Query 026365
Match_columns 239
No_of_seqs 135 out of 294
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 11:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lrv_A LRV, leucine-rich repea 16.5 73 0.0025 27.2 2.5 75 2-99 13-96 (244)
2 3gm3_A Protein tyrosine kinase 13.6 26 0.00087 29.4 -1.2 30 73-102 18-51 (153)
3 2jr2_A UPF0352 protein CPS_261 11.3 63 0.0021 24.3 0.5 20 48-67 41-60 (76)
4 1r1f_A Palicourein; cyclotide, 10.9 84 0.0029 20.7 0.9 14 12-25 2-17 (37)
5 1bh4_A Circulin A; cyclic pept 9.7 1.2E+02 0.0042 19.1 1.3 11 13-23 1-11 (30)
6 1wyu_A Glycine dehydrogenase ( 8.8 97 0.0033 27.0 0.8 32 23-57 1-32 (438)
7 2p9x_A Hypothetical protein PH 8.6 79 0.0027 24.8 0.2 16 29-45 44-59 (99)
8 2dk8_A DNA-directed RNA polyme 8.5 1E+02 0.0036 22.9 0.8 25 48-72 35-59 (81)
9 1yp8_A Tricyclon A; beta-sheet 8.3 1.5E+02 0.0051 19.1 1.3 11 13-23 1-11 (33)
10 2csf_A DNA-binding protein SAT 7.7 1.5E+02 0.0052 23.2 1.4 18 36-53 38-57 (101)
No 1
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=16.46 E-value=73 Score=27.18 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=44.4
Q ss_pred Cccchhhcc-----cCCCCC--CcccccCCCCCCCcccchhhHHHHhhhccc--cHHHHhhcCCCCChHHHHHHHHHHHh
Q 026365 2 SCNGCRVLR-----KGCSES--CILRPCLQWIESPESQGHATVFVAKFFGRA--GLMSFISAVPESQRPALFQSLLYEAC 72 (239)
Q Consensus 2 ~CAACK~lR-----RrC~~d--CilAPYFp~ipa~~~q~fa~~~VhKvFG~s--NV~kmL~~lp~~qR~da~~SLlYEA~ 72 (239)
.|+.|.|+- -+|.+. |+..+|= .. +-+||... -+..++++=.++-|..+++.|
T Consensus 13 ~c~~c~~~~~~~~~~~c~~~~~c~~~~~~-----~r--------i~~~~~~~p~l~~~ll~d~~~~VR~~AA~~l----- 74 (244)
T 1lrv_A 13 DCRVCSFRMSLLLTGRCTPGDACVAVESG-----RQ--------IDRFFRNNPHLAVQYLADPFWERRAIAVRYS----- 74 (244)
T ss_dssp CTTTSTTTTTTGGGTSSBTTTBCSSSSCH-----HH--------HHHHHHHCGGGGGGGTTCSSHHHHHHHHTTS-----
T ss_pred cccCCCCcccchhcCCCCCCchHhhcCcH-----HH--------HHHHHcCCHHHHHHHhcCCCHHHHHHHHHhC-----
Confidence 699999998 789754 9999885 22 44444221 122333333444566666654
Q ss_pred ccccCCCCchhhhhhhhHHHHHHHHHH
Q 026365 73 GRTVNPVNGAVGLLWTGNWHVCQAAVE 99 (239)
Q Consensus 73 aR~rDPVyGcvGiI~~Lq~qI~q~avE 99 (239)
|+.....++..-++.+..++++
T Consensus 75 -----~~~~l~~L~~D~~~~VR~~aA~ 96 (244)
T 1lrv_A 75 -----PVEALTPLIRDSDEVVRRAVAY 96 (244)
T ss_dssp -----CGGGGGGGTTCSSHHHHHHHHT
T ss_pred -----CHHHHHHHccCcCHHHHHHHHH
Confidence 4444555555556777666664
No 2
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=13.59 E-value=26 Score=29.40 Aligned_cols=30 Identities=20% Similarity=0.030 Sum_probs=23.6
Q ss_pred ccccCCCCch----hhhhhhhHHHHHHHHHHHHH
Q 026365 73 GRTVNPVNGA----VGLLWTGNWHVCQAAVETVL 102 (239)
Q Consensus 73 aR~rDPVyGc----vGiI~~Lq~qI~q~avE~vL 102 (239)
-|..|+||++ |+.+..|.+++.++..|.++
T Consensus 18 DRt~D~VY~at~~VVkaV~~Ls~~v~~a~~e~Y~ 51 (153)
T 3gm3_A 18 DRTDDLVYLNVMELVRAVLELKNELAQLPPEGYV 51 (153)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHGGGCCHHHHH
T ss_pred CcCCChHHHHHHHHHHHHHHHHhhhhhcChHHHH
Confidence 4778999988 68888999999877666544
No 3
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=11.32 E-value=63 Score=24.30 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=15.9
Q ss_pred HHHHhhcCCCCChHHHHHHH
Q 026365 48 LMSFISAVPESQRPALFQSL 67 (239)
Q Consensus 48 V~kmL~~lp~~qR~da~~SL 67 (239)
++.+|.++|+.||..++++.
T Consensus 41 vTnlln~V~~~qR~~iAe~F 60 (76)
T 2jr2_A 41 VTNIIAQVPESKRVAVVDNF 60 (76)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 45677799999999887764
No 4
>1r1f_A Palicourein; cyclotide, plant protein; NMR {Palicourea condensata} SCOP: g.3.3.4
Probab=10.86 E-value=84 Score=20.74 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=11.1
Q ss_pred CCCCCCcccc-c-CCC
Q 026365 12 GCSESCILRP-C-LQW 25 (239)
Q Consensus 12 rC~~dCilAP-Y-Fp~ 25 (239)
-|.+.|++-| + |.|
T Consensus 2 pCGEsCv~iP~Ct~t~ 17 (37)
T 1r1f_A 2 FCGETCRVIPVCTYSA 17 (37)
T ss_dssp CCSSCCSSSCSCSSGG
T ss_pred CcccceEEcccccccc
Confidence 4889999999 7 743
No 5
>1bh4_A Circulin A; cyclic peptide, cystine knot, anti-HIV activity; NMR {Chassalia parviflora} SCOP: g.3.3.3 PDB: 2eri_A 2kcg_A 2knm_A 2knn_A* 2kux_A 1vb8_A 1nbj_A
Probab=9.70 E-value=1.2e+02 Score=19.07 Aligned_cols=11 Identities=55% Similarity=1.546 Sum_probs=9.2
Q ss_pred CCCCCcccccC
Q 026365 13 CSESCILRPCL 23 (239)
Q Consensus 13 C~~dCilAPYF 23 (239)
|.+.|++-|+|
T Consensus 1 CGEsCv~~pC~ 11 (30)
T 1bh4_A 1 CGESCVWIPCI 11 (30)
T ss_dssp CCCCCSSSCCS
T ss_pred CCcceeeeEcc
Confidence 67889888887
No 6
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=8.82 E-value=97 Score=27.02 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=21.0
Q ss_pred CCCCCCCcccchhhHHHHhhhccccHHHHhhcCCC
Q 026365 23 LQWIESPESQGHATVFVAKFFGRAGLMSFISAVPE 57 (239)
Q Consensus 23 Fp~ipa~~~q~fa~~~VhKvFG~sNV~kmL~~lp~ 57 (239)
|+|||+.+.+..+ .-+..|+..|-.++.++|+
T Consensus 1 ~~~~~~~~~~~~~---ml~~~g~~~~~~~~~~~p~ 32 (438)
T 1wyu_A 1 MDYTPHTEEEIRE---MLRRVGAASLEDLFAHLPK 32 (438)
T ss_dssp CCCCCCCHHHHHH---HHHHHTCSSTGGGGTTSCG
T ss_pred CCCCCcCHHHHHH---HHHHcCCCCHHHHHHhCcH
Confidence 4556766544332 6778899998887776654
No 7
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=8.65 E-value=79 Score=24.77 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.5
Q ss_pred CcccchhhHHHHhhhcc
Q 026365 29 PESQGHATVFVAKFFGR 45 (239)
Q Consensus 29 ~~~q~fa~~~VhKvFG~ 45 (239)
++|++|.. .|.++||-
T Consensus 44 eDP~kFke-aV~~LFGE 59 (99)
T 2p9x_A 44 DDPQKFKE-AVSKLFGE 59 (99)
T ss_dssp HCHHHHHH-HHHHHHCH
T ss_pred cCHHHHHH-HHHHHHHH
Confidence 47889987 79999995
No 8
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=8.53 E-value=1e+02 Score=22.89 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHh
Q 026365 48 LMSFISAVPESQRPALFQSLLYEAC 72 (239)
Q Consensus 48 V~kmL~~lp~~qR~da~~SLlYEA~ 72 (239)
|.++|-++++++|..+++.|+-+-.
T Consensus 35 L~~~~p~~~~~~r~~aIN~LL~~gk 59 (81)
T 2dk8_A 35 IQNEMPHIEAQQRAVAINRLLSMGQ 59 (81)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 6666777888899999999987654
No 9
>1yp8_A Tricyclon A; beta-sheet, cystine knot, cyclic backbone, cyclotide, cell cycle; NMR {Viola tricolor}
Probab=8.32 E-value=1.5e+02 Score=19.09 Aligned_cols=11 Identities=55% Similarity=1.355 Sum_probs=9.6
Q ss_pred CCCCCcccccC
Q 026365 13 CSESCILRPCL 23 (239)
Q Consensus 13 C~~dCilAPYF 23 (239)
|-+.|++-|++
T Consensus 1 CGESCv~~pC~ 11 (33)
T 1yp8_A 1 CGESCFLGTCY 11 (33)
T ss_dssp CCCCCSSSCCS
T ss_pred CCcceEeeEec
Confidence 77889999987
No 10
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=7.73 E-value=1.5e+02 Score=23.24 Aligned_cols=18 Identities=11% Similarity=0.192 Sum_probs=14.1
Q ss_pred hHHHHhhhcc--ccHHHHhh
Q 026365 36 TVFVAKFFGR--AGLMSFIS 53 (239)
Q Consensus 36 ~~~VhKvFG~--sNV~kmL~ 53 (239)
++|+.+||++ ..+..||+
T Consensus 38 a~FAk~vlnRsQGtLSelLR 57 (101)
T 2csf_A 38 ALFAKVAANKSQGWLCELLR 57 (101)
T ss_dssp HHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhchhHHHHHHh
Confidence 4578999998 56778887
Done!