Query 026362
Match_columns 240
No_of_seqs 190 out of 1407
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:04:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 2.1E-53 4.5E-58 379.4 17.9 146 94-239 81-226 (275)
2 COG0740 ClpP Protease subunit 100.0 7.1E-51 1.5E-55 353.9 16.6 156 85-240 3-162 (200)
3 PRK14513 ATP-dependent Clp pro 100.0 1.5E-48 3.2E-53 340.0 18.6 145 95-239 17-161 (201)
4 PRK14514 ATP-dependent Clp pro 100.0 4.2E-48 9.1E-53 341.5 18.1 145 95-239 44-188 (221)
5 PRK12551 ATP-dependent Clp pro 100.0 4.8E-47 1E-51 329.3 17.7 145 95-239 15-159 (196)
6 CHL00028 clpP ATP-dependent Cl 100.0 6.8E-47 1.5E-51 329.1 18.5 145 95-239 20-165 (200)
7 PRK12552 ATP-dependent Clp pro 100.0 3.6E-47 7.9E-52 335.7 16.7 145 95-239 20-183 (222)
8 TIGR00493 clpP ATP-dependent C 100.0 3.7E-43 8E-48 302.9 17.7 145 95-239 16-160 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 1.2E-41 2.5E-46 295.3 18.2 146 94-239 12-157 (197)
10 PRK00277 clpP ATP-dependent Cl 100.0 3.2E-41 6.8E-46 292.6 18.7 145 95-239 21-165 (200)
11 PRK12553 ATP-dependent Clp pro 100.0 2.9E-40 6.4E-45 288.0 17.4 145 95-239 25-171 (207)
12 PF00574 CLP_protease: Clp pro 100.0 3.3E-40 7.1E-45 278.9 13.5 145 95-239 6-150 (182)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 1.2E-38 2.7E-43 269.0 15.6 143 97-239 1-143 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 1.3E-36 2.9E-41 255.3 16.8 134 106-239 1-134 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 99.9 4.1E-26 8.8E-31 189.3 15.4 128 107-239 2-132 (160)
16 cd07015 Clp_protease_NfeD Nodu 99.9 6.9E-22 1.5E-26 168.8 15.0 124 107-239 3-134 (172)
17 cd00394 Clp_protease_like Case 99.9 7.9E-22 1.7E-26 162.8 14.3 131 107-239 1-133 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.8 6.4E-19 1.4E-23 150.7 15.2 129 107-239 3-134 (187)
19 cd07021 Clp_protease_NfeD_like 99.7 8.4E-17 1.8E-21 137.9 14.3 125 107-239 3-127 (178)
20 cd07023 S49_Sppa_N_C Signal pe 99.3 1.8E-11 3.9E-16 105.9 12.8 131 107-239 4-170 (208)
21 TIGR00706 SppA_dom signal pept 99.2 2.5E-10 5.5E-15 99.1 14.2 89 107-198 4-94 (207)
22 COG0616 SppA Periplasmic serin 99.2 8.3E-11 1.8E-15 108.9 8.9 76 120-197 83-160 (317)
23 cd07014 S49_SppA Signal peptid 99.2 5.2E-10 1.1E-14 94.5 12.6 113 118-239 23-138 (177)
24 TIGR00705 SppA_67K signal pept 99.1 1.3E-09 2.9E-14 108.3 14.6 131 107-239 312-481 (584)
25 cd07022 S49_Sppa_36K_type Sign 99.1 2.8E-09 6E-14 93.0 14.2 121 117-239 25-177 (214)
26 cd07019 S49_SppA_1 Signal pept 99.0 2E-08 4.4E-13 87.4 14.4 118 120-239 24-173 (211)
27 PF01972 SDH_sah: Serine dehyd 98.9 3.5E-08 7.6E-13 90.4 13.1 91 111-206 69-159 (285)
28 PRK11778 putative inner membra 98.7 7.4E-08 1.6E-12 90.2 9.1 92 107-200 94-189 (330)
29 cd07018 S49_SppA_67K_type Sign 98.5 1.3E-06 2.8E-11 76.7 12.2 88 113-203 25-115 (222)
30 PRK10949 protease 4; Provision 98.5 4.5E-07 9.8E-12 91.1 8.6 89 107-197 330-428 (618)
31 COG1030 NfeD Membrane-bound se 98.3 3.2E-06 6.9E-11 81.7 10.2 97 107-206 30-129 (436)
32 COG3904 Predicted periplasmic 97.7 0.00017 3.6E-09 64.4 8.6 94 108-206 79-173 (245)
33 cd06558 crotonase-like Crotona 97.3 0.0044 9.5E-08 51.9 11.4 93 113-207 22-135 (195)
34 TIGR00705 SppA_67K signal pept 96.6 0.034 7.3E-07 55.9 12.8 83 117-202 76-162 (584)
35 TIGR00513 accA acetyl-CoA carb 96.5 0.02 4.3E-07 53.8 9.7 99 104-206 122-230 (316)
36 PRK05724 acetyl-CoA carboxylas 96.5 0.025 5.3E-07 53.3 10.1 99 104-206 122-230 (319)
37 CHL00198 accA acetyl-CoA carbo 96.4 0.019 4.1E-07 54.1 9.2 99 104-206 125-233 (322)
38 PRK06688 enoyl-CoA hydratase; 96.4 0.072 1.6E-06 47.3 12.3 89 114-206 29-137 (259)
39 PLN03229 acetyl-coenzyme A car 96.2 0.019 4.2E-07 59.1 8.7 94 109-206 218-321 (762)
40 PRK07511 enoyl-CoA hydratase; 96.2 0.062 1.3E-06 47.9 11.0 88 114-206 27-139 (260)
41 TIGR03134 malonate_gamma malon 96.2 0.059 1.3E-06 48.7 10.8 110 114-225 45-171 (238)
42 PRK08258 enoyl-CoA hydratase; 96.2 0.051 1.1E-06 49.1 10.3 89 114-207 41-155 (277)
43 PRK06072 enoyl-CoA hydratase; 96.1 0.054 1.2E-06 48.2 10.2 88 114-206 24-130 (248)
44 PRK12319 acetyl-CoA carboxylas 96.0 0.065 1.4E-06 48.9 10.0 99 104-206 69-177 (256)
45 PRK06210 enoyl-CoA hydratase; 96.0 0.055 1.2E-06 48.6 9.5 88 114-206 30-149 (272)
46 PRK06495 enoyl-CoA hydratase; 96.0 0.11 2.4E-06 46.3 11.4 91 114-209 27-141 (257)
47 PRK05869 enoyl-CoA hydratase; 95.9 0.14 3E-06 45.1 11.6 89 114-206 31-140 (222)
48 PF00378 ECH: Enoyl-CoA hydrat 95.9 0.07 1.5E-06 46.9 9.7 89 114-206 22-131 (245)
49 PRK10949 protease 4; Provision 95.9 0.12 2.6E-06 52.5 12.4 85 116-203 94-182 (618)
50 PRK06023 enoyl-CoA hydratase; 95.8 0.078 1.7E-06 47.2 9.8 88 114-206 30-138 (251)
51 PRK09674 enoyl-CoA hydratase-i 95.8 0.083 1.8E-06 47.1 9.8 88 114-206 26-133 (255)
52 PRK03580 carnitinyl-CoA dehydr 95.8 0.083 1.8E-06 47.3 9.8 86 114-204 26-133 (261)
53 PRK05981 enoyl-CoA hydratase; 95.8 0.077 1.7E-06 47.5 9.6 89 114-206 28-144 (266)
54 PRK07509 enoyl-CoA hydratase; 95.8 0.085 1.8E-06 47.0 9.8 88 114-206 27-143 (262)
55 PRK06143 enoyl-CoA hydratase; 95.8 0.095 2E-06 46.9 10.1 88 114-206 31-141 (256)
56 PLN03230 acetyl-coenzyme A car 95.8 0.052 1.1E-06 52.9 8.9 91 112-206 200-300 (431)
57 TIGR03210 badI 2-ketocyclohexa 95.8 0.094 2E-06 46.9 10.0 88 114-206 26-135 (256)
58 PRK07468 enoyl-CoA hydratase; 95.7 0.095 2.1E-06 46.9 9.9 88 114-206 29-141 (262)
59 TIGR03189 dienoyl_CoA_hyt cycl 95.7 0.098 2.1E-06 46.8 9.9 88 114-206 24-130 (251)
60 PRK06190 enoyl-CoA hydratase; 95.7 0.12 2.6E-06 46.5 10.4 86 114-204 28-133 (258)
61 PRK11423 methylmalonyl-CoA dec 95.7 0.24 5.1E-06 44.5 12.3 88 114-206 28-137 (261)
62 PRK05864 enoyl-CoA hydratase; 95.7 0.11 2.3E-06 47.0 10.1 83 114-201 34-145 (276)
63 PLN02600 enoyl-CoA hydratase 95.6 0.12 2.5E-06 46.2 10.0 88 114-206 19-129 (251)
64 PRK05809 3-hydroxybutyryl-CoA 95.5 0.12 2.6E-06 46.1 9.8 88 114-206 28-138 (260)
65 PRK08260 enoyl-CoA hydratase; 95.5 0.1 2.2E-06 47.6 9.6 50 155-206 105-154 (296)
66 PRK07854 enoyl-CoA hydratase; 95.5 0.11 2.5E-06 46.0 9.5 85 114-204 24-125 (243)
67 PRK08138 enoyl-CoA hydratase; 95.5 0.14 3.1E-06 45.8 10.2 86 114-204 32-137 (261)
68 PLN02664 enoyl-CoA hydratase/d 95.5 0.11 2.4E-06 46.9 9.4 88 114-206 32-152 (275)
69 PRK09076 enoyl-CoA hydratase; 95.4 0.15 3.2E-06 45.6 9.9 88 114-206 26-136 (258)
70 TIGR02280 PaaB1 phenylacetate 95.4 0.15 3.2E-06 45.5 9.8 86 114-204 23-132 (256)
71 TIGR01929 menB naphthoate synt 95.3 0.15 3.2E-06 45.7 9.7 88 114-206 27-138 (259)
72 PLN02921 naphthoate synthase 95.3 0.17 3.6E-06 47.5 10.4 88 114-206 91-202 (327)
73 PRK07110 polyketide biosynthes 95.3 0.1 2.2E-06 46.4 8.6 88 114-206 29-135 (249)
74 PRK08150 enoyl-CoA hydratase; 95.2 0.2 4.3E-06 44.8 10.2 86 114-206 26-133 (255)
75 PLN02851 3-hydroxyisobutyryl-C 95.2 0.18 3.9E-06 48.9 10.4 96 106-206 53-179 (407)
76 PRK05995 enoyl-CoA hydratase; 95.1 0.2 4.2E-06 44.8 9.9 88 114-206 28-140 (262)
77 PRK05980 enoyl-CoA hydratase; 95.1 0.18 3.9E-06 44.9 9.6 86 114-204 27-139 (260)
78 PRK05870 enoyl-CoA hydratase; 95.1 0.15 3.3E-06 45.3 9.0 86 114-204 27-134 (249)
79 PRK06142 enoyl-CoA hydratase; 95.1 0.14 3.1E-06 46.0 8.9 88 114-206 30-150 (272)
80 PRK07260 enoyl-CoA hydratase; 95.1 0.21 4.5E-06 44.5 9.8 84 114-202 26-135 (255)
81 PLN02888 enoyl-CoA hydratase 95.1 0.23 5E-06 44.7 10.2 86 114-204 34-138 (265)
82 PLN03214 probable enoyl-CoA hy 95.1 0.097 2.1E-06 47.6 7.8 89 114-206 35-148 (278)
83 PRK07327 enoyl-CoA hydratase; 95.1 0.22 4.7E-06 44.8 10.0 86 114-204 36-145 (268)
84 PRK07938 enoyl-CoA hydratase; 95.0 0.26 5.5E-06 44.0 10.2 89 114-207 25-136 (249)
85 PRK06563 enoyl-CoA hydratase; 95.0 0.26 5.7E-06 43.8 10.2 88 114-206 23-133 (255)
86 PRK09245 enoyl-CoA hydratase; 94.9 0.18 3.8E-06 45.2 9.1 50 155-206 95-144 (266)
87 PRK08140 enoyl-CoA hydratase; 94.9 0.28 6.1E-06 43.8 10.2 85 114-204 28-138 (262)
88 PRK07657 enoyl-CoA hydratase; 94.7 0.29 6.3E-06 43.7 9.9 88 114-206 28-138 (260)
89 PRK07112 polyketide biosynthes 94.7 0.35 7.7E-06 43.1 10.4 87 114-207 28-138 (255)
90 PRK07396 dihydroxynaphthoic ac 94.7 0.3 6.4E-06 44.1 10.0 88 114-206 37-148 (273)
91 PRK05674 gamma-carboxygeranoyl 94.7 0.29 6.2E-06 44.0 9.8 88 114-206 30-142 (265)
92 PRK06127 enoyl-CoA hydratase; 94.7 0.32 7E-06 43.7 10.1 88 114-206 35-147 (269)
93 PRK07658 enoyl-CoA hydratase; 94.7 0.3 6.4E-06 43.4 9.7 86 114-204 25-133 (257)
94 PRK09120 p-hydroxycinnamoyl Co 94.6 0.34 7.3E-06 43.9 10.1 86 114-204 32-143 (275)
95 PLN02988 3-hydroxyisobutyryl-C 94.6 0.88 1.9E-05 43.6 13.3 88 114-206 33-146 (381)
96 PRK05617 3-hydroxyisobutyryl-C 94.6 0.28 6E-06 46.1 9.8 86 114-204 27-139 (342)
97 PRK08139 enoyl-CoA hydratase; 94.6 0.41 8.9E-06 43.1 10.5 89 114-207 35-146 (266)
98 PRK08321 naphthoate synthase; 94.6 0.41 8.8E-06 44.1 10.6 89 114-204 49-175 (302)
99 PRK08272 enoyl-CoA hydratase; 94.5 0.32 6.9E-06 44.6 9.8 46 155-202 119-164 (302)
100 PRK08290 enoyl-CoA hydratase; 94.5 0.19 4E-06 46.0 8.3 51 155-207 110-160 (288)
101 PRK06494 enoyl-CoA hydratase; 94.5 0.43 9.2E-06 42.7 10.3 88 114-206 28-135 (259)
102 PLN02267 enoyl-CoA hydratase/i 94.4 0.52 1.1E-05 41.9 10.5 91 114-206 23-136 (239)
103 PRK06144 enoyl-CoA hydratase; 94.3 0.31 6.6E-06 43.7 9.0 84 114-202 32-139 (262)
104 PRK07827 enoyl-CoA hydratase; 94.1 0.45 9.7E-06 42.5 9.7 86 114-204 30-140 (260)
105 PRK08788 enoyl-CoA hydratase; 94.1 0.71 1.5E-05 42.5 11.1 91 114-206 40-162 (287)
106 PRK12478 enoyl-CoA hydratase; 94.0 0.26 5.7E-06 45.3 8.1 48 155-204 104-151 (298)
107 PLN02157 3-hydroxyisobutyryl-C 93.9 0.47 1E-05 45.9 10.0 88 114-206 61-174 (401)
108 TIGR03200 dearomat_oah 6-oxocy 93.9 0.47 1E-05 45.5 9.8 88 114-206 52-165 (360)
109 TIGR01117 mmdA methylmalonyl-C 93.8 0.46 9.9E-06 47.3 10.0 92 111-206 328-433 (512)
110 PRK07659 enoyl-CoA hydratase; 93.8 0.54 1.2E-05 42.0 9.6 85 114-204 30-137 (260)
111 PRK05862 enoyl-CoA hydratase; 93.8 0.45 9.7E-06 42.4 9.0 86 114-204 28-133 (257)
112 COG1024 CaiD Enoyl-CoA hydrata 93.6 0.38 8.2E-06 42.8 8.3 91 113-206 28-139 (257)
113 PF01343 Peptidase_S49: Peptid 93.6 0.58 1.3E-05 38.8 8.8 39 160-200 3-41 (154)
114 PRK08252 enoyl-CoA hydratase; 93.5 0.69 1.5E-05 41.2 9.8 86 114-204 27-130 (254)
115 PLN02874 3-hydroxyisobutyryl-C 93.2 0.91 2E-05 43.3 10.6 95 107-206 23-146 (379)
116 PRK06213 enoyl-CoA hydratase; 93.2 0.87 1.9E-05 39.9 9.7 87 114-206 26-133 (229)
117 KOG1680 Enoyl-CoA hydratase [L 93.1 0.54 1.2E-05 43.8 8.5 91 114-206 61-168 (290)
118 PRK07799 enoyl-CoA hydratase; 93.0 0.91 2E-05 40.6 9.7 89 114-206 29-141 (263)
119 PF01039 Carboxyl_trans: Carbo 92.5 0.31 6.7E-06 48.0 6.5 94 111-206 307-412 (493)
120 PRK08259 enoyl-CoA hydratase; 92.2 0.89 1.9E-05 40.6 8.6 84 114-202 27-130 (254)
121 TIGR03222 benzo_boxC benzoyl-C 91.2 1.2 2.6E-05 44.8 9.1 83 114-200 45-156 (546)
122 TIGR02437 FadB fatty oxidation 91.1 1.5 3.3E-05 45.2 10.0 88 114-206 31-143 (714)
123 COG0825 AccA Acetyl-CoA carbox 91.0 0.61 1.3E-05 43.8 6.3 83 135-219 150-245 (317)
124 TIGR02440 FadJ fatty oxidation 90.9 1.6 3.4E-05 44.9 9.8 86 114-204 26-137 (699)
125 PRK08184 benzoyl-CoA-dihydrodi 90.9 1.1 2.4E-05 45.1 8.5 83 114-200 49-160 (550)
126 PRK11730 fadB multifunctional 90.4 1.4 3.1E-05 45.4 9.0 88 114-206 31-143 (715)
127 PRK11154 fadJ multifunctional 89.8 2.9 6.2E-05 43.1 10.6 88 114-206 31-144 (708)
128 PLN02820 3-methylcrotonyl-CoA 89.1 10 0.00022 38.5 13.7 92 112-205 380-483 (569)
129 TIGR03133 malonate_beta malona 88.7 3.3 7.3E-05 38.3 9.2 93 109-204 70-177 (274)
130 PRK07189 malonate decarboxylas 87.6 3.1 6.7E-05 39.0 8.3 93 109-204 79-186 (301)
131 TIGR02441 fa_ox_alpha_mit fatt 85.7 4 8.6E-05 42.4 8.8 86 114-204 38-149 (737)
132 TIGR00515 accD acetyl-CoA carb 85.1 5.9 0.00013 36.8 8.8 92 109-204 131-233 (285)
133 TIGR03222 benzo_boxC benzoyl-C 85.1 15 0.00032 37.1 12.2 90 114-207 295-416 (546)
134 PRK05654 acetyl-CoA carboxylas 84.5 7.6 0.00017 36.1 9.3 92 109-204 132-234 (292)
135 PF06833 MdcE: Malonate decarb 80.1 13 0.00028 33.8 8.8 69 131-202 60-141 (234)
136 COG4799 Acetyl-CoA carboxylase 79.0 5.3 0.00011 40.3 6.4 92 111-204 337-440 (526)
137 PRK08184 benzoyl-CoA-dihydrodi 75.3 19 0.00041 36.4 9.2 89 114-206 299-419 (550)
138 PLN02820 3-methylcrotonyl-CoA 71.9 24 0.00053 35.9 9.1 90 110-203 141-244 (569)
139 PF08496 Peptidase_S49_N: Pept 64.0 11 0.00024 32.0 4.2 44 108-151 103-147 (155)
140 KOG1682 Enoyl-CoA isomerase [L 63.0 37 0.00079 31.0 7.4 45 155-201 117-161 (287)
141 cd06567 Peptidase_S41 C-termin 60.5 53 0.0012 28.1 7.9 68 116-185 72-166 (224)
142 cd07560 Peptidase_S41_CPP C-te 60.0 54 0.0012 28.6 7.9 88 96-185 40-153 (211)
143 TIGR00225 prc C-terminal pepti 58.0 36 0.00077 31.6 6.8 78 107-185 153-256 (334)
144 CHL00174 accD acetyl-CoA carbo 55.6 70 0.0015 30.1 8.3 92 109-204 144-247 (296)
145 TIGR01117 mmdA methylmalonyl-C 55.2 61 0.0013 32.4 8.3 92 109-204 93-194 (512)
146 PRK11186 carboxy-terminal prot 53.1 57 0.0012 33.9 7.9 79 105-184 353-458 (667)
147 PF01039 Carboxyl_trans: Carbo 51.1 41 0.00089 33.3 6.3 92 109-204 68-171 (493)
148 PLN00049 carboxyl-terminal pro 48.4 63 0.0014 30.9 7.0 78 105-183 194-299 (389)
149 PF14566 PTPlike_phytase: Inos 46.5 53 0.0011 27.1 5.4 55 105-160 91-149 (149)
150 KOG1681 Enoyl-CoA isomerase [L 44.5 5.9 0.00013 36.5 -0.6 52 154-207 117-168 (292)
151 PF03808 Glyco_tran_WecB: Glyc 43.8 1E+02 0.0022 25.9 6.9 72 96-174 34-112 (172)
152 COG0074 SucD Succinyl-CoA synt 43.3 68 0.0015 30.2 6.1 81 107-200 175-255 (293)
153 TIGR00161 conserved hypothetic 42.6 1.5E+02 0.0032 26.5 8.0 132 95-234 68-226 (238)
154 cd07561 Peptidase_S41_CPP_like 39.8 1.2E+02 0.0026 27.4 7.0 79 105-184 64-181 (256)
155 smart00245 TSPc tail specific 36.9 1.6E+02 0.0035 24.9 7.1 71 114-185 38-134 (192)
156 PF03572 Peptidase_S41: Peptid 36.7 1.1E+02 0.0023 24.5 5.7 67 118-185 16-112 (169)
157 COG0757 AroQ 3-dehydroquinate 36.5 72 0.0016 27.2 4.7 29 140-169 70-98 (146)
158 cd07562 Peptidase_S41_TRI Tric 34.9 2E+02 0.0043 25.7 7.6 79 101-184 83-184 (266)
159 KOG1684 Enoyl-CoA hydratase [L 34.1 1.5E+02 0.0032 29.1 7.0 89 105-196 48-166 (401)
160 cd06533 Glyco_transf_WecG_TagA 33.0 2.3E+02 0.005 23.7 7.3 67 105-177 47-113 (171)
161 TIGR00661 MJ1255 conserved hyp 32.8 70 0.0015 29.0 4.5 35 138-173 2-37 (321)
162 COG0793 Prc Periplasmic protea 31.1 1.4E+02 0.0031 28.9 6.5 77 107-184 205-308 (406)
163 cd01834 SGNH_hydrolase_like_2 29.8 1.4E+02 0.0031 23.8 5.4 66 105-173 2-71 (191)
164 KOG1679 Enoyl-CoA hydratase [L 29.7 1E+02 0.0023 28.4 4.9 50 151-202 112-161 (291)
165 PRK14500 putative bifunctional 26.2 34 0.00074 32.4 1.2 47 150-197 123-180 (346)
166 PLN00125 Succinyl-CoA ligase [ 25.7 2.5E+02 0.0053 26.3 6.8 64 107-175 180-245 (300)
167 COG0447 MenB Dihydroxynaphthoi 23.6 89 0.0019 28.8 3.3 53 152-206 105-157 (282)
168 TIGR02886 spore_II_AA anti-sig 23.3 1.4E+02 0.003 22.3 3.9 78 107-186 11-92 (106)
169 KOG0540 3-Methylcrotonyl-CoA c 23.0 4.8E+02 0.01 26.5 8.4 85 111-200 362-460 (536)
170 cd01844 SGNH_hydrolase_like_6 21.7 2.5E+02 0.0055 22.8 5.5 63 106-174 1-68 (177)
171 PRK06476 pyrroline-5-carboxyla 20.7 85 0.0018 27.6 2.6 45 114-158 184-235 (258)
172 cd07563 Peptidase_S41_IRBP Int 20.6 5.7E+02 0.012 22.3 7.9 49 136-184 96-178 (250)
173 TIGR00696 wecB_tagA_cpsF bacte 20.5 5.4E+02 0.012 21.9 7.5 75 96-177 34-114 (177)
174 COG1938 Archaeal enzymes of AT 20.1 5.3E+02 0.011 23.7 7.6 133 95-234 68-229 (244)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-53 Score=379.39 Aligned_cols=146 Identities=46% Similarity=0.758 Sum_probs=144.8
Q ss_pred CCCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcce
Q 026362 94 GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 94 ~~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~ 173 (240)
+|+|||++|||+|||||+++||+++++.+++||+||+.+|++++|++|||||||++++|+||||+|++++++|.|+|.|+
T Consensus 81 ~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~G~ 160 (275)
T KOG0840|consen 81 RPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGL 160 (275)
T ss_pred CcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeehhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
|||||+|||++|+||+|+++||+++|||||.+++.|++.||.++|+|+.+.++.+.++|++|||+|
T Consensus 161 Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~ 226 (275)
T KOG0840|consen 161 AASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQP 226 (275)
T ss_pred HHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999997
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=7.1e-51 Score=353.87 Aligned_cols=156 Identities=40% Similarity=0.694 Sum_probs=149.3
Q ss_pred ccceeeCCC--C--CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHh
Q 026362 85 LMPAVMTPG--G--PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS 160 (240)
Q Consensus 85 ~~p~~~~~~--~--~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~ 160 (240)
+.|.++++. + ..|+|++|+++|+||++|+|++++++.+++||++|++++++++|+||||||||+|++|++|||+|+
T Consensus 3 ~~~~~~e~~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~ 82 (200)
T COG0740 3 LVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQ 82 (200)
T ss_pred CCccccCcccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHH
Confidence 456666542 2 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026362 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLNDS 240 (240)
Q Consensus 161 ~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~~ 240 (240)
+++++|+|+|.|+|||||++|+++|++|||+++|||++|||||+++++|+++|++++|+|++++++++.++|+++||++.
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~ 162 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTL 162 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.5e-48 Score=340.03 Aligned_cols=145 Identities=40% Similarity=0.721 Sum_probs=143.4
Q ss_pred CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
|+|+|++||++|||||+++||+++++.++++|++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|+|+|
T Consensus 17 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~A 96 (201)
T PRK14513 17 MYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIA 96 (201)
T ss_pred ccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
||||++|+++|++|||+++|||++|||||+++++|++.|++++++||+++++.+.++|+++||++
T Consensus 97 aS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~ 161 (201)
T PRK14513 97 MSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLP 161 (201)
T ss_pred hhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4.2e-48 Score=341.49 Aligned_cols=145 Identities=37% Similarity=0.651 Sum_probs=143.4
Q ss_pred CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
++|+|++||++|||||+++||+++++.+++||++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|.|+|
T Consensus 44 ~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G~A 123 (221)
T PRK14514 44 QMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGMA 123 (221)
T ss_pred ccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
||||++|+++|++|||+++|||++|||||++++.|++.|++++++|++++++.+.++|+++||++
T Consensus 124 AS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~ 188 (221)
T PRK14514 124 ASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTP 188 (221)
T ss_pred hhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 5
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=4.8e-47 Score=329.27 Aligned_cols=145 Identities=40% Similarity=0.683 Sum_probs=143.2
Q ss_pred CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
++|+|++||++||||++++||++++++++++|++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|+|+|
T Consensus 15 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~A 94 (196)
T PRK12551 15 AFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGLA 94 (196)
T ss_pred ccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
||||++|+++|++|+|+++|||++|||||+++..|++.|+++++++|+++++.+.++|+++||++
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~ 159 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQP 159 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=6.8e-47 Score=329.13 Aligned_cols=145 Identities=38% Similarity=0.644 Sum_probs=143.2
Q ss_pred CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
|.|+|++||++|||||+++||+++++.+++||++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+|
T Consensus 20 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv~~G~A 99 (200)
T CHL00028 20 WVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTICLGLA 99 (200)
T ss_pred cccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEeh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG-SGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g-~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+|||++|+++|++|+|+++|||++|||||+++ ..|++.|+++++++|+++++.+.++|+++||++
T Consensus 100 aS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~ 165 (200)
T CHL00028 100 ASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKP 165 (200)
T ss_pred HHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999998 899999999999999999999999999999987
No 7
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=3.6e-47 Score=335.68 Aligned_cols=145 Identities=38% Similarity=0.626 Sum_probs=141.9
Q ss_pred CCChhhhhccCcEEEEccccChh----------HHHHHHHHHHhhhccCCCCCceEEEeCCCcc---------HhHHHHH
Q 026362 95 PLDLSSVLFRNRIIFIGQPINSM----------VAQRAISQLVTLATIDEDADILMYLNCPGGS---------IYSVLAI 155 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~Id~~----------~a~~~iaqLl~L~~~d~~~~I~l~INSPGGs---------V~aGlaI 155 (240)
+.|+|++||++|||||+++||++ +++.+++||++|+.++++++|+||||||||+ +++|++|
T Consensus 20 ~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaI 99 (222)
T PRK12552 20 PPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAI 99 (222)
T ss_pred CcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHH
Confidence 58999999999999999999999 9999999999999999999999999999988 6788999
Q ss_pred HHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026362 156 YDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLH 235 (240)
Q Consensus 156 yd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~ 235 (240)
||+|++++++|+|+|+|+|||||++|+++|+||+|+++|||++|||||+++++|++.|++++++||+++++.+.++|+++
T Consensus 100 yD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~ 179 (222)
T PRK12552 100 CDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRN 179 (222)
T ss_pred HHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC
Q 026362 236 TLND 239 (240)
Q Consensus 236 TG~~ 239 (240)
||++
T Consensus 180 TG~~ 183 (222)
T PRK12552 180 TGQT 183 (222)
T ss_pred HCCC
Confidence 9987
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=3.7e-43 Score=302.92 Aligned_cols=145 Identities=42% Similarity=0.707 Sum_probs=142.8
Q ss_pred CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
++|+|++|+++|+||++|+||++++++++++|++|+.+++.++|+||||||||++++|++|||+|++++++|+|+|+|+|
T Consensus 16 ~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G~A 95 (191)
T TIGR00493 16 SFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGQA 95 (191)
T ss_pred cccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEEee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+|||++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.++|+++||+|
T Consensus 96 aSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~ 160 (191)
T TIGR00493 96 ASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQS 160 (191)
T ss_pred ccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=295.35 Aligned_cols=146 Identities=29% Similarity=0.446 Sum_probs=142.4
Q ss_pred CCCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcce
Q 026362 94 GPLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 94 ~~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~ 173 (240)
++.+++++|+++|+|||+|+||+++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+
T Consensus 12 ~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~ 91 (197)
T PRK14512 12 GIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGL 91 (197)
T ss_pred CcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 46789999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
|+|||++|+++|++|+|+++|||++|||||++++.|++.|+++++++++++++.+.++|+++||++
T Consensus 92 AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~ 157 (197)
T PRK14512 92 VASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQE 157 (197)
T ss_pred eHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999987
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.2e-41 Score=292.58 Aligned_cols=145 Identities=41% Similarity=0.687 Sum_probs=142.8
Q ss_pred CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
|+|++++|+++|+|||+|+||+++++.++++|++|+.+++.++|+||||||||++++|++|||+|++++.+|+|+|.|.|
T Consensus 21 ~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a 100 (200)
T PRK00277 21 SYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTICIGQA 100 (200)
T ss_pred cccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEEEeEe
Confidence 89999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+|+|++|+++|++++|+++||+++|||||+++.+|++.|+++++++++++++.+.++|+++||++
T Consensus 101 aS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~ 165 (200)
T PRK00277 101 ASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQP 165 (200)
T ss_pred ccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.9e-40 Score=288.05 Aligned_cols=145 Identities=41% Similarity=0.674 Sum_probs=141.7
Q ss_pred CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
+.|++++|+++|+|||+|+||+++++.|+++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|.|
T Consensus 25 ~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 25 ESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred cccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence 68999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQ--SGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~--~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+|||++|+++|++|+|++.|||+||||||+ ++.+|++.|+++++++++++++.+.++|+++||++
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~ 171 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQS 171 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999 56899999999999999999999999999999986
No 12
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=3.3e-40 Score=278.93 Aligned_cols=145 Identities=39% Similarity=0.591 Sum_probs=139.0
Q ss_pred CCChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362 95 PLDLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
|+|+|++|+++|+|||+|+||+++++.++++|++|+.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|.|
T Consensus 6 ~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G~a 85 (182)
T PF00574_consen 6 WYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLGLA 85 (182)
T ss_dssp EEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEEEE
T ss_pred EEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 89999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+|||++|+++|++++|++.|||+||+|+|+.+..|++.|+++++++++++++.+.++|+++||++
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~ 150 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLS 150 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=1.2e-38 Score=269.03 Aligned_cols=143 Identities=46% Similarity=0.761 Sum_probs=140.2
Q ss_pred ChhhhhccCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceech
Q 026362 97 DLSSVLFRNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAAS 176 (240)
Q Consensus 97 dl~~~L~~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS 176 (240)
|++++|+++|+||++|+|+++++++++++|++++.+++.++|+||||||||++++|++|||.|+.++.+|+|+|.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 78999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+|++|+++|++|+|++.|||++|||+|+++..|++.|+++++++++++++.+.++|+++||++
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~ 143 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQP 143 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=1.3e-36 Score=255.35 Aligned_cols=134 Identities=31% Similarity=0.520 Sum_probs=131.6
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCC
Q 026362 106 RIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGG 185 (240)
Q Consensus 106 RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG 185 (240)
|+|||.|+|++.+++.|+++|++|+.+++.++|.||||||||+++++++|||+|+.++.+|+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 78999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 186 EKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 186 ~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
++|+|+++||+++|||||+++..|++.|++++++++++.++.+.++|+++||++
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~ 134 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQS 134 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999999999999999987
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.94 E-value=4.1e-26 Score=189.31 Aligned_cols=128 Identities=28% Similarity=0.384 Sum_probs=122.0
Q ss_pred EEEEccccCh---hHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHc
Q 026362 107 IIFIGQPINS---MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILA 183 (240)
Q Consensus 107 IIfl~g~Id~---~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~ 183 (240)
-|++.|+|++ .+++++.+.|.+++.+ ++|.|+||||||+++++++|+|.|+.++.||.+++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 4799999999 7999999999988653 799999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 184 aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+|++ |++.|+++||+|+|.++..|+..+++++.++++++++.+.+.|++++|++
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~ 132 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLS 132 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9996 99999999999999999999999999999999999999999999999975
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.88 E-value=6.9e-22 Score=168.84 Aligned_cols=124 Identities=19% Similarity=0.121 Sum_probs=110.1
Q ss_pred EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEc---ceechHHHHHHc
Q 026362 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA 183 (240)
Q Consensus 107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~---G~AaS~aslIl~ 183 (240)
+|-+.|.|++.++..+...|...+ +++.+.|.|+||||||+++++++|||+|+..+.||.|+|. |+|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 467889999988877777666544 4567899999999999999999999999999999999999 999999999999
Q ss_pred CCCCCcEEeccCceEeeecCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 184 GGEKGMRYAMPNARIMLNQPQSGSGGH-----VEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 184 aG~kgkR~a~PnA~iMIHqP~~g~~G~-----a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+|++ |++.|+++++.|+|..+ .|+ +.|.+.+.+++.++|+ |++++|++
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~ 134 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRN 134 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcC
Confidence 9997 99999999999999865 366 6788999998888888 99999986
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.88 E-value=7.9e-22 Score=162.81 Aligned_cols=131 Identities=21% Similarity=0.224 Sum_probs=122.9
Q ss_pred EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCC
Q 026362 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 186 (240)
Q Consensus 107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~ 186 (240)
+|++.|+|++.+..++++.|..++.+++.+.|.|++|||||++.++..|++.|+.++.||.+++.|.|+|+|.+|+++|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999987778999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCceEeeecCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 187 KGMRYAMPNARIMLNQPQSGSGGHV--EDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 187 kgkR~a~PnA~iMIHqP~~g~~G~a--~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+ |++.|+++|++|+|..+..|.. .+.+...+.++.+.+.+.+.+++++|++
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~ 133 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQT 133 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6 9999999999999998766554 7888888999999999999999999976
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.81 E-value=6.4e-19 Score=150.67 Aligned_cols=129 Identities=17% Similarity=0.108 Sum_probs=110.0
Q ss_pred EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEc---ceechHHHHHHc
Q 026362 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA 183 (240)
Q Consensus 107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~---G~AaS~aslIl~ 183 (240)
+|.|.|+|++..+..+..+|..++.+ +.+.|.|+||||||+++++..||+.|+.++.||.+.|. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 57889999999999999999988854 47889999999999999999999999999999999998 999999999999
Q ss_pred CCCCCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 184 GGEKGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 184 aG~kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+||+ |++.|+++|++|+|..+..+...+...+.+.+..++. ....|++++|++
T Consensus 82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~ 134 (187)
T cd07020 82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRN 134 (187)
T ss_pred hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCC
Confidence 9997 9999999999999985544433445555566666655 477788888874
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.73 E-value=8.4e-17 Score=137.86 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=102.3
Q ss_pred EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCC
Q 026362 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 186 (240)
Q Consensus 107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~ 186 (240)
+|.+.|+|++..+..+...|.....+ +.+.|.|+||||||.++++..||+.|+..+.||.+++.|.|+|+|++|+++|+
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 46789999998888777777666543 47899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 187 KGMRYAMPNARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 187 kgkR~a~PnA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+ +++.|+++++.|.|.....++..+ +.+......+.+-|++++|++
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~ 127 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRD 127 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCC
Confidence 7 999999999999999765554322 122233334445588888875
No 20
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.33 E-value=1.8e-11 Score=105.86 Aligned_cols=131 Identities=21% Similarity=0.135 Sum_probs=106.1
Q ss_pred EEEEccccC---hhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcC---CCeEEEEcceechHHHH
Q 026362 107 IIFIGQPIN---SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK---PKVGTVCFGVAASQAAI 180 (240)
Q Consensus 107 IIfl~g~Id---~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~---~~V~Tvv~G~AaS~asl 180 (240)
+|++.|+|+ ..+...+..+|..++.++..+.|.|++|||||++..+..|++.++.++ .||.+++.|.|+|+|..
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence 578999999 788999999999998877789999999999999999999999887664 69999999999999999
Q ss_pred HHcCCCCCcEEeccCceE------eee------------cCCCCCCC------------CHHHHHHHHHHHHHHHHHHHH
Q 026362 181 ILAGGEKGMRYAMPNARI------MLN------------QPQSGSGG------------HVEDVKRQVNEAVISRHVSLS 230 (240)
Q Consensus 181 Il~aG~kgkR~a~PnA~i------MIH------------qP~~g~~G------------~a~di~~~a~eL~~~r~~i~~ 230 (240)
|+++|++ |++.|++++ |.| ++.....| ..++.+..-+.|+.+.+.+.+
T Consensus 84 lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~ 161 (208)
T cd07023 84 IAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD 161 (208)
T ss_pred HHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 999999988 444 22211112 223555666677778888888
Q ss_pred HHHHHhCCC
Q 026362 231 FLLLHTLND 239 (240)
Q Consensus 231 iyA~~TG~~ 239 (240)
..++.-|++
T Consensus 162 ~Va~~R~~~ 170 (208)
T cd07023 162 VVAEGRGMS 170 (208)
T ss_pred HHHhcCCCC
Confidence 888877754
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.23 E-value=2.5e-10 Score=99.13 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=80.0
Q ss_pred EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcC--CCeEEEEcceechHHHHHHcC
Q 026362 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGVAASQAAIILAG 184 (240)
Q Consensus 107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~--~~V~Tvv~G~AaS~aslIl~a 184 (240)
+|.+.|.|+ .+...+...|..+..++..+.|.|.+|||||++..+..|++.|+.++ .||.+++.|.|+|+|.+|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 568888897 55678888888887666678899999999999999999999999998 899999999999999999999
Q ss_pred CCCCcEEeccCceE
Q 026362 185 GEKGMRYAMPNARI 198 (240)
Q Consensus 185 G~kgkR~a~PnA~i 198 (240)
|++ |++.|++.+
T Consensus 83 aD~--i~a~p~a~v 94 (207)
T TIGR00706 83 ADE--IVANPGTIT 94 (207)
T ss_pred CCE--EEECCCCeE
Confidence 997 999999875
No 22
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.17 E-value=8.3e-11 Score=108.88 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCC--CeEEEEcceechHHHHHHcCCCCCcEEeccCce
Q 026362 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKP--KVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197 (240)
Q Consensus 120 ~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~--~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~ 197 (240)
+.+.+.|..+...+..+.|.|.||||||++.+...||+.|+.++. ||++++.++|||.|.+|.+++++ .++.|++.
T Consensus 83 ~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd~--I~a~p~si 160 (317)
T COG0616 83 DDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAADK--IVADPSSI 160 (317)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCCE--EEecCCce
Confidence 355566666777677899999999999999999999999999987 49999999999999999999997 89999885
No 23
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.16 E-value=5.2e-10 Score=94.49 Aligned_cols=113 Identities=14% Similarity=-0.004 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhh---cCCCeEEEEcceechHHHHHHcCCCCCcEEecc
Q 026362 118 VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSW---IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194 (240)
Q Consensus 118 ~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~---~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~P 194 (240)
+.+.+...|..++..+..+-|.|.+|||||++.....+++.++. .+.||.+++.|.|+|.|..|+++|+. |++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 45688888888887666788999999999999887777776654 46899999999999999999999997 99999
Q ss_pred CceEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 195 NARIMLNQPQSGSGGHVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 195 nA~iMIHqP~~g~~G~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
+++|++|.++.+ ....-..++.+.+.+.+.+++..|++
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~ 138 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHST 138 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999976654 12223467788888888888888764
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.10 E-value=1.3e-09 Score=108.31 Aligned_cols=131 Identities=17% Similarity=0.082 Sum_probs=99.2
Q ss_pred EEEEccccChh-------HHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhc---CCCeEEEEcceech
Q 026362 107 IIFIGQPINSM-------VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAAS 176 (240)
Q Consensus 107 IIfl~g~Id~~-------~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~---~~~V~Tvv~G~AaS 176 (240)
+|++.|+|.+. ..+.+.++|..+..++..+.|.|+||||||+++++..|++.|+.. +.||.+.+.|+|+|
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 67888888742 245667777666665567899999999999999999999999755 37899999999999
Q ss_pred HHHHHHcCCCCCcEEeccCceE------eeecCC---------------CC--------CCCCHHHHHHHHHHHHHHHHH
Q 026362 177 QAAIILAGGEKGMRYAMPNARI------MLNQPQ---------------SG--------SGGHVEDVKRQVNEAVISRHV 227 (240)
Q Consensus 177 ~aslIl~aG~kgkR~a~PnA~i------MIHqP~---------------~g--------~~G~a~di~~~a~eL~~~r~~ 227 (240)
.|.+|.++|++ +++.|++.+ +.+... ++ -..+.++.+...+.++...+.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999996 999999977 555211 00 012456666677777777777
Q ss_pred HHHHHHHHhCCC
Q 026362 228 SLSFLLLHTLND 239 (240)
Q Consensus 228 i~~iyA~~TG~~ 239 (240)
+.+..++.-|++
T Consensus 470 F~~~Va~~R~l~ 481 (584)
T TIGR00705 470 FLSVVSAGRNLT 481 (584)
T ss_pred HHHHHHhhCCCC
Confidence 777777665554
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.09 E-value=2.8e-09 Score=92.97 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcC--CCeEEEEcceechHHHHHHcCCCCCcEEecc
Q 026362 117 MVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIK--PKVGTVCFGVAASQAAIILAGGEKGMRYAMP 194 (240)
Q Consensus 117 ~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~--~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~P 194 (240)
.+...+++.|..++.++..+.|.|.+|||||++.....|++.|+.++ .||.+++.|.|+|.|..|+++|++ +++.|
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~--i~a~~ 102 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAADR--IVVTP 102 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCE--EEEcC
Confidence 45678999999888777778899999999999999999999999988 999999999999999999999996 99999
Q ss_pred CceE------eeecCCCCC------------CC------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 195 NARI------MLNQPQSGS------------GG------------HVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 195 nA~i------MIHqP~~g~------------~G------------~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
++++ +.|....+. .| +.++-+..-+.++.+.+.+.+.+++..|++
T Consensus 103 ~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~ 177 (214)
T cd07022 103 TAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLS 177 (214)
T ss_pred CCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9985 334332110 12 234555556667778888888888887764
No 26
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.96 E-value=2e-08 Score=87.45 Aligned_cols=118 Identities=14% Similarity=-0.000 Sum_probs=90.8
Q ss_pred HHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHh---hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCc
Q 026362 120 QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMS---WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA 196 (240)
Q Consensus 120 ~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~---~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA 196 (240)
..+...|..+..++..+.|.|.+|||||++.....+++.|+ ..+.||.+++.|.|+|.|..|+++|++ +++.|++
T Consensus 24 ~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~--i~a~~~a 101 (211)
T cd07019 24 DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANY--IVANPST 101 (211)
T ss_pred HHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCE--EEEcCCC
Confidence 57888888888776778999999999999999888888665 456799999999999999999999997 9999998
Q ss_pred eEeeec---------------------CCC-C---CC-C---CHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 026362 197 RIMLNQ---------------------PQS-G---SG-G---HVEDVKRQVNEAVISRHVSLSFLLLHTLND 239 (240)
Q Consensus 197 ~iMIHq---------------------P~~-g---~~-G---~a~di~~~a~eL~~~r~~i~~iyA~~TG~~ 239 (240)
++...- +.. + .. . +.++-+.....++.+.+.+.+..++..|++
T Consensus 102 ~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~ 173 (211)
T cd07019 102 LTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHST 173 (211)
T ss_pred EEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 874321 111 1 00 0 223334445677888888998888888775
No 27
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.87 E-value=3.5e-08 Score=90.38 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=77.3
Q ss_pred ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcE
Q 026362 111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMR 190 (240)
Q Consensus 111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR 190 (240)
...||.+.++.+...+... +++++|.|.||+|||.+.++..|.+.|+....+++.++-..|.|+|++|++++++ -
T Consensus 69 ~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe--I 143 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE--I 143 (285)
T ss_pred ceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--E
Confidence 3457777777777665433 4467899999999999999999999999999999999999999999999999997 7
Q ss_pred EeccCceEeeecCCCC
Q 026362 191 YAMPNARIMLNQPQSG 206 (240)
Q Consensus 191 ~a~PnA~iMIHqP~~g 206 (240)
++.|+|.+-==.|..+
T Consensus 144 vM~p~a~LGpiDPqi~ 159 (285)
T PF01972_consen 144 VMGPGAVLGPIDPQIG 159 (285)
T ss_pred EECCCCccCCCCcccc
Confidence 8889998876666643
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.68 E-value=7.4e-08 Score=90.24 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=66.3
Q ss_pred EEEEccccChhHHHHHHHHHHhh-hccCCCCCceEEEeCCCccHhHHHHH---HHHHhhcCCCeEEEEcceechHHHHHH
Q 026362 107 IIFIGQPINSMVAQRAISQLVTL-ATIDEDADILMYLNCPGGSIYSVLAI---YDCMSWIKPKVGTVCFGVAASQAAIIL 182 (240)
Q Consensus 107 IIfl~g~Id~~~a~~~iaqLl~L-~~~d~~~~I~l~INSPGGsV~aGlaI---yd~L~~~~~~V~Tvv~G~AaS~aslIl 182 (240)
+|.+.|.|+...+..+...+..+ ....+.+.|.|.||||||++.+.--+ ...++..+.||++++.++|||.|.+|.
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 45677888875554444444332 22233367999999999999863333 334555567999999999999999999
Q ss_pred cCCCCCcEEeccCceEee
Q 026362 183 AGGEKGMRYAMPNARIML 200 (240)
Q Consensus 183 ~aG~kgkR~a~PnA~iMI 200 (240)
|+|++ .++.|.+.+..
T Consensus 174 saAD~--I~A~P~a~vGS 189 (330)
T PRK11778 174 CVADK--IIAAPFAIVGS 189 (330)
T ss_pred HhCCE--EEECCCCeEEe
Confidence 99996 88889886654
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.54 E-value=1.3e-06 Score=76.74 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=76.1
Q ss_pred ccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhc---CCCeEEEEcceechHHHHHHcCCCCCc
Q 026362 113 PINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAASQAAIILAGGEKGM 189 (240)
Q Consensus 113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~---~~~V~Tvv~G~AaS~aslIl~aG~kgk 189 (240)
..+......++..|..+..++..+-|.|.+|||||.+.+...|++.|+.+ +.||.+++.| |+|.|.+|.++|++
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~-- 101 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE-- 101 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE--
Confidence 34556677899999988877778899999999999999999999999765 4799999997 99999999999996
Q ss_pred EEeccCceEeeecC
Q 026362 190 RYAMPNARIMLNQP 203 (240)
Q Consensus 190 R~a~PnA~iMIHqP 203 (240)
+++.|++.+.+.-.
T Consensus 102 I~a~p~~~vg~iGv 115 (222)
T cd07018 102 IYLNPSGSVELTGL 115 (222)
T ss_pred EEECCCceEEeecc
Confidence 99999999998643
No 30
>PRK10949 protease 4; Provisional
Probab=98.47 E-value=4.5e-07 Score=91.12 Aligned_cols=89 Identities=21% Similarity=0.162 Sum_probs=74.4
Q ss_pred EEEEccccChh-------HHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhc---CCCeEEEEcceech
Q 026362 107 IIFIGQPINSM-------VAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWI---KPKVGTVCFGVAAS 176 (240)
Q Consensus 107 IIfl~g~Id~~-------~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~---~~~V~Tvv~G~AaS 176 (240)
+|.+.|.|.+. ..+.++.+|.....++..+.|.|.||||||++.+...|++.|+.. +.||.+.+.++|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 55677777542 245678888877777788999999999999999999999999755 46999999999999
Q ss_pred HHHHHHcCCCCCcEEeccCce
Q 026362 177 QAAIILAGGEKGMRYAMPNAR 197 (240)
Q Consensus 177 ~aslIl~aG~kgkR~a~PnA~ 197 (240)
.|.+|.++|++ -++.|.+.
T Consensus 410 ggY~iA~aad~--I~a~p~t~ 428 (618)
T PRK10949 410 GGYWISTPANY--IVASPSTL 428 (618)
T ss_pred HHHHHHHhcCE--EEECCCCc
Confidence 99999999996 78889653
No 31
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.2e-06 Score=81.72 Aligned_cols=97 Identities=23% Similarity=0.236 Sum_probs=82.1
Q ss_pred EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEc---ceechHHHHHHc
Q 026362 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCF---GVAASQAAIILA 183 (240)
Q Consensus 107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~---G~AaS~aslIl~ 183 (240)
++.+.|+||+.+++.+...|..-+. +..+.+.|.+|+|||-+++...|...+...+.||+.|+. +.|+|+|++|++
T Consensus 30 vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m 108 (436)
T COG1030 30 VIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILM 108 (436)
T ss_pred EEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHH
Confidence 5689999999999988888775554 335789999999999999999999999999999888884 369999999999
Q ss_pred CCCCCcEEeccCceEeeecCCCC
Q 026362 184 GGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 184 aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+++. -+|.|.+.+-=-+|-.+
T Consensus 109 ~~hi--aaMAPgT~iGaa~Pi~~ 129 (436)
T COG1030 109 ATHI--AAMAPGTNIGAATPIAG 129 (436)
T ss_pred hcCh--hhhCCCCcccccceecC
Confidence 9996 45668888877777643
No 32
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=97.72 E-value=0.00017 Score=64.37 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=71.9
Q ss_pred EEEccccChhHHHHHHHHHHhhhccCCCCCce-EEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCC
Q 026362 108 IFIGQPINSMVAQRAISQLVTLATIDEDADIL-MYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 186 (240)
Q Consensus 108 Ifl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~ 186 (240)
|...+++-+.-+......|..- .+..-++ +.+|||||++...+++-..++..+.++..--..+|+|+..++|++|.
T Consensus 79 VvVse~~a~~da~sal~~lir~---~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagGv 155 (245)
T COG3904 79 VVVSEPGANVDAASALGRLIRK---AGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGGV 155 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHhc---cCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcce
Confidence 3455554443333344444322 2222334 77899999999999999999999988888888899999999999999
Q ss_pred CCcEEeccCceEeeecCCCC
Q 026362 187 KGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 187 kgkR~a~PnA~iMIHqP~~g 206 (240)
. |++-+.+.+-+||+...
T Consensus 156 r--Rvve~~ayiGVHq~~~~ 173 (245)
T COG3904 156 R--RVVEDFAYIGVHQITTT 173 (245)
T ss_pred e--eeecccceeeeeecccc
Confidence 6 99999999999999954
No 33
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=97.29 E-value=0.0044 Score=51.94 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=68.6
Q ss_pred ccChhHHHHHHHHHHhhhccCCCCCceEEEe----CCCccHh-----------------HHHHHHHHHhhcCCCeEEEEc
Q 026362 113 PINSMVAQRAISQLVTLATIDEDADILMYLN----CPGGSIY-----------------SVLAIYDCMSWIKPKVGTVCF 171 (240)
Q Consensus 113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN----SPGGsV~-----------------aGlaIyd~L~~~~~~V~Tvv~ 171 (240)
.+|.++.+++.+.|..++..+..+-|.|.-+ |.|+++. ....++..+..++.||.+.+.
T Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~ 101 (195)
T cd06558 22 ALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVN 101 (195)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3677888899999888876433332222222 4455543 224566677788899999999
Q ss_pred ceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 207 (240)
Q Consensus 172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~ 207 (240)
|.|.+.|..+++++|- |++.++++|.+.....|.
T Consensus 102 G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~ 135 (195)
T cd06558 102 GAALGGGLELALACDI--RIAAEDAKFGLPEVKLGL 135 (195)
T ss_pred CeeecHHHHHHHhCCE--EEecCCCEEechhhhcCC
Confidence 9999999999999997 999999999998776553
No 34
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.60 E-value=0.034 Score=55.95 Aligned_cols=83 Identities=11% Similarity=0.022 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHhhhccCCCCCceEEEeC-CCccHhHHHHHHHHHhhcC---CCeEEEEcceechHHHHHHcCCCCCcEEe
Q 026362 117 MVAQRAISQLVTLATIDEDADILMYLNC-PGGSIYSVLAIYDCMSWIK---PKVGTVCFGVAASQAAIILAGGEKGMRYA 192 (240)
Q Consensus 117 ~~a~~~iaqLl~L~~~d~~~~I~l~INS-PGGsV~aGlaIyd~L~~~~---~~V~Tvv~G~AaS~aslIl~aG~kgkR~a 192 (240)
.....++.+|.....++..+-|.|.+|+ |||.+.....|++.|+..+ .||.++..+. +|.+.+|.+++++ .++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD~--I~~ 152 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFADE--IIL 152 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCCE--EEE
Confidence 4566899999988888888999999996 6778888888999998664 7899988765 6889999999996 888
Q ss_pred ccCceEeeec
Q 026362 193 MPNARIMLNQ 202 (240)
Q Consensus 193 ~PnA~iMIHq 202 (240)
.|.+.+.++-
T Consensus 153 ~p~G~v~~~G 162 (584)
T TIGR00705 153 NPMGSVDLHG 162 (584)
T ss_pred CCCceEEeec
Confidence 8998887643
No 35
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.49 E-value=0.02 Score=53.83 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=71.9
Q ss_pred cCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHHh---hcCCCeEEEEcce
Q 026362 104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGV 173 (240)
Q Consensus 104 ~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L~---~~~~~V~Tvv~G~ 173 (240)
++++-..+|-++++-+..... +..+.... .-||.-++|+||..+. .+-+|...+. ..+.|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R-~m~lA~~f-~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALR-LMKMAERF-KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 455555567777765544433 44444333 4689999999998732 2345655554 5568999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|+|.|++.++.++. +++.|++.+.+=.|.+.
T Consensus 200 ggsGGAla~~~aD~--v~m~~~a~~sVisPEg~ 230 (316)
T TIGR00513 200 GGSGGALAIGVGDK--VNMLEYSTYSVISPEGC 230 (316)
T ss_pred cccHHHhhhccCCE--EEEecCceEEecCHHHH
Confidence 99999998888886 89999999999988864
No 36
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=96.46 E-value=0.025 Score=53.28 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=71.6
Q ss_pred cCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHHh---hcCCCeEEEEcce
Q 026362 104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGV 173 (240)
Q Consensus 104 ~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L~---~~~~~V~Tvv~G~ 173 (240)
++++-..+|-++.+.+..... +..+.... .-||.-++++||..+. .+-+|...+. ..+.|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~peg~rKa~R-~m~lA~~f-~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe 199 (319)
T PRK05724 122 KEKIRRNFGMPRPEGYRKALR-LMKMAEKF-GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE 199 (319)
T ss_pred cccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 555556677777775544433 33343333 4689999999997643 1234544444 6668999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.|.|++.++.++. .++.|+|.+.+=.|.+.
T Consensus 200 g~sGGAla~~~aD~--v~m~~~A~~svisPEg~ 230 (319)
T PRK05724 200 GGSGGALAIGVGDR--VLMLEYSTYSVISPEGC 230 (319)
T ss_pred ccHHHHHHHhccCe--eeeecCceEeecCHHHH
Confidence 99999999988886 88999999999888754
No 37
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=96.44 E-value=0.019 Score=54.12 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=70.3
Q ss_pred cCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHH---hhcCCCeEEEEcce
Q 026362 104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGV 173 (240)
Q Consensus 104 ~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L---~~~~~~V~Tvv~G~ 173 (240)
++|+-..+|-++++-...... +..+.... .-||.-++++||..+. .+-+|...+ ...+.|+.+++.|-
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~R-lm~lA~~f-~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGe 202 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALR-LMKHANKF-GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE 202 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCc
Confidence 344434455566665544433 33343333 4689999999997743 234565554 46678999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|+|.|++.++.++. .+++++|.+.+=.|.+.
T Consensus 203 ggsGGAlal~~aD~--V~m~e~a~~sVisPEg~ 233 (322)
T CHL00198 203 GGSGGALGIGIGDS--IMMLEYAVYTVATPEAC 233 (322)
T ss_pred ccHHHHHhhhcCCe--EEEeCCeEEEecCHHHH
Confidence 99999998888886 89999999999999754
No 38
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=96.38 E-value=0.072 Score=47.34 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=65.8
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEe------CCCccHhH--------------HHHHHHHHhhcCCCeEEEEcce
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN------SPGGsV~a--------------GlaIyd~L~~~~~~V~Tvv~G~ 173 (240)
+|.++...+.+.+..++.++..+ .|.|. |.|+|+.. ...+++.|..++.||.+.+.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~ 106 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVR--VVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGP 106 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence 78888888888888877533222 22333 33444422 2346667788899999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.+.|.-++++||- |++.++++|-+.....|
T Consensus 107 a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G 137 (259)
T PRK06688 107 AVGVGVSLALACDL--VYASESAKFSLPFAKLG 137 (259)
T ss_pred eecHHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence 99999999999997 99999999888665544
No 39
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.23 E-value=0.019 Score=59.12 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=67.3
Q ss_pred EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHHh---hcCCCeEEEEcceechHH
Q 026362 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGVAASQA 178 (240)
Q Consensus 109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L~---~~~~~V~Tvv~G~AaS~a 178 (240)
..+|-.+++-+... ..+..+.... .-||.-+|++||..+. .+-+|...+. ....|+.+++.|-|+|.|
T Consensus 218 rnfG~~~peGyRKA-lRlmkLAekf-gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGG 295 (762)
T PLN03229 218 RNFGMPTPHGYRKA-LRMMYYADHH-GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGG 295 (762)
T ss_pred ccCCCCCHHHHHHH-HHHHHHHHHc-CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHH
Confidence 34444555543333 2333343333 4689999999998762 3456666555 556899999999999999
Q ss_pred HHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 179 AIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 179 slIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
++.++.++. .++.|+|.+.+=.|.+.
T Consensus 296 AlA~g~aD~--VlMle~A~~sVisPEga 321 (762)
T PLN03229 296 ALAIGCANK--LLMLENAVFYVASPEAC 321 (762)
T ss_pred HHHhhcCCE--EEEecCCeEEecCHHHH
Confidence 999999986 88899999888888754
No 40
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=96.22 E-value=0.062 Score=47.92 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=64.0
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH------------------HHHHHHHhhcCCCeEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV------------------LAIYDCMSWIKPKVGT 168 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG------------------laIyd~L~~~~~~V~T 168 (240)
+|.++..++.+.|..++..+ ++. |.|. |.|+|+... ..++..|...+.||.+
T Consensus 27 l~~~~~~~l~~~l~~~~~d~---~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIA 103 (260)
T PRK07511 27 LHPDMYAAGIEALNTAERDP---SIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIA 103 (260)
T ss_pred CCHHHHHHHHHHHHHhccCC---CeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 77788888888877776432 333 3333 344554321 2355667788899999
Q ss_pred EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.|.|.+.|..|++++|- |++.++++|-+..-.-|
T Consensus 104 av~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 139 (260)
T PRK07511 104 AVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVG 139 (260)
T ss_pred EECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccC
Confidence 9999999999999999997 99999999888665544
No 41
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.20 E-value=0.059 Score=48.66 Aligned_cols=110 Identities=14% Similarity=0.165 Sum_probs=72.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccH----------hHHHHHHHHHhhc---CCCeEEEEcceechHHHH
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLNCPGGSI----------YSVLAIYDCMSWI---KPKVGTVCFGVAASQAAI 180 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV----------~aGlaIyd~L~~~---~~~V~Tvv~G~AaS~asl 180 (240)
++-+-+......+...-..+..-||...+++||-.+ .++-.+.+++... +.|+.+++.|.+.|.|.+
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 554445555554444311234679999999999653 3344344555544 499999999999998888
Q ss_pred HHcC-CCCCcEEeccCceEeeecCCCC---CCCCHHHHHHHHHHHHHHH
Q 026362 181 ILAG-GEKGMRYAMPNARIMLNQPQSG---SGGHVEDVKRQVNEAVISR 225 (240)
Q Consensus 181 Il~a-G~kgkR~a~PnA~iMIHqP~~g---~~G~a~di~~~a~eL~~~r 225 (240)
-+.. ++ ..+++|++.+-+=.|.+. .+-+.+++++.++++..+.
T Consensus 125 amg~~ad--~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a 171 (238)
T TIGR03134 125 AHGLQAD--RIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPVFA 171 (238)
T ss_pred HHccCcC--eEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhhhc
Confidence 7753 44 489999999888777754 3556666666666554433
No 42
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=96.18 E-value=0.051 Score=49.14 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=65.6
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH-------------------HHHHHHHhhcCCCeE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV-------------------LAIYDCMSWIKPKVG 167 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG-------------------laIyd~L~~~~~~V~ 167 (240)
++.++..++.+.|..++.+ .++. |.|. |-|+|+... ..+++.|..++.||.
T Consensus 41 l~~~~~~eL~~~l~~~~~d---~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 117 (277)
T PRK08258 41 LTFESYAELRDLFRELVYA---DDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPII 117 (277)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 6777788888887777642 2333 3333 334554321 135667778899999
Q ss_pred EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 207 (240)
Q Consensus 168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~ 207 (240)
+.+.|.|.+.|.-|.++||- |++.++++|.+.....|.
T Consensus 118 AaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl 155 (277)
T PRK08258 118 AAVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGL 155 (277)
T ss_pred EEECCeeehHHHHHHHhCCE--EEecCCCEEeccccccCc
Confidence 99999999999999999997 999999999887766554
No 43
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=96.14 E-value=0.054 Score=48.18 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=64.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhH------------HHHHHHHHhhcCCCeEEEEccee
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYS------------VLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~a------------GlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
+|.++.+++.+.+..++.++ ++.+.| - |.|+|+.. ...++..|..++.||.+.+.|.|
T Consensus 24 l~~~~~~~l~~a~~~~~~d~---~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 100 (248)
T PRK06072 24 LNLEMRNEFISKLKQINADP---KIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVT 100 (248)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 77888888888888776532 343332 2 44566532 11245567778899999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
...|.-+.++||- |++.++++|-+.....|
T Consensus 101 ~GgG~~lal~cD~--~ia~~~a~f~~~~~~~G 130 (248)
T PRK06072 101 AGACIGIALSTDF--KFASRDVKFVTAFQRLG 130 (248)
T ss_pred ehHHHHHHHhCCE--EEEcCCCEEecchhhcC
Confidence 9999999999997 99999999987665544
No 44
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=95.98 E-value=0.065 Score=48.88 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=71.8
Q ss_pred cCcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhH-------HHHHHHHHh---hcCCCeEEEEcce
Q 026362 104 RNRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYS-------VLAIYDCMS---WIKPKVGTVCFGV 173 (240)
Q Consensus 104 ~~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~a-------GlaIyd~L~---~~~~~V~Tvv~G~ 173 (240)
++++...+|-++.+-+.... .+..+..+. .-||.-++||||..+.. +-.|..++. ..+.|+.+++.|-
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~-R~~~lA~~~-~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKAL-RLMKQAEKF-GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHH-HHHHHHHHc-CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 44555566778777554443 344444333 46899999999987521 234655544 4468999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.|.|++.++.++. .++.|++.+.+=.|.+.
T Consensus 147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~ 177 (256)
T PRK12319 147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGF 177 (256)
T ss_pred cCcHHHHHhhcCCE--EEEecCceEEEcCHHHH
Confidence 99999999999986 89999999999888753
No 45
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=95.97 E-value=0.055 Score=48.59 Aligned_cols=88 Identities=11% Similarity=0.128 Sum_probs=63.1
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH-------------------------HHHHHHHhh
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV-------------------------LAIYDCMSW 161 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG-------------------------laIyd~L~~ 161 (240)
+|.++...+.+.|..++..+ ++. |.|-+. |+++..- ...++.|..
T Consensus 30 l~~~~~~~L~~~l~~~~~d~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (272)
T PRK06210 30 WTPVMEAEVYAAMDRAEADP---AVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTA 106 (272)
T ss_pred CCHHHHHHHHHHHHHhccCC---CeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHh
Confidence 77777888888887776422 232 223333 3444321 123466778
Q ss_pred cCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 162 ~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
++.||.+.+.|.|.+.|.-|+++||- |++.++++|-+..+.-|
T Consensus 107 ~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 149 (272)
T PRK06210 107 LRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRG 149 (272)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcC
Confidence 89999999999999999999999997 99999999987666544
No 46
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=95.97 E-value=0.11 Score=46.32 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=65.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH-----------------HHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV-----------------LAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG-----------------laIyd~L~~~~~~V~Tv 169 (240)
+|.++...+.+.|..++.++ +|. |.|.+. |+|+... ..+++.|...+.||.+.
T Consensus 27 l~~~~~~~l~~al~~~~~d~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 103 (257)
T PRK06495 27 LSRELRDELIAVFDEISERP---DVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAA 103 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 77888888888888776533 232 223333 4444321 12456677888999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCCCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGSGG 209 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~~G 209 (240)
+.|.|.+.|.-|.++||- |++.++++|-+-...-|..|
T Consensus 104 v~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~ 141 (257)
T PRK06495 104 VNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAG 141 (257)
T ss_pred ECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccc
Confidence 999999999999999997 99999999988666655444
No 47
>PRK05869 enoyl-CoA hydratase; Validated
Probab=95.93 E-value=0.14 Score=45.05 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=64.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhHH---------------HHHHHHHhhcCCCeEEEEcc
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYSV---------------LAIYDCMSWIKPKVGTVCFG 172 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~aG---------------laIyd~L~~~~~~V~Tvv~G 172 (240)
++.++...+.+.|..++.++..+ -|.|.+. |+++... ..+++.|..++.||.+.+.|
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G 108 (222)
T PRK05869 31 LTRQVYREIVAAANELGRRDDVA--AVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG 108 (222)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 77788888888888877533222 2333433 4443321 23566778889999999999
Q ss_pred eechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|...|..+.++||- |++.++++|-+....-|
T Consensus 109 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 140 (222)
T PRK05869 109 YALGAGLTLALAADW--RVSGDNVKFGATEILAG 140 (222)
T ss_pred EeecHHHHHHHhCCE--EEecCCCEEcCchhccC
Confidence 999999999999997 99999998877655544
No 48
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=95.91 E-value=0.07 Score=46.88 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=67.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHh---------------HHHHHHHHHhhcCCCeEEEEcc
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIY---------------SVLAIYDCMSWIKPKVGTVCFG 172 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~---------------aGlaIyd~L~~~~~~V~Tvv~G 172 (240)
+|.++..++...|..++.++..+ .|.|.+. |+++. ....++..|..++.||.+.+.|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 78888899999998888644323 4444443 44442 3445788888999999999999
Q ss_pred eechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|.+.|..+++++|- |++.+++.|-+....-|
T Consensus 100 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 131 (245)
T PF00378_consen 100 HAVGGGFELALACDF--RIAAEDAKFGFPEVRLG 131 (245)
T ss_dssp EEETHHHHHHHHSSE--EEEETTTEEETGGGGGT
T ss_pred cccccccccccccce--EEeecccceeeeecccC
Confidence 999999999999996 99999999776555544
No 49
>PRK10949 protease 4; Provisional
Probab=95.87 E-value=0.12 Score=52.53 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHH-HHHHHHHhhcC---CCeEEEEcceechHHHHHHcCCCCCcEE
Q 026362 116 SMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSV-LAIYDCMSWIK---PKVGTVCFGVAASQAAIILAGGEKGMRY 191 (240)
Q Consensus 116 ~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aG-laIyd~L~~~~---~~V~Tvv~G~AaS~aslIl~aG~kgkR~ 191 (240)
+....+++..|.....++..+-|.|.+|+|||...+. ..|++.|+..+ .||.++ ...+++.+.+|++++|+ .+
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~ 170 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY 170 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence 3445678999888888788899999999998876655 67999887665 588886 44456788888888996 88
Q ss_pred eccCceEeeecC
Q 026362 192 AMPNARIMLNQP 203 (240)
Q Consensus 192 a~PnA~iMIHqP 203 (240)
+.|.+.+.++-.
T Consensus 171 l~P~G~v~~~G~ 182 (618)
T PRK10949 171 LSPQGVVDLHGF 182 (618)
T ss_pred ECCCceEEEeee
Confidence 889998887543
No 50
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=95.82 E-value=0.078 Score=47.17 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=64.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhH--------------HHHHHHHHhhcCCCeEEEEcc
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYS--------------VLAIYDCMSWIKPKVGTVCFG 172 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~a--------------GlaIyd~L~~~~~~V~Tvv~G 172 (240)
+|.++.+++...|..++.+ +++.+.| . |.|+++.+ ...++..|..++.||.+.+.|
T Consensus 30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (251)
T PRK06023 30 ITRAMYATMAKALKAADAD---DAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDG 106 (251)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 7788888888888777653 2344333 2 33455431 123566788889999999999
Q ss_pred eechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 173 VAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 173 ~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|...|.-|.++||- |++.++++|.+.....|
T Consensus 107 ~a~GgG~~la~acD~--ria~~~a~f~~pe~~~G 138 (251)
T PRK06023 107 LAIGIGTTIHLHCDL--TFASPRSLFRTPFVDLA 138 (251)
T ss_pred ceecHHHHHHHhCCE--EEEeCCCEecCcccccC
Confidence 999999999999997 99999999987665444
No 51
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=95.80 E-value=0.083 Score=47.12 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=64.6
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH-------------HHHHHHHHhhcCCCeEEEEcce
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~ 173 (240)
+|.++..++.+.+..++.++ ++. |.|. |.|+|+.. ...+++.|..++.||.+.+.|.
T Consensus 26 l~~~~~~~L~~~~~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDT---SIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGY 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 67788888888887776432 333 2223 34555432 1235667788899999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.+.|.-|+++||- |++.++++|.+.....|
T Consensus 103 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 133 (255)
T PRK09674 103 ALGAGCELALLCDI--VIAGENARFGLPEITLG 133 (255)
T ss_pred eehHHHHHHHhCCE--EEecCCCEEeCchhhcC
Confidence 99999999999997 99999999887665544
No 52
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=95.80 E-value=0.083 Score=47.29 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=61.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-Ee-------CCCccHhH--------------HHHHHHHHhhcCCCeEEEEc
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LN-------CPGGSIYS--------------VLAIYDCMSWIKPKVGTVCF 171 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN-------SPGGsV~a--------------GlaIyd~L~~~~~~V~Tvv~ 171 (240)
+|.++...+.+.|..++.+ .+|.+. +. |.|+|+.. ...++..|..++.||.+.+.
T Consensus 26 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (261)
T PRK03580 26 IDAKTSFAMGEVFLNFRDD---PELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN 102 (261)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC
Confidence 6777788888887777643 234332 23 33444432 12345667788899999999
Q ss_pred ceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
|.|.+.|.-++++||- |++.++++|-+-...
T Consensus 103 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~ 133 (261)
T PRK03580 103 GYAFGGGFELALAADF--IVCADNASFALPEAK 133 (261)
T ss_pred CeeehHHHHHHHHCCE--EEecCCCEEeCcccc
Confidence 9999999999999997 999999988764433
No 53
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=95.79 E-value=0.077 Score=47.47 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=64.2
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH--------------H-------HHHHHHHhhcCCC
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS--------------V-------LAIYDCMSWIKPK 165 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a--------------G-------laIyd~L~~~~~~ 165 (240)
+|.++...+.+.|..++.+++ ++. |.|. |.|+++.+ + ..++..|...+.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~--~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 105 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKA--EVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP 105 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCC--ceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 677888888888877764322 233 2223 33444432 1 1255677788999
Q ss_pred eEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 166 VGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 166 V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.+.+.|.|...|.-+.+++|- |++.++++|-+..+.-|
T Consensus 106 vIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG 144 (266)
T PRK05981 106 IVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIG 144 (266)
T ss_pred EEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcC
Confidence 9999999999999999999997 99999999987666644
No 54
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=95.77 E-value=0.085 Score=47.03 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=63.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH----------------------HHHHHHHhhcCC
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV----------------------LAIYDCMSWIKP 164 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG----------------------laIyd~L~~~~~ 164 (240)
+|.++.+++...|..++.++ ++. |.|. |.|+|+... ..++..|+.++.
T Consensus 27 l~~~~~~~l~~al~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 103 (262)
T PRK07509 27 LDFAMFEELIATIKRLKKDR---GIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPV 103 (262)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCC
Confidence 77888888888888777533 333 3333 345554321 113345677889
Q ss_pred CeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 165 ~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
||.+.+.|.|...|.-|.++||- |++.++++|-+.....|
T Consensus 104 pvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 143 (262)
T PRK07509 104 PVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWG 143 (262)
T ss_pred CEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccC
Confidence 99999999999999999999997 99999999888664433
No 55
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=95.77 E-value=0.095 Score=46.92 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=63.8
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeC-------CCccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNC-------PGGSIYS---------------VLAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INS-------PGGsV~a---------------GlaIyd~L~~~~~~V~Tvv 170 (240)
+|.++...+.+.|..++.++ ++. |.|-+ .|+|+.. ...+++.|...+.||.+.+
T Consensus 31 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 107 (256)
T PRK06143 31 LGTPVILALTQALRWLAADP---DVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI 107 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 78888888988888877533 333 33333 2344322 1235667778899999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|.|.+.|.-|.++||- |++.++++|.+-....|
T Consensus 108 ~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 141 (256)
T PRK06143 108 PGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVG 141 (256)
T ss_pred CCEEeehhHHHHHhCCE--EEecCCCEEeCCccccC
Confidence 99999999999999997 99999998887444433
No 56
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=95.76 E-value=0.052 Score=52.92 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=64.9
Q ss_pred cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh-------HHHHHHHHH---hhcCCCeEEEEcceechHHHHH
Q 026362 112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY-------SVLAIYDCM---SWIKPKVGTVCFGVAASQAAII 181 (240)
Q Consensus 112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~-------aGlaIyd~L---~~~~~~V~Tvv~G~AaS~aslI 181 (240)
|-++++-+..... +..+.... .-||.-+||+||.... .+-+|...+ -..+.|+.+++.|-++|.|++.
T Consensus 200 G~~~peGyRKAlR-~mklAekf-~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla 277 (431)
T PLN03230 200 AMPQPNGYRKALR-FMRHAEKF-GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA 277 (431)
T ss_pred CCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence 3455554443333 33343333 4689999999997653 234566555 3556899999999999999999
Q ss_pred HcCCCCCcEEeccCceEeeecCCCC
Q 026362 182 LAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 182 l~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
++.|+. .+++|||.+.+=.|.+.
T Consensus 278 lg~aD~--VlMle~A~ysVisPEga 300 (431)
T PLN03230 278 IGCGNR--MLMMENAVYYVASPEAC 300 (431)
T ss_pred hhcCCE--EEEecCCEEEecCHHHH
Confidence 998985 88999999999888743
No 57
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=95.75 E-value=0.094 Score=46.88 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=63.6
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-Ee-------CCCccHhHH--------------HHHHHHHhhcCCCeEEEEc
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LN-------CPGGSIYSV--------------LAIYDCMSWIKPKVGTVCF 171 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN-------SPGGsV~aG--------------laIyd~L~~~~~~V~Tvv~ 171 (240)
+|.++...+...|..++.++ +|.+. |- |.|+|+..- ..+++.|..++.||.+.+.
T Consensus 26 l~~~~~~~l~~al~~~~~d~---~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDR---QIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ 102 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67778888888877776533 34322 22 334554321 1256677888999999999
Q ss_pred ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.|.+.|.-|+++||- |++.++++|-+-.+.-|
T Consensus 103 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G 135 (256)
T TIGR03210 103 GYAIGGGNVLVTICDL--TIASEKAQFGQVGPKVG 135 (256)
T ss_pred CEEehhhHHHHHhCCE--EEEeCCCEEeccccccc
Confidence 9999999999999997 99999999887554433
No 58
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=95.71 E-value=0.095 Score=46.94 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=62.4
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH------------------HHHHHHHhhcCCCeEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV------------------LAIYDCMSWIKPKVGT 168 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG------------------laIyd~L~~~~~~V~T 168 (240)
+|.++...+.+.|..++.++ ++. |.|.+. |+|+..- ..+++.|+.++.||.+
T Consensus 29 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 105 (262)
T PRK07468 29 LSARMIAELTTAARRLAADA---AVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIG 105 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 67777778887777665422 333 333333 4554310 1256778889999999
Q ss_pred EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.|.|.+.|.-|+++||- |++.++++|-+-...-|
T Consensus 106 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G 141 (262)
T PRK07468 106 RIQGQAFGGGVGLISVCDV--AIAVSGARFGLTETRLG 141 (262)
T ss_pred EECCEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccC
Confidence 9999999999999999997 99999998777554433
No 59
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=95.70 E-value=0.098 Score=46.76 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=63.1
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH------------HHHHHHHHhhcCCCeEEEEccee
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS------------VLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a------------GlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
+|.++...+.+.|..++..+ ++. |.|- |.|+|+.+ ...++..|..++.||.+.+.|.|
T Consensus 24 l~~~~~~~l~~~l~~~~~~~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 100 (251)
T TIGR03189 24 VDAAMIAALSAALGEHLEDS---ALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQC 100 (251)
T ss_pred CCHHHHHHHHHHHHHHHcCC---CceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCee
Confidence 78888888888888776533 333 3333 33455432 01245567788899999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.|.-|.++||- |++.++++|-+-...-|
T Consensus 101 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G 130 (251)
T TIGR03189 101 LGGGLEVAAAGNL--MFAAPDAKLGQPEIVLG 130 (251)
T ss_pred eeHHHHHHHhCCE--EEEcCCCEEeCchhhcC
Confidence 9999999999997 99999988877444433
No 60
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=95.67 E-value=0.12 Score=46.48 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=63.8
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceE-EEe------CCCccHhH-------------HHHHHHHHhhcCCCeEEEEcce
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILM-YLN------CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~IN------SPGGsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~ 173 (240)
+|.++..++...|..++.++ ++.+ .|. |.|+|+.. ...+++.|..++.||.+.+.|.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~ 104 (258)
T PRK06190 28 LSAALRRALFAALAEADADD---DVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGA 104 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 78888888888888776532 3332 222 44566542 1246677888899999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
|.+.|.-|++++|- |++.++++|-+-...
T Consensus 105 a~GgG~~lalacD~--~ia~~~a~f~~pe~~ 133 (258)
T PRK06190 105 AVTGGLELALACDI--LIASERARFADTHAR 133 (258)
T ss_pred eecHHHHHHHhCCE--EEEeCCCEEECcccc
Confidence 99999999999997 999999988764443
No 61
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=95.67 E-value=0.24 Score=44.50 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=62.7
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEeC--------CCccHhHH--------------HHHHHHHhhcCCCeEEEEc
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLNC--------PGGSIYSV--------------LAIYDCMSWIKPKVGTVCF 171 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INS--------PGGsV~aG--------------laIyd~L~~~~~~V~Tvv~ 171 (240)
+|.++...+.+.+..++. |+.+ .|.|.+ .|+|+... ..+++.|...+.||.+.+.
T Consensus 28 l~~~~~~~l~~al~~~~~-d~v~--~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~ 104 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNR-PEIR--VVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVE 104 (261)
T ss_pred CCHHHHHHHHHHHHHHhc-CCce--EEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 677888888888877764 2222 233443 34444321 2356677888899999999
Q ss_pred ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.|...|.-|+++||- |++.++++|.+-....|
T Consensus 105 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 137 (261)
T PRK11423 105 GSVWGGAFELIMSCDL--IIAASTSTFAMTPANLG 137 (261)
T ss_pred cEEechHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence 9999999999999997 99999998877554433
No 62
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=95.66 E-value=0.11 Score=47.01 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=59.7
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhHH----------------------HHHHHHHhhcCC
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYSV----------------------LAIYDCMSWIKP 164 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~aG----------------------laIyd~L~~~~~ 164 (240)
+|.++..++.+.|..++.++ ++.+. |. |.|+|+... ..+++.|..++.
T Consensus 34 l~~~~~~~L~~~l~~~~~d~---~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 110 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDN---SVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQ 110 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 67777788888877776432 34332 23 334554321 124556778889
Q ss_pred CeEEEEcceechHHHHHHcCCCCCcEEeccCceEeee
Q 026362 165 KVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201 (240)
Q Consensus 165 ~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIH 201 (240)
||.+.+.|.|.+.|.-|+++||- |++.++++|.+-
T Consensus 111 PvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~p 145 (276)
T PRK05864 111 PVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRAA 145 (276)
T ss_pred CEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecCc
Confidence 99999999999999999999997 999999888653
No 63
>PLN02600 enoyl-CoA hydratase
Probab=95.61 E-value=0.12 Score=46.15 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=62.7
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-EeC-------CCccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LNC-------PGGSIYS---------------VLAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-INS-------PGGsV~a---------------GlaIyd~L~~~~~~V~Tvv 170 (240)
++.++.+++.+.+..++.++ ++.+. |-+ .|+|+.. ...+++.|..++.||.+.+
T Consensus 19 l~~~~~~~l~~~~~~~~~d~---~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 95 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADA---SARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVV 95 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 67888888888887776533 33322 223 2455432 1124556677889999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|.|.+.|.-|.+++|- |++.++++|.+-....|
T Consensus 96 ~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 129 (251)
T PLN02600 96 EGAALGGGLELALSCDL--RICGEEAVFGLPETGLA 129 (251)
T ss_pred cCeecchhHHHHHhCCE--EEeeCCCEEeCcccccC
Confidence 99999999999999997 99999999887444433
No 64
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=95.54 E-value=0.12 Score=46.10 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=63.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCCC-------ccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCPG-------GSIYS---------------VLAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSPG-------GsV~a---------------GlaIyd~L~~~~~~V~Tvv 170 (240)
+|.++..++.+.+..++.++ ++. |.|-+.| +|+.. ...+++.|..++.||.+.+
T Consensus 28 l~~~~~~~l~~~~~~~~~d~---~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDD---NVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 67778888888877776432 333 3334434 44321 1235667888899999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|.|.+.|.-|+++||- |++.++++|.+....-|
T Consensus 105 ~G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~G 138 (260)
T PRK05809 105 NGFALGGGCELSMACDI--RIASEKAKFGQPEVGLG 138 (260)
T ss_pred cCeeecHHHHHHHhCCE--EEeeCCCEEeCcccccC
Confidence 99999999999999997 99999999887555433
No 65
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=95.52 E-value=0.1 Score=47.64 Aligned_cols=50 Identities=18% Similarity=0.007 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+++.|...+.||.+.+.|.|.+.|.-|+++||- |++.++++|-+.....|
T Consensus 105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G 154 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRG 154 (296)
T ss_pred HHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcC
Confidence 456677888999999999999999999999997 99999999988665433
No 66
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=95.49 E-value=0.11 Score=46.04 Aligned_cols=85 Identities=12% Similarity=0.192 Sum_probs=62.1
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH----------HHHHHHHHhhcCCCeEEEEcceech
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS----------VLAIYDCMSWIKPKVGTVCFGVAAS 176 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a----------GlaIyd~L~~~~~~V~Tvv~G~AaS 176 (240)
+|.++..++.+.+..++. + ++. |.|- |.|+|+.. ...+++.|..++.||.+.+.|.|.+
T Consensus 24 l~~~~~~~l~~al~~~~~-~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~G 99 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-E---SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIG 99 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-C---CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Confidence 788888888888877662 2 233 3333 33455431 1235667778899999999999999
Q ss_pred HHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 177 QAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
.|.-+.++||- |++.++++|-+-...
T Consensus 100 gG~~lal~cD~--~ia~~~a~f~~pe~~ 125 (243)
T PRK07854 100 AGLQLAMACDL--RVVAPEAYFQFPVAK 125 (243)
T ss_pred cHHHHHHhCCE--EEEcCCCEEeccccc
Confidence 99999999997 999999988764433
No 67
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=95.48 E-value=0.14 Score=45.76 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=61.6
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhH-------------HHHHHHHHhhcCCCeEEEEcce
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~ 173 (240)
+|.++..++.+.|..++.++ ++.+. |- |.|+|+.. ...+++.|..++.||.+.+.|.
T Consensus 32 l~~~~~~~l~~al~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDP---DIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGY 108 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 77788888888887776432 33322 22 33455432 1235666778889999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
|.+.|.-|.++||- |++.++++|.+-...
T Consensus 109 a~GgG~~lalacD~--ria~~~a~f~~pe~~ 137 (261)
T PRK08138 109 ALGGGCELAMHADI--IVAGESASFGQPEIK 137 (261)
T ss_pred EEcHHHHHHHhCCE--EEecCCCEeeCcccc
Confidence 99999999999996 888888888764443
No 68
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=95.46 E-value=0.11 Score=46.92 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=63.4
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhHH--------------------------HHHHHHHh
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYSV--------------------------LAIYDCMS 160 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~aG--------------------------laIyd~L~ 160 (240)
+|.++..++.+.|..++.++ ++.+. |- |-|+|+... ..+++.|.
T Consensus 32 l~~~~~~~l~~al~~~~~d~---~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 108 (275)
T PLN02664 32 LSLDFFTEFPKALSSLDQNP---NVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIE 108 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887776533 23322 23 334554321 12456677
Q ss_pred hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 161 ~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.++.||.+.+.|.|.+.|..|.++||- |++.++++|.+-....|
T Consensus 109 ~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G 152 (275)
T PLN02664 109 QCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLA 152 (275)
T ss_pred hCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhC
Confidence 889999999999999999999999997 99999999887554433
No 69
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=95.39 E-value=0.15 Score=45.58 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=63.4
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC-------CccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP-------GGSIYS---------------VLAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP-------GGsV~a---------------GlaIyd~L~~~~~~V~Tvv 170 (240)
++.++..++...+..++.++ ++. |.|.+- |+|+.. ...+++.|..++.||.+.+
T Consensus 26 l~~~~~~~l~~al~~~~~d~---~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 102 (258)
T PRK09076 26 WTADSLQALKQLVLELNADK---DVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAI 102 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 77788888888887776533 333 333333 344432 1225566778899999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|.|.+.|.-|+++||- |++.++++|-+-...-|
T Consensus 103 ~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 136 (258)
T PRK09076 103 NGYAMGGGLECALACDI--RIAEEQAQMALPEASVG 136 (258)
T ss_pred CCEEecHHHHHHHhCCE--EEecCCCEeeCcccccC
Confidence 99999999999999997 99999999887554433
No 70
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=95.35 E-value=0.15 Score=45.47 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=61.1
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEe------CCCccHhHH------------------HHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYSV------------------LAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN------SPGGsV~aG------------------laIyd~L~~~~~~V~Tv 169 (240)
+|.++..++.+.|..++.++ .+ .|.|. |.|+|+.+- ..+++.|..++.||.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 99 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-AR--ALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA 99 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cE--EEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67788888888888776532 22 22232 334444210 11345677889999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
+.|.|.+.|.-|++++|- |++.++++|.+-...
T Consensus 100 v~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~ 132 (256)
T TIGR02280 100 VNGVAAGAGANLALACDI--VLAAESARFIQAFAK 132 (256)
T ss_pred ECCeeehHHHHHHHhCCE--EEecCCCEEeChhhh
Confidence 999999999999999997 999999988764433
No 71
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=95.33 E-value=0.15 Score=45.71 Aligned_cols=88 Identities=20% Similarity=0.183 Sum_probs=63.2
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceE-EEeC-------CCccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILM-YLNC-------PGGSIYS----------------VLAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INS-------PGGsV~a----------------GlaIyd~L~~~~~~V~Tv 169 (240)
+|.++..++.+.+..++.++ ++.+ .|-+ .|+|+.. ...+++.|..++.||.+.
T Consensus 27 l~~~~~~el~~~l~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 103 (259)
T TIGR01929 27 FRPLTVKEIIQALDDAREDP---DIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAM 103 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67777788888777776422 3332 2333 3444421 123556778888999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+.|.|.+.|.-|.++||- |++.++++|.+-...-|
T Consensus 104 v~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 138 (259)
T TIGR01929 104 VNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVG 138 (259)
T ss_pred EcCEEehHHHHHHHhCCE--EEecCCCEecCcccccc
Confidence 999999999999999997 99999999988665544
No 72
>PLN02921 naphthoate synthase
Probab=95.32 E-value=0.17 Score=47.49 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=66.2
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-e-------CCCccHhHH----------------HHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-N-------CPGGSIYSV----------------LAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N-------SPGGsV~aG----------------laIyd~L~~~~~~V~Tv 169 (240)
+|.++..++.+.|..++.+ .+|.+.| - |.||++... ..++..|+.++.||.+.
T Consensus 91 l~~~~~~eL~~al~~~~~d---~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 167 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDD---SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAM 167 (327)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 7888888888888877653 3344433 2 345655320 12455677888999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+.|.|.+.|..|.++||- |++.++++|.+..+..|
T Consensus 168 VnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~G 202 (327)
T PLN02921 168 VAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVG 202 (327)
T ss_pred ECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence 999999999999999997 99999999988777655
No 73
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=95.29 E-value=0.1 Score=46.41 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=64.1
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH------------HHHHHHHhhcCCCeEEEEccee
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV------------LAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG------------laIyd~L~~~~~~V~Tvv~G~A 174 (240)
+|.++..++.+.|..++..+ ++. |.|- |.|+++.+- ..++..|..++.||.+.+.|.|
T Consensus 29 l~~~~~~~L~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDP---RYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHA 105 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCce
Confidence 67777888888877776432 332 2333 345654321 2467778889999999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
...|..|.++||- |++.++++|-+....-|
T Consensus 106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G 135 (249)
T PRK07110 106 IGGGLVLGLYADI--VVLSRESVYTANFMKYG 135 (249)
T ss_pred echHHHHHHhCCE--EEEeCCCEecCchhccC
Confidence 9999999999997 99999998876554433
No 74
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=95.22 E-value=0.2 Score=44.81 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=61.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH---------------HHHHHHHHhhcCCCeEEEEc
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS---------------VLAIYDCMSWIKPKVGTVCF 171 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a---------------GlaIyd~L~~~~~~V~Tvv~ 171 (240)
+|.++..++.+.|..++ + ++. |.|- |.|+|+.. ...+++.|..++.||.+.+.
T Consensus 26 l~~~~~~~l~~al~~~~--~---~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 100 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--E---GVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH 100 (255)
T ss_pred CCHHHHHHHHHHHHHhh--c---CCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67777788888777665 2 222 2222 33455432 12356667788999999999
Q ss_pred ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.|.+.|.-|.++||- |++.++++|.+-....|
T Consensus 101 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 133 (255)
T PRK08150 101 GAVVGGGLELASAAHI--RVADESTYFALPEGQRG 133 (255)
T ss_pred CEEEcHHHHHHHhCCE--EEEeCCCEEeccccccC
Confidence 9999999999999997 99999998877554434
No 75
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=95.16 E-value=0.18 Score=48.87 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=66.7
Q ss_pred cEEEEccc-----cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhHH------------H----HHH-
Q 026362 106 RIIFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYSV------------L----AIY- 156 (240)
Q Consensus 106 RIIfl~g~-----Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~aG------------l----aIy- 156 (240)
++|.|+-| ++.++...+...|..++.++ ++.+.| . |-|||+.+. . ..|
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~---~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~ 129 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENP---DIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYK 129 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHH
Confidence 35666665 88899999999998887543 344333 3 346766421 1 122
Q ss_pred --HHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 157 --DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 157 --d~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
..|..++.||.+.+.|.|.+.|.-|.++|+- |++.++++|-+-...-|
T Consensus 130 l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iG 179 (407)
T PLN02851 130 FVYLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMG 179 (407)
T ss_pred HHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccC
Confidence 2345678999999999999999999999986 78877777766444433
No 76
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=95.14 E-value=0.2 Score=44.77 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=63.1
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhH------------------HHHHHHHHhhcCCCeEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYS------------------VLAIYDCMSWIKPKVGT 168 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~a------------------GlaIyd~L~~~~~~V~T 168 (240)
+|.++..++...|..++.++ ++. |.|.+. |+|+.. ...++..|...+.||.+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK05995 28 FNETVIAELTAAFRALDADD---SVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIA 104 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEE
Confidence 67778888888887776432 333 333333 444421 01245567778899999
Q ss_pred EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.|.|.+.|.-|+++||- |++.++++|.+-....|
T Consensus 105 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 140 (262)
T PRK05995 105 RVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLG 140 (262)
T ss_pred EECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccc
Confidence 9999999999999999997 99999999887555544
No 77
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=95.11 E-value=0.18 Score=44.95 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=61.0
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceE-EEeCC-------CccHhHH-------------------HHHHHHHhhcCCCe
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILM-YLNCP-------GGSIYSV-------------------LAIYDCMSWIKPKV 166 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INSP-------GGsV~aG-------------------laIyd~L~~~~~~V 166 (240)
+|.++..++.+.|..++.++ ++.+ .|-+. |+|+..- ..+++.|..++.||
T Consensus 27 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 103 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDE---SVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPV 103 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCE
Confidence 67788888888887776533 2332 22332 3443210 12455677788999
Q ss_pred EEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 167 GTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 167 ~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
.+.+.|.|.+.|.-|+++||- |++.++++|.+-...
T Consensus 104 Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~ 139 (260)
T PRK05980 104 IAAVNGLAFGGGCEITEAVHL--AIASERALFAKPEIR 139 (260)
T ss_pred EEEEcCEEEhhhhHHhHhCCE--EEecCCCEecCcccc
Confidence 999999999999999999997 999999988774443
No 78
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=95.10 E-value=0.15 Score=45.28 Aligned_cols=86 Identities=9% Similarity=0.079 Sum_probs=61.7
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-EeC------CCccHhHH---------------HHHHHHHhhcCCCeEEEEc
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LNC------PGGSIYSV---------------LAIYDCMSWIKPKVGTVCF 171 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-INS------PGGsV~aG---------------laIyd~L~~~~~~V~Tvv~ 171 (240)
+|.++..++...|..++.+ +++.+. |.+ .|+|+... ...+..|..++.||.+.+.
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 103 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEAD---PDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN 103 (249)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6778888888888777653 234433 333 34554321 1234456678899999999
Q ss_pred ceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
|.|.+.|.-+.++||- |++.++++|.+....
T Consensus 104 G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~ 134 (249)
T PRK05870 104 GAAVGAGLNLALAADV--RIAGPKALFDARFQK 134 (249)
T ss_pred CEeEchhHHHHHhCCE--EEEcCCCEEeCcccc
Confidence 9999999999999997 999999998765543
No 79
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=95.09 E-value=0.14 Score=45.98 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=63.4
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhH--------------------------HHHHHHHHh
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYS--------------------------VLAIYDCMS 160 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~a--------------------------GlaIyd~L~ 160 (240)
+|.++...+.+.|..++.+ ++|. |.|.+. |+|+.. ...+++.|.
T Consensus 30 l~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 106 (272)
T PRK06142 30 MNPAFWSELPEIFRWLDAD---PEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVA 106 (272)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 7888888888888777643 2343 233333 344432 123456677
Q ss_pred hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 161 WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 161 ~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.++.||.+.+.|.|.+.|.-|+++||- |++.++++|-+....-|
T Consensus 107 ~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 150 (272)
T PRK06142 107 DCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLG 150 (272)
T ss_pred hCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhC
Confidence 889999999999999999999999997 99999998877655544
No 80
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=95.08 E-value=0.21 Score=44.53 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=60.4
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhH-------------------HHHHHHHHhhcCCCeE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYS-------------------VLAIYDCMSWIKPKVG 167 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~a-------------------GlaIyd~L~~~~~~V~ 167 (240)
+|.++...+.+.|..++..+ ++. |.|.+. |+|+.. ...+++.|..++.||.
T Consensus 26 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 102 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDP---SVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVI 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 67777788888877776432 332 333443 344431 1234456778899999
Q ss_pred EEEcceechHHHHHHcCCCCCcEEeccCceEeeec
Q 026362 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202 (240)
Q Consensus 168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHq 202 (240)
+.+.|.|...|.-|++++|- |++.++++|.+-.
T Consensus 103 aav~G~a~GgG~~lala~D~--ria~~~a~f~~pe 135 (255)
T PRK07260 103 MCVDGAVAGAAANMAVAADF--CIASTKTKFIQAF 135 (255)
T ss_pred EEecCeeehhhHHHHHhCCE--EEEeCCCEEechH
Confidence 99999999999999999997 9999999887633
No 81
>PLN02888 enoyl-CoA hydratase
Probab=95.07 E-value=0.23 Score=44.70 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=62.3
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH------------HHHHHHHhhcCCCeEEEEccee
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV------------LAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG------------laIyd~L~~~~~~V~Tvv~G~A 174 (240)
+|.++...+.+.|..++.++ ++. |.|.+. |+|+... ..++..|..++.||.+.+.|.|
T Consensus 34 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a 110 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDD---SVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFA 110 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCee
Confidence 77788888888888776532 333 333333 4555321 2345567788899999999999
Q ss_pred chHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 175 ASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 175 aS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
.+.|..|+++||- |++.++++|.+-...
T Consensus 111 ~GgG~~lal~cD~--ria~~~a~f~~pe~~ 138 (265)
T PLN02888 111 ITAGFEIALACDI--LVASRGAKFIDTHAK 138 (265)
T ss_pred echHHHHHHhCCE--EEecCCCEecCcccc
Confidence 9999999999997 999999988774433
No 82
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=95.07 E-value=0.097 Score=47.58 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=61.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEe--------CCCccHhHH-----------------HHHHHHHhhcCCCeEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLN--------CPGGSIYSV-----------------LAIYDCMSWIKPKVGT 168 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN--------SPGGsV~aG-----------------laIyd~L~~~~~~V~T 168 (240)
+|.++..++.+.|..++.++..+ + |.|- |.|+|+..- ..+++.|..++.+|.+
T Consensus 35 l~~~~~~eL~~al~~~~~d~~vr-~-vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 35 MTLAMWRSLDDALTALENDPTVR-G-VVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCHHHHHHHHHHHHHHHcCCCce-E-EEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 67788888888888777533222 2 2222 333443321 1144567778899999
Q ss_pred EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.|.|...|.-|+++||- |++.++++|-+-....|
T Consensus 113 aV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lG 148 (278)
T PLN03214 113 AIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALG 148 (278)
T ss_pred EEcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhC
Confidence 9999999999999999997 99999998877544433
No 83
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=95.05 E-value=0.22 Score=44.83 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=60.6
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-EeC------CCccHhHH-----------------HHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LNC------PGGSIYSV-----------------LAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-INS------PGGsV~aG-----------------laIyd~L~~~~~~V~Tv 169 (240)
++.++...+.+.|..++.++ ++.+. |.+ .|+++... ..++..|..++.||.+.
T Consensus 36 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 112 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDP---DVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA 112 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCC---CceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 67888888888888776533 34333 333 34444311 12344566778999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
+.|.|.+.|.-|.++||- |++.++++|-+-...
T Consensus 113 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 145 (268)
T PRK07327 113 IHGPAVGAGLVAALLADI--SIAAKDARIIDGHTR 145 (268)
T ss_pred EcCeeeehhhHHHHhCCE--EEecCCCEEeCcccc
Confidence 999999999999999996 999999988764333
No 84
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=95.01 E-value=0.26 Score=43.97 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=63.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHH----------------HHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSV----------------LAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aG----------------laIyd~L~~~~~~V~Tvv 170 (240)
++.++..++.+.|..++.++ ++. |.|. |-|+|+..- ..+++.|..++.||.+.+
T Consensus 25 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 101 (249)
T PRK07938 25 LPSAGWFALADAITAAGADP---DTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAV 101 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCC---CeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 77777888888877776433 232 2233 334665421 124556778889999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 207 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~ 207 (240)
.|.|.+.|.-|+++||- |++.++++|-+-...-|.
T Consensus 102 ~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~ 136 (249)
T PRK07938 102 HGFCLGGGIGLVGNADV--IVASDDATFGLPEVDRGA 136 (249)
T ss_pred cCEEeehHHHHHHhCCE--EEEeCCCEeeCccceecC
Confidence 99999999999999997 999999988775544443
No 85
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=94.98 E-value=0.26 Score=43.84 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=61.6
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeC------CCccHhHH---------------HH-HHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNC------PGGSIYSV---------------LA-IYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INS------PGGsV~aG---------------la-Iyd~L~~~~~~V~Tvv 170 (240)
+|.++.+++.+.|..++.+ .++. |.|-+ -|+|+... .. ++..|+.++.||.+.+
T Consensus 23 l~~~~~~~l~~~l~~~~~d---~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 99 (255)
T PRK06563 23 FDSAMLDDLALALGEYEAD---DELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAV 99 (255)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEE
Confidence 6777788888887777642 2343 33333 34554310 11 1224667889999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|.|.+.|..++++||- |++.++++|-+....-|
T Consensus 100 ~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G 133 (255)
T PRK06563 100 QGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRG 133 (255)
T ss_pred cCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcC
Confidence 99999999999999997 99999999888665544
No 86
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=94.95 E-value=0.18 Score=45.16 Aligned_cols=50 Identities=18% Similarity=0.042 Sum_probs=42.4
Q ss_pred HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+++.|..++.||.+.+.|.|...|.-|+++||- |++.++++|.+....-|
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 144 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLG 144 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccC
Confidence 455677888999999999999999999999997 99999999887555444
No 87
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=94.90 E-value=0.28 Score=43.78 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=60.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhHH-------------------HHHHHHHhhcCCCeE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYSV-------------------LAIYDCMSWIKPKVG 167 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~aG-------------------laIyd~L~~~~~~V~ 167 (240)
+|.++..++.+.+..++ ++. +.+.| - |.|+|+... ..++..|..++.||.
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~---v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 103 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDG---ARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVI 103 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCC---ceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 67788888888887776 332 33222 2 334554321 114556778899999
Q ss_pred EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
+.+.|.|...|.-|+++||- |++.++++|.+-...
T Consensus 104 aav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 138 (262)
T PRK08140 104 AAVNGVAAGAGANLALACDI--VLAARSASFIQAFVK 138 (262)
T ss_pred EEECCeeehhHHHHHHhCCE--EEecCCCEEeccccc
Confidence 99999999999999999997 999999998764433
No 88
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=94.73 E-value=0.29 Score=43.70 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=64.0
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCCC-------ccHhH---------------HHHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCPG-------GSIYS---------------VLAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSPG-------GsV~a---------------GlaIyd~L~~~~~~V~Tvv 170 (240)
+|.++...+.+.+..++.++ ++. |.|.+.| +|+.. ...+++.|..++.||.+.+
T Consensus 28 l~~~~~~~l~~al~~~~~d~---~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK07657 28 LSLALLEELQNILTQINEEA---NVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 78888888888888776532 333 3334433 33321 1235566778889999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|.|...|.-|.++||- |++.++++|.+-...-|
T Consensus 105 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G 138 (260)
T PRK07657 105 NGIALGGGLELALACDF--RIAAESASLGLTETTLA 138 (260)
T ss_pred cCEeechHHHHHHhCCE--EEeeCCCEEcCchhccC
Confidence 99999999999999997 99999998887655544
No 89
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=94.73 E-value=0.35 Score=43.15 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=61.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-e------CCCccHhH-----------------HHHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-N------CPGGSIYS-----------------VLAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N------SPGGsV~a-----------------GlaIyd~L~~~~~~V~Tv 169 (240)
++.++..++.+.|..++ + ++.+.| - |.|+++.. ...++..|...+.||.+.
T Consensus 28 l~~~~~~~L~~~l~~~~--~---~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 102 (255)
T PRK07112 28 INDRLIAECMDVLDRCE--H---AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAH 102 (255)
T ss_pred CCHHHHHHHHHHHHHhh--c---CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEE
Confidence 67777777777777665 1 233332 2 34444431 012445567778999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 207 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~ 207 (240)
+.|.|...|..|+++||- |++.++++|-+....-|.
T Consensus 103 v~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl 138 (255)
T PRK07112 103 VRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFGL 138 (255)
T ss_pred EecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhcc
Confidence 999999999999999997 999999999886655443
No 90
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=94.73 E-value=0.3 Score=44.14 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=63.2
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-Ee-------CCCccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LN-------CPGGSIYS----------------VLAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN-------SPGGsV~a----------------GlaIyd~L~~~~~~V~Tv 169 (240)
+|.++..++.+.|..++.++ ++.+. |- |.|+|+.. ...+++.|..++.||.+.
T Consensus 37 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 113 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDD---NIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAM 113 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 67788888888887776433 23322 22 23444321 012455677888999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+.|.|...|.-|+++||- |++.++++|-+-.+.-|
T Consensus 114 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 148 (273)
T PRK07396 114 VAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVG 148 (273)
T ss_pred ECCEEehHHHHHHHhCCE--EEeeCCcEEeccccccc
Confidence 999999999999999997 99999999888655544
No 91
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=94.69 E-value=0.29 Score=44.05 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=61.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhH------------------HHHHHHHHhhcCCCeEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYS------------------VLAIYDCMSWIKPKVGT 168 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~a------------------GlaIyd~L~~~~~~V~T 168 (240)
+|.++...+.+.|..++.+ +++.+. |- |.|+|+.. ...++..|..++.||.+
T Consensus 30 l~~~~~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (265)
T PRK05674 30 FNAQMIRELILALDQVQSD---ASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLA 106 (265)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEE
Confidence 6777777788877777643 233332 22 33455431 01244556678899999
Q ss_pred EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.|.|.+.|.-++++||- |++.++++|.+-...-|
T Consensus 107 aV~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G 142 (265)
T PRK05674 107 VVQGAAFGGALGLISCCDM--AIGADDAQFCLSEVRIG 142 (265)
T ss_pred EEcCEEEechhhHhhhcCE--EEEeCCCEEeCcccccC
Confidence 9999999999999999997 99999998887444433
No 92
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=94.68 E-value=0.32 Score=43.74 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=63.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC-------CccHhH-----------------HHHHHHHHhhcCCCeEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP-------GGSIYS-----------------VLAIYDCMSWIKPKVGT 168 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP-------GGsV~a-----------------GlaIyd~L~~~~~~V~T 168 (240)
+|.++..++.+.|..++.++ ++. |.|.+. |+++.. ...+++.|..++.||.+
T Consensus 35 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 111 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDDD---AIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIA 111 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67788888888887776532 232 223333 344321 01245667788899999
Q ss_pred EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.|.|.+.|.-|+++||- |++.++++|.+.....|
T Consensus 112 av~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~G 147 (269)
T PRK06127 112 CIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLG 147 (269)
T ss_pred EECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhC
Confidence 9999999999999999997 99999999988765544
No 93
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=94.66 E-value=0.3 Score=43.43 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=62.3
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhH----------------HHHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYS----------------VLAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~a----------------GlaIyd~L~~~~~~V~Tvv 170 (240)
+|.++..++.+.+..++..+ ++. |.|. |.|+|+.. ...+++.|..++.||.+.+
T Consensus 25 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav 101 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDD---NVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAI 101 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67788888888877776432 233 2233 33555431 1235667788899999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
.|.|.+.|.-++++||- |++.++++|-+-...
T Consensus 102 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 133 (257)
T PRK07658 102 HGAALGGGLELAMSCHI--RFATESAKLGLPELN 133 (257)
T ss_pred cCeeeeHHHHHHHhCCE--EEecCCCcccCcccc
Confidence 99999999999999996 999999888765543
No 94
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=94.64 E-value=0.34 Score=43.91 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=61.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeC------CCccHhHH-------------------HHHHHHHhhcCCCeE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNC------PGGSIYSV-------------------LAIYDCMSWIKPKVG 167 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INS------PGGsV~aG-------------------laIyd~L~~~~~~V~ 167 (240)
+|.++...+...|..++.++ ++. |.|.+ -|+|+... ..+++.|..++.||.
T Consensus 32 l~~~m~~el~~al~~~~~d~---~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDD---DAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI 108 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 77788888888877776432 333 22333 34554321 124556778889999
Q ss_pred EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
+.+.|.|...|.-|+++||- |++.++++|.+-...
T Consensus 109 Aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~ 143 (275)
T PRK09120 109 AMVNGWCFGGGFSPLVACDL--AIAADEAQFGLSEIN 143 (275)
T ss_pred EEEcCEEechhHHHHHhCCE--EEEeCCcEecCCccc
Confidence 99999999999999999997 999999998874433
No 95
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=94.59 E-value=0.88 Score=43.64 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=63.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHHH-------------------HHHHHHhhcCCCeE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSVL-------------------AIYDCMSWIKPKVG 167 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aGl-------------------aIyd~L~~~~~~V~ 167 (240)
++.++...+.+.|..++..+ +|. |.|- |-|||+.... .....|..++.||.
T Consensus 33 Ls~~m~~~L~~al~~~~~d~---~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvI 109 (381)
T PLN02988 33 LSFHMISRLLQLFLAFEEDP---SVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQV 109 (381)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 78888899999998886533 233 3333 3366664311 12235667889999
Q ss_pred EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+.+.|.|.+.|.-|.++|+- |++.++++|-+-...-|
T Consensus 110 a~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iG 146 (381)
T PLN02988 110 SILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALG 146 (381)
T ss_pred EEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcC
Confidence 99999999999999999996 99999988876554444
No 96
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=94.59 E-value=0.28 Score=46.08 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=60.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceE-EEeCCC-------ccHhHH-------------------HHHHHHHhhcCCCe
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILM-YLNCPG-------GSIYSV-------------------LAIYDCMSWIKPKV 166 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INSPG-------GsV~aG-------------------laIyd~L~~~~~~V 166 (240)
+|.++...+.+.+..++.+ .+|.+ .|.+.| +|+..- ..++..|..++.||
T Consensus 27 l~~~m~~~L~~~l~~~~~d---~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 103 (342)
T PRK05617 27 LSLEMIRAIDAALDAWEDD---DAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPY 103 (342)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 6777788888887777642 33433 333333 443210 12345677888999
Q ss_pred EEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 167 GTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 167 ~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
.+.+.|.|.+.|.-|.++||- |++.++++|.+-...
T Consensus 104 IAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~ 139 (342)
T PRK05617 104 IALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETG 139 (342)
T ss_pred EEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccc
Confidence 999999999999999999996 999999988875443
No 97
>PRK08139 enoyl-CoA hydratase; Validated
Probab=94.58 E-value=0.41 Score=43.08 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=63.7
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-eCC------CccHhHH----------------HHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-NCP------GGSIYSV----------------LAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSP------GGsV~aG----------------laIyd~L~~~~~~V~Tvv 170 (240)
+|.++..++.+.|..++.. +++.+.| .+. |+|+... ..+++.|..++.||.+.+
T Consensus 35 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (266)
T PRK08139 35 LSEAMLAALQAALDAIAAD---PSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARV 111 (266)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6778888888887777642 2343333 333 4444210 124556778889999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 207 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~ 207 (240)
.|.|...|.-|+++||- |++.++++|-+-....|.
T Consensus 112 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl 146 (266)
T PRK08139 112 HGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGL 146 (266)
T ss_pred CceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCC
Confidence 99999999999999997 999999998776655453
No 98
>PRK08321 naphthoate synthase; Validated
Probab=94.55 E-value=0.41 Score=44.06 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=62.2
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-----------EeCCCccHhH-----------------------HH---HHH
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-----------LNCPGGSIYS-----------------------VL---AIY 156 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-----------INSPGGsV~a-----------------------Gl---aIy 156 (240)
+|.++..++...|..++.++..+-|.|. .=|.|+|+.. .. .++
T Consensus 49 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (302)
T PRK08321 49 FRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQ 128 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 7788888888888877653322222221 1255666532 01 234
Q ss_pred HHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEec-cCceEeeecCC
Q 026362 157 DCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAM-PNARIMLNQPQ 204 (240)
Q Consensus 157 d~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~-PnA~iMIHqP~ 204 (240)
+.|..++.||.+.+.|.|...|.-|+++||- |++. ++++|.+-...
T Consensus 129 ~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~ 175 (302)
T PRK08321 129 RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDAD 175 (302)
T ss_pred HHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccc
Confidence 5577788999999999999999999999997 9998 68998775444
No 99
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=94.53 E-value=0.32 Score=44.57 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=39.7
Q ss_pred HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeec
Q 026362 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202 (240)
Q Consensus 155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHq 202 (240)
++..|..++.||.+.+.|.|.+.|.-|+++||- |++.++++|-+-.
T Consensus 119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe 164 (302)
T PRK08272 119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPP 164 (302)
T ss_pred HHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcc
Confidence 455677888999999999999999999999997 9999999886533
No 100
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=94.52 E-value=0.19 Score=45.99 Aligned_cols=51 Identities=8% Similarity=-0.113 Sum_probs=42.6
Q ss_pred HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 207 (240)
Q Consensus 155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~ 207 (240)
++..|+.++.||.+.+.|.|.+.|.-|+++||- |++.++++|.+-....|.
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl 160 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGI 160 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCc
Confidence 334567888999999999999999999999997 999999998875555444
No 101
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=94.45 E-value=0.43 Score=42.68 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=60.0
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceE-EEeCC-------CccHhHHH----------HH--HHHHhhcCCCeEEEEcce
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILM-YLNCP-------GGSIYSVL----------AI--YDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INSP-------GGsV~aGl----------aI--yd~L~~~~~~V~Tvv~G~ 173 (240)
+|.++..++...|..++.++ ++.+ .|-+. |+|+.... .+ +..+..++.||.+.+.|.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~ 104 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADP---EQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGV 104 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCE
Confidence 67777888888877776533 2332 23332 45543210 11 122335678999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.+.|.-|.++||- |++.++++|-+....-|
T Consensus 105 a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 135 (259)
T PRK06494 105 AMGGGFELALACDL--IVAAENATFALPEPRVG 135 (259)
T ss_pred EecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence 99999999999997 99999999888665544
No 102
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=94.35 E-value=0.52 Score=41.87 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=60.1
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhH-----------------HHHHHHHHhhcCCCeEEEEc
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYS-----------------VLAIYDCMSWIKPKVGTVCF 171 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~a-----------------GlaIyd~L~~~~~~V~Tvv~ 171 (240)
++.+....+...+..++.++....+.|.-. |.|+|+.. ...+++.|..++.||.+.+.
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~ 102 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT 102 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 777888888888877765322111222212 33455421 01144557778899999999
Q ss_pred ceechHHHHHHcCCCCCcEEecc-CceEeeecCCCC
Q 026362 172 GVAASQAAIILAGGEKGMRYAMP-NARIMLNQPQSG 206 (240)
Q Consensus 172 G~AaS~aslIl~aG~kgkR~a~P-nA~iMIHqP~~g 206 (240)
|.|...|..|++++|- |++.+ .++|.+-.-..|
T Consensus 103 G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~G 136 (239)
T PLN02267 103 GHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIG 136 (239)
T ss_pred CcchHHHHHHHHHCCE--EEecCCCCeEeccccccC
Confidence 9999999999999996 89874 567766444433
No 103
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=94.31 E-value=0.31 Score=43.74 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=60.1
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-EeC-------CCccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LNC-------PGGSIYS----------------VLAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-INS-------PGGsV~a----------------GlaIyd~L~~~~~~V~Tv 169 (240)
+|.++.+++...|..++.+ +++.+. |.+ .|+|+.. ...+++.|..++.||.+.
T Consensus 32 l~~~~~~~l~~~l~~~~~d---~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 108 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAAD---PSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAA 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6777788888887777643 233333 333 2444421 112445667888999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCceEeeec
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHq 202 (240)
+.|.|.+.|.-+++++|- |++.++++|-+-.
T Consensus 109 v~G~a~GgG~~lala~D~--~ia~~~a~f~~pe 139 (262)
T PRK06144 109 IAGACVGGGAAIAAACDL--RIATPSARFGFPI 139 (262)
T ss_pred ECCeeeehHHHHHHhCCE--EEecCCCEeechh
Confidence 999999999999999997 9999999987643
No 104
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=94.14 E-value=0.45 Score=42.49 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=60.0
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCCC------ccHhH------------------HHHHHHHHhhcCCCeEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCPG------GSIYS------------------VLAIYDCMSWIKPKVGT 168 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSPG------GsV~a------------------GlaIyd~L~~~~~~V~T 168 (240)
+|.++..++...|..++.+ +++. |.|.+.| +|+.. ...+++.|..++.||.+
T Consensus 30 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAAD---PAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 6777778888877766642 2333 3334444 33321 11245556777899999
Q ss_pred EEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
.+.|.|.+.|.-|+++||- |++.++++|-+-...
T Consensus 107 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 140 (260)
T PRK07827 107 AIDGHVRAGGFGLVGACDI--VVAGPESTFALTEAR 140 (260)
T ss_pred EEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccc
Confidence 9999999999999999996 999999888774443
No 105
>PRK08788 enoyl-CoA hydratase; Validated
Probab=94.07 E-value=0.71 Score=42.52 Aligned_cols=91 Identities=12% Similarity=-0.014 Sum_probs=60.0
Q ss_pred cChhHHHHHHHHHHhhhcc--CCCCCce-EEEeC-------CCccHhHH----------------HHHHHHHh------h
Q 026362 114 INSMVAQRAISQLVTLATI--DEDADIL-MYLNC-------PGGSIYSV----------------LAIYDCMS------W 161 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~--d~~~~I~-l~INS-------PGGsV~aG----------------laIyd~L~------~ 161 (240)
+|.++..++.+.+..++.. +.+.+|. |.|-+ .|+|+... ..+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 6777788888888877650 0122343 33333 34444321 12344333 4
Q ss_pred cCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 162 IKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 162 ~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.||.+.+.|.|.+.|.-|.++||- |++.++++|-+-...-|
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lG 162 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFN 162 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhC
Confidence 67899999999999999999999997 99999998776444333
No 106
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=94.00 E-value=0.26 Score=45.27 Aligned_cols=48 Identities=13% Similarity=-0.049 Sum_probs=42.1
Q ss_pred HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
.+..|..++.||.+.+.|.|.+.|.-|.++||- |++.++++|-+-...
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~ 151 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSR 151 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccc
Confidence 345677788999999999999999999999997 999999999886655
No 107
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=93.94 E-value=0.47 Score=45.88 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=63.4
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceE-EEe------CCCccHhHHH----------------H---HHHHHhhcCCCeE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILM-YLN------CPGGSIYSVL----------------A---IYDCMSWIKPKVG 167 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~IN------SPGGsV~aGl----------------a---Iyd~L~~~~~~V~ 167 (240)
+|.++...+...|..++.++ +|.+ .|- |-|||+.+-. . ++..|..++.||.
T Consensus 61 Ls~~m~~~L~~al~~~~~D~---~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvI 137 (401)
T PLN02157 61 LTTHMGYRLQKLYKNWEEDP---NIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHV 137 (401)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 78888888888888776533 3332 233 4567764210 1 2234778889999
Q ss_pred EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+.+.|.|.+.|.-|.++|+- |++.++++|-+-...-|
T Consensus 138 A~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iG 174 (401)
T PLN02157 138 AILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIG 174 (401)
T ss_pred EEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcC
Confidence 99999999999999999996 89988888877554444
No 108
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.91 E-value=0.47 Score=45.47 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=64.8
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-eCC-------CccHhH------------------HHHHHHHHhhcCCCeE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-NCP-------GGSIYS------------------VLAIYDCMSWIKPKVG 167 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSP-------GGsV~a------------------GlaIyd~L~~~~~~V~ 167 (240)
++.++...+...+..++.+ ++|.+.| -+- |+++.+ ...+++.|..++.||.
T Consensus 52 ls~~ml~eL~~al~~~~~D---~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI 128 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSD---RDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI 128 (360)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 7888888899988887653 2344333 222 344321 1235566778899999
Q ss_pred EEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 168 TVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 168 Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+.+.|.|.+.|.-|.++||- |++.++++|-+-.+.-|
T Consensus 129 AAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlG 165 (360)
T TIGR03200 129 CRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHG 165 (360)
T ss_pred EEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccC
Confidence 99999999999999999997 99999999888666644
No 109
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=93.84 E-value=0.46 Score=47.29 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=68.7
Q ss_pred ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCc----------cHhHHHHHHHHHhhcCCCeEEEEcceechHHHH
Q 026362 111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG----------SIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 180 (240)
Q Consensus 111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGG----------sV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~asl 180 (240)
+|.++.+.++....-+. +.... .-||...+||||- -+..+..+++.+.....|..+++.|-+++.|.+
T Consensus 328 ~G~~~~~~~~K~~r~i~-~a~~~-~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIR-FCDAF-NIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 46788887776655444 33323 5689999999995 355666777788888899999999999998776
Q ss_pred HHcC----CCCCcEEeccCceEeeecCCCC
Q 026362 181 ILAG----GEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 181 Il~a----G~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+++ ++ ..++.|++++.+=.|.+.
T Consensus 406 am~~~~~~~d--~~~a~p~a~~~v~~pe~a 433 (512)
T TIGR01117 406 AMCSKHLGAD--QVYAWPTAEIAVMGPAGA 433 (512)
T ss_pred HhccccCCCC--EEEEcCCCeEeecCHHHH
Confidence 6654 44 378889999999888763
No 110
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=93.83 E-value=0.54 Score=42.03 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=60.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhHH----------------HHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYSV----------------LAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~aG----------------laIyd~L~~~~~~V~Tvv 170 (240)
+|.++..++...|..++ |+ ++. |.+.+. |+|+..- ..++..|..++.||.+.+
T Consensus 30 l~~~~~~~l~~~l~~~~--d~--~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav 105 (260)
T PRK07659 30 LDEPMLKELLQALKEVA--ES--SAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI 105 (260)
T ss_pred CCHHHHHHHHHHHHHhc--CC--CeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 77788888888887773 32 333 333433 4554321 113445667789999999
Q ss_pred cceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 171 FGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 171 ~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
.|.|.+.|.-|++++|- |++.++++|-+....
T Consensus 106 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 137 (260)
T PRK07659 106 HGPAAGLGLSIALTADY--VIADISAKLAMNFIG 137 (260)
T ss_pred cCceecHHHHHHHhCCE--EEEcCCCEEcCchhh
Confidence 99999999999999997 999999988776644
No 111
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=93.77 E-value=0.45 Score=42.42 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=60.6
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-eC------CCccHhH-------------HHHHHHHHhhcCCCeEEEEcce
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-NC------PGGSIYS-------------VLAIYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NS------PGGsV~a-------------GlaIyd~L~~~~~~V~Tvv~G~ 173 (240)
+|.++..++.+.+..++.++ ++.+.| -+ -|+|+.. ...+++.|..++.||.+.+.|.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~ 104 (257)
T PRK05862 28 LNDALMDELGAALAAFDADE---GIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGY 104 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 67777788888777776432 333222 22 2444321 1234566778889999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
|...|.-+.++||- |++.++++|-+-...
T Consensus 105 a~GgG~~lalacD~--~ia~~~a~f~~pe~~ 133 (257)
T PRK05862 105 ALGGGCELAMMCDI--IIAADTAKFGQPEIK 133 (257)
T ss_pred EeHHHHHHHHHCCE--EEEeCCCEEeCchhc
Confidence 99999999999997 999988888764443
No 112
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=93.65 E-value=0.38 Score=42.82 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=68.2
Q ss_pred ccChhHHHHHHHHHHhhhccCCCCCceEEEe-----CCCccHhHH----------------HHHHHHHhhcCCCeEEEEc
Q 026362 113 PINSMVAQRAISQLVTLATIDEDADILMYLN-----CPGGSIYSV----------------LAIYDCMSWIKPKVGTVCF 171 (240)
Q Consensus 113 ~Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN-----SPGGsV~aG----------------laIyd~L~~~~~~V~Tvv~ 171 (240)
-+|.++...+.+.|..++..+ .-...|... |-|+|+..- ..++..|+.++.||.+.+.
T Consensus 28 al~~~~~~~l~~al~~~~~d~-~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADP-DVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN 106 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCC-CeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEc
Confidence 478888888999888887642 222222222 224555431 1266788899999999999
Q ss_pred ceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 172 GVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 172 G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
|.|...|.-|+++||- |++.++++|-+....-|
T Consensus 107 G~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iG 139 (257)
T COG1024 107 GYALGGGLELALACDI--RIAAEDAKFGLPEVNLG 139 (257)
T ss_pred ceEeechhhhhhcCCe--EEecCCcEecCcccccc
Confidence 9999999999999997 99999999999877654
No 113
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=93.58 E-value=0.58 Score=38.76 Aligned_cols=39 Identities=23% Similarity=0.170 Sum_probs=30.7
Q ss_pred hhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEee
Q 026362 160 SWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML 200 (240)
Q Consensus 160 ~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMI 200 (240)
+..+.||.+++.|.|+|.+.+|+++|++ .++.|.+.+..
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgs 41 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGS 41 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE-
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEE
Confidence 5667899999999999999999999996 88889888766
No 114
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=93.54 E-value=0.69 Score=41.22 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=59.0
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEe------CCCccHhHHH----------HHHHHH-hhcCCCeEEEEcceec
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLN------CPGGSIYSVL----------AIYDCM-SWIKPKVGTVCFGVAA 175 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~IN------SPGGsV~aGl----------aIyd~L-~~~~~~V~Tvv~G~Aa 175 (240)
+|.++..++.+.|..++.++ +|. |.|. |.|+|+.... .+...+ ..++.||.+.+.|.|.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~ 103 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADP---DLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYAL 103 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEe
Confidence 77888888888888876533 333 2333 3455553210 111111 3567899999999999
Q ss_pred hHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 176 SQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 176 S~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
+.|.-++++||- |++.++++|-+-...
T Consensus 104 GgG~~lalacD~--~ia~~~a~f~~pe~~ 130 (254)
T PRK08252 104 AGGFELALACDL--IVAARDAKFGLPEVK 130 (254)
T ss_pred hHHHHHHHhCCE--EEEeCCCEEeCchhh
Confidence 999999999996 999999988764443
No 115
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=93.22 E-value=0.91 Score=43.31 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=67.0
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhccCCCCCceEEE-eC------CCccHhHH----------H-------HHHH
Q 026362 107 IIFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYL-NC------PGGSIYSV----------L-------AIYD 157 (240)
Q Consensus 107 IIfl~g~-----Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NS------PGGsV~aG----------l-------aIyd 157 (240)
+|.|+.| +|.++...+...|..++.+ .+|.+.| .+ -|||+..- . .+..
T Consensus 23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d---~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (379)
T PLN02874 23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKD---DSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCY 99 (379)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 3455555 7888888888888877653 2344433 33 34554321 0 1123
Q ss_pred HHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 158 CMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 158 ~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|..++.||.+.+.|.|.+.|.-|+++||- |++.++++|.+-...-|
T Consensus 100 ~i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iG 146 (379)
T PLN02874 100 HIHTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVG 146 (379)
T ss_pred HHHhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccC
Confidence 466778999999999999999999999997 99999998887555544
No 116
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=93.18 E-value=0.87 Score=39.87 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=60.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhH--------------HHHHHHHHhhcCCCeEEEEcce
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYS--------------VLAIYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~a--------------GlaIyd~L~~~~~~V~Tvv~G~ 173 (240)
++.++.+++.+.+..++ .+ ..+ |.|... |+|+.. ...++..|...+.||.+.+.|.
T Consensus 26 l~~~~~~~l~~~l~~~~-~~--~~v-vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE-DD--RAV-VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh-cc--CcE-EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 67777888888877665 22 222 333333 344321 2234556677889999999999
Q ss_pred echHHHHHHcCCCCCcEEeccC-ceEeeecCCCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPN-ARIMLNQPQSG 206 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~Pn-A~iMIHqP~~g 206 (240)
|.+.|.-|++++|- |++.++ ++|-+-...-|
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~G 133 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIG 133 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECchhhhC
Confidence 99999999999996 999998 88877544433
No 117
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=93.14 E-value=0.54 Score=43.79 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=69.2
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE----eCCCccHhHH-------------HHHHHHHhhcCCCeEEEEcceech
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL----NCPGGSIYSV-------------LAIYDCMSWIKPKVGTVCFGVAAS 176 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I----NSPGGsV~aG-------------laIyd~L~~~~~~V~Tvv~G~AaS 176 (240)
++..+..++...+..++.++..+-|.|+= =|-|.|+.+. +.-++.+..++.||...+.|+|..
T Consensus 61 l~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Alg 140 (290)
T KOG1680|consen 61 LCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALG 140 (290)
T ss_pred ccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeec
Confidence 77788899999999898765444333321 1224444322 335667777889999999999999
Q ss_pred HHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 177 QAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 177 ~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|.-|.+.||- |++.++|.|++-++..|
T Consensus 141 GG~ELalmCDi--rva~~~Akfg~~~~~~G 168 (290)
T KOG1680|consen 141 GGLELALMCDI--RVAGEGAKFGFFEIRMG 168 (290)
T ss_pred cchhhhhhcce--EeccCCCeecccccccC
Confidence 99999999998 99999999999888765
No 118
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=93.02 E-value=0.91 Score=40.58 Aligned_cols=89 Identities=12% Similarity=0.070 Sum_probs=60.2
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEeCC------CccHhHHH---------------H-H--HHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLNCP------GGSIYSVL---------------A-I--YDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSP------GGsV~aGl---------------a-I--yd~L~~~~~~V~Tv 169 (240)
+|.++...+.+.|..++.++..+ .|.|-+. |+|+..-. . + +..++.++.||.+.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa 106 (263)
T PRK07799 29 LSTEMLRIMVDAWDRVDNDPDIR--SCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAA 106 (263)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEE
Confidence 77788888888888777533221 2333333 45543210 0 1 11134678899999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
+.|.|.+.|.-|++++|- |++.++++|-+.....|
T Consensus 107 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 141 (263)
T PRK07799 107 VEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWS 141 (263)
T ss_pred ECCeEeccHHHHHHhCCE--EEecCCCEecCcccccC
Confidence 999999999999999997 99999998877554444
No 119
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=92.51 E-value=0.31 Score=48.01 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=66.2
Q ss_pred ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHH
Q 026362 111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 180 (240)
Q Consensus 111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~asl 180 (240)
+|.++.+.+.....-+...+. . .=||....|+|| |-+..|-.+.+++...+.|+.|++.|-+.+.|.+
T Consensus 307 ~G~~~~~~a~K~arfi~lcd~-~-~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~ 384 (493)
T PF01039_consen 307 AGALDPDGARKAARFIRLCDA-F-NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYY 384 (493)
T ss_dssp GGEB-HHHHHHHHHHHHHHHH-T-T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHh-h-CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchh
Confidence 367888877655554433433 2 358999999999 4566788999999999999999999999998887
Q ss_pred HHcCCCCC--cEEeccCceEeeecCCCC
Q 026362 181 ILAGGEKG--MRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 181 Il~aG~kg--kR~a~PnA~iMIHqP~~g 206 (240)
.+++..-+ -.++.|+|++-+-.|.+.
T Consensus 385 am~~~~~~~~~~~Awp~a~~~vm~~e~a 412 (493)
T PF01039_consen 385 AMCGRGYGPDFVFAWPTAEIGVMGPEGA 412 (493)
T ss_dssp HTTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred hhcccccchhhhhhhhcceeeecChhhh
Confidence 77766222 378889999999888754
No 120
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=92.20 E-value=0.89 Score=40.63 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=57.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEE-Ee------CCCccHhHHH-------H------HHHHHhhcCCCeEEEEcce
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMY-LN------CPGGSIYSVL-------A------IYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~-IN------SPGGsV~aGl-------a------Iyd~L~~~~~~V~Tvv~G~ 173 (240)
+|.++...+.+.|..++.++ ++.+. |. |.|+|+.... . .+..+..++.||.+.+.|.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~---~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~ 103 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADD---AASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGY 103 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCE
Confidence 67788888888888776532 33322 22 3455554211 0 0111225678999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeec
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQ 202 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHq 202 (240)
|...|.-++++||- |++.++++|-+-.
T Consensus 104 a~GgG~~lalacD~--~ia~~~a~f~~pe 130 (254)
T PRK08259 104 AVAGGLELALWCDL--RVAEEDAVFGVFC 130 (254)
T ss_pred EEhHHHHHHHhCCE--EEecCCCEecCcc
Confidence 99999999999997 9999999887644
No 121
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=91.19 E-value=1.2 Score=44.78 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=57.7
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-e-------CCCccHhHH-------------------HHHHHHHhhcCCCe
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-N-------CPGGSIYSV-------------------LAIYDCMSWIKPKV 166 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N-------SPGGsV~aG-------------------laIyd~L~~~~~~V 166 (240)
++.++...+.+.|..++..+ ++|.+.| - |.|+++... ..+++.|+.++.||
T Consensus 45 l~~~~l~eL~~al~~~~~~d--~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPv 122 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEH--PEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57777788888887776222 2344322 2 345554321 12445667788999
Q ss_pred EEEEcceechHHHHHHcCCCCCcEEeccC--ceEee
Q 026362 167 GTVCFGVAASQAAIILAGGEKGMRYAMPN--ARIML 200 (240)
Q Consensus 167 ~Tvv~G~AaS~aslIl~aG~kgkR~a~Pn--A~iMI 200 (240)
.+.+.|.|.+.|.-|.++||- |++.++ ++|-+
T Consensus 123 IAAVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~ 156 (546)
T TIGR03222 123 LAAVNGTCAGGGYELALACDE--IMLVDDRSSSVSL 156 (546)
T ss_pred EEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence 999999999999999999996 888876 45554
No 122
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.14 E-value=1.5 Score=45.18 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=64.5
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeCC------CccHhH------------------HHHHHHHHhhcCCCeEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNCP------GGSIYS------------------VLAIYDCMSWIKPKVGT 168 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INSP------GGsV~a------------------GlaIyd~L~~~~~~V~T 168 (240)
++.++...+.+.|..++.++ ++. |.|-+. |+|+.+ +..+++.|..++.||.+
T Consensus 31 l~~~~~~eL~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIA 107 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQS---SLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVA 107 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67788888888888776533 233 233333 344421 23467778889999999
Q ss_pred EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.|.|.+.|.-|.++||- |++.++++|-+-...-|
T Consensus 108 ai~G~alGGGleLalacD~--ria~~~a~fglPEv~lG 143 (714)
T TIGR02437 108 AINGIALGGGCECVLATDF--RIADDTAKIGLPETKLG 143 (714)
T ss_pred EECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcC
Confidence 9999999999999999996 99999999887554433
No 123
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=91.02 E-value=0.61 Score=43.81 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=62.8
Q ss_pred CCCceEEEeCCCccHh-------HHHHHHHHHh---hcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 135 DADILMYLNCPGGSIY-------SVLAIYDCMS---WIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 135 ~~~I~l~INSPGGsV~-------aGlaIyd~L~---~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
.-||..+|++||-... .+-+|--.|. ..+.||.+++.|.-.|.|++-+..|++ .+++.|+++.+=.|.
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence 4689999999996542 3455554443 567899999999999999999999996 788899999999998
Q ss_pred CC---CCCCHHHHHHHHH
Q 026362 205 SG---SGGHVEDVKRQVN 219 (240)
Q Consensus 205 ~g---~~G~a~di~~~a~ 219 (240)
+. .|-+++--.+.|+
T Consensus 228 G~AsILWkD~~ka~eAAe 245 (317)
T COG0825 228 GCASILWKDASKAKEAAE 245 (317)
T ss_pred hhhhhhhcChhhhHHHHH
Confidence 65 2555444333333
No 124
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.94 E-value=1.6 Score=44.95 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=60.8
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceE--EEe------CCCccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILM--YLN------CPGGSIYS----------------VLAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l--~IN------SPGGsV~a----------------GlaIyd~L~~~~~~V~Tv 169 (240)
+|.++..++.+.|..++.+ +++.. .+. |-|+|+.. ...++..|..++.||.+.
T Consensus 26 l~~~~~~eL~~~l~~~~~d---~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 102 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRD---KSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAA 102 (699)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6777788888888777643 34442 223 33455432 123567788889999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccC--ceEeeecCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPN--ARIMLNQPQ 204 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~Pn--A~iMIHqP~ 204 (240)
+.|.|.+.|.-|.++||- |++.++ ++|-+....
T Consensus 103 VnG~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~ 137 (699)
T TIGR02440 103 IHGACLGGGLELALACHS--RVCSDDDKTVLGLPEVQ 137 (699)
T ss_pred ECCEeecHHHHHHHhCCE--EEEcCCCCcEEechhhc
Confidence 999999999999999996 888876 455554433
No 125
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=90.94 E-value=1.1 Score=45.09 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=57.8
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-e-------CCCccHhHH--------------H-----HHHHHHhhcCCCe
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-N-------CPGGSIYSV--------------L-----AIYDCMSWIKPKV 166 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-N-------SPGGsV~aG--------------l-----aIyd~L~~~~~~V 166 (240)
++.++...+.+.|..++..+ .+|.+.| - |.|+++..- . .+.+.|+.++.||
T Consensus 49 l~~~m~~eL~~al~~~~~~d--~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPv 126 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEH--PEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKF 126 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 67778888888888776323 2343322 2 344554321 0 1445667788999
Q ss_pred EEEEcceechHHHHHHcCCCCCcEEeccC--ceEee
Q 026362 167 GTVCFGVAASQAAIILAGGEKGMRYAMPN--ARIML 200 (240)
Q Consensus 167 ~Tvv~G~AaS~aslIl~aG~kgkR~a~Pn--A~iMI 200 (240)
.+.+.|.|.+.|..|.++||- |++.++ ++|-+
T Consensus 127 IAAVnG~a~GGG~~LALacD~--rIas~~~~a~fg~ 160 (550)
T PRK08184 127 IAAVNGTCAGGGYELALACDE--IVLVDDRSSAVSL 160 (550)
T ss_pred EEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence 999999999999999999996 898876 66655
No 126
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.38 E-value=1.4 Score=45.38 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=63.0
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce-EEEeC------CCccHhHH------------------HHHHHHHhhcCCCeEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL-MYLNC------PGGSIYSV------------------LAIYDCMSWIKPKVGT 168 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~-l~INS------PGGsV~aG------------------laIyd~L~~~~~~V~T 168 (240)
+|.++...+.+.+..++.++ ++. |.|.+ -|+|+..- ..+++.|..++.||.+
T Consensus 31 l~~~~~~~L~~al~~~~~d~---~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 107 (715)
T PRK11730 31 LDRATLASLGEALDALEAQS---DLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVA 107 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 67788888888887776532 333 33333 34554321 1245567788899999
Q ss_pred EEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 169 VCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.+.|.|...|.-|+++||- |++.++++|-+-...-|
T Consensus 108 av~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lG 143 (715)
T PRK11730 108 AINGYALGGGCECVLATDY--RVASPDARIGLPETKLG 143 (715)
T ss_pred EECCEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcC
Confidence 9999999999999999997 99999998877554433
No 127
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.81 E-value=2.9 Score=43.08 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=62.0
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceE-EEeCC-------CccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILM-YLNCP-------GGSIYS----------------VLAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l-~INSP-------GGsV~a----------------GlaIyd~L~~~~~~V~Tv 169 (240)
+|.++..++...|..++.+ +++.. .|-+. |+|+.. ...+++.|..++.||.+.
T Consensus 31 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 107 (708)
T PRK11154 31 LKAEFAEQVRAILKQLRED---KELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA 107 (708)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6777778888887777652 34543 33332 344421 123567788899999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCc--eEeeecCCCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNA--RIMLNQPQSG 206 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA--~iMIHqP~~g 206 (240)
+.|.|.+.|.-|.++||- |++.+++ +|-+....-|
T Consensus 108 V~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lG 144 (708)
T PRK11154 108 IHGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLG 144 (708)
T ss_pred ECCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCC
Confidence 999999999999999996 9999875 6665554433
No 128
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=89.09 E-value=10 Score=38.51 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=64.1
Q ss_pred cccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCcc----------HhHHHHHHHHHhhcCCCeEEEEcceechHHHHH
Q 026362 112 QPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGS----------IYSVLAIYDCMSWIKPKVGTVCFGVAASQAAII 181 (240)
Q Consensus 112 g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGs----------V~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslI 181 (240)
|.++.+.+.... +++.|-... .=||...+|+||-. +..+-.+.+++.....|..|++.|-|.+.|.+.
T Consensus 380 g~l~~~~a~Kaa-rfi~lc~~~-~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGA-HFIELCAQR-GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHH-HHHHHHHhc-CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 447776655443 344343322 45889999999944 445666777777888999999999999999988
Q ss_pred HcCC--CCCcEEeccCceEeeecCCC
Q 026362 182 LAGG--EKGMRYAMPNARIMLNQPQS 205 (240)
Q Consensus 182 l~aG--~kgkR~a~PnA~iMIHqP~~ 205 (240)
+++. ...-.++.|+|++-+=.|.+
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e~ 483 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGAQ 483 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHHH
Confidence 8754 22236677888887765553
No 129
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=88.65 E-value=3.3 Score=38.27 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=66.0
Q ss_pred EEccccChhHHHHHHHHHHhhhcc----CCCCCceEEEeCCCccHhHHHH-------HHHHHhhcC--CCeEEEEcce--
Q 026362 109 FIGQPINSMVAQRAISQLVTLATI----DEDADILMYLNCPGGSIYSVLA-------IYDCMSWIK--PKVGTVCFGV-- 173 (240)
Q Consensus 109 fl~g~Id~~~a~~~iaqLl~L~~~----d~~~~I~l~INSPGGsV~aGla-------Iyd~L~~~~--~~V~Tvv~G~-- 173 (240)
|.+|-+.+.....+...+. +..+ ...-++.+.+.|.|+.+.++.. |+..+...+ .|+.+++.|-
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~g 148 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALR-LAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVG 148 (274)
T ss_pred ccCcCCCHHHHHHHHHHHH-HHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 5678888877776666544 4433 1124799999999998876442 333333333 6999999999
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
|++.++++.+.++- .++.|++++.+--|.
T Consensus 149 c~GG~a~~a~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 149 CFGGMGIAAGLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred cchHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence 78888888888886 778899999887664
No 130
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=87.56 E-value=3.1 Score=39.04 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=67.2
Q ss_pred EEccccChhHHHHHHHHHHhhhccCC----CCCceEEEeCCCccHhHHH-------HHHHHHhhcC--CCeEEEEcce--
Q 026362 109 FIGQPINSMVAQRAISQLVTLATIDE----DADILMYLNCPGGSIYSVL-------AIYDCMSWIK--PKVGTVCFGV-- 173 (240)
Q Consensus 109 fl~g~Id~~~a~~~iaqLl~L~~~d~----~~~I~l~INSPGGsV~aGl-------aIyd~L~~~~--~~V~Tvv~G~-- 173 (240)
|.+|-+.+.....+...+. +..+.. --++.+++.|.|+.+.++. .|+..+...+ .|+.+++.|-
T Consensus 79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g 157 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG 157 (301)
T ss_pred ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 5688888877777766544 443332 1588999999998876543 2343433333 6999999998
Q ss_pred echHHHHHHcCCCCCcEEeccCceEeeecCC
Q 026362 174 AASQAAIILAGGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 174 AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~ 204 (240)
|+..++++.+.+|- .++.+++++.+--|.
T Consensus 158 c~GG~a~~a~l~D~--iIm~~~a~iglaGP~ 186 (301)
T PRK07189 158 CFGGMGIAAALCSY--LIVSEEGRLGLSGPE 186 (301)
T ss_pred CcHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence 88888888888886 778899999887664
No 131
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.74 E-value=4 Score=42.40 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=61.9
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCce--EEEeCC------CccHhH----------------HHHHHHHHhhcCCCeEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADIL--MYLNCP------GGSIYS----------------VLAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~--l~INSP------GGsV~a----------------GlaIyd~L~~~~~~V~Tv 169 (240)
++.++...+.+.|..++. +.++. |.+... |+|+.. ...+++.|..++.||...
T Consensus 38 l~~~~~~~L~~al~~~~~---d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 114 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWT---NEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA 114 (737)
T ss_pred CCHHHHHHHHHHHHHHhh---CCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 667777888888877764 23454 334443 344431 224677788899999999
Q ss_pred EcceechHHHHHHcCCCCCcEEeccCc--eEeeecCC
Q 026362 170 CFGVAASQAAIILAGGEKGMRYAMPNA--RIMLNQPQ 204 (240)
Q Consensus 170 v~G~AaS~aslIl~aG~kgkR~a~PnA--~iMIHqP~ 204 (240)
+.|.|.+.|.-|.++||- |++.+++ +|-+....
T Consensus 115 v~G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~ 149 (737)
T TIGR02441 115 ISGSCLGGGLELALACHY--RIATKDRKTLLGLPEVM 149 (737)
T ss_pred ECCEeecHHHHHHHhCCE--EEEcCCCCCeEecchhh
Confidence 999999999999999997 9999875 56554443
No 132
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=85.08 E-value=5.9 Score=36.80 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=66.2
Q ss_pred EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHH-------H---HhhcCCCeEEEEcceechHH
Q 026362 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYD-------C---MSWIKPKVGTVCFGVAASQA 178 (240)
Q Consensus 109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd-------~---L~~~~~~V~Tvv~G~AaS~a 178 (240)
|.+|-++...++.+...+..- .+. .-|+.++.+|+|.-+.+|...+. . +.....|..+++.|-+...+
T Consensus 131 f~gGSmg~~~geKi~r~~e~A-~~~-~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~ 208 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKA-LED-NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV 208 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHH-HHc-CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence 567888888888777655533 333 45888999999988777653321 2 22335789999999998887
Q ss_pred HHHHc-CCCCCcEEeccCceEeeecCC
Q 026362 179 AIILA-GGEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 179 slIl~-aG~kgkR~a~PnA~iMIHqP~ 204 (240)
+..++ .|+- .++.|+|++.+--|.
T Consensus 209 aas~a~~~D~--iia~p~A~ig~aGpr 233 (285)
T TIGR00515 209 SASFAMLGDL--NIAEPKALIGFAGPR 233 (285)
T ss_pred HHHHHhCCCE--EEEECCeEEEcCCHH
Confidence 77664 7775 788899999886664
No 133
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=85.07 E-value=15 Score=37.14 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=66.2
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEEeCCC--------ccHh-----------HH----HHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYLNCPG--------GSIY-----------SV----LAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG--------GsV~-----------aG----laIyd~L~~~~~~V~Tvv 170 (240)
++.++...+.+.+..++..| .+|.+.|=+.+ +|+. .. ..+++.|..++.||.+.+
T Consensus 295 l~~~~~~~L~~a~~~~~~~d--~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNE--LDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCC--CCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 67788888888888886433 35665553333 3331 10 125667888899999999
Q ss_pred -cceechHH-HHHHcCCCCCcEEe-------ccCceEeeecCCCCC
Q 026362 171 -FGVAASQA-AIILAGGEKGMRYA-------MPNARIMLNQPQSGS 207 (240)
Q Consensus 171 -~G~AaS~a-slIl~aG~kgkR~a-------~PnA~iMIHqP~~g~ 207 (240)
.|.|...| .-|.++||- |++ .++++|.+-...-|.
T Consensus 373 ~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl 416 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGL 416 (546)
T ss_pred CCCeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCcccccc
Confidence 79999999 999999997 999 799999887766553
No 134
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=84.47 E-value=7.6 Score=36.15 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=65.6
Q ss_pred EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHH-------HHH---HhhcCCCeEEEEcceechHH
Q 026362 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAI-------YDC---MSWIKPKVGTVCFGVAASQA 178 (240)
Q Consensus 109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaI-------yd~---L~~~~~~V~Tvv~G~AaS~a 178 (240)
|.+|-++...++.+..-+. +..+. .-|+..+..|+|....+|... +.. +.....|..+++.|-+...+
T Consensus 132 f~gGS~g~~~~eKi~r~~e-~A~~~-~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVE-RAIEE-KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred cccCCccHHHHHHHHHHHH-HHHHc-CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 5678899988888776554 43333 458888889999887776532 222 22335789999999998887
Q ss_pred HHHHcC-CCCCcEEeccCceEeeecCC
Q 026362 179 AIILAG-GEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 179 slIl~a-G~kgkR~a~PnA~iMIHqP~ 204 (240)
+..++. ++- .++.|+|++.+=-|.
T Consensus 210 aas~a~~~D~--iia~p~A~ig~aGpr 234 (292)
T PRK05654 210 SASFAMLGDI--IIAEPKALIGFAGPR 234 (292)
T ss_pred HHHHHHcCCE--EEEecCcEEEecCHH
Confidence 766554 775 788899988886664
No 135
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=80.11 E-value=13 Score=33.81 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=47.2
Q ss_pred ccCCCCCceEEEeCCCcc---HhHHHH----------HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCce
Q 026362 131 TIDEDADILMYLNCPGGS---IYSVLA----------IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNAR 197 (240)
Q Consensus 131 ~~d~~~~I~l~INSPGGs---V~aGla----------Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~ 197 (240)
...++.+|.+.+.+||-- -.+-+- -|+.-|....||.+.+.|.|.|.|.+- -+-.-.+-+++| -
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA-~GlqA~rl~AL~--g 136 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLA-HGLQANRLIALP--G 136 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHH-HHHHhcchhcCC--C
Confidence 345688999999999933 333333 456666777899999999999987543 222222357888 5
Q ss_pred Eeeec
Q 026362 198 IMLNQ 202 (240)
Q Consensus 198 iMIHq 202 (240)
.|||-
T Consensus 137 a~i~v 141 (234)
T PF06833_consen 137 AMIHV 141 (234)
T ss_pred Ceeec
Confidence 66773
No 136
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=78.98 E-value=5.3 Score=40.26 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=64.3
Q ss_pred ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHH
Q 026362 111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 180 (240)
Q Consensus 111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~asl 180 (240)
+|-|+.+.+.. .++++.|.... +=||....|.|| |-+--|--+.+++-..+.|..|++.|-+...|.+
T Consensus 337 ~G~l~~~sa~K-aArFI~~cd~~-~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~ 414 (526)
T COG4799 337 GGVLDIDSADK-AARFIRLCDAF-NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYY 414 (526)
T ss_pred ccccchHHHHH-HHHHHHhhhcc-CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceee
Confidence 67788876643 23333343322 458899999998 4456788899999999999999999999999888
Q ss_pred HHcCCCCCcEE--eccCceEeeecCC
Q 026362 181 ILAGGEKGMRY--AMPNARIMLNQPQ 204 (240)
Q Consensus 181 Il~aG~kgkR~--a~PnA~iMIHqP~ 204 (240)
.+++..-+.++ +-|+|++-+=.|.
T Consensus 415 ~M~~~~~~~~~~~AwP~a~iaVMG~e 440 (526)
T COG4799 415 VMGGKALGPDFNYAWPTAEIAVMGPE 440 (526)
T ss_pred eecCccCCCceeEecCcceeeecCHH
Confidence 77765543333 3366666654444
No 137
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=75.29 E-value=19 Score=36.41 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=61.7
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-eCC-------CccHh-----------HH----HHHHHHHhhcCCCeEEEE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-NCP-------GGSIY-----------SV----LAIYDCMSWIKPKVGTVC 170 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSP-------GGsV~-----------aG----laIyd~L~~~~~~V~Tvv 170 (240)
++.++...+.+.+..++..| .+|...| -+- |+|+. .. ..++..|...+.||.+.+
T Consensus 299 l~~~~~~eL~~al~~~~~~d--~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNE--LDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56777888888877776422 3455443 222 23421 00 124556777789999999
Q ss_pred c-ceechHH-HHHHcCCCCCcEEec-------cCceEeeecCCCC
Q 026362 171 F-GVAASQA-AIILAGGEKGMRYAM-------PNARIMLNQPQSG 206 (240)
Q Consensus 171 ~-G~AaS~a-slIl~aG~kgkR~a~-------PnA~iMIHqP~~g 206 (240)
. |.|...| .-|.++||- |++. ++++|.+-...-|
T Consensus 377 ~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~G 419 (550)
T PRK08184 377 EPGSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFG 419 (550)
T ss_pred CCCceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECcccccc
Confidence 6 9999999 889999996 9999 9999888666655
No 138
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=71.89 E-value=24 Score=35.86 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=62.4
Q ss_pred EccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHh---H------HH-HHHHH-Hhhc--CCCeEEEEcceech
Q 026362 110 IGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIY---S------VL-AIYDC-MSWI--KPKVGTVCFGVAAS 176 (240)
Q Consensus 110 l~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~---a------Gl-aIyd~-L~~~--~~~V~Tvv~G~AaS 176 (240)
.+|-+++..++.++.-+ .+..+. .-|+..+++|+|+.+. . ++ .|+.. .+.. ..|..+++.|-|++
T Consensus 141 ~GGs~g~~~~~Ki~r~~-elA~~~-~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~g 218 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQ-EIAAQC-RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTA 218 (569)
T ss_pred cCCCCCHHHHHHHHHHH-HHHHHc-CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence 46778887777776644 344444 4689999999998762 1 11 24443 3323 36999999999999
Q ss_pred HHHHHHcCCCCCcEEec-cCceEeeecC
Q 026362 177 QAAIILAGGEKGMRYAM-PNARIMLNQP 203 (240)
Q Consensus 177 ~aslIl~aG~kgkR~a~-PnA~iMIHqP 203 (240)
.++++.+.++. .++. +++++.+--|
T Consensus 219 GgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 219 GGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred HHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 99999887875 4555 5788888666
No 139
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=64.02 E-value=11 Score=32.00 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=29.6
Q ss_pred EEEccccChhHHHHHHHHHHh-hhccCCCCCceEEEeCCCccHhH
Q 026362 108 IFIGQPINSMVAQRAISQLVT-LATIDEDADILMYLNCPGGSIYS 151 (240)
Q Consensus 108 Ifl~g~Id~~~a~~~iaqLl~-L~~~d~~~~I~l~INSPGGsV~a 151 (240)
+-+.|.|+..-++.+..++-. |....+++++.|.+-||||-|..
T Consensus 103 ldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh~ 147 (155)
T PF08496_consen 103 LDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVHG 147 (155)
T ss_pred EecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceeec
Confidence 346788887555544444332 33335668999999999998863
No 140
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=62.97 E-value=37 Score=31.02 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=38.0
Q ss_pred HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeee
Q 026362 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLN 201 (240)
Q Consensus 155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIH 201 (240)
+.+-||+++.||...+.|.|+-+|.-+.+.||- .++..++.|..-
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tP 161 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTP 161 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCC
Confidence 667788999999999999999999999998884 677777777653
No 141
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=60.47 E-value=53 Score=28.09 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHhh--------------------------cCCCeEE
Q 026362 116 SMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW--------------------------IKPKVGT 168 (240)
Q Consensus 116 ~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~~--------------------------~~~~V~T 168 (240)
+...+.+.+.+..++. ..+.+.|=+ |-+||++..+..+.+.+-. ...||..
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~v 149 (224)
T cd06567 72 ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVV 149 (224)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEE
Confidence 4445556665555654 245555555 6689999988888887753 2358999
Q ss_pred EEcceechHHHHHHcCC
Q 026362 169 VCFGVAASQAAIILAGG 185 (240)
Q Consensus 169 vv~G~AaS~aslIl~aG 185 (240)
++.+..+|+|-++..+=
T Consensus 150 L~~~~taSaaE~~a~~l 166 (224)
T cd06567 150 LVNEGSASASEIFAGAL 166 (224)
T ss_pred EECCCCccHHHHHHHHH
Confidence 99999999998876543
No 142
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=60.04 E-value=54 Score=28.60 Aligned_cols=88 Identities=22% Similarity=0.208 Sum_probs=55.6
Q ss_pred CChhhhhccCcEEEEc-cccChhHHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHhh------------
Q 026362 96 LDLSSVLFRNRIIFIG-QPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW------------ 161 (240)
Q Consensus 96 ~dl~~~L~~~RIIfl~-g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~~------------ 161 (240)
.|-|++++.. |-||. ..+++...++|.+.|..+...+ .+.+.|-+ +.+||++..+..|.+.+-.
T Consensus 40 ~~~~~~~~~~-igYi~i~sf~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g 117 (211)
T cd07560 40 LDPYSRYLTP-IGYIRITSFSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNG 117 (211)
T ss_pred CCCcceeeCc-eEEEEEcccCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 3444444444 44432 1244556677777777776543 34455555 5679999988877764431
Q ss_pred ------------cCCCeEEEEcceechHHHHHHcCC
Q 026362 162 ------------IKPKVGTVCFGVAASQAAIILAGG 185 (240)
Q Consensus 162 ------------~~~~V~Tvv~G~AaS~aslIl~aG 185 (240)
...||..++.+..+|+|-++..+=
T Consensus 118 ~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~l 153 (211)
T cd07560 118 KREAYASDDGGLYDGPLVVLVNGGSASASEIVAGAL 153 (211)
T ss_pred ceEEEecCCCccCCCCEEEEeCCCcccHHHHHHHHH
Confidence 345888999999999998875543
No 143
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=58.04 E-value=36 Score=31.56 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=54.7
Q ss_pred EEEEc-cccChhHHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHh------------------------
Q 026362 107 IIFIG-QPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMS------------------------ 160 (240)
Q Consensus 107 IIfl~-g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~------------------------ 160 (240)
|-||. ...+....+++.+.|..|+..+ .+.+.|=+ +.+||++..+..+.+.+-
T Consensus 153 igYi~i~~f~~~~~~~~~~~l~~l~~~~-~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~ 231 (334)
T TIGR00225 153 VGYIRISSFSEHTTEDVKKALDKLEKKN-AKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQ 231 (334)
T ss_pred EEEEEEEecccchHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCc
Confidence 55542 1245556778888887776544 45566666 778999999888888652
Q ss_pred hcCCCeEEEEcceechHHHHHHcCC
Q 026362 161 WIKPKVGTVCFGVAASQAAIILAGG 185 (240)
Q Consensus 161 ~~~~~V~Tvv~G~AaS~aslIl~aG 185 (240)
....||..++.+..+|+|-+++.+=
T Consensus 232 ~~~~pv~vLvn~~TaSaaE~~a~~l 256 (334)
T TIGR00225 232 PYNLPLVVLVNRGSASASEIFAGAL 256 (334)
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHH
Confidence 1345899999999999998875543
No 144
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=55.57 E-value=70 Score=30.08 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=63.9
Q ss_pred EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHH-----------HHHHHhhcCCCeEEEEcceechH
Q 026362 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA-----------IYDCMSWIKPKVGTVCFGVAASQ 177 (240)
Q Consensus 109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGla-----------Iyd~L~~~~~~V~Tvv~G~AaS~ 177 (240)
|++|-+.....+.+...+. +..+. .-|+.+...|.|+-+.+|+. ++...+.-..|..+++.|-++..
T Consensus 144 f~gGSmG~v~geKi~ra~e-~A~~~-rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIE-YATNE-SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred ccccCcCHHHHHHHHHHHH-HHHHc-CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 4677788877777766544 43333 45888888999988766551 22212234468899999988888
Q ss_pred HHHHHcC-CCCCcEEeccCceEeeecCC
Q 026362 178 AAIILAG-GEKGMRYAMPNARIMLNQPQ 204 (240)
Q Consensus 178 aslIl~a-G~kgkR~a~PnA~iMIHqP~ 204 (240)
++..++. ||- .++-|+|.+-+--|.
T Consensus 222 ~aas~a~l~Di--iiae~~A~IgfAGPr 247 (296)
T CHL00174 222 VTASFGMLGDI--IIAEPNAYIAFAGKR 247 (296)
T ss_pred HHHHHHHcccE--EEEeCCeEEEeeCHH
Confidence 8877665 886 677789988886664
No 145
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=55.15 E-value=61 Score=32.42 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=64.6
Q ss_pred EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHH-------HH-HHHhh-cCCCeEEEEcceechHHH
Q 026362 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA-------IY-DCMSW-IKPKVGTVCFGVAASQAA 179 (240)
Q Consensus 109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGla-------Iy-d~L~~-~~~~V~Tvv~G~AaS~as 179 (240)
|.+|-+.....+.++..+. +..+. .-++..++.|.|+.+..+.. ++ ...+. -..|..+++.|-|...++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e-~A~~~-~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMD-LAMKM-GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHH-HHHHc-CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 5678888877777766443 44444 35888888999988754331 22 22222 236899999999999999
Q ss_pred HHHcCCCCCcEEeccC-ceEeeecCC
Q 026362 180 IILAGGEKGMRYAMPN-ARIMLNQPQ 204 (240)
Q Consensus 180 lIl~aG~kgkR~a~Pn-A~iMIHqP~ 204 (240)
+.++.+|. .++.++ +.+.+--|.
T Consensus 171 ~~~al~D~--vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 171 YSPALTDF--IYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHhcCc--eEEeccceEEEecChH
Confidence 99999996 788886 567775554
No 146
>PRK11186 carboxy-terminal protease; Provisional
Probab=53.07 E-value=57 Score=33.92 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=54.7
Q ss_pred CcEEEEcc-ccChhHHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHh----------------------
Q 026362 105 NRIIFIGQ-PINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMS---------------------- 160 (240)
Q Consensus 105 ~RIIfl~g-~Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~---------------------- 160 (240)
++|-+|.= ......++++...|..|..++ .+.+.|=+ |-|||++.++..|.+.+-
T Consensus 353 ~kIGYI~I~sF~~~~~~d~~~~l~~l~~~~-v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~ 431 (667)
T PRK11186 353 EKVGVLDIPGFYVGLTDDVKKQLQKLEKQN-VSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTD 431 (667)
T ss_pred CcEEEEEecccccchHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCC
Confidence 45555421 133345677888887787644 45566666 789999999998887641
Q ss_pred ---hcCCCeEEEEcceechHHHHHHcC
Q 026362 161 ---WIKPKVGTVCFGVAASQAAIILAG 184 (240)
Q Consensus 161 ---~~~~~V~Tvv~G~AaS~aslIl~a 184 (240)
....|+..++.+..||++-++..+
T Consensus 432 ~~~~~~gPlvVLVN~~SASASEIfA~a 458 (667)
T PRK11186 432 GVVYYKGPLVVLVDRYSASASEIFAAA 458 (667)
T ss_pred cccccCCCEEEEeCCCCccHHHHHHHH
Confidence 123488899999999998877554
No 147
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=51.05 E-value=41 Score=33.26 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=62.7
Q ss_pred EEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCc--cHhHHHH-------HHHHHh-hc-CCCeEEEEcceechH
Q 026362 109 FIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGG--SIYSVLA-------IYDCMS-WI-KPKVGTVCFGVAASQ 177 (240)
Q Consensus 109 fl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGG--sV~aGla-------Iyd~L~-~~-~~~V~Tvv~G~AaS~ 177 (240)
+++|-+.+.....+...+. +..+. .-++..+++|.|+ .+..|+. |+..+. .. ..|+.+++.|-|...
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~-~A~~~-~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg 145 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIE-LALEN-GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGG 145 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHH-HHHHH-TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGG
T ss_pred eecCCCCcccceeeehHHH-HHHHc-CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccc
Confidence 4567788887777666544 44434 3578788899999 5544333 222222 11 469999999999999
Q ss_pred HHHHHcCCCCCcEEeccC-ceEeeecCC
Q 026362 178 AAIILAGGEKGMRYAMPN-ARIMLNQPQ 204 (240)
Q Consensus 178 aslIl~aG~kgkR~a~Pn-A~iMIHqP~ 204 (240)
++++.+.++- .++.+. +++.+.-|.
T Consensus 146 ~A~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 146 GAYLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp GGHHHHHSSE--EEEETTTCEEESSTHH
T ss_pred hhhcccccCc--cccCccceEEEecccc
Confidence 9999888885 666676 998887664
No 148
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=48.38 E-value=63 Score=30.86 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=54.6
Q ss_pred CcEEEEc-cccChhHHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHhh---------------------
Q 026362 105 NRIIFIG-QPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW--------------------- 161 (240)
Q Consensus 105 ~RIIfl~-g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~~--------------------- 161 (240)
++|-||. ...+...+.++.+.|..+...+ .+.+.|=+ |-|||.+..+..|.+.+-.
T Consensus 194 ~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (389)
T PLN00049 194 PKIGYIKLTTFNQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADG 272 (389)
T ss_pred CCEEEEEeccccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCC
Confidence 3566643 1245566778888888887644 45566655 7789999999888887721
Q ss_pred -----cCCCeEEEEcceechHHHHHHc
Q 026362 162 -----IKPKVGTVCFGVAASQAAIILA 183 (240)
Q Consensus 162 -----~~~~V~Tvv~G~AaS~aslIl~ 183 (240)
...|+..++.+..||++-++..
T Consensus 273 ~~~~~~~~PvvVLvn~~TaSasEi~a~ 299 (389)
T PLN00049 273 SSAIATSEPLAVLVNKGTASASEILAG 299 (389)
T ss_pred CccccCCCCEEEEECCCCccHHHHHHH
Confidence 1248889999999999887743
No 149
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=46.54 E-value=53 Score=27.09 Aligned_cols=55 Identities=18% Similarity=0.397 Sum_probs=30.5
Q ss_pred CcEEEEccccChhHH--HHHHHHHHhhhccCCCCCceEEEeCCCcc--HhHHHHHHHHHh
Q 026362 105 NRIIFIGQPINSMVA--QRAISQLVTLATIDEDADILMYLNCPGGS--IYSVLAIYDCMS 160 (240)
Q Consensus 105 ~RIIfl~g~Id~~~a--~~~iaqLl~L~~~d~~~~I~l~INSPGGs--V~aGlaIyd~L~ 160 (240)
..+-|..=||+++.+ ..-+++|+.+=..-+ ++-.|++||-.|. .+.++.||++|+
T Consensus 91 ~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p-~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 91 NGLRYYRIPITDHQAPDPEDIDAFINFVKSLP-KDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp TT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCCCHHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 445565556665442 333444443222222 3678999998876 789999999986
No 150
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=44.45 E-value=5.9 Score=36.49 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCCC
Q 026362 154 AIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSGS 207 (240)
Q Consensus 154 aIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g~ 207 (240)
.-|..|..++.||.+-+-|-|.++|.=|..|||- ||+...|.|-|.+.-.|.
T Consensus 117 ~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvgl 168 (292)
T KOG1681|consen 117 DTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVGL 168 (292)
T ss_pred HHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeeeh
Confidence 3466777888899999999999999999999997 999999999999887664
No 151
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.84 E-value=1e+02 Score=25.88 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=48.1
Q ss_pred CChhhhhcc------CcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC-ccHhHHHHHHHHHhhcCCCeEE
Q 026362 96 LDLSSVLFR------NRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG-GSIYSVLAIYDCMSWIKPKVGT 168 (240)
Q Consensus 96 ~dl~~~L~~------~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG-GsV~aGlaIyd~L~~~~~~V~T 168 (240)
.|+...+++ .|+.++|+ ++++++.+.+.|. ...| .+.+.-..+| -+-.+--.|.+.|+..++++..
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~--~~~~~~~~~~~l~---~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGG--SEEVLEKAAANLR---RRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeC--CHHHHHHHHHHHH---HHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 445555443 46777887 4676776766654 3344 3555433333 4667888999999999999999
Q ss_pred EEccee
Q 026362 169 VCFGVA 174 (240)
Q Consensus 169 vv~G~A 174 (240)
+++|.=
T Consensus 107 vglG~P 112 (172)
T PF03808_consen 107 VGLGAP 112 (172)
T ss_pred EECCCC
Confidence 998854
No 152
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=43.28 E-value=68 Score=30.21 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=55.1
Q ss_pred EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCC
Q 026362 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGE 186 (240)
Q Consensus 107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~ 186 (240)
.|-|+|. +-.-..|++.|..++. |++.+..+.|-=+||+-.+--+-|=.=+..+.||..++.|..+ .
T Consensus 175 ~IGiGGD--pi~Gt~fid~L~~fe~-Dp~T~~ivmiGEiGG~aEe~AA~~i~~~~~~KPVVa~iaG~ta----------p 241 (293)
T COG0074 175 AIGIGGD--PIPGTSFIDALEMFEA-DPETEAIVMIGEIGGPAEEEAAEYIKANATRKPVVAYIAGRTA----------P 241 (293)
T ss_pred EEEeCCC--CcCCccHHHHHHHHhc-CccccEEEEEecCCCcHHHHHHHHHHHhccCCCEEEEEeccCC----------C
Confidence 4445553 3333467787777765 6677889999999999875444221114444899999999988 7
Q ss_pred CCcEEeccCceEee
Q 026362 187 KGMRYAMPNARIML 200 (240)
Q Consensus 187 kgkR~a~PnA~iMI 200 (240)
+|||+..-.|.++=
T Consensus 242 ~gkrmGhaGaiv~~ 255 (293)
T COG0074 242 EGKRMGHAGAIVSG 255 (293)
T ss_pred ccchhhhhhhhhcC
Confidence 78888766666543
No 153
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=42.59 E-value=1.5e+02 Score=26.52 Aligned_cols=132 Identities=8% Similarity=0.104 Sum_probs=68.5
Q ss_pred CCChhhhhccCcEEEEcc--ccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCcc----HhH---HHHHHHHHhhcCCC
Q 026362 95 PLDLSSVLFRNRIIFIGQ--PINSMVAQRAISQLVTLATIDEDADILMYLNCPGGS----IYS---VLAIYDCMSWIKPK 165 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g--~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGs----V~a---GlaIyd~L~~~~~~ 165 (240)
+..+|.. ++.++++.+ ++.+.....+.+.++.+-.+...+.|...=-.+.+. |+. .-...+.++..
T Consensus 68 p~riY~~--~~~~vv~~~~~~i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~~~~~v~~~at~~~~~~~l~~~--- 142 (238)
T TIGR00161 68 PVRIYEG--KDGIVLFLSDFIIPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVREKSQPVFGAANSQELIERLKDL--- 142 (238)
T ss_pred ceEEEec--CCcEEEEEecccCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCCCCCcEEEEECCHHHHHHHHHh---
Confidence 3445543 233344444 466777788999988766554444443322222222 111 11123333332
Q ss_pred eEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCC------------------CCCCCHHHHHHHHHHHHHHHHH
Q 026362 166 VGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQS------------------GSGGHVEDVKRQVNEAVISRHV 227 (240)
Q Consensus 166 V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~------------------g~~G~a~di~~~a~eL~~~r~~ 227 (240)
+.-.-.|...++.++|+.-|. +.-+|..-+|-.-+.. +..=+.+++.++|+++++.-+.
T Consensus 143 ~~~~~~g~i~G~~g~ll~~a~---~~gi~~i~Ll~et~~~~PDP~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~~e 219 (238)
T TIGR00161 143 IEIFPFGNLNGISGTLLTRCA---VNDIPAICLLAETLGPYPDPRAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRLKK 219 (238)
T ss_pred cCcCCCCEEechhHHHHHHHH---HcCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHH
Confidence 111223566666666666554 2446666666543221 1223678899999888877666
Q ss_pred HHHHHHH
Q 026362 228 SLSFLLL 234 (240)
Q Consensus 228 i~~iyA~ 234 (240)
+.+.+.+
T Consensus 220 l~e~~~~ 226 (238)
T TIGR00161 220 LAEQVQG 226 (238)
T ss_pred HHHHHHH
Confidence 6666544
No 154
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=39.79 E-value=1.2e+02 Score=27.38 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=51.9
Q ss_pred CcEEEEc-cccChhHHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHhhc--------------------
Q 026362 105 NRIIFIG-QPINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSWI-------------------- 162 (240)
Q Consensus 105 ~RIIfl~-g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~~~-------------------- 162 (240)
++|-||. ...++..++++.+.+..++.++ .+.+.|=+ +-|||.+..+..|.+.+-.-
T Consensus 64 ~~IGYi~i~~F~~~~~~~l~~a~~~l~~~~-~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~~~~~~~~~~~~~~ 142 (256)
T cd07561 64 KKVGYLVYNSFTSGYDDELNQAFAEFKAQG-VTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFATLEYNDKRSANN 142 (256)
T ss_pred CcEEEEEECccccchHHHHHHHHHHHHHcC-CCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCeEEEEEecCCccCCC
Confidence 4455532 1233445677888888887654 44555555 67899999988887777641
Q ss_pred -----------------CCCeEEEEcceechHHHHHHcC
Q 026362 163 -----------------KPKVGTVCFGVAASQAAIILAG 184 (240)
Q Consensus 163 -----------------~~~V~Tvv~G~AaS~aslIl~a 184 (240)
..||..++.+..||+|-++..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~pv~VL~~~~TASAaE~~a~~ 181 (256)
T cd07561 143 EDLLFSSKTLAGGNSLNLSKVYVLTSGSTASASELVINS 181 (256)
T ss_pred ceeecccccccccCcCCcccEEEEECCCcccHHHHHHHH
Confidence 0267788888888888776543
No 155
>smart00245 TSPc tail specific protease. tail specific protease
Probab=36.92 E-value=1.6e+02 Score=24.92 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=46.8
Q ss_pred cChhHHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHhhc-------------------------CCCeE
Q 026362 114 INSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSWI-------------------------KPKVG 167 (240)
Q Consensus 114 Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~~~-------------------------~~~V~ 167 (240)
.+..+.+.+.+.+..|...+ .+.+.|-+ +.+||.+.++..+.+.+-.- ..||.
T Consensus 38 f~~~~~~~~~~~~~~l~~~~-~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 116 (192)
T smart00245 38 FSEHTSNLVEKAWKKLEKTN-VEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPANLGRKYSKPLV 116 (192)
T ss_pred EChhhHHHHHHHHHHHHhCC-CcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecCCCcccCCCEE
Confidence 34445566777777776543 34555555 55899999988888776211 14677
Q ss_pred EEEcceechHHHHHHcCC
Q 026362 168 TVCFGVAASQAAIILAGG 185 (240)
Q Consensus 168 Tvv~G~AaS~aslIl~aG 185 (240)
.++.+..+|+|-+++.+=
T Consensus 117 vL~~~~TaSaaE~~a~~l 134 (192)
T smart00245 117 VLVNEGTASASEIFAGAL 134 (192)
T ss_pred EEECCCCeeHHHHHHHHH
Confidence 888888888887775544
No 156
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=36.70 E-value=1.1e+02 Score=24.47 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHhh-----------------------------cCCCeE
Q 026362 118 VAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW-----------------------------IKPKVG 167 (240)
Q Consensus 118 ~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~~-----------------------------~~~~V~ 167 (240)
..+.+.+.+..+.. ...+.+.|=+ +.+||+...+..+...+.. ...+|.
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (169)
T PF03572_consen 16 FDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPVY 94 (169)
T ss_dssp HHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEEE
T ss_pred cHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCEE
Confidence 44455555555554 2345666666 7789999988888776641 345788
Q ss_pred EEEcceechHHHHHHcCC
Q 026362 168 TVCFGVAASQAAIILAGG 185 (240)
Q Consensus 168 Tvv~G~AaS~aslIl~aG 185 (240)
.++.+.++|+|-+++.+-
T Consensus 95 vL~~~~t~Saae~fa~~l 112 (169)
T PF03572_consen 95 VLTDENTASAAEIFASAL 112 (169)
T ss_dssp EEE-TTBBTHHHHHHHHH
T ss_pred EEeCCCCCChhHHHHHHH
Confidence 999999999998876554
No 157
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=36.52 E-value=72 Score=27.15 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=25.0
Q ss_pred EEEeCCCccHhHHHHHHHHHhhcCCCeEEE
Q 026362 140 MYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 140 l~INSPGGsV~aGlaIyd~L~~~~~~V~Tv 169 (240)
|.|| ||+...-..||.|+++.+..|+.=+
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~vEV 98 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVVEV 98 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEEEE
Confidence 7777 7999999999999999999876544
No 158
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=34.85 E-value=2e+02 Score=25.68 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=46.7
Q ss_pred hhccCcEEEEccc-cChhHHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHhh-----------------
Q 026362 101 VLFRNRIIFIGQP-INSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW----------------- 161 (240)
Q Consensus 101 ~L~~~RIIfl~g~-Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~~----------------- 161 (240)
++..++|.||.-+ ++++....+..+++... + .+.+.|=+ |-+||++.. .|.+.+..
T Consensus 83 ~~~~~~igYi~i~~~~~~~~~~~~~~~~~~~--~-~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~~~ 157 (266)
T cd07562 83 ELSDGRIGYVHIPDMGDDGFAEFLRDLLAEV--D-KDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPVTY 157 (266)
T ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHHHhcC--C-CceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCCCC
Confidence 3344667665321 24444555666654322 2 45555555 557888543 33344321
Q ss_pred ----cCCCeEEEEcceechHHHHHHcC
Q 026362 162 ----IKPKVGTVCFGVAASQAAIILAG 184 (240)
Q Consensus 162 ----~~~~V~Tvv~G~AaS~aslIl~a 184 (240)
.+.||..++.+.++|+|-+++.+
T Consensus 158 p~~~~~~pv~vL~~~~t~SaaE~~a~~ 184 (266)
T cd07562 158 PSGRWRGPVVVLVNEGSASDAEIFAYG 184 (266)
T ss_pred cccccCCCEEEEECCCCCchHHHHHHH
Confidence 35799999999999999877543
No 159
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=34.12 E-value=1.5e+02 Score=29.07 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=59.1
Q ss_pred CcEEEEccc-----cChhHHHHHHHHHHhhhccCCCCCceEEEe------CCCccHhH-------------------HHH
Q 026362 105 NRIIFIGQP-----INSMVAQRAISQLVTLATIDEDADILMYLN------CPGGSIYS-------------------VLA 154 (240)
Q Consensus 105 ~RIIfl~g~-----Id~~~a~~~iaqLl~L~~~d~~~~I~l~IN------SPGGsV~a-------------------Gla 154 (240)
.|++-|+-| +|-++...+..+|..++..+..+ +.|.=- |-||||-+ =..
T Consensus 48 ~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k-~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYs 126 (401)
T KOG1684|consen 48 ARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVK-LVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYS 126 (401)
T ss_pred eeEEEecCchhhccccHHHHHHHHHHHHhhccCCCce-EEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 345555544 78888889999999888644222 222223 34788542 223
Q ss_pred HHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCc
Q 026362 155 IYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNA 196 (240)
Q Consensus 155 Iyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA 196 (240)
+...+-.+..|+.++.+|+-.+.|.=|..-|.- |+|....
T Consensus 127 l~~~igtY~KP~ValmdGITMGgG~GLS~hg~f--RVATerT 166 (401)
T KOG1684|consen 127 LNHLIGTYLKPYVALMDGITMGGGVGLSVHGRF--RVATERT 166 (401)
T ss_pred HHHHHHHhcCceEEEeeceeecCCcceeeccee--EEeeccc
Confidence 445666778899999999999999888887754 5554433
No 160
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=33.01 E-value=2.3e+02 Score=23.74 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=43.1
Q ss_pred CcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceechH
Q 026362 105 NRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAASQ 177 (240)
Q Consensus 105 ~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~ 177 (240)
.|+.++|+ ++++.+.+.+.| ....|.-.|.-+-+-|-+.... ..|.+.|+...+++.-+++|.=-.-
T Consensus 47 ~~v~llG~--~~~~~~~~~~~l---~~~yp~l~i~g~~~g~~~~~~~-~~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 47 LRVFLLGA--KPEVLEKAAERL---RARYPGLKIVGYHHGYFGPEEE-EEIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CeEEEECC--CHHHHHHHHHHH---HHHCCCcEEEEecCCCCChhhH-HHHHHHHHHcCCCEEEEECCCCHHH
Confidence 46777776 566666666554 4445544444444555555443 3499999999999999998864443
No 161
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=32.77 E-value=70 Score=28.96 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=31.2
Q ss_pred ceEEEeCCC-ccHhHHHHHHHHHhhcCCCeEEEEcce
Q 026362 138 ILMYLNCPG-GSIYSVLAIYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 138 I~l~INSPG-GsV~aGlaIyd~L~~~~~~V~Tvv~G~ 173 (240)
|.+.+..+| |.++-+++|.+.|+. ..+|.-++.|.
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 678899999 999999999999998 88888777666
No 162
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=31.09 E-value=1.4e+02 Score=28.87 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=57.0
Q ss_pred EEEEcc-ccChhHHHHHHHHHHhhhccCCCCCceEEE-eCCCccHhHHHHHHHHHhh-----------------------
Q 026362 107 IIFIGQ-PINSMVAQRAISQLVTLATIDEDADILMYL-NCPGGSIYSVLAIYDCMSW----------------------- 161 (240)
Q Consensus 107 IIfl~g-~Id~~~a~~~iaqLl~L~~~d~~~~I~l~I-NSPGGsV~aGlaIyd~L~~----------------------- 161 (240)
|-||.= ..++...+++-..|..|+.+. .+-+.|-+ |-|||.+.++..|.+....
T Consensus 205 IGyI~I~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~ 283 (406)
T COG0793 205 IGYIRIPSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGE 283 (406)
T ss_pred EEEEEecccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccc
Confidence 555431 245566777888888888766 56677777 8899999999999888762
Q ss_pred --cCCCeEEEEcceechHHHHHHcC
Q 026362 162 --IKPKVGTVCFGVAASQAAIILAG 184 (240)
Q Consensus 162 --~~~~V~Tvv~G~AaS~aslIl~a 184 (240)
...|+..++.+..||++-++..+
T Consensus 284 ~~~~~PlvvLvn~~SASAsEI~aga 308 (406)
T COG0793 284 ALYDGPLVVLVNEGSASASEIFAGA 308 (406)
T ss_pred cCCCCCEEEEECCCCccHHHHHHHH
Confidence 13588999999999998877544
No 163
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.85 E-value=1.4e+02 Score=23.79 Aligned_cols=66 Identities=26% Similarity=0.240 Sum_probs=39.8
Q ss_pred CcEEEEccccChhH--HHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHH--HHHHHhhcCCCeEEEEcce
Q 026362 105 NRIIFIGQPINSMV--AQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLA--IYDCMSWIKPKVGTVCFGV 173 (240)
Q Consensus 105 ~RIIfl~g~Id~~~--a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGla--Iyd~L~~~~~~V~Tvv~G~ 173 (240)
+|++++|+-|++-. ...+... |....+..++.+.=-+-+|+....+. +...+...++++.++..|.
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~---l~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ 71 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETY---LAARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGI 71 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHH---HHHhCCCCCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEeec
Confidence 58899998888754 2223333 33333344677766677787766553 3333444557888887763
No 164
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=29.72 E-value=1e+02 Score=28.39 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeec
Q 026362 151 SVLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQ 202 (240)
Q Consensus 151 aGlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHq 202 (240)
.-..+++.+...+.||..-++|.|...|-=+.++||- |++..++.+-+-.
T Consensus 112 ~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDi--Rva~s~akmGLvE 161 (291)
T KOG1679|consen 112 GLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDI--RVAASSAKMGLVE 161 (291)
T ss_pred HHHHHHHHHHhCCccceehhcchhcccchhhhhhccc--eehhhhccccccc
Confidence 3445888899999999999999999999999999997 9998888776644
No 165
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=26.17 E-value=34 Score=32.45 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhhcCCCeEEEEc-----------ceechHHHHHHcCCCCCcEEeccCce
Q 026362 150 YSVLAIYDCMSWIKPKVGTVCF-----------GVAASQAAIILAGGEKGMRYAMPNAR 197 (240)
Q Consensus 150 ~aGlaIyd~L~~~~~~V~Tvv~-----------G~AaS~aslIl~aG~kgkR~a~PnA~ 197 (240)
.+.++|||+.|.+...+..--. -+.....++||+||. ++|+-.+-+.
T Consensus 123 ~a~ltiydm~k~~~~~~~i~~~~l~~k~gg~s~~~~~~i~~IILAGGk-SsRMG~dKaL 180 (346)
T PRK14500 123 VAALTIYDMCKSISPHIIIKETRLIEKSGGKADLSQTPLYGLVLTGGK-SRRMGKDKAL 180 (346)
T ss_pred HHHHHHHHHHhccCCCcEEeeEEEEEecCCcCCCCCCCceEEEEeccc-cccCCCCccc
Confidence 4789999999998864322211 133456678888887 4677544333
No 166
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=25.70 E-value=2.5e+02 Score=26.33 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=50.3
Q ss_pred EEEEccc--cChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEcceec
Q 026362 107 IIFIGQP--INSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVAA 175 (240)
Q Consensus 107 IIfl~g~--Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~Aa 175 (240)
+|-++.+ .|- .+.+-|.||..++..+-|.||+-+-|-.+..+....+..+. +.||..+..|..+
T Consensus 180 ~VS~Gn~~~adv----~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 180 CVGIGGDPFNGT----NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEeCCCCCCCC----CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 5567776 443 46677778887778899999999977788888888888664 7899999988765
No 167
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=23.57 E-value=89 Score=28.85 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcCCCeEEEEcceechHHHHHHcCCCCCcEEeccCceEeeecCCCC
Q 026362 152 VLAIYDCMSWIKPKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIMLNQPQSG 206 (240)
Q Consensus 152 GlaIyd~L~~~~~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMIHqP~~g 206 (240)
.|-+--.||.++.+|.+.|-|+|...|-.+-.-|+- -++..||+|-=.-|..|
T Consensus 105 vLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VG 157 (282)
T COG0447 105 VLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVG 157 (282)
T ss_pred hhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeee--eeehhcchhcCCCCCcc
Confidence 344555788888999999999999999999999987 58888999988888855
No 168
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=23.32 E-value=1.4e+02 Score=22.30 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=43.4
Q ss_pred EEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCcc-Hh-HHHH-HHHHHhhcC-CCeEEEEcceechHHHHHH
Q 026362 107 IIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGS-IY-SVLA-IYDCMSWIK-PKVGTVCFGVAASQAAIIL 182 (240)
Q Consensus 107 IIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGs-V~-aGla-Iyd~L~~~~-~~V~Tvv~G~AaS~aslIl 182 (240)
++.+.|+++-..++.+.+++..+-...+.+ .+.|+--|=. ++ +|+. +....+..+ ..+..+..|.-....-++-
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~--~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~ 88 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIK--HLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAVKRLFE 88 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCC--EEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 557899999999999999987543222223 4444443311 11 1222 223333333 3456666676666666665
Q ss_pred cCCC
Q 026362 183 AGGE 186 (240)
Q Consensus 183 ~aG~ 186 (240)
.+|-
T Consensus 89 ~~gl 92 (106)
T TIGR02886 89 LSGL 92 (106)
T ss_pred HhCC
Confidence 5554
No 169
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=23.01 E-value=4.8e+02 Score=26.50 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=51.3
Q ss_pred ccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCC----------ccHhHHHHHHHHHhhcCCCeEEEEcceechHHHH
Q 026362 111 GQPINSMVAQRAISQLVTLATIDEDADILMYLNCPG----------GSIYSVLAIYDCMSWIKPKVGTVCFGVAASQAAI 180 (240)
Q Consensus 111 ~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPG----------GsV~aGlaIyd~L~~~~~~V~Tvv~G~AaS~asl 180 (240)
+|-++.+++.... .++.|-... +=|+.+.-|+|| |-...|--+.++....+.|-.|+..|-+.. |.+
T Consensus 362 ~G~L~s~sa~Kga-rfIe~c~q~-~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y 438 (536)
T KOG0540|consen 362 GGVLFSESAVKGA-RFIELCDQR-NIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNY 438 (536)
T ss_pred ccccchhhhhhhH-HHHHHHHhc-CCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Ccc
Confidence 3566777665433 333343323 457888889988 222344456666667777888888888777 554
Q ss_pred HHc----CCCCCcEEeccCceEee
Q 026362 181 ILA----GGEKGMRYAMPNARIML 200 (240)
Q Consensus 181 Il~----aG~kgkR~a~PnA~iMI 200 (240)
-+| .|+- -|+-|||+|-+
T Consensus 439 ~m~sr~~~gd~--~yawP~A~Iav 460 (536)
T KOG0540|consen 439 AMCSRGYSGDI--NYAWPNARIAV 460 (536)
T ss_pred cccccccCCce--eEEcccceeee
Confidence 422 2332 46667887766
No 170
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.74 E-value=2.5e+02 Score=22.76 Aligned_cols=63 Identities=10% Similarity=0.011 Sum_probs=33.6
Q ss_pred cEEEEccccChhHH-----HHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEEEccee
Q 026362 106 RIIFIGQPINSMVA-----QRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTVCFGVA 174 (240)
Q Consensus 106 RIIfl~g~Id~~~a-----~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tvv~G~A 174 (240)
||+|+|+-|++... .....++... -.+.++=..-||+.....-+.+.+...++++..+..|.-
T Consensus 1 ~iv~~GDSit~G~g~~~~~~~~~~~~~~~------~~~~v~N~g~~G~~~~~~~~~~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 1 PWVFYGTSISQGACASRPGMAWTAILARR------LGLEVINLGFSGNARLEPEVAELLRDVPADLYIIDCGPN 68 (177)
T ss_pred CEEEEeCchhcCcCCCCCCCcHHHHHHHH------hCCCeEEeeecccccchHHHHHHHHhcCCCEEEEEeccC
Confidence 57777777766431 1122222111 124455555566644333455666677778777777754
No 171
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=20.69 E-value=85 Score=27.63 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=31.1
Q ss_pred cChhHHHHHHHHHHh------hhccC-CCCCceEEEeCCCccHhHHHHHHHH
Q 026362 114 INSMVAQRAISQLVT------LATID-EDADILMYLNCPGGSIYSVLAIYDC 158 (240)
Q Consensus 114 Id~~~a~~~iaqLl~------L~~~d-~~~~I~l~INSPGGsV~aGlaIyd~ 158 (240)
++++.+.+++.+++. +...+ +-..+.=.+.||||...+|+...+.
T Consensus 184 l~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGtT~~gl~~le~ 235 (258)
T PRK06476 184 LKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLNEQVLNDFSR 235 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCchHHHHHHHHHH
Confidence 677777788887775 22222 2245666789999999999886653
No 172
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=20.55 E-value=5.7e+02 Score=22.30 Aligned_cols=49 Identities=18% Similarity=0.051 Sum_probs=34.7
Q ss_pred CCceEEE-eCCCccHhHHHHHHHHHh---------------------------------hcCCCeEEEEcceechHHHHH
Q 026362 136 ADILMYL-NCPGGSIYSVLAIYDCMS---------------------------------WIKPKVGTVCFGVAASQAAII 181 (240)
Q Consensus 136 ~~I~l~I-NSPGGsV~aGlaIyd~L~---------------------------------~~~~~V~Tvv~G~AaS~aslI 181 (240)
+.+.|=+ +.+||+...+..|.+.+- ..+.||..++.+..+|+|-.+
T Consensus 96 ~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~T~SaaE~~ 175 (250)
T cd07563 96 DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEF 175 (250)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCEEEEeCCCcCcHHHHH
Confidence 4455555 557999888877777664 112478899999999998877
Q ss_pred HcC
Q 026362 182 LAG 184 (240)
Q Consensus 182 l~a 184 (240)
..+
T Consensus 176 a~~ 178 (250)
T cd07563 176 AYA 178 (250)
T ss_pred HHH
Confidence 544
No 173
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=20.53 E-value=5.4e+02 Score=21.95 Aligned_cols=75 Identities=16% Similarity=0.037 Sum_probs=47.4
Q ss_pred CChhhhhcc------CcEEEEccccChhHHHHHHHHHHhhhccCCCCCceEEEeCCCccHhHHHHHHHHHhhcCCCeEEE
Q 026362 96 LDLSSVLFR------NRIIFIGQPINSMVAQRAISQLVTLATIDEDADILMYLNCPGGSIYSVLAIYDCMSWIKPKVGTV 169 (240)
Q Consensus 96 ~dl~~~L~~------~RIIfl~g~Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGsV~aGlaIyd~L~~~~~~V~Tv 169 (240)
.|+...|++ -|+.++|+ ++++++...+.|. ...|.-.|.-+ .+.-+-.+--.|.+.|+..++++.-+
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~--~~~v~~~~~~~l~---~~yP~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~V 106 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGG--KPDVLQQLKVKLI---KEYPKLKIVGA--FGPLEPEERKAALAKIARSGAGIVFV 106 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECC--CHHHHHHHHHHHH---HHCCCCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 466655552 25777776 5777777777654 33444344333 22233345577999999999999999
Q ss_pred EcceechH
Q 026362 170 CFGVAASQ 177 (240)
Q Consensus 170 v~G~AaS~ 177 (240)
++|.=---
T Consensus 107 glG~PkQE 114 (177)
T TIGR00696 107 GLGCPKQE 114 (177)
T ss_pred EcCCcHhH
Confidence 98865443
No 174
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=20.11 E-value=5.3e+02 Score=23.71 Aligned_cols=133 Identities=11% Similarity=0.134 Sum_probs=76.3
Q ss_pred CCChhhhhccCcEEEEccc--cChhHHHHHHHHHHhhhccCCCCCceEEEeCCCcc------Hh---HHHHHHHHHhhcC
Q 026362 95 PLDLSSVLFRNRIIFIGQP--INSMVAQRAISQLVTLATIDEDADILMYLNCPGGS------IY---SVLAIYDCMSWIK 163 (240)
Q Consensus 95 ~~dl~~~L~~~RIIfl~g~--Id~~~a~~~iaqLl~L~~~d~~~~I~l~INSPGGs------V~---aGlaIyd~L~~~~ 163 (240)
++++|.- .++++.+-.. |-+...+.+.+.+..|-.+...+.|...=-.|... |+ ..--.-+-++...
T Consensus 68 P~RIY~~--~~~~~~~~~dv~I~p~~i~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e~~~v~~va~~~~~~~~l~~~~ 145 (244)
T COG1938 68 PFRIYAS--SDGVLALVSDVPIPPAVIYEISNAVVEWAEENGVEEVISLGGMPARLREEKPSVYGVATSEEKLEKLKDLG 145 (244)
T ss_pred ceeEEec--CCCEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCcccccCCCceEEEecchhhhhHHhhcC
Confidence 5666666 6777765544 56777888998888665555444433222122211 11 1111233444433
Q ss_pred CCeEEEEcceechHHHHHHcCCCCCcEEeccCceEee------ecCCCC------------CCCCHHHHHHHHHHHHHHH
Q 026362 164 PKVGTVCFGVAASQAAIILAGGEKGMRYAMPNARIML------NQPQSG------------SGGHVEDVKRQVNEAVISR 225 (240)
Q Consensus 164 ~~V~Tvv~G~AaS~aslIl~aG~kgkR~a~PnA~iMI------HqP~~g------------~~G~a~di~~~a~eL~~~r 225 (240)
+...-.|...++.+.|+..|.+ .-+|+..+.- -.|... ..=+.+++.++|++++..-
T Consensus 146 --~~~~~~G~I~G~~g~ll~e~~~---r~i~a~~ll~et~~~~PDP~AAa~vve~lnk~~~l~V~td~L~keAe~i~~~l 220 (244)
T COG1938 146 --AEPLEEGTIVGPSGALLNECLK---RGIPALVLLAETFGDRPDPRAAARVVEALNKMLGLNVDTDKLEKEAEEIEEQL 220 (244)
T ss_pred --CCccccceeecccHHHHHHHHH---cCCCeEEEeccccCCCCChHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHH
Confidence 6677778888888888877764 2244444332 223221 1226788999999888777
Q ss_pred HHHHHHHHH
Q 026362 226 HVSLSFLLL 234 (240)
Q Consensus 226 ~~i~~iyA~ 234 (240)
+.+.+.+.+
T Consensus 221 ekl~eq~~~ 229 (244)
T COG1938 221 EKLAEQLEK 229 (244)
T ss_pred HHHHHHHHH
Confidence 777666654
Done!