BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026362
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SAA2|CLPP6_ARATH ATP-dependent Clp protease proteolytic subunit 6, chloroplastic
OS=Arabidopsis thaliana GN=CLPP6 PE=1 SV=1
Length = 271
Score = 308 bits (790), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/219 (69%), Positives = 174/219 (79%), Gaps = 7/219 (3%)
Query: 10 LSFSATSLNRTFASFFSN--RNSSRSIVSALPSPYGDSSSGGLSIRNRGLPLKIDEKDFC 67
LSFS+ + N SF S+ RN R IVSAL SPYGDS GLS G P+KID K
Sbjct: 12 LSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNK--- 68
Query: 68 STEHSYKIISGKNDNPPLMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
+ +I K NPP+MP+VMTPGGPLDLSSVLFRNRIIFIGQPIN+ VAQR ISQLV
Sbjct: 69 --APRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLV 126
Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
TLA+ID+ +DILMYLNCPGGS YSVLAIYDCMSWIKPKVGTV FGVAASQ A++LAGGEK
Sbjct: 127 TLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEK 186
Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
GMRYAMPN R+M++QPQ+G GGHVEDV+RQVNEA+ +R
Sbjct: 187 GMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQ 225
>sp|Q8KC73|CLPP_CHLTE ATP-dependent Clp protease proteolytic subunit OS=Chlorobium
tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=clpP
PE=3 SV=1
Length = 225
Score = 134 bits (336), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG +N L+P V+ G D+ S L R RIIF+G PI+
Sbjct: 5 NFGFDHHAKKLYSGAIENSINSQLVPMVIETSGRGERAFDIFSRLLRERIIFLGSPIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA I+QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P + TVC G+AAS
Sbjct: 65 VAGLIIAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
A +LA G G R ++P++RIM++QP G+ G D+ Q E RH+ L HT
Sbjct: 125 GAFLLASGTSGKRASLPHSRIMIHQPSGGAQGQETDILIQAREIEKIRHLLEDLLAKHT 183
>sp|A7HFV9|CLPP_ANADF ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
sp. (strain Fw109-5) GN=clpP PE=3 SV=1
Length = 204
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 84/124 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPGGSVTSGLAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++QP G G D+
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQGQATDIDI 140
Query: 217 QVNE 220
Q E
Sbjct: 141 QARE 144
>sp|Q13UT1|CLPP1_BURXL ATP-dependent Clp protease proteolytic subunit 1 OS=Burkholderia
xenovorans (strain LB400) GN=clpP1 PE=3 SV=1
Length = 215
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 72 SYKIISGKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLV 127
SY I+G L+P V+ G D+ S L R RI+F+ P+N A ++QL+
Sbjct: 4 SYPTITGLG----LVPTVIEQSGRGERAYDIYSRLLRERIVFLVGPVNEQSASVIVAQLL 59
Query: 128 TLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEK 187
L + + D DI Y+N PGGS+Y LAIYD M +IKP+V T+C G AAS +L G++
Sbjct: 60 FLESENPDKDISFYINSPGGSVYDGLAIYDTMQFIKPEVSTLCTGFAASMGTFLLTAGQR 119
Query: 188 GMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRH 226
G RYA+PNARIM++QP GS G DV+ Q E + R
Sbjct: 120 GKRYALPNARIMIHQPSGGSQGTAADVEIQAKEVLYLRE 158
>sp|A0LEF1|CLPP_SYNFM ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1
Length = 202
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 87/141 (61%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R+RIIF+G I VA I+QL+ L + D D DI Y+N PGG + + LAI
Sbjct: 18 FDIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPGGLVTAGLAI 77
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M +IKP V T+C G AAS AAI+LA G KG RYA+P+ RIML+QP G G DV+
Sbjct: 78 YDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGFQGQATDVE 137
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + R L+ HT
Sbjct: 138 IQAKEILKLREELNDILVRHT 158
>sp|Q59993|CLPP2_SYNY3 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpP2 PE=3 SV=1
Length = 226
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 4/163 (2%)
Query: 78 GKNDNPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATID 133
G N+ ++P V+ G D+ S L R RIIF+G P++ VA ++QL+ L D
Sbjct: 16 GGNNIQSVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAED 75
Query: 134 EDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM 193
+ DI +Y+N PGGS+Y+ LAIYD M I+P V T+CFG+AAS A +L+GG KG R A+
Sbjct: 76 PEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMAL 135
Query: 194 PNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
P++RIM++QP G+ G +++ Q E + + + L+ HT
Sbjct: 136 PSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHT 178
>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp.
(strain RQ2) GN=clpP PE=3 SV=1
Length = 203
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 84/119 (70%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVE 146
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=clpP PE=3 SV=1
Length = 203
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 84/119 (70%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVE 146
>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpP PE=3 SV=1
Length = 203
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 84/119 (70%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA I+QL+ L D D D+ +Y+N PGGS+ + LAIY
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIY 87
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IK V T+C G AAS AA++LA G KG RYA+PNARIM++QP G+ G +DV+
Sbjct: 88 DTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVE 146
>sp|C0QGT0|CLPP_DESAH ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium
autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)
GN=clpP PE=3 SV=1
Length = 205
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Query: 84 PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADIL 139
PL+P V+ D+ S L ++RIIF+G ++ VA ++QL+ L + D + DI
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDIN 61
Query: 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIM 199
Y+N PGG + + +A+YD M +IKP V TVC G AAS A++LA G KG R+++PN+RIM
Sbjct: 62 FYINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIM 121
Query: 200 LNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
++QP G+ G D+K Q NE + + V L HT
Sbjct: 122 IHQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHT 158
>sp|Q5N665|CLPP1_SYNP6 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP1 PE=3 SV=1
Length = 197
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ S VA R ++QL+ L D + DI +
Sbjct: 1 MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M+ I+P V TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G +D++ Q NE
Sbjct: 121 HQPLGGAQGQAKDIEIQANE 140
>sp|P54415|CLPP1_SYNE7 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1
Length = 197
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+P+ S VA R ++QL+ L D + DI +
Sbjct: 1 MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M+ I+P V TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G +D++ Q NE
Sbjct: 121 HQPLGGAQGQAKDIEIQANE 140
>sp|Q2IEW1|CLPP_ANADE ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=clpP PE=3 SV=1
Length = 203
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 86/126 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 217 QVNEAV 222
Q EA+
Sbjct: 141 QAKEAL 146
>sp|B8J5G7|CLPP_ANAD2 ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=clpP PE=3
SV=1
Length = 203
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 86/126 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 217 QVNEAV 222
Q EA+
Sbjct: 141 QAKEAL 146
>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-2-3B'a(2-13)) GN=clpP2 PE=3 SV=1
Length = 200
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R+RIIF+G ++ +A ++Q++ L + D + DI +Y+N PGGS+Y+ +AI
Sbjct: 16 FDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAI 75
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C G+AAS A +LAGG KG R A+P+ARIM++QP G+ G D++
Sbjct: 76 YDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIE 135
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + ++ S L HT
Sbjct: 136 IQAKEILFIKNSLNSLLAYHT 156
>sp|B4UAX9|CLPP_ANASK ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter
sp. (strain K) GN=clpP PE=3 SV=1
Length = 203
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 86/126 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G P++ VA I+QL+ L + D D DI +Y+N PGGS+ S LAIY
Sbjct: 21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPGGSVTSGLAIY 80
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP+V T+C G AAS A +LAGG G R+A+PNARIM++Q G G D++
Sbjct: 81 DTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQLSGGFQGQATDIEI 140
Query: 217 QVNEAV 222
Q EA+
Sbjct: 141 QAKEAL 146
>sp|Q2JV68|CLPP2_SYNJA ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1
Length = 200
Score = 130 bits (327), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%)
Query: 96 LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI 155
D+ S L R+RIIF+G ++ +A ++Q++ L + D + DI +Y+N PGGS+Y+ +AI
Sbjct: 16 FDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAI 75
Query: 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
YD M I+P V T+C G+AAS A +LAGG KG R A+P+ARIM++QP G+ G D++
Sbjct: 76 YDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIE 135
Query: 216 RQVNEAVISRHVSLSFLLLHT 236
Q E + ++ S L HT
Sbjct: 136 IQAKEILFIKNSLNSLLAYHT 156
>sp|Q7UZK7|CLPP3_PROMP ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4)
GN=clpP3 PE=3 SV=1
Length = 215
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D DI +Y
Sbjct: 25 VPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPHKDIQIY 84
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+ + LAIYD M I P V T+CFGVAAS A +L+GG KG R A+PN+RIM++
Sbjct: 85 INSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 144
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
QP G+ G +++ Q E + + S L HT
Sbjct: 145 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHT 179
>sp|Q317Y6|CLPP4_PROM9 ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus
marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1
Length = 219
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 93/155 (60%), Gaps = 4/155 (2%)
Query: 86 MPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMY 141
+P V+ G D+ S L R RIIF+G IN V+ ++QL+ L D + DI +Y
Sbjct: 31 VPTVIEQSGRGERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDIQIY 90
Query: 142 LNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201
+N PGGS+ + +AIYD M I P V T+CFGVAAS A +L+GG KG R A+PN+RIM++
Sbjct: 91 INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 150
Query: 202 QPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
QP G+ G +++ Q E + + S L HT
Sbjct: 151 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHT 185
>sp|A8F754|CLPP_THELT ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=clpP PE=3 SV=1
Length = 199
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 90/135 (66%), Gaps = 4/135 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RI+F+G I+ VA ++QL+ L D D DI +
Sbjct: 7 LIPTVIESTGRYERAYDIYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQL 66
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IK V T+C G AAS AA++LA G KG R+A+PNARIML
Sbjct: 67 YINSPGGSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIML 126
Query: 201 NQPQSGSGGHVEDVK 215
+QP G+ G V+DV+
Sbjct: 127 HQPLGGAEGPVKDVE 141
>sp|Q5KVD9|CLPP_GEOKA ATP-dependent Clp protease proteolytic subunit OS=Geobacillus
kaustophilus (strain HTA426) GN=clpP PE=3 SV=1
Length = 196
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G PI+ VA +SQL+ LA D D DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ IM++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIE 137
>sp|A6TM61|CLPP_ALKMQ ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus
metalliredigens (strain QYMF) GN=clpP PE=3 SV=1
Length = 194
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 87/140 (62%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+G IN + A ++QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIFSRLLKERIIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP V T+C G+AAS A +LA G KG R+A+PNA +M++QP G+ G ED++
Sbjct: 79 DTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRGQAEDIRI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
V R L+ T
Sbjct: 139 HAERIVKLRDTLNKILVERT 158
>sp|B8FA62|CLPP_DESAA ATP-dependent Clp protease proteolytic subunit OS=Desulfatibacillum
alkenivorans (strain AK-01) GN=clpP PE=3 SV=1
Length = 201
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G +N +VA I+QL+ L + D + DI Y+N PGGS+ + +AIY
Sbjct: 19 DIYSRLLKDRIIFLGTEVNDVVANSIIAQLLFLESDDPEKDINFYINSPGGSVTAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M++IKP++ TVC G AAS A++LA G G RY++PNARI+++QP G G D+
Sbjct: 79 DTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARILIHQPMGGFQGQASDIAI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + + L HT
Sbjct: 139 QAQEILRMKEALNEILASHT 158
>sp|Q7V9L6|CLPP3_PROMA ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=clpP3 PE=3
SV=1
Length = 216
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P ++P V+ G D+ S L R RIIF+G +N +A ++Q++ L D + DI
Sbjct: 23 PGVLPTVIEQSGRGERAFDIYSRLLRERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDI 82
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P + T+C+G+AAS A +LAGG KG R A+PN+RI
Sbjct: 83 QLYINSPGGSVTAGLAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRI 142
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G +++ Q E + + + L HT
Sbjct: 143 MIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHT 180
>sp|Q46ID4|CLPP3_PROMT ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus
marinus (strain NATL2A) GN=clpP3 PE=3 SV=1
Length = 194
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G +N VA ++Q++ L D + DI +
Sbjct: 1 MLPTVIEQSGQGDRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQL 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PN+RIM+
Sbjct: 61 YVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G +++ Q E + + S L HT
Sbjct: 121 HQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHT 156
>sp|Q7V992|CLPP1_PROMM ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus
marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1
Length = 224
Score = 127 bits (320), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 82 NPPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDAD 137
+P ++P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + D
Sbjct: 22 SPGILPTVVEQSGRGERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKD 81
Query: 138 ILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197
I +Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L GG KG R A+PNAR
Sbjct: 82 IQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNAR 141
Query: 198 IMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
IM++QP G+ G D++ Q E + + L HT
Sbjct: 142 IMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHT 180
>sp|A4ISQ2|CLPP_GEOTN ATP-dependent Clp protease proteolytic subunit OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1
Length = 196
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 83/119 (69%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI+ VA +SQL+ LA D + DI +Y+N PGGSI + LAIY
Sbjct: 19 DIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS A +LA G KG R+A+PN+ +M++QP G+ G +++
Sbjct: 79 DTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIE 137
>sp|B2A158|CLPP_NATTJ ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=clpP PE=3 SV=1
Length = 197
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 89/140 (63%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIFIG IN +A I+Q++ L + D D DI +Y+N PGG +++ LAIY
Sbjct: 19 DIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPGGHVHAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +I+ V T+C G+AAS A++LA G +G R+ +PN+RIML+QP G+ G DV+
Sbjct: 79 DTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEI 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
E + ++ L HT
Sbjct: 139 HAREIMKTKERLNQILAHHT 158
>sp|Q2LTK5|CLPP_SYNAS ATP-dependent Clp protease proteolytic subunit OS=Syntrophus
aciditrophicus (strain SB) GN=clpP PE=3 SV=1
Length = 194
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 5/158 (3%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L ++RIIF+G PI+ VA I+QL+ L + D D +I
Sbjct: 3 LIPMVVQQDGRGERAYDIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFF 62
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
YLN PGG I S +AIYD M +IKP V TVC G AAS A++LA GE+G R A+P++RI++
Sbjct: 63 YLNTPGGHISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILI 122
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLN 238
+QP G G D+ Q E ++ LS +L N
Sbjct: 123 HQPLGGFQGQATDIDIQARE-ILRLKDELSLILADLTN 159
>sp|A4SDA4|CLPP_PROVI ATP-dependent Clp protease proteolytic subunit OS=Prosthecochloris
vibrioformis (strain DSM 265) GN=clpP PE=3 SV=1
Length = 225
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 7/182 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHASKLYSGAIEEGIQNSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D D DI +Y+N PGGS+ + L IYD M +I+P V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPDRDIFIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTL 237
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R + + HT
Sbjct: 125 GAFLLASGAKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEIMAKHTG 184
Query: 238 ND 239
D
Sbjct: 185 KD 186
>sp|A8MIS8|CLPP_ALKOO ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus
oremlandii (strain OhILAs) GN=clpP PE=3 SV=1
Length = 195
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 81/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L + RIIF+ +N A ++QL+ L + D D DI +Y+N PGGSI + +AIY
Sbjct: 19 DIYSRLLKERIIFLSDEVNDATASLVVAQLLFLESEDPDKDIQLYINSPGGSITAGMAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M++IKP V T+C G+AAS A +L G+KG R+A+PNA IM++QP G+ G ED++
Sbjct: 79 DTMNYIKPDVSTICIGMAASMGAFLLTAGQKGKRFALPNAEIMIHQPLGGTRGQAEDIR 137
>sp|Q0AWF0|CLPP_SYNWW ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas
wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3
SV=1
Length = 200
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 82/119 (68%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G I+ VA I+QL+ L D D DI +Y+N PGGSI + +AIY
Sbjct: 20 DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIY 79
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D + +I+P V T+C G+AAS A +LA G+KG RYA+PNA IM++QP G+ G D++
Sbjct: 80 DTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIE 138
>sp|Q7VXI7|CLPP_BORPE ATP-dependent Clp protease proteolytic subunit OS=Bordetella
pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
GN=clpP PE=3 SV=1
Length = 217
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 85/130 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>sp|Q7W8X2|CLPP_BORPA ATP-dependent Clp protease proteolytic subunit OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=clpP PE=3 SV=1
Length = 217
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 85/130 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>sp|Q7WK83|CLPP_BORBR ATP-dependent Clp protease proteolytic subunit OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=clpP PE=3 SV=1
Length = 217
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 85/130 (65%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IKP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>sp|Q1IWD9|CLPP_DEIGD ATP-dependent Clp protease proteolytic subunit OS=Deinococcus
geothermalis (strain DSM 11300) GN=clpP PE=3 SV=1
Length = 200
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RIIF+G PI S +A ++QL+ L + + D +I MY+NCPGG +Y+ LAIY
Sbjct: 19 DIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPDQEIQMYINCPGGEVYAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M +IK V T+C G+A S +++L G+KG R A+PN+RIM++Q +G G+ D++
Sbjct: 79 DTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRLALPNSRIMIHQGSAGFRGNTPDLEV 138
Query: 217 QVNEAVISRHVSLSFLLLHT 236
Q E + R + HT
Sbjct: 139 QAKEVLRLRDTLIDIYHRHT 158
>sp|A6SY74|CLPP_JANMA ATP-dependent Clp protease proteolytic subunit OS=Janthinobacterium
sp. (strain Marseille) GN=clpP PE=3 SV=1
Length = 210
Score = 127 bits (318), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L + RIIF+ P+N +A ++QL+ L + + D DI +
Sbjct: 19 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKDISL 78
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M +IKP V T+C G+AAS A +LA GEKG R+++PN+RIM+
Sbjct: 79 YINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMI 138
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRH 226
+QP G+ G D++ Q E + R
Sbjct: 139 HQPLGGAQGQASDIEIQAREILYLRE 164
>sp|A9IR54|CLPP_BORPD ATP-dependent Clp protease proteolytic subunit OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=clpP
PE=3 SV=1
Length = 217
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L R R+IF+ P+N A ++QL+ L + + D DI +Y+N PGGS+Y+ +AIY
Sbjct: 40 DIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENPDKDISLYINSPGGSVYAGMAIY 99
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKR 216
D M ++KP V T+C G+AAS A +LA G+KG R+ +PN+RIM++QP G+ G D++
Sbjct: 100 DTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQI 159
Query: 217 QVNEAVISRH 226
Q E + R
Sbjct: 160 QAREILDLRE 169
>sp|Q31BD5|CLPP1_PROM9 ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus
marinus (strain MIT 9312) GN=clpP1 PE=3 SV=1
Length = 195
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 85 LMPAVMTPGGP----LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G+ + S A R ++QL+ L D D DI M
Sbjct: 1 MIPLVLEESGGSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYM 60
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y L I+D M +KP + TVC G+AAS A +LA G KG R ++ ++RIM+
Sbjct: 61 YINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMI 120
Query: 201 NQPQSGSGGHVEDVKRQVNE 220
+QP G+ G D++ Q +E
Sbjct: 121 HQPLGGARGQASDIRIQADE 140
>sp|Q3B0U1|CLPP2_SYNS9 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain CC9902) GN=clpP2 PE=3 SV=1
Length = 207
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 83 PPLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADI 138
P +P V+ G D+ S L R RIIF+G ++ VA ++Q++ L D + DI
Sbjct: 6 PGPLPTVVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDI 65
Query: 139 LMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARI 198
+Y+N PGGS+ + LAIYD M + P V T+C+G+AAS A +L+GG KG R A+PNARI
Sbjct: 66 QIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARI 125
Query: 199 MLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
M++QP G+ G D++ Q E + + L HT
Sbjct: 126 MIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHT 163
>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3
SV=1
Length = 195
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIK 137
>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=clpP PE=3 SV=1
Length = 195
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G+ IN A I+QL+ L D D DI +Y+N PGGSI + AIY
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPGGSITAGFAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIK 137
>sp|O67357|CLPP_AQUAE ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus
(strain VF5) GN=clpP PE=3 SV=1
Length = 201
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVM--TPGGP--LDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ TP G D+ S L ++RI+ +G PI+ VA ++QL+ L + D D DI +
Sbjct: 10 LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYL 69
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + LAIYD M +IKP V T+C G AAS AI+LA G G RYA+P++RIM+
Sbjct: 70 YINSPGGSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYALPHSRIMI 129
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G G D+ E + + + L HT
Sbjct: 130 HQPLGGIQGQATDIIIHAEEIKRIKEMLIDILAKHT 165
>sp|Q5N1P6|CLPP3_SYNP6 ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP3 PE=3 SV=1
Length = 240
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 45 SSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSS 100
SS L I +R L +D + + + I+G ++P V+ G D+ S
Sbjct: 3 SSHASLPIHSRRLAAGLDSR---WQQPQIQAIAGSQ---AIVPTVVEQSGRGERAFDIYS 56
Query: 101 VLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 160
L R RI+F+G ++ VA ++QL+ L D + DI +Y+N PGGS+ + +AIYD M
Sbjct: 57 RLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQ 116
Query: 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
+ P V T+CFG+AAS A +L+GG +G R A+P+ARIM++QP G+ G D++ Q E
Sbjct: 117 QVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQARE 176
Query: 221 AVISRHVSLSFLLLHT 236
+ + L HT
Sbjct: 177 ILYHKSTLNDLLAQHT 192
>sp|O34125|CLPP2_SYNE7 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1
Length = 240
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 45 SSSGGLSIRNRGLPLKIDEKDFCSTEHSYKIISGKNDNPPLMPAVMTPGG----PLDLSS 100
SS L I +R L +D + + + I+G ++P V+ G D+ S
Sbjct: 3 SSHASLPIHSRRLAAGLDSR---WQQPQIQAIAGSQ---AIVPTVVEQSGRGERAFDIYS 56
Query: 101 VLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 160
L R RI+F+G ++ VA ++QL+ L D + DI +Y+N PGGS+ + +AIYD M
Sbjct: 57 RLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQ 116
Query: 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNE 220
+ P V T+CFG+AAS A +L+GG +G R A+P+ARIM++QP G+ G D++ Q E
Sbjct: 117 QVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQARE 176
Query: 221 AVISRHVSLSFLLLHT 236
+ + L HT
Sbjct: 177 ILYHKSTLNDLLAQHT 192
>sp|Q8YQX8|CLPP2_NOSS1 ATP-dependent Clp protease proteolytic subunit 2 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpP2 PE=3 SV=1
Length = 232
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
++P V+ G D+ S L R RIIF+G PI+ VA ++QL+ L D + DI +
Sbjct: 29 IVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQL 88
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+Y+ +AIYD + I+P V T+CFG+AAS A +L G KG R ++P++RIM+
Sbjct: 89 YINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMI 148
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHT 236
+QP G+ G D++ Q E + + L HT
Sbjct: 149 HQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHT 184
>sp|A1BI15|CLPP_CHLPD ATP-dependent Clp protease proteolytic subunit OS=Chlorobium
phaeobacteroides (strain DSM 266) GN=clpP PE=3 SV=1
Length = 227
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 7/182 (3%)
Query: 65 DFCSTEHSYKIISGKNDNP---PLMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSM 117
+F H+ K+ SG + L+P V+ G D+ S L R RIIF+G I+
Sbjct: 5 NFGFEHHARKLYSGAIEQGITGSLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEH 64
Query: 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177
VA ++QL+ L + D + DI +Y+N PGGS+ + L IYD M +I+P V TVC G+AAS
Sbjct: 65 VAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASM 124
Query: 178 AAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTL 237
A +LA G KG R ++P++RIM++QP G+ G D+ Q E R + L HT
Sbjct: 125 GAFLLASGTKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTG 184
Query: 238 ND 239
D
Sbjct: 185 KD 186
>sp|Q3JRC9|CLPP_BURP1 ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
pseudomallei (strain 1710b) GN=clpP PE=3 SV=1
Length = 207
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 75
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 135
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + R L HT D
Sbjct: 136 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQD 174
>sp|Q62JK7|CLPP_BURMA ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
mallei (strain ATCC 23344) GN=clpP PE=3 SV=1
Length = 207
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 85 LMPAVMTPGG----PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILM 140
L+P V+ G D+ S L + RI+F+ +N A ++QL+ L + + D DI +
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 75
Query: 141 YLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200
Y+N PGGS+ + +AIYD M ++KP V T+C G+AAS A +LA G KG RYA+PNAR+M+
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 135
Query: 201 NQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239
+QP G+ G D++ Q E + R L HT D
Sbjct: 136 HQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQD 174
>sp|Q8RC25|CLPP_THETN ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=clpP PE=3 SV=2
Length = 195
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%)
Query: 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIY 156
D+ S L ++RI+F+G IN A I+Q++ L D D DI +Y+N PGGSI + LAIY
Sbjct: 19 DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPGGSITAGLAIY 78
Query: 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVK 215
D M +IKP V T+C G+AAS AA +LA G KG R+A+PN+ IM++QP G G D+K
Sbjct: 79 DTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQGQATDIK 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,792,666
Number of Sequences: 539616
Number of extensions: 3483310
Number of successful extensions: 8712
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7924
Number of HSP's gapped (non-prelim): 772
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)