Query 026366
Match_columns 239
No_of_seqs 267 out of 1135
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 9.7E-37 2.1E-41 263.5 10.5 186 43-238 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.3 2.3E-13 4.9E-18 124.7 1.6 51 188-238 289-343 (349)
3 KOG4172 Predicted E3 ubiquitin 99.2 3.9E-13 8.5E-18 92.2 -3.7 49 191-239 9-62 (62)
4 PF13920 zf-C3HC4_3: Zinc fing 99.2 5.5E-12 1.2E-16 85.3 1.5 43 190-232 3-49 (50)
5 KOG4275 Predicted E3 ubiquitin 99.0 3.2E-11 7E-16 108.1 -1.5 51 189-239 300-350 (350)
6 KOG1571 Predicted E3 ubiquitin 98.9 1.7E-10 3.8E-15 106.0 -0.1 50 190-239 306-355 (355)
7 KOG0978 E3 ubiquitin ligase in 98.6 6E-07 1.3E-11 89.5 12.4 50 187-237 641-697 (698)
8 PF13923 zf-C3HC4_2: Zinc fing 98.0 2.5E-06 5.4E-11 54.6 0.9 34 192-226 1-39 (39)
9 PF14634 zf-RING_5: zinc-RING 98.0 3.8E-06 8.2E-11 55.3 1.7 36 192-228 2-44 (44)
10 PLN03208 E3 ubiquitin-protein 97.9 7E-06 1.5E-10 70.5 3.0 48 189-237 18-87 (193)
11 PHA02929 N1R/p28-like protein; 97.8 1.2E-05 2.6E-10 71.3 3.1 47 189-236 174-232 (238)
12 KOG0823 Predicted E3 ubiquitin 97.7 1.9E-05 4.1E-10 69.2 2.6 49 188-237 46-103 (230)
13 PF13639 zf-RING_2: Ring finge 97.7 1.1E-05 2.4E-10 52.7 0.8 36 191-227 2-44 (44)
14 KOG1785 Tyrosine kinase negati 97.7 1.2E-05 2.7E-10 75.3 0.9 48 189-237 369-422 (563)
15 KOG0317 Predicted E3 ubiquitin 97.6 2.1E-05 4.5E-10 70.9 1.3 48 188-236 238-289 (293)
16 smart00184 RING Ring finger. E 97.6 3.8E-05 8.3E-10 47.0 2.0 34 192-226 1-39 (39)
17 cd00162 RING RING-finger (Real 97.6 4.2E-05 9E-10 48.5 1.9 39 191-230 1-45 (45)
18 KOG0320 Predicted E3 ubiquitin 97.5 3.1E-05 6.8E-10 65.5 0.6 49 189-238 131-187 (187)
19 PF00097 zf-C3HC4: Zinc finger 97.5 4.3E-05 9.2E-10 49.0 0.9 34 192-226 1-41 (41)
20 TIGR00599 rad18 DNA repair pro 97.4 6.7E-05 1.5E-09 71.0 1.6 48 184-232 21-72 (397)
21 PF14447 Prok-RING_4: Prokaryo 97.4 8.3E-05 1.8E-09 51.4 1.4 43 189-232 7-51 (55)
22 PF15227 zf-C3HC4_4: zinc fing 97.2 0.00015 3.2E-09 47.4 1.4 34 192-226 1-42 (42)
23 KOG2164 Predicted E3 ubiquitin 97.2 0.00016 3.5E-09 69.7 1.9 48 189-237 186-244 (513)
24 PHA02926 zinc finger-like prot 97.1 0.00013 2.9E-09 63.9 0.4 47 188-235 169-234 (242)
25 COG5574 PEX10 RING-finger-cont 96.9 0.00034 7.3E-09 62.6 0.8 42 189-231 215-262 (271)
26 smart00504 Ubox Modified RING 96.9 0.00067 1.4E-08 47.0 2.1 42 190-232 2-47 (63)
27 PF13445 zf-RING_UBOX: RING-ty 96.9 0.00036 7.8E-09 46.0 0.6 27 192-220 1-31 (43)
28 KOG2177 Predicted E3 ubiquitin 96.8 0.00035 7.7E-09 60.1 0.4 40 188-228 12-55 (386)
29 KOG4692 Predicted E3 ubiquitin 96.6 0.0017 3.8E-08 60.4 3.7 42 190-232 423-468 (489)
30 COG5236 Uncharacterized conser 96.6 0.0014 3.1E-08 60.8 2.8 46 188-234 60-111 (493)
31 COG5432 RAD18 RING-finger-cont 96.6 0.00079 1.7E-08 61.2 0.9 45 186-231 22-70 (391)
32 KOG0287 Postreplication repair 96.4 0.0008 1.7E-08 62.3 -0.4 47 186-233 20-70 (442)
33 COG5540 RING-finger-containing 95.8 0.0047 1E-07 56.5 2.0 43 188-231 322-372 (374)
34 KOG2879 Predicted E3 ubiquitin 95.6 0.0094 2E-07 53.8 3.0 44 187-231 237-287 (298)
35 PF14835 zf-RING_6: zf-RING of 95.6 0.0052 1.1E-07 43.9 1.1 43 188-231 6-51 (65)
36 PF12678 zf-rbx1: RING-H2 zinc 95.2 0.0085 1.9E-07 43.6 1.2 27 200-227 43-73 (73)
37 KOG1103 Predicted coiled-coil 94.9 0.44 9.6E-06 44.8 11.6 39 40-78 136-184 (561)
38 KOG0802 E3 ubiquitin ligase [P 94.7 0.0098 2.1E-07 58.6 0.5 41 189-230 291-340 (543)
39 PF04641 Rtf2: Rtf2 RING-finge 94.2 0.039 8.5E-07 49.4 3.0 46 187-233 111-163 (260)
40 KOG4628 Predicted E3 ubiquitin 94.0 0.031 6.8E-07 52.2 2.1 42 191-233 231-280 (348)
41 KOG1813 Predicted E3 ubiquitin 93.9 0.02 4.3E-07 52.2 0.5 45 191-236 243-291 (313)
42 COG5243 HRD1 HRD ubiquitin lig 93.9 0.024 5.2E-07 53.3 1.1 42 188-230 286-344 (491)
43 KOG2113 Predicted RNA binding 93.5 0.062 1.3E-06 49.5 3.0 50 188-237 342-393 (394)
44 KOG4159 Predicted E3 ubiquitin 93.4 0.033 7.2E-07 53.0 1.2 45 187-232 82-130 (398)
45 COG5152 Uncharacterized conser 92.9 0.024 5.3E-07 49.1 -0.5 46 190-236 197-246 (259)
46 KOG1814 Predicted E3 ubiquitin 92.7 0.045 9.7E-07 52.0 0.9 30 189-219 184-216 (445)
47 KOG3002 Zn finger protein [Gen 92.2 0.07 1.5E-06 49.0 1.4 44 187-232 46-92 (299)
48 KOG3039 Uncharacterized conser 92.0 0.088 1.9E-06 47.1 1.8 44 188-232 220-271 (303)
49 PF09726 Macoilin: Transmembra 91.2 6.9 0.00015 40.1 14.6 52 92-143 546-597 (697)
50 PF04564 U-box: U-box domain; 90.9 0.14 3.1E-06 36.9 1.7 44 188-232 3-51 (73)
51 KOG1039 Predicted E3 ubiquitin 90.3 0.13 2.8E-06 48.2 1.3 46 188-234 160-224 (344)
52 PF04710 Pellino: Pellino; In 90.2 0.086 1.9E-06 49.9 0.0 50 189-238 328-411 (416)
53 KOG0825 PHD Zn-finger protein 89.3 0.092 2E-06 53.6 -0.6 47 188-235 122-175 (1134)
54 KOG0804 Cytoplasmic Zn-finger 87.4 21 0.00045 34.8 13.8 90 44-133 326-424 (493)
55 KOG1001 Helicase-like transcri 87.3 0.21 4.7E-06 50.6 0.6 40 190-231 455-500 (674)
56 KOG0971 Microtubule-associated 87.3 10 0.00022 39.9 12.3 99 46-145 371-502 (1243)
57 PF05290 Baculo_IE-1: Baculovi 86.8 0.23 5E-06 40.5 0.4 43 191-234 82-135 (140)
58 KOG0980 Actin-binding protein 86.6 23 0.00049 37.2 14.3 45 98-142 459-503 (980)
59 KOG2932 E3 ubiquitin ligase in 86.4 0.28 6.2E-06 45.2 0.8 43 189-232 90-135 (389)
60 KOG3091 Nuclear pore complex, 85.2 10 0.00022 37.2 10.6 21 99-119 377-397 (508)
61 KOG0828 Predicted E3 ubiquitin 84.7 0.28 6.1E-06 47.8 -0.1 46 186-232 568-635 (636)
62 COG5220 TFB3 Cdk activating ki 82.9 0.27 5.9E-06 43.9 -0.9 39 189-228 10-61 (314)
63 KOG0311 Predicted E3 ubiquitin 82.8 0.11 2.5E-06 48.5 -3.4 44 188-232 42-91 (381)
64 KOG0288 WD40 repeat protein Ti 81.5 38 0.00082 32.8 12.6 68 47-119 3-76 (459)
65 PF04216 FdhE: Protein involve 80.5 0.87 1.9E-05 41.2 1.5 48 189-237 172-228 (290)
66 PF10367 Vps39_2: Vacuolar sor 80.5 0.92 2E-05 34.1 1.4 29 189-218 78-108 (109)
67 PF14362 DUF4407: Domain of un 80.4 31 0.00068 31.1 11.6 58 64-121 108-165 (301)
68 PF00038 Filament: Intermediat 79.9 45 0.00098 30.0 14.8 58 89-146 221-282 (312)
69 PF12325 TMF_TATA_bd: TATA ele 79.7 29 0.00064 27.7 13.8 93 39-145 16-108 (120)
70 PF07412 Geminin: Geminin; In 79.4 5.7 0.00012 34.5 6.0 47 63-112 105-153 (200)
71 KOG2113 Predicted RNA binding 78.8 0.87 1.9E-05 42.2 0.9 49 188-236 135-188 (394)
72 PF14570 zf-RING_4: RING/Ubox 78.8 0.81 1.8E-05 30.9 0.5 24 206-230 19-47 (48)
73 KOG4807 F-actin binding protei 78.6 66 0.0014 31.1 13.8 73 52-124 369-447 (593)
74 KOG0297 TNF receptor-associate 78.3 1.1 2.3E-05 42.7 1.3 48 186-234 18-70 (391)
75 PF06785 UPF0242: Uncharacteri 78.1 62 0.0014 30.5 13.6 53 93-145 157-213 (401)
76 PF08614 ATG16: Autophagy prot 77.9 9.7 0.00021 32.4 7.0 24 99-122 152-175 (194)
77 TIGR01837 PHA_granule_1 poly(h 77.5 32 0.00069 27.2 9.4 64 55-118 46-116 (118)
78 COG4985 ABC-type phosphate tra 77.4 18 0.00039 32.4 8.5 18 41-58 159-176 (289)
79 KOG1941 Acetylcholine receptor 77.0 12 0.00025 36.0 7.7 145 47-229 254-414 (518)
80 PF07111 HCR: Alpha helical co 76.8 78 0.0017 32.6 13.8 22 98-119 162-183 (739)
81 COG3937 Uncharacterized conser 76.4 17 0.00036 28.6 7.2 19 41-59 15-34 (108)
82 PF01166 TSC22: TSC-22/dip/bun 76.2 4.1 9E-05 28.6 3.4 30 99-128 15-44 (59)
83 PF06005 DUF904: Protein of un 76.1 27 0.00059 25.3 8.8 21 106-126 40-60 (72)
84 PF10272 Tmpp129: Putative tra 75.7 2.2 4.7E-05 40.3 2.6 11 221-231 341-351 (358)
85 PF12329 TMF_DNA_bd: TATA elem 75.6 22 0.00048 25.8 7.4 56 90-145 4-59 (74)
86 PF13935 Ead_Ea22: Ead/Ea22-li 75.5 16 0.00035 29.6 7.4 15 97-111 125-139 (139)
87 smart00787 Spc7 Spc7 kinetocho 75.3 40 0.00086 31.2 10.7 13 133-145 271-283 (312)
88 KOG4657 Uncharacterized conser 74.3 64 0.0014 28.8 13.4 30 33-62 9-38 (246)
89 PF15066 CAGE1: Cancer-associa 73.9 95 0.0021 30.6 14.6 61 89-149 451-526 (527)
90 KOG1002 Nucleotide excision re 73.7 0.77 1.7E-05 45.3 -0.9 42 188-230 535-585 (791)
91 PF13874 Nup54: Nucleoporin co 73.6 36 0.00078 27.5 9.0 90 42-148 33-122 (141)
92 PF15619 Lebercilin: Ciliary p 73.2 60 0.0013 28.0 12.2 57 50-112 54-110 (194)
93 KOG4571 Activating transcripti 72.9 11 0.00024 34.5 6.3 28 99-126 256-283 (294)
94 PF07888 CALCOCO1: Calcium bin 72.8 1.1E+02 0.0023 30.7 13.6 74 63-138 173-246 (546)
95 smart00744 RINGv The RING-vari 72.7 2 4.3E-05 28.7 1.2 36 191-227 1-49 (49)
96 PRK10884 SH3 domain-containing 72.3 25 0.00055 30.6 8.2 58 60-122 99-156 (206)
97 TIGR01562 FdhE formate dehydro 71.9 15 0.00032 34.0 7.0 42 189-230 184-234 (305)
98 PRK10884 SH3 domain-containing 71.8 67 0.0015 27.9 10.9 24 99-122 140-163 (206)
99 PF15397 DUF4618: Domain of un 71.6 79 0.0017 28.6 11.8 26 99-124 194-219 (258)
100 KOG3842 Adaptor protein Pellin 71.5 1.9 4.1E-05 40.1 1.1 45 188-232 340-415 (429)
101 PF08317 Spc7: Spc7 kinetochor 70.8 87 0.0019 28.8 13.6 31 40-70 112-142 (325)
102 PF03854 zf-P11: P-11 zinc fin 70.3 1.8 3.9E-05 29.3 0.5 41 191-234 4-49 (50)
103 PRK11637 AmiB activator; Provi 69.9 96 0.0021 29.5 12.4 17 41-57 42-58 (428)
104 KOG1029 Endocytic adaptor prot 69.5 89 0.0019 32.8 12.3 20 98-117 444-463 (1118)
105 PRK09039 hypothetical protein; 68.9 1E+02 0.0022 28.8 14.7 55 94-148 133-187 (343)
106 PF12240 Angiomotin_C: Angiomo 68.9 80 0.0017 27.6 12.2 78 55-141 70-165 (205)
107 PF10168 Nup88: Nuclear pore c 68.7 43 0.00093 34.5 10.2 50 99-148 601-661 (717)
108 KOG3799 Rab3 effector RIM1 and 68.2 21 0.00045 29.4 6.3 36 191-229 67-116 (169)
109 PRK15422 septal ring assembly 67.9 30 0.00065 25.8 6.5 29 99-127 40-68 (79)
110 PF04799 Fzo_mitofusin: fzo-li 67.8 33 0.00071 29.2 7.7 75 56-134 78-159 (171)
111 PF12126 DUF3583: Protein of u 67.4 61 0.0013 30.0 9.7 41 44-88 25-65 (324)
112 COG1592 Rubrerythrin [Energy p 66.8 79 0.0017 26.7 10.0 31 189-235 134-164 (166)
113 KOG0977 Nuclear envelope prote 66.5 69 0.0015 32.0 10.7 61 62-122 114-179 (546)
114 COG2433 Uncharacterized conser 66.3 43 0.00092 33.9 9.2 9 10-18 334-342 (652)
115 PF00804 Syntaxin: Syntaxin; 66.1 48 0.001 24.1 8.3 59 61-122 14-73 (103)
116 PF12128 DUF3584: Protein of u 65.6 1.8E+02 0.0039 31.8 14.6 75 44-119 715-792 (1201)
117 PF15254 CCDC14: Coiled-coil d 64.7 58 0.0013 33.9 10.0 28 92-119 530-557 (861)
118 PF12861 zf-Apc11: Anaphase-pr 64.5 4.3 9.3E-05 30.6 1.6 40 191-231 34-82 (85)
119 TIGR03752 conj_TIGR03752 integ 63.9 64 0.0014 31.7 9.8 45 44-94 64-108 (472)
120 KOG0994 Extracellular matrix g 63.8 1.9E+02 0.0041 32.0 13.6 28 95-122 1609-1636(1758)
121 KOG4797 Transcriptional regula 62.4 26 0.00057 27.7 5.6 31 99-129 68-98 (123)
122 PF11559 ADIP: Afadin- and alp 62.3 82 0.0018 25.4 9.5 13 133-145 115-127 (151)
123 PF08614 ATG16: Autophagy prot 62.1 40 0.00086 28.6 7.4 30 93-122 111-140 (194)
124 PF14775 NYD-SP28_assoc: Sperm 61.4 53 0.0012 22.9 7.3 47 61-116 12-58 (60)
125 cd00729 rubredoxin_SM Rubredox 61.3 3.2 7E-05 25.7 0.3 16 220-235 18-33 (34)
126 KOG4445 Uncharacterized conser 61.1 1.8 3.9E-05 39.9 -1.1 42 190-232 116-187 (368)
127 PLN02189 cellulose synthase 60.9 5.7 0.00012 42.2 2.3 43 189-231 34-87 (1040)
128 PF00038 Filament: Intermediat 60.8 1.3E+02 0.0027 27.1 11.9 65 58-123 22-86 (312)
129 COG5175 MOT2 Transcriptional r 59.7 3.8 8.2E-05 38.5 0.6 41 191-232 16-65 (480)
130 KOG0994 Extracellular matrix g 59.5 2.1E+02 0.0045 31.7 13.0 11 63-73 1565-1575(1758)
131 PF09731 Mitofilin: Mitochondr 58.8 1.9E+02 0.0042 28.5 12.7 29 104-132 377-405 (582)
132 PF13815 Dzip-like_N: Iguana/D 58.8 32 0.0007 27.0 5.8 34 88-121 84-117 (118)
133 PF11180 DUF2968: Protein of u 58.3 1.2E+02 0.0027 26.2 10.9 81 63-147 102-182 (192)
134 KOG0163 Myosin class VI heavy 58.2 1.4E+02 0.003 31.5 11.2 24 99-122 957-980 (1259)
135 KOG0717 Molecular chaperone (D 57.1 2.1E+02 0.0044 28.3 12.5 34 55-88 183-216 (508)
136 TIGR03319 YmdA_YtgF conserved 56.8 2.1E+02 0.0045 28.3 13.9 6 202-207 246-251 (514)
137 PRK02119 hypothetical protein; 56.5 74 0.0016 23.0 7.5 46 103-148 7-52 (73)
138 PF10174 Cast: RIM-binding pro 56.4 2.6E+02 0.0056 29.3 13.7 84 60-145 321-404 (775)
139 PRK04406 hypothetical protein; 56.0 77 0.0017 23.1 7.9 47 102-148 8-54 (75)
140 smart00338 BRLZ basic region l 55.4 67 0.0014 22.2 7.7 28 97-124 32-59 (65)
141 PRK12704 phosphodiesterase; Pr 55.2 2.2E+02 0.0048 28.2 14.0 6 201-206 251-256 (520)
142 PRK10920 putative uroporphyrin 55.2 1.2E+02 0.0025 29.1 9.9 84 40-125 50-134 (390)
143 PF10205 KLRAQ: Predicted coil 54.8 1E+02 0.0022 24.1 8.4 62 59-122 10-71 (102)
144 PF10083 DUF2321: Uncharacteri 54.8 4 8.7E-05 34.1 -0.0 25 212-236 30-55 (158)
145 TIGR00414 serS seryl-tRNA synt 54.1 2.1E+02 0.0045 27.5 12.2 37 84-120 55-91 (418)
146 KOG1029 Endocytic adaptor prot 54.0 3E+02 0.0064 29.2 14.1 22 99-121 394-415 (1118)
147 PF12718 Tropomyosin_1: Tropom 53.9 1.2E+02 0.0026 24.7 14.0 85 60-145 48-134 (143)
148 KOG4005 Transcription factor X 53.6 1.7E+02 0.0037 26.4 11.5 27 100-126 92-118 (292)
149 KOG2660 Locus-specific chromos 53.3 2.2 4.8E-05 39.6 -2.0 45 189-234 15-64 (331)
150 COG4026 Uncharacterized protei 52.5 1.8E+02 0.0038 26.2 11.4 47 99-145 157-203 (290)
151 PF06785 UPF0242: Uncharacteri 51.8 1.9E+02 0.0041 27.4 10.2 70 75-145 98-174 (401)
152 PF15070 GOLGA2L5: Putative go 51.5 2.8E+02 0.0061 28.2 12.8 13 55-67 113-125 (617)
153 PF05121 GvpK: Gas vesicle pro 51.2 51 0.0011 25.0 5.4 38 83-120 27-67 (88)
154 KOG0976 Rho/Rac1-interacting s 51.0 2.9E+02 0.0063 29.4 12.2 46 97-142 378-423 (1265)
155 COG4306 Uncharacterized protei 50.9 5.7 0.00012 32.3 0.3 25 212-236 30-55 (160)
156 PF04340 DUF484: Protein of un 50.3 54 0.0012 28.3 6.4 20 99-118 48-67 (225)
157 PF12718 Tropomyosin_1: Tropom 49.8 1.4E+02 0.0031 24.3 10.4 57 89-145 26-85 (143)
158 PRK11637 AmiB activator; Provi 49.7 2E+02 0.0043 27.4 10.6 14 99-112 97-110 (428)
159 KOG1940 Zn-finger protein [Gen 49.4 3.1 6.7E-05 37.9 -1.6 42 191-234 160-209 (276)
160 PRK00888 ftsB cell division pr 49.2 39 0.00084 26.2 4.7 35 92-126 28-62 (105)
161 cd00350 rubredoxin_like Rubred 48.6 6.2 0.00013 24.1 0.1 16 220-235 17-32 (33)
162 COG2959 HemX Uncharacterized e 48.4 2.2E+02 0.0047 27.3 10.2 83 39-125 45-132 (391)
163 PRK04863 mukB cell division pr 48.0 4.6E+02 0.0099 29.7 14.5 32 94-125 365-396 (1486)
164 KOG2483 Upstream transcription 47.6 62 0.0014 28.8 6.3 26 95-120 116-141 (232)
165 PF10267 Tmemb_cc2: Predicted 47.4 2.7E+02 0.0058 26.8 15.7 55 85-145 263-317 (395)
166 PF12180 EABR: TSG101 and ALIX 46.6 73 0.0016 20.1 5.2 33 112-144 2-34 (35)
167 KOG2391 Vacuolar sorting prote 46.5 1.7E+02 0.0038 27.6 9.2 14 60-73 213-226 (365)
168 KOG1428 Inhibitor of type V ad 46.4 6.7 0.00014 43.5 0.0 46 188-234 3485-3547(3738)
169 KOG0612 Rho-associated, coiled 46.1 3.1E+02 0.0067 30.3 12.0 53 89-145 499-551 (1317)
170 PRK00409 recombination and DNA 46.0 3E+02 0.0065 28.7 11.9 12 48-59 511-522 (782)
171 smart00503 SynN Syntaxin N-ter 46.0 1.3E+02 0.0027 22.6 9.9 82 62-147 16-103 (117)
172 PF05883 Baculo_RING: Baculovi 45.9 6.4 0.00014 32.1 -0.1 32 189-220 26-65 (134)
173 KOG0250 DNA repair protein RAD 45.6 4.4E+02 0.0094 28.7 14.5 67 79-145 378-455 (1074)
174 PF11544 Spc42p: Spindle pole 45.3 1.2E+02 0.0027 22.3 6.6 34 88-121 9-42 (76)
175 PF04728 LPP: Lipoprotein leuc 44.7 1.1E+02 0.0023 21.4 7.1 45 99-143 4-48 (56)
176 PRK10698 phage shock protein P 44.6 2.1E+02 0.0047 24.9 10.3 63 60-123 119-184 (222)
177 KOG3113 Uncharacterized conser 44.5 16 0.00034 33.2 2.0 48 188-236 110-163 (293)
178 PF09728 Taxilin: Myosin-like 44.4 2.6E+02 0.0056 25.8 13.5 58 89-146 119-180 (309)
179 TIGR01010 BexC_CtrB_KpsE polys 44.2 2.3E+02 0.0051 26.0 10.0 18 58-75 174-191 (362)
180 cd08313 Death_TNFR1 Death doma 43.8 54 0.0012 24.2 4.5 55 88-145 16-70 (80)
181 PF09755 DUF2046: Uncharacteri 43.8 2.7E+02 0.0059 25.9 14.4 59 89-147 82-149 (310)
182 PF04102 SlyX: SlyX; InterPro 43.7 1.2E+02 0.0025 21.6 6.9 42 101-149 7-48 (69)
183 PF05266 DUF724: Protein of un 43.6 2.1E+02 0.0046 24.5 11.9 46 93-145 126-171 (190)
184 PF11793 FANCL_C: FANCL C-term 43.5 7.8 0.00017 27.7 0.0 12 221-232 56-67 (70)
185 smart00502 BBC B-Box C-termina 43.5 1.4E+02 0.003 22.3 10.3 28 47-74 32-59 (127)
186 PRK14714 DNA polymerase II lar 43.3 18 0.0004 39.4 2.7 46 189-235 667-724 (1337)
187 KOG0977 Nuclear envelope prote 43.2 3.6E+02 0.0078 27.1 12.5 61 59-119 118-190 (546)
188 PF07888 CALCOCO1: Calcium bin 43.1 3.6E+02 0.0078 27.1 14.7 16 91-106 220-235 (546)
189 KOG3161 Predicted E3 ubiquitin 43.0 6.9 0.00015 39.7 -0.5 39 189-229 11-55 (861)
190 PRK00888 ftsB cell division pr 42.5 58 0.0013 25.2 4.8 25 95-119 38-62 (105)
191 KOG1734 Predicted RING-contain 42.4 9.4 0.0002 34.9 0.4 44 188-232 223-282 (328)
192 PF14282 FlxA: FlxA-like prote 42.3 1.4E+02 0.003 23.0 6.9 52 97-148 18-73 (106)
193 PF06657 Cep57_MT_bd: Centroso 42.2 1.4E+02 0.003 22.0 6.5 21 38-58 9-29 (79)
194 PRK00286 xseA exodeoxyribonucl 41.6 3.2E+02 0.0069 26.0 13.1 26 78-103 314-339 (438)
195 PRK01885 greB transcription el 41.3 1.2E+02 0.0026 25.1 6.8 21 98-118 47-67 (157)
196 KOG1815 Predicted E3 ubiquitin 41.2 17 0.00038 34.9 2.0 31 188-219 69-100 (444)
197 PF08702 Fib_alpha: Fibrinogen 41.1 2E+02 0.0043 23.6 9.7 50 42-95 21-72 (146)
198 PF12126 DUF3583: Protein of u 41.0 3E+02 0.0065 25.6 13.9 76 44-119 4-89 (324)
199 PF14916 CCDC92: Coiled-coil d 40.9 54 0.0012 23.1 3.9 29 83-111 13-41 (60)
200 PF06005 DUF904: Protein of un 40.9 1.4E+02 0.003 21.6 8.5 29 97-125 24-52 (72)
201 PF15290 Syntaphilin: Golgi-lo 40.7 3E+02 0.0065 25.4 10.4 20 7-26 6-25 (305)
202 PF02994 Transposase_22: L1 tr 40.6 81 0.0018 29.8 6.3 46 102-147 141-186 (370)
203 PF09731 Mitofilin: Mitochondr 40.4 3.7E+02 0.0081 26.5 14.3 6 48-53 282-287 (582)
204 PF10481 CENP-F_N: Cenp-F N-te 40.2 3E+02 0.0065 25.4 10.5 77 60-138 24-100 (307)
205 PRK03564 formate dehydrogenase 40.0 23 0.00051 32.8 2.5 42 188-229 186-235 (309)
206 TIGR01461 greB transcription e 39.9 1.2E+02 0.0026 25.1 6.5 22 97-118 44-65 (156)
207 KOG2068 MOT2 transcription fac 39.4 17 0.00037 33.9 1.6 44 190-234 250-301 (327)
208 PF12761 End3: Actin cytoskele 39.2 80 0.0017 27.4 5.5 26 97-122 95-120 (195)
209 KOG4217 Nuclear receptors of t 39.0 16 0.00035 35.9 1.4 28 185-218 265-294 (605)
210 PF15254 CCDC14: Coiled-coil d 39.0 4.9E+02 0.011 27.4 12.9 44 42-86 433-479 (861)
211 PF12329 TMF_DNA_bd: TATA elem 39.0 1.4E+02 0.003 21.6 6.0 41 105-145 5-45 (74)
212 PRK05431 seryl-tRNA synthetase 38.9 3.6E+02 0.0078 25.9 12.0 21 100-120 68-88 (425)
213 PF13240 zinc_ribbon_2: zinc-r 38.8 12 0.00026 21.2 0.3 17 213-229 2-22 (23)
214 smart00787 Spc7 Spc7 kinetocho 38.7 3.2E+02 0.007 25.2 13.7 30 41-70 108-137 (312)
215 PF10217 DUF2039: Uncharacteri 38.4 7.3 0.00016 29.8 -0.9 40 185-229 51-90 (92)
216 COG3416 Uncharacterized protei 38.4 69 0.0015 28.3 5.0 58 63-120 13-77 (233)
217 smart00338 BRLZ basic region l 38.3 1.3E+02 0.0028 20.6 6.1 35 106-140 27-61 (65)
218 COG5219 Uncharacterized conser 38.1 12 0.00025 39.9 0.3 44 187-231 1467-1523(1525)
219 COG4357 Zinc finger domain con 38.0 17 0.00037 28.2 1.1 43 191-233 37-93 (105)
220 PF05565 Sipho_Gp157: Siphovir 37.8 2.3E+02 0.005 23.4 8.4 52 98-149 40-91 (162)
221 PF07975 C1_4: TFIIH C1-like d 37.8 18 0.0004 24.6 1.1 16 212-227 31-50 (51)
222 PF11932 DUF3450: Protein of u 37.8 2.4E+02 0.0052 24.7 8.6 21 99-119 64-84 (251)
223 KOG4673 Transcription factor T 37.7 4.3E+02 0.0093 27.7 11.0 52 89-143 475-526 (961)
224 COG2433 Uncharacterized conser 37.6 2.6E+02 0.0057 28.5 9.5 29 90-118 473-501 (652)
225 PF06008 Laminin_I: Laminin Do 37.5 2.9E+02 0.0063 24.4 11.6 56 79-138 159-214 (264)
226 PLN02436 cellulose synthase A 37.4 23 0.00051 38.0 2.3 43 189-231 36-89 (1094)
227 TIGR01069 mutS2 MutS2 family p 37.2 3.8E+02 0.0081 28.0 11.0 11 49-59 507-517 (771)
228 PF07889 DUF1664: Protein of u 37.1 2.2E+02 0.0048 22.9 9.1 79 55-145 44-122 (126)
229 PRK10963 hypothetical protein; 37.1 83 0.0018 27.4 5.5 20 99-118 45-64 (223)
230 PF10571 UPF0547: Uncharacteri 36.7 21 0.00044 20.9 1.1 17 213-229 3-23 (26)
231 PF04423 Rad50_zn_hook: Rad50 36.5 13 0.00029 25.0 0.3 10 222-231 22-31 (54)
232 COG1196 Smc Chromosome segrega 36.1 6E+02 0.013 27.7 14.4 32 91-122 260-291 (1163)
233 cd00730 rubredoxin Rubredoxin; 35.5 15 0.00032 24.9 0.4 12 222-233 36-47 (50)
234 KOG4218 Nuclear hormone recept 35.3 17 0.00036 34.4 0.8 24 191-218 17-40 (475)
235 PF09726 Macoilin: Transmembra 34.7 5.4E+02 0.012 26.6 13.7 27 124-150 634-660 (697)
236 PF15070 GOLGA2L5: Putative go 34.6 5.1E+02 0.011 26.4 13.3 90 39-133 158-255 (617)
237 KOG4673 Transcription factor T 34.4 5.7E+02 0.012 26.8 14.1 63 79-141 408-482 (961)
238 PF10212 TTKRSYEDQ: Predicted 34.3 3.9E+02 0.0084 26.7 10.0 30 100-129 304-333 (518)
239 PF14193 DUF4315: Domain of un 34.0 1.4E+02 0.0031 22.3 5.5 24 97-120 7-30 (83)
240 PF14569 zf-UDP: Zinc-binding 33.9 17 0.00037 27.0 0.5 43 189-231 9-62 (80)
241 PLN03188 kinesin-12 family pro 33.6 7.2E+02 0.016 27.8 14.5 26 98-123 1173-1198(1320)
242 PF04977 DivIC: Septum formati 33.4 95 0.0021 21.7 4.4 24 99-122 25-48 (80)
243 KOG4286 Dystrophin-like protei 33.4 6.1E+02 0.013 26.9 11.5 87 42-129 109-223 (966)
244 cd00179 SynN Syntaxin N-termin 33.4 2.4E+02 0.0052 22.2 10.7 20 101-120 51-70 (151)
245 PF10186 Atg14: UV radiation r 33.1 3.3E+02 0.0072 23.7 14.7 16 41-56 15-30 (302)
246 PF13747 DUF4164: Domain of un 32.9 2.1E+02 0.0046 21.4 10.1 48 94-144 35-82 (89)
247 PF10764 Gin: Inhibitor of sig 32.6 22 0.00048 23.6 0.9 28 191-220 1-28 (46)
248 PF07191 zinc-ribbons_6: zinc- 32.5 10 0.00022 27.6 -0.9 36 191-231 3-41 (70)
249 PF10224 DUF2205: Predicted co 32.5 2.1E+02 0.0045 21.2 8.0 31 92-122 38-68 (80)
250 PF08317 Spc7: Spc7 kinetochor 32.2 4E+02 0.0087 24.4 14.6 10 106-115 185-194 (325)
251 PF04380 BMFP: Membrane fusoge 32.1 2E+02 0.0044 20.9 6.8 20 99-118 58-77 (79)
252 PF12709 Kinetocho_Slk19: Cent 32.0 2.3E+02 0.0049 21.5 10.6 75 48-122 6-80 (87)
253 PRK14127 cell division protein 32.0 2.4E+02 0.0053 22.1 6.8 15 53-67 26-40 (109)
254 PF14257 DUF4349: Domain of un 31.5 96 0.0021 27.4 5.0 27 90-116 168-194 (262)
255 PF11500 Cut12: Spindle pole b 31.5 3.1E+02 0.0067 22.9 8.6 25 95-119 102-126 (152)
256 PF09403 FadA: Adhesion protei 31.4 2.8E+02 0.006 22.3 12.1 61 42-122 23-83 (126)
257 PRK06975 bifunctional uroporph 31.4 3.8E+02 0.0082 27.3 9.8 76 48-125 344-419 (656)
258 PRK04023 DNA polymerase II lar 31.3 38 0.00083 36.3 2.7 47 188-235 625-678 (1121)
259 KOG0249 LAR-interacting protei 31.1 3.3E+02 0.0071 28.6 9.0 18 60-77 169-186 (916)
260 KOG1666 V-SNARE [Intracellular 31.1 3.8E+02 0.0081 23.7 8.6 72 75-146 9-92 (220)
261 PF12999 PRKCSH-like: Glucosid 31.0 2.1E+02 0.0046 24.4 6.7 19 104-122 152-170 (176)
262 PRK13447 F0F1 ATP synthase sub 30.7 1E+02 0.0022 25.0 4.6 38 54-93 87-124 (136)
263 PRK15396 murein lipoprotein; P 30.7 2.2E+02 0.0048 21.0 6.6 46 99-144 26-71 (78)
264 PRK11448 hsdR type I restricti 30.4 1.4E+02 0.003 32.6 6.8 21 102-122 188-208 (1123)
265 PRK13729 conjugal transfer pil 30.1 1.8E+02 0.0039 28.7 6.9 26 98-123 90-115 (475)
266 COG4942 Membrane-bound metallo 30.0 5.3E+02 0.011 25.1 12.0 29 54-82 162-192 (420)
267 PLN02678 seryl-tRNA synthetase 29.9 5.3E+02 0.012 25.1 11.5 72 42-119 16-92 (448)
268 smart00734 ZnF_Rad18 Rad18-lik 29.9 25 0.00054 20.4 0.7 10 221-230 2-11 (26)
269 PF13248 zf-ribbon_3: zinc-rib 29.9 20 0.00044 20.6 0.3 9 221-229 17-25 (26)
270 PRK00409 recombination and DNA 29.5 5.6E+02 0.012 26.8 10.8 12 62-73 517-528 (782)
271 PF04859 DUF641: Plant protein 29.4 1.7E+02 0.0036 23.8 5.6 22 91-112 101-122 (131)
272 COG5222 Uncharacterized conser 29.0 22 0.00048 33.0 0.5 38 190-228 275-318 (427)
273 cd07665 BAR_SNX1 The Bin/Amphi 28.8 4.1E+02 0.009 23.5 12.9 22 111-132 158-179 (234)
274 PF08112 ATP-synt_E_2: ATP syn 28.8 2E+02 0.0043 19.8 6.0 45 54-106 8-52 (56)
275 KOG3579 Predicted E3 ubiquitin 28.6 26 0.00056 32.3 0.8 28 190-218 269-300 (352)
276 PF04849 HAP1_N: HAP1 N-termin 28.4 4.9E+02 0.011 24.2 14.4 29 98-126 234-262 (306)
277 PF03449 GreA_GreB_N: Transcri 28.3 2.3E+02 0.005 20.4 7.7 28 91-119 40-67 (74)
278 PRK11020 hypothetical protein; 28.0 3.1E+02 0.0068 21.9 7.8 69 44-131 3-72 (118)
279 PF06906 DUF1272: Protein of u 27.9 29 0.00063 24.2 0.8 19 212-230 31-51 (57)
280 PF10186 Atg14: UV radiation r 27.9 4.1E+02 0.0089 23.2 15.0 14 47-60 35-48 (302)
281 cd08779 Death_PIDD Death Domai 27.9 1.9E+02 0.0041 21.3 5.3 53 89-144 19-72 (86)
282 PF00170 bZIP_1: bZIP transcri 27.8 2E+02 0.0044 19.6 6.5 19 107-125 28-46 (64)
283 PF08172 CASP_C: CASP C termin 27.7 4.4E+02 0.0096 23.5 9.5 20 99-118 115-134 (248)
284 PRK05892 nucleoside diphosphat 27.4 3.4E+02 0.0073 22.4 7.3 25 93-118 43-67 (158)
285 PF02403 Seryl_tRNA_N: Seryl-t 27.3 2.7E+02 0.0059 20.9 9.3 9 54-62 27-35 (108)
286 PF12128 DUF3584: Protein of u 27.1 8.6E+02 0.019 26.6 14.7 6 136-141 774-779 (1201)
287 PRK04325 hypothetical protein; 26.9 2.5E+02 0.0053 20.3 7.3 40 100-146 11-50 (74)
288 KOG0006 E3 ubiquitin-protein l 26.9 32 0.0007 32.2 1.2 29 189-218 221-251 (446)
289 PF02891 zf-MIZ: MIZ/SP-RING z 26.8 25 0.00054 23.5 0.4 38 191-229 4-50 (50)
290 KOG3976 Mitochondrial F1F0-ATP 26.8 4.7E+02 0.01 23.5 12.1 89 49-137 113-208 (247)
291 PF07716 bZIP_2: Basic region 26.8 2E+02 0.0043 19.1 6.9 23 97-119 31-53 (54)
292 KOG2169 Zn-finger transcriptio 26.7 35 0.00075 34.6 1.5 40 187-231 304-356 (636)
293 TIGR01462 greA transcription e 26.5 2.1E+02 0.0046 23.2 5.9 21 99-119 43-63 (151)
294 PF05384 DegS: Sensor protein 26.5 3.8E+02 0.0083 22.4 12.8 43 103-145 103-145 (159)
295 PF13118 DUF3972: Protein of u 26.4 2.2E+02 0.0049 23.0 5.8 47 91-144 78-124 (126)
296 PF13851 GAS: Growth-arrest sp 26.4 4.2E+02 0.009 22.7 11.6 38 89-126 91-128 (201)
297 PHA02825 LAP/PHD finger-like p 26.3 37 0.0008 28.6 1.3 43 188-231 7-59 (162)
298 PF07544 Med9: RNA polymerase 26.3 2.1E+02 0.0046 21.0 5.3 50 63-118 30-79 (83)
299 KOG4643 Uncharacterized coiled 26.3 8.9E+02 0.019 26.5 13.3 72 55-126 371-450 (1195)
300 KOG2129 Uncharacterized conser 26.3 6.1E+02 0.013 24.9 9.5 30 58-87 257-286 (552)
301 PF04508 Pox_A_type_inc: Viral 26.0 87 0.0019 17.9 2.4 17 99-115 2-18 (23)
302 PF02403 Seryl_tRNA_N: Seryl-t 25.9 2.9E+02 0.0062 20.7 8.5 25 94-118 39-63 (108)
303 COG1196 Smc Chromosome segrega 25.7 9E+02 0.019 26.4 14.2 16 99-114 829-844 (1163)
304 COG3809 Uncharacterized protei 25.4 28 0.0006 26.0 0.4 10 220-229 21-30 (88)
305 PF12773 DZR: Double zinc ribb 25.4 37 0.0008 22.1 1.0 12 189-200 12-23 (50)
306 PF05597 Phasin: Poly(hydroxya 25.4 3.7E+02 0.0079 21.8 9.9 19 99-117 110-128 (132)
307 cd08784 Death_DRs Death Domain 25.3 1.5E+02 0.0033 21.4 4.4 54 88-145 16-69 (79)
308 PRK14127 cell division protein 25.1 1.9E+02 0.0041 22.7 5.1 30 99-128 38-67 (109)
309 PLN03188 kinesin-12 family pro 25.1 8.1E+02 0.018 27.4 11.1 50 89-141 1202-1251(1320)
310 PF07800 DUF1644: Protein of u 25.1 38 0.00082 28.5 1.2 16 221-236 81-96 (162)
311 PF07334 IFP_35_N: Interferon- 25.0 1.4E+02 0.003 22.0 4.0 24 100-123 2-25 (76)
312 PF06657 Cep57_MT_bd: Centroso 25.0 2.8E+02 0.006 20.3 5.7 50 40-89 18-70 (79)
313 PF07106 TBPIP: Tat binding pr 24.9 2.6E+02 0.0057 22.9 6.3 26 97-122 78-103 (169)
314 PF09538 FYDLN_acid: Protein o 24.8 34 0.00073 26.8 0.8 12 221-232 27-38 (108)
315 PF06705 SF-assemblin: SF-asse 24.8 4.7E+02 0.01 22.8 13.9 34 39-72 16-52 (247)
316 PLN02320 seryl-tRNA synthetase 24.7 7E+02 0.015 24.8 11.0 20 100-119 132-151 (502)
317 PF08172 CASP_C: CASP C termin 24.7 2.7E+02 0.006 24.8 6.7 26 100-125 88-113 (248)
318 PRK13729 conjugal transfer pil 24.7 4.3E+02 0.0094 26.1 8.4 40 64-105 79-118 (475)
319 KOG1916 Nuclear protein, conta 24.5 9.4E+02 0.02 26.2 12.8 20 43-62 880-899 (1283)
320 PF07464 ApoLp-III: Apolipopho 24.5 2E+02 0.0043 24.0 5.4 34 108-141 84-118 (155)
321 PF08581 Tup_N: Tup N-terminal 24.5 2.9E+02 0.0063 20.3 10.4 39 97-145 38-76 (79)
322 KOG4362 Transcriptional regula 24.4 18 0.0004 36.9 -0.9 43 188-231 20-69 (684)
323 KOG2114 Vacuolar assembly/sort 24.2 2.1E+02 0.0046 30.3 6.5 42 191-233 842-885 (933)
324 PF02601 Exonuc_VII_L: Exonucl 24.2 5.3E+02 0.012 23.2 11.6 36 42-77 146-181 (319)
325 PF04111 APG6: Autophagy prote 24.0 5.7E+02 0.012 23.5 11.0 45 84-128 57-102 (314)
326 COG1579 Zn-ribbon protein, pos 23.8 5.3E+02 0.011 23.1 11.2 90 59-148 57-146 (239)
327 KOG0288 WD40 repeat protein Ti 23.7 3.6E+02 0.0078 26.3 7.5 27 98-124 41-67 (459)
328 PF08549 SWI-SNF_Ssr4: Fungal 23.7 3.6E+02 0.0079 27.7 7.9 71 35-115 352-429 (669)
329 PRK10803 tol-pal system protei 23.7 1.7E+02 0.0036 26.2 5.2 35 43-78 58-92 (263)
330 PRK02224 chromosome segregatio 23.4 8.4E+02 0.018 25.2 14.8 45 93-137 525-569 (880)
331 smart00834 CxxC_CXXC_SSSS Puta 23.3 34 0.00073 21.1 0.5 12 220-231 26-37 (41)
332 KOG2817 Predicted E3 ubiquitin 23.2 39 0.00086 32.3 1.1 43 188-231 333-385 (394)
333 PRK11519 tyrosine kinase; Prov 23.0 8.2E+02 0.018 25.0 12.4 16 58-73 271-286 (719)
334 KOG3119 Basic region leucine z 23.0 2.2E+02 0.0048 25.6 5.8 18 108-125 218-235 (269)
335 PF00301 Rubredoxin: Rubredoxi 22.6 43 0.00093 22.3 0.8 12 187-198 32-43 (47)
336 PF03172 Sp100: Sp100 domain; 22.4 3.8E+02 0.0083 20.9 6.4 49 41-89 3-70 (103)
337 TIGR03495 phage_LysB phage lys 22.3 4.3E+02 0.0094 21.5 10.1 50 96-145 45-94 (135)
338 PF12999 PRKCSH-like: Glucosid 22.3 4E+02 0.0086 22.8 6.8 20 101-120 156-175 (176)
339 KOG3433 Protein involved in me 22.2 3.8E+02 0.0083 23.2 6.7 53 63-118 83-136 (203)
340 TIGR02231 conserved hypothetic 22.2 7.4E+02 0.016 24.1 10.5 46 100-145 126-171 (525)
341 PRK01343 zinc-binding protein; 22.2 41 0.00089 23.5 0.7 9 222-230 11-19 (57)
342 PHA01750 hypothetical protein 22.1 2.8E+02 0.0061 20.1 4.9 22 55-76 36-57 (75)
343 PF08202 MIS13: Mis12-Mtw1 pro 22.1 1E+02 0.0022 28.2 3.5 25 104-128 163-187 (301)
344 PF08549 SWI-SNF_Ssr4: Fungal 22.1 2E+02 0.0043 29.6 5.7 37 83-119 363-399 (669)
345 KOG0996 Structural maintenance 22.0 1.1E+03 0.024 26.2 13.6 55 89-143 519-573 (1293)
346 PRK14140 heat shock protein Gr 21.8 2.4E+02 0.0053 24.3 5.6 20 54-74 38-57 (191)
347 PF12675 DUF3795: Protein of u 21.7 49 0.0011 24.0 1.1 25 204-230 2-44 (78)
348 KOG2391 Vacuolar sorting prote 21.6 7E+02 0.015 23.7 9.1 25 54-78 218-242 (365)
349 PHA03248 DNA packaging tegumen 21.6 2.9E+02 0.0064 27.9 6.8 48 66-113 53-107 (583)
350 PRK00295 hypothetical protein; 21.6 3E+02 0.0066 19.5 7.0 40 100-146 7-46 (68)
351 PF05008 V-SNARE: Vesicle tran 21.4 3E+02 0.0065 19.3 9.6 30 95-124 22-51 (79)
352 PF07227 DUF1423: Protein of u 21.4 3.3E+02 0.0071 26.7 6.8 33 107-139 352-384 (446)
353 PF14169 YdjO: Cold-inducible 21.4 56 0.0012 23.0 1.3 16 221-236 40-55 (59)
354 PF00769 ERM: Ezrin/radixin/mo 21.3 5.8E+02 0.012 22.6 13.9 35 99-133 83-117 (246)
355 KOG3564 GTPase-activating prot 21.2 8.4E+02 0.018 24.4 10.7 18 60-77 27-44 (604)
356 KOG4643 Uncharacterized coiled 21.1 4.9E+02 0.011 28.3 8.4 44 102-145 202-245 (1195)
357 PF09755 DUF2046: Uncharacteri 21.1 6.8E+02 0.015 23.3 15.2 8 138-145 168-175 (310)
358 KOG2807 RNA polymerase II tran 21.1 52 0.0011 30.9 1.4 38 190-228 331-375 (378)
359 TIGR00595 priA primosomal prot 21.0 48 0.001 32.5 1.2 18 212-229 242-262 (505)
360 PRK12496 hypothetical protein; 21.0 42 0.00091 28.0 0.7 11 221-231 144-154 (164)
361 KOG4343 bZIP transcription fac 21.0 2.6E+02 0.0056 28.2 6.1 36 88-123 306-341 (655)
362 PHA02562 46 endonuclease subun 20.8 7.7E+02 0.017 23.8 13.8 33 92-124 214-246 (562)
363 PRK00398 rpoP DNA-directed RNA 20.7 31 0.00067 22.3 -0.1 11 221-231 22-32 (46)
364 KOG4787 Uncharacterized conser 20.6 8.5E+02 0.018 25.1 9.6 48 91-138 480-527 (852)
365 PF06246 Isy1: Isy1-like splic 20.5 3.6E+02 0.0078 24.3 6.6 33 90-122 70-102 (255)
366 PF10886 DUF2685: Protein of u 20.4 49 0.0011 22.9 0.8 16 221-236 2-17 (54)
367 COG2093 DNA-directed RNA polym 20.4 44 0.00096 23.8 0.6 18 212-229 6-27 (64)
368 KOG0826 Predicted E3 ubiquitin 20.4 44 0.00096 31.3 0.8 43 188-230 299-345 (357)
369 PF04156 IncA: IncA protein; 20.3 4.9E+02 0.011 21.4 13.3 20 99-118 131-150 (191)
370 PRK09841 cryptic autophosphory 20.3 9.4E+02 0.02 24.6 12.7 16 58-73 271-286 (726)
371 PF04977 DivIC: Septum formati 20.2 2E+02 0.0043 20.0 4.1 25 93-117 26-50 (80)
372 TIGR00375 conserved hypothetic 20.1 38 0.00083 32.2 0.3 25 209-234 239-272 (374)
373 PRK06342 transcription elongat 20.1 2.3E+02 0.005 23.6 4.9 10 49-58 37-46 (160)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-37 Score=263.53 Aligned_cols=186 Identities=38% Similarity=0.681 Sum_probs=164.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 43 NLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 43 ~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
++.+++++|..+||+|+..|.++||..+.+.++++++.++.++|+.+.+++++|+.||++++++|++|+++++++.+|++
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHHHhHHHHHHhc----c--cccccCCCCCcccchhh-hcccccccccCCCCCCCCcccccccccc
Q 026366 123 SWHYKAKYNESVVNALKNNLKQAVAQG----S--LHVKEGCGDSEVDDAAS-RTNLNYLSVVDGSGNSSPMKMQMICRAC 195 (239)
Q Consensus 123 ~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~~----~--~~~~eg~g~se~dda~S-~~~~~~~~~~~~~~~~~~~~~~~~C~iC 195 (239)
.|+++|++||+.++.|+.+|+|++.+. . +.+.++.|+.+.+|+.| +.+++.. .+.....|+.|
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~----------~~~~~~~Cr~C 164 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDREADDGKSSYVDPSVD----------NFKRMRSCRKC 164 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCccccccccccccchhhh----------hhhccccceec
Confidence 999999999999999999999998874 1 12223467777777775 4433321 11122239999
Q ss_pred cccccceEEeCCCCcccccchHhcCCCCCCCcccccceEEEee
Q 026366 196 NIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAMRTASVEVYL 238 (239)
Q Consensus 196 ~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~i~~~v~v~~ 238 (239)
..++++|+|+||+|+|+|..|...+..||+|+.+++++++||+
T Consensus 165 ~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 165 GEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred CcCCceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 9999999999999999999999889999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.3e-13 Score=124.73 Aligned_cols=51 Identities=33% Similarity=0.875 Sum_probs=46.9
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC----CCCCCCcccccceEEEee
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTASVEVYL 238 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v~v~~ 238 (239)
....|+||++..+++++|||||+|+|..|+..+ ..||+||.+|...+.|++
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 355999999999999999999999999999976 679999999999999875
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.9e-13 Score=92.24 Aligned_cols=49 Identities=33% Similarity=0.850 Sum_probs=45.5
Q ss_pred ccccccccccceEEeCCCCcccccchHhcC-----CCCCCCcccccceEEEeeC
Q 026366 191 ICRACNIQEVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 191 ~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~~v~v~~S 239 (239)
.|.||++.+.+.+|+.|||+|+|..|...+ ..||+||++|...|+.|.|
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 899999999999999999999999999765 6899999999999988765
No 4
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.19 E-value=5.5e-12 Score=85.34 Aligned_cols=43 Identities=33% Similarity=0.932 Sum_probs=38.7
Q ss_pred cccccccccccceEEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 190 MICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 190 ~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
..|.||++...+++++||||+++|..|+..+ ..||+||.+|+.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4899999999999999999999999999987 999999999875
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.2e-11 Score=108.06 Aligned_cols=51 Identities=22% Similarity=0.664 Sum_probs=49.0
Q ss_pred ccccccccccccceEEeCCCCcccccchHhcCCCCCCCcccccceEEEeeC
Q 026366 189 QMICRACNIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~i~~~v~v~~S 239 (239)
...|.||++.+.+.+||||||++.|..|..+|..|||||..|...++||.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 679999999999999999999999999999999999999999999999864
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.7e-10 Score=105.97 Aligned_cols=50 Identities=30% Similarity=0.717 Sum_probs=47.6
Q ss_pred cccccccccccceEEeCCCCcccccchHhcCCCCCCCcccccceEEEeeC
Q 026366 190 MICRACNIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 190 ~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~i~~~v~v~~S 239 (239)
..|+||.+++.+++|+||||+|.|..|...+..||+||..|...+++|.|
T Consensus 306 ~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 306 DLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 48999999999999999999999999999999999999999999998865
No 7
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6e-07 Score=89.46 Aligned_cols=50 Identities=26% Similarity=0.604 Sum_probs=42.5
Q ss_pred ccccccccccccccceEEeCCCCcccccchHhc-----CCCCCCCcccccc--eEEEe
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCKDCEGL-----IGVCPVCKAMRTA--SVEVY 237 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~-----l~~CPvCr~~i~~--~v~v~ 237 (239)
+....|++|..++.++|+.-|+|+ ||..|... .++||.|.+++.. +..||
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 456699999999999999999999 99999765 4999999999875 34444
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.96 E-value=2.5e-06 Score=54.59 Aligned_cols=34 Identities=35% Similarity=0.871 Sum_probs=28.2
Q ss_pred cccccccccce-EEeCCCCcccccchHhcC----CCCCCC
Q 026366 192 CRACNIQEVSI-LLLPCRHLCLCKDCEGLI----GVCPVC 226 (239)
Q Consensus 192 C~iC~~~~~~v-lllPC~Hlc~C~~C~~~l----~~CPvC 226 (239)
|.||++...+. +++||||. +|..|.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999999997 79999999 899998653 789987
No 9
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.95 E-value=3.8e-06 Score=55.26 Aligned_cols=36 Identities=28% Similarity=0.811 Sum_probs=31.0
Q ss_pred cccccccc---cceEEeCCCCcccccchHhcCC----CCCCCcc
Q 026366 192 CRACNIQE---VSILLLPCRHLCLCKDCEGLIG----VCPVCKA 228 (239)
Q Consensus 192 C~iC~~~~---~~vlllPC~Hlc~C~~C~~~l~----~CPvCr~ 228 (239)
|.+|+... ...++++|||. +|..|...+. .||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77888776 45889999999 9999999876 9999984
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.91 E-value=7e-06 Score=70.48 Aligned_cols=48 Identities=31% Similarity=0.603 Sum_probs=39.4
Q ss_pred ccccccccccccceEEeCCCCcccccchHhc--------------------CCCCCCCcccccc--eEEEe
Q 026366 189 QMICRACNIQEVSILLLPCRHLCLCKDCEGL--------------------IGVCPVCKAMRTA--SVEVY 237 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~--------------------l~~CPvCr~~i~~--~v~v~ 237 (239)
...|.||++...+.++.||||. +|..|... ...||+|+.++.. .+.+|
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 4589999999999999999998 99999742 1479999999865 44444
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.83 E-value=1.2e-05 Score=71.35 Aligned_cols=47 Identities=23% Similarity=0.639 Sum_probs=37.3
Q ss_pred ccccccccccccc--------eEEeCCCCcccccchHhc----CCCCCCCcccccceEEE
Q 026366 189 QMICRACNIQEVS--------ILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTASVEV 236 (239)
Q Consensus 189 ~~~C~iC~~~~~~--------vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~~v~v 236 (239)
...|.||++.... .++.||+|. +|..|-.. -..||+||.++...+..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3489999986332 467789998 99999753 37999999999987765
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.9e-05 Score=69.24 Aligned_cols=49 Identities=31% Similarity=0.531 Sum_probs=40.3
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC-------CCCCCCcccccc--eEEEe
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-------GVCPVCKAMRTA--SVEVY 237 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-------~~CPvCr~~i~~--~v~v~ 237 (239)
....|-||++...+-|+-+|||| +|-.|--+. ..||||+..|.. .|.||
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 45689999999999999999999 999996542 788999988765 44444
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.71 E-value=1.1e-05 Score=52.75 Aligned_cols=36 Identities=31% Similarity=0.784 Sum_probs=29.4
Q ss_pred ccccccccc---cceEEeCCCCcccccchHhcC----CCCCCCc
Q 026366 191 ICRACNIQE---VSILLLPCRHLCLCKDCEGLI----GVCPVCK 227 (239)
Q Consensus 191 ~C~iC~~~~---~~vlllPC~Hlc~C~~C~~~l----~~CPvCr 227 (239)
.|.||++.. ..++.+||+|. +|..|.... ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 589998865 46888999998 999997653 8999997
No 14
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.68 E-value=1.2e-05 Score=75.31 Aligned_cols=48 Identities=27% Similarity=0.708 Sum_probs=41.3
Q ss_pred ccccccccccccceEEeCCCCcccccchHhc------CCCCCCCcccccceEEEe
Q 026366 189 QMICRACNIQEVSILLLPCRHLCLCKDCEGL------IGVCPVCKAMRTASVEVY 237 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~------l~~CPvCr~~i~~~v~v~ 237 (239)
-..|+||-++.++|-+-||||+ +|..|-.. -..||.||..|.++-.|.
T Consensus 369 FeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 3489999999999999999999 89999653 379999999998875553
No 15
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=2.1e-05 Score=70.95 Aligned_cols=48 Identities=23% Similarity=0.509 Sum_probs=39.5
Q ss_pred cccccccccccccceEEeCCCCcccccchHhc----CCCCCCCcccccceEEE
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTASVEV 236 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~~v~v 236 (239)
..+.|.+|.+...+--..||||+ ||-.|-.. -..||+||.++.-.-.|
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCccee
Confidence 34699999999999999999999 99999643 37899999987655443
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.60 E-value=3.8e-05 Score=46.98 Aligned_cols=34 Identities=32% Similarity=0.929 Sum_probs=29.7
Q ss_pred cccccccccceEEeCCCCcccccchHhc-----CCCCCCC
Q 026366 192 CRACNIQEVSILLLPCRHLCLCKDCEGL-----IGVCPVC 226 (239)
Q Consensus 192 C~iC~~~~~~vlllPC~Hlc~C~~C~~~-----l~~CPvC 226 (239)
|.||++.....+++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999863 3679987
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.56 E-value=4.2e-05 Score=48.53 Aligned_cols=39 Identities=31% Similarity=0.860 Sum_probs=30.2
Q ss_pred ccccccccc-cceEEeCCCCcccccchHhc-----CCCCCCCcccc
Q 026366 191 ICRACNIQE-VSILLLPCRHLCLCKDCEGL-----IGVCPVCKAMR 230 (239)
Q Consensus 191 ~C~iC~~~~-~~vlllPC~Hlc~C~~C~~~-----l~~CPvCr~~i 230 (239)
.|.+|++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488999987 44555569999 89999863 36799999753
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=3.1e-05 Score=65.47 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=38.1
Q ss_pred ccccccccccccceE--EeCCCCcccccchHhcC----CCCCCCcccccc--eEEEee
Q 026366 189 QMICRACNIQEVSIL--LLPCRHLCLCKDCEGLI----GVCPVCKAMRTA--SVEVYL 238 (239)
Q Consensus 189 ~~~C~iC~~~~~~vl--llPC~Hlc~C~~C~~~l----~~CPvCr~~i~~--~v~v~~ 238 (239)
...|.||++...-.+ ---|||+ ||..|.... .+||+|+..|+. ++.||+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 368999998766544 3689999 999998764 899999976654 666664
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.46 E-value=4.3e-05 Score=48.96 Aligned_cols=34 Identities=38% Similarity=0.895 Sum_probs=29.4
Q ss_pred cccccccccceE-EeCCCCcccccchHhcC------CCCCCC
Q 026366 192 CRACNIQEVSIL-LLPCRHLCLCKDCEGLI------GVCPVC 226 (239)
Q Consensus 192 C~iC~~~~~~vl-llPC~Hlc~C~~C~~~l------~~CPvC 226 (239)
|.||.+.....+ ++||||. +|..|.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999888887 9999999 999997653 679987
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.38 E-value=6.7e-05 Score=71.04 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=40.4
Q ss_pred CCcccccccccccccccceEEeCCCCcccccchHhc----CCCCCCCcccccc
Q 026366 184 SPMKMQMICRACNIQEVSILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTA 232 (239)
Q Consensus 184 ~~~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~ 232 (239)
..+.....|.||.+....-++.||+|. ||..|... ...||+|+..+..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 445567799999999989889999999 99999864 2579999998764
No 21
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.36 E-value=8.3e-05 Score=51.41 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=36.8
Q ss_pred ccccccccccccceEEeCCCCcccccchHh--cCCCCCCCcccccc
Q 026366 189 QMICRACNIQEVSILLLPCRHLCLCKDCEG--LIGVCPVCKAMRTA 232 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~--~l~~CPvCr~~i~~ 232 (239)
.-.|..|......-+++||+|+ +|..|.. +...||+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 3479999999888899999999 8999986 45899999998763
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.23 E-value=0.00015 Score=47.45 Aligned_cols=34 Identities=32% Similarity=0.770 Sum_probs=25.9
Q ss_pred cccccccccceEEeCCCCcccccchHhcC--------CCCCCC
Q 026366 192 CRACNIQEVSILLLPCRHLCLCKDCEGLI--------GVCPVC 226 (239)
Q Consensus 192 C~iC~~~~~~vlllPC~Hlc~C~~C~~~l--------~~CPvC 226 (239)
|.||.+-..+-+.+||||. +|..|.... -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8899999999999999999 999997653 368887
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00016 Score=69.71 Aligned_cols=48 Identities=25% Similarity=0.575 Sum_probs=40.5
Q ss_pred ccccccccccccceEEeCCCCcccccchHhc---------CCCCCCCcccccc--eEEEe
Q 026366 189 QMICRACNIQEVSILLLPCRHLCLCKDCEGL---------IGVCPVCKAMRTA--SVEVY 237 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~---------l~~CPvCr~~i~~--~v~v~ 237 (239)
...|+||++.+...++.-|||. +|..|--. ...||+|+..|.. ...|+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 5689999999999999999999 99999543 3799999999987 44444
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=97.11 E-value=0.00013 Score=63.88 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=35.8
Q ss_pred cccccccccccc---------cceEEeCCCCcccccchHhcC----------CCCCCCcccccceEE
Q 026366 188 MQMICRACNIQE---------VSILLLPCRHLCLCKDCEGLI----------GVCPVCKAMRTASVE 235 (239)
Q Consensus 188 ~~~~C~iC~~~~---------~~vlllPC~Hlc~C~~C~~~l----------~~CPvCr~~i~~~v~ 235 (239)
....|.||++.. ..-+|.||+|. ||..|-... ..||+||..+...+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 345899999863 23688899999 999996532 349999999875543
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00034 Score=62.56 Aligned_cols=42 Identities=29% Similarity=0.637 Sum_probs=36.2
Q ss_pred ccccccccccccceEEeCCCCcccccchHhc------CCCCCCCccccc
Q 026366 189 QMICRACNIQEVSILLLPCRHLCLCKDCEGL------IGVCPVCKAMRT 231 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~------l~~CPvCr~~i~ 231 (239)
...|.+|.+.+-+..-.||||+ ||-.|--. ...||+||+.+.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 4589999999999999999999 99999654 367999998754
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.85 E-value=0.00067 Score=47.01 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=35.7
Q ss_pred cccccccccccceEEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 190 MICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 190 ~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
..|.+|++-..+-++.||||. +|..|.... ..||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 379999998888899999998 899997754 689999998743
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.85 E-value=0.00036 Score=45.99 Aligned_cols=27 Identities=37% Similarity=0.958 Sum_probs=16.9
Q ss_pred cccccccccc----eEEeCCCCcccccchHhcC
Q 026366 192 CRACNIQEVS----ILLLPCRHLCLCKDCEGLI 220 (239)
Q Consensus 192 C~iC~~~~~~----vlllPC~Hlc~C~~C~~~l 220 (239)
|.||++ ..+ -++|||||. +|..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 788888 655 677899999 999998765
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00035 Score=60.06 Aligned_cols=40 Identities=33% Similarity=0.746 Sum_probs=35.0
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC----CCCCCCcc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKA 228 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~ 228 (239)
+...|.||++....-.++||+|. +|..|.... -.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 45699999998888899999999 899998764 58999993
No 29
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0017 Score=60.38 Aligned_cols=42 Identities=24% Similarity=0.631 Sum_probs=35.1
Q ss_pred cccccccccccceEEeCCCCcccccchHhc-C---CCCCCCcccccc
Q 026366 190 MICRACNIQEVSILLLPCRHLCLCKDCEGL-I---GVCPVCKAMRTA 232 (239)
Q Consensus 190 ~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~-l---~~CPvCr~~i~~ 232 (239)
..|+|||..+.+.+|-||+|. .|..|... + +.|-.|.+.+..
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 389999999999999999999 79999864 2 677777776553
No 30
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.59 E-value=0.0014 Score=60.78 Aligned_cols=46 Identities=28% Similarity=0.665 Sum_probs=39.8
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC------CCCCCCcccccceE
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI------GVCPVCKAMRTASV 234 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l------~~CPvCr~~i~~~v 234 (239)
+.+.|.||-+.-.-+.++||+|. +|..|+-++ ..||+||+.-..++
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 56799999999999999999999 899999875 79999998755443
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.57 E-value=0.00079 Score=61.17 Aligned_cols=45 Identities=24% Similarity=0.565 Sum_probs=38.6
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhcC----CCCCCCccccc
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRT 231 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~ 231 (239)
+.....|.||......-++.||||. ||.-|.... ..||+||.+..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred chhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence 3445689999999999999999999 999998753 89999998754
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.36 E-value=0.0008 Score=62.27 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=40.7
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhcC----CCCCCCcccccce
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTAS 233 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~ 233 (239)
+.+...|-||++=....++.||+|. +|.-|.... ..||.|+.+++.+
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 4466799999999999999999999 999998764 8999999887653
No 33
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0047 Score=56.53 Aligned_cols=43 Identities=26% Similarity=0.626 Sum_probs=34.2
Q ss_pred ccccccccccccc---ceEEeCCCCcccccchHhcC-----CCCCCCccccc
Q 026366 188 MQMICRACNIQEV---SILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRT 231 (239)
Q Consensus 188 ~~~~C~iC~~~~~---~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~ 231 (239)
.+-.|.||++... .++.+||.|. +=..|..+- .+||+||+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 3468999998543 3788899999 788897653 79999999874
No 34
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0094 Score=53.79 Aligned_cols=44 Identities=20% Similarity=0.493 Sum_probs=36.3
Q ss_pred ccccccccccccccc-eEEeCCCCcccccchHhcC------CCCCCCccccc
Q 026366 187 KMQMICRACNIQEVS-ILLLPCRHLCLCKDCEGLI------GVCPVCKAMRT 231 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~l------~~CPvCr~~i~ 231 (239)
+...+|++|.+.+.. .+..||||. .|..|...- -.||.|..++.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 455699999999887 677789998 899998753 38999998876
No 35
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.61 E-value=0.0052 Score=43.92 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=23.0
Q ss_pred cccccccccccccce-EEeCCCCcccccchHhcC--CCCCCCccccc
Q 026366 188 MQMICRACNIQEVSI-LLLPCRHLCLCKDCEGLI--GVCPVCKAMRT 231 (239)
Q Consensus 188 ~~~~C~iC~~~~~~v-lllPC~Hlc~C~~C~~~l--~~CPvCr~~i~ 231 (239)
....|.+|.+--... .+.-|.|. ||..|.... ..||+|+.|-.
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Paw 51 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPAW 51 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-S
T ss_pred HhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChHH
Confidence 446899999877664 57899999 999998764 78999998864
No 36
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=95.24 E-value=0.0085 Score=43.57 Aligned_cols=27 Identities=30% Similarity=0.816 Sum_probs=20.3
Q ss_pred cceEEeCCCCcccccchHhc----CCCCCCCc
Q 026366 200 VSILLLPCRHLCLCKDCEGL----IGVCPVCK 227 (239)
Q Consensus 200 ~~vlllPC~Hlc~C~~C~~~----l~~CPvCr 227 (239)
..+++.||||. +-..|-.. -..||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 44677899999 89999763 37999997
No 37
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.88 E-value=0.44 Score=44.79 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=31.1
Q ss_pred cchHHHHHHhhHHHHHHHHHHHHHH----------hHHHHHHHHHHHHH
Q 026366 40 LGDNLKLEIGRQKEEFDQYVRIQEG----------NLIKGVREMKQRHT 78 (239)
Q Consensus 40 ~~~~l~~~l~~q~~eid~~l~~q~e----------~lr~~l~e~r~r~~ 78 (239)
-||||.++|++.+..+-+-|.++.+ +|-+.|+|-|+||-
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHe 184 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHE 184 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999998888887766654 45567888888886
No 38
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.0098 Score=58.56 Aligned_cols=41 Identities=27% Similarity=0.623 Sum_probs=35.4
Q ss_pred ccccccccccccc-----eEEeCCCCcccccchHhc----CCCCCCCcccc
Q 026366 189 QMICRACNIQEVS-----ILLLPCRHLCLCKDCEGL----IGVCPVCKAMR 230 (239)
Q Consensus 189 ~~~C~iC~~~~~~-----vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i 230 (239)
...|.||.+.-.. ...+||+|. ++..|-.. ...||+||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 4589999998888 799999999 99999764 49999999844
No 39
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.16 E-value=0.039 Score=49.40 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=37.4
Q ss_pred cccccccccccc----ccceEEeCCCCcccccchHhcCC---CCCCCcccccce
Q 026366 187 KMQMICRACNIQ----EVSILLLPCRHLCLCKDCEGLIG---VCPVCKAMRTAS 233 (239)
Q Consensus 187 ~~~~~C~iC~~~----~~~vlllPC~Hlc~C~~C~~~l~---~CPvCr~~i~~~ 233 (239)
.....|+|.+.. ...|+|.||||+ ++..+...+. .||+|..++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 356789998754 456899999998 8999988775 899999998754
No 40
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.031 Score=52.22 Aligned_cols=42 Identities=29% Similarity=0.627 Sum_probs=30.9
Q ss_pred ccccccccccc---eEEeCCCCcccccchHhcC-----CCCCCCcccccce
Q 026366 191 ICRACNIQEVS---ILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTAS 233 (239)
Q Consensus 191 ~C~iC~~~~~~---vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~~ 233 (239)
.|.||.+.... +.+|||.|- +=..|...- ..||+|+..+...
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred eEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 89999985443 667999999 445665432 5699999987653
No 41
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.02 Score=52.19 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=39.6
Q ss_pred ccccccccccceEEeCCCCcccccchHhcC----CCCCCCcccccceEEE
Q 026366 191 ICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTASVEV 236 (239)
Q Consensus 191 ~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v~v 236 (239)
.|-||..-..+-|.--|+|. ||..|+..- ..|++|...+.+++-+
T Consensus 243 ~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred cccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 59999999999999999999 999999753 7899999999887643
No 42
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.024 Score=53.32 Aligned_cols=42 Identities=26% Similarity=0.595 Sum_probs=29.9
Q ss_pred cccccccccccc-------------cceEEeCCCCcccccchHh----cCCCCCCCcccc
Q 026366 188 MQMICRACNIQE-------------VSILLLPCRHLCLCKDCEG----LIGVCPVCKAMR 230 (239)
Q Consensus 188 ~~~~C~iC~~~~-------------~~vlllPC~Hlc~C~~C~~----~l~~CPvCr~~i 230 (239)
+.+.|.||++.- ..--=+||||. +=-.|-. +-..||+||.|+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 456999999971 11234799998 5566654 348999999984
No 43
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=93.52 E-value=0.062 Score=49.54 Aligned_cols=50 Identities=6% Similarity=-0.055 Sum_probs=43.6
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC--CCCCCCcccccceEEEe
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI--GVCPVCKAMRTASVEVY 237 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l--~~CPvCr~~i~~~v~v~ 237 (239)
..+.|.+|.....++++.||+|.-+|.+|+..- ..||+|...+...|+|.
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i~ 393 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPIN 393 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeecC
Confidence 457999999999999999999999999999743 79999998877777663
No 44
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.033 Score=53.00 Aligned_cols=45 Identities=22% Similarity=0.629 Sum_probs=37.6
Q ss_pred ccccccccccccccceEEeCCCCcccccchHhc----CCCCCCCcccccc
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTA 232 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~ 232 (239)
.....|.||+...-..+..||||. +|..|..+ -..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 566799999998888788899999 89999443 3899999988764
No 45
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=92.90 E-value=0.024 Score=49.13 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=39.5
Q ss_pred cccccccccccceEEeCCCCcccccchHhc----CCCCCCCcccccceEEE
Q 026366 190 MICRACNIQEVSILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTASVEV 236 (239)
Q Consensus 190 ~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~~v~v 236 (239)
..|.||.....+-|...|||. ||..|+.. -..|.+|.....+.+-|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 489999999999999999999 99999975 38999999887776543
No 46
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.045 Score=51.99 Aligned_cols=30 Identities=30% Similarity=0.758 Sum_probs=25.5
Q ss_pred ccccccccccccc---eEEeCCCCcccccchHhc
Q 026366 189 QMICRACNIQEVS---ILLLPCRHLCLCKDCEGL 219 (239)
Q Consensus 189 ~~~C~iC~~~~~~---vlllPC~Hlc~C~~C~~~ 219 (239)
...|.||++.... ++|+||+|+ +|+.|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kd 216 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKD 216 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHH
Confidence 3489999997765 999999999 99999764
No 47
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.17 E-value=0.07 Score=49.03 Aligned_cols=44 Identities=23% Similarity=0.560 Sum_probs=35.7
Q ss_pred ccccccccccccccceEEeCC--CCcccccchH-hcCCCCCCCcccccc
Q 026366 187 KMQMICRACNIQEVSILLLPC--RHLCLCKDCE-GLIGVCPVCKAMRTA 232 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC--~Hlc~C~~C~-~~l~~CPvCr~~i~~ 232 (239)
.+...|+||+..-.--++ -| ||+ +|..|. .....||.||-++..
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 356799999997776555 56 799 899999 555999999999874
No 48
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=0.088 Score=47.09 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=36.9
Q ss_pred cccccccccccccc----eEEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVS----ILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~----vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
....|++|.+.-.+ ++|-||||+ +|..|..++ ..||+|..+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 45689999986554 899999999 899999886 799999887654
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.22 E-value=6.9 Score=40.11 Aligned_cols=52 Identities=23% Similarity=0.237 Sum_probs=31.4
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHH
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLK 143 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lq 143 (239)
|.++.|.|+.++++.....+|++..+..|.+.-+..-++++..+..|-..|.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4555666777777777777777777777776555542334444444444443
No 50
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=90.95 E-value=0.14 Score=36.94 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=32.4
Q ss_pred cccccccccccccceEEeCCCCcccccchHhc-----CCCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGL-----IGVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~-----l~~CPvCr~~i~~ 232 (239)
+...|.|+++--.+-+++||||. ++..|-.. -..||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35689999999999999999987 89988653 3679999988775
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=0.13 Score=48.18 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=36.4
Q ss_pred cccccccccccccceE-----E---eCCCCcccccchHhc-----------CCCCCCCcccccceE
Q 026366 188 MQMICRACNIQEVSIL-----L---LPCRHLCLCKDCEGL-----------IGVCPVCKAMRTASV 234 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vl-----l---lPC~Hlc~C~~C~~~-----------l~~CPvCr~~i~~~v 234 (239)
....|-||++.-.... | .||.|. +|..|... ...||.||.+....+
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 4569999999776665 4 789999 99999653 379999998876554
No 52
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=90.20 E-value=0.086 Score=49.95 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cccceEEeCCCCccc----ccchHhcC--------CCCCCCcccccc---eE
Q 026366 189 QMICRACNI-------------------QEVSILLLPCRHLCL----CKDCEGLI--------GVCPVCKAMRTA---SV 234 (239)
Q Consensus 189 ~~~C~iC~~-------------------~~~~vlllPC~Hlc~----C~~C~~~l--------~~CPvCr~~i~~---~v 234 (239)
.+.|++|+. .+...+|-||||+|. =.++...+ ..||.|..++.+ .|
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~v 407 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYV 407 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCce
Confidence 568888886 446678999999962 11222222 699999999876 45
Q ss_pred EEee
Q 026366 235 EVYL 238 (239)
Q Consensus 235 ~v~~ 238 (239)
+++|
T Consensus 408 rLiF 411 (416)
T PF04710_consen 408 RLIF 411 (416)
T ss_dssp ----
T ss_pred EEEE
Confidence 5543
No 53
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.28 E-value=0.092 Score=53.58 Aligned_cols=47 Identities=21% Similarity=0.375 Sum_probs=36.1
Q ss_pred cccccccccccccceEE---eCCCCcccccchHhcC----CCCCCCcccccceEE
Q 026366 188 MQMICRACNIQEVSILL---LPCRHLCLCKDCEGLI----GVCPVCKAMRTASVE 235 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vll---lPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v~ 235 (239)
....|.+|.....+-+. .||+|. ||..|.... .+||+||.-+..++.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 34578888776665333 699999 999998754 899999998877654
No 54
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.38 E-value=21 Score=34.76 Aligned_cols=90 Identities=23% Similarity=0.210 Sum_probs=65.4
Q ss_pred HHHHHhhHHHH----HHHHHHHHHHhHHHHHH----HHHH-HHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 026366 44 LKLEIGRQKEE----FDQYVRIQEGNLIKGVR----EMKQ-RHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKI 114 (239)
Q Consensus 44 l~~~l~~q~~e----id~~l~~q~e~lr~~l~----e~r~-r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl 114 (239)
|.++|+-|+.- +-.+.+.|.+.+|..++ |++. .+-...+.+.++.+.+++.+.+..+.+..++.++++|-=
T Consensus 326 l~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 326 LTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667766653 33344555555555544 4444 555677778888899999999999999999999999888
Q ss_pred HHhHHHHHhHHHHhhhhHH
Q 026366 115 KQVSMEVQSWHYKAKYNES 133 (239)
Q Consensus 115 ~ql~~E~q~Wq~~A~~~Ea 133 (239)
+.|-..-+.|+......+.
T Consensus 406 ~~l~knq~vw~~kl~~~~e 424 (493)
T KOG0804|consen 406 KKLIKNQDVWRGKLKELEE 424 (493)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 8888888899998866554
No 55
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=87.29 E-value=0.21 Score=50.62 Aligned_cols=40 Identities=25% Similarity=0.649 Sum_probs=34.3
Q ss_pred cccccccccccceEEeCCCCcccccchHhcC------CCCCCCccccc
Q 026366 190 MICRACNIQEVSILLLPCRHLCLCKDCEGLI------GVCPVCKAMRT 231 (239)
Q Consensus 190 ~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l------~~CPvCr~~i~ 231 (239)
..|.+|.+ ..+.++.||+|. +|.+|-... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 58999999 888999999999 899997643 57999997654
No 56
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.27 E-value=10 Score=39.91 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=56.5
Q ss_pred HHHhhHHHH-HHHHHHH----------------HHHhHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhhcchHH
Q 026366 46 LEIGRQKEE-FDQYVRI----------------QEGNLIKGVREMKQRH---------TYSFLSAIEKEVGRRLHGKEME 99 (239)
Q Consensus 46 ~~l~~q~~e-id~~l~~----------------q~e~lr~~l~e~r~r~---------~r~Ll~~~e~~~~~rlreke~E 99 (239)
-+|++|... =|.+|++ ..|+.+..+.|.++-. .-+.|+-+..++..-|=+ ++=
T Consensus 371 kqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA-E~M 449 (1243)
T KOG0971|consen 371 KQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGA-EEM 449 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHH
Confidence 467777776 4666642 2445555555543321 122333333334333332 455
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhH-------HHHhhhhHHHHHHHHHhHHHH
Q 026366 100 IEVMNCKNKELVEKIKQVSMEVQSW-------HYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~E~q~W-------q~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
++.+..+|.+|||||+.|..+.... ..++..|....-.||..|+++
T Consensus 450 V~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 450 VEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999988766432 234455555566677666665
No 57
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.85 E-value=0.23 Score=40.48 Aligned_cols=43 Identities=33% Similarity=0.768 Sum_probs=32.8
Q ss_pred ccccccccccce-EEeC---CCCcccccchHhcC-------CCCCCCcccccceE
Q 026366 191 ICRACNIQEVSI-LLLP---CRHLCLCKDCEGLI-------GVCPVCKAMRTASV 234 (239)
Q Consensus 191 ~C~iC~~~~~~v-lllP---C~Hlc~C~~C~~~l-------~~CPvCr~~i~~~v 234 (239)
.|-||.+...+- .|.| || +-+|..|...+ ..||+|++.+.++-
T Consensus 82 eCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 82 ECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 799999877774 4444 66 55899998765 89999999887653
No 58
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.56 E-value=23 Score=37.24 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhH
Q 026366 98 MEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNL 142 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~L 142 (239)
.-|+.+.++|.+|.+.+..+.-+...|-.+..+..-+...|+..|
T Consensus 459 ~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El 503 (980)
T KOG0980|consen 459 QSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL 503 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345567888999999999999999999888877777666666553
No 59
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=86.35 E-value=0.28 Score=45.25 Aligned_cols=43 Identities=23% Similarity=0.747 Sum_probs=30.9
Q ss_pred ccccccccccccc-eEEeCCCCcccccchHhcC--CCCCCCcccccc
Q 026366 189 QMICRACNIQEVS-ILLLPCRHLCLCKDCEGLI--GVCPVCKAMRTA 232 (239)
Q Consensus 189 ~~~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~l--~~CPvCr~~i~~ 232 (239)
...|.-|----+- -=++||.|. ||.+|+..- +.||.|--.|..
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred eEeecccCCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence 4577778543332 235799999 999999764 699999876644
No 60
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.21 E-value=10 Score=37.21 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~ 119 (239)
.|+++++|+++|..|+-++..
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788887777664
No 61
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=0.28 Score=47.82 Aligned_cols=46 Identities=24% Similarity=0.635 Sum_probs=33.4
Q ss_pred ccccccccccccc-----------------ccceEEeCCCCcccccchHhc-C----CCCCCCcccccc
Q 026366 186 MKMQMICRACNIQ-----------------EVSILLLPCRHLCLCKDCEGL-I----GVCPVCKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~-----------------~~~vlllPC~Hlc~C~~C~~~-l----~~CPvCr~~i~~ 232 (239)
+.....|+||+.. .++.++-||.|. +=..|-.. | -.||+||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3456789999872 234677899998 67778654 3 289999998753
No 62
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=82.94 E-value=0.27 Score=43.90 Aligned_cols=39 Identities=33% Similarity=0.896 Sum_probs=29.2
Q ss_pred ccccccccc-----cccceEEeC-CCCcccccchHhcC-----CCCC--CCcc
Q 026366 189 QMICRACNI-----QEVSILLLP-CRHLCLCKDCEGLI-----GVCP--VCKA 228 (239)
Q Consensus 189 ~~~C~iC~~-----~~~~vlllP-C~Hlc~C~~C~~~l-----~~CP--vCr~ 228 (239)
.+.|++|.. ...-+++-| |-|. +|.+|..++ -.|| .|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 348999976 233355568 9999 899999876 6899 6754
No 63
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.83 E-value=0.11 Score=48.46 Aligned_cols=44 Identities=27% Similarity=0.587 Sum_probs=35.1
Q ss_pred cccccccccccccc-eEEeCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVS-ILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
....|.||.+--.. +...-|.|. ||..|.+.. ..||.||....+
T Consensus 42 ~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccc
Confidence 45699999996555 455679999 999998763 899999987655
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.51 E-value=38 Score=32.75 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=40.1
Q ss_pred HHhhHHHHHHH-HHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 47 EIGRQKEEFDQ-YVRIQEGNLIKGVREMKQRHT-----YSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 47 ~l~~q~~eid~-~l~~q~e~lr~~l~e~r~r~~-----r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
+++.|+.+-|+ ++.+ +..+++.-+++. ...+.+--+++-.++.++|.||.++...|-.|.|+.-+..+
T Consensus 3 ~~~s~~s~~dqr~~~~-----~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 3 PLYSQKSENDQRLIDL-----NTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred hhhhhhhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777665 3322 222222222222 33344444556778888999999999998888766555444
No 65
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=80.53 E-value=0.87 Score=41.24 Aligned_cols=48 Identities=25% Similarity=0.447 Sum_probs=25.3
Q ss_pred ccccccccccccceEEeCC-----CCcccccchHhcC----CCCCCCcccccceEEEe
Q 026366 189 QMICRACNIQEVSILLLPC-----RHLCLCKDCEGLI----GVCPVCKAMRTASVEVY 237 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC-----~Hlc~C~~C~~~l----~~CPvCr~~i~~~v~v~ 237 (239)
...|+||++.+.-.++.+= ||+ .|..|...- ..||.|.......+..|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 3589999999988887775 455 799998642 69999999887777655
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=80.51 E-value=0.92 Score=34.12 Aligned_cols=29 Identities=21% Similarity=0.581 Sum_probs=21.1
Q ss_pred cccccccccccc--ceEEeCCCCcccccchHh
Q 026366 189 QMICRACNIQEV--SILLLPCRHLCLCKDCEG 218 (239)
Q Consensus 189 ~~~C~iC~~~~~--~vlllPC~Hlc~C~~C~~ 218 (239)
...|.+|...-. .+++.||||. +-..|..
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 347999988654 4777899988 5666653
No 67
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=80.43 E-value=31 Score=31.11 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHH
Q 026366 64 GNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 64 e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
..+...+.+.+..+.......+......++.+.+.++..+..++.+++..+.++..+.
T Consensus 108 ~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 165 (301)
T PF14362_consen 108 KEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEA 165 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666677777777777788777777777777776644
No 68
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.91 E-value=45 Score=29.95 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=44.5
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHhHH----HHHhHHHHhhhhHHHHHHHHHhHHHHH
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQVSM----EVQSWHYKAKYNESVVNALKNNLKQAV 146 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql~~----E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~ 146 (239)
+...+.....+++.+..+|..|+.++..+.. +...|+.....-|..+..|+..+++..
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 3445677778999999999999999987654 556677777777888888888876553
No 69
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.68 E-value=29 Score=27.66 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=54.1
Q ss_pred ccchHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 39 SLGDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 39 ~~~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
.+-.-|.++|.+...|+..+ +.+..++ +..|..-...|+...+. .+++.....+...|+..++.+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l-~~el~~l----~~~r~~l~~Eiv~l~~~---------~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASL-QEELARL----EAERDELREEIVKLMEE---------NEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888877777643 4444433 34455555566655554 3344444555555555555555
Q ss_pred HHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 119 MEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 119 ~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
...++--..--+....+..|++.++.+
T Consensus 82 ~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 82 QRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 555544444445556677888877766
No 70
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=79.37 E-value=5.7 Score=34.52 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=26.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhcchHHHHHHHHHHHHHHH
Q 026366 63 EGNLIKGVREMKQRHTYSFLSAIEKE--VGRRLHGKEMEIEVMNCKNKELVE 112 (239)
Q Consensus 63 ~e~lr~~l~e~r~r~~r~Ll~~~e~~--~~~rlreke~Eie~~~~~n~eLeE 112 (239)
.++||+.|.|.||. +|-.+++.- +-..+-.+++||..++..|.+|.+
T Consensus 105 se~YWk~lAE~RR~---AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 105 SENYWKELAEERRK---ALEEALEENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999984 333333321 333444455555555555544444
No 71
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=78.78 E-value=0.87 Score=42.20 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=40.0
Q ss_pred cccccccccccccceEEeCCCCcccccchHhc-----CCCCCCCcccccceEEE
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGL-----IGVCPVCKAMRTASVEV 236 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~-----l~~CPvCr~~i~~~v~v 236 (239)
....|.+|+.+..-+.+.||+|-.+|..|... ...||+|...+.....|
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 34589999999999999999999999888554 36799998877665443
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=78.77 E-value=0.81 Score=30.87 Aligned_cols=24 Identities=33% Similarity=0.813 Sum_probs=12.1
Q ss_pred CCCCcccccchHhcC-----CCCCCCcccc
Q 026366 206 PCRHLCLCKDCEGLI-----GVCPVCKAMR 230 (239)
Q Consensus 206 PC~Hlc~C~~C~~~l-----~~CPvCr~~i 230 (239)
|||+. +|..|...+ ..||.||.+.
T Consensus 19 ~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45666 899997654 6899999874
No 73
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=78.58 E-value=66 Score=31.10 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 026366 52 KEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKE------VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSW 124 (239)
Q Consensus 52 ~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~------~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~W 124 (239)
+.|-|++|...+.---.+|+-++..|...+-.-+|+. +..--|+--+|++.+.+....|-|+..|.+-|+.+.
T Consensus 369 reEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahL 447 (593)
T KOG4807|consen 369 REEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHL 447 (593)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655555555566666666666665555554 222233444578888888888888888777777543
No 74
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=78.34 E-value=1.1 Score=42.71 Aligned_cols=48 Identities=23% Similarity=0.513 Sum_probs=38.7
Q ss_pred cccccccccccccccceEE-eCCCCcccccchHhcC----CCCCCCcccccceE
Q 026366 186 MKMQMICRACNIQEVSILL-LPCRHLCLCKDCEGLI----GVCPVCKAMRTASV 234 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vll-lPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v 234 (239)
+..+..|.+|..--.+-+. ..|||. +|..|.... ..||.|+..+...-
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhh
Confidence 3456699999998888887 599999 899998753 68999988776543
No 75
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.08 E-value=62 Score=30.52 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=24.4
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhHHHHHhH----HHHhhhhHHHHHHHHHhHHHH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVSMEVQSW----HYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~~E~q~W----q~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
-+||++|-..+++..+|--....-|..|.|+- +..-....+.+..|.++.|.+
T Consensus 157 ~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 157 CGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444444455555431 222333344455555555443
No 76
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.85 E-value=9.7 Score=32.43 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
|+..+.-.+..++++++.+..|+.
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666777777776664
No 77
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=77.50 E-value=32 Score=27.17 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhcch----HHHHHHHHHHHHHHHHHHHhH
Q 026366 55 FDQYVRIQEGNLIKGVREMKQR---HTYSFLSAIEKEVGRRLHGKE----MEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 55 id~~l~~q~e~lr~~l~e~r~r---~~r~Ll~~~e~~~~~rlreke----~Eie~~~~~n~eLeErl~ql~ 118 (239)
+|.++.--.+.++..+++.+.+ +...+=..++..+.+-|...+ .||+.+..+..+|+.++..+.
T Consensus 46 ~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 46 FDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555432 223334444554444444443 588888888888888877764
No 78
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=77.41 E-value=18 Score=32.45 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.0
Q ss_pred chHHHHHHhhHHHHHHHH
Q 026366 41 GDNLKLEIGRQKEEFDQY 58 (239)
Q Consensus 41 ~~~l~~~l~~q~~eid~~ 58 (239)
||.+..||++.-.++|.+
T Consensus 159 Gd~l~~eLqkr~~~v~~l 176 (289)
T COG4985 159 GDPLERELQKRLLEVETL 176 (289)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 788999999988887754
No 79
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.05 E-value=12 Score=36.02 Aligned_cols=145 Identities=19% Similarity=0.328 Sum_probs=76.5
Q ss_pred HHhhHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 026366 47 EIGRQKEEFDQYVRIQEGNLIK--GVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSW 124 (239)
Q Consensus 47 ~l~~q~~eid~~l~~q~e~lr~--~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~W 124 (239)
.|++-+.|+|+..+--.+-|+- .+-+ |-.|+.+|..+.......|+..|-- +.+.-++.+|+-.+..+.-
T Consensus 254 DIyR~~gd~e~af~rYe~Am~~m~~~gd-rmgqv~al~g~Akc~~~~r~~~k~~-----~Crale~n~r~levA~~IG-- 325 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMGTMASLGD-RMGQVEALDGAAKCLETLRLQNKIC-----NCRALEFNTRLLEVASSIG-- 325 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhccc-----ccchhHHHHHHHHHHHHhh--
Confidence 4677777777755544333332 2222 2345566666666555555555422 1334455555544443332
Q ss_pred HHHhhhhHHHHHHHHHhHHHHHHhcccccccCCCCCcccchh----hhcccccccccCCCCCCCCcccccccccccc---
Q 026366 125 HYKAKYNESVVNALKNNLKQAVAQGSLHVKEGCGDSEVDDAA----SRTNLNYLSVVDGSGNSSPMKMQMICRACNI--- 197 (239)
Q Consensus 125 q~~A~~~Ea~~~~Lr~~Lqq~~~~~~~~~~eg~g~se~dda~----S~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~--- 197 (239)
+.-.|-.++-.|..++... |+.+.+.+. +-|+. .....|-.|.+
T Consensus 326 ------~K~~vlK~hcrla~iYrs~--------gl~d~~~~h~~ra~~~~~---------------e~~L~Cg~CGe~~G 376 (518)
T KOG1941|consen 326 ------AKLSVLKLHCRLASIYRSK--------GLQDELRAHVVRAHECVE---------------ETELYCGLCGESIG 376 (518)
T ss_pred ------hhHHHHHHHHHHHHHHHhc--------cchhHHHHHHHHHHHHHH---------------HHhhhhhhhhhhhc
Confidence 2234555666666666432 111111111 11110 12347888876
Q ss_pred -cccceEEeCCCCcccccchHhcC------CCCCCCccc
Q 026366 198 -QEVSILLLPCRHLCLCKDCEGLI------GVCPVCKAM 229 (239)
Q Consensus 198 -~~~~vlllPC~Hlc~C~~C~~~l------~~CPvCr~~ 229 (239)
++-+.=-+||-|. |=..|...+ +.||.||.-
T Consensus 377 lk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 377 LKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred CCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHH
Confidence 4555666899999 778887632 899999943
No 80
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=76.83 E-value=78 Score=32.62 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 026366 98 MEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~ 119 (239)
+++..++.++.+|++.+..+..
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~ 183 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLET 183 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888888888877765
No 81
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=76.36 E-value=17 Score=28.63 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=11.6
Q ss_pred chHHHHHHhhHHHH-HHHHH
Q 026366 41 GDNLKLEIGRQKEE-FDQYV 59 (239)
Q Consensus 41 ~~~l~~~l~~q~~e-id~~l 59 (239)
|-++.+++.-+-.+ +|.++
T Consensus 15 gaG~~a~~~ek~~klvDelV 34 (108)
T COG3937 15 GAGLAAETAEKVQKLVDELV 34 (108)
T ss_pred hccHHHHHHHHHHHHHHHHH
Confidence 33466666666666 67666
No 82
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=76.16 E-value=4.1 Score=28.56 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHh
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYKA 128 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A 128 (239)
|++-++.++.+|+++..++..||...+..+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999998665543
No 83
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.07 E-value=27 Score=25.34 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhHHHHHhHHH
Q 026366 106 KNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 106 ~n~eLeErl~ql~~E~q~Wq~ 126 (239)
.|.+|++...++..|-.+|+.
T Consensus 40 e~~~L~~en~~L~~e~~~~~~ 60 (72)
T PF06005_consen 40 ENEELKEENEQLKQERNAWQE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555566666654
No 84
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=75.70 E-value=2.2 Score=40.27 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026366 221 GVCPVCKAMRT 231 (239)
Q Consensus 221 ~~CPvCr~~i~ 231 (239)
..||.||+.+-
T Consensus 341 ~~CPtCRa~FC 351 (358)
T PF10272_consen 341 CPCPTCRAKFC 351 (358)
T ss_pred CCCCCCcccce
Confidence 58999998853
No 85
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=75.65 E-value=22 Score=25.83 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=23.4
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 90 GRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 90 ~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
.+.|++||+.|+.+......|....-+...-.---+.....+|..+..|+..++..
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777665554443333332222222222222223334444444444444433
No 86
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=75.49 E-value=16 Score=29.61 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHH
Q 026366 97 EMEIEVMNCKNKELV 111 (239)
Q Consensus 97 e~Eie~~~~~n~eLe 111 (239)
+..|..+.++++|||
T Consensus 125 e~~~~~~~~riaEle 139 (139)
T PF13935_consen 125 EGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHHHhcC
Confidence 445555666666653
No 87
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.28 E-value=40 Score=31.20 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHHH
Q 026366 133 SVVNALKNNLKQA 145 (239)
Q Consensus 133 a~~~~Lr~~Lqq~ 145 (239)
..+..|+.+++.+
T Consensus 271 ~Ei~~Lk~~~~~L 283 (312)
T smart00787 271 KEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3455566555543
No 88
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.29 E-value=64 Score=28.76 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=24.7
Q ss_pred CcccccccchHHHHHHhhHHHHHHHHHHHH
Q 026366 33 AIPHILSLGDNLKLEIGRQKEEFDQYVRIQ 62 (239)
Q Consensus 33 ~~~~~~~~~~~l~~~l~~q~~eid~~l~~q 62 (239)
+.+..++++|-....+..++.-||.|++.-
T Consensus 9 ~~et~l~l~d~~~~~i~n~~s~~D~f~q~~ 38 (246)
T KOG4657|consen 9 TKETMLSLGDICEKDIHNQRSKIDSFIQSP 38 (246)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788989999999999999998655
No 89
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=73.87 E-value=95 Score=30.55 Aligned_cols=61 Identities=26% Similarity=0.272 Sum_probs=39.9
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHh----HH--HH---------HhHHHHhhhhHHHHHHHHHhHHHHHHhc
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQV----SM--EV---------QSWHYKAKYNESVVNALKNNLKQAVAQG 149 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql----~~--E~---------q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~~ 149 (239)
+.+-|..|++||+++...-.+||.-.... .. |. ..+|..-+.|...-..||.+|+.+++++
T Consensus 451 mdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 451 MDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 56779999999999988888888433211 11 11 1344555566667777888888776653
No 90
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=73.74 E-value=0.77 Score=45.32 Aligned_cols=42 Identities=24% Similarity=0.528 Sum_probs=35.1
Q ss_pred cccccccccccccceEEeCCCCcccccchHhc---------CCCCCCCcccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGL---------IGVCPVCKAMR 230 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~---------l~~CPvCr~~i 230 (239)
+...|.+|.+...+.+.-.|.|. +|..|... --.||+|....
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 34589999999999999999999 99999742 16999997654
No 91
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=73.56 E-value=36 Score=27.54 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=29.6
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHH
Q 026366 42 DNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 42 ~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
+||..-++.|..++..+- ...+.+...+.+. ++|.....+ .|+.+++++.+|.-|+-++..=.
T Consensus 33 ~dL~~R~~~Q~~~~~~~~-~~l~~i~~~l~~L-~~~~~~~~~---------------rl~~~r~r~~~L~hR~l~v~~~~ 95 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHR-ERLKEINDKLEEL-QKHDLETSA---------------RLEEARRRHQELSHRLLRVLRKQ 95 (141)
T ss_dssp -------------HHHHH-HHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888876532 2223344444455 444333333 45557888888888887776544
Q ss_pred HhHHHHhhhhHHHHHHHHHhHHHHHHh
Q 026366 122 QSWHYKAKYNESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 122 q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~ 148 (239)
+.-+.....--+.-..|+.+|+.+...
T Consensus 96 eilr~~g~~l~~eEe~L~~~le~l~~~ 122 (141)
T PF13874_consen 96 EILRNRGYALSPEEEELRKRLEALEAQ 122 (141)
T ss_dssp HHHHH----------------------
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 433332222222234566666666443
No 92
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=73.22 E-value=60 Score=27.95 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 026366 50 RQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVE 112 (239)
Q Consensus 50 ~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeE 112 (239)
....++.++|..|.+.+|.-=+..|+-+ .-+..+.+++++++.+|.+....+..|+.
T Consensus 54 ~~e~~Lpqll~~h~eEvr~Lr~~LR~~q------~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 54 DTEAELPQLLQRHNEEVRVLRERLRKSQ------EQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667777777775544444422 22344667788888887777666655544
No 93
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=72.94 E-value=11 Score=34.53 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
|++.+.++|-+|++++..+..|.+-.+.
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888999999999998888774443
No 94
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.82 E-value=1.1e+02 Score=30.72 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=42.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHH
Q 026366 63 EGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNAL 138 (239)
Q Consensus 63 ~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~L 138 (239)
+++|...|...++ ....|....+. +.........|.+.+..++.++..+++++..+...+.....+++.+...|
T Consensus 173 v~~l~~eL~~~~e-e~e~L~~~~ke-l~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l 246 (546)
T PF07888_consen 173 VERLEAELEQEEE-EMEQLKQQQKE-LTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKL 246 (546)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 23333333332 22333344557778888888888888888888877776666555444433
No 95
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=72.73 E-value=2 Score=28.75 Aligned_cols=36 Identities=36% Similarity=0.840 Sum_probs=23.4
Q ss_pred ccccccc--cccceEEeCCC-----CcccccchHhc------CCCCCCCc
Q 026366 191 ICRACNI--QEVSILLLPCR-----HLCLCKDCEGL------IGVCPVCK 227 (239)
Q Consensus 191 ~C~iC~~--~~~~vlllPC~-----Hlc~C~~C~~~------l~~CPvCr 227 (239)
.|.||++ .+.+.++.||. |+ +=..|... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4889996 66678889995 22 22345432 25899984
No 96
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.28 E-value=25 Score=30.57 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=30.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 60 RIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
+.+.+.++..|.+.++... .....+..++.+.+..+..+..+|.+|.+.+..+..|+.
T Consensus 99 e~el~~l~~~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWN-----QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666554422 122223334444555666667777777666666655544
No 97
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=71.87 E-value=15 Score=34.00 Aligned_cols=42 Identities=19% Similarity=0.456 Sum_probs=28.9
Q ss_pred ccccccccccccceEEeCC----C-CcccccchHhcC----CCCCCCcccc
Q 026366 189 QMICRACNIQEVSILLLPC----R-HLCLCKDCEGLI----GVCPVCKAMR 230 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC----~-Hlc~C~~C~~~l----~~CPvCr~~i 230 (239)
...|+||.+.+..-++..- | -+..|.-|...- ..||.|....
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC
Confidence 3489999999975444332 2 134799997643 7999998763
No 98
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.81 E-value=67 Score=27.93 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
+.++++.++..++..+..+.++++
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 99
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=71.57 E-value=79 Score=28.62 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSW 124 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~W 124 (239)
+|..-+.-+.+|++.+..|.+|++.-
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555554433
No 100
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=71.51 E-value=1.9 Score=40.12 Aligned_cols=45 Identities=22% Similarity=0.538 Sum_probs=29.2
Q ss_pred cccccccccc-------------------cccceEEeCCCCcccccchH-h-c----------CCCCCCCcccccc
Q 026366 188 MQMICRACNI-------------------QEVSILLLPCRHLCLCKDCE-G-L----------IGVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~-------------------~~~~vlllPC~Hlc~C~~C~-~-~----------l~~CPvCr~~i~~ 232 (239)
..+.|++|+. .+.+..|-||||+|.=+.=. + . -..||.|.....+
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4578999987 33445678999996422211 0 1 1589999887654
No 101
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.78 E-value=87 Score=28.81 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=17.4
Q ss_pred cchHHHHHHhhHHHHHHHHHHHHHHhHHHHH
Q 026366 40 LGDNLKLEIGRQKEEFDQYVRIQEGNLIKGV 70 (239)
Q Consensus 40 ~~~~l~~~l~~q~~eid~~l~~q~e~lr~~l 70 (239)
.+++....|..|=.=|=.+=+++....|+.|
T Consensus 112 a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeW 142 (325)
T PF08317_consen 112 ADPDMRLLMDNQFQLVKTYARLEAKKMWYEW 142 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666655555555555555555444
No 102
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=70.28 E-value=1.8 Score=29.26 Aligned_cols=41 Identities=27% Similarity=0.832 Sum_probs=24.1
Q ss_pred ccccccccccceEEeCCC-CcccccchHhcC----CCCCCCcccccceE
Q 026366 191 ICRACNIQEVSILLLPCR-HLCLCKDCEGLI----GVCPVCKAMRTASV 234 (239)
Q Consensus 191 ~C~iC~~~~~~vlllPC~-Hlc~C~~C~~~l----~~CPvCr~~i~~~v 234 (239)
.|+.|+-...+.+ -|. |+ +|-.|-..| ..||+|..+....+
T Consensus 4 nCKsCWf~~k~Li--~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHY-LCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-E-EEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchh-HHHHHHHHHhccccCCCcccCcCcccc
Confidence 6999998888765 477 66 999999876 89999998876543
No 103
>PRK11637 AmiB activator; Provisional
Probab=69.86 E-value=96 Score=29.50 Aligned_cols=17 Identities=0% Similarity=0.132 Sum_probs=9.7
Q ss_pred chHHHHHHhhHHHHHHH
Q 026366 41 GDNLKLEIGRQKEEFDQ 57 (239)
Q Consensus 41 ~~~l~~~l~~q~~eid~ 57 (239)
.+++..++++.+.+|+.
T Consensus 42 ~~~~~~~l~~l~~qi~~ 58 (428)
T PRK11637 42 ASDNRDQLKSIQQDIAA 58 (428)
T ss_pred chhhHHHHHHHHHHHHH
Confidence 35566666666655554
No 104
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.48 E-value=89 Score=32.84 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026366 98 MEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql 117 (239)
.|++.++-+..+|..+|..+
T Consensus 444 ~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhh
Confidence 35555555555555555443
No 105
>PRK09039 hypothetical protein; Validated
Probab=68.90 E-value=1e+02 Score=28.79 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=40.1
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHh
Q 026366 94 HGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 94 reke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~ 148 (239)
.++..++..++.++..|+.++..+..+-.+-...-.+.+..+..|...|+.++++
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444467778888888888888888877776666667777777777777777644
No 106
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=68.87 E-value=80 Score=27.61 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHhhhhh---------------cchHHHHHHHHHHHHHHHHHHH
Q 026366 55 FDQYVRIQEGNLI---KGVREMKQRHTYSFLSAIEKEVGRRLH---------------GKEMEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 55 id~~l~~q~e~lr---~~l~e~r~r~~r~Ll~~~e~~~~~rlr---------------eke~Eie~~~~~n~eLeErl~q 116 (239)
=.++|.+++|=.+ ++|+|.--||...-.+ ....+.|.+ .-++++-.+++|+.++|-||+.
T Consensus 70 EErILaLEad~~kWEqkYLEEs~mrq~a~dAa--a~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~ 147 (205)
T PF12240_consen 70 EERILALEADMTKWEQKYLEESAMRQFAMDAA--ATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKA 147 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHH
Confidence 3467788877665 5688888888754332 222222222 1157899999999999999999
Q ss_pred hHHHHHhHHHHhhhhHHHHHHHHHh
Q 026366 117 VSMEVQSWHYKAKYNESVVNALKNN 141 (239)
Q Consensus 117 l~~E~q~Wq~~A~~~Ea~~~~Lr~~ 141 (239)
|.+... +.++|+..|+.+
T Consensus 148 LhaqI~-------EKDAmIkVLQqr 165 (205)
T PF12240_consen 148 LHAQIA-------EKDAMIKVLQQR 165 (205)
T ss_pred HHHHHH-------HHHHHHHHHHhh
Confidence 986554 556888876554
No 107
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.69 E-value=43 Score=34.54 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH-----------HhHHHHhhhhHHHHHHHHHhHHHHHHh
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEV-----------QSWHYKAKYNESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~-----------q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~ 148 (239)
.++++..+...|..|++.+..-. ..|...-..-...+..|++.|+++...
T Consensus 601 R~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 601 RYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888887664422 345544333334456677777776443
No 108
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.16 E-value=21 Score=29.44 Aligned_cols=36 Identities=31% Similarity=0.877 Sum_probs=22.4
Q ss_pred ccccccccccceEEeCCCCcc------cccchHhcC--------CCCCCCccc
Q 026366 191 ICRACNIQEVSILLLPCRHLC------LCKDCEGLI--------GVCPVCKAM 229 (239)
Q Consensus 191 ~C~iC~~~~~~vlllPC~Hlc------~C~~C~~~l--------~~CPvCr~~ 229 (239)
.|-||....- ---|||.| +|..|..++ ..|-.|+..
T Consensus 67 tC~IC~KTKF---ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 67 TCGICHKTKF---ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred chhhhhhccc---ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 6888865321 22588886 366665543 577777754
No 109
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.88 E-value=30 Score=25.75 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYK 127 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~ 127 (239)
|++.++....+|+..-.++..|-..|+.+
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666777778888888889863
No 110
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=67.76 E-value=33 Score=29.17 Aligned_cols=75 Identities=21% Similarity=0.157 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHh
Q 026366 56 DQYVRIQEGNLIKGV-------REMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKA 128 (239)
Q Consensus 56 d~~l~~q~e~lr~~l-------~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A 128 (239)
.+|+.+-.++||..+ ..+-+++.....+-+...+..-.++.+.||.++.++...|++-..... .++++|
T Consensus 78 ~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k----~LrnKa 153 (171)
T PF04799_consen 78 RQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSK----TLRNKA 153 (171)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 446666677776654 456777778888888888888888888888888888877776555554 666655
Q ss_pred hhhHHH
Q 026366 129 KYNESV 134 (239)
Q Consensus 129 ~~~Ea~ 134 (239)
..-+..
T Consensus 154 ~~L~~e 159 (171)
T PF04799_consen 154 NWLESE 159 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 111
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=67.40 E-value=61 Score=30.00 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=25.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026366 44 LKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKE 88 (239)
Q Consensus 44 l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~ 88 (239)
..++|.+.+.++.-+|+.+..+|- +..+++-+.||..|+..
T Consensus 25 av~qL~~~r~~teelIr~rVrq~V----~hVqaqEreLLe~v~~r 65 (324)
T PF12126_consen 25 AVSQLGRARADTEELIRARVRQVV----AHVQAQERELLEAVEAR 65 (324)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 445666777777767766655555 33345556666666654
No 112
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=66.78 E-value=79 Score=26.74 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=21.7
Q ss_pred ccccccccccccceEEeCCCCcccccchHhcCCCCCCCcccccceEE
Q 026366 189 QMICRACNIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAMRTASVE 235 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~i~~~v~ 235 (239)
...|++| ||. |.. ..-..||+|..+...+..
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~P~~CPiCga~k~~F~~ 164 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EAPEVCPICGAPKEKFEK 164 (166)
T ss_pred EEEcCCC------------CCc--ccC--CCCCcCCCCCChHHHhhc
Confidence 4577776 665 444 456899999998776543
No 113
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=66.49 E-value=69 Score=32.03 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=42.3
Q ss_pred HHHhHHHHHHHHHHHHHHH--HHHHHHHH---HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 62 QEGNLIKGVREMKQRHTYS--FLSAIEKE---VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 62 q~e~lr~~l~e~r~r~~r~--Ll~~~e~~---~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
...+|+-.+.+.|+++... .+...... ...+|.++++|+.-+++++..|++.++.+..|+.
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555566665555433 33333333 3467888899999999999999999999999885
No 114
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.26 E-value=43 Score=33.92 Aligned_cols=9 Identities=44% Similarity=0.763 Sum_probs=4.0
Q ss_pred ccccccccc
Q 026366 10 LRLSYEDDE 18 (239)
Q Consensus 10 l~l~~~~~~ 18 (239)
+.++++|++
T Consensus 334 ~~~~~~ddH 342 (652)
T COG2433 334 LKISVSDDH 342 (652)
T ss_pred cCCCCCCch
Confidence 344444443
No 115
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=66.14 E-value=48 Score=24.06 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 61 IQEGNLIKGVREMKQRHTYSFLSAIEK-EVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 61 ~q~e~lr~~l~e~r~r~~r~Ll~~~e~-~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
...+++...+.+-++.|.+.|...... .....+ +.-...++.....+..+|+.+.....
T Consensus 14 ~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el---~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 14 EDIDKIKEKLNELRKLHKKILSSPDQDSELKREL---DELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444556666667777777666655522 122222 22333345566677777777777643
No 116
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.64 E-value=1.8e+02 Score=31.79 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=53.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch---HHHHHHHHHHHHHHHHHHHhHH
Q 026366 44 LKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKE---MEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 44 l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke---~Eie~~~~~n~eLeErl~ql~~ 119 (239)
+.+++..+.++++.-+..+.+.+...+++.++ ....-+..+++.....|..+. ..|..++.+...|++.|++...
T Consensus 715 ~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~-~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 715 LRNELKAQWQELEAELDEQIEQIKQEIAAAKQ-EAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777788888888877644 445556788888777777665 3777788888888888777665
No 117
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.74 E-value=58 Score=33.91 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=18.0
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
-||++|+||+|++..+..|+.-+.++-.
T Consensus 530 tlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 530 TLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3666666777766666666666665544
No 118
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=64.49 E-value=4.3 Score=30.62 Aligned_cols=40 Identities=23% Similarity=0.567 Sum_probs=26.2
Q ss_pred cccccccccc--ceEEeCCCCcccccchHhc-------CCCCCCCccccc
Q 026366 191 ICRACNIQEV--SILLLPCRHLCLCKDCEGL-------IGVCPVCKAMRT 231 (239)
Q Consensus 191 ~C~iC~~~~~--~vlllPC~Hlc~C~~C~~~-------l~~CPvCr~~i~ 231 (239)
.|+.|.-..- .+++..|+|. |=.-|... -..||+||++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4555544322 2567789998 77777432 279999998753
No 119
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.87 E-value=64 Score=31.66 Aligned_cols=45 Identities=11% Similarity=0.320 Sum_probs=26.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026366 44 LKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLH 94 (239)
Q Consensus 44 l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlr 94 (239)
|..++.+-+.+++.++ .++++|++.-+..|+|.. .+...+..+|.
T Consensus 64 lva~~k~~r~~~~~l~-~~N~~l~~eN~~L~~r~~-----~id~~i~~av~ 108 (472)
T TIGR03752 64 LVAEVKELRKRLAKLI-SENEALKAENERLQKREQ-----SIDQQIQQAVQ 108 (472)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh-----hHHHHHHHHHH
Confidence 4556666666666554 466777777776666553 44444444443
No 120
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=63.85 E-value=1.9e+02 Score=32.01 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 95 GKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 95 eke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
..|.-+.++..+..+|+-++..|..+..
T Consensus 1609 ~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1609 AAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666666655554443
No 121
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=62.35 E-value=26 Score=27.69 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHhh
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYKAK 129 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~ 129 (239)
|+|-++.++.+|+||..++..|+.-.+..+.
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8888999999999999999999987765443
No 122
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=62.25 E-value=82 Score=25.39 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=5.6
Q ss_pred HHHHHHHHhHHHH
Q 026366 133 SVVNALKNNLKQA 145 (239)
Q Consensus 133 a~~~~Lr~~Lqq~ 145 (239)
..+..|+..+++.
T Consensus 115 ee~~klk~~~~~~ 127 (151)
T PF11559_consen 115 EELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 123
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=62.12 E-value=40 Score=28.63 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=12.7
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
+.++...|..+...+..|+++++.+..+..
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELK 140 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 124
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=61.40 E-value=53 Score=22.93 Aligned_cols=47 Identities=21% Similarity=0.184 Sum_probs=33.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHH
Q 026366 61 IQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 61 ~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~q 116 (239)
-...+++.+|...-+|....|+....- ..|.+.+.++|.+|...++|
T Consensus 12 ~~~~~~W~~L~~~l~rY~~vL~~R~~l---------~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 12 DEKIRLWDALENFLKRYNKVLLDRAAL---------IQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHh
Confidence 344566677777777777666644332 45889999999999988876
No 125
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=61.29 E-value=3.2 Score=25.71 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=12.4
Q ss_pred CCCCCCCcccccceEE
Q 026366 220 IGVCPVCKAMRTASVE 235 (239)
Q Consensus 220 l~~CPvCr~~i~~~v~ 235 (239)
...||+|..+...+.+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 3799999998776654
No 126
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=61.10 E-value=1.8 Score=39.92 Aligned_cols=42 Identities=26% Similarity=0.551 Sum_probs=27.7
Q ss_pred cccccccccccc---eEEeCCCCcccccchHhc----------------------C-----CCCCCCcccccc
Q 026366 190 MICRACNIQEVS---ILLLPCRHLCLCKDCEGL----------------------I-----GVCPVCKAMRTA 232 (239)
Q Consensus 190 ~~C~iC~~~~~~---vlllPC~Hlc~C~~C~~~----------------------l-----~~CPvCr~~i~~ 232 (239)
+.|+||.-..++ ++..||.|+ +=..|..+ + ..|||||..|..
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 467777654443 778899999 33345321 0 479999988753
No 127
>PLN02189 cellulose synthase
Probab=60.90 E-value=5.7 Score=42.24 Aligned_cols=43 Identities=23% Similarity=0.622 Sum_probs=33.2
Q ss_pred cccccccccc----ccceEEeCCC--CcccccchHhc-----CCCCCCCccccc
Q 026366 189 QMICRACNIQ----EVSILLLPCR--HLCLCKDCEGL-----IGVCPVCKAMRT 231 (239)
Q Consensus 189 ~~~C~iC~~~----~~~vlllPC~--Hlc~C~~C~~~-----l~~CPvCr~~i~ 231 (239)
...|.||.+. ...-+|+.|. .+.+|..|..- -+.||.|++...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3489999997 5556888886 34589999864 289999998765
No 128
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=60.83 E-value=1.3e+02 Score=27.05 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 026366 58 YVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQS 123 (239)
Q Consensus 58 ~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~ 123 (239)
+|..++.+|...|...+.+..... +.+......-+++.-..|+.+...+..|+-.+..+..+...
T Consensus 22 ~LE~~N~~Le~~i~~~~~~~~~~~-~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~ 86 (312)
T PF00038_consen 22 FLEQENKRLESEIEELREKKGEEV-SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELED 86 (312)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHhcccccC-cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHH
Confidence 556667777776666665532111 22222222333333334444444444444444444444433
No 129
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=59.67 E-value=3.8 Score=38.54 Aligned_cols=41 Identities=27% Similarity=0.694 Sum_probs=29.8
Q ss_pred cccccccc----ccceEEeCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 191 ICRACNIQ----EVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 191 ~C~iC~~~----~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
.|+.|.+. ..+..=.|||-. +|..|...+ ..||.||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 58888873 344454566666 799998765 799999987654
No 130
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=59.48 E-value=2.1e+02 Score=31.72 Aligned_cols=11 Identities=9% Similarity=0.398 Sum_probs=4.6
Q ss_pred HHhHHHHHHHH
Q 026366 63 EGNLIKGVREM 73 (239)
Q Consensus 63 ~e~lr~~l~e~ 73 (239)
.|.++..|+++
T Consensus 1565 ae~V~eaL~~A 1575 (1758)
T KOG0994|consen 1565 AEDVVEALEEA 1575 (1758)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 131
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=58.79 E-value=1.9e+02 Score=28.53 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHhhhhH
Q 026366 104 NCKNKELVEKIKQVSMEVQSWHYKAKYNE 132 (239)
Q Consensus 104 ~~~n~eLeErl~ql~~E~q~Wq~~A~~~E 132 (239)
..+..+|..+|+.+..-...|......+.
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~~~~~~~~ 405 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARSEAEDENR 405 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777766666665554443
No 132
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=58.79 E-value=32 Score=26.96 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=25.2
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHH
Q 026366 88 EVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 88 ~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
....+++....+++++...+.++.+.++.+..|+
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445666667788888888888888888887664
No 133
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=58.34 E-value=1.2e+02 Score=26.19 Aligned_cols=81 Identities=10% Similarity=0.210 Sum_probs=45.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhH
Q 026366 63 EGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNL 142 (239)
Q Consensus 63 ~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~L 142 (239)
...+|+.--|+.+.+...+|+.-|. |+.....+++.+..+-.+.-.+.++...|.++-...-....+-.+.|..++
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~----ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEA----RANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666654443 333334466666666666666666666666655544444444455555555
Q ss_pred HHHHH
Q 026366 143 KQAVA 147 (239)
Q Consensus 143 qq~~~ 147 (239)
.++..
T Consensus 178 ~~Lq~ 182 (192)
T PF11180_consen 178 RQLQR 182 (192)
T ss_pred HHHHH
Confidence 55543
No 134
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=58.22 E-value=1.4e+02 Score=31.52 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
+.+...++.+|=+++.+|-+.|.+
T Consensus 957 k~e~e~kRK~eEeqr~~qee~e~~ 980 (1259)
T KOG0163|consen 957 KAEMETKRKAEEEQRKAQEEEERR 980 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344445555555555555555444
No 135
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=57.06 E-value=2.1e+02 Score=28.32 Aligned_cols=34 Identities=6% Similarity=0.066 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026366 55 FDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKE 88 (239)
Q Consensus 55 id~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~ 88 (239)
+-++|+.++.+.|..-..-+--..|.|+..|++.
T Consensus 183 ~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKr 216 (508)
T KOG0717|consen 183 TRRLMERENKKQRQYARQEYNETVRNLVGFVKKR 216 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444443333333446677666653
No 136
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=56.84 E-value=2.1e+02 Score=28.34 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.4
Q ss_pred eEEeCC
Q 026366 202 ILLLPC 207 (239)
Q Consensus 202 vlllPC 207 (239)
+|++.|
T Consensus 246 ~v~ls~ 251 (514)
T TIGR03319 246 AVILSG 251 (514)
T ss_pred eEEecC
Confidence 344444
No 137
>PRK02119 hypothetical protein; Provisional
Probab=56.47 E-value=74 Score=23.03 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHh
Q 026366 103 MNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 103 ~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~ 148 (239)
+..|..+||.++.....-...--..--.....+..|+..|..+..+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444554444444333322222222333455666666655433
No 138
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=56.40 E-value=2.6e+02 Score=29.31 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=56.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHH
Q 026366 60 RIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALK 139 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr 139 (239)
+-|.+.++-.|..+ ..|+-.|.+-+| .+..+|.+|+..+++....+..+++-...+..|...-.+...-.+..++.|+
T Consensus 321 r~hi~~lkesl~~k-e~~~~~Lqsdve-~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRAK-EQEAEMLQSDVE-ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444433 445555555555 3566778888888888888888888888888887777777777777777777
Q ss_pred HhHHHH
Q 026366 140 NNLKQA 145 (239)
Q Consensus 140 ~~Lqq~ 145 (239)
.+++-+
T Consensus 399 ~kie~L 404 (775)
T PF10174_consen 399 KKIENL 404 (775)
T ss_pred HHHHHH
Confidence 775443
No 139
>PRK04406 hypothetical protein; Provisional
Probab=55.97 E-value=77 Score=23.10 Aligned_cols=47 Identities=6% Similarity=0.161 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHh
Q 026366 102 VMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 102 ~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~ 148 (239)
.+..|..+||.++.....-...--..--...-.+..|+..|+.+..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444333333333334556666666666443
No 140
>smart00338 BRLZ basic region leucin zipper.
Probab=55.36 E-value=67 Score=22.17 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSMEVQSW 124 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E~q~W 124 (239)
+.+++.+...|.+|...+..+..|+...
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666655544
No 141
>PRK12704 phosphodiesterase; Provisional
Probab=55.21 E-value=2.2e+02 Score=28.18 Aligned_cols=6 Identities=17% Similarity=0.468 Sum_probs=2.3
Q ss_pred ceEEeC
Q 026366 201 SILLLP 206 (239)
Q Consensus 201 ~vlllP 206 (239)
.++++.
T Consensus 251 ~~v~ls 256 (520)
T PRK12704 251 EAVILS 256 (520)
T ss_pred CeEEEe
Confidence 333333
No 142
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=55.20 E-value=1.2e+02 Score=29.12 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=45.0
Q ss_pred cchHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 40 LGDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 40 ~~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
+|.++...-++|..+...-+.....+++....+.-+.... |.. .-.....++...+.++..+..+...|++++..+..
T Consensus 50 ~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~-l~~-~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~ 127 (390)
T PRK10920 50 AGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQE-LEG-ILKQQAKALDQANRQQAALAKQLDELQQKVATISG 127 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555655555555444443333333344333333222221 222 22344555666677788888888888888887764
Q ss_pred HH-HhHH
Q 026366 120 EV-QSWH 125 (239)
Q Consensus 120 E~-q~Wq 125 (239)
.. ..|.
T Consensus 128 ~~~~dWl 134 (390)
T PRK10920 128 SDAKTWL 134 (390)
T ss_pred CChhhHH
Confidence 44 4564
No 143
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=54.83 E-value=1e+02 Score=24.07 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=37.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 59 VRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 59 l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
|+.|+.-|++++-+-..+.. .|-..+.. -...||-.+.|++.+.-+|..|..||..+-.|-.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~-~L~e~Lk~-ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNA-ELKEQLKE-KEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777665533322 22222211 1234666667888888888888888887765544
No 144
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=54.77 E-value=4 Score=34.13 Aligned_cols=25 Identities=28% Similarity=0.705 Sum_probs=20.7
Q ss_pred cccchHhc-CCCCCCCcccccceEEE
Q 026366 212 LCKDCEGL-IGVCPVCKAMRTASVEV 236 (239)
Q Consensus 212 ~C~~C~~~-l~~CPvCr~~i~~~v~v 236 (239)
+|..|... +..||.|..+|.+..++
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 78888765 59999999999987654
No 145
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=54.07 E-value=2.1e+02 Score=27.45 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=18.7
Q ss_pred HHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHH
Q 026366 84 AIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSME 120 (239)
Q Consensus 84 ~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E 120 (239)
.+.+.+....+.++.+.+.+..+..+|.++++.+..+
T Consensus 55 ~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 91 (418)
T TIGR00414 55 ELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAA 91 (418)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333222556666666666666666543
No 146
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.98 E-value=3e+02 Score=29.22 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
||++.-..-.||| +.+++..|-
T Consensus 394 eie~rEaar~ElE-kqRqlewEr 415 (1118)
T KOG1029|consen 394 EIERREAAREELE-KQRQLEWER 415 (1118)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH
Confidence 3443333333443 445555443
No 147
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=53.91 E-value=1.2e+02 Score=24.69 Aligned_cols=85 Identities=21% Similarity=0.240 Sum_probs=53.6
Q ss_pred HHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHH
Q 026366 60 RIQEGNLIKGVREMKQRHT--YSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNA 137 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~~--r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~ 137 (239)
..+.+++...|.+....-- -.....+| .+.+|+...+++++.+..+..+..++++++...+...-+....-|.....
T Consensus 48 E~eld~~~~~l~~~k~~lee~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~ 126 (143)
T PF12718_consen 48 EEELDKLEEQLKEAKEKLEESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQ 126 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHH
Confidence 4556666666666544332 22334445 67788888888999988888888888888887766555554444444444
Q ss_pred HHHhHHHH
Q 026366 138 LKNNLKQA 145 (239)
Q Consensus 138 Lr~~Lqq~ 145 (239)
+-..++++
T Consensus 127 ~E~k~eel 134 (143)
T PF12718_consen 127 WEEKYEEL 134 (143)
T ss_pred HHHHHHHH
Confidence 44444443
No 148
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=53.58 E-value=1.7e+02 Score=26.39 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 026366 100 IEVMNCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
.+.+--...+|+|+-+.|..|++..+.
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666666666666665554
No 149
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=53.26 E-value=2.2 Score=39.65 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=35.1
Q ss_pred ccccccccccccc-eEEeCCCCcccccchHhc----CCCCCCCcccccceE
Q 026366 189 QMICRACNIQEVS-ILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTASV 234 (239)
Q Consensus 189 ~~~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~~v 234 (239)
-..|.+|.+=-.+ +.+.=|-|- ||+.|--. ...||.|...|.++.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 4589999886666 334469999 99999754 389999999988875
No 150
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.49 E-value=1.8e+02 Score=26.17 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
|++.+.....++.||++++..|+.-....-+.-...+..|+.+++.+
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 44555555666778888888888766666666666788888887776
No 151
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.80 E-value=1.9e+02 Score=27.45 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH-------hHHHHhhhhHHHHHHHHHhHHHH
Q 026366 75 QRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ-------SWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 75 ~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q-------~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
|..+..|-..-++-...-++..+ =+.+++.+...||+-++++..|++ +.+..+.+.|..+..|...|.++
T Consensus 98 q~e~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 44445554444444433333333 445555555666666666666654 34445555555556665555444
No 152
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=51.53 E-value=2.8e+02 Score=28.22 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhHH
Q 026366 55 FDQYVRIQEGNLI 67 (239)
Q Consensus 55 id~~l~~q~e~lr 67 (239)
++++++-+.++|.
T Consensus 113 Ls~L~~EqEerL~ 125 (617)
T PF15070_consen 113 LSRLNQEQEERLA 125 (617)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555554
No 153
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=51.24 E-value=51 Score=25.03 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhhc---chHHHHHHHHHHHHHHHHHHHhHHH
Q 026366 83 SAIEKEVGRRLHG---KEMEIEVMNCKNKELVEKIKQVSME 120 (239)
Q Consensus 83 ~~~e~~~~~rlre---ke~Eie~~~~~n~eLeErl~ql~~E 120 (239)
..+|+++.+|+-. -++|||++....+.|++++.++...
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677666544 3479999999999999999988853
No 154
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=50.99 E-value=2.9e+02 Score=29.42 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNL 142 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~L 142 (239)
++++.++....+++++++.-+..-.-.....-+.+|+.-|.|...+
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ 423 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEAL 423 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Confidence 3456666666666666666555433333344455666555554443
No 155
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.92 E-value=5.7 Score=32.31 Aligned_cols=25 Identities=32% Similarity=0.759 Sum_probs=18.9
Q ss_pred cccchHh-cCCCCCCCcccccceEEE
Q 026366 212 LCKDCEG-LIGVCPVCKAMRTASVEV 236 (239)
Q Consensus 212 ~C~~C~~-~l~~CPvCr~~i~~~v~v 236 (239)
||..|.. .+..||+|.++|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 5666654 468999999999987654
No 156
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=50.33 E-value=54 Score=28.34 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 026366 99 EIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~ 118 (239)
.++.++.+|.+|++++..+-
T Consensus 48 Q~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 48 QLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554
No 157
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=49.82 E-value=1.4e+02 Score=24.29 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=38.0
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHH---HHHHHHHhHHHH
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNES---VVNALKNNLKQA 145 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea---~~~~Lr~~Lqq~ 145 (239)
+..+..+++.||..+.++|..|+..|.++......-...+...+. .+..|...++.+
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L 85 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence 445677888899999999999998888888776655554444332 233455554444
No 158
>PRK11637 AmiB activator; Provisional
Probab=49.67 E-value=2e+02 Score=27.37 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 026366 99 EIEVMNCKNKELVE 112 (239)
Q Consensus 99 Eie~~~~~n~eLeE 112 (239)
+|..+..+...+++
T Consensus 97 ~i~~~~~ei~~l~~ 110 (428)
T PRK11637 97 TLNQLNKQIDELNA 110 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 159
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=49.38 E-value=3.1 Score=37.92 Aligned_cols=42 Identities=21% Similarity=0.447 Sum_probs=28.8
Q ss_pred ccccccc----cccceEEeCCCCcccccchHhcC----CCCCCCcccccceE
Q 026366 191 ICRACNI----QEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTASV 234 (239)
Q Consensus 191 ~C~iC~~----~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v 234 (239)
-|++|.+ ....+..+||+|.-- ..|...+ -.||+|.. +....
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHH
Confidence 4888876 445577889999953 4554432 79999988 55443
No 160
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.16 E-value=39 Score=26.17 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=22.6
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
+.++...+++.+..+|.+|+.+-..|..|...|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45555556666666666777666667766666654
No 161
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=48.62 E-value=6.2 Score=24.07 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=12.5
Q ss_pred CCCCCCCcccccceEE
Q 026366 220 IGVCPVCKAMRTASVE 235 (239)
Q Consensus 220 l~~CPvCr~~i~~~v~ 235 (239)
-..||+|..+...++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 3699999998776654
No 162
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=48.43 E-value=2.2e+02 Score=27.33 Aligned_cols=83 Identities=20% Similarity=0.162 Sum_probs=53.6
Q ss_pred ccchHHHHHHhhHHHHHHH---HHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 026366 39 SLGDNLKLEIGRQKEEFDQ---YVRIQEGNLIKGVREMK-QRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKI 114 (239)
Q Consensus 39 ~~~~~l~~~l~~q~~eid~---~l~~q~e~lr~~l~e~r-~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl 114 (239)
.+|-.+.+-.|+|...+.+ +++.|...+....+.++ -++...+++..+.. ++..+.+++...++..++...+
T Consensus 45 gLGagg~~f~QqQ~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~e----l~~l~~~~~~~~~ql~e~Q~~v 120 (391)
T COG2959 45 GLGAGGYYFGQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAE----LDRLERQLETLQKQLSELQKKV 120 (391)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHH
Confidence 3566677777888877655 66667665555554443 14445555555544 3346678888888899999888
Q ss_pred HHhHHH-HHhHH
Q 026366 115 KQVSME-VQSWH 125 (239)
Q Consensus 115 ~ql~~E-~q~Wq 125 (239)
+.+..- ...|.
T Consensus 121 ~~is~~~~~dWl 132 (391)
T COG2959 121 ATISGSDRKDWL 132 (391)
T ss_pred HHhccCChhhHH
Confidence 888843 34564
No 163
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.01 E-value=4.6e+02 Score=29.68 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=14.6
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 026366 94 HGKEMEIEVMNCKNKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 94 reke~Eie~~~~~n~eLeErl~ql~~E~q~Wq 125 (239)
.+.+.+++.+..+..++++.+..+..+...|+
T Consensus 365 ee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443
No 164
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=47.57 E-value=62 Score=28.78 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHH
Q 026366 95 GKEMEIEVMNCKNKELVEKIKQVSME 120 (239)
Q Consensus 95 eke~Eie~~~~~n~eLeErl~ql~~E 120 (239)
+....|+++.+++..|+.|+.++...
T Consensus 116 ~~~~~~e~l~~e~~~l~~rl~ql~~~ 141 (232)
T KOG2483|consen 116 TQQQDIEDLSRENRKLKARLEQLSLP 141 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33458999999999999999998743
No 165
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.44 E-value=2.7e+02 Score=26.81 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 85 IEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 85 ~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
+|.++-.-+.---.||.+++...+..||++....-|- |+.-+..+...++++-.+
T Consensus 263 LEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eR------aRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 263 LEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYER------ARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHH
Confidence 4444433333334588888888888888888776543 344444455555554433
No 166
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=46.59 E-value=73 Score=20.08 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.3
Q ss_pred HHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHH
Q 026366 112 EKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQ 144 (239)
Q Consensus 112 Erl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq 144 (239)
.+++.+..-|+-|+..-...|+-|.+|.++|.+
T Consensus 2 ~ql~~v~e~N~qWq~YD~qRE~YV~~L~~rl~e 34 (35)
T PF12180_consen 2 QQLRDVLEKNQQWQKYDQQREAYVRGLLARLKE 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 356666677889999999999999999988765
No 167
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.46 E-value=1.7e+02 Score=27.62 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=6.5
Q ss_pred HHHHHhHHHHHHHH
Q 026366 60 RIQEGNLIKGVREM 73 (239)
Q Consensus 60 ~~q~e~lr~~l~e~ 73 (239)
..-.|+||...+|.
T Consensus 213 sa~~eklR~r~eee 226 (365)
T KOG2391|consen 213 SAVREKLRRRREEE 226 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555444444
No 168
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=46.36 E-value=6.7 Score=43.53 Aligned_cols=46 Identities=26% Similarity=0.583 Sum_probs=32.7
Q ss_pred cccccccccccccc---eEEeCCCCcccccchHhc--------------CCCCCCCcccccceE
Q 026366 188 MQMICRACNIQEVS---ILLLPCRHLCLCKDCEGL--------------IGVCPVCKAMRTASV 234 (239)
Q Consensus 188 ~~~~C~iC~~~~~~---vlllPC~Hlc~C~~C~~~--------------l~~CPvCr~~i~~~v 234 (239)
..-+|+||+...-+ .+-+-|+|+ +=..|... +..||+|..+|+-++
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 34589999986543 677899998 44455332 269999999987543
No 169
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=46.13 E-value=3.1e+02 Score=30.29 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=27.1
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
+..++.+.++++..+.+++..|++.++-+...++.- .-...-++.|+.+|+..
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~----~~~~~kv~~~rk~le~~ 551 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA----ADSLEKVNSLRKQLEEA 551 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHh
Confidence 334555555556666666666665555553333322 22234455666666544
No 170
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.98 E-value=3e+02 Score=28.72 Aligned_cols=12 Identities=33% Similarity=0.803 Sum_probs=7.1
Q ss_pred HhhHHHHHHHHH
Q 026366 48 IGRQKEEFDQYV 59 (239)
Q Consensus 48 l~~q~~eid~~l 59 (239)
+.....+++.+|
T Consensus 511 ~~~~~~~~~~li 522 (782)
T PRK00409 511 IGEDKEKLNELI 522 (782)
T ss_pred HhhhhhHHHHHH
Confidence 344555677776
No 171
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=45.97 E-value=1.3e+02 Score=22.61 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=40.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHH----HHhhhhHHHH
Q 026366 62 QEGNLIKGVREMKQRHTYSFLSAIE--KEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWH----YKAKYNESVV 135 (239)
Q Consensus 62 q~e~lr~~l~e~r~r~~r~Ll~~~e--~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq----~~A~~~Ea~~ 135 (239)
...+++..+.+.++-|...+- ... ..+..+|.. .++.++....++..+|+.+......-. ...+...+..
T Consensus 16 ~I~~i~~~v~~l~~l~~~~l~-~~~~~~~~~~~l~~---~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~ 91 (117)
T smart00503 16 NIQKISQNVAELQKLHEELLT-PPDADKELREKLER---LIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQT 91 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHH
Confidence 334444444444444443332 222 223333333 555566667777888888776554210 1223334455
Q ss_pred HHHHHhHHHHHH
Q 026366 136 NALKNNLKQAVA 147 (239)
Q Consensus 136 ~~Lr~~Lqq~~~ 147 (239)
+.|...++.++.
T Consensus 92 ~~L~~~f~~~m~ 103 (117)
T smart00503 92 EKLRKKFKEVMN 103 (117)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 172
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=45.91 E-value=6.4 Score=32.13 Aligned_cols=32 Identities=16% Similarity=0.401 Sum_probs=24.7
Q ss_pred ccccccccccccc---eEEeCCCCc-----ccccchHhcC
Q 026366 189 QMICRACNIQEVS---ILLLPCRHL-----CLCKDCEGLI 220 (239)
Q Consensus 189 ~~~C~iC~~~~~~---vlllPC~Hl-----c~C~~C~~~l 220 (239)
...|.||+++--+ ||.+||+-. .+|..|..+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 3589999986544 888999944 2799998765
No 173
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=45.59 E-value=4.4e+02 Score=28.73 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=46.1
Q ss_pred HHHHHHHHHHH----hhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHH-------HHHHHHHhHHHH
Q 026366 79 YSFLSAIEKEV----GRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNES-------VVNALKNNLKQA 145 (239)
Q Consensus 79 r~Ll~~~e~~~----~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea-------~~~~Lr~~Lqq~ 145 (239)
+-.|+.+++.. ...+-+.+.+++.+.+++..|++.+.+|..|-+.-+..++.-+. .+..|+..+++.
T Consensus 378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555553 34456666788889999999999999999998888777765553 444555555444
No 174
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=45.34 E-value=1.2e+02 Score=22.35 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHH
Q 026366 88 EVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 88 ~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
....+|.+|++||++++..+..|..++......+
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~Ln 42 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELN 42 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788889999999988888887777665433
No 175
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=44.73 E-value=1.1e+02 Score=21.38 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLK 143 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lq 143 (239)
.|+++.....+|..++.+|..+..+-+.-+......++.-..+|+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666555444443344443344443
No 176
>PRK10698 phage shock protein PspA; Provisional
Probab=44.60 E-value=2.1e+02 Score=24.91 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=32.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhcch--HHHHHHHHHHHHHHHHHHHhHHHHHh
Q 026366 60 RIQEGNLIKGVREMKQRHTYSFLSAIEKE-VGRRLHGKE--MEIEVMNCKNKELVEKIKQVSMEVQS 123 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~-~~~rlreke--~Eie~~~~~n~eLeErl~ql~~E~q~ 123 (239)
+.+..+|+..|++.|.++. .|++-...+ +..++++.- .....+..+--.+|++|.++.++.++
T Consensus 119 ~~~l~~L~~ki~eak~k~~-~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 119 KKEIGELENKLSETRARQQ-ALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhH
Confidence 5567778888888876664 233322222 222222211 11223334445567777777766665
No 177
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.53 E-value=16 Score=33.15 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=31.2
Q ss_pred ccccccccc----ccccceEEeCCCCcccccchHhc--CCCCCCCcccccceEEE
Q 026366 188 MQMICRACN----IQEVSILLLPCRHLCLCKDCEGL--IGVCPVCKAMRTASVEV 236 (239)
Q Consensus 188 ~~~~C~iC~----~~~~~vlllPC~Hlc~C~~C~~~--l~~CPvCr~~i~~~v~v 236 (239)
....|+|=. +....+++.+|||.- =..=-.. ...|++|.+++...-.|
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~-SerAlKeikas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVF-SERALKEIKASVCHVCGAAYQEDDVI 163 (293)
T ss_pred ceeecccccceecceEEEEEEeccceec-cHHHHHHhhhccccccCCcccccCeE
Confidence 345787754 355668999999983 2221122 38999999987764433
No 178
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=44.45 E-value=2.6e+02 Score=25.77 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=39.0
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH----hHHHHhhhhHHHHHHHHHhHHHHH
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ----SWHYKAKYNESVVNALKNNLKQAV 146 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q----~Wq~~A~~~Ea~~~~Lr~~Lqq~~ 146 (239)
|..++.+....-......|.+|.++++.+..-.. .|..+-+..+-.+.-+.+.|++..
T Consensus 119 Iq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~ 180 (309)
T PF09728_consen 119 IQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQ 180 (309)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4445566666666678889999999888776553 455566666666666666666653
No 179
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=44.18 E-value=2.3e+02 Score=26.04 Aligned_cols=18 Identities=6% Similarity=0.067 Sum_probs=11.5
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 026366 58 YVRIQEGNLIKGVREMKQ 75 (239)
Q Consensus 58 ~l~~q~e~lr~~l~e~r~ 75 (239)
|++.|.++++..|+++.+
T Consensus 174 fl~~ql~~~~~~l~~ae~ 191 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKA 191 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666643
No 180
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=43.84 E-value=54 Score=24.25 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=41.0
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 88 EVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 88 ~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
.++++|.-.|.+|+.+...+-.+.|++-++- ..|...-...+|.++.|-..|..+
T Consensus 16 ~~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL---~~W~~~~g~~~At~~~L~~aLr~~ 70 (80)
T cd08313 16 EFVRRLGLSDNEIERVELDHRRCRDAQYQML---KVWKERGPRPYATLQHLLSVLRDM 70 (80)
T ss_pred HHHHHcCCCHHHHHHHHHhCCChHHHHHHHH---HHHHHhcCCCcchHHHHHHHHHHc
Confidence 3678888889999999888887777766654 689887665567777776555544
No 181
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=43.80 E-value=2.7e+02 Score=25.89 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=39.1
Q ss_pred HhhhhhcchHHHHHHHH--------HHHHHHHHHHHhHHHHHh-HHHHhhhhHHHHHHHHHhHHHHHH
Q 026366 89 VGRRLHGKEMEIEVMNC--------KNKELVEKIKQVSMEVQS-WHYKAKYNESVVNALKNNLKQAVA 147 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~--------~n~eLeErl~ql~~E~q~-Wq~~A~~~Ea~~~~Lr~~Lqq~~~ 147 (239)
..+||.....|.+.+.. -...|.-++.++..|.-. -.......|.+|+.|...|+.+..
T Consensus 82 LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 82 LLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555555555555432 245677788888877653 344667788999999999988853
No 182
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.68 E-value=1.2e+02 Score=21.56 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHhc
Q 026366 101 EVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQG 149 (239)
Q Consensus 101 e~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~~ 149 (239)
+.+--+.+-+++.+..|..... .....+..|+..|+.+....
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~-------~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVT-------EQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333 33345566666666665444
No 183
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.57 E-value=2.1e+02 Score=24.52 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=24.0
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
+++++.+|..+..+..+|++....+..+.. .....+..|++..+.+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke-------~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKE-------AKDKEISRLKSEAEAL 171 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 444555666666666666665554443333 2334555555554444
No 184
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=43.54 E-value=7.8 Score=27.75 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=7.8
Q ss_pred CCCCCCcccccc
Q 026366 221 GVCPVCKAMRTA 232 (239)
Q Consensus 221 ~~CPvCr~~i~~ 232 (239)
..||.|+.+|.-
T Consensus 56 G~CP~C~~~i~~ 67 (70)
T PF11793_consen 56 GECPYCSSPISW 67 (70)
T ss_dssp EE-TTT-SEEEG
T ss_pred cCCcCCCCeeeE
Confidence 479999998864
No 185
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=43.49 E-value=1.4e+02 Score=22.33 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=13.7
Q ss_pred HHhhHHHHHHHHHHHHHHhHHHHHHHHH
Q 026366 47 EIGRQKEEFDQYVRIQEGNLIKGVREMK 74 (239)
Q Consensus 47 ~l~~q~~eid~~l~~q~e~lr~~l~e~r 74 (239)
.++.+...+-.-|....++|+..|++.+
T Consensus 32 ~l~~~~~~~~~~I~~~f~~l~~~L~~~e 59 (127)
T smart00502 32 EVEENAADVEAQIKAAFDELRNALNKRK 59 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555665555543
No 186
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=43.28 E-value=18 Score=39.37 Aligned_cols=46 Identities=24% Similarity=0.593 Sum_probs=33.7
Q ss_pred ccccccccccccceEEeC-CCCcc----cccchHhcC--C-----CCCCCcccccceEE
Q 026366 189 QMICRACNIQEVSILLLP-CRHLC----LCKDCEGLI--G-----VCPVCKAMRTASVE 235 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllP-C~Hlc----~C~~C~~~l--~-----~CPvCr~~i~~~v~ 235 (239)
.+.|+-|...... .+.| ||+.. .|..|...+ . .||-|..+......
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~ 724 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQR 724 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccce
Confidence 3689999986544 4777 88552 599998765 3 89999988776544
No 187
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.21 E-value=3.6e+02 Score=27.11 Aligned_cols=61 Identities=26% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHHHHhHHHHHHHH---------HHHHHHHHHHHHHHH---HhhhhhcchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 59 VRIQEGNLIKGVREM---------KQRHTYSFLSAIEKE---VGRRLHGKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 59 l~~q~e~lr~~l~e~---------r~r~~r~Ll~~~e~~---~~~rlreke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
|+.+.+.||..|+++ ..+++...++.+|.. +.++.+..+.|+.++++.|.-|.+.|..+..
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467777888888777 123345566666655 4456666677888888877777766665554
No 188
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=43.13 E-value=3.6e+02 Score=27.10 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=6.6
Q ss_pred hhhhcchHHHHHHHHH
Q 026366 91 RRLHGKEMEIEVMNCK 106 (239)
Q Consensus 91 ~rlreke~Eie~~~~~ 106 (239)
.|+++.+.+|..+..+
T Consensus 220 ~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 220 QRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 189
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.00 E-value=6.9 Score=39.70 Aligned_cols=39 Identities=31% Similarity=0.682 Sum_probs=28.6
Q ss_pred ccccccccccccc----eEEeCCCCcccccchHhcC--CCCCCCccc
Q 026366 189 QMICRACNIQEVS----ILLLPCRHLCLCKDCEGLI--GVCPVCKAM 229 (239)
Q Consensus 189 ~~~C~iC~~~~~~----vlllPC~Hlc~C~~C~~~l--~~CPvCr~~ 229 (239)
-..|.||...... -+++-|||. .|.-|...+ ..|| |...
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCcc
Confidence 3478888654443 456679999 899999987 7888 5443
No 190
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=42.52 E-value=58 Score=25.19 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 95 GKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 95 eke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
+.+.+++.+..+|..|.+.+..+..
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344666667777777777777754
No 191
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.41 E-value=9.4 Score=34.87 Aligned_cols=44 Identities=25% Similarity=0.528 Sum_probs=30.9
Q ss_pred ccccccccccccc----------ceEEeCCCCcccccchHh------cCCCCCCCcccccc
Q 026366 188 MQMICRACNIQEV----------SILLLPCRHLCLCKDCEG------LIGVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~----------~vlllPC~Hlc~C~~C~~------~l~~CPvCr~~i~~ 232 (239)
+...|.||..+-- ++.-+.|+|. +=..|-. +.+.||.|...+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4458999987543 3456899998 4455533 45899999887653
No 192
>PF14282 FlxA: FlxA-like protein
Probab=42.27 E-value=1.4e+02 Score=22.97 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHH-HH---HhHHHHhhhhHHHHHHHHHhHHHHHHh
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSM-EV---QSWHYKAKYNESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~-E~---q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~ 148 (239)
+..|+.+.++...|.+.|+.|.. +. ..-+.....-.+-+..|.+.|.++...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777788888888888877776 22 122233333334555566666655443
No 193
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=42.22 E-value=1.4e+02 Score=21.96 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=14.2
Q ss_pred cccchHHHHHHhhHHHHHHHH
Q 026366 38 LSLGDNLKLEIGRQKEEFDQY 58 (239)
Q Consensus 38 ~~~~~~l~~~l~~q~~eid~~ 58 (239)
++.++.|+.-|..-.+|++++
T Consensus 9 ~~p~~~Ls~vl~~LqDE~~hm 29 (79)
T PF06657_consen 9 QSPGEALSEVLKALQDEFGHM 29 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777763
No 194
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=41.63 E-value=3.2e+02 Score=26.02 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhhhcchHHHHHH
Q 026366 78 TYSFLSAIEKEVGRRLHGKEMEIEVM 103 (239)
Q Consensus 78 ~r~Ll~~~e~~~~~rlreke~Eie~~ 103 (239)
...+-..+...+..+|..+...++.+
T Consensus 314 L~~l~~rL~~a~~~~L~~~~~~L~~l 339 (438)
T PRK00286 314 LDRLQQRLQRALERRLRLAKQRLERL 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555443
No 195
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=41.28 E-value=1.2e+02 Score=25.10 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 026366 98 MEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~ 118 (239)
.|...++.+...++.|+..+.
T Consensus 47 aeY~aAk~~~~~~e~rI~~L~ 67 (157)
T PRK01885 47 ADYIYGKKRLREIDRRVRFLT 67 (157)
T ss_pred hcHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544
No 196
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.24 E-value=17 Score=34.94 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=26.5
Q ss_pred cccccccccccccc-eEEeCCCCcccccchHhc
Q 026366 188 MQMICRACNIQEVS-ILLLPCRHLCLCKDCEGL 219 (239)
Q Consensus 188 ~~~~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~ 219 (239)
....|-+|.+.... ++.++|+|. +|..|...
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~ 100 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHP-FCPPCWTG 100 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcH-HHHHHHHH
Confidence 44589999998885 899999999 89999764
No 197
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=41.12 E-value=2e+02 Score=23.55 Aligned_cols=50 Identities=8% Similarity=0.222 Sum_probs=30.4
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHhhhhhc
Q 026366 42 DNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRH--TYSFLSAIEKEVGRRLHG 95 (239)
Q Consensus 42 ~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~--~r~Ll~~~e~~~~~rlre 95 (239)
=.|+.-|.++...+|.=| +.|+..|.+.-+.+ +..++..+......+...
T Consensus 21 C~i~~~L~k~~~~v~~~i----~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 21 CGIQDFLDKYERDVDKDI----QELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHccchHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 346667788887877644 34555555544433 366777777666666655
No 198
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=40.97 E-value=3e+02 Score=25.57 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=46.6
Q ss_pred HHHHHhhHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH----HHHHHHHHHHHHHHH
Q 026366 44 LKLEIGRQKEEFDQYV------RIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEM----EIEVMNCKNKELVEK 113 (239)
Q Consensus 44 l~~~l~~q~~eid~~l------~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~----Eie~~~~~n~eLeEr 113 (239)
+...|+.|+.-++..- --|.++.|...+|..+.+.|.+|+.|..+-...|...+. +-+.+..+.+-|+.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~Leav 83 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAV 83 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4445666666555422 356788999999999999999999887764333333332 333344444555544
Q ss_pred HHHhHH
Q 026366 114 IKQVSM 119 (239)
Q Consensus 114 l~ql~~ 119 (239)
|.++.+
T Consensus 84 LqRir~ 89 (324)
T PF12126_consen 84 LQRIRT 89 (324)
T ss_pred HHHHHh
Confidence 444443
No 199
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=40.92 E-value=54 Score=23.11 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhhcchHHHHHHHHHHHHHH
Q 026366 83 SAIEKEVGRRLHGKEMEIEVMNCKNKELV 111 (239)
Q Consensus 83 ~~~e~~~~~rlreke~Eie~~~~~n~eLe 111 (239)
.-+.+.-..-|+..-+||+++.++|.+|.
T Consensus 13 ~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 13 LFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33444444445555669999999988875
No 200
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.87 E-value=1.4e+02 Score=21.63 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E~q~Wq 125 (239)
..|++.+..+|..|.+.-..+..|++--+
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34777777777777777777777777555
No 201
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.69 E-value=3e+02 Score=25.43 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=10.7
Q ss_pred cccccccccccccccccccc
Q 026366 7 STGLRLSYEDDEHNSSVTSA 26 (239)
Q Consensus 7 stgl~l~~~~~~~~~~~~~~ 26 (239)
..+.|=+|.....-|+.+|+
T Consensus 6 P~~~~~~yg~ss~~SSsnSg 25 (305)
T PF15290_consen 6 PVNIRDSYGPSSTPSSSNSG 25 (305)
T ss_pred CCCCcccccCcCCcccCCCc
Confidence 34556667776544443443
No 202
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=40.60 E-value=81 Score=29.75 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHH
Q 026366 102 VMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVA 147 (239)
Q Consensus 102 ~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~ 147 (239)
.++.+..++++++..+..............+-.+..|...|+.+-.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777766665555555555556666677776643
No 203
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.45 E-value=3.7e+02 Score=26.50 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.3
Q ss_pred HhhHHH
Q 026366 48 IGRQKE 53 (239)
Q Consensus 48 l~~q~~ 53 (239)
|+.|..
T Consensus 282 L~~q~~ 287 (582)
T PF09731_consen 282 LEEQRE 287 (582)
T ss_pred HHHHHH
Confidence 334433
No 204
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=40.23 E-value=3e+02 Score=25.35 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=34.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHH
Q 026366 60 RIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNAL 138 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~L 138 (239)
..|.|+|++.- .+||=|.-+|=++++++ .++..+...|+..+.|.|.-|.|-...+..-.+--...+...|..|+.|
T Consensus 24 E~QldkLkKE~-qQrQfQleSlEAaLqKQ-KqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l 100 (307)
T PF10481_consen 24 EQQLDKLKKER-QQRQFQLESLEAALQKQ-KQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL 100 (307)
T ss_pred HHHHHHHHHHH-HHHHHhHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence 34555665432 22344445555555543 1222233335555666666555555555444433333333333333333
No 205
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=40.03 E-value=23 Score=32.78 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=28.5
Q ss_pred cccccccccccccceEEeCCC----CcccccchHhcC----CCCCCCccc
Q 026366 188 MQMICRACNIQEVSILLLPCR----HLCLCKDCEGLI----GVCPVCKAM 229 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~----Hlc~C~~C~~~l----~~CPvCr~~ 229 (239)
....|+||.+.+...++..-+ -+..|.-|...- ..||.|...
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 346899999999654442211 123799997643 799999874
No 206
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=39.89 E-value=1.2e+02 Score=25.09 Aligned_cols=22 Identities=5% Similarity=0.196 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~ 118 (239)
+.|...++.+.+.++.|++.+.
T Consensus 44 NaeY~aak~~~~~le~rI~~L~ 65 (156)
T TIGR01461 44 NADYQYGKKRLREIDRRVRFLT 65 (156)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665555
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.42 E-value=17 Score=33.88 Aligned_cols=44 Identities=30% Similarity=0.652 Sum_probs=34.2
Q ss_pred ccccccccc----ccceEEeCCCCcccccchHhcC----CCCCCCcccccceE
Q 026366 190 MICRACNIQ----EVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTASV 234 (239)
Q Consensus 190 ~~C~iC~~~----~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v 234 (239)
..|.+|++- ...++=.||+|. +|..|-..+ ..||.||.+....+
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 689999983 344566778888 899998765 79999998776544
No 208
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.19 E-value=80 Score=27.42 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
+-|+-+++++.++|+++|..+..+..
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777665554
No 209
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=38.99 E-value=16 Score=35.86 Aligned_cols=28 Identities=25% Similarity=0.848 Sum_probs=22.4
Q ss_pred CcccccccccccccccceEEeCCCCcc--cccchHh
Q 026366 185 PMKMQMICRACNIQEVSILLLPCRHLC--LCKDCEG 218 (239)
Q Consensus 185 ~~~~~~~C~iC~~~~~~vlllPC~Hlc--~C~~C~~ 218 (239)
.+.....|-||.++.+ |.|+. .|..|-.
T Consensus 265 ~~~~e~~CAVCgDnAa------CqHYGvRTCEGCKG 294 (605)
T KOG4217|consen 265 SLSAEGLCAVCGDNAA------CQHYGVRTCEGCKG 294 (605)
T ss_pred CCCccceeeecCChHH------hhhcCccccccchH
Confidence 3456779999999987 99986 4888854
No 210
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.98 E-value=4.9e+02 Score=27.45 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=25.4
Q ss_pred hHHHHHHhhHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026366 42 DNLKLEIGRQKEEFDQ---YVRIQEGNLIKGVREMKQRHTYSFLSAIE 86 (239)
Q Consensus 42 ~~l~~~l~~q~~eid~---~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e 86 (239)
+.|-+-||.|-+|--. +|+.-+|+|.+.++-+|. .+..|...+.
T Consensus 433 qSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~-Enk~~~~~~~ 479 (861)
T PF15254_consen 433 QSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKE-ENKRLRKMFQ 479 (861)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4455566666666322 556667888887776643 3444444443
No 211
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.96 E-value=1.4e+02 Score=21.60 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 105 CKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 105 ~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
+...+-.+.|.+|..|++.+...-..+..++..||+.+...
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~ 45 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKEL 45 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555566666666666666655555556666666655444
No 212
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=38.94 E-value=3.6e+02 Score=25.87 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 026366 100 IEVMNCKNKELVEKIKQVSME 120 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~E 120 (239)
.+.+..+..+|.++++.+..+
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~ 88 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAE 88 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566655555533
No 213
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=38.80 E-value=12 Score=21.15 Aligned_cols=17 Identities=35% Similarity=0.979 Sum_probs=9.1
Q ss_pred ccchHhcC----CCCCCCccc
Q 026366 213 CKDCEGLI----GVCPVCKAM 229 (239)
Q Consensus 213 C~~C~~~l----~~CPvCr~~ 229 (239)
|..|...+ ..||.|..+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 44454433 566666654
No 214
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.75 E-value=3.2e+02 Score=25.24 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=17.4
Q ss_pred chHHHHHHhhHHHHHHHHHHHHHHhHHHHH
Q 026366 41 GDNLKLEIGRQKEEFDQYVRIQEGNLIKGV 70 (239)
Q Consensus 41 ~~~l~~~l~~q~~eid~~l~~q~e~lr~~l 70 (239)
+++...-++.|=.=|=.|=|++...+|..|
T Consensus 108 ~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeW 137 (312)
T smart00787 108 SPDVKLLMDKQFQLVKTFARLEAKKMWYEW 137 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666555555555566665555555
No 215
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=38.45 E-value=7.3 Score=29.83 Aligned_cols=40 Identities=25% Similarity=0.678 Sum_probs=30.9
Q ss_pred CcccccccccccccccceEEeCCCCcccccchHhcCCCCCCCccc
Q 026366 185 PMKMQMICRACNIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAM 229 (239)
Q Consensus 185 ~~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~ 229 (239)
.++....|..|..+..-... |. +|..|+.....|+-|..+
T Consensus 51 pLt~p~kC~~C~qktVk~AY----h~-iC~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 51 PLTQPKKCNKCQQKTVKHAY----HV-ICDPCAKELKVCAKCGKP 90 (92)
T ss_pred cCCCCccccccccchHHHHH----HH-HHHHHHHhhccCcccCCC
Confidence 34455689999887765443 44 799999999999999875
No 216
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.41 E-value=69 Score=28.28 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHH
Q 026366 63 EGNLIKGVREMKQRHTYSFLSAIEKE-------VGRRLHGKEMEIEVMNCKNKELVEKIKQVSME 120 (239)
Q Consensus 63 ~e~lr~~l~e~r~r~~r~Ll~~~e~~-------~~~rlreke~Eie~~~~~n~eLeErl~ql~~E 120 (239)
-.||++.=+--|.++..+|+.-.=+. +++++--.|.-|.++..++++|+.|++.+.++
T Consensus 13 f~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 13 FHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455544445566666665433222 44554445667888888999999999998875
No 217
>smart00338 BRLZ basic region leucin zipper.
Probab=38.35 E-value=1.3e+02 Score=20.65 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHH
Q 026366 106 KNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKN 140 (239)
Q Consensus 106 ~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~ 140 (239)
...+|+.++..+..++..++.....-+..+..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888776544444444444443
No 218
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.06 E-value=12 Score=39.86 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=24.0
Q ss_pred cccccccccccccc--ceE-----EeCCCCcccccchHh------cCCCCCCCccccc
Q 026366 187 KMQMICRACNIQEV--SIL-----LLPCRHLCLCKDCEG------LIGVCPVCKAMRT 231 (239)
Q Consensus 187 ~~~~~C~iC~~~~~--~vl-----llPC~Hlc~C~~C~~------~l~~CPvCr~~i~ 231 (239)
.+...|.|||.--. +-- --.|+|- +=..|-- .-..||+||..|+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCccccccc
Confidence 46679999997321 111 1123333 2223311 1279999998876
No 219
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=37.98 E-value=17 Score=28.17 Aligned_cols=43 Identities=23% Similarity=0.557 Sum_probs=29.6
Q ss_pred ccccccccccceEEeCCCC------cccccchHhcC--------CCCCCCcccccce
Q 026366 191 ICRACNIQEVSILLLPCRH------LCLCKDCEGLI--------GVCPVCKAMRTAS 233 (239)
Q Consensus 191 ~C~iC~~~~~~vlllPC~H------lc~C~~C~~~l--------~~CPvCr~~i~~~ 233 (239)
.|--|.+.-.+--|.|=+| ..+|..|-..+ ..||.|+++++-.
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
Confidence 4556666666666666664 35677786654 6799999998754
No 220
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=37.83 E-value=2.3e+02 Score=23.36 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHhc
Q 026366 98 MEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQG 149 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~~ 149 (239)
.-++++..-...++..+..+..|...++.+++..+.-+..|+..|...+...
T Consensus 40 ~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 40 EKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566667777777888888888888888888999999999999988776543
No 221
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.83 E-value=18 Score=24.61 Aligned_cols=16 Identities=38% Similarity=1.180 Sum_probs=11.3
Q ss_pred cccchHhc----CCCCCCCc
Q 026366 212 LCKDCEGL----IGVCPVCK 227 (239)
Q Consensus 212 ~C~~C~~~----l~~CPvCr 227 (239)
+|.+|... +..||.|.
T Consensus 31 FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 31 FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp B-HHHHHTTTTTS-SSSTT-
T ss_pred cccCcChhhhccccCCcCCC
Confidence 89999875 48999995
No 222
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.78 E-value=2.4e+02 Score=24.74 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~ 119 (239)
|++.+...|..|+..+.....
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~ 84 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQ 84 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333
No 223
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=37.70 E-value=4.3e+02 Score=27.66 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=28.9
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHH
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLK 143 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lq 143 (239)
+.++||+|+.|-+.+-.++.+ .|..|..|.+....+-...|.+-..++.++.
T Consensus 475 iIkKLRAk~ke~etl~~K~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~ 526 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLEEKKGE---LITKLQSEENKLKSILRDKEETEKLLQETIE 526 (961)
T ss_pred HHHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 678899999888877666543 3344444444444444444444333443333
No 224
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.62 E-value=2.6e+02 Score=28.49 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=15.2
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 90 GRRLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 90 ~~rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
.+.+++++.+|+.+.++..+-..++.+|.
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666555555444444444
No 225
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=37.46 E-value=2.9e+02 Score=24.37 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHH
Q 026366 79 YSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNAL 138 (239)
Q Consensus 79 r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~L 138 (239)
..||..|.+.+.....+-..=.+.+.....+...+|..+. .|-..|......++.|
T Consensus 159 ~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~----~~l~eA~~~~~ea~~l 214 (264)
T PF06008_consen 159 EDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLR----DLLNEAQNKTREAEDL 214 (264)
T ss_pred HHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3444444443333333333222334444444444444333 4444444444444444
No 226
>PLN02436 cellulose synthase A
Probab=37.38 E-value=23 Score=37.97 Aligned_cols=43 Identities=21% Similarity=0.579 Sum_probs=31.6
Q ss_pred cccccccccccc----ceEEeCCCC--cccccchHhcC-----CCCCCCccccc
Q 026366 189 QMICRACNIQEV----SILLLPCRH--LCLCKDCEGLI-----GVCPVCKAMRT 231 (239)
Q Consensus 189 ~~~C~iC~~~~~----~vlllPC~H--lc~C~~C~~~l-----~~CPvCr~~i~ 231 (239)
...|.||.+.-- .=+|+.|.. +.+|..|..-- +.||.|++...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 348999999632 247788863 34899998642 89999998765
No 227
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.21 E-value=3.8e+02 Score=27.98 Aligned_cols=11 Identities=36% Similarity=0.595 Sum_probs=6.1
Q ss_pred hhHHHHHHHHH
Q 026366 49 GRQKEEFDQYV 59 (239)
Q Consensus 49 ~~q~~eid~~l 59 (239)
.....+++.+|
T Consensus 507 ~~~~~~~~~li 517 (771)
T TIGR01069 507 GEFKEEINVLI 517 (771)
T ss_pred HhhHHHHHHHH
Confidence 34444566666
No 228
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.14 E-value=2.2e+02 Score=22.91 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHH
Q 026366 55 FDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESV 134 (239)
Q Consensus 55 id~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~ 134 (239)
.=.-|-.|.|++-..|..+|+ |.-.=|.. +..+|.+-.+-.+.+.....++.+.+.++..+...-+ .+
T Consensus 44 A~~~v~kql~~vs~~l~~tKk-hLsqRId~----vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~-------~~ 111 (126)
T PF07889_consen 44 AVASVSKQLEQVSESLSSTKK-HLSQRIDR----VDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ-------QM 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HH
Confidence 333567788888888888844 44333333 3334445455555566666666666666666655443 45
Q ss_pred HHHHHHhHHHH
Q 026366 135 VNALKNNLKQA 145 (239)
Q Consensus 135 ~~~Lr~~Lqq~ 145 (239)
|..|..+|..+
T Consensus 112 V~~Le~ki~~i 122 (126)
T PF07889_consen 112 VEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHH
Confidence 55666665544
No 229
>PRK10963 hypothetical protein; Provisional
Probab=37.08 E-value=83 Score=27.38 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 026366 99 EIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~ 118 (239)
.+++++.||.+|+.++.++-
T Consensus 45 Q~~~LR~r~~~Le~~l~~Li 64 (223)
T PRK10963 45 QMARQRNHIHVLEEEMTLLM 64 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444
No 230
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.67 E-value=21 Score=20.87 Aligned_cols=17 Identities=29% Similarity=0.909 Sum_probs=9.4
Q ss_pred ccchHhcC----CCCCCCccc
Q 026366 213 CKDCEGLI----GVCPVCKAM 229 (239)
Q Consensus 213 C~~C~~~l----~~CPvCr~~ 229 (239)
|..|...+ ..||.|.-.
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCC
Confidence 45555443 567777544
No 231
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=36.53 E-value=13 Score=24.96 Aligned_cols=10 Identities=30% Similarity=0.869 Sum_probs=3.4
Q ss_pred CCCCCccccc
Q 026366 222 VCPVCKAMRT 231 (239)
Q Consensus 222 ~CPvCr~~i~ 231 (239)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 5666665543
No 232
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=36.14 E-value=6e+02 Score=27.65 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=17.9
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 91 RRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 91 ~rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
.++.+.+.+|+.++.+..++.+.+..+..+.+
T Consensus 260 ~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~ 291 (1163)
T COG1196 260 EELEEAEKEIEELKSELEELREELEELQEELL 291 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666655544433
No 233
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=35.49 E-value=15 Score=24.86 Aligned_cols=12 Identities=50% Similarity=0.966 Sum_probs=5.7
Q ss_pred CCCCCcccccce
Q 026366 222 VCPVCKAMRTAS 233 (239)
Q Consensus 222 ~CPvCr~~i~~~ 233 (239)
.||+|..++..+
T Consensus 36 ~CP~C~a~K~~F 47 (50)
T cd00730 36 VCPVCGAGKDDF 47 (50)
T ss_pred CCCCCCCcHHHc
Confidence 455555444433
No 234
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=35.32 E-value=17 Score=34.43 Aligned_cols=24 Identities=25% Similarity=0.704 Sum_probs=14.8
Q ss_pred ccccccccccceEEeCCCCcccccchHh
Q 026366 191 ICRACNIQEVSILLLPCRHLCLCKDCEG 218 (239)
Q Consensus 191 ~C~iC~~~~~~vlllPC~Hlc~C~~C~~ 218 (239)
.|++|.++....-. | +-.|..|-.
T Consensus 17 lCPVCGDkVSGYHY---G-LLTCESCKG 40 (475)
T KOG4218|consen 17 LCPVCGDKVSGYHY---G-LLTCESCKG 40 (475)
T ss_pred ccccccCcccccee---e-eeehhhhhh
Confidence 79999998776311 1 115777743
No 235
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.66 E-value=5.4e+02 Score=26.63 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=20.0
Q ss_pred HHHHhhhhHHHHHHHHHhHHHHHHhcc
Q 026366 124 WHYKAKYNESVVNALKNNLKQAVAQGS 150 (239)
Q Consensus 124 Wq~~A~~~Ea~~~~Lr~~Lqq~~~~~~ 150 (239)
-+..-+..|..|..|+.+|.|+++-..
T Consensus 634 ~~~~~~~~d~ei~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 634 AQGQLRKKDKEIEELKAKIAQLLAVMP 660 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334445677889999999999987653
No 236
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=34.63 E-value=5.1e+02 Score=26.38 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=55.4
Q ss_pred ccchHHHHHHhhHHHH-HHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHH---HhhhhhcchHHHHHHHHHHHHH
Q 026366 39 SLGDNLKLEIGRQKEE-FDQYVRIQEGNL----IKGVREMKQRHTYSFLSAIEKE---VGRRLHGKEMEIEVMNCKNKEL 110 (239)
Q Consensus 39 ~~~~~l~~~l~~q~~e-id~~l~~q~e~l----r~~l~e~r~r~~r~Ll~~~e~~---~~~rlreke~Eie~~~~~n~eL 110 (239)
.+.++ .+|+.|-.| =|.|+++.+++| ....+...++....=+..++.. +..++..|+.|+.++..++.++
T Consensus 158 AlsQN--~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 158 ALSQN--RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY 235 (617)
T ss_pred HHHhH--HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444 478888888 477999999874 3344555555554444444433 3456778888888888877776
Q ss_pred HHHHHHhHHHHHhHHHHhhhhHH
Q 026366 111 VEKIKQVSMEVQSWHYKAKYNES 133 (239)
Q Consensus 111 eErl~ql~~E~q~Wq~~A~~~Ea 133 (239)
...+.+-.+. ++.++.++|+
T Consensus 236 ~~~Lqqy~a~---~q~l~~e~e~ 255 (617)
T PF15070_consen 236 LGHLQQYVAA---YQQLASEKEE 255 (617)
T ss_pred HHHHHHHHHH---HHHHHHHHHH
Confidence 6666655432 3344444443
No 237
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=34.40 E-value=5.7e+02 Score=26.82 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhhhcchH---HHHH--------HHH-HHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHh
Q 026366 79 YSFLSAIEKEVGRRLHGKEM---EIEV--------MNC-KNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNN 141 (239)
Q Consensus 79 r~Ll~~~e~~~~~rlreke~---Eie~--------~~~-~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~ 141 (239)
..=|+++|+.+..-.+|-|. |+.+ +.+ ..+|-.|.|+++..|+.-....-..+.+.+..||++
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk 482 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAK 482 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55677888876655555443 2222 122 344556778888887754444444444444444443
No 238
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=34.30 E-value=3.9e+02 Score=26.71 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHhh
Q 026366 100 IEVMNCKNKELVEKIKQVSMEVQSWHYKAK 129 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~E~q~Wq~~A~ 129 (239)
.+.+..+.....|||.++..|...|.-.|+
T Consensus 304 ~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQ 333 (518)
T PF10212_consen 304 REGLAQQVQQSQEKIAKLEQEKEHWMLEAQ 333 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888888888875444
No 239
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=33.95 E-value=1.4e+02 Score=22.26 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSME 120 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E 120 (239)
..+|++.+.+..+|++|++.|...
T Consensus 7 ~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 7 RAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999998853
No 240
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=33.93 E-value=17 Score=27.00 Aligned_cols=43 Identities=26% Similarity=0.662 Sum_probs=17.0
Q ss_pred cccccccccccc----ceEEeCCCC--cccccchHhc-----CCCCCCCccccc
Q 026366 189 QMICRACNIQEV----SILLLPCRH--LCLCKDCEGL-----IGVCPVCKAMRT 231 (239)
Q Consensus 189 ~~~C~iC~~~~~----~vlllPC~H--lc~C~~C~~~-----l~~CPvCr~~i~ 231 (239)
...|.||.+... .-+|+-|.. +.+|..|..- .+.||.|+++..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 448999988432 245666653 2368888753 389999997754
No 241
>PLN03188 kinesin-12 family protein; Provisional
Probab=33.61 E-value=7.2e+02 Score=27.77 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHh
Q 026366 98 MEIEVMNCKNKELVEKIKQVSMEVQS 123 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~E~q~ 123 (239)
.|-+-+++.|.-|+-+|+.....+|+
T Consensus 1173 ker~~~~~enk~l~~qlrdtaeav~a 1198 (1320)
T PLN03188 1173 KERRYLRDENKSLQAQLRDTAEAVQA 1198 (1320)
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 34445667788888888766655443
No 242
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.39 E-value=95 Score=21.69 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
++..+.+++.+++.....+..+..
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 243
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=33.39 E-value=6.1e+02 Score=26.85 Aligned_cols=87 Identities=17% Similarity=0.268 Sum_probs=53.9
Q ss_pred hHHHHHHhhHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhcchH----------
Q 026366 42 DNLKLEIGRQKEEFDQ---------YVRIQEGNLIKGVREMKQRHTYSFLSAIEKE----VGRRLHGKEM---------- 98 (239)
Q Consensus 42 ~~l~~~l~~q~~eid~---------~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~----~~~rlreke~---------- 98 (239)
++|...++.-++||-. .++.|.+-.+.-.+|.+.+. -.+.++||.+ +..-++++++
T Consensus 109 ~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~-~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~ 187 (966)
T KOG4286|consen 109 QELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKE-PVIMSTLETARIFLTEQPLEGLEKYQEPRELPPE 187 (966)
T ss_pred HHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHH
Confidence 5566777777777543 56777777666666664443 4566777776 2222333321
Q ss_pred -HHHH----HHHHHHHHHHHHHHhHHHHHhHHHHhh
Q 026366 99 -EIEV----MNCKNKELVEKIKQVSMEVQSWHYKAK 129 (239)
Q Consensus 99 -Eie~----~~~~n~eLeErl~ql~~E~q~Wq~~A~ 129 (239)
.+++ +.++..++.+.+..+.+++..|+....
T Consensus 188 ~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~ 223 (966)
T KOG4286|consen 188 ERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKID 223 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 2222 234456788889999999999997543
No 244
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=33.38 E-value=2.4e+02 Score=22.19 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 026366 101 EVMNCKNKELVEKIKQVSME 120 (239)
Q Consensus 101 e~~~~~n~eLeErl~ql~~E 120 (239)
+.+++...++..+|+.+...
T Consensus 51 ~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 51 QEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555543
No 245
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.05 E-value=3.3e+02 Score=23.74 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=6.6
Q ss_pred chHHHHHHhhHHHHHH
Q 026366 41 GDNLKLEIGRQKEEFD 56 (239)
Q Consensus 41 ~~~l~~~l~~q~~eid 56 (239)
+..+...|...+.+|.
T Consensus 15 ~~C~~~~L~~~~~~l~ 30 (302)
T PF10186_consen 15 ANCVNNRLLELRSELQ 30 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 246
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=32.87 E-value=2.1e+02 Score=21.42 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=32.1
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHH
Q 026366 94 HGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQ 144 (239)
Q Consensus 94 reke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq 144 (239)
.+.+.+|+++...-..|.+.+.+..+....|.... ..+...|.+-++.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~---~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEAN---REVSRRLDSAIET 82 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34456788888888888888888888888887633 3344444444443
No 247
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=32.63 E-value=22 Score=23.60 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=20.4
Q ss_pred ccccccccccceEEeCCCCcccccchHhcC
Q 026366 191 ICRACNIQEVSILLLPCRHLCLCKDCEGLI 220 (239)
Q Consensus 191 ~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l 220 (239)
.|.+|......-+.+ .+++ +|..|...+
T Consensus 1 ~CiiC~~~~~~GI~I-~~~f-IC~~CE~~i 28 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKF-ICSDCEKEI 28 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeE-ehHHHHHHh
Confidence 488898877764433 5666 899998866
No 248
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=32.51 E-value=10 Score=27.63 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=14.8
Q ss_pred ccccccccccceEEeCCCCcccccchHhcC---CCCCCCccccc
Q 026366 191 ICRACNIQEVSILLLPCRHLCLCKDCEGLI---GVCPVCKAMRT 231 (239)
Q Consensus 191 ~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l---~~CPvCr~~i~ 231 (239)
.|+.|...-...- +|+ .|..|.... ..||-|..+..
T Consensus 3 ~CP~C~~~L~~~~----~~~-~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 3 TCPKCQQELEWQG----GHY-HCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp B-SSS-SBEEEET----TEE-EETTT--EEEEEEE-TTT-SB-E
T ss_pred cCCCCCCccEEeC----CEE-ECccccccceecccCCCcccHHH
Confidence 4666665422211 344 566666543 56777766543
No 249
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.47 E-value=2.1e+02 Score=21.24 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=22.4
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
|+.+-..|.+++...|.-|.+.|..+.....
T Consensus 38 Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~ 68 (80)
T PF10224_consen 38 RVEEVKEENEKLESENEYLQQYIGNLMSSSS 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334466888888888888888888865443
No 250
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.17 E-value=4e+02 Score=24.42 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 026366 106 KNKELVEKIK 115 (239)
Q Consensus 106 ~n~eLeErl~ 115 (239)
+...|++.+.
T Consensus 185 ~~~~L~~e~~ 194 (325)
T PF08317_consen 185 RKAELEEELE 194 (325)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 251
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=32.13 E-value=2e+02 Score=20.94 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 026366 99 EIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~ 118 (239)
.+.+++.++..||.||..|.
T Consensus 58 ~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455566666666666654
No 252
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=32.04 E-value=2.3e+02 Score=21.50 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=37.6
Q ss_pred HhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 48 IGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 48 l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
+.....+++.-|..-.+.|-..-.-+=-.-+-+|=..-|.....++++...++..+.+.|..|..++.....|.+
T Consensus 6 ~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 6 LEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444454444433333333222222222233333334556667777777777777777777666655555544
No 253
>PRK14127 cell division protein GpsB; Provisional
Probab=31.97 E-value=2.4e+02 Score=22.10 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhHH
Q 026366 53 EEFDQYVRIQEGNLI 67 (239)
Q Consensus 53 ~eid~~l~~q~e~lr 67 (239)
.|+|.||..-.+.+-
T Consensus 26 ~EVD~FLd~V~~dye 40 (109)
T PRK14127 26 DEVDKFLDDVIKDYE 40 (109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 468888766555443
No 254
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.54 E-value=96 Score=27.36 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=16.1
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHH
Q 026366 90 GRRLHGKEMEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 90 ~~rlreke~Eie~~~~~n~eLeErl~q 116 (239)
.++|.+...|||.+..+.+.|.+++..
T Consensus 168 e~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 168 ERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 344555556666666666666666543
No 255
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=31.46 E-value=3.1e+02 Score=22.88 Aligned_cols=25 Identities=28% Similarity=0.221 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 95 GKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 95 eke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
.|+.|..++..+..+-++++.++..
T Consensus 102 kKD~Ea~~L~~KLkeEq~kv~~ME~ 126 (152)
T PF11500_consen 102 KKDAEAMRLAEKLKEEQEKVAEMER 126 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888877777663
No 256
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.37 E-value=2.8e+02 Score=22.32 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=37.8
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHH
Q 026366 42 DNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 42 ~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
.++.++|.+=..+.+++++-...+.. ..++.-.++++ +++........+++++..+.+..
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~---------~~k~~ae~a~~-----------~L~~~~~~~~~i~e~~~kl~~~~ 82 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYN---------EEKQEAEAAEA-----------ELAELKELYAEIEEKIEKLKQDS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHHHHhc
Confidence 45777777777778877776654443 33333344444 55556666677777777777654
Q ss_pred H
Q 026366 122 Q 122 (239)
Q Consensus 122 q 122 (239)
.
T Consensus 83 ~ 83 (126)
T PF09403_consen 83 K 83 (126)
T ss_dssp G
T ss_pred c
Confidence 3
No 257
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=31.35 E-value=3.8e+02 Score=27.29 Aligned_cols=76 Identities=11% Similarity=0.205 Sum_probs=45.5
Q ss_pred HhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 026366 48 IGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 48 l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq 125 (239)
+++|-.++.+-|....++.-....|.|. ..+.+...+ ..+..|+...+.+++....+...|++.+..+..--..|.
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~-~~~~~~~~~-~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRV-KTEQAQASV-HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 3444444554443344444444555522 333333333 346667777788888888888899988887776556675
No 258
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.35 E-value=38 Score=36.28 Aligned_cols=47 Identities=19% Similarity=0.408 Sum_probs=33.4
Q ss_pred cccccccccccccceEEeC-CCC----cccccchHhcC--CCCCCCcccccceEE
Q 026366 188 MQMICRACNIQEVSILLLP-CRH----LCLCKDCEGLI--GVCPVCKAMRTASVE 235 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllP-C~H----lc~C~~C~~~l--~~CPvCr~~i~~~v~ 235 (239)
..+.|.-|.... .....| ||. ..+|..|.... ..||-|.........
T Consensus 625 g~RfCpsCG~~t-~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~~s~ 678 (1121)
T PRK04023 625 GRRKCPSCGKET-FYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYSK 678 (1121)
T ss_pred cCccCCCCCCcC-CcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCccce
Confidence 456899998874 334556 774 35799997765 679999887766443
No 259
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=31.11 E-value=3.3e+02 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=13.4
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 026366 60 RIQEGNLIKGVREMKQRH 77 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~ 77 (239)
..+++++-..|+.+|+|.
T Consensus 169 ~~~~qe~naeL~rarqre 186 (916)
T KOG0249|consen 169 EEQLEELNAELQRARQRE 186 (916)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567778888888887764
No 260
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.05 E-value=3.8e+02 Score=23.74 Aligned_cols=72 Identities=25% Similarity=0.360 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhhhh----cchHHHHHHHHHHHHHHHHHHHhHHHHHh--------HHHHhhhhHHHHHHHHHhH
Q 026366 75 QRHTYSFLSAIEKEVGRRLH----GKEMEIEVMNCKNKELVEKIKQVSMEVQS--------WHYKAKYNESVVNALKNNL 142 (239)
Q Consensus 75 ~r~~r~Ll~~~e~~~~~rlr----eke~Eie~~~~~n~eLeErl~ql~~E~q~--------Wq~~A~~~Ea~~~~Lr~~L 142 (239)
-++++.|.+.+.+...+-+. ||..-+..+.++..|.+|.+.|++.|+.. ...+-++-....+.|+..+
T Consensus 9 Eqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~ 88 (220)
T KOG1666|consen 9 EQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKREL 88 (220)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888877665443 55556777888889999999999998842 2222233334444555555
Q ss_pred HHHH
Q 026366 143 KQAV 146 (239)
Q Consensus 143 qq~~ 146 (239)
+...
T Consensus 89 k~~~ 92 (220)
T KOG1666|consen 89 KRTT 92 (220)
T ss_pred HHhh
Confidence 5554
No 261
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=31.00 E-value=2.1e+02 Score=24.41 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 026366 104 NCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 104 ~~~n~eLeErl~ql~~E~q 122 (239)
.++..++++++.++..|.+
T Consensus 152 ~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 152 KKKREELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 262
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=30.70 E-value=1e+02 Score=25.00 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026366 54 EFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRL 93 (239)
Q Consensus 54 eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rl 93 (239)
+|| .++...+..++..+|. -|..|+.++.+|..+.++|
T Consensus 87 dID-~~~a~i~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~ 124 (136)
T PRK13447 87 DLA-RLEAVVRAVRAAQLDA-ARRARVEQTRLHAQAVRQL 124 (136)
T ss_pred hcC-HHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 344 3444445555555444 5566778888888877765
No 263
>PRK15396 murein lipoprotein; Provisional
Probab=30.70 E-value=2.2e+02 Score=21.00 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQ 144 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq 144 (239)
+++.+..+...|..++.++..+.++-+.-+.....+++.-..+|+-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888888888877776666655566555555553
No 264
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=30.42 E-value=1.4e+02 Score=32.58 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 026366 102 VMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 102 ~~~~~n~eLeErl~ql~~E~q 122 (239)
.+..++.+|++.+.++.++..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ 208 (1123)
T PRK11448 188 ELEEKQQELEAQLEQLQEKAA 208 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666665554443
No 265
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.10 E-value=1.8e+02 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHh
Q 026366 98 MEIEVMNCKNKELVEKIKQVSMEVQS 123 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~E~q~ 123 (239)
.|++.+.++..+++++|+.++.|+..
T Consensus 90 qElq~~saq~~dle~KIkeLEaE~~~ 115 (475)
T PRK13729 90 RELDVLNKQRGDDQRRIEKLGQDNAA 115 (475)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 35555566667777777766666553
No 266
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.97 E-value=5.3e+02 Score=25.09 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=14.9
Q ss_pred HHHHHHHH--HHHhHHHHHHHHHHHHHHHHH
Q 026366 54 EFDQYVRI--QEGNLIKGVREMKQRHTYSFL 82 (239)
Q Consensus 54 eid~~l~~--q~e~lr~~l~e~r~r~~r~Ll 82 (239)
.||.|.+. +.-.++..++..+..+...+-
T Consensus 162 ~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~ 192 (420)
T COG4942 162 RIDALKATLKQLAAVRAEIAAEQAELTTLLS 192 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37776633 334555556555554443333
No 267
>PLN02678 seryl-tRNA synthetase
Probab=29.93 E-value=5.3e+02 Score=25.13 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=30.3
Q ss_pred hHHHHHHhhHHH--H-HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHH
Q 026366 42 DNLKLEIGRQKE--E-FDQYVRIQEG--NLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 42 ~~l~~~l~~q~~--e-id~~l~~q~e--~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~q 116 (239)
+.+..-+.++.. + ||.+|.+-.+ ++...+++.|.+. ..+.+++....+.+ ++.+.+..+..+|.+.++.
T Consensus 16 ~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~er-----N~~sk~I~~~k~~~-~~~~~l~~~~~~Lk~ei~~ 89 (448)
T PLN02678 16 ELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEF-----NKLNKEVAKLKIAK-EDATELIAETKELKKEITE 89 (448)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHH
Confidence 334444444432 2 6777755433 2333344433332 23444443322222 2333444444455555554
Q ss_pred hHH
Q 026366 117 VSM 119 (239)
Q Consensus 117 l~~ 119 (239)
+..
T Consensus 90 le~ 92 (448)
T PLN02678 90 KEA 92 (448)
T ss_pred HHH
Confidence 443
No 268
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=29.91 E-value=25 Score=20.37 Aligned_cols=10 Identities=40% Similarity=0.710 Sum_probs=7.8
Q ss_pred CCCCCCcccc
Q 026366 221 GVCPVCKAMR 230 (239)
Q Consensus 221 ~~CPvCr~~i 230 (239)
-.||+|...+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3699998776
No 269
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=29.86 E-value=20 Score=20.57 Aligned_cols=9 Identities=44% Similarity=1.010 Sum_probs=5.4
Q ss_pred CCCCCCccc
Q 026366 221 GVCPVCKAM 229 (239)
Q Consensus 221 ~~CPvCr~~ 229 (239)
..||.|..+
T Consensus 17 ~fC~~CG~~ 25 (26)
T PF13248_consen 17 KFCPNCGAK 25 (26)
T ss_pred ccChhhCCC
Confidence 566666554
No 270
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.48 E-value=5.6e+02 Score=26.75 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.4
Q ss_pred HHHhHHHHHHHH
Q 026366 62 QEGNLIKGVREM 73 (239)
Q Consensus 62 q~e~lr~~l~e~ 73 (239)
..++|-..|++.
T Consensus 517 ~~~~li~~l~~~ 528 (782)
T PRK00409 517 KLNELIASLEEL 528 (782)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 271
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=29.41 E-value=1.7e+02 Score=23.79 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=13.2
Q ss_pred hhhhcchHHHHHHHHHHHHHHH
Q 026366 91 RRLHGKEMEIEVMNCKNKELVE 112 (239)
Q Consensus 91 ~rlreke~Eie~~~~~n~eLeE 112 (239)
..++.||.||..++.+..++.-
T Consensus 101 ~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 101 AELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777666665554443
No 272
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=29.04 E-value=22 Score=33.02 Aligned_cols=38 Identities=29% Similarity=0.761 Sum_probs=29.6
Q ss_pred cccccccccccceEEeC-CCCcccccchHhcC-----CCCCCCcc
Q 026366 190 MICRACNIQEVSILLLP-CRHLCLCKDCEGLI-----GVCPVCKA 228 (239)
Q Consensus 190 ~~C~iC~~~~~~vlllP-C~Hlc~C~~C~~~l-----~~CPvCr~ 228 (239)
..|..|..-..+.+-.| |+|. +|.+|-... -.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 68999988777766665 4566 999998742 79999976
No 273
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=28.85 E-value=4.1e+02 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHhHHHHhhhhH
Q 026366 111 VEKIKQVSMEVQSWHYKAKYNE 132 (239)
Q Consensus 111 eErl~ql~~E~q~Wq~~A~~~E 132 (239)
.+++.++..|...|+.++...+
T Consensus 158 ~dK~~~a~~Ev~e~e~k~~~a~ 179 (234)
T cd07665 158 PDKLQQAKDEIAEWESRVTQYE 179 (234)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777766554444
No 274
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=28.82 E-value=2e+02 Score=19.84 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 026366 54 EFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCK 106 (239)
Q Consensus 54 eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~ 106 (239)
-||.||.+ ||..|+++.. .+++.+-..-...|..+-.+++.++++
T Consensus 8 ~~d~yI~~----Lk~kLd~Kk~----Eil~~ln~EY~kiLk~r~~~lEevKrk 52 (56)
T PF08112_consen 8 TIDKYISI----LKSKLDEKKS----EILSNLNMEYEKILKQRRKELEEVKRK 52 (56)
T ss_pred hHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667654 6777777644 344444444444455544555555443
No 275
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.57 E-value=26 Score=32.34 Aligned_cols=28 Identities=21% Similarity=0.654 Sum_probs=24.5
Q ss_pred cccccccccccceEEeCCC----CcccccchHh
Q 026366 190 MICRACNIQEVSILLLPCR----HLCLCKDCEG 218 (239)
Q Consensus 190 ~~C~iC~~~~~~vlllPC~----Hlc~C~~C~~ 218 (239)
..|.+|.++--++-|+-|- |- ||..|..
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSR 300 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSR 300 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccc-eecccCH
Confidence 6899999999999999996 54 8999965
No 276
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=28.45 E-value=4.9e+02 Score=24.21 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 026366 98 MEIEVMNCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
+||.++..+...|+.+++++..|+..-+.
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q 262 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQ 262 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 58888888899999999999888865543
No 277
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=28.33 E-value=2.3e+02 Score=20.44 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=17.7
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 91 RRLHGKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 91 ~rlreke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
+-|+| +.|...++.+...++.|+..|..
T Consensus 40 GDlsE-NaeY~aAke~q~~le~rI~~Le~ 67 (74)
T PF03449_consen 40 GDLSE-NAEYHAAKERQAFLEARIRELEE 67 (74)
T ss_dssp SSSTS-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-chhHHHHHHHHHHHHHHHHHHHH
Confidence 44555 55666666666666666666653
No 278
>PRK11020 hypothetical protein; Provisional
Probab=28.00 E-value=3.1e+02 Score=21.85 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=44.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH-HHHHhHHHHH
Q 026366 44 LKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVE-KIKQVSMEVQ 122 (239)
Q Consensus 44 l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeE-rl~ql~~E~q 122 (239)
+..||++-.+.+|. +|..+.-+.+|-...+++..++ ||+.+.+++.-|.. +-..+..|.+
T Consensus 3 ~K~Eiq~L~drLD~--------~~~Klaaa~~rgd~~~i~qf~~-----------E~~~l~k~I~~lk~~~~~~lske~~ 63 (118)
T PRK11020 3 EKNEIKRLSDRLDA--------IRHKLAAASLRGDAEKYAQFEK-----------EKATLEAEIARLKEVQSQKLSKEAQ 63 (118)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHhcCCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677776666664 4556666666666666666665 77777777766664 4457778888
Q ss_pred hHHHHhhhh
Q 026366 123 SWHYKAKYN 131 (239)
Q Consensus 123 ~Wq~~A~~~ 131 (239)
.-....=+.
T Consensus 64 ~l~~lpF~R 72 (118)
T PRK11020 64 KLMKLPFSR 72 (118)
T ss_pred HHHcCCcch
Confidence 766544333
No 279
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=27.92 E-value=29 Score=24.19 Aligned_cols=19 Identities=42% Similarity=1.109 Sum_probs=15.9
Q ss_pred cccchHhcC--CCCCCCcccc
Q 026366 212 LCKDCEGLI--GVCPVCKAMR 230 (239)
Q Consensus 212 ~C~~C~~~l--~~CPvCr~~i 230 (239)
+|..|+..+ ..||.|...+
T Consensus 31 FC~~C~e~~l~~~CPNCgGel 51 (57)
T PF06906_consen 31 FCADCAETMLNGVCPNCGGEL 51 (57)
T ss_pred ccHHHHHHHhcCcCcCCCCcc
Confidence 799999877 8999997654
No 280
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.91 E-value=4.1e+02 Score=23.16 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=6.4
Q ss_pred HHhhHHHHHHHHHH
Q 026366 47 EIGRQKEEFDQYVR 60 (239)
Q Consensus 47 ~l~~q~~eid~~l~ 60 (239)
+.+.-+.+|+.+|.
T Consensus 35 ~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 35 ENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444555554
No 281
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=27.87 E-value=1.9e+02 Score=21.32 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=36.6
Q ss_pred HhhhhhcchHHHHHHHHHH-HHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHH
Q 026366 89 VGRRLHGKEMEIEVMNCKN-KELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQ 144 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n-~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq 144 (239)
++++|-=.+.+|+.+..++ -.|.+++.++- +.|+.......+++..|-.-|..
T Consensus 19 lar~LGlse~~Id~Ie~~~~~dl~eq~~~mL---~~W~~~~~~~~atv~~L~~AL~~ 72 (86)
T cd08779 19 IGLHLGLSYRELQRIKYNNRDDLDEQIFDML---FSWAQRQAGDPDAVGKLVTALEE 72 (86)
T ss_pred HHHHcCCCHHHHHHHHHHCccCHHHHHHHHH---HHHHHhcCCCchHHHHHHHHHHH
Confidence 6677888889999998887 45666655544 68988776666766655444433
No 282
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.79 E-value=2e+02 Score=19.63 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhHHHHHhHH
Q 026366 107 NKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 107 n~eLeErl~ql~~E~q~Wq 125 (239)
..+|++++..+..++....
T Consensus 28 ~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 28 IEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 283
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.69 E-value=4.4e+02 Score=23.51 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 026366 99 EIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~ 118 (239)
|++.++.-|..|=|++|.+.
T Consensus 115 Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 115 EVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999886
No 284
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=27.43 E-value=3.4e+02 Score=22.43 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=12.4
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
|+| +.|-..++++...++.|++.|.
T Consensus 43 lsE-Naey~aak~~q~~~e~RI~~L~ 67 (158)
T PRK05892 43 HGD-QAEAIQRADELARLDDRINELD 67 (158)
T ss_pred cch-hhhHHHHHHHHHHHHHHHHHHH
Confidence 444 3344445555555555555544
No 285
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.29 E-value=2.7e+02 Score=20.89 Aligned_cols=9 Identities=11% Similarity=0.582 Sum_probs=5.2
Q ss_pred HHHHHHHHH
Q 026366 54 EFDQYVRIQ 62 (239)
Q Consensus 54 eid~~l~~q 62 (239)
.+|.++.+.
T Consensus 27 ~vd~i~~ld 35 (108)
T PF02403_consen 27 DVDEIIELD 35 (108)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 466666544
No 286
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.09 E-value=8.6e+02 Score=26.65 Aligned_cols=6 Identities=33% Similarity=0.518 Sum_probs=2.2
Q ss_pred HHHHHh
Q 026366 136 NALKNN 141 (239)
Q Consensus 136 ~~Lr~~ 141 (239)
..|+.+
T Consensus 774 ~~l~~~ 779 (1201)
T PF12128_consen 774 QQLKQE 779 (1201)
T ss_pred HHHHHH
Confidence 333333
No 287
>PRK04325 hypothetical protein; Provisional
Probab=26.94 E-value=2.5e+02 Score=20.29 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHH
Q 026366 100 IEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAV 146 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~ 146 (239)
|..+--+.+-.++-|..|..... ...-.+..|+..|+.+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~-------~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVA-------RQQQTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33333344444444444443333 22233455555555553
No 288
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=26.88 E-value=32 Score=32.23 Aligned_cols=29 Identities=28% Similarity=0.787 Sum_probs=25.6
Q ss_pred ccccccccccccceEEeCCC--CcccccchHh
Q 026366 189 QMICRACNIQEVSILLLPCR--HLCLCKDCEG 218 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~--Hlc~C~~C~~ 218 (239)
...|..|-+....|+.+||. |. .|..|..
T Consensus 221 ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr 251 (446)
T KOG0006|consen 221 NITCITCTDVRSPVLVFQCNSRHV-TCLDCFR 251 (446)
T ss_pred cceeEEecCCccceEEEecCCcee-ehHHhhh
Confidence 34899999999999999999 88 7888865
No 289
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=26.84 E-value=25 Score=23.50 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=13.4
Q ss_pred ccccccccccc-eEEeCCCCcccccchHhc--------CCCCCCCccc
Q 026366 191 ICRACNIQEVS-ILLLPCRHLCLCKDCEGL--------IGVCPVCKAM 229 (239)
Q Consensus 191 ~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~--------l~~CPvCr~~ 229 (239)
.|++.+.+-.. +=-.-|.|+ -|.+=..- .-.||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 45555544333 333458888 34333222 2579999864
No 290
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=26.83 E-value=4.7e+02 Score=23.53 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHHHHHHHHH------HHHHHhHHHH
Q 026366 49 GRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRR-LHGKEMEIEVMNCKNKELV------EKIKQVSMEV 121 (239)
Q Consensus 49 ~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~r-lreke~Eie~~~~~n~eLe------Erl~ql~~E~ 121 (239)
..-.--||.+.--.+++.-..+++.|+.|..++...++...... +-++..=+=...+.|+.|+ |++-.+..|.
T Consensus 113 k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~E~ 192 (247)
T KOG3976|consen 113 KKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVAKEV 192 (247)
T ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577777778888889999999999999988887653222 3333333333455555554 4555666677
Q ss_pred HhHHHHhhhhHHHHHH
Q 026366 122 QSWHYKAKYNESVVNA 137 (239)
Q Consensus 122 q~Wq~~A~~~Ea~~~~ 137 (239)
-.|-+.-.+.|++...
T Consensus 193 K~~lDy~v~~e~~~rr 208 (247)
T KOG3976|consen 193 KRRLDYWVETEASKRR 208 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655555555443
No 291
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=26.81 E-value=2e+02 Score=19.13 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~ 119 (239)
+.++..+...|..|...+..|..
T Consensus 31 e~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 31 EQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33555555566666655555543
No 292
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=26.73 E-value=35 Score=34.63 Aligned_cols=40 Identities=28% Similarity=0.704 Sum_probs=29.5
Q ss_pred ccccccccccccccceEEeCCCCccccc--chHhcC-----------CCCCCCccccc
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCK--DCEGLI-----------GVCPVCKAMRT 231 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~--~C~~~l-----------~~CPvCr~~i~ 231 (239)
+-...|.+++.+ +.+||++. .|+ .|.... ..||+|...+.
T Consensus 304 ~vSL~CPl~~~R----m~~P~r~~-~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 304 RVSLNCPLSKMR----MSLPARGH-TCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred eeEecCCcccce----eecCCccc-ccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 355689998876 55799987 677 776542 79999987653
No 293
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=26.47 E-value=2.1e+02 Score=23.20 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~ 119 (239)
+...++.+...++.|++.+..
T Consensus 43 ~y~aak~~~~~~e~ri~~L~~ 63 (151)
T TIGR01462 43 EYHAAKEEQGFNEGRIAELED 63 (151)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555553
No 294
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.47 E-value=3.8e+02 Score=22.36 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 103 MNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 103 ~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
++.+--+|+-+++++..=..--...+..-..+.+-|.++|.++
T Consensus 103 Lr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v 145 (159)
T PF05384_consen 103 LRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQV 145 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444445555555554322211222222223445566666665
No 295
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=26.43 E-value=2.2e+02 Score=22.98 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=34.3
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHH
Q 026366 91 RRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQ 144 (239)
Q Consensus 91 ~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq 144 (239)
+-|..|++.|+.++..|.-|+|-+-++.... ....-++..|+.+|+.
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~y-------~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYSMQELY-------EEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHh
Confidence 3477899999999999999999888775332 2333566777777654
No 296
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.41 E-value=4.2e+02 Score=22.75 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=30.8
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
+..+++..+.++..+.-.+..|+.++.++..|-..|..
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888899999999999988887764
No 297
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=26.31 E-value=37 Score=28.59 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=25.7
Q ss_pred cccccccccccccceEEeCCCCcccc----cchHh------cCCCCCCCccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLC----KDCEG------LIGVCPVCKAMRT 231 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C----~~C~~------~l~~CPvCr~~i~ 231 (239)
..+.|.||++.... ..-||+-...- .+|-. .-..||+|..+..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 35589999998753 34566422110 12322 2379999998764
No 298
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.29 E-value=2.1e+02 Score=20.99 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 63 EGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 63 ~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
+..+|..|+.+ |++|..++. +.+-+-+-+.+|+.+..++....+.+..+.
T Consensus 30 ~~~lk~Klq~a-----r~~i~~lpg-i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 30 TGSLKHKLQKA-----RAAIRELPG-IDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHH-----HHHHHhCCC-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554 455655553 455555556666666666666655555443
No 299
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=26.28 E-value=8.9e+02 Score=26.52 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=54.4
Q ss_pred HHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHH---H---HHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 026366 55 FDQYVR--IQEGNLIKGVREMKQRHTYSFLSAIE---K---EVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 55 id~~l~--~q~e~lr~~l~e~r~r~~r~Ll~~~e---~---~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
-|++++ +++-++-..|+|.+-+.+..++++.= + .+..+.+..+++|.++..++++|++.-+.+..|...-+.
T Consensus 371 s~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~ 450 (1195)
T KOG4643|consen 371 SDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE 450 (1195)
T ss_pred hHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456664 45556777888888888877777652 2 256677788889999999999999999999988865443
No 300
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.25 E-value=6.1e+02 Score=24.91 Aligned_cols=30 Identities=3% Similarity=-0.016 Sum_probs=22.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026366 58 YVRIQEGNLIKGVREMKQRHTYSFLSAIEK 87 (239)
Q Consensus 58 ~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~ 87 (239)
+|+.+.||||..|.-+.+.+...+....+.
T Consensus 257 ~l~~EveRlrt~l~~Aqk~~~ek~~qy~~E 286 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSRAQKSYQEKLMQYRAE 286 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888877777666655554
No 301
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=26.04 E-value=87 Score=17.90 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026366 99 EIEVMNCKNKELVEKIK 115 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ 115 (239)
|+++.+.++.+|+-++.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 67777788888776553
No 302
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=25.88 E-value=2.9e+02 Score=20.73 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=11.3
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 94 HGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 94 reke~Eie~~~~~n~eLeErl~ql~ 118 (239)
|+...+++.++.+-.++...+.++.
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4444444444444444444444443
No 303
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=25.65 E-value=9e+02 Score=26.36 Aligned_cols=16 Identities=44% Similarity=0.520 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026366 99 EIEVMNCKNKELVEKI 114 (239)
Q Consensus 99 Eie~~~~~n~eLeErl 114 (239)
+|+.+..+..++++.+
T Consensus 829 ei~~l~~~~~~~~~~~ 844 (1163)
T COG1196 829 EIEELEEEIEELEEKL 844 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 304
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.41 E-value=28 Score=26.04 Aligned_cols=10 Identities=40% Similarity=1.212 Sum_probs=7.5
Q ss_pred CCCCCCCccc
Q 026366 220 IGVCPVCKAM 229 (239)
Q Consensus 220 l~~CPvCr~~ 229 (239)
++.||-||..
T Consensus 21 iD~CPrCrGV 30 (88)
T COG3809 21 IDYCPRCRGV 30 (88)
T ss_pred eeeCCccccE
Confidence 3789999853
No 305
>PF12773 DZR: Double zinc ribbon
Probab=25.40 E-value=37 Score=22.05 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=7.1
Q ss_pred cccccccccccc
Q 026366 189 QMICRACNIQEV 200 (239)
Q Consensus 189 ~~~C~iC~~~~~ 200 (239)
...|..|.....
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 346666666555
No 306
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=25.40 E-value=3.7e+02 Score=21.75 Aligned_cols=19 Identities=11% Similarity=0.508 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026366 99 EIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql 117 (239)
+|+.+..++.+|..+|..+
T Consensus 110 dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 110 DVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4454555555544444444
No 307
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.27 E-value=1.5e+02 Score=21.37 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=37.4
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 88 EVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 88 ~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
.++++|--.+.+|+.+.-.+-.+.|+..++- ..|+.+-.. +|++..|...|..+
T Consensus 16 ~laR~LGls~~~I~~ie~~~~~~~eq~~~mL---~~W~~k~G~-~At~~~L~~aL~~~ 69 (79)
T cd08784 16 RFFRKLGLSDNEIKVAELDNPQHRDRVYELL---RIWRNKEGR-KATLNTLIKALKDL 69 (79)
T ss_pred HHHHHcCCCHHHHHHHHHcCCchHHHHHHHH---HHHHhccCc-CcHHHHHHHHHHHc
Confidence 4678888889999998877755555554443 589887655 57777766555544
No 308
>PRK14127 cell division protein GpsB; Provisional
Probab=25.12 E-value=1.9e+02 Score=22.70 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHh
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYKA 128 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A 128 (239)
+++.+.+.|.+|++++.++..+...|+...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666667777777777777777666666533
No 309
>PLN03188 kinesin-12 family protein; Provisional
Probab=25.11 E-value=8.1e+02 Score=27.37 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=27.8
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHh
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNN 141 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~ 141 (239)
+.=||||+|+-..-+.++.++.+.--..+..+.. .+-+.+|..+..|+..
T Consensus 1202 llvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~---klkrkh~~e~~t~~q~ 1251 (1320)
T PLN03188 1202 LLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQID---KLKRKHENEISTLNQL 1251 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4457888777666666666666554444443333 2234455555555443
No 310
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=25.08 E-value=38 Score=28.53 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=12.4
Q ss_pred CCCCCCcccccceEEE
Q 026366 221 GVCPVCKAMRTASVEV 236 (239)
Q Consensus 221 ~~CPvCr~~i~~~v~v 236 (239)
-.||+||..|.+.+.|
T Consensus 81 L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVV 96 (162)
T ss_pred ccCccccCceeceEEc
Confidence 5888888888877654
No 311
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=25.02 E-value=1.4e+02 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHh
Q 026366 100 IEVMNCKNKELVEKIKQVSMEVQS 123 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~E~q~ 123 (239)
|..+.+.|..|+++++.+.+|-|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888777663
No 312
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.99 E-value=2.8e+02 Score=20.31 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=24.8
Q ss_pred cchHHHHHHhhHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026366 40 LGDNLKLEIGRQKEEFDQY---VRIQEGNLIKGVREMKQRHTYSFLSAIEKEV 89 (239)
Q Consensus 40 ~~~~l~~~l~~q~~eid~~---l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~ 89 (239)
+-..|--||.+.+.+.-.+ ++...+-+-....+.-.++...||..+|...
T Consensus 18 vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~ 70 (79)
T PF06657_consen 18 VLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKA 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666654444 5443332222222333345566777777643
No 313
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.93 E-value=2.6e+02 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
+.+|..+..+..+|+..++.+..|-.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 314
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.79 E-value=34 Score=26.81 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=7.5
Q ss_pred CCCCCCcccccc
Q 026366 221 GVCPVCKAMRTA 232 (239)
Q Consensus 221 ~~CPvCr~~i~~ 232 (239)
..||.|...+.-
T Consensus 27 ivCP~CG~~~~~ 38 (108)
T PF09538_consen 27 IVCPKCGTEFPP 38 (108)
T ss_pred ccCCCCCCccCc
Confidence 357777765543
No 315
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=24.78 E-value=4.7e+02 Score=22.83 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=15.7
Q ss_pred ccchHHHHHHhhHH-HHHHH--HHHHHHHhHHHHHHH
Q 026366 39 SLGDNLKLEIGRQK-EEFDQ--YVRIQEGNLIKGVRE 72 (239)
Q Consensus 39 ~~~~~l~~~l~~q~-~eid~--~l~~q~e~lr~~l~e 72 (239)
.+..+|..+..+++ .|=++ .|+-...+|.+.|+.
T Consensus 16 ~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~ 52 (247)
T PF06705_consen 16 GFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEA 52 (247)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555533333 23333 344555555555543
No 316
>PLN02320 seryl-tRNA synthetase
Probab=24.75 E-value=7e+02 Score=24.79 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 026366 100 IEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~ 119 (239)
.+.+..+..+|.++++.+..
T Consensus 132 ~~~l~~~~k~lk~~i~~le~ 151 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEE 151 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555544443
No 317
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.72 E-value=2.7e+02 Score=24.84 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHH
Q 026366 100 IEVMNCKNKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~E~q~Wq 125 (239)
=+|-+.||.|||+.+++...+...-+
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~ 113 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLR 113 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665555443
No 318
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.66 E-value=4.3e+02 Score=26.09 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=16.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 026366 64 GNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNC 105 (239)
Q Consensus 64 e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~ 105 (239)
++|.+.|+..| +...++++..+....+|.+++.|+.++..
T Consensus 79 sELEKqLaaLr--qElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 79 AQMQKQYEEIR--RELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444444442 22233334444444444444444444433
No 319
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=24.54 E-value=9.4e+02 Score=26.23 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=9.0
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 026366 43 NLKLEIGRQKEEFDQYVRIQ 62 (239)
Q Consensus 43 ~l~~~l~~q~~eid~~l~~q 62 (239)
|+..+|.+|+.++.++..-|
T Consensus 880 d~~~~l~~qQe~~a~l~~sQ 899 (1283)
T KOG1916|consen 880 DLLPQLLAQQETMAQLMASQ 899 (1283)
T ss_pred hHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444433
No 320
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=24.53 E-value=2e+02 Score=23.95 Aligned_cols=34 Identities=9% Similarity=0.194 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHH-hHHHHhhhhHHHHHHHHHh
Q 026366 108 KELVEKIKQVSMEVQ-SWHYKAKYNESVVNALKNN 141 (239)
Q Consensus 108 ~eLeErl~ql~~E~q-~Wq~~A~~~Ea~~~~Lr~~ 141 (239)
=|+++.+..+....| .|+....+.+.++..|..+
T Consensus 84 Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~ 118 (155)
T PF07464_consen 84 PEVEKQANELQEKLQSAVQSLVQESQKLAKEVSEN 118 (155)
T ss_dssp HHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333 3555555555544444443
No 321
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=24.53 E-value=2.9e+02 Score=20.34 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
-.|++.++.+..+|+..-..+.... |..++.|+..|++.
T Consensus 38 i~Em~~ir~~v~eLE~~h~kmK~~Y----------EeEI~rLr~eLe~r 76 (79)
T PF08581_consen 38 IQEMQQIRQKVYELEQAHRKMKQQY----------EEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhh
Confidence 3477777777777776665555322 56788888888753
No 322
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=24.41 E-value=18 Score=36.90 Aligned_cols=43 Identities=26% Similarity=0.491 Sum_probs=34.7
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC-------CCCCCCccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-------GVCPVCKAMRT 231 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-------~~CPvCr~~i~ 231 (239)
....|.||......-+++-|-|- +|..|.... ..||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhh
Confidence 45589999998777788899999 899997643 68999986654
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.19 E-value=2.1e+02 Score=30.29 Aligned_cols=42 Identities=21% Similarity=0.506 Sum_probs=29.2
Q ss_pred cccccccc-ccceEEeCCCCcccccchHh-cCCCCCCCcccccce
Q 026366 191 ICRACNIQ-EVSILLLPCRHLCLCKDCEG-LIGVCPVCKAMRTAS 233 (239)
Q Consensus 191 ~C~iC~~~-~~~vlllPC~Hlc~C~~C~~-~l~~CPvCr~~i~~~ 233 (239)
.|..|... ..-+|..-|||. .=..|.. ....||-|+....+.
T Consensus 842 kCs~C~~~LdlP~VhF~CgHs-yHqhC~e~~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 842 KCSACEGTLDLPFVHFLCGHS-YHQHCLEDKEDKCPKCLPELRGV 885 (933)
T ss_pred eecccCCccccceeeeecccH-HHHHhhccCcccCCccchhhhhh
Confidence 78888653 444677789998 4455554 568999999854443
No 324
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.15 E-value=5.3e+02 Score=23.20 Aligned_cols=36 Identities=8% Similarity=0.181 Sum_probs=21.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026366 42 DNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRH 77 (239)
Q Consensus 42 ~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~ 77 (239)
.++...|+.....+...++...++.+..|....++-
T Consensus 146 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l 181 (319)
T PF02601_consen 146 RELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRL 181 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555555555554443
No 325
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.97 E-value=5.7e+02 Score=23.49 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=28.1
Q ss_pred HHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHH-HHHhHHHHh
Q 026366 84 AIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSM-EVQSWHYKA 128 (239)
Q Consensus 84 ~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~-E~q~Wq~~A 128 (239)
.-|+.....|.+.+.|-+.+.+...+|++....+.. |.+.|+...
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n 102 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYN 102 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666677777777777777777776654 335666543
No 326
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.77 E-value=5.3e+02 Score=23.05 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHH
Q 026366 59 VRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNAL 138 (239)
Q Consensus 59 l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~L 138 (239)
|+.|.-++-..|.+.|.|-.+.=..--.-.-.+.+++.+.|+..+.++...|+..+..+..+...-+.....-..-+..+
T Consensus 57 le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 57 LENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHh
Q 026366 139 KNNLKQAVAQ 148 (239)
Q Consensus 139 r~~Lqq~~~~ 148 (239)
..++-.....
T Consensus 137 e~~~~e~~~~ 146 (239)
T COG1579 137 EKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHH
No 327
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.69 E-value=3.6e+02 Score=26.29 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 026366 98 MEIEVMNCKNKELVEKIKQVSMEVQSW 124 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~E~q~W 124 (239)
+|-+.+..+..++|--|..|..|+..-
T Consensus 41 a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 41 AESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777777777543
No 328
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=23.67 E-value=3.6e+02 Score=27.74 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=43.3
Q ss_pred ccccccchHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH-------HH
Q 026366 35 PHILSLGDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNC-------KN 107 (239)
Q Consensus 35 ~~~~~~~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~-------~n 107 (239)
+.+.=|..+++-||-++- .-+.+.+.++||+++++|.+.|- ++.+. ..|+++|.+|..+.. ..
T Consensus 352 ~~~gkLdp~~aeeF~kRV-------~~~ia~~~AEIekmK~~Hak~m~-k~k~~--s~lk~AE~~LR~a~~~p~~~G~E~ 421 (669)
T PF08549_consen 352 PYVGKLDPGKAEEFRKRV-------AKKIADMNAEIEKMKARHAKRMA-KFKRN--SLLKDAEKELRDAVEDPSETGPEI 421 (669)
T ss_pred ccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HHhhc--cHHHHHHHHHHhccCCccccCccc
Confidence 333446666766665443 45667788888899999997764 44442 345555555544433 46
Q ss_pred HHHHHHHH
Q 026366 108 KELVEKIK 115 (239)
Q Consensus 108 ~eLeErl~ 115 (239)
|-||-|+.
T Consensus 422 WRlEGrl~ 429 (669)
T PF08549_consen 422 WRLEGRLD 429 (669)
T ss_pred eeeccccc
Confidence 66776666
No 329
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.65 E-value=1.7e+02 Score=26.19 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=21.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026366 43 NLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHT 78 (239)
Q Consensus 43 ~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~ 78 (239)
+|..+|+.-+.||+++ |=++|++...|++..+|+-
T Consensus 58 ~l~~ql~~lq~ev~~L-rG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 58 QLQQQLSDNQSDIDSL-RGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 4555566666666653 6666777777776655543
No 330
>PRK02224 chromosome segregation protein; Provisional
Probab=23.36 E-value=8.4e+02 Score=25.24 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=31.4
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNA 137 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~ 137 (239)
+..+...++....+..+|++.+..+..+...|...+..-++....
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 569 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334445667777778888888888888888888866655544433
No 331
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.31 E-value=34 Score=21.08 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=8.8
Q ss_pred CCCCCCCccccc
Q 026366 220 IGVCPVCKAMRT 231 (239)
Q Consensus 220 l~~CPvCr~~i~ 231 (239)
...||.|...+.
T Consensus 26 ~~~CP~Cg~~~~ 37 (41)
T smart00834 26 LATCPECGGDVR 37 (41)
T ss_pred CCCCCCCCCcce
Confidence 468999988544
No 332
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=39 Score=32.28 Aligned_cols=43 Identities=26% Similarity=0.502 Sum_probs=28.4
Q ss_pred cccccccccccccc---eEEeCCCCcccccchHhcC-------CCCCCCccccc
Q 026366 188 MQMICRACNIQEVS---ILLLPCRHLCLCKDCEGLI-------GVCPVCKAMRT 231 (239)
Q Consensus 188 ~~~~C~iC~~~~~~---vlllPC~Hlc~C~~C~~~l-------~~CPvCr~~i~ 231 (239)
....|+|=.+.... -+-|+|||. +|+.=..++ =+||.|.....
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 45689885553332 345689999 677766554 38999976543
No 333
>PRK11519 tyrosine kinase; Provisional
Probab=23.05 E-value=8.2e+02 Score=25.02 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=10.4
Q ss_pred HHHHHHHhHHHHHHHH
Q 026366 58 YVRIQEGNLIKGVREM 73 (239)
Q Consensus 58 ~l~~q~e~lr~~l~e~ 73 (239)
||..|.++++..|++.
T Consensus 271 fL~~ql~~l~~~L~~a 286 (719)
T PRK11519 271 FLAQQLPEVRSRLDVA 286 (719)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666655
No 334
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=23.02 E-value=2.2e+02 Score=25.64 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=8.9
Q ss_pred HHHHHHHHHhHHHHHhHH
Q 026366 108 KELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 108 ~eLeErl~ql~~E~q~Wq 125 (239)
.+...|+..|..|+++.+
T Consensus 218 ~e~~~r~~~leken~~lr 235 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALR 235 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555443
No 335
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.61 E-value=43 Score=22.32 Aligned_cols=12 Identities=17% Similarity=0.584 Sum_probs=4.6
Q ss_pred cccccccccccc
Q 026366 187 KMQMICRACNIQ 198 (239)
Q Consensus 187 ~~~~~C~iC~~~ 198 (239)
.+...|.+|...
T Consensus 32 p~~w~CP~C~a~ 43 (47)
T PF00301_consen 32 PDDWVCPVCGAP 43 (47)
T ss_dssp -TT-B-TTTSSB
T ss_pred CCCCcCcCCCCc
Confidence 344566666543
No 336
>PF03172 Sp100: Sp100 domain; InterPro: IPR004865 The Sp100 and promyelocytic leukemia proteins (PML) are constituents of nuclear domains, known as nuclear dots (NDs or NBs - nuclear bodies or PML bodies), and are both covalently modified by the small ubiquitin-related protein SUMO-1. NBs play a role in autoimmunity, virus infections, and in the etiology of acute promyelocytic leukemia []. A functional nuclear localization signal and an NB-targeting region that coincides with an Sp100 homodimerization domain have been mapped. Sequences similar to the Sp100 homodimerization/ND-targeting region occur in several other proteins, which include the autoimmune regulator proteins (AIRE) and other numerous other transiently or permanently localised proteins. PML is expressed as a family of isoforms (PML I-VII) as a result of alternative splicing, most of which are found in the nucleus. Although there are many other functions of PML NBs in a wide range of cellular pathways, there is accumulating evidence that they represent preferential targets for viral infections and that PML plays a role in the mechanism of the antiviral action of interferon []. The Sp100 domain is usually found at the amino terminus of proteins that contain a SAND domain IPR000770 from INTERPRO. ; GO: 0005634 nucleus
Probab=22.38 E-value=3.8e+02 Score=20.91 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=36.6
Q ss_pred chHHHHHHhhHHHHHHHHH-------------HHHHHhHHHHHHHH------HHHHHHHHHHHHHHHH
Q 026366 41 GDNLKLEIGRQKEEFDQYV-------------RIQEGNLIKGVREM------KQRHTYSFLSAIEKEV 89 (239)
Q Consensus 41 ~~~l~~~l~~q~~eid~~l-------------~~q~e~lr~~l~e~------r~r~~r~Ll~~~e~~~ 89 (239)
.+.+..++..++.||.-.| .+..|+|-+..+|+ .+|-.-.+|+-+|+..
T Consensus 3 ~e~~~~~fk~~KvEIa~AI~kpFPfl~gLrD~~~ItE~~y~e~~e~crnlvpv~rvvY~vLs~Lek~f 70 (103)
T PF03172_consen 3 EEALFRHFKENKVEIAYAITKPFPFLEGLRDHSFITEQMYKESQEACRNLVPVQRVVYNVLSWLEKTF 70 (103)
T ss_pred HHHHHHHHHHhHHHHHHHHcccchHHHHhhhcccccHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 4667788999999999655 25578888888888 6667777777777653
No 337
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.27 E-value=4.3e+02 Score=21.50 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 96 KEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 96 ke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
++..|..+.....+-+....+|..+...-...+...|..+..|+...+.+
T Consensus 45 ~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 45 KANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 34444444444433344444444444444455555555555555554443
No 338
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=22.27 E-value=4e+02 Score=22.76 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 026366 101 EVMNCKNKELVEKIKQVSME 120 (239)
Q Consensus 101 e~~~~~n~eLeErl~ql~~E 120 (239)
+.+.++..+|++.+....+|
T Consensus 156 ~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 156 EELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33444555666666555443
No 339
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.25 E-value=3.8e+02 Score=23.24 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHH-HHHHHHHHHHHHHHHhH
Q 026366 63 EGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIE-VMNCKNKELVEKIKQVS 118 (239)
Q Consensus 63 ~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie-~~~~~n~eLeErl~ql~ 118 (239)
.+.|-..|+..+|++.+ |...+|. .++.++..+|.. .+.++..-|.+.++.+.
T Consensus 83 ~qeLe~~L~~~~qk~~t-l~e~~en--~K~~~e~tEer~~el~kklnslkk~~e~lr 136 (203)
T KOG3433|consen 83 LQELESQLATGSQKKAT-LGESIEN--RKAGREETEERTDELTKKLNSLKKILESLR 136 (203)
T ss_pred HHHHHHHHHHhhhhHhH-HHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554432 2223333 244555555544 45555445544444443
No 340
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.20 E-value=7.4e+02 Score=24.14 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 100 IEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
++.+.....-+.+++..+..+.......-...+..+..|+..|..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444333333444444555555444
No 341
>PRK01343 zinc-binding protein; Provisional
Probab=22.18 E-value=41 Score=23.48 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=4.0
Q ss_pred CCCCCcccc
Q 026366 222 VCPVCKAMR 230 (239)
Q Consensus 222 ~CPvCr~~i 230 (239)
.||+|+.++
T Consensus 11 ~CP~C~k~~ 19 (57)
T PRK01343 11 PCPECGKPS 19 (57)
T ss_pred cCCCCCCcC
Confidence 444444443
No 342
>PHA01750 hypothetical protein
Probab=22.13 E-value=2.8e+02 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 026366 55 FDQYVRIQEGNLIKGVREMKQR 76 (239)
Q Consensus 55 id~~l~~q~e~lr~~l~e~r~r 76 (239)
|.-+++.+.+.||+.+++-+.+
T Consensus 36 vkeIV~~ELdNL~~ei~~~kik 57 (75)
T PHA01750 36 VKEIVNSELDNLKTEIEELKIK 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555433
No 343
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=22.07 E-value=1e+02 Score=28.19 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHh
Q 026366 104 NCKNKELVEKIKQVSMEVQSWHYKA 128 (239)
Q Consensus 104 ~~~n~eLeErl~ql~~E~q~Wq~~A 128 (239)
....++|+|+|+++..|.++|....
T Consensus 163 ~~~i~~Lee~I~rLk~E~~~W~~~l 187 (301)
T PF08202_consen 163 EENIAELEEKIKRLKEERQAWAQLL 187 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3457899999999999999998765
No 344
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=22.06 E-value=2e+02 Score=29.55 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 83 SAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 83 ~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
.-..+.|.+++.+-.+|||+++++.+..-+++++.+.
T Consensus 363 eeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~ 399 (669)
T PF08549_consen 363 EEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSL 399 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 3344557777778888999998887776666665553
No 345
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.03 E-value=1.1e+03 Score=26.18 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=30.5
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHH
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLK 143 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lq 143 (239)
..+++-+....+..+...+.+....+..+..+-..|......-+..+..|+.+..
T Consensus 519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444555555555555556666666667777766666655555544433
No 346
>PRK14140 heat shock protein GrpE; Provisional
Probab=21.80 E-value=2.4e+02 Score=24.26 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 026366 54 EFDQYVRIQEGNLIKGVREMK 74 (239)
Q Consensus 54 eid~~l~~q~e~lr~~l~e~r 74 (239)
+|+. +....+.++..+.+.+
T Consensus 38 ~~~~-l~~~i~~l~~ei~elk 57 (191)
T PRK14140 38 LLDE-EQAKIAELEAKLDELE 57 (191)
T ss_pred HHHH-HHHHHHHHHHHHHHHH
Confidence 3444 3444445555555443
No 347
>PF12675 DUF3795: Protein of unknown function (DUF3795); InterPro: IPR024227 This family of proteins is functionally uncharacterised and is found in bacteria and archaea. Proteins in this family are typically between 99 and 171 amino acids in length. These proteins are likely to be zinc binding given the conserved cysteines.
Probab=21.70 E-value=49 Score=24.01 Aligned_cols=25 Identities=28% Similarity=0.804 Sum_probs=17.7
Q ss_pred EeCCCCcccccchHhcCC------------------CCCCCcccc
Q 026366 204 LLPCRHLCLCKDCEGLIG------------------VCPVCKAMR 230 (239)
Q Consensus 204 llPC~Hlc~C~~C~~~l~------------------~CPvCr~~i 230 (239)
+-|||.. |..|..... .||.||..-
T Consensus 2 iApCGl~--C~~C~~y~~~~~~~~~~~~~~~~~~~~~C~GCr~~~ 44 (78)
T PF12675_consen 2 IAPCGLD--CGNCPAYEAGKISDASLRLKEASPEKIRCPGCRSGG 44 (78)
T ss_pred ccccCCc--cccchhhhcCCccHHHHHHhhccCCCCcCcCCcCCC
Confidence 4589887 678876542 299998764
No 348
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.64 E-value=7e+02 Score=23.69 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 026366 54 EFDQYVRIQEGNLIKGVREMKQRHT 78 (239)
Q Consensus 54 eid~~l~~q~e~lr~~l~e~r~r~~ 78 (239)
.+++-.+...+++.+.++.-++++-
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~E 242 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEE 242 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3555555666666666666555543
No 349
>PHA03248 DNA packaging tegument protein UL25; Provisional
Probab=21.63 E-value=2.9e+02 Score=27.94 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhcchHHHHHHHHHHHHHHHH
Q 026366 66 LIKGVREMKQRHTYSFLSAIEKE-------VGRRLHGKEMEIEVMNCKNKELVEK 113 (239)
Q Consensus 66 lr~~l~e~r~r~~r~Ll~~~e~~-------~~~rlreke~Eie~~~~~n~eLeEr 113 (239)
.|..+-++|++-..+-|..++.+ +.+|||-.|..++++..-...||+.
T Consensus 53 ~~~~~~~~r~~Aa~AAld~l~~~~~~~~~~v~~rl~p~e~~~~~v~~~l~~le~a 107 (583)
T PHA03248 53 ARLALLEARNRAAAAALDNLAGQAATIPVEVDRRLRPIERQLEEVADALADLEEA 107 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 44455566776666666555544 4555666555555555555544443
No 350
>PRK00295 hypothetical protein; Provisional
Probab=21.63 E-value=3e+02 Score=19.47 Aligned_cols=40 Identities=8% Similarity=0.154 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHH
Q 026366 100 IEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAV 146 (239)
Q Consensus 100 ie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~ 146 (239)
|..+--+.+-.++-|..|......-+ ..+..|+..|+.+.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq-------~~I~~L~~ql~~L~ 46 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQ-------RVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 44444455555555555554443222 23445555555443
No 351
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.39 E-value=3e+02 Score=19.33 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=22.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 026366 95 GKEMEIEVMNCKNKELVEKIKQVSMEVQSW 124 (239)
Q Consensus 95 eke~Eie~~~~~n~eLeErl~ql~~E~q~W 124 (239)
++...|..+.....+.++-|.++..|.+.-
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455567777777888888899999888744
No 352
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=21.38 E-value=3.3e+02 Score=26.66 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHH
Q 026366 107 NKELVEKIKQVSMEVQSWHYKAKYNESVVNALK 139 (239)
Q Consensus 107 n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr 139 (239)
.-|||--|+=..+|+..||.+|-+.--.|.+|+
T Consensus 352 ~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~Lq 384 (446)
T PF07227_consen 352 IEELESIVRIKQAEAKMFQLKADEARREAEGLQ 384 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666677765544444555543
No 353
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.37 E-value=56 Score=22.98 Aligned_cols=16 Identities=31% Similarity=0.789 Sum_probs=11.5
Q ss_pred CCCCCCcccccceEEE
Q 026366 221 GVCPVCKAMRTASVEV 236 (239)
Q Consensus 221 ~~CPvCr~~i~~~v~v 236 (239)
..||+|.++.....+.
T Consensus 40 p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 40 PVCPLCKSPMVSGTRM 55 (59)
T ss_pred ccCCCcCCccccceee
Confidence 6888888877766553
No 354
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=21.35 E-value=5.8e+02 Score=22.58 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNES 133 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea 133 (239)
++..+...+..|++-......|+..|+..+.....
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666677777788888876555443
No 355
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=21.24 E-value=8.4e+02 Score=24.44 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=8.7
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 026366 60 RIQEGNLIKGVREMKQRH 77 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~ 77 (239)
..+.+||++.+++-.+.+
T Consensus 27 e~ef~rl~k~fed~~ek~ 44 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKW 44 (604)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555544433
No 356
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.15 E-value=4.9e+02 Score=28.34 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 102 VMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 102 ~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
+++...-.|+..+..+..|.+.|...|......+..|.+--+++
T Consensus 202 ~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~a 245 (1195)
T KOG4643|consen 202 RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQA 245 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Confidence 33344445556666677777777777766665555554444443
No 357
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.14 E-value=6.8e+02 Score=23.33 Aligned_cols=8 Identities=50% Similarity=0.725 Sum_probs=3.3
Q ss_pred HHHhHHHH
Q 026366 138 LKNNLKQA 145 (239)
Q Consensus 138 Lr~~Lqq~ 145 (239)
|-+.|++.
T Consensus 168 lEn~LE~E 175 (310)
T PF09755_consen 168 LENTLEQE 175 (310)
T ss_pred HHHHHHHH
Confidence 34444443
No 358
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=21.08 E-value=52 Score=30.90 Aligned_cols=38 Identities=29% Similarity=0.762 Sum_probs=26.3
Q ss_pred cccccccccccc---eEEeCCCCcccccchHhc----CCCCCCCcc
Q 026366 190 MICRACNIQEVS---ILLLPCRHLCLCKDCEGL----IGVCPVCKA 228 (239)
Q Consensus 190 ~~C~iC~~~~~~---vlllPC~Hlc~C~~C~~~----l~~CPvCr~ 228 (239)
..|..|.+...+ +.---|.|. ||-+|... +..||.|..
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNV-FCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred cceeeeccccCCCCcEEchhccce-eeccchHHHHhhhhcCCCcCC
Confidence 459999554443 333456676 89999875 489999973
No 359
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.99 E-value=48 Score=32.55 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=11.2
Q ss_pred cccchHhcC---CCCCCCccc
Q 026366 212 LCKDCEGLI---GVCPVCKAM 229 (239)
Q Consensus 212 ~C~~C~~~l---~~CPvCr~~ 229 (239)
.|..|.... ..||.|...
T Consensus 242 ~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 242 RCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred EcCCCcCcCCCCCCCCCCCCC
Confidence 355554432 689999765
No 360
>PRK12496 hypothetical protein; Provisional
Probab=20.97 E-value=42 Score=28.01 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=8.0
Q ss_pred CCCCCCccccc
Q 026366 221 GVCPVCKAMRT 231 (239)
Q Consensus 221 ~~CPvCr~~i~ 231 (239)
..||+|..++.
T Consensus 144 ~~C~~CG~~~~ 154 (164)
T PRK12496 144 DVCEICGSPVK 154 (164)
T ss_pred CcCCCCCChhh
Confidence 45899887754
No 361
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=20.95 E-value=2.6e+02 Score=28.22 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=31.2
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 026366 88 EVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQS 123 (239)
Q Consensus 88 ~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~ 123 (239)
++..||.+...|-+.+++.|+.|..||.-+..|++.
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~ 341 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVSENQR 341 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcc
Confidence 345678888889999999999999999999999974
No 362
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.83 E-value=7.7e+02 Score=23.82 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=15.8
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSW 124 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql~~E~q~W 124 (239)
.+.+.+.+++.+..+...|+..+.++..+...+
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555554444433
No 363
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=20.71 E-value=31 Score=22.34 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=8.1
Q ss_pred CCCCCCccccc
Q 026366 221 GVCPVCKAMRT 231 (239)
Q Consensus 221 ~~CPvCr~~i~ 231 (239)
..||.|..++.
T Consensus 22 ~~Cp~CG~~~~ 32 (46)
T PRK00398 22 VRCPYCGYRIL 32 (46)
T ss_pred eECCCCCCeEE
Confidence 57888887654
No 364
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=8.5e+02 Score=25.08 Aligned_cols=48 Identities=17% Similarity=-0.101 Sum_probs=30.1
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHH
Q 026366 91 RRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNAL 138 (239)
Q Consensus 91 ~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~L 138 (239)
-||+-.+.+-.+...-+.++.+.|+-|..|...-..++..-.+.+..+
T Consensus 480 ~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~ 527 (852)
T KOG4787|consen 480 ERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGK 527 (852)
T ss_pred HHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555666666677788888888888887765555544443333333
No 365
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=20.53 E-value=3.6e+02 Score=24.29 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=27.2
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 90 GRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 90 ~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
.-++|+.+.||.++.+.-.-|+-+|+.|....+
T Consensus 70 E~~IRdLNDeINkL~rEK~~WE~rI~~LGG~dy 102 (255)
T PF06246_consen 70 EFQIRDLNDEINKLIREKRHWERRIKELGGPDY 102 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 357899999999999999999999998876554
No 366
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=20.44 E-value=49 Score=22.88 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=12.2
Q ss_pred CCCCCCcccccceEEE
Q 026366 221 GVCPVCKAMRTASVEV 236 (239)
Q Consensus 221 ~~CPvCr~~i~~~v~v 236 (239)
..|.+|..+|.....|
T Consensus 2 ~~CvVCKqpi~~a~~v 17 (54)
T PF10886_consen 2 EICVVCKQPIDDALVV 17 (54)
T ss_pred CeeeeeCCccCcceEE
Confidence 5799999999886443
No 367
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=20.44 E-value=44 Score=23.82 Aligned_cols=18 Identities=44% Similarity=1.230 Sum_probs=12.0
Q ss_pred cccchHhcC----CCCCCCccc
Q 026366 212 LCKDCEGLI----GVCPVCKAM 229 (239)
Q Consensus 212 ~C~~C~~~l----~~CPvCr~~ 229 (239)
.|..|-..+ ..||+|..+
T Consensus 6 AC~~Ck~l~~~d~e~CP~Cgs~ 27 (64)
T COG2093 6 ACKNCKRLTPEDTEICPVCGST 27 (64)
T ss_pred HHhhccccCCCCCccCCCCCCc
Confidence 366664433 459999887
No 368
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=20.42 E-value=44 Score=31.35 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=29.4
Q ss_pred cccccccccccccceEEeCCCCcccccchHhc----CCCCCCCcccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGL----IGVCPVCKAMR 230 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i 230 (239)
+...|.+|.....+-..+-=--+++|..|.-. -..|||-..|.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 55699999988777333233335599999864 38999965443
No 369
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.31 E-value=4.9e+02 Score=21.41 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 026366 99 EIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~ 118 (239)
+++.+.....++.+.++.+.
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 370
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.31 E-value=9.4e+02 Score=24.64 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=10.2
Q ss_pred HHHHHHHhHHHHHHHH
Q 026366 58 YVRIQEGNLIKGVREM 73 (239)
Q Consensus 58 ~l~~q~e~lr~~l~e~ 73 (239)
||..|.++++..|+++
T Consensus 271 fL~~qL~~l~~~L~~a 286 (726)
T PRK09841 271 FLQRQLPEVRSELDQA 286 (726)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666554
No 371
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.24 E-value=2e+02 Score=20.00 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=17.1
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHh
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql 117 (239)
+.+.+.+++.+..+|.+|++.+..+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444557777777777777777777
No 372
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=20.07 E-value=38 Score=32.18 Aligned_cols=25 Identities=28% Similarity=0.662 Sum_probs=18.2
Q ss_pred CcccccchHhcC---------CCCCCCcccccceE
Q 026366 209 HLCLCKDCEGLI---------GVCPVCKAMRTASV 234 (239)
Q Consensus 209 Hlc~C~~C~~~l---------~~CPvCr~~i~~~v 234 (239)
|+-.|..|...+ ..|| |..+++.-|
T Consensus 239 h~~~c~~C~~~~~~~~~~~~~~~Cp-CG~~i~~GV 272 (374)
T TIGR00375 239 HQTACEACGEPAVSEDAETACANCP-CGGRIKKGV 272 (374)
T ss_pred chhhhcccCCcCCchhhhhcCCCCC-CCCcceech
Confidence 777788886543 5799 999876544
No 373
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=20.07 E-value=2.3e+02 Score=23.56 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=4.8
Q ss_pred hhHHHHHHHH
Q 026366 49 GRQKEEFDQY 58 (239)
Q Consensus 49 ~~q~~eid~~ 58 (239)
++=+.|++++
T Consensus 37 ~~L~~El~~L 46 (160)
T PRK06342 37 KALEDQLAQA 46 (160)
T ss_pred HHHHHHHHHH
Confidence 4444455554
Done!