum subsp. pallidum str. Chicago]
gi|408502378|ref|YP_006869822.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|6225161|sp|O83520.1|CLPP1_TREPA RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|3322799|gb|AAC65495.1| ATP-dependent Clp protease proteolytic component (clpP-1)
[Treponema pallidum subsp. pallidum str. Nichols]
gi|189018312|gb|ACD70930.1| ATP-dependent Clp protease proteolytic component [Treponema
pallidum subsp. pallidum SS14]
gi|291059884|gb|ADD72619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Treponema
pallidum subsp. pallidum str. Chicago]
gi|374677336|gb|AEZ57629.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678406|gb|AEZ58698.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679475|gb|AEZ59766.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|374680539|gb|AEZ60829.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pallidum
DAL-1]
gi|408475741|gb|AFU66506.1| S14 family endopeptidase ClpP [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 203
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+ I VA ++QL+ L + + D DI +
Sbjct: 8 LVPYVIEQSGGGERSYDIFSRLLKDRIIFVDGEITDAVADLVVAQLLFLESQNPDKDISL 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG++ + LA+YD M I P+V T+C G A+S AA++LAGG G R+A+P++R+M+
Sbjct: 68 YINSPGGAVTAGLAVYDTMQHICPEVQTICLGQASSMAAVLLAGGAPGKRFALPSSRVMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G DV Q E + + +++++ LHT
Sbjct: 128 HQPWGGVQGQASDVCIQAQEILRLKTLTIAYFALHT 163
>gi|160947717|ref|ZP_02094884.1| hypothetical protein PEPMIC_01652 [Parvimonas micra ATCC 33270]
gi|158446851|gb|EDP23846.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Parvimonas micra ATCC 33270]
Length = 192
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ +N +A ++QL+ L + D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFLSGEVNDQMADLIVAQLLFLESEDPKKDIQIYINSPGGSVSAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A +L G KG R+A+PNA IM++QP G+ G ED+K
Sbjct: 79 DTMQYIKPDVSTICIGRAASMGAFLLTSGAKGKRFALPNADIMIHQPLGGAQGQAEDIKI 138
Query: 217 QVNEAVISR 225
Q + + R
Sbjct: 139 QAQKILQVR 147
>gi|323140768|ref|ZP_08075687.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414786|gb|EFY05586.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Phascolarctobacterium succinatutens YIT 12067]
Length = 197
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+ PI+ +A I+QL+ L + D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIVFVTGPIDDNMANVVIAQLLFLESEDPDKDIHLYINSPGGSVSAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A+++LA G G R+A+P +R+M++QP G+ G +++
Sbjct: 79 DTMQYIKPDVSTICMGMAASMASVLLAAGAPGKRFALPYSRVMIHQPLGGAQGQATEIEI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 139 HAREILRIREEMNQVLAKHT 158
>gi|119476204|ref|ZP_01616556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2143]
gi|119450831|gb|EAW32065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2143]
Length = 206
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 4/163 (2%)
Query: 81 DNPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDA 136
+N L+P V+ T G D+ S L + R+IF+ + +A ++QL+ L + + D
Sbjct: 7 NNLGLVPMVVEQTAKGERSYDIYSRLLKERVIFMVGQVEDNMANLIVAQLLFLESENPDK 66
Query: 137 DILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA 196
DI +Y+N PGGS+ + L+IYD M +I+P V T+C G AAS A +LAGG KG R+ +PNA
Sbjct: 67 DIHLYINSPGGSVTAGLSIYDTMQFIRPDVSTMCIGQAASMGAFLLAGGAKGKRFILPNA 126
Query: 197 RIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
R M++QP G+ G D+ Q E +I R + HT ND
Sbjct: 127 RTMIHQPSGGAQGQATDIDIQAREILIIRERLNQLMAEHTGND 169
>gi|216264918|ref|ZP_03436910.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 156a]
gi|225548921|ref|ZP_03769898.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 94a]
gi|226321180|ref|ZP_03796719.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 29805]
gi|215981391|gb|EEC22198.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 156a]
gi|225370524|gb|EEG99960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 94a]
gi|226233413|gb|EEH32155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
burgdorferi 29805]
Length = 194
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D DI +
Sbjct: 4 LIPTVIENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSSKDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LAGG KG R ++ +RIM+
Sbjct: 64 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGAKGKRESLTYSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 124 HQPWGGISGQASDINIQANE 143
>gi|124013817|sp|Q2S2L8.2|CLPP1_SALRD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
Length = 233
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 84/143 (58%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+FIG PIN +A ++QL+ L + I +Y+N PGG IYS L +Y
Sbjct: 37 DIFSRLLKERIVFIGTPINDQIANLTVAQLLYLESEGSSQPINIYINSPGGVIYSGLGVY 96
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ + T C G+AAS +++LAGGE G R +PN+R+M++QP G+ G D++
Sbjct: 97 DTMQYVEAPISTTCVGLAASMGSVLLAGGEDGQRACLPNSRVMMHQPMGGTEGQASDIEI 156
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
Q E + L HT D
Sbjct: 157 QAKEMAWLKKRLYQILSFHTGKD 179
>gi|374585518|ref|ZP_09658610.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptonema
illini DSM 21528]
gi|373874379|gb|EHQ06373.1| ATP-dependent Clp protease proteolytic subunit ClpP [Leptonema
illini DSM 21528]
Length = 201
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 80/128 (62%)
Query: 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA 154
P D+ S L R+RI+FIG PIN A I+QL+ L D DI +Y+N PGG I S LA
Sbjct: 17 PYDVYSRLLRDRIVFIGHPINDEYANSIIAQLLFLEAEDPQNDIYIYINSPGGYISSGLA 76
Query: 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
+YD M +I+P + T+C G A++ +++L G KG R A+PNARI ++QP G G D+
Sbjct: 77 VYDTMQYIRPDIRTICIGQASNICSLLLTAGTKGKRSALPNARIAMHQPLGGVTGQSRDI 136
Query: 215 KRQVNEAV 222
+ Q E +
Sbjct: 137 ELQAQELI 144
>gi|253577702|ref|ZP_04855005.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
gi|251842907|gb|EES70953.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
Length = 196
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 84/131 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G I+ VA ++Q++ LA D + DI Y+N PGGS + AIY
Sbjct: 20 DIYSRLLKDRIVFLGSAIDDQVANSIMAQMLFLAAEDPEKDIYFYINSPGGSTSAGFAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS AAI+L G KG R+A+PN+ IM++QP G+ G D+
Sbjct: 80 DTMQYVKPDVQTICSGMAASFAAILLMAGAKGKRFALPNSEIMIHQPHGGAQGQASDIAI 139
Query: 217 QVNEAVISRHV 227
N + +R V
Sbjct: 140 SANRILRTRAV 150
>gi|237653230|ref|YP_002889544.1| ATP-dependent Clp protease proteolytic subunit [Thauera sp. MZ1T]
gi|237624477|gb|ACR01167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thauera sp.
MZ1T]
Length = 212
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ P+N + A ++QL+ L + + D DI
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESENPDKDIYF 78
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G AAS A +LA GEKG R+ +PN+R+M+
Sbjct: 79 YINSPGGSVTAGMAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFILPNSRVMI 138
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ E + R L HT
Sbjct: 139 HQPLGGFQGQASDIEIHAREILYLRSRLNDMLSKHT 174
>gi|429756330|ref|ZP_19288927.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 324 str. F0483]
gi|429171448|gb|EKY13068.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 324 str. F0483]
Length = 219
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 87/138 (63%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G +N VA +QL+ L ++D DI +Y+
Sbjct: 31 PYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQLLFLESVDSAKDIQIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+Y+ L IYD M +IKP V T+C G+AAS AA++L G +G R A+P++R+M++Q
Sbjct: 91 NSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGTEGKRSALPHSRVMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNE 220
P G+ G D++ + E
Sbjct: 151 PSGGAQGVASDMEINLKE 168
>gi|390442096|ref|ZP_10230114.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis sp. T1-4]
gi|425439844|ref|ZP_18820158.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9717]
gi|425471167|ref|ZP_18850027.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9701]
gi|389719848|emb|CCH96383.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9717]
gi|389834540|emb|CCI34240.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis sp. T1-4]
gi|389882956|emb|CCI36590.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9701]
Length = 200
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIETTGRGERAFDIYSRLLRERIVFLGQEVTSDLANLIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G+ G R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGKPGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNQHLASHT 156
>gi|315224014|ref|ZP_07865855.1| ATP-dependent Clp protease proteolytic subunit [Capnocytophaga
ochracea F0287]
gi|420159015|ref|ZP_14665825.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Capnocytophaga ochracea str. Holt 25]
gi|314945985|gb|EFS97993.1| ATP-dependent Clp protease proteolytic subunit [Capnocytophaga
ochracea F0287]
gi|394762882|gb|EJF45057.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Capnocytophaga ochracea str. Holt 25]
Length = 219
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 87/138 (63%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G +N VA +QL+ L ++D DI +Y+
Sbjct: 31 PYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQLLFLESVDSAKDIQIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+Y+ L IYD M +IKP V T+C G+AAS AA++L G +G R A+P++R+M++Q
Sbjct: 91 NSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGTEGKRSALPHSRVMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNE 220
P G+ G D++ + E
Sbjct: 151 PSGGAQGVASDMEINLKE 168
>gi|85818165|gb|EAQ39325.1| ATP-dependent Clp protease proteolytic subunit [Dokdonia
donghaensis MED134]
Length = 224
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 87/144 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L +RIIF+G IN VA +QL+ L + D + DI +Y+N PGGS+Y+ L I
Sbjct: 49 FDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESTDANKDIQIYINSPGGSVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS A++L GEKG R +P++R+M++QP G+ G D++
Sbjct: 109 YDTMQFIKPDVATICTGMAASMGAVLLCAGEKGKRSGLPHSRVMIHQPMGGAQGQASDIE 168
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
E + + + H+ D
Sbjct: 169 ITAKEILTLKKELYDIIAKHSGQD 192
>gi|410666834|ref|YP_006919205.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermacetogenium phaeum DSM 12270]
gi|409104581|gb|AFV10706.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermacetogenium phaeum DSM 12270]
Length = 201
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+Q++ L D + DI +Y+N PGGSI + LAI+
Sbjct: 23 DIYSRLLKDRIIFLGTPIDDSVANIIIAQMLFLEAEDPEKDIYLYINSPGGSITAGLAIF 82
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M ++KP V T+C G+AAS A +LA G K R+A PN+ IM++QP G+ G DV+
Sbjct: 83 DTMRYVKPDVSTICVGMAASMGAFLLAAGAKKKRFATPNSEIMIHQPMGGAQGQATDVE 141
>gi|425449262|ref|ZP_18829103.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 7941]
gi|440753940|ref|ZP_20933142.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa TAIHU98]
gi|389764138|emb|CCI09472.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 7941]
gi|440174146|gb|ELP53515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa TAIHU98]
Length = 200
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIETTGRGERAFDIYSRLLRERIVFLGQEVTSDLANLIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G+ G R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGKPGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNQHLASHT 156
>gi|187776850|ref|ZP_02993323.1| hypothetical protein CLOSPO_00389 [Clostridium sporogenes ATCC
15579]
gi|424826849|ref|ZP_18251700.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
sporogenes PA 3679]
gi|187775509|gb|EDU39311.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium sporogenes ATCC 15579]
gi|365980550|gb|EHN16576.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
sporogenes PA 3679]
Length = 194
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 77/118 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + + +N A ++QL+ L D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIYLYINSPGGSITSGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDI 136
>gi|320161063|ref|YP_004174287.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
thermophila UNI-1]
gi|319994916|dbj|BAJ63687.1| ATP-dependent Clp protease proteolytic subunit [Anaerolinea
thermophila UNI-1]
Length = 201
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 81/124 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S+L + RI+F+G PI+ +A ++QL+ L+ D + DI MY+NCPGG IY+ +AIY
Sbjct: 25 DIYSLLLKERIVFVGTPIDDQIANLIVAQLLFLSREDPEKDIQMYINCPGGLIYAGMAIY 84
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M I ++ TV GV AS ++LA G KG RYA+P+A I ++QP G+ G D++
Sbjct: 85 DTMQMIPNRISTVAVGVTASFGTVLLAAGSKGQRYALPHATIHMHQPLGGAQGQASDIEI 144
Query: 217 QVNE 220
Q E
Sbjct: 145 QARE 148
>gi|381181306|ref|ZP_09890140.1| ATP-dependent Clp protease proteolytic subunit ClpP [Treponema
saccharophilum DSM 2985]
gi|380766526|gb|EIC00531.1| ATP-dependent Clp protease proteolytic subunit ClpP [Treponema
saccharophilum DSM 2985]
Length = 209
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 91/144 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFI IN + A ++Q++ L + + + DI +Y+N PGGS+ + LAIY
Sbjct: 24 DIFSRLLKDRIIFIDGEINDLNADLVVAQILFLESENPEKDISIYINSPGGSVTAGLAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K + T+C G AAS AI+LAGG KG RYA+P++R+M++QP G G D+
Sbjct: 84 DTMQYVKCDIQTICMGQAASMGAILLAGGTKGKRYALPSSRVMIHQPFGGVQGQESDIAI 143
Query: 217 QVNEAVISRHVSLSFLLLHTLNDS 240
Q E + + +S+ +L T D
Sbjct: 144 QAKEILRLKSLSIKYLAEKTGKDE 167
>gi|159903385|ref|YP_001550729.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9211]
gi|159888561|gb|ABX08775.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9211]
Length = 196
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ + A R ++QL+ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTNDSANRIVAQLLFLEAEDPEKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D + +KP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTIEHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLKHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|381187312|ref|ZP_09894877.1| ATP-dependent Clp protease proteolytic subunit [Flavobacterium
frigoris PS1]
gi|379650922|gb|EIA09492.1| ATP-dependent Clp protease proteolytic subunit [Flavobacterium
frigoris PS1]
Length = 224
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 106/195 (54%), Gaps = 20/195 (10%)
Query: 64 KDFCSTEHS-----YKIISG----KNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPI 114
K F + +H Y I G KN P ++ LD+ S L +RIIF+G I
Sbjct: 8 KKFATKDHGVNSMYYDKIVGAMTPKNMTPYIIEERQLNISQLDVFSRLMMDRIIFLGTGI 67
Query: 115 NSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174
+ +A +QL+ L + D DI +YLN PGGS+Y+ L IYD M +IKP V T+C G+A
Sbjct: 68 DDQIANIVQAQLLFLESADASKDIQIYLNSPGGSVYAGLGIYDTMQYIKPDVATICTGMA 127
Query: 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE---------AVISR 225
AS A++L G G R A+P++R+M++QP G+ G D++ + E +IS+
Sbjct: 128 ASMGAVLLCAGAPGKRSALPHSRVMIHQPSGGAQGVATDMEINLREMLKLKDELYKIISQ 187
Query: 226 HVSLSFLLLHTLNDS 240
H +F +H NDS
Sbjct: 188 HSGQTFEKVH--NDS 200
>gi|303229413|ref|ZP_07316203.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
atypica ACS-134-V-Col7a]
gi|303231336|ref|ZP_07318070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
atypica ACS-049-V-Sch6]
gi|401680587|ref|ZP_10812502.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella sp. ACP1]
gi|429760069|ref|ZP_19292559.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella atypica KON]
gi|302513932|gb|EFL55940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
atypica ACS-049-V-Sch6]
gi|302515949|gb|EFL57901.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
atypica ACS-134-V-Col7a]
gi|400218495|gb|EJO49375.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella sp. ACP1]
gi|429178474|gb|EKY19752.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Veillonella atypica KON]
Length = 197
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 83/130 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA I+Q++ L D D DI +Y+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGGPIDDNVANAVIAQMLFLEAEDPDKDIHLYINSPGGVVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++L G KG R+A+P+AR+M++QP G G +++
Sbjct: 78 DTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRFALPHARVMIHQPLGGVQGQASEIEI 137
Query: 217 QVNEAVISRH 226
E + R
Sbjct: 138 HAREILRMRE 147
>gi|421745790|ref|ZP_16183628.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
HPC(L)]
gi|409775704|gb|EKN57162.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
HPC(L)]
Length = 216
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A I+QL+ L + + D D+ +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERLVFMVGEVNDQTANLVIAQLLFLESENPDKDVFL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LA+YD M +IKP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAVYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRLALPNSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRE 170
>gi|383482277|ref|YP_005391191.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
montanensis str. OSU 85-930]
gi|378934631|gb|AFC73132.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
montanensis str. OSU 85-930]
Length = 201
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAANPKKDIYMYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 138
Query: 217 QVNEAV 222
E +
Sbjct: 139 HAQETL 144
>gi|256820835|ref|YP_003142114.1| endopeptidase Clp [Capnocytophaga ochracea DSM 7271]
gi|429746664|ref|ZP_19280000.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 380 str. F0488]
gi|256582418|gb|ACU93553.1| Endopeptidase Clp [Capnocytophaga ochracea DSM 7271]
gi|429165559|gb|EKY07603.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 380 str. F0488]
Length = 219
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 87/138 (63%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G +N VA +QL+ L ++D DI +Y+
Sbjct: 31 PYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQLLFLESVDSAKDIQIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+Y+ L IYD M +IKP V T+C G+AAS AA++L G +G R A+P++R+M++Q
Sbjct: 91 NSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGTEGKRSALPHSRVMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNE 220
P G+ G D++ + E
Sbjct: 151 PSGGAQGVASDMEINLKE 168
>gi|340751561|ref|ZP_08688371.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
mortiferum ATCC 9817]
gi|229420526|gb|EEO35573.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
mortiferum ATCC 9817]
Length = 191
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 84/124 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++QL+ L D + DI+MY+N PGG + + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGTEIDDNVANAIVAQLLFLEAEDPEKDIIMYINSPGGVVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V TVC G AAS A++L+ G KG R+A+ ++RIM++QP G+ G D++
Sbjct: 78 DTMNYIKPDVQTVCIGQAASMGALLLSAGAKGKRFALEHSRIMIHQPLGGARGQATDIEI 137
Query: 217 QVNE 220
Q E
Sbjct: 138 QAKE 141
>gi|154249786|ref|YP_001410611.1| ATP-dependent Clp protease proteolytic subunit [Fervidobacterium
nodosum Rt17-B1]
gi|154153722|gb|ABS60954.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Fervidobacterium nodosum Rt17-B1]
Length = 206
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%), Gaps = 11/140 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++QL+ L + D DI +Y+N PGG + + LAIY
Sbjct: 30 DIYSRLLKDRIIFLGSAIDDHVANLVVAQLLFLEAENPDKDIQLYINSPGGLVTAGLAIY 89
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D M ++K V T+C G AAS A++LA G KG R+A+PN+RIM++QP G+ G +DV
Sbjct: 90 DTMQYVKCDVATICVGQAASMGAVLLAAGAKGKRFALPNSRIMIHQPLGGAEGSAKDVEI 149
Query: 215 --------KRQVNEAVISRH 226
KR +NE ++S+H
Sbjct: 150 LTKELLRIKRIINE-ILSKH 168
>gi|219684233|ref|ZP_03539177.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
garinii PBr]
gi|219685103|ref|ZP_03539923.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
garinii Far04]
gi|219672222|gb|EED29275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
garinii PBr]
gi|219673199|gb|EED30218.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
garinii Far04]
Length = 197
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D + DI +
Sbjct: 7 LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIYL 66
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LAGG +G R ++ +RIM+
Sbjct: 67 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGARGKRESLAYSRIMI 126
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 127 HQPWGGISGQASDINIQANE 146
>gi|261855007|ref|YP_003262290.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Halothiobacillus neapolitanus c2]
gi|261835476|gb|ACX95243.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Halothiobacillus neapolitanus c2]
Length = 210
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 84/130 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R++F+ PI +A ++QL+ L + + D DI +Y+N PGG + + ++IY
Sbjct: 35 DIYSRLLKERVVFVVGPIEDHMANLIVAQLLFLESENPDKDIHLYINSPGGVVTAGMSIY 94
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +I+L+GGE G R+A+PN+R+M++QP G G D+K
Sbjct: 95 DTMQFIKPHVSTLCIGQAASMGSILLSGGEPGKRFALPNSRVMIHQPLGGFQGQASDIKI 154
Query: 217 QVNEAVISRH 226
E + RH
Sbjct: 155 HAEEIIKLRH 164
>gi|15616126|ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
C-125]
gi|11386690|sp|Q9K709.1|CLPP1_BACHD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|10176188|dbj|BAB07283.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans
C-125]
Length = 194
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGTRGQASDIE 137
>gi|386723275|ref|YP_006189601.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus K02]
gi|384090400|gb|AFH61836.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus K02]
Length = 200
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 82/131 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA I+QL+ L+ D D DI +Y+N PGGS + L I
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDTVANSIIAQLLLLSAEDPDKDIHLYINSPGGSTTAGLGIL 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS AA++L G G R+A+P+A +M++QP GS G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMAAVLLVAGAPGKRFALPHAEVMIHQPHGGSQGQASDIHI 138
Query: 217 QVNEAVISRHV 227
V +R +
Sbjct: 139 HAQRIVQTREL 149
>gi|225573066|ref|ZP_03781821.1| hypothetical protein RUMHYD_01257 [Blautia hydrogenotrophica DSM
10507]
gi|225039572|gb|EEG49818.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Blautia
hydrogenotrophica DSM 10507]
Length = 193
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N + A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLESEDAGKDIQLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG------- 209
D M +IK V T+C G+AAS A +LAGG KG R A+PN+ IM++QP G+ G
Sbjct: 79 DTMQYIKCDVSTICLGLAASMGAFLLAGGAKGKRIALPNSTIMIHQPSGGAQGQATEIQI 138
Query: 210 ---HVEDVKRQVNE 220
H+ KR +NE
Sbjct: 139 VADHIAKTKRTLNE 152
>gi|251794211|ref|YP_003008942.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
gi|247541837|gb|ACS98855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
Length = 195
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AIY
Sbjct: 21 DIYSRLLKDRIIFLGSGVNDVVANSIIAQMLFLAAEDPEKDISLYINSPGGSITAGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G G RYA+PN+ +M++QP G+ G D++
Sbjct: 81 DTMQYIKPDVSTICVGMAASMGAFLLTAGAIGKRYALPNSEVMIHQPLGGAEGQASDIE 139
>gi|260654935|ref|ZP_05860423.1| Clp protease [Jonquetella anthropi E3_33 E1]
gi|424844795|ref|ZP_18269406.1| protease subunit of ATP-dependent protease [Jonquetella anthropi
DSM 22815]
gi|260630250|gb|EEX48444.1| Clp protease [Jonquetella anthropi E3_33 E1]
gi|363986233|gb|EHM13063.1| protease subunit of ATP-dependent protease [Jonquetella anthropi
DSM 22815]
Length = 195
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G INS+VA ++Q++ L + D DI +Y+N PGG + S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGSEINSLVANSIVAQILFLESDQPDRDICLYINSPGGEVTSGLAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K + T+ G+AAS A+I+LA G G R A+PN+++M++QP G+ G DV+
Sbjct: 81 DTMRYVKCDISTIVVGMAASMASILLAAGTPGKRIALPNSQVMIHQPMGGAYGQASDVEI 140
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + +R L LHT
Sbjct: 141 HAREILKTRQRLNEILALHT 160
>gi|386854013|ref|YP_006203298.1| ATP-dependent Clp protease proteolytic subunit [Borrelia garinii
BgVir]
gi|365194047|gb|AEW68945.1| ClpP [Borrelia garinii BgVir]
Length = 194
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D + DI +
Sbjct: 4 LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LAGG +G R ++ +RIM+
Sbjct: 64 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAGGARGKRESLAYSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 124 HQPWGGISGQASDINIQANE 143
>gi|449469024|ref|XP_004152221.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5,
chloroplastic-like [Cucumis sativus]
Length = 306
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 87/137 (63%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF+ RII G P+ +A ++QL+ L +D + DI+MY+N PGGS+ + +AI+D M
Sbjct: 116 SQLFQYRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTM 175
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D+ Q N
Sbjct: 176 KHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGTQTDIDIQAN 235
Query: 220 EAVISRHVSLSFLLLHT 236
E + + +L HT
Sbjct: 236 EMLHHKANLNGYLSYHT 252
>gi|332882823|ref|ZP_08450434.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332679325|gb|EGJ52311.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 219
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 87/138 (63%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G +N VA +QL+ L ++D DI +Y+
Sbjct: 31 PYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQLLFLESVDSGKDIQIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+Y+ L IYD M +IKP V T+C G+AAS AA++L G +G R A+P++R+M++Q
Sbjct: 91 NSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGAEGKRSALPHSRVMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNE 220
P G+ G D++ + E
Sbjct: 151 PSGGAQGVASDMEINLKE 168
>gi|406981668|gb|EKE03092.1| hypothetical protein ACD_20C00261G0002 [uncultured bacterium]
Length = 203
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 91/146 (62%), Gaps = 11/146 (7%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+G P++ MVA ++QL+ L + + + DI++Y+N PGGS+ + LAI
Sbjct: 18 FDIFSRLLRERIIFLGTPVDDMVANLIVAQLLLLDSENPEKDIMLYINSPGGSVTAGLAI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVED-- 213
YD M I+ V T+C G AAS A +LA G G R A+P++R++++QP G+ G D
Sbjct: 78 YDTMQHIRADVNTICLGQAASMGAFLLAAGTPGKRMALPHSRVLIHQPLGGAQGQATDIE 137
Query: 214 --------VKRQVNEAVISRHVSLSF 231
+KR +NE ++++H SF
Sbjct: 138 IQAAEIGRIKRTLNE-LLAKHTGQSF 162
>gi|449484212|ref|XP_004156818.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5,
chloroplastic-like [Cucumis sativus]
Length = 306
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 87/137 (63%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF+ RII G P+ +A ++QL+ L +D + DI+MY+N PGGS+ + +AI+D M
Sbjct: 116 SQLFQYRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTM 175
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D+ Q N
Sbjct: 176 KHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGTQTDIDIQAN 235
Query: 220 EAVISRHVSLSFLLLHT 236
E + + +L HT
Sbjct: 236 EMLHHKANLNGYLSYHT 252
>gi|291518668|emb|CBK73889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
fibrisolvens 16/4]
Length = 194
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G+ +N A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIVFLGEEVNETTASLTVAQLLFLESEDPSKDIHLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G+AAS A +LAGG+KG R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTMQYIKCDVSTICIGMAASMGAFLLAGGQKGKRFALPNAEVMIHQPLGGAKGQATEIE 137
>gi|390953591|ref|YP_006417349.1| protease subunit of ATP-dependent protease [Aequorivita
sublithincola DSM 14238]
gi|390419577|gb|AFL80334.1| protease subunit of ATP-dependent protease [Aequorivita
sublithincola DSM 14238]
Length = 224
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
Query: 74 KIISG---KNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLA 130
KIIS N P ++ +D+ S L +RIIF+G IN VA +QL+ LA
Sbjct: 24 KIISSMYPTNLTPNIIEERQMNAVAMDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLA 83
Query: 131 TIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMR 190
+ D DI +Y+N PGGS+Y+ L IYD M +IKP V T+C G+AAS AA++L GEKG R
Sbjct: 84 STDAARDIQIYINSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMAAVLLCAGEKGKR 143
Query: 191 YAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+ ++R+M++QP G+ G D++ E + + + H+
Sbjct: 144 SGLTHSRVMIHQPLGGAQGQASDIEITAREIITLKQELYEIIAKHS 189
>gi|325283535|ref|YP_004256076.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
proteolyticus MRP]
gi|324315344|gb|ADY26459.1| ATP-dependent Clp protease proteolytic subunit [Deinococcus
proteolyticus MRP]
Length = 198
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G P+ S +A ++QL+ L + + + +I MY+NCPGG +Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFVGTPVESQMANSIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ + T+C G+A S +++L G+KG R A+PN+RIM++Q +G G+ D++
Sbjct: 79 DTMQYVRAPISTICVGMAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEV 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + HT
Sbjct: 139 QAKEVLSLRDKLVEIYHKHT 158
>gi|87201067|ref|YP_498324.1| ATP-dependent Clp protease proteolytic subunit [Novosphingobium
aromaticivorans DSM 12444]
gi|115311787|sp|Q2G3T3.1|CLPP_NOVAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|87136748|gb|ABD27490.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Novosphingobium aromaticivorans DSM 12444]
Length = 235
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+ + +A I+QL+ L + + DI MY+N PGG + + LAI
Sbjct: 43 FDIYSRLLRERIIFVTGEVEDHMASVIIAQLLFLESENPSKDISMYINSPGGVVTAGLAI 102
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +I+P+V TVC G AAS + +LA GE GMR A+PNARIM++QP G+ G D++
Sbjct: 103 YDTMQYIRPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMIHQPSGGARGMASDIE 162
Query: 216 RQVNE 220
Q E
Sbjct: 163 IQARE 167
>gi|429751517|ref|ZP_19284430.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 326 str. F0382]
gi|429180462|gb|EKY21682.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 219
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 93/154 (60%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G +N VA +QL+ L ++D DI +Y+
Sbjct: 31 PYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQLLFLESVDSAKDIQIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+Y+ L +YD M +IKP V T+C G+AAS AA++L G +G R A+P++R+M++Q
Sbjct: 91 NSPGGSVYAGLGMYDTMQFIKPDVATICTGIAASMAAVLLCAGAEGKRSALPHSRVMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
P G+ G D++ + E + ++ + HT
Sbjct: 151 PSGGAQGVASDMEINLKEMLKLKNELYEIIAKHT 184
>gi|428213615|ref|YP_007086759.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
acuminata PCC 6304]
gi|428001996|gb|AFY82839.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
acuminata PCC 6304]
Length = 201
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R+RI+F+GQ +++ +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGQQVDADLANLIVAQLLFLEAEDAEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M+ I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNHIRPDVSTICLGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKKRLNTLLSEHT 156
>gi|384915524|ref|ZP_10015740.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
(Caseinolytic protease) (Protease Ti) (Heat shock
protein F21.5) [Methylacidiphilum fumariolicum SolV]
gi|384527074|emb|CCG91611.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
(Caseinolytic protease) (Protease Ti) (Heat shock
protein F21.5) [Methylacidiphilum fumariolicum SolV]
Length = 216
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+FIG PI+ +A I+QL+ L D DI +Y++ PGG + + +AIY
Sbjct: 25 DIFSRLLKDRIVFIGTPIDDNIANLVIAQLLFLQMEDPKKDISLYIHSPGGYVTAGMAIY 84
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++ V T C G AAS AA++LA G KG R+A+PNARIM++QP G+ G D+
Sbjct: 85 DTMQFLSCDVNTYCIGQAASMAAVLLAAGTKGKRFALPNARIMIHQPLGGAQGQASDISI 144
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + ++ + L HT
Sbjct: 145 QAQEILRTKRLLNEILSYHT 164
>gi|339499730|ref|YP_004697765.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
caldaria DSM 7334]
gi|338834079|gb|AEJ19257.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
caldaria DSM 7334]
Length = 204
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+ IN + A ++Q++ L D + DI +
Sbjct: 8 LVPIVVEQTGIGERSYDIYSRLLKDRIIFLDGEINDVTADLVVAQMLFLEGQDPEKDISL 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IK V T+C G AAS AA+ILA G G R+A+P++RI++
Sbjct: 68 YINSPGGSVTAGLAIYDTMQYIKCAVQTICLGQAASMAALILAAGTAGKRFALPSSRILI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G +D+ Q E + +++ + HT
Sbjct: 128 HQPWGGAQGQAKDIGIQAKEIGRLKKLTIEYFAKHT 163
>gi|422304551|ref|ZP_16391894.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9806]
gi|425437033|ref|ZP_18817461.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9432]
gi|425446784|ref|ZP_18826783.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9443]
gi|425455241|ref|ZP_18834961.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9807]
gi|425462698|ref|ZP_18842165.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9808]
gi|443653952|ref|ZP_21131195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa DIANCHI905]
gi|159028981|emb|CAO87442.1| clpP1 [Microcystis aeruginosa PCC 7806]
gi|389678071|emb|CCH93046.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9432]
gi|389732839|emb|CCI03287.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9443]
gi|389790315|emb|CCI13820.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9806]
gi|389803899|emb|CCI17216.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9807]
gi|389824204|emb|CCI27015.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Microcystis aeruginosa PCC 9808]
gi|443333933|gb|ELS48469.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Microcystis
aeruginosa DIANCHI905]
Length = 199
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIETTGRGERAFDIYSRLLRERIVFLGQEVTSDLANLIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G+ G R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVSTICIGLAASMGAFLLSAGKPGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQLLNQHLASHT 156
>gi|440682480|ref|YP_007157275.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
cylindrica PCC 7122]
gi|428679599|gb|AFZ58365.1| ATP-dependent Clp protease proteolytic subunit ClpP [Anabaena
cylindrica PCC 7122]
Length = 201
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ ++S +A ++QL+ L + D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDSSLANLIVAQLLFLDSEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDYLAEHT 156
>gi|164686707|ref|ZP_02210735.1| hypothetical protein CLOBAR_00302 [Clostridium bartlettii DSM
16795]
gi|164604097|gb|EDQ97562.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium bartlettii DSM 16795]
Length = 193
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+ +N A ++QL+ L D D DI +
Sbjct: 3 LVPTVVEQTGRGERAYDIYSRLLKDRIIFLSDEVNDTTASLVVAQLLFLEAEDPDKDIHL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM+
Sbjct: 63 YINSPGGSVTAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLNAGAKGKRFALPNSEIMI 122
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G D++
Sbjct: 123 HQPLGGAKGQATDIE 137
>gi|408490911|ref|YP_006867280.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychroflexus
torquis ATCC 700755]
gi|408468186|gb|AFU68530.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychroflexus
torquis ATCC 700755]
Length = 224
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 23/195 (11%)
Query: 59 LKIDE--KDFCSTEHSY------KIISGKNDNPPLMPAVMTP---------GGPLDLSSV 101
+K+D+ K F + +H KII+ + P+ MTP +D+ S
Sbjct: 1 MKMDKEFKKFATKDHGVNANYYDKIIT------SMTPSAMTPNIIEERQMNAVAMDVFSR 54
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
L +RIIF+G PIN VA +QL+ L + D DI +Y+N PGGS+Y+ L IYD M +
Sbjct: 55 LMMDRIIFLGLPINDQVANIIQAQLLFLESTDSSKDIQIYINSPGGSVYAGLGIYDTMQF 114
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
IKP V T+ G+AAS A++L G G R +P++R+M++QP G+ G +D++ N+
Sbjct: 115 IKPDVATINTGIAASMGAVLLCAGTAGKRSGLPHSRVMIHQPMGGAQGQADDIEITANQI 174
Query: 222 VISRHVSLSFLLLHT 236
++ + + + H+
Sbjct: 175 IMLKEELYTIISKHS 189
>gi|340753245|ref|ZP_08690034.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
2_1_31]
gi|422314997|ref|ZP_16396444.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
periodonticum D10]
gi|229422844|gb|EEO37891.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
2_1_31]
gi|404593038|gb|EKA94701.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
periodonticum D10]
Length = 193
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 6/140 (4%)
Query: 87 PAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L + D + DI+MY+
Sbjct: 4 PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDENVANSIIAQLLYLESEDPEKDIIMYI 63
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ +AIYD M++IKP V TVC G AAS A +L+ G KG R+A+ N+RIM++Q
Sbjct: 64 NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLSSGAKGKRFALENSRIMIHQ 123
Query: 203 P--QSGSGGHVEDVKRQVNE 220
P G G D+ NE
Sbjct: 124 PLISGGLKGQATDISIHANE 143
>gi|337746797|ref|YP_004640959.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
mucilaginosus KNP414]
gi|379720679|ref|YP_005312810.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus 3016]
gi|336297986|gb|AEI41089.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus KNP414]
gi|378569351|gb|AFC29661.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
mucilaginosus 3016]
Length = 200
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 82/131 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA I+QL+ L+ D D DI +Y+N PGGS + L I
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDTVANSIIAQLLLLSAEDPDKDIHLYINSPGGSTTAGLGIL 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS AA++L G G R+A+P+A +M++QP GS G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMAAVLLVSGAPGKRFALPHAEVMIHQPHGGSQGQASDIHI 138
Query: 217 QVNEAVISRHV 227
V +R +
Sbjct: 139 HAQRIVQTREL 149
>gi|320102926|ref|YP_004178517.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
pallida ATCC 43644]
gi|319750208|gb|ADV61968.1| ATP-dependent Clp protease proteolytic subunit ClpP [Isosphaera
pallida ATCC 43644]
Length = 209
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
P++P V+ GG +D+ S L ++RII + ++ + A ++QL+ LA D A+I
Sbjct: 2 PMVPIVIERGGREERAMDIYSRLLQDRIIMLSSILDDVTANLIVAQLLVLAHQDAKAEIS 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+YLN PGGS+ +A+YD M +I V T C G+AAS AAI+LAGG KG R+A+P+++IM
Sbjct: 62 LYLNSPGGSLTGTMAVYDTMQFIGCPVATYCIGMAASGAAILLAGGTKGRRHALPHSKIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
L+QP GG V D+ Q E + ++ V L T
Sbjct: 122 LHQPYGHVGGQVSDISIQAAEVLRNKAVVEKVLARRT 158
>gi|262066529|ref|ZP_06026141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
periodonticum ATCC 33693]
gi|294783780|ref|ZP_06749104.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 1_1_41FAA]
gi|358467634|ref|ZP_09177325.1| hypothetical protein HMPREF9093_01805 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|291379763|gb|EFE87281.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
periodonticum ATCC 33693]
gi|294480658|gb|EFG28435.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Fusobacterium
sp. 1_1_41FAA]
gi|357067511|gb|EHI77623.1| hypothetical protein HMPREF9093_01805 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 193
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 6/140 (4%)
Query: 87 PAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L + D + DI+MY+
Sbjct: 4 PTVIDNNGKSERAYDIYSRLLKDRIIFVGTAIDENVANSIIAQLLYLESEDPEKDIIMYI 63
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ +AIYD M++IKP V TVC G AAS A +L+ G KG R+A+ N+RIM++Q
Sbjct: 64 NSPGGSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLSSGAKGKRFALENSRIMIHQ 123
Query: 203 P--QSGSGGHVEDVKRQVNE 220
P G G D+ NE
Sbjct: 124 PLISGGLKGQATDISIHANE 143
>gi|119713091|gb|ABL97160.1| ATP-dependent Clp protease proteolytic subunit [uncultured marine
bacterium EB0_49D07]
Length = 204
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 99/159 (62%), Gaps = 15/159 (9%)
Query: 82 NPPLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ TP G D+ S L + RIIF+ PI+ ++ ++QL+ L + + + D
Sbjct: 5 NSGLVPMVVEQTPRGERAFDIYSRLLKERIIFLTGPIDDYISNLVVAQLLFLESENPEKD 64
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGG I S LAIYD M +I P+V T+C G AAS +++LAGG +G R+A+ N+R
Sbjct: 65 ISIYINSPGGVITSGLAIYDTMQFIAPEVSTLCIGQAASMGSLLLAGGAEGKRFALTNSR 124
Query: 198 IMLNQPQSGSGGHVED----------VKRQVNEAVISRH 226
IM++QP G G D VK++VNE ++S+H
Sbjct: 125 IMIHQPLGGFSGQASDFEIHAKEMLLVKQKVNE-ILSKH 162
>gi|423608926|ref|ZP_17584817.1| ATP-dependent Clp protease proteolytic subunit 2, partial [Bacillus
cereus VD102]
gi|401236333|gb|EJR42794.1| ATP-dependent Clp protease proteolytic subunit 2, partial [Bacillus
cereus VD102]
Length = 134
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ L + D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGH 210
D M +IKP+V T+C G+AAS A +LA GEKG RYA+PN+ +M++QP G+ G
Sbjct: 79 DTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQ 132
>gi|60389557|sp|Q6AK59.2|CLPP_DESPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 203
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L + RIIF+G +N VA ++QL+ L D + DI
Sbjct: 3 LIPMVVEQTPRGERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDITF 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IK + T+C G AAS A++LA G G RYA+PN+RIM+
Sbjct: 63 YINSPGGSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRIMI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ E + R + L HT
Sbjct: 123 HQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHT 158
>gi|414079240|ref|YP_007000664.1| peptidase family S14 ClpP [Anabaena sp. 90]
gi|413972519|gb|AFW96607.1| peptidase family S14 ClpP [Anabaena sp. 90]
Length = 201
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ ++S +A ++QL+ L + D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGEQVDSNLANLIVAQLLFLDSEDAEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D+ Q E + + FL HT
Sbjct: 121 HQPLGGAQGQATDIAIQAREILYHKQRLNEFLADHT 156
>gi|328950943|ref|YP_004368278.1| ATP-dependent Clp protease proteolytic subunit [Marinithermus
hydrothermalis DSM 14884]
gi|328451267|gb|AEB12168.1| ATP-dependent Clp protease proteolytic subunit [Marinithermus
hydrothermalis DSM 14884]
Length = 194
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI++ VA ++Q++ L + + +I +Y+N PGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDTQVANTVVAQILFLEAQNPNQEIKLYINSPGGEVDAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ V T+C G+AAS AA+ILA GE G RYA+P++R+M++QP G+ G D+
Sbjct: 78 DTMQYVRAPVSTICVGLAASMAAVILAAGEPGRRYALPHSRVMIHQPWGGARGQAADIAI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
+ + + R L HT
Sbjct: 138 EAEQILKMRENLNKILSQHT 157
>gi|320450477|ref|YP_004202573.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermus
scotoductus SA-01]
gi|320150646|gb|ADW22024.1| ATP-dependent Clp protease, proteolytic, subunit ClpP [Thermus
scotoductus SA-01]
Length = 212
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 91/140 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+S VA ++QL+ L + + +I +Y+N PGG + + LAIY
Sbjct: 36 DIYSRLLKDRIIFLGTPIDSQVANIIVAQLLFLDAQNPNQEIRLYINSPGGEVDAGLAIY 95
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +++ V T+ G+AAS AA+ILA GEKG RYA+P++++M++QP G G D+
Sbjct: 96 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHSKVMIHQPWGGVRGTASDIAI 155
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + ++ + L HT
Sbjct: 156 QAQEILKAKKLLNEILAKHT 175
>gi|229586800|ref|YP_002845301.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
ESF-5]
gi|228021850|gb|ACP53558.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
ESF-5]
Length = 216
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 4/141 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ P D+ S L + RIIF+ + +A ++QL+ L + DI MY
Sbjct: 19 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 78
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG + + LAIYD M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++
Sbjct: 79 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 138
Query: 202 QPQSGSGGHVEDVKRQVNEAV 222
QP G G D++ E +
Sbjct: 139 QPSGGYKGQATDIEIHAQETL 159
>gi|32490904|ref|NP_871158.1| hypothetical protein WGLp155 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|31340011|sp|Q8D346.1|CLPP_WIGBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|25166110|dbj|BAC24301.1| clpP [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 194
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ D+ S L + RIIF+ I +A I+Q++ L + D + DI +
Sbjct: 3 LIPTVVEKNARGERSYDIFSRLLKERIIFVTGKIEDYMANLIIAQMIFLESEDPEKDIFL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S ++IYD M +IK +V T+C G ++S AA+ILA GEKG R+++PNARIM+
Sbjct: 63 YINSPGGVVTSGMSIYDTMQFIKCEVSTLCIGQSSSMAALILASGEKGKRFSLPNARIMI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP GS G D+ E + + + L HT
Sbjct: 123 HQPLGGSQGQATDIAIHTTEILKIKKCMIELLSKHT 158
>gi|373106651|ref|ZP_09520951.1| ATP-dependent Clp protease proteolytic subunit [Stomatobaculum
longum]
gi|371651590|gb|EHO17016.1| ATP-dependent Clp protease proteolytic subunit [Stomatobaculum
longum]
Length = 193
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+ + +N + A ++QL+ L + D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIFSRLLKDRIIFLDEEVNDVSAGLVVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G+AAS A +L+GG KG RYA+PNA IM++QP G+ G ++ R
Sbjct: 79 DTMQYVKCDVSTICIGMAASMGAFLLSGGTKGKRYALPNAEIMIHQPSGGAQGQETEI-R 137
Query: 217 QVNEAVISRHVSLSFLL 233
V E ++ L+ +L
Sbjct: 138 IVAEQILKTRNKLNEIL 154
>gi|339007540|ref|ZP_08640114.1| ATP-dependent Clp protease proteolytic subunit 2 [Brevibacillus
laterosporus LMG 15441]
gi|421870979|ref|ZP_16302601.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
laterosporus GI-9]
gi|338774743|gb|EGP34272.1| ATP-dependent Clp protease proteolytic subunit 2 [Brevibacillus
laterosporus LMG 15441]
gi|372459606|emb|CCF12150.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
laterosporus GI-9]
Length = 192
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 88/139 (63%), Gaps = 10/139 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ +A ++QL+ L + + DI +Y+N PGGS+ + +AIY
Sbjct: 18 DIYSRLLKDRIIFLGSEIDDEIANAVVAQLLFLESEEPGKDISLYINSPGGSVTAGMAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D M +IK V T+C G+AAS A++LA G KG R+A+PN+ +M++QP G G ED+
Sbjct: 78 DTMQFIKSDVSTICIGMAASMGAVLLAAGAKGKRFALPNSEVMIHQPLGGVRGQAEDIRI 137
Query: 215 --------KRQVNEAVISR 225
KRQ+NE + R
Sbjct: 138 HADWIIKTKRQLNEILAER 156
>gi|51246390|ref|YP_066274.1| ATP-dependent Clp protease, proteolytic subunit (ClpP)
[Desulfotalea psychrophila LSv54]
gi|50877427|emb|CAG37267.1| probable ATP-dependent Clp protease, proteolytic subunit (ClpP)
[Desulfotalea psychrophila LSv54]
Length = 213
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L + RIIF+G +N VA ++QL+ L D + DI
Sbjct: 13 LIPMVVEQTPRGERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDITF 72
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IK + T+C G AAS A++LA G G RYA+PN+RIM+
Sbjct: 73 YINSPGGSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRIMI 132
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ E + R + L HT
Sbjct: 133 HQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHT 168
>gi|300865787|ref|ZP_07110541.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
sp. PCC 6506]
gi|300336200|emb|CBN55696.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
sp. PCC 6506]
Length = 203
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R+RI+F+GQ + S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGQQVTSDLANLIVAQLLFLDAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M+ I+P+V T+C G+AAS A +L+ G KG R +P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMNHIRPEVSTICLGLAASMGAFLLSAGAKGKRMTLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEHLAAHT 156
>gi|15892669|ref|NP_360383.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia conorii
str. Malish 7]
gi|15619841|gb|AAL03284.1| ATP-dependent clp protease proteolytic subunit [Rickettsia conorii
str. Malish 7]
Length = 216
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 4/141 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ P D+ S L + RIIF+ + +A ++QL+ L + DI MY
Sbjct: 19 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 78
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG + + LAIYD M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++
Sbjct: 79 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 138
Query: 202 QPQSGSGGHVEDVKRQVNEAV 222
QP G G D++ E +
Sbjct: 139 QPSGGYKGQATDIEIHAQETL 159
>gi|393780288|ref|ZP_10368506.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Capnocytophaga sp. oral taxon 412 str. F0487]
gi|392608760|gb|EIW91598.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Capnocytophaga sp. oral taxon 412 str. F0487]
Length = 219
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 87/138 (63%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G +N +A +QL+ L ++D DI +Y+
Sbjct: 31 PYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQIANIVTAQLLFLESVDSAKDIQIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+Y+ L IYD M +IKP V T+C G+AAS AA++L G +G R A+P++R+M++Q
Sbjct: 91 NSPGGSVYAGLGIYDTMQFIKPDVATICTGIAASMAAVLLCAGTEGKRSALPHSRVMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNE 220
P G+ G D++ + E
Sbjct: 151 PSGGAQGVASDMEINLKE 168
>gi|367467825|ref|ZP_09467740.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
gi|365817097|gb|EHN12080.1| ATP-dependent Clp protease proteolytic subunit [Patulibacter sp.
I11]
Length = 204
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ +P G D+ S L +R +F+G I+S VA I+QL+ L +D + DI
Sbjct: 2 PLVPMVVEQSPRGERSFDIYSRLLNDRAVFLGSQIDSDVANLVIAQLLHLEAVDPEKDIQ 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGG +Y+ LAIYD M +++ V TVC G+A S +I+L GG G R A+PN+RI+
Sbjct: 62 LYVNSPGGDVYASLAIYDAMQYVRCDVATVCSGIAMSGGSIVLCGGAAGKRAALPNSRIL 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G G D++ E + R + HT
Sbjct: 122 VHQPHGGMQGQSSDIEIHAKEMLWMRDRIEELYVQHT 158
>gi|298491692|ref|YP_003721869.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc
azollae' 0708]
gi|298233610|gb|ADI64746.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc
azollae' 0708]
Length = 232
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDNVANSIVAQLLFLDAEDSGKDIQL 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G G R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTAGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q E
Sbjct: 149 HQPLGGAQGQAIDIEIQARE 168
>gi|282898518|ref|ZP_06306508.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
gi|281196684|gb|EFA71590.1| Peptidase S14, ClpP [Raphidiopsis brookii D9]
Length = 201
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L + D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSSLANLIVAQLLFLDSEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKNIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNEYLAEHT 156
>gi|226310010|ref|YP_002769904.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
gi|226092958|dbj|BAH41400.1| ATP-dependent Clp protease proteolytic subunit [Brevibacillus
brevis NBRC 100599]
Length = 193
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 83/131 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA ++QL+ LA D DI +Y+N PGGS+ + +AI
Sbjct: 19 DIYSRLLKDRIIFLGSAIDDQVANAVVAQLLFLAAEDPKKDIHLYINSPGGSVTAGMAII 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++ P V T+C G+AAS A++L G G RYA+PNA +ML+QP GS G D+K
Sbjct: 79 DTMKFVAPDVSTICTGMAASMGAMLLVAGAPGKRYALPNAEVMLHQPWGGSQGQASDIKI 138
Query: 217 QVNEAVISRHV 227
+ + RH+
Sbjct: 139 AADRIMRHRHM 149
>gi|21593305|gb|AAM65254.1| ATP-dependent Clp protease proteolytic subunit (ClpP4) [Arabidopsis
thaliana]
Length = 292
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 85/134 (63%)
Query: 93 GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV 152
G D+ +L R RI+F+G I+ VA +SQL+ L D DI +++N PGGS+ +
Sbjct: 75 GAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSAT 134
Query: 153 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVE 212
+AIYD + ++ V T+ G+AAS A+IIL G KG R+AMPN RIM++QP G+ G V
Sbjct: 135 MAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQVI 194
Query: 213 DVKRQVNEAVISRH 226
DV+ Q E + +++
Sbjct: 195 DVEIQAKEVMHNKN 208
>gi|238650581|ref|YP_002916433.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
peacockii str. Rustic]
gi|259585964|sp|C4K1D4.1|CLPP_RICPU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|238624679|gb|ACR47385.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
peacockii str. Rustic]
Length = 201
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 138
Query: 217 QVNEAV 222
E +
Sbjct: 139 HAQETL 144
>gi|119945201|ref|YP_942881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Psychromonas
ingrahamii 37]
gi|259585963|sp|A1SUW7.1|CLPP_PSYIN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|119863805|gb|ABM03282.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychromonas
ingrahamii 37]
Length = 207
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 84/143 (58%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ P+ VA +QL+ L + + DI +Y+N PGGSI + +AIY
Sbjct: 32 DIYSRLLKERVIFLTGPVEDHVANVIAAQLLFLESESPEKDIFIYINSPGGSISAGMAIY 91
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V TVC G+AAS A +LA G G R+ +PNA++M++QP G G D +
Sbjct: 92 DTMQFIKPDVSTVCMGMAASMGAFLLASGAPGKRHCLPNAKVMIHQPLGGFQGQASDFEI 151
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + ++H L HT D
Sbjct: 152 HAKEILATKHRMNELLAFHTGKD 174
>gi|406893554|gb|EKD38590.1| hypothetical protein ACD_75C00684G0001 [uncultured bacterium]
Length = 176
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
Query: 104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK 163
+ RI+F+G +N VA ++QL+ L D D DI Y+N PGGS+ + +AIYD M ++K
Sbjct: 2 KERIVFLGSGVNDDVANVIVAQLLFLEAEDPDKDITFYINSPGGSVTAGMAIYDTMQYVK 61
Query: 164 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVI 223
+ T+C G AAS A +LA G G RY++PNARIM++QP G G D+ Q E ++
Sbjct: 62 SDIATLCIGQAASMGAFLLAAGTDGKRYSLPNARIMIHQPAGGFQGQATDIDIQAKE-IL 120
Query: 224 SRHVSLSFLLLHTLNDS 240
L++LL H +S
Sbjct: 121 RMKKDLNYLLAHHTKNS 137
>gi|443311871|ref|ZP_21041494.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechocystis
sp. PCC 7509]
gi|442778107|gb|ELR88377.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechocystis
sp. PCC 7509]
Length = 219
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 5/155 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+G ++ VA ++QL+ L D + DI +
Sbjct: 16 IVPTVVEQSGMGERAFDIYSRLLRERIVFLGTQVDDAVADSIVAQLLFLDAEDPEKDIQL 75
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD + I+P V T+CFG+AAS A +L G KG R ++P+ARIM+
Sbjct: 76 YINSPGGSVTAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGAKGKRMSLPSARIMI 135
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
+QP G+ G D++ Q E ++ L+ LL H
Sbjct: 136 HQPLGGAQGQAVDIEIQAKE-ILYHKSRLNELLAH 169
>gi|428209784|ref|YP_007094137.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Chroococcidiopsis thermalis PCC 7203]
gi|428011705|gb|AFY90268.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Chroococcidiopsis thermalis PCC 7203]
Length = 202
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ I+S +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQAIDSNLANLIVAQLLYLDAEDGEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRKLNEHLAEHT 156
>gi|398347022|ref|ZP_10531725.1| ATP-dependent Clp protease proteolytic subunit [Leptospira broomii
str. 5399]
Length = 198
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L ++RIIF+G I+ A I+QL+ L + D DI +
Sbjct: 3 VIPVVIEQTGRGERSYDIYSRLLKDRIIFLGNAISDEYANVVIAQLLFLDAENPDRDIYL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S LAIYD M +IK V T+C G A+S AA++LAGG KG R A+P++RIM+
Sbjct: 63 YINSPGGYVSSGLAIYDTMQYIKADVRTLCVGQASSMAALLLAGGAKGKRSALPHSRIMM 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D+ Q E + + V HT
Sbjct: 123 HQPTGGATGQASDIAIQAKEVLKLKEVLNGLYTKHT 158
>gi|383484037|ref|YP_005392950.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia parkeri
str. Portsmouth]
gi|378936391|gb|AFC74891.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia parkeri
str. Portsmouth]
Length = 201
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 138
Query: 217 QVNEAV 222
E +
Sbjct: 139 HAQETL 144
>gi|194476660|ref|YP_002048839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paulinella
chromatophora]
gi|171191667|gb|ACB42629.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paulinella
chromatophora]
Length = 193
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 81/131 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
L+ ++ L RIIF+G+ + + V R ++QL+ L D + DI +Y+N PGGS+Y L I
Sbjct: 16 LNFTARLMDERIIFLGEAVTAEVTNRIVTQLLLLEADDSEKDIYLYINSPGGSVYDGLGI 75
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M IKP V TVC G+AAS A +LA G KG R ++ N+RIM++QP G G D++
Sbjct: 76 LDTMQHIKPDVYTVCVGLAASMGAFLLAAGTKGKRCSLFNSRIMIHQPSGGIRGQASDMR 135
Query: 216 RQVNEAVISRH 226
Q NE +H
Sbjct: 136 IQANEITYLKH 146
>gi|406886285|gb|EKD33336.1| hypothetical protein ACD_76C00044G0003 [uncultured bacterium]
Length = 204
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R+RIIF+G I+ +VA I+QL+ L + D+ DI +Y+N PGGS+ + LAIY
Sbjct: 32 DIYSRLLRDRIIFLGSAIDDVVANTVIAQLLFLESQDKTKDIKLYINSPGGSVTAGLAIY 91
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M + P V T C G+AAS +A++LA G KG R+A+PNA IM++Q G G D+K
Sbjct: 92 DAMQHVGPDVSTTCVGLAASMSAVLLAAGAKGKRFALPNAEIMIHQVLGGVQGQATDIK 150
>gi|374709641|ref|ZP_09714075.1| ATP-dependent Clp protease proteolytic subunit [Sporolactobacillus
inulinus CASD]
Length = 194
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 86/136 (63%), Gaps = 4/136 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ D+ S L ++RII +G I+ VA ++QL+ LA D + DI
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANAVVAQLLFLAAEDSEKDIS 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y+N PGGSI + +AI+D M +IKPKV T+C G+AAS + +L GE G RYA+PN+ IM
Sbjct: 62 IYINSPGGSITAGMAIFDTMQYIKPKVSTICIGMAASMGSFLLTAGEIGKRYALPNSEIM 121
Query: 200 LNQPQSGSGGHVEDVK 215
++QP G G D++
Sbjct: 122 IHQPLGGMQGQAADME 137
>gi|333994506|ref|YP_004527119.1| Clp protease [Treponema azotonutricium ZAS-9]
gi|333737298|gb|AEF83247.1| Clp protease [Treponema azotonutricium ZAS-9]
Length = 204
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+F+ IN + A ++QL+ L D + DI +
Sbjct: 8 LIPYVIEQSGNGERSYDIYSRLLKDRIVFVDGEINDLTADLVVAQLLFLDGQDTEKDINL 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++K V T+C G AAS AA+IL G G R+ +P+AR+++
Sbjct: 68 YINSPGGSVTAGLAIYDTMQYVKCDVQTICLGQAASMAALILTAGAAGKRHILPSARVLI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D+ Q E V + +++ + HT
Sbjct: 128 HQPWGGAQGQARDIGIQSKEIVRLKKLTIEYFAKHT 163
>gi|295109356|emb|CBL23309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ruminococcus
obeum A2-162]
Length = 193
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N + A ++QL+ L D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSASIIVAQLLFLEAEDPSKDIQLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG------- 209
D M +IK V T+C G+AAS A +LAGG KG RYA+P++ IM++QP G+ G
Sbjct: 79 DTMKYIKCDVSTICLGMAASMGAFLLAGGTKGKRYALPHSTIMIHQPSGGAQGQATEIQI 138
Query: 210 ---HVEDVKRQVNE 220
H+ KR +NE
Sbjct: 139 VADHIAQTKRTLNE 152
>gi|317130215|ref|YP_004096497.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bacillus
cellulosilyticus DSM 2522]
gi|315475163|gb|ADU31766.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bacillus
cellulosilyticus DSM 2522]
Length = 195
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 84/130 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA +SQL+ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAADDPEKDISLYINSPGGSITAGMAIF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+PKV T+C G+AAS A +LA GE G R+A+PN+ +M++QP G+ G D++
Sbjct: 79 DTMQFIQPKVQTICIGMAASMGAFLLAAGEPGKRFALPNSEVMIHQPLGGAQGQAADIEI 138
Query: 217 QVNEAVISRH 226
V R
Sbjct: 139 HAKRIVQMRE 148
>gi|386819894|ref|ZP_10107110.1| protease subunit of ATP-dependent protease [Joostella marina DSM
19592]
gi|386425000|gb|EIJ38830.1| protease subunit of ATP-dependent protease [Joostella marina DSM
19592]
Length = 225
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 82/125 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G IN VA +QL+ L + D DI +Y+N PGGS+Y+ L I
Sbjct: 49 MDVFSRLMMDRIIFMGTGINDQVANIIQAQLLFLESADASKDIQIYINSPGGSVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS A++L GEKG R A+P++R+M++QP G+ G D++
Sbjct: 109 YDTMQYIKPDVATICTGMAASMGAVLLCAGEKGKRSALPHSRVMIHQPLGGAQGQASDIE 168
Query: 216 RQVNE 220
E
Sbjct: 169 ITARE 173
>gi|148381180|ref|YP_001255721.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A str. ATCC 3502]
gi|153933152|ref|YP_001385555.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A str. ATCC 19397]
gi|153934525|ref|YP_001388961.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A str. Hall]
gi|153939192|ref|YP_001392582.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum F str. Langeland]
gi|168179119|ref|ZP_02613783.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum NCTC 2916]
gi|168183548|ref|ZP_02618212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum Bf]
gi|170754567|ref|YP_001782870.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum B1 str. Okra]
gi|226950659|ref|YP_002805750.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A2 str. Kyoto]
gi|237796687|ref|YP_002864239.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum Ba4 str. 657]
gi|384463549|ref|YP_005676144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum F str. 230613]
gi|387819501|ref|YP_005679848.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum H04402 065]
gi|421839011|ref|ZP_16272698.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum CFSAN001627]
gi|429247534|ref|ZP_19210776.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum CFSAN001628]
gi|166201814|sp|A7FYI2.1|CLPP_CLOB1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201815|sp|A5I6W1.1|CLPP_CLOBH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201816|sp|A7GIH2.1|CLPP_CLOBL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706445|sp|B1IND7.1|CLPP_CLOBK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763786|sp|C1FLA6.1|CLPP_CLOBJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|148290664|emb|CAL84793.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum A str. ATCC 3502]
gi|152929196|gb|ABS34696.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum A str. ATCC 19397]
gi|152930439|gb|ABS35938.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum A str. Hall]
gi|152935088|gb|ABS40586.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum F str. Langeland]
gi|169119779|gb|ACA43615.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum B1 str. Okra]
gi|182670165|gb|EDT82141.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum NCTC 2916]
gi|182673367|gb|EDT85328.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum Bf]
gi|226842960|gb|ACO85626.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum A2 str. Kyoto]
gi|229261301|gb|ACQ52334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum Ba4 str. 657]
gi|295320566|gb|ADG00944.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
botulinum F str. 230613]
gi|322807545|emb|CBZ05120.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum H04402 065]
gi|409736336|gb|EKN37768.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum CFSAN001627]
gi|428755428|gb|EKX78057.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
botulinum CFSAN001628]
Length = 194
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 77/118 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + + +N A ++QL+ L D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDI 136
>gi|189502525|ref|YP_001958242.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497966|gb|ACE06513.1| hypothetical protein Aasi_1180 [Candidatus Amoebophilus asiaticus
5a2]
Length = 224
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 89/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G P++ ++ ++QL+ L + D D+ +Y+N PGGS+Y L I
Sbjct: 47 IDVFSRLIMDRIIFLGMPVDDHISNIIVAQLLFLESTDPKKDVRLYINSPGGSVYPGLGI 106
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +I P V T+C G+AAS AA++LAGG RYA+P++RI+++QP G+ G D++
Sbjct: 107 YDTMQYIAPDVHTICTGLAASMAAVLLAGGAHKKRYALPHSRILIHQPLGGAQGQASDME 166
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
V + + + L HT
Sbjct: 167 ITVKQMLEIKRDLYQILAKHT 187
>gi|282899048|ref|ZP_06307029.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
gi|281195964|gb|EFA70880.1| Peptidase S14, ClpP [Cylindrospermopsis raciborskii CS-505]
Length = 201
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L + D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSSLANLIVAQLLFLDSEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKNIRPNVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNEYLAEHT 156
>gi|308050308|ref|YP_003913874.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
balearica DSM 9799]
gi|307632498|gb|ADN76800.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
balearica DSM 9799]
Length = 207
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGGS+ + ++IY
Sbjct: 28 DIYSRLLKERVIFLTGPVEDHMANLVVAQLLFLESENPDKDIYLYINSPGGSVTAGMSIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V TVC G AAS A +LAGG KG R+ +PN+R+M++QP G G D+
Sbjct: 88 DTMQFIKPDVSTVCMGQAASMGAFLLAGGAKGKRHVLPNSRVMIHQPLGGFQGQASDIAI 147
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + +H L HT
Sbjct: 148 HAQEILGIKHKLNLLLAEHT 167
>gi|126668931|ref|ZP_01739872.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
ELB17]
gi|126626594|gb|EAZ97250.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
ELB17]
Length = 211
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 86/144 (59%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGGS+ + ++I
Sbjct: 32 FDIYSRLLKERVIFMVGPVEDHMANLVVAQLLFLESENPDKDIHLYINSPGGSVSAGMSI 91
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G AAS A +LAGG G R +PN+R+M++QP G G D++
Sbjct: 92 YDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPNSRVMIHQPLGGYQGQATDIE 151
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
E + RH S L HT D
Sbjct: 152 IHTREILKIRHTLNSILAHHTGQD 175
>gi|34581620|ref|ZP_00143100.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
246]
gi|341583923|ref|YP_004764414.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
heilongjiangensis 054]
gi|350273581|ref|YP_004884894.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia japonica
YH]
gi|374319373|ref|YP_005065872.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia slovaca
13-B]
gi|383751354|ref|YP_005426455.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia slovaca
str. D-CWPP]
gi|20137864|sp|Q92HM5.2|CLPP_RICCN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|28263005|gb|EAA26509.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
246]
gi|340808149|gb|AEK74737.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
heilongjiangensis 054]
gi|348592794|dbj|BAK96755.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia japonica
YH]
gi|360041922|gb|AEV92304.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia slovaca
13-B]
gi|379774368|gb|AFD19724.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia slovaca
str. D-CWPP]
Length = 201
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 138
Query: 217 QVNEAV 222
E +
Sbjct: 139 HAQETL 144
>gi|443293554|ref|ZP_21032648.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Micromonospora lupini str. Lupac 08]
gi|385883412|emb|CCH20799.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Micromonospora lupini str. Lupac 08]
Length = 213
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 83/135 (61%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
L + RIIF+G + VA R +QL+ LA D D DI +++N PGGS+YS +AIYD M +
Sbjct: 33 LLKERIIFLGSEVTDQVANRICAQLLLLAAEDPDRDINLWINSPGGSVYSGMAIYDTMQF 92
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
I V TV G+AAS ++L G KG RYA+P+ARIM++QP G GG D+ Q +
Sbjct: 93 IDNDVSTVAMGMAASMGQLLLCAGTKGKRYALPHARIMMHQPSGGLGGTASDIAIQAEQM 152
Query: 222 VISRHVSLSFLLLHT 236
+ ++ + + HT
Sbjct: 153 LYTKRMFQERVAHHT 167
>gi|418055593|ref|ZP_12693647.1| ATP-dependent Clp protease proteolytic subunit [Hyphomicrobium
denitrificans 1NES1]
gi|353209871|gb|EHB75273.1| ATP-dependent Clp protease proteolytic subunit [Hyphomicrobium
denitrificans 1NES1]
Length = 217
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 11/153 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
DL S L + RIIF+ P+ +A QL+ L + + +I MY+N PGG + + +AIY
Sbjct: 28 DLPSRLLKERIIFVTGPVEDHMAASICMQLLFLESENPKKEISMYINSPGGVVTAGMAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG------- 209
D M ++KP V T+C G AAS +++L GEKGMR+A+PNARIM++QP G G
Sbjct: 88 DTMQFVKPPVATLCIGQAASMGSLLLCAGEKGMRFALPNARIMVHQPSGGFSGQASDIER 147
Query: 210 HVEDV---KRQVNEAVISRHVSLSFLLLHTLND 239
H ED+ KR++NE + +H S+ ++ D
Sbjct: 148 HAEDIIKMKRRLNETYV-KHTGQSYEVIEKTLD 179
>gi|116070498|ref|ZP_01467767.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
BL107]
gi|116065903|gb|EAU71660.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
BL107]
Length = 197
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGASGQASDIRIQADE 140
>gi|347528435|ref|YP_004835182.1| ATP-dependent Clp protease proteolytic subunit [Sphingobium sp.
SYK-6]
gi|345137116|dbj|BAK66725.1| ATP-dependent Clp protease proteolytic subunit [Sphingobium sp.
SYK-6]
Length = 211
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 81/125 (64%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+ + +A ++QL+ L + + DI MY+N PGG + S +AI
Sbjct: 27 FDIYSRLLRERIIFVTGQVEDHMASLIVAQLLFLESENPKKDIWMYINSPGGVVTSGMAI 86
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
+D M +I+PKVGTVC G AAS + +LA GE GMR+A+ NARIM++QP G+ G D++
Sbjct: 87 HDTMQYIRPKVGTVCIGQAASMGSFLLAAGEPGMRFALSNARIMIHQPSGGAQGMASDIE 146
Query: 216 RQVNE 220
Q E
Sbjct: 147 IQAKE 151
>gi|114048055|ref|YP_738605.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
MR-7]
gi|123326387|sp|Q0HTK7.1|CLPP_SHESR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|113889497|gb|ABI43548.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
MR-7]
Length = 202
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 84/141 (59%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AI
Sbjct: 26 FDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAI 85
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 86 YDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIA 145
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E + +H L HT
Sbjct: 146 IHAQEILGIKHKLNLMLAEHT 166
>gi|428202443|ref|YP_007081032.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pleurocapsa
sp. PCC 7327]
gi|427979875|gb|AFY77475.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pleurocapsa
sp. PCC 7327]
Length = 204
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + A ++QL+ L D + DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRERIVFLGQQVTDESANLVVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + +++ L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKNLLNEHLASHT 156
>gi|56478265|ref|YP_159854.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
aromaticum EbN1]
gi|67460188|sp|Q5P161.1|CLPP_AZOSE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56314308|emb|CAI08953.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
aromaticum EbN1]
Length = 212
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R+IF+ P+N + A ++QL+ L + + D D+
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLIVAQLLFLESENPDKDVYF 78
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ S +AIYD M +IKP V T+C G AAS + +LA GEKG R+ +PN+R+M+
Sbjct: 79 YINSPGGSVSSGMAIYDTMQFIKPSVSTLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMI 138
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D++ E + R L HT
Sbjct: 139 HQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHT 174
>gi|165933331|ref|YP_001650120.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Iowa]
gi|165908418|gb|ABY72714.1| ATP-dependent endopeptidase clp proteolytic subunit [Rickettsia
rickettsii str. Iowa]
Length = 216
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 4/141 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ P D+ S L + RIIF+ + +A ++QL+ L + DI MY
Sbjct: 19 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 78
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGG + + LAIYD M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++
Sbjct: 79 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 138
Query: 202 QPQSGSGGHVEDVKRQVNEAV 222
QP G G D++ E +
Sbjct: 139 QPSGGYKGQATDIEIHAQETL 159
>gi|67459164|ref|YP_246788.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia felis
URRWXCal2]
gi|75536404|sp|Q4ULF0.1|CLPP_RICFE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67004697|gb|AAY61623.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia felis
URRWXCal2]
Length = 201
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLVVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYRGQATDIEI 138
Query: 217 QVNEAV 222
E +
Sbjct: 139 HAQETL 144
>gi|399545473|ref|YP_006558781.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
BSs20148]
gi|399160805|gb|AFP31368.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
BSs20148]
Length = 211
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 86/144 (59%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGGS+ + ++I
Sbjct: 32 FDIFSRLLKERVIFMVGPVEDQMANLVVAQLLFLESENPDKDIHLYINSPGGSVSAGMSI 91
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G AAS A +LAGG G R +PN+R+M++QP G G D++
Sbjct: 92 YDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPNSRVMIHQPLGGYQGQATDIE 151
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
E + RH S L HT D
Sbjct: 152 IHTREILKIRHTLNSILAHHTGQD 175
>gi|379018956|ref|YP_005295190.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hlp#2]
gi|379712470|ref|YP_005300809.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia philipii
str. 364D]
gi|376329115|gb|AFB26352.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia philipii
str. 364D]
gi|376331536|gb|AFB28770.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hlp#2]
Length = 201
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 138
Query: 217 QVNEAV 222
E +
Sbjct: 139 HAQETL 144
>gi|400404572|ref|YP_006587547.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Carsonella ruddii HT isolate Thao2000]
gi|400363048|gb|AFP84118.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Carsonella ruddii HT isolate Thao2000]
Length = 192
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
LD+ S + + R+IF+ PI+ ++ ISQL+ L + + + DI++Y+N PGG + S L+I
Sbjct: 18 LDIFSKMLKERVIFLNGPIDDNISSLIISQLMYLDS-ENNKDIILYINSPGGVVSSGLSI 76
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD + +I KV T+C G AAS A++LA G KG R+A PN+R+M++QP + G DV+
Sbjct: 77 YDTIQFINSKVMTICTGQAASMGAVLLAAGAKGKRFAFPNSRVMIHQPLGYAQGQATDVE 136
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
E +I + + L +HTLND
Sbjct: 137 IHAREMMIIKKILCEILSIHTLND 160
>gi|149369719|ref|ZP_01889571.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit)
[unidentified eubacterium SCB49]
gi|149357146|gb|EDM45701.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit)
[unidentified eubacterium SCB49]
Length = 226
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 87/144 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G IN VA +QL+ LA++D DI +Y+N PGGS+Y+ L I
Sbjct: 49 MDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLASVDATRDIQIYINSPGGSVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +I P V T+C G+AAS A++L GEKG R + ++R+M++QP G+ G D++
Sbjct: 109 YDTMQFITPDVATICTGMAASMGAVLLCAGEKGKRSGLTHSRVMIHQPMGGAQGQASDIE 168
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
E + + + HT D
Sbjct: 169 ITAKEIITLKKELYEIISKHTGQD 192
>gi|126649375|ref|ZP_01721616.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
B14905]
gi|169826051|ref|YP_001696209.1| ATP-dependent Clp protease proteolytic subunit [Lysinibacillus
sphaericus C3-41]
gi|226706460|sp|B1HVR0.1|CLPP_LYSSC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|126593700|gb|EAZ87623.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
B14905]
gi|168990539|gb|ACA38079.1| ATP-dependent Clp protease proteolytic subunit 1 [Lysinibacillus
sphaericus C3-41]
Length = 197
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M IKPKV T+C G+AAS A +LA GE G R+A+PNA +M++QP G+ G +++
Sbjct: 79 DTMQIIKPKVQTICIGMAASMGAFLLAAGEPGKRFALPNAEVMIHQPLGGAQGQATEIE 137
>gi|15895898|ref|NP_349247.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum ATCC 824]
gi|337737851|ref|YP_004637298.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum DSM 1731]
gi|384459361|ref|YP_005671781.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum EA 2018]
gi|18202304|sp|P58276.1|CLPP_CLOAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|15025667|gb|AAK80587.1|AE007761_6 Protease subunits of ATP-dependent protease, ClpP [Clostridium
acetobutylicum ATCC 824]
gi|325510050|gb|ADZ21686.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum EA 2018]
gi|336292077|gb|AEI33211.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
acetobutylicum DSM 1731]
Length = 193
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++R+IF+G+ +N A ++QL+ L + D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRVIFLGEEVNDTTASLVVAQLLFLESEDPDKDIYLYINSPGGSITSGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M ++KP V T+C G+AAS + +L G G R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYVKPDVSTICIGMAASMGSFLLTAGAPGKRFALPNSEIMIHQPLGGFKGQATDI 136
>gi|237747781|ref|ZP_04578261.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
formigenes OXCC13]
gi|229379143|gb|EEO29234.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
formigenes OXCC13]
Length = 207
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 91/146 (62%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D DI +
Sbjct: 16 MIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPVMDQNANLIVAQLLFLESENPDKDISL 75
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP+V T+C G+AAS A +LA GEKG R+++PN+RIM+
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFIKPQVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMI 135
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ E + R
Sbjct: 136 HQPSGGAQGQATDIEIHAREILYLRE 161
>gi|428319265|ref|YP_007117147.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
gi|428242945|gb|AFZ08731.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oscillatoria
nigro-viridis PCC 7112]
Length = 202
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R+RI+F+GQ ++S +A ++QL+ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRDRIVFLGQQVDSDLANLIVAQLLFLDAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGS+ + + I+D M+ I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YLNSPGGSVTAGMGIFDTMNHIRPDVCTICLGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRRLNEHLANHT 156
>gi|78184632|ref|YP_377067.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
CC9902]
gi|124013818|sp|Q3AY04.1|CLPP1_SYNS9 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|78168926|gb|ABB26023.1| ATP-dependent Clp protease proteolytic subunit ClpP [Synechococcus
sp. CC9902]
Length = 197
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGASGQASDIRIQADE 140
>gi|442319289|ref|YP_007359310.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus
stipitatus DSM 14675]
gi|441486931|gb|AGC43626.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus
stipitatus DSM 14675]
Length = 206
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 88/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ L + D D DI +Y+N PGGS+ + +AIY
Sbjct: 21 DIYSRLLKDRIIMLGTEIDDDVANVIVAQLLFLESEDPDKDINIYINSPGGSVTAGMAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G AAS A++L G KG RYA+P++RIM++QP G G D++
Sbjct: 81 DTMQYVKPPVSTICVGQAASMGAVLLLAGTKGKRYALPSSRIMIHQPLGGVRGQATDIEI 140
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + + ++ HT
Sbjct: 141 QAKEILRMKAKLNELIVKHT 160
>gi|116256436|sp|Q3AJN8.2|CLPP2_SYNSC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
Length = 197
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGAQGQASDIRIQADE 140
>gi|114321437|ref|YP_743120.1| ATP-dependent Clp protease proteolytic subunit [Alkalilimnicola
ehrlichii MLHE-1]
gi|122311052|sp|Q0A6A7.1|CLPP_ALHEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|114227831|gb|ABI57630.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Alkalilimnicola ehrlichii MLHE-1]
Length = 214
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 86/143 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGG++ + LAIY
Sbjct: 34 DIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIHIYINSPGGAVTAGLAIY 93
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V TVC G AAS A++L GG KG RYA+PN+R+M++QP G G DV
Sbjct: 94 DTMQFIKPDVSTVCIGQAASMGALLLTGGTKGKRYALPNSRMMIHQPLGGFQGQATDVDI 153
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + R + HT D
Sbjct: 154 HAREILDMRDRLNRIMAHHTGQD 176
>gi|171915864|ref|ZP_02931334.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Verrucomicrobium spinosum DSM 4136]
Length = 237
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 85 LMPAVMTPGGPL----DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G + D+ S L ++RIIFIG PI+ VA I+QL+ L D DI +
Sbjct: 18 IIPTVIEAEGRMERAYDIYSRLLKDRIIFIGTPIDDQVANIVIAQLLFLQMQDPKKDINI 77
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++ V T C G+AAS A++L G KG RYA+PN+ IM+
Sbjct: 78 YINSPGGSVTAGLAIYDTMQFVTCDVNTYCIGIAASMGAVLLTAGTKGKRYALPNSHIMI 137
Query: 201 NQPQSGSGGHVEDVKRQVN 219
+Q G+ G DV+R V
Sbjct: 138 HQVSGGAQGTASDVERTVE 156
>gi|120599414|ref|YP_963988.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
W3-18-1]
gi|146292590|ref|YP_001183014.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
putrefaciens CN-32]
gi|386313267|ref|YP_006009432.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
putrefaciens 200]
gi|166214710|sp|A4Y5I2.1|CLPP_SHEPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214712|sp|A1RL89.1|CLPP_SHESW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|120559507|gb|ABM25434.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
W3-18-1]
gi|145564280|gb|ABP75215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
putrefaciens CN-32]
gi|319425892|gb|ADV53966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
putrefaciens 200]
Length = 202
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 84/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AIY
Sbjct: 27 DIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIY 86
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAI 146
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + +H L HT
Sbjct: 147 HAQEILGIKHKLNLMLAEHT 166
>gi|168004996|ref|XP_001755197.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693790|gb|EDQ80141.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 251
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 87/135 (64%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
LF+ RII G ++ +A ++QL+ L D + DI+MY+N PGGS+ + +AI+D M
Sbjct: 61 LFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIVMYVNSPGGSVTAGMAIFDTMRH 120
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q NE
Sbjct: 121 IRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQQTDIEIQANEI 180
Query: 222 VISRHVSLSFLLLHT 236
+ + +L HT
Sbjct: 181 LHHKANLNGYLAYHT 195
>gi|424777542|ref|ZP_18204505.1| ATP-dependent Clp protease proteolytic subunit [Alcaligenes sp.
HPC1271]
gi|422887494|gb|EKU29897.1| ATP-dependent Clp protease proteolytic subunit [Alcaligenes sp.
HPC1271]
Length = 195
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R RIIF+ P++ A ++QL+ L + + + DI +Y+N PGGS+Y+ LAIY
Sbjct: 19 DIYSRLLRERIIFLVGPVHDNSANLIVAQLLFLESENPEKDISLYINSPGGSVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP+V T+C G+AAS A +L+ G KG R A+PN+RIM++QP G+ G D++
Sbjct: 79 DTMQFVKPEVSTLCTGMAASMGAFLLSSGVKGKRLALPNSRIMIHQPSGGARGQASDIQI 138
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 139 QAKEILSLRE 148
>gi|393758662|ref|ZP_10347482.1| ATP-dependent Clp protease proteolytic subunit [Alcaligenes
faecalis subsp. faecalis NCIB 8687]
gi|393163098|gb|EJC63152.1| ATP-dependent Clp protease proteolytic subunit [Alcaligenes
faecalis subsp. faecalis NCIB 8687]
Length = 195
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R RIIF+ P++ A ++QL+ L + + + DI +Y+N PGGS+Y+ LAIY
Sbjct: 19 DIYSRLLRERIIFLVGPVHDNSANLIVAQLLFLESENPEKDISLYINSPGGSVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP+V T+C G+AAS A +L+ G KG R A+PN+RIM++QP G+ G D++
Sbjct: 79 DTMQFVKPEVSTLCTGMAASMGAFLLSSGVKGKRLALPNSRIMIHQPSGGARGQASDIQI 138
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 139 QAKEILSLRE 148
>gi|343520826|ref|ZP_08757795.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Parvimonas
sp. oral taxon 393 str. F0440]
gi|343397784|gb|EGV10318.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Parvimonas
sp. oral taxon 393 str. F0440]
Length = 192
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ +N +A ++QL+ L + D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFLSGEVNDQMADLIVAQLLFLESEDPKKDIQIYINSPGGSVSAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A +L G KG R+A+PNA IM++QP G+ G ED++
Sbjct: 79 DTMQYIKPDVSTICIGRAASMGAFLLTSGAKGKRFALPNADIMIHQPLGGAQGQAEDIRI 138
Query: 217 QVNEAVISR 225
Q + + R
Sbjct: 139 QAQKILQVR 147
>gi|238023189|ref|ZP_04603615.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
gi|237865572|gb|EEP66712.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
Length = 206
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L + RIIF+ P+N A ++QL+ L + + D D
Sbjct: 7 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKD 66
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 67 IYFYINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSR 126
Query: 198 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+M++QP G GG D++ E + + L HT
Sbjct: 127 VMIHQPLISGGLGGQASDIEIHARELLKLKEKLNQMLAEHT 167
>gi|298292194|ref|YP_003694133.1| ATP-dependent Clp protease proteolytic subunit ClpP [Starkeya
novella DSM 506]
gi|296928705|gb|ADH89514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Starkeya
novella DSM 506]
Length = 210
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 85/143 (59%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ P+ +A ++QL+ L + +I MY+N PGG + S LAIY
Sbjct: 28 DIYSRLLKERIIFLTGPVEDNMATLMVAQLLFLEAENPKKEISMYINSPGGVVTSGLAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS +++L GEKGMR+A+PNARIM++QP G G V D+
Sbjct: 88 DTMQFIKPAVSTLCIGQAASMGSLLLTAGEKGMRFALPNARIMVHQPSGGFQGQVTDIML 147
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + + + HT D
Sbjct: 148 HAQEILSLKKRLNEIYVKHTGQD 170
>gi|160936367|ref|ZP_02083736.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
BAA-613]
gi|158440650|gb|EDP18388.1| hypothetical protein CLOBOL_01259 [Clostridium bolteae ATCC
BAA-613]
Length = 193
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +N + A ++QL+ L + D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IK V T+C G+AAS A +L+GG KG R+A+PNA IM++QP G+ G ++K
Sbjct: 79 DTMNYIKCDVSTICIGMAASMGAFLLSGGAKGKRFALPNAEIMIHQPSGGAKGQATEIK 137
>gi|436837544|ref|YP_007322760.1| Endopeptidase Clp [Fibrella aestuarina BUZ 2]
gi|384068957|emb|CCH02167.1| Endopeptidase Clp [Fibrella aestuarina BUZ 2]
Length = 227
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 88/142 (61%)
Query: 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA 154
+D+ S L +RIIF+G ++ +A ++QL+ L + D DILMY+N PGGS+Y+ L
Sbjct: 47 EVDVFSRLMADRIIFMGMGVDDNIANIIVAQLLFLESADPRKDILMYINSPGGSVYAGLG 106
Query: 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
IYD M +++P V TVC +AAS A++LAGG G R A+P+AR+M++QP G+ G D+
Sbjct: 107 IYDTMQYVRPDVATVCTSLAASMGAVLLAGGAAGKRSALPHARVMIHQPSGGAQGQSVDI 166
Query: 215 KRQVNEAVISRHVSLSFLLLHT 236
+ E V R L H+
Sbjct: 167 EITAREIVKLREELYQILADHS 188
>gi|336430079|ref|ZP_08610035.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
gi|336001250|gb|EGN31395.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
Length = 200
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 6/131 (4%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N A ++QL+ L D + DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDTTASLVVAQLLFLEAEDTEKDIHLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G+AAS A +LAGG KG R A+PNA IM++QP G+ G +++
Sbjct: 79 DTMQFVKCDVSTICIGMAASMGAFLLAGGAKGKRMALPNAEIMIHQPSGGTQGQATEIE- 137
Query: 217 QVNEAVISRHV 227
+ ++H+
Sbjct: 138 -----ITAKHI 143
>gi|76262827|gb|ABA41488.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]
Length = 306
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 89/137 (64%)
Query: 100 SVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCM 159
S LF++RII G ++ +A ++QL+ L +D + DI+MY+N PGGS+ + +A++D M
Sbjct: 116 SQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAVFDTM 175
Query: 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVN 219
I+P V TVC G+AAS A +L+ G KG RY++PN+RIM++QP G+ G D+ Q N
Sbjct: 176 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQAN 235
Query: 220 EAVISRHVSLSFLLLHT 236
E + + S+L HT
Sbjct: 236 EMLHHKANLNSYLAYHT 252
>gi|157828616|ref|YP_001494858.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. 'Sheila Smith']
gi|378721430|ref|YP_005286317.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Colombia]
gi|378722779|ref|YP_005287665.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Arizona]
gi|378724135|ref|YP_005289019.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hauke]
gi|379016310|ref|YP_005292545.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Brazil]
gi|379017921|ref|YP_005294156.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hino]
gi|166214706|sp|A8GSH5.1|CLPP_RICRS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157801097|gb|ABV76350.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. 'Sheila Smith']
gi|376324834|gb|AFB22074.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Brazil]
gi|376326454|gb|AFB23693.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Colombia]
gi|376327803|gb|AFB25041.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Arizona]
gi|376330487|gb|AFB27723.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hino]
gi|376333150|gb|AFB30383.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hauke]
Length = 201
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 138
Query: 217 QVNEAV 222
E +
Sbjct: 139 HAQETL 144
>gi|301091655|ref|XP_002896007.1| ATP-dependent Clp protease proteolytic subunit, putative
[Phytophthora infestans T30-4]
gi|262095668|gb|EEY53720.1| ATP-dependent Clp protease proteolytic subunit, putative
[Phytophthora infestans T30-4]
Length = 221
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 91/145 (62%), Gaps = 4/145 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ +P G D+ S L + RI+F+ P+N +A +QL+ L + + + D+ M
Sbjct: 22 LVPMVLEQSPRGERVFDIYSRLLKERIVFVHGPVNDDMASLVTAQLLFLESENPEKDVHM 81
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S LAIYD M +I+PKV T+C G AAS +++LAGG G R A+PNARIM+
Sbjct: 82 YINSPGGIVSSGLAIYDTMQYIQPKVNTLCMGQAASMGSLLLAGGASGCRSALPNARIMI 141
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISR 225
+QP G+ G D+ Q E + R
Sbjct: 142 HQPSGGAQGMASDIAIQAEEIIKLR 166
>gi|28211967|ref|NP_782911.1| ATP-dependent Clp protease proteolytic subunit [Clostridium tetani
E88]
gi|28204410|gb|AAO36848.1| ATP-dependent clp protease proteolytic subunit [Clostridium tetani
E88]
Length = 202
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 77/118 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + +N + A ++QL+ L D D DI +Y+N PGGSI S +AIY
Sbjct: 27 DIYSRLLKDRIIMLSDQVNDVTASLIVAQLLFLEAEDPDKDIFLYINSPGGSITSGMAIY 86
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G G D+
Sbjct: 87 DTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGFQGQATDI 144
>gi|355676848|ref|ZP_09060344.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
citroniae WAL-17108]
gi|354813437|gb|EHE98048.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
citroniae WAL-17108]
Length = 193
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +N + A ++QL+ L + D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IK V T+C G+AAS A +LAGG KG R+A+PN+ IM++QP G+ G ++K
Sbjct: 79 DTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRFALPNSEIMIHQPSGGAKGQATEIK 137
>gi|313675245|ref|YP_004053241.1| ATP-dependent clp protease proteolytic subunit clpp [Marivirga
tractuosa DSM 4126]
gi|312941943|gb|ADR21133.1| ATP-dependent Clp protease proteolytic subunit ClpP [Marivirga
tractuosa DSM 4126]
Length = 222
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 82/121 (67%)
Query: 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA 154
+D+ S L +RIIF+G ++ +A +QL+ L ++D DI +Y+N PGGS+Y+ L
Sbjct: 46 EIDVFSRLIMDRIIFLGMQVDDNIANVITAQLLFLQSVDAKKDISLYINSPGGSVYAGLG 105
Query: 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
IYD M +I P VGT+C G+AAS A++LAGG + R A+P+ARIM++QP SG G D+
Sbjct: 106 IYDTMHYISPDVGTICTGLAASMGAVLLAGGAEKKRSALPHARIMIHQPMSGMQGQASDM 165
Query: 215 K 215
+
Sbjct: 166 E 166
>gi|239623656|ref|ZP_04666687.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47_FAA]
gi|239521687|gb|EEQ61553.1| ATP-dependent Clp protease [Clostridiales bacterium 1_7_47FAA]
Length = 193
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +N + A ++QL+ L + D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASLVVAQLLFLESEDPGKDIHLYINSPGGSVSAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IK V T+C G+AAS A +LAGG KG R+A+PN+ IM++QP G+ G ++K
Sbjct: 79 DTMNYIKCDVSTICIGMAASMGAFLLAGGAKGKRFALPNSEIMIHQPSGGAKGQATEIK 137
>gi|115374393|ref|ZP_01461676.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
aurantiaca DW4/3-1]
gi|310824399|ref|YP_003956757.1| ATP-dependent CLP protease proteolytic subunit 2 [Stigmatella
aurantiaca DW4/3-1]
gi|115368595|gb|EAU67547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
aurantiaca DW4/3-1]
gi|309397471|gb|ADO74930.1| ATP-dependent Clp protease proteolytic subunit 2 [Stigmatella
aurantiaca DW4/3-1]
Length = 200
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
DL S L ++RII +G PIN VA ++Q++ L + D + I +Y+N PGGS+ + LAIY
Sbjct: 18 DLYSRLLKDRIIMLGVPINDEVANVVVAQMLFLESEDPEKGINIYINSPGGSVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G AAS A++L G KG RYA+PNARIM++QP G+ G D+
Sbjct: 78 DTMQYVKCPVSTICVGQAASMGALLLLAGSKGKRYALPNARIMIHQPLGGAQGQATDIDI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + + ++ HT
Sbjct: 138 QAKEILRLKAYLNGIIVKHT 157
>gi|58038575|ref|YP_190539.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
oxydans 621H]
gi|67460438|sp|Q5FUR3.1|CLPP1_GLUOX RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|58000989|gb|AAW59883.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
oxydans 621H]
Length = 215
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 84/131 (64%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + RIIF+ P+ V+ +QL+ L +++ +I Y+N PGG + + LAI
Sbjct: 31 FDIFSRLLQERIIFLTGPVYDQVSSLICAQLLYLESVNPTKEISFYINSPGGVVSAGLAI 90
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +I+ V TVC G AAS +++LAGGEKG RYA+PNAR+M++QP G+ G D++
Sbjct: 91 YDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGHRYALPNARVMVHQPSGGAQGQASDIE 150
Query: 216 RQVNEAVISRH 226
Q E +I R
Sbjct: 151 IQAREILIIRQ 161
>gi|402703462|ref|ZP_10851441.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
helvetica C9P9]
Length = 201
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 85/143 (59%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 138
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + + + HT D
Sbjct: 139 HAQETLKIKKLINGLYSKHTGQD 161
>gi|315917132|ref|ZP_07913372.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
gonidiaformans ATCC 25563]
gi|317058772|ref|ZP_07923257.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
3_1_5R]
gi|313684448|gb|EFS21283.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium sp.
3_1_5R]
gi|313691007|gb|EFS27842.1| ATP-dependent Clp protease proteolytic subunit [Fusobacterium
gonidiaformans ATCC 25563]
Length = 195
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 78/113 (69%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R+RIIF+G +N VA ++QL+ L D DI++Y+N PGGS+ + LAI
Sbjct: 17 FDIFSRLLRDRIIFLGTEVNDQVAASLVAQLLYLEAEDPTKDIILYINSPGGSVSAGLAI 76
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSG 208
YD M+++KP + TVC G AAS A +L+ G KG R+A+ N+RIM++QP G+G
Sbjct: 77 YDTMNYVKPDIQTVCIGQAASMGAFLLSAGTKGKRFALENSRIMIHQPLGGTG 129
>gi|251797042|ref|YP_003011773.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
gi|247544668|gb|ACT01687.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. JDR-2]
Length = 194
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 81/118 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G I+ VA ++QL+ LA D D +I +Y+N PGGS + AIY
Sbjct: 20 DIYSRLLKDRIVFLGSAIDDQVANSIVAQLLFLAAEDPDKEISLYINSPGGSTTAGFAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKP+V T+C G+AAS AAI+L G KG R+A+P++ +M++QP G+ G D+
Sbjct: 80 DTMQYIKPEVHTICVGMAASFAAILLLSGAKGKRFALPSSEVMIHQPHGGAQGQASDI 137
>gi|411118195|ref|ZP_11390576.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Oscillatoriales cyanobacterium JSC-12]
gi|410711919|gb|EKQ69425.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Oscillatoriales cyanobacterium JSC-12]
Length = 207
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L D + DI +
Sbjct: 7 MIPTVIEQSGRGERAFDIYSRLLRERIVFLGQQVDSDLANLVVAQLLFLDAEDPEKDIYL 66
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 67 YINSPGGSVTAGMGIFDTMKQIRPDVCTICLGLAASMGAFLLSAGAKGKRMSLPHSRIMI 126
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 127 HQPLGGAQGQATDIEIQAKEILYHKQRLNELLAEHT 162
>gi|406937069|gb|EKD70636.1| ATP-dependent Clp protease proteolytic subunit [uncultured
bacterium]
Length = 207
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 85/141 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L ++R+IF+G PI+ VA ++QL+ L + + D DI +Y+N PGG + + LAI
Sbjct: 28 FDIYSRLLKDRVIFLGGPIDDYVANLIVAQLLFLESENPDKDISIYINSPGGVVTAGLAI 87
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD + +IKP V T+C G AAS A++LA G G RY +PNAR+M++QP G G D+
Sbjct: 88 YDTIQFIKPAVSTMCIGQAASMGALLLAAGTAGKRYCLPNARVMIHQPLGGVQGQASDIA 147
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 148 IHAEETLKIRTRLNQILAHHT 168
>gi|328948166|ref|YP_004365503.1| ATP-dependent Clp protease proteolytic subunit [Treponema
succinifaciens DSM 2489]
gi|328448490|gb|AEB14206.1| ATP-dependent Clp protease proteolytic subunit [Treponema
succinifaciens DSM 2489]
Length = 203
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G DL S L ++RIIF+ I A ++Q++ L + + + DI M
Sbjct: 8 LIPTVIERSGNGERAYDLYSRLLKDRIIFVDGEIRDETADLIVAQILYLESENPEKDISM 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +++ + T+C G AAS AIILAGG G RYA+P++R+M+
Sbjct: 68 YINSPGGSVTAGLAIYDTMQYVRCDIQTICMGQAASMGAIILAGGTIGKRYALPSSRVMI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D+ Q E + +S+ +L + T
Sbjct: 128 HQPWGGTQGQESDIAIQAKEIGRLKKLSIKYLSMQT 163
>gi|319953653|ref|YP_004164920.1| ATP-dependent clp protease proteolytic subunit [Cellulophaga
algicola DSM 14237]
gi|319422313|gb|ADV49422.1| ATP-dependent Clp protease proteolytic subunit [Cellulophaga
algicola DSM 14237]
Length = 226
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 88/144 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G IN VA +QL+ L + D DI +Y+N PGGS+Y+ L I
Sbjct: 49 MDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESADASKDIQIYINSPGGSVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS A++L GEKG R + ++R+M++QP G+ G D++
Sbjct: 109 YDTMQYIKPDVATICTGMAASMGAVLLCAGEKGKRSGLTHSRVMIHQPMGGAQGQASDIE 168
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
E + + + LH+ +D
Sbjct: 169 ITAREILKLKDELYEIIALHSNHD 192
>gi|225010439|ref|ZP_03700910.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
gi|225005268|gb|EEG43219.1| Endopeptidase Clp [Flavobacteria bacterium MS024-3C]
Length = 226
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 88/145 (60%), Gaps = 9/145 (6%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G IN VA +QL+ L + D DI +Y+N PGGS+Y+ L I
Sbjct: 49 MDVFSRLMMDRIIFLGTGINDQVANIVQAQLLFLESADAAKDIQIYINSPGGSVYAGLGI 108
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS AA++L GEKG R + ++R+M++QP SG+ G D++
Sbjct: 109 YDTMQFIKPDVATICTGIAASMAAVLLCAGEKGKRSGLTHSRVMIHQPLSGAQGQASDIE 168
Query: 216 RQVNE---------AVISRHVSLSF 231
E +IS H +F
Sbjct: 169 IAAKEVLKIKDELYTIISNHSGQTF 193
>gi|254514393|ref|ZP_05126454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR5-3]
gi|219676636|gb|EED33001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR5-3]
Length = 213
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R++F+ + +A ++QL+ L + + D DI +Y+N PGGS+ + L+IY
Sbjct: 33 DIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGLSIY 92
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP + T+C G AAS A +L+GG KG RY +PNAR M++QP G+ G D+
Sbjct: 93 DTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCLPNARTMIHQPSGGAQGQATDIDI 152
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E +I R + HT
Sbjct: 153 QAKEILIIRERLNRLMAEHT 172
>gi|126727090|ref|ZP_01742927.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Rhodobacterales bacterium HTCC2150]
gi|126703518|gb|EBA02614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Rhodobacterales bacterium HTCC2150]
Length = 209
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 79/118 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ P++ +A ++QL+ L + +I MY+N PGG + S L+IY
Sbjct: 28 DIFSRLLKERIIFVSGPVHDEMATTIVAQLLFLEADNPTKEIAMYINSPGGVVTSGLSIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKPKV TVC G AAS +++LA GE GMRY++PN+RIM++QP G G D+
Sbjct: 88 DTMQYIKPKVSTVCIGQAASMGSLLLAAGEPGMRYSLPNSRIMVHQPSGGYQGQATDI 145
>gi|113970830|ref|YP_734623.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
MR-4]
gi|123029527|sp|Q0HHA1.1|CLPP_SHESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|113885514|gb|ABI39566.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
MR-4]
Length = 202
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 81/131 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AI
Sbjct: 26 FDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAI 85
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 86 YDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIA 145
Query: 216 RQVNEAVISRH 226
E + +H
Sbjct: 146 IHAQEILGIKH 156
>gi|157803694|ref|YP_001492243.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
canadensis str. McKiel]
gi|379022874|ref|YP_005299535.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
canadensis str. CA410]
gi|166214705|sp|A8EYM5.1|CLPP_RICCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157784957|gb|ABV73458.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
canadensis str. McKiel]
gi|376323812|gb|AFB21053.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
canadensis str. CA410]
Length = 201
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 84/143 (58%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + +A ++QL+ L + DI MY+N PGG + + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S + +L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRIMIHQPSGGYQGQATDIEI 138
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + + + HT D
Sbjct: 139 HAQETLKIKRLLNELYSKHTGQD 161
>gi|78212970|ref|YP_381749.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
CC9605]
gi|78197429|gb|ABB35194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. CC9605]
Length = 218
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 22 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 81
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 82 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 141
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 142 HQPLGGAQGQASDIRIQADE 161
>gi|339626863|ref|YP_004718506.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sulfobacillus
acidophilus TPY]
gi|379008747|ref|YP_005258198.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfobacillus
acidophilus DSM 10332]
gi|339284652|gb|AEJ38763.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sulfobacillus
acidophilus TPY]
gi|361055009|gb|AEW06526.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfobacillus
acidophilus DSM 10332]
Length = 203
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G I+ VA ++QL+ L + D + DI +Y+N PGGS+ + LAIY
Sbjct: 20 DIYSRLLKERIIFLGSAIDDDVANLVVAQLLFLESDDPEKDINLYINSPGGSVSAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS-GGHVEDVK 215
D M I+P V T+C G+AAS A++L GG G R+A+PNAR+M+++P GG V D+
Sbjct: 80 DTMQLIRPDVSTICVGLAASMGALLLTGGAAGKRFALPNARVMIHEPWVDRMGGKVTDLD 139
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q+ E + +R L H+
Sbjct: 140 IQMRELLRNRETLAKILAHHS 160
>gi|307102787|gb|EFN51055.1| hypothetical protein CHLNCDRAFT_141566 [Chlorella variabilis]
Length = 258
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 65 DFCSTEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAIS 124
DF S + +I PP P V+ + S LF RI+ +G P++ +A ++
Sbjct: 49 DFGSRVAAENVIYAGQGPPPPSPMVVERFQ--QVISQLFSQRIVRLGGPVDDDMANLIVA 106
Query: 125 QLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAG 184
QL+ L + D + DI +Y+N PGGS+ + +A++D M I+P V TVC G+AAS A +LA
Sbjct: 107 QLLYLDSADPNRDITLYINSPGGSVTAGMAVFDTMRHIRPNVSTVCVGLAASMGAFLLAS 166
Query: 185 GEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
G +G RY++PN+RIM++QP G+ G D++ Q NE
Sbjct: 167 GHQGKRYSLPNSRIMIHQPLGGAQGQAADIEIQANE 202
>gi|307150040|ref|YP_003885424.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7822]
gi|306980268|gb|ADN12149.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cyanothece
sp. PCC 7822]
Length = 203
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R+RI+F+GQ + + +A ++QL+ L + D D DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRDRIVFLGQEVTNDLANLIVAQLLFLESEDPDKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLNAGAKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q E
Sbjct: 121 HQPLGGAQGQATDIEIQAKE 140
>gi|395219742|ref|ZP_10402555.1| ATP-dependent clp protease proteolytic subunit clpp [Pontibacter
sp. BAB1700]
gi|394453842|gb|EJF08647.1| ATP-dependent clp protease proteolytic subunit clpp [Pontibacter
sp. BAB1700]
Length = 233
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 81/121 (66%)
Query: 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA 154
+D+ S L +RIIF+G ++ +A +QL+ L + D DIL+Y+N PGGS+Y+ L
Sbjct: 55 EIDVFSRLIMDRIIFLGTQVDDFIANIITAQLLFLESADAKKDILLYINSPGGSVYAGLG 114
Query: 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
IYD M ++ P V T+C G+AAS A++LAGG K R A+P++RIM++QP G+ G D+
Sbjct: 115 IYDTMQYVNPDVATICTGLAASMGAVLLAGGAKNKRSALPHSRIMIHQPMGGAQGQASDI 174
Query: 215 K 215
+
Sbjct: 175 E 175
>gi|406836610|ref|ZP_11096204.1| endopeptidase Clp [Schlesneria paludicola DSM 18645]
Length = 201
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G +D+ S L R+RII +G IN V+ ++QL+ L D ADI M
Sbjct: 4 LVPYVIEKNGRDERAMDIYSRLLRDRIILLGSAINDDVSNSIVAQLLYLQFEDSKADIHM 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGSI S +AIYD M +I V T C G AS A++L G KG RYA+PN+RIM+
Sbjct: 64 YINSPGGSITSGMAIYDTMQFIACDVATYCLGQCASMGAMLLTAGTKGKRYALPNSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP +G G +++ E + ++ +L HT
Sbjct: 124 HQPLAGMQGTAVELEIHAKEVLRTKRRMNELMLKHT 159
>gi|89900346|ref|YP_522817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodoferax
ferrireducens T118]
gi|89345083|gb|ABD69286.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodoferax
ferrireducens T118]
Length = 209
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 87/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ P+N VA ++QL+ L + + D DI Y+N PGGS+ + +AI+
Sbjct: 34 DIYSRLLKERVIFLVGPVNDYVANLVVAQLLFLESDNPDKDISFYINSPGGSVSAGMAIF 93
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M+++KP V T+C G+AAS A +LA G KG R+++PN+++M++QP GS G +++
Sbjct: 94 DTMNFVKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKVMIHQPSGGSQGQATEIEI 153
Query: 217 QVNEAVISRH 226
Q E + +R
Sbjct: 154 QAREILKTRE 163
>gi|162606094|ref|XP_001713562.1| ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
gi|13794482|gb|AAK39857.1|AF165818_65 ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
Length = 233
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 103/173 (59%), Gaps = 12/173 (6%)
Query: 63 EKDFCSTEHSYKIISGKNDNPPLMP------AVMTPGGP----LDLSSVLFRNRIIFIGQ 112
+K+F +H+ + S N +MP A PG P +D+ + L+R RIIF+GQ
Sbjct: 12 QKNFYKKKHN--VTSNNLINIKMMPIGVPKVAYRVPGSPSADWVDIYNRLYRERIIFLGQ 69
Query: 113 PINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFG 172
I+ +A + I+ ++ L + D I MY+N PGGS+ S LA+YD M IK +V T+ G
Sbjct: 70 EIDDEIANQIIAVMLYLDSEDNSKPIYMYINSPGGSVISGLAMYDTMRHIKSEVITINVG 129
Query: 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISR 225
+AAS ++ ILA GEKG R A+P++RIM++QP G+ G D++ + + + R
Sbjct: 130 LAASMSSFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIEVEAQQILKIR 182
>gi|402494483|ref|ZP_10841224.1| ATP-dependent Clp protease proteolytic subunit 2 [Aquimarina
agarilytica ZC1]
Length = 193
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 89/141 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G IN +A +QL+ L + D + DI +Y+N PGG +Y+ L I
Sbjct: 18 MDVFSRLMMDRIIFLGTGINDQIANIVQAQLLFLESTDSNKDIQIYINSPGGGVYAGLGI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS A+++ G+KG R A+P++RIM++QP G+ G D++
Sbjct: 78 YDTMQFIKPDVATICTGMAASMGAVLMCAGQKGKRSALPHSRIMIHQPLGGAQGQASDIE 137
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E +I + + + H+
Sbjct: 138 ITAREILILKEELYNIIAKHS 158
>gi|117921102|ref|YP_870294.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
ANA-3]
gi|166214711|sp|A0KYL9.1|CLPP_SHESA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|117613434|gb|ABK48888.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
ANA-3]
Length = 202
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 81/131 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + RIIF+ + +A ++QL+ L + D DI +Y+N PGGS+ + +AI
Sbjct: 26 FDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAI 85
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V TVC G AAS A +LAGGEKG R+ +PN+R+M++QP G G D+
Sbjct: 86 YDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIA 145
Query: 216 RQVNEAVISRH 226
E + +H
Sbjct: 146 IHAQEILGIKH 156
>gi|374295111|ref|YP_005045302.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
clariflavum DSM 19732]
gi|359824605|gb|AEV67378.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
clariflavum DSM 19732]
Length = 194
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 81/130 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + IN A ++Q++ L D D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIFSRLLKDRIIVLSDEINDATASLVVAQMLFLEAEDPDKDIQLYINSPGGSVSAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D+K
Sbjct: 79 DTMQYVKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGARGQATDIKI 138
Query: 217 QVNEAVISRH 226
+ + +R
Sbjct: 139 HADHIIKTRE 148
>gi|348673459|gb|EGZ13278.1| hypothetical protein PHYSODRAFT_351880 [Phytophthora sojae]
Length = 226
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 91/145 (62%), Gaps = 4/145 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ +P G D+ S L + RI+F+ P+N +A +QL+ L + + + D+ M
Sbjct: 27 LVPMVLEQSPRGERVFDIYSRLLKERIVFVHGPVNDDMASLVTAQLLFLESENPEKDVYM 86
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S LAIYD M +I+PKV T+C G AAS +++LAGG G R A+PN+RIM+
Sbjct: 87 YINSPGGIVSSGLAIYDTMQYIQPKVNTLCMGQAASMGSLLLAGGTPGCRSALPNSRIMI 146
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISR 225
+QP G+ G D+ Q E + R
Sbjct: 147 HQPSGGAQGMASDIAIQAEEIIKLR 171
>gi|260438109|ref|ZP_05791925.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
crossotus DSM 2876]
gi|292809590|gb|EFF68795.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Butyrivibrio
crossotus DSM 2876]
Length = 194
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ + + A ++QL+ L D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSANIVVAQLLFLEAEDPGKDIQLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IK V T+C G+AAS A +L+GG KG R+A+PNA IM++QP GS G D+K
Sbjct: 79 DTMNYIKSDVSTICIGMAASMGAFLLSGGTKGKRFALPNAEIMIHQPSGGSRGMASDMK 137
>gi|167766384|ref|ZP_02438437.1| hypothetical protein CLOSS21_00888 [Clostridium sp. SS2/1]
gi|317496812|ref|ZP_07955142.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
gi|429763602|ref|ZP_19295949.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaerostipes hadrus DSM 3319]
gi|167711975|gb|EDS22554.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium sp. SS2/1]
gi|291559217|emb|CBL38017.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[butyrate-producing bacterium SSC/2]
gi|316895824|gb|EFV17976.1| Clp protease [Lachnospiraceae bacterium 5_1_63FAA]
gi|429178111|gb|EKY19395.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaerostipes hadrus DSM 3319]
Length = 193
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +N + A +SQL+ L + D D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVTAGLVVSQLLFLESEDPDKDINLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M ++K V T+C G+AAS A +L+GG KG R A+PNA IM++QP G+ G +++
Sbjct: 79 DTMQYVKCDVSTMCMGMAASMGAFLLSGGTKGKRLALPNAEIMIHQPSGGAQGQATEIE 137
>gi|154506030|ref|ZP_02042768.1| hypothetical protein RUMGNA_03572 [Ruminococcus gnavus ATCC 29149]
gi|336433385|ref|ZP_08613205.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 2_1_58FAA]
gi|153793529|gb|EDN75949.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Ruminococcus gnavus ATCC 29149]
gi|336016316|gb|EGN46103.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 193
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 80/118 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G+ +N + A ++QL+ L D + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFLGEEVNDVSASVIVAQLLFLEADDPNKDIQLYINSPGGSVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IK V TVC G+AAS A +L+GG KG R+A+PNA IM++QP G+ G ++
Sbjct: 79 DTMQYIKCDVSTVCIGMAASMGAFLLSGGAKGKRFALPNAEIMIHQPSGGAQGQATEI 136
>gi|261404070|ref|YP_003240311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. Y412MC10]
gi|329927993|ref|ZP_08281997.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF5]
gi|261280533|gb|ACX62504.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
sp. Y412MC10]
gi|328938097|gb|EGG34494.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF5]
Length = 198
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N +VA I+Q++ L+ D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G KG RY +PN+ IM++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYGLPNSEIMIHQPLGGAQGQATDIE 137
>gi|88705172|ref|ZP_01102884.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
litoralis KT71]
gi|88700867|gb|EAQ97974.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
litoralis KT71]
Length = 206
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R++F+ + +A ++QL+ L + + D DI +Y+N PGGS+ + L+IY
Sbjct: 26 DIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGLSIY 85
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP + T+C G AAS A +L+GG KG RY +PNAR M++QP G+ G D+
Sbjct: 86 DTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCLPNARTMIHQPSGGAQGQATDIDI 145
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E +I R + HT
Sbjct: 146 QAKEILIIRERLNRLMAEHT 165
>gi|73541074|ref|YP_295594.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
JMP134]
gi|124013825|sp|Q472D3.1|CLPP_RALEJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|72118487|gb|AAZ60750.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ralstonia
eutropha JMP134]
Length = 216
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFLVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++KP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFVKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRE 170
>gi|380486366|emb|CCF38751.1| ATP-dependent Clp protease proteolytic subunit [Colletotrichum
higginsianum]
Length = 266
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 91/145 (62%), Gaps = 11/145 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+ + I+ V+ ++QL+ L + D I MY+N PGGS+ S LAIY
Sbjct: 67 DIFSKLLQERIVCLNGAIDDTVSASIVAQLLWLESDSPDKAITMYINSPGGSVSSGLAIY 126
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVED--- 213
D M++IK V TVC G A+S AA++L GGE G RYA+P++ +M++QP G+ G D
Sbjct: 127 DTMTYIKSPVSTVCLGAASSMAALLLTGGEAGKRYALPHSSVMIHQPLGGTQGQASDILI 186
Query: 214 -------VKRQVNEAVISRHVSLSF 231
++RQ+NE ++ RHV+ SF
Sbjct: 187 YANQIQRIRRQINE-IMKRHVNKSF 210
>gi|358062799|ref|ZP_09149437.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
hathewayi WAL-18680]
gi|356698982|gb|EHI60504.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
hathewayi WAL-18680]
Length = 193
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ + + A ++QL+ L + D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSASLVVAQLLFLESEDPSKDINLYINSPGGSVSAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IK V TVC G+AAS A +LAGG KG R+A+PNA IM++QP G+ G +++
Sbjct: 79 DTMNYIKCDVSTVCMGMAASMGAFLLAGGTKGKRFALPNADIMIHQPSGGAQGQATEIQI 138
Query: 217 QVNEAVISRHVSLSFLL 233
V E +++ L+ +L
Sbjct: 139 -VAEKILATKKKLNEIL 154
>gi|302833543|ref|XP_002948335.1| hypothetical protein VOLCADRAFT_80119 [Volvox carteri f.
nagariensis]
gi|300266555|gb|EFJ50742.1| hypothetical protein VOLCADRAFT_80119 [Volvox carteri f.
nagariensis]
Length = 256
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 76 ISGKNDNPPLMPAVMTPGGPLDLS------SVLFRNRIIFIGQPINSMVAQRAISQLVTL 129
+S ++ +PP++ P PL + S LF+ RI+ +G ++ +A ++QL+ L
Sbjct: 42 VSSRDPHPPVICQGPPPPNPLVIERFQGVVSQLFQQRIVRLGGAVDDDMANLLVAQLLYL 101
Query: 130 ATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGM 189
++D DI MY+N PGGS+ + +A++D M I+P V T C G+AAS A IL G++G
Sbjct: 102 DSVDPKRDITMYVNSPGGSVTAGMAVFDTMRHIRPDVSTCCIGMAASMGAFILTSGQQGK 161
Query: 190 RYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
RY++PN+RIM++QP G+ G D++ Q NE
Sbjct: 162 RYSLPNSRIMIHQPLGGAQGQATDIEIQANE 192
>gi|404379126|ref|ZP_10984194.1| ATP-dependent Clp protease proteolytic subunit [Simonsiella
muelleri ATCC 29453]
gi|294483471|gb|EFG31156.1| ATP-dependent Clp protease proteolytic subunit [Simonsiella
muelleri ATCC 29453]
Length = 206
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 6/161 (3%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L + RIIF+ P+N A ++QL+ L + + D D
Sbjct: 7 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKD 66
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I Y+N PGGS+ + ++I+D M++IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 67 IYFYINSPGGSVSAGMSIFDTMNFIKPDVQTLCLGQAASMGAFLLSAGAKGKRFALPNSR 126
Query: 198 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
IM++QP G GG D++ E + + + L HT
Sbjct: 127 IMIHQPLISGGLGGQASDIEIHARELIKLKEKLNNLLAKHT 167
>gi|404496730|ref|YP_006720836.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
metallireducens GS-15]
gi|418065321|ref|ZP_12702695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
metallireducens RCH3]
gi|90101408|sp|Q39UH2.1|CLPP_GEOMG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|78194335|gb|ABB32102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
metallireducens GS-15]
gi|373562499|gb|EHP88710.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
metallireducens RCH3]
Length = 199
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G PI+ VA I+QL+ L D D DI +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + +AIYD M +IK V T+C G AAS A++L+GGEKG R+++ ++RIM+
Sbjct: 62 YINSPGGVVTAGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLTHSRIMI 121
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ E
Sbjct: 122 HQPLGGFQGQATDIHIHAQE 141
>gi|395762551|ref|ZP_10443220.1| ATP-dependent Clp protease proteolytic subunit [Janthinobacterium
lividum PAMC 25724]
Length = 205
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 92/145 (63%), Gaps = 4/145 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R+IF+ P+N +A ++QL+ L + + + +I +
Sbjct: 14 LVPMVVEQSGRGERSYDIYSRLLKERLIFMVGPVNDQMANLVVAQLLFLESENPEKEISL 73
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA G KG R+++PN+RIM+
Sbjct: 74 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMI 133
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISR 225
+QP GS G D++ Q E + R
Sbjct: 134 HQPSGGSQGMASDIEIQAREILYLR 158
>gi|315644534|ref|ZP_07897666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
vortex V453]
gi|315280041|gb|EFU43338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
vortex V453]
Length = 198
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N +VA I+Q++ L+ D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIIFLGSDVNDVVANSIIAQMLFLSAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G KG RY +PN+ IM++QP G+ G D++
Sbjct: 79 DTMQFIKPDVSTICVGMAASMGAFLLNAGAKGKRYGLPNSEIMIHQPLGGAQGQATDIE 137
>gi|77455725|gb|ABA86601.1| chloroplast clp protease P [Isochrysis galbana]
Length = 277
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 93/151 (61%)
Query: 86 MPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCP 145
+P V + +D+ S L ++RI+ +GQ ++ VA ++QL+ LA D DI MY+N P
Sbjct: 78 LPMVGSGDDKMDVMSRLLKDRILLLGQGVDDEVANLLVAQLLYLANEDARKDITMYINSP 137
Query: 146 GGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
GGS+ + +AI+D M ++ + TVCFG AAS A +L G+KG R ++PN+RIM++QP
Sbjct: 138 GGSVSAGMAIFDTMQYVPCDLNTVCFGTAASMGAFLLGAGQKGKRRSLPNSRIMIHQPLG 197
Query: 206 GSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
G+ G D++ Q E + R + ++ +T
Sbjct: 198 GAQGQAADIEIQAKEILFIRALLCEYIADYT 228
>gi|60389777|sp|Q891J7.2|CLPP_CLOTE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 194
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 77/118 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + +N + A ++QL+ L D D DI +Y+N PGGSI S +AIY
Sbjct: 19 DIYSRLLKDRIIMLSDQVNDVTASLIVAQLLFLEAEDPDKDIFLYINSPGGSITSGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G G D+
Sbjct: 79 DTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGFQGQATDI 136
>gi|322418659|ref|YP_004197882.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
M18]
gi|320125046|gb|ADW12606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
M18]
Length = 199
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 95/161 (59%), Gaps = 15/161 (9%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G I+ VA I+QL+ L D D DI +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + + +AIYD M +IK V T+C G AAS A +L+GGEKG R+++ N+RIM+
Sbjct: 62 YINSPGGVVTAGMAIYDTMRYIKAPVSTICIGQAASMGAFLLSGGEKGKRFSLANSRIMI 121
Query: 201 NQPQSGSGGHVEDV----------KRQVNEAVISRHVSLSF 231
+QP G G D+ K Q+NE +++ H SF
Sbjct: 122 HQPLGGFQGQATDIHIHAKEILRMKDQLNE-LLAEHTGQSF 161
>gi|168048812|ref|XP_001776859.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671715|gb|EDQ58262.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 87/135 (64%)
Query: 102 LFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW 161
LF+ RII G ++ +A ++QL+ L D + DI+MY+N PGGS+ + +AI+D M
Sbjct: 75 LFQQRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIVMYVNSPGGSVTAGMAIFDTMRH 134
Query: 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA 221
I+P V TVC G+AAS A +L+GG KG RY++PN+RIM++QP G+ G D++ Q NE
Sbjct: 135 IRPDVSTVCVGLAASMGAFLLSGGTKGKRYSLPNSRIMIHQPLGGAQGQQTDIEIQANEI 194
Query: 222 VISRHVSLSFLLLHT 236
+ + +L HT
Sbjct: 195 LHHKANLNGYLAYHT 209
>gi|256828014|ref|YP_003156742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfomicrobium baculatum DSM 4028]
gi|256577190|gb|ACU88326.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfomicrobium baculatum DSM 4028]
Length = 198
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 86/140 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ +G PI+ VA +QL+ L + + + I MY+N PGG++ + +AIY
Sbjct: 20 DIYSRLLKDRIVLLGTPIDDHVANSICAQLLFLESENPEKQIYMYINSPGGAVTAGMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I V T+C G AAS AA++LA GEKGMRY +P++RIM++QP G G D+
Sbjct: 80 DTMQYISAPVATLCIGQAASMAAVLLAAGEKGMRYTLPHSRIMIHQPMGGFQGQATDIAI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R L HT
Sbjct: 140 QAKEIIRLRGELNGILANHT 159
>gi|384207099|ref|YP_005592821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
afzelii PKo]
gi|342856983|gb|AEL69831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
afzelii PKo]
Length = 194
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D + DI +
Sbjct: 4 LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIYL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LA G KG R ++ +RIM+
Sbjct: 64 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAAGAKGKRESLTYSRIMI 123
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 124 HQPWGGISGQASDINIQANE 143
>gi|22298052|ref|NP_681299.1| ATP-dependent Clp protease proteolytic subunit [Thermosynechococcus
elongatus BP-1]
gi|34222557|sp|Q8DLI2.1|CLPP1_THEEB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|22294230|dbj|BAC08061.1| ATP-dependent Clp protease proteolytic subunit 1
[Thermosynechococcus elongatus BP-1]
Length = 229
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 88/147 (59%), Gaps = 6/147 (4%)
Query: 96 LDLSSVLFRNRIIFIG------QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSI 149
D+ S L R RIIF+G + I+ VA ++QL+ L D + DI +Y+N PGGS+
Sbjct: 43 FDIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLFLDAEDPEKDIYLYINSPGGSV 102
Query: 150 YSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG 209
+ +AIYD M I+P V T+CFG+AAS A +L+GG G R A+PNARIM++QP G+ G
Sbjct: 103 TAGMAIYDTMKHIRPDVCTLCFGLAASMGAFLLSGGTPGKRMALPNARIMIHQPLGGAQG 162
Query: 210 HVEDVKRQVNEAVISRHVSLSFLLLHT 236
D++ Q E + + L HT
Sbjct: 163 QAVDIEIQAREILYHKRKLNELLSQHT 189
>gi|260889843|ref|ZP_05901106.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
hofstadii F0254]
gi|260860449|gb|EEX74949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptotrichia
hofstadii F0254]
Length = 208
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Query: 78 GKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 133
G N+ P V+ G D+ S L ++RIIF+ + +A ++QL+ L D
Sbjct: 14 GGNNMSAYSPVVIENDGRGERSYDIYSRLLKDRIIFVSGEVEDGMANAIVAQLLFLDAQD 73
Query: 134 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 193
+ DI+MY+N PGG I + LAIYD M IK V TVC G AAS A++LA G KG RY++
Sbjct: 74 NEKDIVMYINSPGGVITAGLAIYDTMRHIKSDVSTVCVGQAASMGAVLLAAGAKGKRYSL 133
Query: 194 PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFL 232
PN+RIM++QP G+ G D++ Q E + ++ L
Sbjct: 134 PNSRIMIHQPLGGARGQATDIQIQAKEIERMKEITSKIL 172
>gi|114771109|ref|ZP_01448549.1| Protease subunit of ATP-dependent Clp protease [Rhodobacterales
bacterium HTCC2255]
gi|114548391|gb|EAU51277.1| Protease subunit of ATP-dependent Clp protease [alpha
proteobacterium HTCC2255]
Length = 204
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 81/125 (64%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + RIIF+ P++ ++ ++QL+ L + DI MY+N PGG + + +AI
Sbjct: 27 FDIFSRLLKERIIFVSGPVHDGMSTLIVAQLLFLEAENPKKDISMYINSPGGVVTAGMAI 86
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +I+PKV T+C G AAS +++LA GEKGMR+A+PNAR+M++QP G G D+
Sbjct: 87 YDTMQYIRPKVSTLCVGQAASMGSLLLAAGEKGMRFALPNARVMVHQPSGGFSGQASDIA 146
Query: 216 RQVNE 220
E
Sbjct: 147 LHAKE 151
>gi|134300401|ref|YP_001113897.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
reducens MI-1]
gi|172044337|sp|A4J7L9.1|CLPP_DESRM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|134053101|gb|ABO51072.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Desulfotomaculum reducens MI-1]
Length = 195
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 83/140 (59%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI+ +A I+Q + L D + DI +Y+N PGG + + LAIY
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPGGVVTAGLAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS + +LA G G RYA+P ARIM++QP G G D+
Sbjct: 80 DTMQYIKPAVSTICLGQAASMGSFLLAAGAPGKRYALPMARIMIHQPLGGVQGQATDIDI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + + + L HT
Sbjct: 140 HAKEILRMKDLLNDRLAHHT 159
>gi|429749081|ref|ZP_19282226.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 332 str. F0381]
gi|429169049|gb|EKY10834.1| endopeptidase Clp [Capnocytophaga sp. oral taxon 332 str. F0381]
Length = 219
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 93/154 (60%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G +N VA +QL+ L ++D DI +Y+
Sbjct: 31 PYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIITAQLLFLESVDSGKDIQIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+Y+ L IYD M +IKP V T+C G+AAS +A++L G +G R A+P++R+M++Q
Sbjct: 91 NSPGGSVYAGLGIYDTMQFIKPDVATICTGMAASMSAVLLCAGAQGKRSALPHSRVMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
P G+ G D++ + E + ++ + HT
Sbjct: 151 PSGGAQGVASDMEINLKEMLKIKNELYEIIAKHT 184
>gi|394987652|ref|ZP_10380491.1| ATP-dependent Clp protease proteolytic subunit [Sulfuricella
denitrificans skB26]
gi|393792871|dbj|GAB70130.1| ATP-dependent Clp protease proteolytic subunit [Sulfuricella
denitrificans skB26]
Length = 209
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 4/159 (2%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N ++P V+ G D+ S L + R+IF+ P+N + A ++Q++ L + + D D
Sbjct: 11 NLGMVPMVIEQSGRGERAFDIYSRLLKERVIFLVGPVNDVTANLIVAQMLFLESDNPDKD 70
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I Y+N PGGS+ + ++IYD M +IKP V T+C G AAS + +LA G KG R+ +PN+R
Sbjct: 71 IFFYINSPGGSVSAGMSIYDTMQFIKPDVSTLCLGQAASMGSFLLAAGAKGKRFCLPNSR 130
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+M++QP G G D++ E + R + L HT
Sbjct: 131 VMIHQPSGGFQGQASDIEIHAKEILYLRQRLNTMLAQHT 169
>gi|381400295|ref|ZP_09925271.1| ATP-dependent Clp protease proteolytic subunit [Kingella kingae
PYKK081]
gi|380834682|gb|EIC14511.1| ATP-dependent Clp protease proteolytic subunit [Kingella kingae
PYKK081]
Length = 205
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L + RIIF+ P+N A ++Q++ L + + D D
Sbjct: 6 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQMLFLESENPDKD 65
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 66 IYFYINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSR 125
Query: 198 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+M++QP G GG D++ E + + L HT
Sbjct: 126 VMIHQPLISGGLGGQASDIEIHARELLKLKEKLNQMLAEHT 166
>gi|121605848|ref|YP_983177.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
naphthalenivorans CJ2]
gi|120594817|gb|ABM38256.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
naphthalenivorans CJ2]
Length = 216
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 5/155 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + R+IF+ P+N A ++QL+ L + + D DI
Sbjct: 25 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISF 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +L+ G KG R+++PN+R+M+
Sbjct: 85 YINSPGGSVTAGMAIYDTMQFIKPDVSTLCVGMAASMGAFLLSSGTKGKRFSLPNSRVMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235
+QP G+ G D++ + + +R L+ +L H
Sbjct: 145 HQPSGGAQGQASDIEIHARDILKTRD-QLNRILAH 178
>gi|149376712|ref|ZP_01894470.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
algicola DG893]
gi|149358951|gb|EDM47417.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
algicola DG893]
Length = 227
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 86/141 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGGS+ + ++I
Sbjct: 48 FDIFSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMSI 107
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G AAS A +LAGG +G R +PN+R+M++QP G G D++
Sbjct: 108 YDTMQFIKPDVATLCVGQAASMGAFLLAGGAEGKRACLPNSRVMIHQPLGGYQGQATDIE 167
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E + RH S L HT
Sbjct: 168 IHTREILKIRHTLNSILAHHT 188
>gi|116243156|sp|Q21Y67.2|CLPP_RHOFD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 202
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + R+IF+ P+N VA ++QL+ L + + D DI
Sbjct: 11 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDYVANLVVAQLLFLESDNPDKDISF 70
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AI+D M+++KP V T+C G+AAS A +LA G KG R+++PN+++M+
Sbjct: 71 YINSPGGSVSAGMAIFDTMNFVKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKVMI 130
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP GS G +++ Q E + +R
Sbjct: 131 HQPSGGSQGQATEIEIQAREILKTRE 156
>gi|111115440|ref|YP_710058.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
PKo]
gi|216263526|ref|ZP_03435521.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
afzelii ACA-1]
gi|410679390|ref|YP_006931792.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
HLJ01]
gi|123145670|sp|Q0SMP6.1|CLPP_BORAP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|110890714|gb|ABH01882.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
PKo]
gi|215980370|gb|EEC21191.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Borrelia
afzelii ACA-1]
gi|408536778|gb|AFU74909.1| ATP-dependent Clp protease proteolytic component [Borrelia afzelii
HLJ01]
Length = 197
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D + DI +
Sbjct: 7 LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLLFLESEDSNKDIYL 66
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LA G KG R ++ +RIM+
Sbjct: 67 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLAAGAKGKRESLTYSRIMI 126
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 127 HQPWGGISGQASDINIQANE 146
>gi|359689539|ref|ZP_09259540.1| ATP-dependent Clp protease proteolytic subunit [Leptospira
licerasiae serovar Varillal str. MMD0835]
gi|418749517|ref|ZP_13305805.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Leptospira licerasiae str. MMD4847]
gi|418759173|ref|ZP_13315353.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384113664|gb|EID99928.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404274402|gb|EJZ41720.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Leptospira licerasiae str. MMD4847]
Length = 197
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L ++RIIF+G I+ A I+QL+ L + D DI +
Sbjct: 3 IIPTVIEQTGRGEMRYDVFSRLLKDRIIFLGDAISDDYANVIIAQLLFLDAENPDRDIYL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGG + S LAIYD M +IK V T+C G A+S AA++LAGG KG R A+P++RIM+
Sbjct: 63 YLNSPGGYVSSGLAIYDTMQYIKADVRTLCIGQASSMAALLLAGGAKGKRSALPHSRIMM 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D+ Q E + + V HT
Sbjct: 123 HQPTGGATGQASDIAIQAKEVLKLKQVLNGLYAKHT 158
>gi|333375817|ref|ZP_08467617.1| ATP-dependent Clp protease, protease subunit [Kingella kingae ATCC
23330]
gi|332969605|gb|EGK08623.1| ATP-dependent Clp protease, protease subunit [Kingella kingae ATCC
23330]
Length = 205
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L + RIIF+ P+N A ++Q++ L + + D D
Sbjct: 6 NNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQMLFLESENPDKD 65
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I Y+N PGGS+ + ++IYD M +IKP V T+C G AAS A +L+ G KG R+A+PN+R
Sbjct: 66 IYFYINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSR 125
Query: 198 IMLNQP--QSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+M++QP G GG D++ E + + L HT
Sbjct: 126 VMIHQPLISGGLGGQASDIEIHARELLKLKEKLNQMLAEHT 166
>gi|304440714|ref|ZP_07400598.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304370901|gb|EFM24523.1| ATP-dependent Clp protease proteolytic subunit [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 194
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 4/134 (2%)
Query: 85 LMPAV--MTPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V MT G D+ S L + RIIFI IN++ A ++QL+ L + D + DI +
Sbjct: 3 LVPTVIEMTNRGERAYDIYSRLLKERIIFISGEINNVTADLVVAQLLFLESEDPNKDIQI 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + AI+D M++IKP V T+C G+AAS A +LA G+KG R+A+PN+ IM+
Sbjct: 63 YINSPGGSVSAGFAIFDTMNYIKPDVSTICIGMAASMGAFLLAAGKKGKRFALPNSEIMI 122
Query: 201 NQPQSGSGGHVEDV 214
+QP G+ G D+
Sbjct: 123 HQPLGGAQGQASDI 136
>gi|403745050|ref|ZP_10954078.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus hesperidum URH17-3-68]
gi|403121705|gb|EJY55982.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Alicyclobacillus hesperidum URH17-3-68]
Length = 193
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ +G I+ VA ++QL+ LA D + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIVLLGTAIDDNVANAIVAQLLFLAADDPEKDIQLYINSPGGSVTAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D + I+P V T+C G+AAS A +LA GEKG RYA+PNA IM++QP G G D++
Sbjct: 79 DTIQHIRPAVSTMCVGMAASMGAFLLAAGEKGKRYALPNAEIMIHQPLGGVQGQASDIQ 137
>gi|357009842|ref|ZP_09074841.1| ATP-dependent Clp protease proteolytic subunit 1 [Paenibacillus
elgii B69]
Length = 192
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 82/129 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G I+ VA +QL+ L+ D + DI +Y+N PGGS + AIY
Sbjct: 19 DIYSRLLKDRIVFLGSEIDDQVANSITAQLLLLSAEDPEKDIHLYINSPGGSTTAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS AA++L G KG R+A+PNA +M++QP G G D+K
Sbjct: 79 DTMQFIKPDVSTICVGFAASFAAVLLVAGAKGKRFALPNAEVMIHQPWGGMKGQASDMKI 138
Query: 217 QVNEAVISR 225
+ + +R
Sbjct: 139 HADRFLDTR 147
>gi|146299462|ref|YP_001194053.1| endopeptidase Clp [Flavobacterium johnsoniae UW101]
gi|146153880|gb|ABQ04734.1| Endopeptidase Clp [Flavobacterium johnsoniae UW101]
Length = 224
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 103/190 (54%), Gaps = 18/190 (9%)
Query: 64 KDFCSTEHSY------KIISG---KNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPI 114
K+F + H KIIS N P ++ LD+ S L +RIIF+G I
Sbjct: 8 KNFATKHHGVNAMYYDKIISAMTPTNLTPNIIEERQLNVSILDVFSRLMMDRIIFLGTGI 67
Query: 115 NSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174
+ +A +QL+ L + D DI +YLN PGGS+Y+ L IYD M +IKP V T+C G+A
Sbjct: 68 DDQIANVVQAQLLFLESADASKDIQIYLNSPGGSVYAGLGIYDTMQYIKPDVATICTGMA 127
Query: 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEA---------VISR 225
AS A++L G G R A+P++R+M++QP G+ G D++ + E +IS+
Sbjct: 128 ASMGAVLLCAGAAGKRSALPHSRVMIHQPSGGAQGVATDMEINLREMLKLKDELYHIISQ 187
Query: 226 HVSLSFLLLH 235
H SF +H
Sbjct: 188 HSGQSFERVH 197
>gi|452820068|gb|EME27116.1| ATP-dependent Clp protease, protease subunit [Galdieria
sulphuraria]
Length = 293
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 94/154 (61%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +P V +D+ S L ++RI+ +G+ ++ VA ++Q++ LA D DI +Y+
Sbjct: 93 PAPIPTVYMGDTQMDIYSRLAKDRILLLGRAVDDEVANALVAQMLFLANEDPSKDITLYI 152
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+ + LA+YD M +I V TVCFG AAS AA +L G KG R ++PNARIM++Q
Sbjct: 153 NSPGGSVSAGLAVYDTMQFIPCDVSTVCFGTAASMAAFLLGAGTKGKRKSLPNARIMIHQ 212
Query: 203 PQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
P G+ G D++ Q E + + + +++ +T
Sbjct: 213 PLGGAQGQAADIEIQAREILFIKSLLNTYMADYT 246
>gi|260435297|ref|ZP_05789267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 8109]
gi|260413171|gb|EEX06467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechococcus
sp. WH 8109]
Length = 205
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 9 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 68
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 69 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 128
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 129 HQPLGGAQGQASDIRIQADE 148
>gi|403049603|ref|ZP_10904087.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86D]
Length = 204
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 87/141 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + R+IF+ P++ ++ ++QL+ L + + + DI +Y+N PGGSI + LAI
Sbjct: 23 FDIYSRLLKERVIFLSGPVDDYMSNVVVAQLLFLESENPEKDISIYINSPGGSISAGLAI 82
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++ P + T+C G AAS AI+LAGG KG R+A+PN+RIM++QP G G D +
Sbjct: 83 YDTMQFVSPTISTLCIGQAASMGAILLAGGNKGKRFALPNSRIMIHQPLGGFQGQASDFE 142
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E + + + L HT
Sbjct: 143 IHAKEILHMKKIVNEILAKHT 163
>gi|387928693|ref|ZP_10131371.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
methanolicus PB1]
gi|387588279|gb|EIJ80601.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
methanolicus PB1]
Length = 201
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ VA ++QL+ L + + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTPIDDYVANSIVAQLLFLEAENPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPDVQTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|307718289|ref|YP_003873821.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
thermophila DSM 6192]
gi|306532014|gb|ADN01548.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
thermophila DSM 6192]
Length = 206
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+FI IN + A ++QL+ L + D + DI +
Sbjct: 8 LVPIVIEQTGMGERSYDIYSRLLKDRIVFIDGEINDLTADLVVAQLLFLESQDPEKDISV 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++KP V T+C G AAS A++L G G R A+P++RI++
Sbjct: 68 YINTPGGSVTAGLAIYDTMQYVKPDVQTICLGQAASMGALLLTAGTPGKRLALPSSRILI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ Q E V + + + + HT
Sbjct: 128 HQPWGGVQGQATDISIQAREMVRIKKLLIHYFARHT 163
>gi|302335570|ref|YP_003800777.1| ATP-dependent Clp protease proteolytic subunit ClpP [Olsenella uli
DSM 7084]
gi|301319410|gb|ADK67897.1| ATP-dependent Clp protease proteolytic subunit ClpP [Olsenella uli
DSM 7084]
Length = 204
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ TP G D+ S L +RI+F+G+ I A I+QL+ L + D D DI
Sbjct: 8 PLIPYVIEQTPRGERSYDIYSRLLNDRIVFLGEEITRDSANLVIAQLLHLESQDPDKDIS 67
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y++ PGG +Y+ L I D M++IKP V T+C G+AAS A+++LA G G R A+PN+ IM
Sbjct: 68 LYIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMAASMASVLLAAGTPGKRLALPNSMIM 127
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP SG+ G D++ +E R+ L +T
Sbjct: 128 IHQPSSGAQGQQTDIQIVADETKWIRNHMNELLAQYT 164
>gi|444911057|ref|ZP_21231233.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
gi|444718395|gb|ELW59208.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
Length = 201
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
DL S L ++RI+ +G P+N VA ++QL+ L + D D I +Y+N PGGS+ + LAIY
Sbjct: 18 DLYSRLLKDRIVMLGTPVNDDVANIIVAQLLFLESEDPDKGISLYINSPGGSVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++K V T+C G AAS A++L G G RYA+PN+RIM++QP G+ G D+
Sbjct: 78 DTMQYVKCPVSTICIGQAASMGALLLLAGSPGKRYALPNSRIMIHQPLGGAQGQASDIDI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + HT
Sbjct: 138 QAKEILRLRSYINGLFVKHT 157
>gi|317486004|ref|ZP_07944859.1| Clp protease [Bilophila wadsworthia 3_1_6]
gi|345887722|ref|ZP_08838886.1| ATP-dependent Clp protease proteolytic subunit [Bilophila sp.
4_1_30]
gi|316922777|gb|EFV44008.1| Clp protease [Bilophila wadsworthia 3_1_6]
gi|345041509|gb|EGW45656.1| ATP-dependent Clp protease proteolytic subunit [Bilophila sp.
4_1_30]
Length = 207
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 86/140 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+ +G +N VA +QL+ L + D + +I +Y+N PGGS+ + +AIY
Sbjct: 24 DIFSRLLKDRIVLLGSEVNDAVASLICAQLLFLESQDPEKEIYLYINSPGGSVTAGMAIY 83
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++I P + TVC G AAS A +L+ G+KGMRYA+PN+++M++QP G G D+
Sbjct: 84 DTMNYITPPIATVCMGRAASMGAFLLSAGQKGMRYALPNSQVMIHQPLGGFQGQATDIDI 143
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 144 HAREILRMRETLNGLLAKHT 163
>gi|358450532|ref|ZP_09160990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
manganoxydans MnI7-9]
gi|385331926|ref|YP_005885877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
adhaerens HP15]
gi|311695076|gb|ADP97949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
adhaerens HP15]
gi|357225181|gb|EHJ03688.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
manganoxydans MnI7-9]
Length = 201
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 86/144 (59%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGGS+ + ++I
Sbjct: 22 FDIYSRLLKERVIFMVGPVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMSI 81
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G AAS A +LAGG G R +PN+R+M++QP G G D++
Sbjct: 82 YDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPNSRVMIHQPLGGYQGQATDIE 141
Query: 216 RQVNEAVISRHVSLSFLLLHTLND 239
E + RH S L HT D
Sbjct: 142 IHTREILKIRHTLNSILAHHTGQD 165
>gi|254453571|ref|ZP_05067008.1| Clp protease [Octadecabacter arcticus 238]
gi|198267977|gb|EDY92247.1| Clp protease [Octadecabacter arcticus 238]
Length = 195
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 81/118 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ PI+S ++ ++QL+ L + +I MY+N PGG + + L+IY
Sbjct: 14 DIFSRLLKERIIFVNGPIHSGMSHLIVAQLLHLEAENPKKEISMYINSPGGEVTAGLSIY 73
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKPKV T+ G+AAS ++I GGEKGMR+A+PNA +M++QP GS G ED+
Sbjct: 74 DTMQYIKPKVSTLICGMAASMGSVIAIGGEKGMRFALPNAEVMIHQPSGGSQGKAEDI 131
>gi|108804374|ref|YP_644311.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rubrobacter
xylanophilus DSM 9941]
gi|116243164|sp|Q1AVS9.1|CLPP_RUBXD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|108765617|gb|ABG04499.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rubrobacter
xylanophilus DSM 9941]
Length = 200
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 91/147 (61%), Gaps = 12/147 (8%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L ++RIIF+G P++ VA ++QL+ L + D + DI +Y+N PGGS+ + LAI
Sbjct: 24 MDIYSRLLKDRIIFLGTPVDDQVANAIMAQLLHLESEDPEQDINLYINSPGGSVSAGLAI 83
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS-GGHVEDV 214
YD M ++KP + T G+AAS A +LA G KG R+A+PN RI+L+QP G G DV
Sbjct: 84 YDTMQFVKPDIVTTALGMAASMGAFLLAAGTKGKRFALPNTRILLHQPAVGGLAGQASDV 143
Query: 215 ----------KRQVNEAVISRHVSLSF 231
KR++NE ++S H +
Sbjct: 144 EIHARELIRTKRRLNE-ILSEHTGQPY 169
>gi|428773238|ref|YP_007165026.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
stanieri PCC 7202]
gi|428687517|gb|AFZ47377.1| ATP-dependent Clp protease proteolytic subunit ClpP [Cyanobacterium
stanieri PCC 7202]
Length = 195
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + +A ++QL+ L D + DI +
Sbjct: 1 MVPTVIETSGRGERAFDIYSRLLRERIVFLGQQVTDELANSLVAQLLLLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIQPDVCTICVGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + ++ HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKKQLNHYMASHT 156
>gi|313887837|ref|ZP_07821517.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846180|gb|EFR33561.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptoniphilus harei ACS-146-V-Sch2b]
Length = 194
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 84/130 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+ +N +A ++QL+ L D + DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIFLSGEVNDTMADLIVAQLLFLEAEDPNKDIQLYINSPGGSVSAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMNYIKPDVSTICIGMAASMGAFLLASGAKGKRFALPNSDIMIHQPSGGAQGQASDIQI 138
Query: 217 QVNEAVISRH 226
+ + RH
Sbjct: 139 NAEKILKIRH 148
>gi|254469734|ref|ZP_05083139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
sp. JE062]
gi|374331792|ref|YP_005081976.1| ATP-dependent Clp protease proteolytic subunit [Pseudovibrio sp.
FO-BEG1]
gi|211961569|gb|EEA96764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
sp. JE062]
gi|359344580|gb|AEV37954.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Pseudovibrio sp. FO-BEG1]
Length = 211
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 87/138 (63%), Gaps = 10/138 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ P+ +A SQL+ L + + +I +Y+N PGG + S LAIY
Sbjct: 28 DIFSRLLKERIIFLTGPVEDTMATLVCSQLLYLEAENPNKEIALYINSPGGVVTSGLAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV-- 214
D M +I+PK+ T+C G AAS +++LA GEKGMR+++PN+R+M++QP G G D+
Sbjct: 88 DTMQFIRPKISTLCIGQAASMGSLLLAAGEKGMRFSLPNSRVMVHQPSGGFRGQAADIML 147
Query: 215 --------KRQVNEAVIS 224
KR++NE +S
Sbjct: 148 HAQEILKLKRRLNEIYVS 165
>gi|335424989|ref|ZP_08553980.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salinisphaera
shabanensis E1L3A]
gi|334886665|gb|EGM25012.1| ATP-dependent Clp protease proteolytic subunit ClpP [Salinisphaera
shabanensis E1L3A]
Length = 210
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 86/141 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + R+IF P++ +A ++QL+ L + + D DI +Y+N PGG I + ++I
Sbjct: 23 FDIYSRLLKERVIFCVGPVDDQMANLIVAQLLFLESDNPDKDIQLYINSPGGVITAGMSI 82
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G AAS A++LAGG G RYA+PN+R+M++QP G G D++
Sbjct: 83 YDTMQFIKPDVATMCLGQAASMGAVLLAGGAHGKRYALPNSRVMIHQPLGGFQGQATDIE 142
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
E + +R L HT
Sbjct: 143 IHAREILHARERLNEVLAHHT 163
>gi|451822957|ref|YP_007459231.1| ATP-dependent Clp, protease subunit [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775757|gb|AGF46798.1| ATP-dependent Clp, protease subunit [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 215
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ PI+ +A ++Q++ L + D + DI +Y+N PGGSIY+ +AI+
Sbjct: 41 DIYSRLLKERIIFLVGPIDDNIANLVVAQMLFLESEDPNKDINIYINSPGGSIYAGMAIF 100
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +L+ G+KG R+++PN+ IM++QP G+ G D++
Sbjct: 101 DTMMFVKPDVSTICIGLAASMGAFLLSAGKKGKRFSLPNSSIMIHQPSGGANGQATDIQI 160
Query: 217 QVNEAVISRHVSLSFLL 233
E ++ L+F++
Sbjct: 161 HAKE-ILRLKNRLNFIM 176
>gi|384172971|ref|YP_005554348.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter sp. L]
gi|345472581|dbj|BAK74031.1| ATP-dependent Clp protease proteolytic subunit [Arcobacter sp. L]
Length = 194
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 81/124 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + IN VA ++QL+ L D D DI +Y+N PGG I S ++IY
Sbjct: 19 DIYSRLLKDRIIMLSGEINDAVASTVVAQLLFLEAEDPDKDIYLYINSPGGVITSGMSIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V T+C G AAS A +L+ G +G RY++PN+RIM++QP G+ G D++
Sbjct: 79 DTMNYIKPDVCTICIGQAASMGAFLLSSGTRGKRYSLPNSRIMIHQPLGGAQGQATDIQI 138
Query: 217 QVNE 220
Q E
Sbjct: 139 QAKE 142
>gi|160893842|ref|ZP_02074625.1| hypothetical protein CLOL250_01396 [Clostridium sp. L2-50]
gi|156864494|gb|EDO57925.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Clostridium sp. L2-50]
Length = 193
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N A I+QL+ L + D DI +Y+N PGGS+ + L IY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDTSASIVIAQLLFLESEDPSKDISLYINSPGGSVTAGLGIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G+AAS A +LAGG KG R+A+PNA IM++QP GS G +++
Sbjct: 79 DTMQYIKCDVSTICCGMAASMGAFLLAGGAKGKRFALPNAEIMIHQPSGGSQGQATEIE 137
>gi|421074039|ref|ZP_15535081.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans JBW45]
gi|392527836|gb|EIW50920.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans JBW45]
Length = 201
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI+ VA I+QL+ L + D + DI MY+N PGG + + LAIY
Sbjct: 19 DIFSRLLKDRIIFIGGPIDDNVANVVIAQLLFLESEDPEKDIHMYINSPGGVVTAALAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS AA +L+ G KG RYA+P ARIM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICMGSAASAAAFLLSAGAKGKRYALPFARIMIHQPLGGTQGQATDIEI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R + L HT
Sbjct: 139 HAREILRLRELLNGILATHT 158
>gi|298490862|ref|YP_003721039.1| ATP-dependent Clp protease proteolytic subunit ClpP ['Nostoc
azollae' 0708]
gi|298232780|gb|ADI63916.1| ATP-dependent Clp protease, proteolytic subunit ClpP ['Nostoc
azollae' 0708]
Length = 201
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ ++S +A ++QL+ L D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDSGLANLIVAQLLFLDAEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKNIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRKLNGYLAQHT 156
>gi|186686250|ref|YP_001869446.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc
punctiforme PCC 73102]
gi|186468702|gb|ACC84503.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nostoc
punctiforme PCC 73102]
Length = 203
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L D + DI M
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDNNIANLIVAQLLYLDAEDPEKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDYLADHT 156
>gi|443315652|ref|ZP_21045132.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 6406]
gi|442784746|gb|ELR94606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptolyngbya
sp. PCC 6406]
Length = 201
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ + S A ++Q++ L D + DI +
Sbjct: 1 MIPTVIEQSGRGERAFDIYSRLLRERIIFLGQEVTSDSANLIVAQMLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS + +LA G+KG R ++PNARIM+
Sbjct: 61 YVNSPGGSVTAGLGIFDTMNHIRPDVCTICVGLAASMGSFLLAAGKKGKRMSLPNARIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q E
Sbjct: 121 HQPLGGAQGQATDIEIQAKE 140
>gi|398345034|ref|ZP_10529737.1| ATP-dependent Clp protease proteolytic subunit [Leptospira inadai
serovar Lyme str. 10]
Length = 198
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L ++RIIF+G I+ A I+QL+ L + D DI +
Sbjct: 3 VIPVVIEQTGRGERSYDIYSRLLKDRIIFLGNAISDEYANVVIAQLLFLDAENPDRDIYL 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S LAIYD M +IK V T+C G A+S AA++LAGG KG R A+P++RIM+
Sbjct: 63 YINSPGGYVSSGLAIYDTMQYIKADVRTLCVGQASSMAALLLAGGAKGKRSALPHSRIMM 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D+ Q E + + + HT
Sbjct: 123 HQPTGGATGQASDIAIQAKEVLKLKEILNGLYTKHT 158
>gi|410726144|ref|ZP_11364388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
sp. Maddingley MBC34-26]
gi|410601390|gb|EKQ55905.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
sp. Maddingley MBC34-26]
Length = 198
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ ++ +A ++QL+ L D D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSKLLKDRIIFLGEEVSDSIANLIVAQLIFLEAEDPDKDIHLYINSPGGSVTAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IK V T+C G+AAS A +LAGG G R+A+ NA +M++QP G+ G D+K
Sbjct: 79 DTMNYIKCDVSTICVGMAASMGAFLLAGGANGKRFALSNAEVMIHQPSGGAKGQASDIK 137
>gi|310641963|ref|YP_003946721.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
polymyxa SC2]
gi|386040947|ref|YP_005959901.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa M1]
gi|309246913|gb|ADO56480.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa SC2]
gi|343096985|emb|CCC85194.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa M1]
Length = 194
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 78/118 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G I+ +A I+QL+ LA D + DI MY+N PGGS + AIY
Sbjct: 20 DIYSRLLKDRIVFVGATIDDQLANSIIAQLLFLAAEDPEKDIYMYINSPGGSTSAGFAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV 214
D M +IKP+V T+C G AAS AI+L G KG R A+PN+ IM++QP G+ G D+
Sbjct: 80 DTMQYIKPEVHTICTGFAASFGAILLLAGAKGKRSALPNSEIMIHQPHGGAQGQASDI 137
>gi|392408625|ref|YP_006445232.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfomonile
tiedjei DSM 6799]
gi|390621761|gb|AFM22968.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfomonile
tiedjei DSM 6799]
Length = 197
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 85/140 (60%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RI+F+G ++ VA I+QL+ L + + D DI Y+N PGG + S LAIY
Sbjct: 18 DIYSRLLKERIVFLGTGVDDYVANLIIAQLLFLESEEPDKDINFYINSPGGIVTSGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP + T+C G AAS A++LA G G RYA+P+ARI+++QP G G D++
Sbjct: 78 DTMQYIKPDIQTICIGQAASMGALLLAAGTHGKRYALPHARILIHQPMGGFQGQATDIEI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L+ HT
Sbjct: 138 HAREILRMRSELNDILVKHT 157
>gi|113867496|ref|YP_725985.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
H16]
gi|194289504|ref|YP_002005411.1| ATP-dependent clp protease proteolytic subunit [Cupriavidus
taiwanensis LMG 19424]
gi|339325652|ref|YP_004685345.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
N-1]
gi|123033071|sp|Q0KBK4.1|CLPP_RALEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706449|sp|B3R4W1.1|CLPP_CUPTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|113526272|emb|CAJ92617.1| Endopeptidase Clp (type 1) [Ralstonia eutropha H16]
gi|193223339|emb|CAQ69344.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Cupriavidus taiwanensis LMG 19424]
gi|338165809|gb|AEI76864.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
N-1]
Length = 216
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D D+ +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDVSL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRE 170
>gi|451936350|ref|YP_007460204.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777273|gb|AGF48248.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 210
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 89/145 (61%), Gaps = 4/145 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L + RI+F+ P+ A I+QL+ L + D DI +Y
Sbjct: 19 VPTVIEQSGRSERAYDIYSRLLKERIVFLSGPVTDYSANLVIAQLLFLESDDPSKDIFLY 78
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+Y+ +AI+D M++IKP + T+C G+AAS A +LA G KG R+++PNA +M++
Sbjct: 79 VNSPGGSVYAGMAIFDTMNFIKPDISTMCVGIAASMGAFLLASGTKGKRFSLPNACMMIH 138
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRH 226
QP G+ G D++ E + R+
Sbjct: 139 QPSGGAQGQASDIQIHAEEILRLRN 163
>gi|213962584|ref|ZP_03390846.1| Clp protease [Capnocytophaga sputigena Capno]
gi|213954910|gb|EEB66230.1| Clp protease [Capnocytophaga sputigena Capno]
Length = 219
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 87/138 (63%)
Query: 83 PPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYL 142
P +M +D+ S L +RIIF+G +N VA +QL+ L ++D DI +Y+
Sbjct: 31 PYIMEERQLNVAQMDVFSRLMMDRIIFLGTDVNDQVANIVTAQLLFLESVDSAKDIQIYI 90
Query: 143 NCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202
N PGGS+Y+ L +YD M +IKP V T+C G+AAS AA++L G +G R A+P++R+M++Q
Sbjct: 91 NSPGGSVYAGLGMYDTMQFIKPDVATICTGIAASMAAVLLCAGAEGKRSALPHSRVMIHQ 150
Query: 203 PQSGSGGHVEDVKRQVNE 220
P G+ G D++ + E
Sbjct: 151 PSGGAQGVASDMEINLKE 168
>gi|415886844|ref|ZP_11548587.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
methanolicus MGA3]
gi|387585495|gb|EIJ77820.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
methanolicus MGA3]
Length = 201
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G PI+ VA ++QL+ L + + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGTPIDDYVANSIVAQLLFLEAENPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG RYA+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPDVQTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQATEIE 137
>gi|154482729|ref|ZP_02025177.1| hypothetical protein EUBVEN_00406 [Eubacterium ventriosum ATCC
27560]
gi|149736324|gb|EDM52210.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacterium ventriosum ATCC 27560]
Length = 193
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ IN VA ++QL+ L + D DI MY+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEINDAVASTVVAQLLFLESEDPGKDIHMYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M+++K V T C G+AAS A +L+ G KG RYA+PNA +M++QP G+ G +++
Sbjct: 79 DTMNYVKCDVSTTCIGMAASMGAFLLSSGAKGKRYALPNAEVMIHQPLGGAQGQATEIQ 137
>gi|308067009|ref|YP_003868614.1| ATP-dependent Clp protease proteolytic subunit(endopeptidase Clp)
[Paenibacillus polymyxa E681]
gi|305856288|gb|ADM68076.1| ATP-dependent Clp protease proteolytic subunit(Endopeptidase Clp)
[Paenibacillus polymyxa E681]
Length = 193
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 14 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYINSPGGSITAGMAIF 73
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 74 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIE 132
>gi|284097335|ref|ZP_06385465.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
gi|283831154|gb|EFC35134.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
Length = 203
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 86/140 (61%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ + + I+QL+ L D + DI +Y+N PGGS+ + + IY
Sbjct: 18 DIYSRLLKDRIIFLGAPIDDIFSNLIIAQLLFLEAEDPEKDINLYINSPGGSVTAGMGIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP + T+C G AAS A++LA G +G R+A+PNAR+M++QP G G ++
Sbjct: 78 DTMQYVKPPITTICLGQAASMGALLLAAGTQGKRHALPNARVMIHQPMGGFQGQATEIDI 137
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + R L HT
Sbjct: 138 HAREILKIRERLNQILSEHT 157
>gi|152991609|ref|YP_001357330.1| ATP-dependent Clp protease proteolytic subunit [Sulfurovum sp.
NBC37-1]
gi|166214717|sp|A6Q675.1|CLPP_SULNB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|151423470|dbj|BAF70973.1| ATP-dependent Clp protease, proteolytic subunit [Sulfurovum sp.
NBC37-1]
Length = 195
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 80/124 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + +N VA ++QL+ L D D DI Y+N PGG I S L+++
Sbjct: 19 DIYSRLLKDRIIMLSGEVNDQVASSIVAQLLFLEAQDPDKDIYFYINSPGGVITSGLSMF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP + T+C G AAS A +LA G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 79 DTMNYIKPDIVTICIGQAASMGAFLLASGTKGKRYALPHARIMIHQPSGGAQGQSTDIQI 138
Query: 217 QVNE 220
Q E
Sbjct: 139 QAQE 142
>gi|390456222|ref|ZP_10241750.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
peoriae KCTC 3763]
Length = 198
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIE 137
>gi|94310823|ref|YP_584033.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
metallidurans CH34]
gi|430810194|ref|ZP_19437309.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus sp.
HMR-1]
gi|116243154|sp|Q1LM62.1|CLPP_RALME RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|93354675|gb|ABF08764.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Cupriavidus metallidurans CH34]
gi|429497428|gb|EKZ95961.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus sp.
HMR-1]
Length = 216
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D D+ +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDVSL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G+AAS A +LA G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFIKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRE 170
>gi|258514515|ref|YP_003190737.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum acetoxidans DSM 771]
gi|257778220|gb|ACV62114.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum acetoxidans DSM 771]
Length = 194
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 82/140 (58%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG PI A I+QL+ L D + DI +Y+N PGG + + +AIY
Sbjct: 20 DIYSRLLKDRIIFIGGPIEDYTANLIIAQLLFLEAEDPEKDIHLYINSPGGVVTAGMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS + +LA G G R+A+P ARIM++QP G G D+
Sbjct: 80 DTMQYIKPPVSTICLGQAASMGSFLLAAGAPGKRFALPYARIMIHQPSGGMQGQATDIGI 139
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + + + L HT
Sbjct: 140 HAKEILRMKEILNKLLSKHT 159
>gi|113474441|ref|YP_720502.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
erythraeum IMS101]
gi|110165489|gb|ABG50029.1| ATP-dependent Clp protease proteolytic subunit ClpP [Trichodesmium
erythraeum IMS101]
Length = 231
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 87/141 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
DL S L R RIIF+G ++ +A +Q++ L D + DI +Y+N PGGS+ + +AI
Sbjct: 43 FDLYSRLLRERIIFLGTQVDENLANTITAQMLFLDAEDPEKDIQLYINSPGGSVTAGMAI 102
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M ++P V T+C+G+AAS A +L+GG KG R ++P++RIM++QP G+ G D++
Sbjct: 103 YDTMQQVRPDVVTICYGLAASMGAFLLSGGAKGKRMSLPSSRIMIHQPLGGAQGQAVDIE 162
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 163 IQAKEILYHKRKLNELLAEHT 183
>gi|407010349|gb|EKE25269.1| hypothetical protein ACD_5C00228G0012 [uncultured bacterium]
Length = 194
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 10/150 (6%)
Query: 82 NPPLMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P+V+ D+ S L ++RIIF+G PI+ VA I+QL+ L + D
Sbjct: 3 NNYLIPSVIEKTNEGERAYDIYSRLLKDRIIFLGTPIDDGVANAIIAQLLFLEQQNPKED 62
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGG + S LAIYD M +++P V T+C G+AAS AA+IL G+KG R+ +PNA
Sbjct: 63 ITIYINSPGGVVSSALAIYDTMQYVRPDVRTICVGLAASGAALILGAGKKGKRFVLPNAE 122
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRHV 227
+M++Q G+ G DV + +RH+
Sbjct: 123 VMIHQVMGGASGQASDVD------IHARHI 146
>gi|375306341|ref|ZP_09771639.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus sp.
Aloe-11]
gi|375081594|gb|EHS59804.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus sp.
Aloe-11]
Length = 198
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIE 137
>gi|256420340|ref|YP_003120993.1| endopeptidase Clp [Chitinophaga pinensis DSM 2588]
gi|256035248|gb|ACU58792.1| Endopeptidase Clp [Chitinophaga pinensis DSM 2588]
Length = 234
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 87/141 (61%), Gaps = 11/141 (7%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G P+N VA +QL+ L + D DI MY+N PGGS+Y+ L I
Sbjct: 48 MDVFSRLMMDRIIFMGDPVNDYVANIITAQLLFLESTDRTRDIQMYINSPGGSVYAGLGI 107
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDV- 214
YD M I P V T+C G+AAS A++L G KG R A+ +AR+M++QP G+ G D+
Sbjct: 108 YDTMQIIAPDVATICTGMAASFGAVLLVAGTKGKRTALKHARVMIHQPHGGAEGQTSDIE 167
Query: 215 ---------KRQVNEAVISRH 226
K+++NE +I+ H
Sbjct: 168 ITAREFVKLKKELNE-IIATH 187
>gi|189219051|ref|YP_001939692.1| ATP-dependent Clp protease proteolytic subunit [Methylacidiphilum
infernorum V4]
gi|189185909|gb|ACD83094.1| ATP-dependent Clp protease proteolytic subunit [Methylacidiphilum
infernorum V4]
Length = 219
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+FIG PI+ +A I+QL+ L D DI +Y++ PGG + + +AIY
Sbjct: 28 DIFSRLLKDRIVFIGTPIDDNMANLVIAQLLFLQMEDPKKDINLYIHSPGGYVTAGMAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++ V T C G AAS AA++LA G KG R+A+PNARIM++QP G+ G D+
Sbjct: 88 DTMQFLSCDVNTYCIGQAASMAAVLLAAGTKGKRFALPNARIMIHQPLGGAQGQASDISI 147
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + ++ + L HT
Sbjct: 148 QAQEILRTKRLLNEILSYHT 167
>gi|119503321|ref|ZP_01625405.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
proteobacterium HTCC2080]
gi|119460967|gb|EAW42058.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
proteobacterium HTCC2080]
Length = 212
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 11/168 (6%)
Query: 80 NDNPP-------LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVT 128
+D PP L+P V+ T G D+ S L + R+IF P+ +A ++QL+
Sbjct: 3 HDRPPQDMSNLGLIPMVIEQTSRGERSFDIYSRLLKERVIFAVGPVEDNMANLIVAQLLF 62
Query: 129 LATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKG 188
L + + D DI +Y+N PGGS+ + L+IYD M ++KP V T+C G AAS A +L+GG G
Sbjct: 63 LESENPDKDIHLYINSPGGSVTAGLSIYDTMQFVKPDVSTMCLGQAASMGAFLLSGGASG 122
Query: 189 MRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
RY +PNAR M++QP G+ G D+ Q E +I R + HT
Sbjct: 123 KRYILPNARTMIHQPSGGAQGQATDIDIQAKEILIIRERLNRLMAEHT 170
>gi|16332037|ref|NP_442765.1| ATP-dependent protease ClpP [Synechocystis sp. PCC 6803]
gi|383323780|ref|YP_005384634.1| ATP-dependent protease [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326949|ref|YP_005387803.1| ATP-dependent protease [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492833|ref|YP_005410510.1| ATP-dependent protease [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384438101|ref|YP_005652826.1| ATP-dependent protease [Synechocystis sp. PCC 6803]
gi|451816189|ref|YP_007452641.1| ATP-dependent protease ClpP [Synechocystis sp. PCC 6803]
gi|1705930|sp|P54416.1|CLPP1_SYNY3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|1001349|dbj|BAA10836.1| ATP-dependent protease; ClpP [Synechocystis sp. PCC 6803]
gi|339275134|dbj|BAK51621.1| ATP-dependent protease [Synechocystis sp. PCC 6803]
gi|359273100|dbj|BAL30619.1| ATP-dependent protease [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276270|dbj|BAL33788.1| ATP-dependent protease [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359279440|dbj|BAL36957.1| ATP-dependent protease [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407960326|dbj|BAM53566.1| ATP-dependent protease ClpP [Bacillus subtilis BEST7613]
gi|451782158|gb|AGF53127.1| ATP-dependent protease ClpP [Synechocystis sp. PCC 6803]
Length = 198
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 94/153 (61%), Gaps = 9/153 (5%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + A ++QL+ L D + DI +
Sbjct: 1 MIPTVIETSGRGDRAFDIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE-----AVISRHVS 228
+QP G+ G D++ Q E A++++H++
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKALLNQHLA 153
>gi|163746712|ref|ZP_02154069.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45]
gi|161379826|gb|EDQ04238.1| Endopeptidase Clp [Oceanibulbus indolifex HEL-45]
Length = 218
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 90/141 (63%), Gaps = 6/141 (4%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ PI+S ++ ++QL+ L + +I MY+N PGG + + L+IY
Sbjct: 28 DIFSRLLKERIIFVNGPIHSGMSHLVVAQLLHLEAENPTKEISMYINSPGGEVTAGLSIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+ G+AAS ++I GGEKGMR+A+PNA +M++QP GS G ED+
Sbjct: 88 DTMQYIKPKVSTLICGMAASMGSVIAIGGEKGMRFALPNAEVMIHQPSGGSQGMAEDI-- 145
Query: 217 QVNEAVISRHVSLSFLLLHTL 237
+ +RH+ + ++ L
Sbjct: 146 ----LISARHIERTRERMYQL 162
>gi|386346350|ref|YP_006044599.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
thermophila DSM 6578]
gi|339411317|gb|AEJ60882.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta
thermophila DSM 6578]
Length = 206
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+FI IN + A ++QL+ L + D + DI +
Sbjct: 8 LVPIVIEQTGMGERSYDIYSRLLKDRIVFIDGEINDLTADLVVAQLLFLESQDPEKDISV 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++KP V T+C G AAS A++L G G R A+P++RI++
Sbjct: 68 YINTPGGSVTAGLAIYDTMQYVKPDVQTICLGQAASMGALLLTAGTPGKRLALPSSRILI 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ Q E V + + + + HT
Sbjct: 128 HQPWGGVQGQATDISIQAREMVRIKKLLIHYFAHHT 163
>gi|310639654|ref|YP_003944412.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
polymyxa SC2]
gi|386038858|ref|YP_005957812.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa M1]
gi|309244604|gb|ADO54171.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa SC2]
gi|343094896|emb|CCC83105.1| ATP-dependent Clp protease proteolytic subunit [Paenibacillus
polymyxa M1]
Length = 198
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYINSPGGSITAGMAIF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIE 137
>gi|288554081|ref|YP_003426016.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
pseudofirmus OF4]
gi|288545241|gb|ADC49124.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
pseudofirmus OF4]
Length = 195
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ L D + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLQAEDPEKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKPKV T+C G+AAS A +LA GE G R A+PN+ +M++QP G+ G D++
Sbjct: 79 DTMNFIKPKVSTICIGMAASMGAFLLAAGEPGKRLALPNSEVMIHQPLGGTRGQASDIE 137
>gi|33865835|ref|NP_897394.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus sp.
WH 8102]
gi|67460510|sp|Q7U6N7.1|CLPP2_SYNPX RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|33633005|emb|CAE07816.1| ATP-dependent Clp protease proteolytic subunit 1 [Synechococcus sp.
WH 8102]
Length = 197
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M IKP V TVC G+AAS A +L G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|218133242|ref|ZP_03462046.1| hypothetical protein BACPEC_01107 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992115|gb|EEC58119.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[[Bacteroides] pectinophilus ATCC 43243]
Length = 193
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 85/130 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ + + A ++QL+ L + D DI Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSASLIVAQLLFLESEDPGKDINFYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M+++K V T+C G+AAS A +L+GG KG R A+PNA IM++QP G+ G D+K
Sbjct: 79 DTMNYVKCDVSTICIGMAASMGAFLLSGGTKGKRLALPNAEIMIHQPSGGAQGQATDIKI 138
Query: 217 QVNEAVISRH 226
+ + +RH
Sbjct: 139 VSDHIIKTRH 148
>gi|119485223|ref|ZP_01619608.1| Peptidase S14, ClpP [Lyngbya sp. PCC 8106]
gi|119457451|gb|EAW38576.1| Peptidase S14, ClpP [Lyngbya sp. PCC 8106]
Length = 238
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 101/177 (57%), Gaps = 6/177 (3%)
Query: 64 KDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVA 119
+DF S S K I N ++P V+ G DL S L R+RIIF+G I+ +A
Sbjct: 17 RDFQSV--SQKEIHSTNPANVMIPMVVEQSGMGERAFDLYSRLLRDRIIFLGTAIDDEIA 74
Query: 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAA 179
+Q++ L D + DI +Y+N PGGS+ + + IYD + ++P V T+C+G+AAS A
Sbjct: 75 NAVSAQMLFLDAEDPEKDIQLYINSPGGSVTAGMGIYDTIQQVRPDVVTICYGLAASMGA 134
Query: 180 IILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+L+ G KG R ++PN+R+M++QP G+ G D++ Q E + + + L +T
Sbjct: 135 FLLSSGTKGKRMSLPNSRVMIHQPLGGTQGQAVDIEIQAREILYHKRILNEILAQNT 191
>gi|39996891|ref|NP_952842.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
sulfurreducens PCA]
gi|409912312|ref|YP_006890777.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
sulfurreducens KN400]
gi|60389697|sp|Q74C82.1|CLPP_GEOSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|39983779|gb|AAR35169.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
sulfurreducens PCA]
gi|298505904|gb|ADI84627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
sulfurreducens KN400]
Length = 199
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G P++ VA I+Q++ L D D DI +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGG + S +AIYD M +IK V T+C G AAS A++L+GGEKG R+++ ++RIM+
Sbjct: 62 YINSPGGVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMI 121
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ E
Sbjct: 122 HQPLGGFQGQATDIHIHAQE 141
>gi|399949673|gb|AFP65331.1| ATP-dependent, proteolytic subunit [Chroomonas mesostigmatica
CCMP1168]
Length = 234
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 98/167 (58%), Gaps = 13/167 (7%)
Query: 67 CSTE--HSYKIISGKND-NPPLMP------AVMTPGGP----LDLSSVLFRNRIIFIGQP 113
C E H K I KN +MP A PG P +D+ + L+R RIIF+GQ
Sbjct: 17 CKIENLHFSKKIHKKNSATIKMMPIGVPKVAYRVPGAPSADWVDIYNRLYRERIIFLGQE 76
Query: 114 INSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV 173
I+ +A + I+ ++ L + D I +Y+N PGGS+ S LA+YD M IK +V T+ G+
Sbjct: 77 IDDEIANQIIAVMLYLDSEDNSKPIYLYINSPGGSVISGLAMYDTMRHIKSEVVTINVGL 136
Query: 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
AAS A+ ILA GEKG R A+P++RIM++QP G+ G D+K + +
Sbjct: 137 AASMASFILAAGEKGKRLALPHSRIMIHQPMGGAQGQASDIKVEAQQ 183
>gi|374814170|ref|ZP_09717907.1| ATP-dependent Clp protease proteolytic subunit [Treponema primitia
ZAS-1]
Length = 204
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+F+ IN + A ++Q++ L D DI +
Sbjct: 8 LVPVVVEQTGMGERSYDIYSRLLKDRIVFLDGEINDLTADLVVAQMLFLDGQDTAKDINL 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++K V T+C G AAS AA+IL G G R+ +P+AR+++
Sbjct: 68 YINSPGGSVTAGLAIYDTMQYLKADVQTICLGQAASMAALILTAGAAGKRFVLPSARVLM 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS 240
+QP G+ G D+ Q E + + +++ + HT D
Sbjct: 128 HQPWGGAQGQARDIGIQAQEIIRLKKLTIEYFAKHTGKDQ 167
>gi|126657142|ref|ZP_01728313.1| ATP-dependent protease; ClpP [Cyanothece sp. CCY0110]
gi|126621685|gb|EAZ92395.1| ATP-dependent protease; ClpP [Cyanothece sp. CCY0110]
Length = 147
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%), Gaps = 4/145 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ + + ++QL+ L D D DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRERIVFLGQEVRDENSNLIVAQLLFLEAEDPDKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISR 225
+QP G+ G D++ Q + ISR
Sbjct: 121 HQPLGGAQGQATDIEIQAKKFCISR 145
>gi|350572241|ref|ZP_08940546.1| ATP-dependent Clp protease, protease subunit [Neisseria wadsworthii
9715]
gi|349790497|gb|EGZ44406.1| ATP-dependent Clp protease, protease subunit [Neisseria wadsworthii
9715]
Length = 212
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ P+N A ++Q++ L + + D DI
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVNDHTANLVVAQMLFLESENPDKDIYF 69
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + ++I+D M+++KP V T+C G AAS A +L+ G KG R+A+PN+RIM+
Sbjct: 70 YINSPGGSVTAGMSIFDTMNFVKPDVSTLCLGQAASMGAFLLSAGTKGKRFALPNSRIMI 129
Query: 201 NQP--QSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G GG D++ E + + FL HT
Sbjct: 130 HQPLISGGLGGQASDIEIHARELIKIKEKLNYFLAKHT 167
>gi|33862948|ref|NP_894508.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9313]
gi|67460517|sp|Q7V7R2.1|CLPP3_PROMM RecName: Full=ATP-dependent Clp protease proteolytic subunit 3;
AltName: Full=Endopeptidase Clp 3
gi|33634865|emb|CAE20851.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9313]
Length = 197
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP V TVC G+AAS A +L G G R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|374321531|ref|YP_005074660.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
terrae HPL-003]
gi|357200540|gb|AET58437.1| ATP-dependent clp protease proteolytic subunit [Paenibacillus
terrae HPL-003]
Length = 198
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G +N +VA I+Q++ LA D + DI +Y+N PGGSI + +AI+
Sbjct: 19 DIYSRLLKDRIILLGSDVNDVVANSIIAQMLFLAAEDPEKDIHLYVNSPGGSITAGMAIF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +L G KG R+A+PN+ IM++QP G+ G D++
Sbjct: 79 DTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIMIHQPLGGAQGQATDIE 137
>gi|224013265|ref|XP_002295284.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969007|gb|EED87350.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 198
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 89/147 (60%)
Query: 86 MPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCP 145
MP V D+ S L ++RII +GQ ++ +A ++QL+ LA D DI +Y+N P
Sbjct: 1 MPVVDDGTSQKDVLSRLLQDRIILLGQGVDDEIANVLVAQLLYLANEDPTKDITLYINSP 60
Query: 146 GGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS 205
GGS+ + +AIYD M ++ V TVCFG+AAS A +L G G R A+PNARIM++QP
Sbjct: 61 GGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAPGKRRALPNARIMIHQPLG 120
Query: 206 GSGGHVEDVKRQVNEAVISRHVSLSFL 232
G+ G D++ Q E + R V +++
Sbjct: 121 GAQGQAADIEIQAKEILFIREVLNTYI 147
>gi|241116836|ref|XP_002401631.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
scapularis]
gi|215493175|gb|EEC02816.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
scapularis]
Length = 205
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + + ++QL+ L + DI MY+N PGG I + LAIY
Sbjct: 23 DIYSRLLKERIIFVCSTVEDHMTNLIVAQLLFLEAENPKKDIYMYINSPGGVITAGLAIY 82
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 83 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 142
Query: 217 QVNEAV 222
E +
Sbjct: 143 HAQETL 148
>gi|289523086|ref|ZP_06439940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503629|gb|EFD24793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 194
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G I +A ++Q++ L + D D DI +
Sbjct: 4 LVPIVIEQTGRGERAYDIYSRLLKDRIIFLGDVIEEHLANLVVAQMLFLESEDPDKDINL 63
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L IYD M +IK V T+C G AAS AA++LA G KG R A+PN+R+ML
Sbjct: 64 YINSPGGSVTAGLGIYDTMQYIKCPVSTICVGQAASMAAVLLAAGAKGKRIALPNSRVML 123
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G G D++ E R + HT D
Sbjct: 124 HQPLGGVQGQATDIEIHAKEIKKIRDRLNEIIAYHTNQD 162
>gi|239948026|ref|ZP_04699779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922302|gb|EER22326.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 201
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ + + ++QL+ L + DI MY+N PGG I + LAIY
Sbjct: 19 DIYSRLLKERIIFVCSTVEDHMTNLIVAQLLFLEAENPKKDIYMYINSPGGVITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKPKV T+C G A S +++L GGEKGMRY++P++RIM++QP G G D++
Sbjct: 79 DTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEI 138
Query: 217 QVNEAV 222
E +
Sbjct: 139 HAQETL 144
>gi|434405726|ref|YP_007148611.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Cylindrospermum stagnale PCC 7417]
gi|428259981|gb|AFZ25931.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Cylindrospermum stagnale PCC 7417]
Length = 201
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDNSIANLIVAQLLFLDAEDSEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKRRLNDYLAEHT 156
>gi|297566268|ref|YP_003685240.1| endopeptidase Clp [Meiothermus silvanus DSM 9946]
gi|296850717|gb|ADH63732.1| Endopeptidase Clp [Meiothermus silvanus DSM 9946]
Length = 196
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 90/142 (63%), Gaps = 2/142 (1%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI++ VA ++Q++ L + DI +Y+NCPGG + + LAIY
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAAVANTIVAQMLFLDAQNSQQDIRLYINCPGGEVTAGLAIY 77
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP--QSGSGGHVEDV 214
D M +++ V T+C G+AAS A++LA G G RYA+P+A IM++QP G GG V D+
Sbjct: 78 DTMQFVRSPVSTICVGMAASFGAVLLAAGAPGKRYALPHANIMIHQPWVSGGLGGQVSDI 137
Query: 215 KRQVNEAVISRHVSLSFLLLHT 236
+V E ++ + L HT
Sbjct: 138 MIRVEELAKNKRLLNEILAKHT 159
>gi|255067667|ref|ZP_05319522.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
sicca ATCC 29256]
gi|340362161|ref|ZP_08684558.1| ATP-dependent Clp protease, protease subunit [Neisseria macacae
ATCC 33926]
gi|349609434|ref|ZP_08888828.1| ATP-dependent Clp protease proteolytic subunit [Neisseria sp.
GT4A_CT1]
gi|255048141|gb|EET43605.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
sicca ATCC 29256]
gi|339887762|gb|EGQ77284.1| ATP-dependent Clp protease, protease subunit [Neisseria macacae
ATCC 33926]
gi|348611857|gb|EGY61487.1| ATP-dependent Clp protease proteolytic subunit [Neisseria sp.
GT4A_CT1]
Length = 206
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D D
Sbjct: 6 NNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKD 65
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+R
Sbjct: 66 IFFYINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSR 125
Query: 198 IMLNQP--QSGSGGHVEDVKRQVNE 220
IM++QP G GG D++ E
Sbjct: 126 IMIHQPLISGGLGGQASDIEIHARE 150
>gi|124023248|ref|YP_001017555.1| ATP-dependent Clp protease proteolytic subunit [Prochlorococcus
marinus str. MIT 9303]
gi|123963534|gb|ABM78290.1| Clp protease subunit [Prochlorococcus marinus str. MIT 9303]
Length = 197
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ S A R ++Q++ L D + DI +
Sbjct: 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP V TVC G+AAS A +L G G R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>gi|17028170|gb|AAL34333.1|L41144_1 ClpP [Brassica oleracea]
Length = 279
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 82/130 (63%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
LD +++L R RI+F+G ++ M A ISQL+ L D + DI +++N PGGSI + + I
Sbjct: 54 LDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAQDSERDITLFINSPGGSITAGMGI 113
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M K V TVC G+AAS A +LA G KG RY MPN+++M++QP +GG ++
Sbjct: 114 YDAMKQCKADVSTVCLGIAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGSAGGKATEMS 173
Query: 216 RQVNEAVISR 225
+V E + +
Sbjct: 174 IRVREMMYHK 183
>gi|261377747|ref|ZP_05982320.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
cinerea ATCC 14685]
gi|269146032|gb|EEZ72450.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
cinerea ATCC 14685]
Length = 206
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D D
Sbjct: 6 NNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKD 65
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+R
Sbjct: 66 IFFYINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSR 125
Query: 198 IMLNQP--QSGSGGHVEDVKRQVNE 220
IM++QP G GG D++ E
Sbjct: 126 IMIHQPLISGGLGGQASDIEIHARE 150
>gi|449456777|ref|XP_004146125.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic-like [Cucumis sativus]
Length = 293
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 81/137 (59%)
Query: 84 PLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLN 143
P P G D +L R RI+F+G I+ VA ISQL+ L D DI +++N
Sbjct: 67 PQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDIRLFIN 126
Query: 144 CPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQP 203
GGS+ S +AIYD + ++ V T+ G+AAS A+IIL GG KG R AMPNARIM++QP
Sbjct: 127 SAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQP 186
Query: 204 QSGSGGHVEDVKRQVNE 220
G+ G DV+ Q E
Sbjct: 187 LGGASGLALDVEIQARE 203
>gi|408671222|ref|YP_006871293.1| ATP-dependent Clp protease proteolytic component [Borrelia garinii
NMJW1]
gi|407241044|gb|AFT83927.1| ATP-dependent Clp protease proteolytic component [Borrelia garinii
NMJW1]
Length = 197
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L R RIIF+ IN A I+QL+ L + D + DI +
Sbjct: 7 LIPTVIEHTGNYERVFDIYSRLLRERIIFLSGEINDSKADTVIAQLLFLESEDSNKDIYL 66
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGGSI + LAIYD M +IKP V T+C G AAS A +LA G +G R ++ +RIM+
Sbjct: 67 YLNSPGGSITAGLAIYDTMQYIKPDVRTICIGQAASMGAFLLASGARGKRESLAYSRIMI 126
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G G D+ Q NE
Sbjct: 127 HQPWGGISGQASDINIQANE 146
>gi|89098789|ref|ZP_01171670.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. NRRL
B-14911]
gi|89086465|gb|EAR65585.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp. NRRL
B-14911]
Length = 201
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ V+ ++QL+ L + + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVSNSIVAQLLFLEAENPEKDITLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +I+PKV TVC G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQYIRPKVSTVCIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|333997879|ref|YP_004530491.1| Clp protease [Treponema primitia ZAS-2]
gi|333741165|gb|AEF86655.1| Clp protease [Treponema primitia ZAS-2]
Length = 204
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+F+ IN + A ++QL+ L D DI +
Sbjct: 8 LVPVVVEQTGMGERSYDIYSRLLKDRIVFLDGEINDLTADLVVAQLLFLDGQDTAKDINL 67
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++K V T+C G AAS AA+IL G G R+ +P++R+++
Sbjct: 68 YINSPGGSVTAGLAIYDTMQYVKADVQTICLGQAASMAALILTAGAAGKRFVLPSSRVLM 127
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS 240
+QP G+ G D+ Q E + + +++ + HT D
Sbjct: 128 HQPWGGAQGQARDIGIQAQEIIRLKKLTIEYFAKHTGKDQ 167
>gi|308233830|ref|ZP_07664567.1| ATP-dependent Clp protease proteolytic subunit ClpP [Atopobium
vaginae DSM 15829]
gi|328943800|ref|ZP_08241265.1| ATP-dependent Clp protease, protease subunit [Atopobium vaginae DSM
15829]
gi|327491769|gb|EGF23543.1| ATP-dependent Clp protease, protease subunit [Atopobium vaginae DSM
15829]
Length = 204
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 84 PLMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ TP G D+ S L +RI+F+G+ I A I+QL+ L + D D DI
Sbjct: 8 PLIPYVVEQTPRGERSYDIFSRLLNDRIVFLGEAITRDSANLVIAQLLHLESQDPDKDIA 67
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
+Y++ PGG +Y+ L I D M++IKP V T+C G+AAS A+++LA G KG R +PN+ +M
Sbjct: 68 LYIDSPGGEVYAGLGILDTMNFIKPDVSTICVGMAASMASVLLAAGAKGKRMCLPNSMVM 127
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP SG+ G D++ +E R+ L +T
Sbjct: 128 IHQPSSGAQGQQTDIQIVADETKWIRNHMNELLAQYT 164
>gi|125975222|ref|YP_001039132.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum ATCC 27405]
gi|256003116|ref|ZP_05428108.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum DSM 2360]
gi|281419196|ref|ZP_06250212.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum JW20]
gi|385777706|ref|YP_005686871.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum DSM 1313]
gi|419722741|ref|ZP_14249878.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum AD2]
gi|419726242|ref|ZP_14253265.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum YS]
gi|166201818|sp|A3DJ10.1|CLPP_CLOTH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|125715447|gb|ABN53939.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum ATCC 27405]
gi|255992807|gb|EEU02897.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum DSM 2360]
gi|281407062|gb|EFB37324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum JW20]
gi|316939386|gb|ADU73420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Clostridium
thermocellum DSM 1313]
gi|380770294|gb|EIC04191.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum YS]
gi|380781121|gb|EIC10782.1| ATP-dependent Clp protease proteolytic subunit [Clostridium
thermocellum AD2]
Length = 194
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 78/119 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + IN + A ++Q++ L D D DI +Y+N PGGS+ + AIY
Sbjct: 19 DIYSRLLKDRIIVLSDEINDVTASLVVAQMLFLEAEDPDKDIQLYINSPGGSVTAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M ++KP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G D+K
Sbjct: 79 DTMQYVKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGARGQATDIK 137
>gi|428779425|ref|YP_007171211.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dactylococcopsis salina PCC 8305]
gi|428693704|gb|AFZ49854.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Dactylococcopsis salina PCC 8305]
Length = 199
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ ++ + ++Q++ L D + DI +
Sbjct: 1 MIPTVIETSGRGERAFDIYSRLLRERIIFLGQQVDDEIGNLIVAQMLYLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L I+D M+ ++P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVSAGLGIFDTMNQVRPDVSTICLGLAASMGAFLLSAGAKGKRLSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYLKQQLNHYLSEHT 156
>gi|119512812|ref|ZP_01631880.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
gi|119462534|gb|EAW43503.1| Peptidase S14, ClpP [Nodularia spumigena CCY9414]
Length = 232
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L + D + DI +
Sbjct: 30 MIPIVVEQSGRGERAFDIYSRLLRERIIFLGQQVDNEIANLIVAQLLFLDSEDSEKDIYL 89
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+ AS A +L+ G KG R ++P++RIM+
Sbjct: 90 YINSPGGSVMAGMGIFDTMKHIRPDVCTICTGLGASMGAFLLSAGAKGKRMSLPHSRIMI 149
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 150 HQPLGGAQGQATDIEIQAREILYHKQRLNEYLAEHT 185
>gi|437999901|ref|YP_007183634.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451812827|ref|YP_007449280.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339135|gb|AFZ83557.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451778796|gb|AGF49676.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 210
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 89/145 (61%), Gaps = 4/145 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L + RI+F+ P+ A I+QL+ L + D DI +Y
Sbjct: 19 VPTVIEKSGRSERAYDIYSRLLKERIVFLSGPVTDHSANLVIAQLLFLESDDPSKDISLY 78
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+Y+ +AI+D M++IKP V T+C G+AAS A +LA G KG R+++PNA +M++
Sbjct: 79 INSPGGSVYAGMAIFDTMNFIKPHVSTMCIGIAASMGAFLLAAGTKGKRFSLPNACMMIH 138
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRH 226
QP G+ G D++ E + R+
Sbjct: 139 QPSGGAQGQASDIQIHAEEILRLRN 163
>gi|319650519|ref|ZP_08004659.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
2_A_57_CT2]
gi|317397700|gb|EFV78398.1| ATP-dependent Clp protease proteolytic subunit [Bacillus sp.
2_A_57_CT2]
Length = 201
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ L + + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLEAENPEKDISIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GEKG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPKVQTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|335047467|ref|ZP_08540488.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Parvimonas sp. oral taxon 110 str. F0139]
gi|333761275|gb|EGL38830.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Parvimonas sp. oral taxon 110 str. F0139]
Length = 192
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ +N +A ++QL+ L + D DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKERIIFLSGEVNDQMADLIVAQLLFLESEDPKKDIQIYINSPGGSVSAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D + +IKP V T+C G AAS A +L G KG R+A+PNA IM++QP G+ G ED+K
Sbjct: 79 DTIQYIKPDVSTICIGRAASMGAFLLTSGAKGKRFALPNADIMIHQPLGGAQGQAEDIKI 138
Query: 217 QVNEAVISR 225
Q + + R
Sbjct: 139 QAQKILQVR 147
>gi|262199481|ref|YP_003270690.1| endopeptidase Clp [Haliangium ochraceum DSM 14365]
gi|262082828|gb|ACY18797.1| Endopeptidase Clp [Haliangium ochraceum DSM 14365]
Length = 202
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 96/163 (58%)
Query: 74 KIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 133
+I +G NP ++ + D+ S L ++RI+F+G +N VA +QL+ L + D
Sbjct: 3 RIYNGYIPNPYVVESSHRGERTWDIYSRLLKDRIVFLGTEVNDDVANMITAQLLYLESED 62
Query: 134 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 193
+ +I++Y+N PGGS+ + +AIYD M I+ V TVC G AAS A++LA G G+R ++
Sbjct: 63 AEKEIMLYINSPGGSVTAGMAIYDTMQHIRCPVATVCVGQAASMGALLLAAGSAGLRRSL 122
Query: 194 PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
PN+RIM++QP S G D++ E + +R + L HT
Sbjct: 123 PNSRIMIHQPSSAFRGQASDIEIHAKEILHTRQRTNEILAHHT 165
>gi|205375127|ref|ZP_03227918.1| ATP-dependent Clp protease proteolytic subunit [Bacillus
coahuilensis m4-4]
Length = 198
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII +G I+ VA ++QL+ L T + + DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLETENPEKDISLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKPKV T+C G+AAS A +LA GE G R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQYIKPKVQTICIGMAASMGAFLLAAGEPGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>gi|225446742|ref|XP_002282652.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
chloroplastic [Vitis vinifera]
Length = 291
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 82/134 (61%)
Query: 87 PAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG 146
P + G D +L + RI+F+G ++ VA ISQL+ L D DI +++N PG
Sbjct: 68 PGMGARGAEADAMGLLLKERIVFLGNNVDDFVADAIISQLLLLDAQDPTKDIRLFINSPG 127
Query: 147 GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206
GS+ + +AIYD + ++ V TV G++AS A+IIL GG KG R+AMPN RIM++QP G
Sbjct: 128 GSLSATMAIYDIVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGG 187
Query: 207 SGGHVEDVKRQVNE 220
+ G DV+ Q E
Sbjct: 188 ASGQAIDVEIQAQE 201
>gi|148553517|ref|YP_001261099.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas
wittichii RW1]
gi|148498707|gb|ABQ66961.1| Endopeptidase Clp [Sphingomonas wittichii RW1]
Length = 218
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 82/131 (62%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R RIIF+ + +A +QL+ L + + DI MY+N PGG + + LAI
Sbjct: 33 FDIYSRLLRERIIFVTGQVEDHMASLITAQLLFLESENPKKDIFMYINSPGGVVTAGLAI 92
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
+D M +I+P+VGTVC G AAS + +LA GE GMR A+ N+RIM++QP G+ G D++
Sbjct: 93 HDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTNSRIMVHQPSGGAQGMAADIE 152
Query: 216 RQVNEAVISRH 226
Q E + RH
Sbjct: 153 IQAREILRMRH 163
>gi|331090536|ref|ZP_08339389.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330405879|gb|EGG85407.1| ATP-dependent Clp protease proteolytic subunit [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 193
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ + + A ++QL+ L D + DI +Y+N PGGS+ + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVTDVSASIIVAQLLHLEAEDPEKDIQLYINSPGGSVSAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG------- 209
D M +IK V T C G+AAS A +LAGG KG R+A+PNA IM++QP G+ G
Sbjct: 79 DTMQYIKCDVSTTCIGMAASMGAFLLAGGAKGKRFALPNAEIMIHQPLGGAQGQATEIQI 138
Query: 210 ---HVEDVKRQVNEAVISR 225
H+ ++++NE + R
Sbjct: 139 AAEHILKTRQKLNEILAER 157
>gi|253996690|ref|YP_003048754.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
mobilis JLW8]
gi|253983369|gb|ACT48227.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylotenera
mobilis JLW8]
Length = 214
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 4/155 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L + R+IF+ P+N M A ++QL+ L + D DI +Y
Sbjct: 21 IPMVIEQSGRGERSFDIYSRLLKERVIFLVGPVNDMSANLVVAQLLFLEAENPDKDISLY 80
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+ + ++IYD M +IKP V T+C G AAS A +LA G K RY++PN+RIM++
Sbjct: 81 INSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLAAGAKDKRYSLPNSRIMIH 140
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
QP G G D++ E + R L HT
Sbjct: 141 QPSGGFQGQSSDIEIHAKEILYLRAKLNDILAHHT 175
>gi|443312110|ref|ZP_21041730.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechocystis
sp. PCC 7509]
gi|442777788|gb|ELR88061.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Synechocystis
sp. PCC 7509]
Length = 202
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RI+F+GQ ++S +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIVFLGQKVDSNLANLIVAQLLFLDAEDAEKDIFL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D + I+P V T+C G+AAS A +L+ G KG R ++PN+RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTIKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAKEILYHKRKLNEHLAEHT 156
>gi|162148815|ref|YP_001603276.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545437|ref|YP_002277666.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787392|emb|CAP56987.1| ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
1) [Gluconacetobacter diazotrophicus PAl 5]
gi|209533114|gb|ACI53051.1| Endopeptidase Clp [Gluconacetobacter diazotrophicus PAl 5]
Length = 212
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 85/141 (60%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L + RIIF+ P+ VA +QL+ L +++ +I Y+N PGG + + LAI
Sbjct: 29 FDIYSRLLQERIIFLTGPVYDQVAAVVSAQLLYLESVNPTKEISFYINSPGGVVSAGLAI 88
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +I+ V TVC G AAS +++LAGGEKG R+A+PNAR+M++QP G+ G D++
Sbjct: 89 YDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRRFALPNARVMVHQPSGGAQGQASDIE 148
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + R HT
Sbjct: 149 IQAREILTIRQRLNEIYETHT 169
>gi|427718283|ref|YP_007066277.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 7507]
gi|427350719|gb|AFY33443.1| ATP-dependent Clp protease proteolytic subunit ClpP [Calothrix sp.
PCC 7507]
Length = 201
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+GQ +++ +A ++QL+ L D + DI +
Sbjct: 1 MIPIVIEQSGRGERAFDIYSRLLRERIIFLGQQVDNSIANLIVAQLLFLDADDSEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + + I+D M I+P V T+C G+AAS A +L+ G KG R ++P++RIM+
Sbjct: 61 YINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + +L HT
Sbjct: 121 HQPLGGAQGQATDIEIQAREILYHKKRLNDYLAEHT 156
>gi|261364459|ref|ZP_05977342.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
mucosa ATCC 25996]
gi|419795668|ref|ZP_14321253.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sicca VK64]
gi|288567379|gb|EFC88939.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Neisseria
mucosa ATCC 25996]
gi|385700246|gb|EIG30498.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sicca VK64]
Length = 206
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
N L+P V+ G D+ S L + RI+F+ P+ A ++QL+ L + + D D
Sbjct: 6 NNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLIGPVTDESANLVVAQLLFLESENPDKD 65
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I Y+N PGGS+ + ++IYD M++IKP V T+C G AAS A +L+ GEKG R+A+PN+R
Sbjct: 66 IFFYINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSR 125
Query: 198 IMLNQP--QSGSGGHVEDVKRQVNE 220
IM++QP G GG D++ E
Sbjct: 126 IMIHQPLISGGLGGQASDIEIHARE 150
>gi|5360593|dbj|BAA82068.1| nClpP4 [Arabidopsis thaliana]
Length = 299
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 84/134 (62%)
Query: 93 GGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV 152
G D+ +L R RI+F+G I+ VA +SQL+ L D DI +++N PGGS+ +
Sbjct: 82 GAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSAT 141
Query: 153 LAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVE 212
+AIYD + ++ V T+ G+AAS A+IIL G KG R+AMPN RIM++QP G+ G
Sbjct: 142 MAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAI 201
Query: 213 DVKRQVNEAVISRH 226
DV+ Q E + +++
Sbjct: 202 DVEIQAKEVMHNKN 215
>gi|392407107|ref|YP_006443715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
mobile DSM 13181]
gi|390620243|gb|AFM21390.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
mobile DSM 13181]
Length = 192
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G I +A ++Q++ L + D D DI +
Sbjct: 2 LVPIVIEQTGRGERAYDIYSRLLKDRIIFLGDVIEDHIANLVVAQMLFLESEDPDKDINL 61
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + L IYD M +IK + T+C G AAS AA++LA G KG R A+PN+R+ML
Sbjct: 62 YINSPGGSVTAGLGIYDTMQYIKCPISTICVGQAASMAAVLLAAGTKGKRIALPNSRVML 121
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G G D++ E R + HT D
Sbjct: 122 HQPLGGVQGQATDIEIHAKEIKKIRDRLNEIIAKHTNQD 160
>gi|374369272|ref|ZP_09627306.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
basilensis OR16]
gi|373099185|gb|EHP40272.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
basilensis OR16]
Length = 216
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R+IF+ +N A ++QL+ L + + D DI +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERLIFMVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M ++KP V T+C G+AAS A +L+ G KG R A+PN+RIM+
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFVKPDVATLCMGMAASMGAFLLSAGAKGKRSALPNSRIMI 144
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 145 HQPLGGARGQASDIEIQAREILYLRE 170
>gi|444375828|ref|ZP_21175080.1| ATP-dependent Clp protease proteolytic subunit [Enterovibrio sp.
AK16]
gi|443680056|gb|ELT86704.1| ATP-dependent Clp protease proteolytic subunit [Enterovibrio sp.
AK16]
Length = 207
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 79 KNDNPPLMPAVM------TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLA 130
KN P +M A++ T G D+ S L + R+IF+ + +A ++QL+ L
Sbjct: 6 KNGMPSIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLE 65
Query: 131 TIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMR 190
+ + D DI +Y+N PGGS+ + ++IYD M +IKP V TVC G A S A +LAGG KG R
Sbjct: 66 SENPDKDIFLYINSPGGSVTAGMSIYDTMQYIKPDVSTVCMGQACSMGAFLLAGGAKGKR 125
Query: 191 YAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
Y +PN+R+M++QP G G D++ E + + + L HT
Sbjct: 126 YCLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIKQKLNTLLAEHT 171
>gi|402830487|ref|ZP_10879189.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Capnocytophaga sp. CM59]
gi|402285320|gb|EJU33807.1| putative ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Capnocytophaga sp. CM59]
Length = 220
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 9/140 (6%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
+D+ S L +RIIF+G +NS VA +QL+ L ++D DI +Y+N PGG +YS L I
Sbjct: 44 MDVFSRLMMDRIIFLGTDVNSNVANIIQAQLLFLESVDASKDIQIYINSPGGEVYSGLGI 103
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G+AAS AA++L G G R A+P++R+M++QP G+ G D++
Sbjct: 104 YDTMQFIKPDVATICTGMAASMAAVLLCAGAHGKRSALPHSRVMIHQPLGGAQGQASDIE 163
Query: 216 RQVNEA---------VISRH 226
E +I+RH
Sbjct: 164 ITAREILKIKEELALIIARH 183
>gi|386285277|ref|ZP_10062493.1| ATP-dependent Clp protease proteolytic subunit [Sulfurovum sp. AR]
gi|385343796|gb|EIF50516.1| ATP-dependent Clp protease proteolytic subunit [Sulfurovum sp. AR]
Length = 195
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 80/124 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RII + +N VA ++QL+ L D D DI Y+N PGG I S L+++
Sbjct: 19 DIYSRLLKDRIIMLSGEVNDQVASTVVAQLLFLEAQDPDKDIYFYINSPGGVITSGLSMF 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP + T+C G AAS A +L+ G KG RYA+P+ARIM++QP G+ G D++
Sbjct: 79 DTMNYIKPDIVTICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPSGGAQGQSTDIQI 138
Query: 217 QVNE 220
Q E
Sbjct: 139 QAQE 142
>gi|413962707|ref|ZP_11401934.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
SJ98]
gi|413928539|gb|EKS67827.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
SJ98]
Length = 217
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + R++F+ +N A ++QL+ L + + D DI +
Sbjct: 26 LVPMVVETSGRGERAYDIYSRLLKERVVFLVGEVNDQSANLVVAQLLFLESENPDKDISL 85
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG R A+PNAR+M+
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLAAGAKGKRVALPNARVMI 145
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 146 HQPLGGARGQASDIEIQAREILYLKERLNQLLSHHT 181
>gi|153813468|ref|ZP_01966136.1| hypothetical protein RUMOBE_03888 [Ruminococcus obeum ATCC 29174]
gi|149830412|gb|EDM85504.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Ruminococcus obeum ATCC 29174]
Length = 193
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G+ +N + A ++QL+ L D DI +Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGEEVNDVSASVIVAQLLFLEAEDPSKDIQLYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG------- 209
D M +IK V T+C G+AAS A +LAGG KG R+A+P++ IM++QP G+ G
Sbjct: 79 DTMKYIKCDVSTICLGMAASMGAFLLAGGTKGKRFALPHSTIMIHQPSGGAQGQATEIQI 138
Query: 210 ---HVEDVKRQVNE 220
H+ KR +NE
Sbjct: 139 VADHIAQTKRTLNE 152
>gi|335042770|ref|ZP_08535797.1| protease subunit of ATP-dependent Clp protease [Methylophaga
aminisulfidivorans MP]
gi|333789384|gb|EGL55266.1| protease subunit of ATP-dependent Clp protease [Methylophaga
aminisulfidivorans MP]
Length = 210
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 85/143 (59%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ P+ +A ++QL+ L + + D DI +Y+N PGG++ + LAIY
Sbjct: 33 DIFSRLLKERVIFLVGPVEDQMANLVVAQLLFLESENPDKDIHLYINSPGGAVTAGLAIY 92
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G AAS A++LAGG +G RY +PN+RIM++QP G G D
Sbjct: 93 DTMQFIKPNVSTLCIGQAASMGAVLLAGGAEGKRYCLPNSRIMVHQPLGGFQGQASDFDI 152
Query: 217 QVNEAVISRHVSLSFLLLHTLND 239
E + R L HT D
Sbjct: 153 HAKEILSIRDRLNGILAKHTGQD 175
>gi|329894939|ref|ZP_08270738.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium IMCC3088]
gi|328922668|gb|EGG30003.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium IMCC3088]
Length = 200
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 83/140 (59%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + R+IF+ + +A ++QL+ L + + D DI +Y+N PGGS+ + LAIY
Sbjct: 25 DIYSRLLKERVIFVVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGLAIY 84
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T C G AAS A +L+ G KG RY +PNAR M++QP G+ G D+
Sbjct: 85 DTMKFIKPDVTTTCMGQAASMGAFLLSAGAKGKRYCLPNARTMIHQPSGGAQGQATDIDI 144
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E +I R + HT
Sbjct: 145 QAKEILIIRERLNRLMAEHT 164
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,638,440,424
Number of Sequences: 23463169
Number of extensions: 146770003
Number of successful extensions: 345335
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5802
Number of HSP's successfully gapped in prelim test: 693
Number of HSP's that attempted gapping in prelim test: 338740
Number of HSP's gapped (non-prelim): 6538
length of query: 240
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 102
effective length of database: 9,121,278,045
effective search space: 930370360590
effective search space used: 930370360590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)