Query 026366
Match_columns 239
No_of_seqs 267 out of 1135
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:55:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.5 1.7E-14 5.8E-19 102.8 4.6 52 188-239 14-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.4 1.8E-14 6.2E-19 101.0 2.3 51 189-239 7-63 (63)
3 2yho_A E3 ubiquitin-protein li 99.4 4.7E-14 1.6E-18 103.3 3.2 52 188-239 17-68 (79)
4 4ic3_A E3 ubiquitin-protein li 99.4 5.4E-14 1.8E-18 101.4 3.2 52 188-239 23-74 (74)
5 2vje_A E3 ubiquitin-protein li 99.4 3.7E-14 1.3E-18 99.7 1.4 52 188-239 7-64 (64)
6 2ecg_A Baculoviral IAP repeat- 99.4 6.1E-14 2.1E-18 101.1 0.8 52 188-239 24-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.1 1.4E-11 4.9E-16 113.0 3.2 53 187-239 293-345 (345)
8 4ayc_A E3 ubiquitin-protein li 98.7 7.1E-08 2.4E-12 76.7 10.1 43 191-234 55-101 (138)
9 2d8t_A Dactylidin, ring finger 98.6 4E-08 1.4E-12 69.3 3.9 44 188-232 14-61 (71)
10 2ecn_A Ring finger protein 141 98.5 1.3E-08 4.4E-13 71.4 0.9 49 187-237 13-65 (70)
11 1chc_A Equine herpes virus-1 r 98.5 2.5E-08 8.5E-13 69.4 2.3 48 189-237 5-57 (68)
12 2csy_A Zinc finger protein 183 98.5 6.2E-08 2.1E-12 69.9 3.8 46 188-234 14-63 (81)
13 2ysl_A Tripartite motif-contai 98.5 6.2E-08 2.1E-12 68.2 3.5 46 186-232 17-69 (73)
14 2egp_A Tripartite motif-contai 98.5 7.8E-08 2.7E-12 68.6 3.3 46 186-232 9-65 (79)
15 2ea6_A Ring finger protein 4; 98.4 7.6E-08 2.6E-12 66.7 2.5 44 188-232 14-68 (69)
16 2xeu_A Ring finger protein 4; 98.4 5.7E-08 2E-12 66.3 1.7 48 190-238 4-64 (64)
17 2ct2_A Tripartite motif protei 98.4 1.3E-07 4.3E-12 68.7 3.4 46 186-232 12-68 (88)
18 2ecm_A Ring finger and CHY zin 98.4 1.4E-07 4.7E-12 62.8 3.0 43 189-232 5-55 (55)
19 2djb_A Polycomb group ring fin 98.4 2.2E-07 7.4E-12 65.6 3.8 47 186-233 12-63 (72)
20 2ecw_A Tripartite motif-contai 98.4 2.4E-07 8.3E-12 66.4 4.0 46 186-232 16-71 (85)
21 3ng2_A RNF4, snurf, ring finge 98.4 6.1E-08 2.1E-12 67.8 0.7 44 188-232 9-63 (71)
22 2ecv_A Tripartite motif-contai 98.4 2.5E-07 8.5E-12 66.4 3.9 46 186-232 16-71 (85)
23 2ect_A Ring finger protein 126 98.3 2.9E-07 9.8E-12 65.7 3.7 44 188-232 14-64 (78)
24 2kiz_A E3 ubiquitin-protein li 98.3 2.6E-07 8.9E-12 64.4 3.3 45 189-234 14-65 (69)
25 1bor_A Transcription factor PM 98.3 1.7E-07 5.8E-12 63.4 2.2 44 188-232 5-49 (56)
26 1iym_A EL5; ring-H2 finger, ub 98.3 3.1E-07 1.1E-11 61.1 3.3 43 188-231 4-54 (55)
27 2yur_A Retinoblastoma-binding 98.3 5E-07 1.7E-11 64.2 4.1 46 185-231 11-63 (74)
28 2ecy_A TNF receptor-associated 98.3 2.8E-07 9.5E-12 63.9 2.2 45 187-232 13-62 (66)
29 2ep4_A Ring finger protein 24; 98.3 3.5E-07 1.2E-11 64.6 2.6 47 188-235 14-67 (74)
30 1e4u_A Transcriptional repress 98.2 2.2E-07 7.6E-12 67.5 1.3 47 187-234 9-64 (78)
31 2y1n_A E3 ubiquitin-protein li 98.2 4.3E-07 1.5E-11 84.3 3.5 48 190-238 333-385 (389)
32 2l0b_A E3 ubiquitin-protein li 98.2 4.4E-07 1.5E-11 67.2 2.6 44 188-232 39-89 (91)
33 3ztg_A E3 ubiquitin-protein li 98.2 5.7E-07 1.9E-11 66.1 3.0 44 186-230 10-60 (92)
34 1x4j_A Ring finger protein 38; 98.2 5.7E-07 1.9E-11 63.8 2.5 44 188-232 22-72 (75)
35 1g25_A CDK-activating kinase a 98.2 4.5E-07 1.6E-11 62.6 1.5 42 190-232 4-55 (65)
36 3fl2_A E3 ubiquitin-protein li 98.2 4.5E-07 1.5E-11 70.5 1.5 44 188-232 51-99 (124)
37 3l11_A E3 ubiquitin-protein li 98.2 8.5E-07 2.9E-11 68.0 2.9 45 187-232 13-62 (115)
38 2ecj_A Tripartite motif-contai 98.2 9.7E-07 3.3E-11 59.1 2.8 39 187-226 13-58 (58)
39 1jm7_A BRCA1, breast cancer ty 98.1 6.4E-07 2.2E-11 67.9 1.3 44 188-232 20-70 (112)
40 1t1h_A Gspef-atpub14, armadill 98.1 1.3E-06 4.6E-11 62.1 2.6 45 187-232 6-55 (78)
41 3lrq_A E3 ubiquitin-protein li 98.1 8.1E-07 2.8E-11 66.9 1.1 44 188-232 21-70 (100)
42 2y43_A E3 ubiquitin-protein li 98.1 9.8E-07 3.4E-11 65.9 1.4 44 188-232 21-69 (99)
43 2ysj_A Tripartite motif-contai 98.1 1.8E-06 6.2E-11 59.0 2.7 40 186-226 17-63 (63)
44 2ckl_A Polycomb group ring fin 98.0 1.6E-06 5.5E-11 65.8 2.3 44 188-232 14-62 (108)
45 1z6u_A NP95-like ring finger p 98.0 1.1E-06 3.9E-11 71.1 1.4 44 189-233 78-126 (150)
46 2ckl_B Ubiquitin ligase protei 98.0 1.5E-06 5E-11 70.8 2.0 45 186-231 51-101 (165)
47 3hct_A TNF receptor-associated 98.0 2.7E-06 9.2E-11 65.7 2.8 46 186-232 15-65 (118)
48 1jm7_B BARD1, BRCA1-associated 98.0 1.9E-06 6.4E-11 66.5 1.9 43 188-231 21-66 (117)
49 2f42_A STIP1 homology and U-bo 97.9 3.2E-05 1.1E-09 64.6 7.3 44 188-232 105-153 (179)
50 1rmd_A RAG1; V(D)J recombinati 97.8 3.8E-06 1.3E-10 64.4 1.4 44 188-232 22-70 (116)
51 1v87_A Deltex protein 2; ring- 97.8 5.8E-06 2E-10 63.0 1.2 41 191-232 27-94 (114)
52 4ap4_A E3 ubiquitin ligase RNF 97.7 7.5E-06 2.6E-10 63.1 1.3 43 189-232 7-60 (133)
53 4ap4_A E3 ubiquitin ligase RNF 97.7 1.2E-05 4.2E-10 61.9 2.1 50 188-238 71-133 (133)
54 2ecl_A Ring-box protein 2; RNF 97.6 1.9E-05 6.6E-10 57.1 2.0 30 202-232 43-76 (81)
55 3hcs_A TNF receptor-associated 97.6 3E-05 1E-09 63.2 2.9 46 186-232 15-65 (170)
56 3knv_A TNF receptor-associated 97.5 9.2E-06 3.2E-10 65.1 -0.8 44 186-230 28-76 (141)
57 2kr4_A Ubiquitin conjugation f 97.4 0.0001 3.4E-09 53.9 3.3 45 187-232 12-60 (85)
58 2c2l_A CHIP, carboxy terminus 97.4 9.4E-05 3.2E-09 63.8 3.5 44 188-232 207-255 (281)
59 2kre_A Ubiquitin conjugation f 97.4 9.7E-05 3.3E-09 55.8 3.0 46 186-232 26-75 (100)
60 1wgm_A Ubiquitin conjugation f 97.3 0.00015 5.1E-09 54.5 3.4 45 187-232 20-69 (98)
61 3dpl_R Ring-box protein 1; ubi 97.2 0.00015 5E-09 55.5 2.3 28 202-230 68-99 (106)
62 4a0k_B E3 ubiquitin-protein li 96.8 0.00018 6.2E-09 56.1 0.0 39 191-230 50-110 (117)
63 2yu4_A E3 SUMO-protein ligase 96.6 0.00089 3E-08 49.5 2.6 41 188-229 6-59 (94)
64 2d8s_A Cellular modulator of i 96.6 0.0013 4.5E-08 47.6 3.4 43 189-232 15-70 (80)
65 3vk6_A E3 ubiquitin-protein li 96.5 0.0021 7.1E-08 48.8 3.6 44 191-235 3-52 (101)
66 1wim_A KIAA0161 protein; ring 96.4 0.00068 2.3E-08 49.9 0.5 40 189-229 5-61 (94)
67 3htk_C E3 SUMO-protein ligase 95.4 0.0047 1.6E-07 54.4 1.7 46 186-232 178-232 (267)
68 2v71_A Nuclear distribution pr 94.9 0.74 2.5E-05 38.5 13.4 95 34-145 2-100 (189)
69 1vyx_A ORF K3, K3RING; zinc-bi 92.1 0.064 2.2E-06 36.4 1.9 43 189-231 6-58 (60)
70 2bay_A PRE-mRNA splicing facto 91.9 0.067 2.3E-06 36.4 1.8 42 190-232 4-50 (61)
71 2v71_A Nuclear distribution pr 91.5 5.4 0.00019 33.2 14.9 57 93-149 90-146 (189)
72 2oqq_A Transcription factor HY 90.9 0.43 1.5E-05 30.2 4.6 29 99-127 11-39 (42)
73 2v66_B Nuclear distribution pr 90.1 5.1 0.00017 30.6 12.1 78 60-149 16-93 (111)
74 1wlq_A Geminin; coiled-coil; 2 90.1 0.8 2.7E-05 33.3 6.1 52 62-116 17-70 (83)
75 2zxx_A Geminin; coiled-coil, c 90.0 1.1 3.8E-05 32.3 6.8 52 63-117 14-67 (79)
76 1uii_A Geminin; human, DNA rep 89.1 1.7 5.8E-05 31.6 7.2 52 61-115 24-77 (83)
77 3iv1_A Tumor susceptibility ge 88.5 3.3 0.00011 29.7 8.4 37 80-116 3-43 (78)
78 3oja_B Anopheles plasmodium-re 87.5 14 0.00047 34.7 14.6 63 82-144 507-569 (597)
79 3mq9_A Bone marrow stromal ant 87.2 3.7 0.00013 37.7 10.3 23 55-77 398-420 (471)
80 2wvr_A Geminin; DNA replicatio 85.9 4.7 0.00016 33.9 9.1 61 61-136 93-153 (209)
81 4etp_A Kinesin-like protein KA 83.7 2.4 8.1E-05 39.1 7.1 58 91-148 3-60 (403)
82 3ghg_A Fibrinogen alpha chain; 80.9 20 0.00067 34.3 12.1 99 41-145 48-150 (562)
83 2ko5_A Ring finger protein Z; 80.8 0.52 1.8E-05 35.2 1.2 47 187-236 26-77 (99)
84 1a93_B MAX protein, coiled coi 80.4 1.7 5.9E-05 26.3 3.2 22 97-118 13-34 (34)
85 2jee_A YIIU; FTSZ, septum, coi 79.9 8.9 0.00031 27.6 7.4 23 104-126 47-69 (81)
86 3oja_B Anopheles plasmodium-re 78.9 26 0.00089 32.7 12.7 11 136-146 568-578 (597)
87 1ci6_A Transcription factor AT 78.7 3.5 0.00012 28.0 4.8 32 96-127 28-59 (63)
88 3vem_A Helicase protein MOM1; 78.3 20 0.0007 27.3 9.8 29 37-65 30-58 (115)
89 3k1l_B Fancl; UBC, ring, RWD, 76.8 0.42 1.4E-05 43.8 -0.6 46 189-235 308-376 (381)
90 2l5g_B Putative uncharacterize 76.0 8 0.00027 24.4 5.4 26 96-121 14-39 (42)
91 1dip_A Delta-sleep-inducing pe 74.1 2.3 7.8E-05 30.2 2.8 30 99-128 16-45 (78)
92 1wle_A Seryl-tRNA synthetase; 74.0 35 0.0012 32.3 11.9 75 41-120 50-138 (501)
93 1t6f_A Geminin; coiled-coil, c 73.5 2.6 8.7E-05 25.8 2.5 22 91-112 14-35 (37)
94 2jun_A Midline-1; B-BOX, TRIM, 71.5 1.1 3.9E-05 32.5 0.8 29 190-219 4-35 (101)
95 3ghg_A Fibrinogen alpha chain; 70.1 13 0.00046 35.4 7.9 64 48-113 76-139 (562)
96 3oja_A Leucine-rich immune mol 70.1 56 0.0019 29.8 12.2 49 98-146 428-476 (487)
97 1kd8_B GABH BLL, GCN4 acid bas 69.4 4.5 0.00015 24.6 3.0 27 92-118 2-28 (36)
98 1jnm_A Proto-oncogene C-JUN; B 69.2 17 0.00058 24.3 6.4 26 97-122 28-53 (62)
99 2v66_B Nuclear distribution pr 69.1 14 0.00049 28.1 6.5 41 105-145 3-47 (111)
100 1kd8_A GABH AIV, GCN4 acid bas 68.1 6.4 0.00022 23.9 3.5 28 92-119 2-29 (36)
101 3hnw_A Uncharacterized protein 67.6 42 0.0014 26.2 9.5 29 93-121 105-133 (138)
102 1weo_A Cellulose synthase, cat 67.2 2.8 9.7E-05 30.9 2.1 44 188-231 15-69 (93)
103 2ct0_A Non-SMC element 1 homol 66.6 8.1 0.00028 27.0 4.4 43 189-232 15-64 (74)
104 3s9g_A Protein hexim1; cyclin 66.0 39 0.0013 25.2 8.7 31 89-126 63-93 (104)
105 3mq7_A Bone marrow stromal ant 65.1 26 0.0009 26.9 7.3 32 40-73 13-44 (121)
106 1t3j_A Mitofusin 1; coiled coi 64.6 21 0.00072 26.5 6.5 39 87-129 43-81 (96)
107 1deq_A Fibrinogen (alpha chain 60.9 1E+02 0.0034 28.2 11.7 61 53-114 84-157 (390)
108 1deq_A Fibrinogen (alpha chain 59.5 1.1E+02 0.0036 28.1 12.7 47 48-94 54-102 (390)
109 2fiy_A Protein FDHE homolog; F 59.3 3.7 0.00013 36.6 1.8 42 188-229 181-231 (309)
110 2b5u_A Colicin E3; high resolu 58.9 92 0.0031 29.6 11.2 52 95-146 353-415 (551)
111 3m91_A Proteasome-associated A 58.4 28 0.00097 22.7 5.6 31 91-121 9-39 (51)
112 2akf_A Coronin-1A; coiled coil 57.6 22 0.00074 20.7 4.3 26 97-122 5-30 (32)
113 3na7_A HP0958; flagellar bioge 56.9 88 0.003 26.3 13.4 50 94-143 93-142 (256)
114 2dq0_A Seryl-tRNA synthetase; 56.8 87 0.003 29.0 10.8 53 83-150 55-107 (455)
115 1x4t_A Hypothetical protein LO 55.7 40 0.0014 24.7 6.6 27 92-118 53-79 (92)
116 3s4r_A Vimentin; alpha-helix, 55.1 57 0.002 23.6 10.1 76 38-122 12-87 (93)
117 3m48_A General control protein 54.4 15 0.00052 21.9 3.3 26 93-118 2-27 (33)
118 1j1d_C Troponin I, TNI; THIN f 53.7 77 0.0026 24.7 10.2 45 101-145 61-105 (133)
119 2wt7_A Proto-oncogene protein 52.6 49 0.0017 22.1 8.3 33 95-127 27-59 (63)
120 1ses_A Seryl-tRNA synthetase; 51.8 1.4E+02 0.0049 27.2 11.6 74 42-121 12-87 (421)
121 1nlw_A MAD protein, MAX dimeri 51.2 40 0.0014 23.7 5.9 54 68-122 6-64 (80)
122 3i00_A HIP-I, huntingtin-inter 51.0 80 0.0027 24.1 9.2 19 54-73 16-34 (120)
123 3vkg_A Dynein heavy chain, cyt 50.8 2.7E+02 0.0094 32.4 15.2 13 107-119 2037-2049(3245)
124 3o0z_A RHO-associated protein 50.3 1E+02 0.0034 25.0 11.7 32 44-75 7-41 (168)
125 2q6q_A Spindle POLE BODY compo 49.9 62 0.0021 22.5 6.9 27 89-115 8-34 (74)
126 2oxj_A Hybrid alpha/beta pepti 49.4 20 0.00068 21.5 3.3 24 94-117 4-27 (34)
127 1uo4_A General control protein 49.0 17 0.00059 21.8 3.0 26 92-117 2-27 (34)
128 2hy6_A General control protein 48.5 19 0.00066 21.6 3.1 27 92-118 2-28 (34)
129 3qne_A Seryl-tRNA synthetase, 48.3 1.5E+02 0.0052 27.8 11.1 73 42-120 16-93 (485)
130 3c3g_A Alpha/beta peptide with 47.8 19 0.00063 21.5 3.0 22 95-116 4-25 (33)
131 2dfs_A Myosin-5A; myosin-V, in 47.4 1.8E+02 0.0062 30.0 12.3 21 98-118 998-1018(1080)
132 2wq1_A General control protein 47.4 19 0.00065 21.4 3.0 25 93-117 2-26 (33)
133 1t2k_D Cyclic-AMP-dependent tr 46.7 60 0.002 21.4 8.1 30 97-126 28-57 (61)
134 3i00_A HIP-I, huntingtin-inter 46.2 64 0.0022 24.6 6.8 39 107-145 42-80 (120)
135 1z60_A TFIIH basal transcripti 44.8 16 0.00055 24.6 2.8 36 191-227 17-59 (59)
136 3c3f_A Alpha/beta peptide with 44.8 22 0.00075 21.3 3.0 24 93-116 3-26 (34)
137 2dq3_A Seryl-tRNA synthetase; 44.5 77 0.0026 29.0 8.3 71 42-118 12-88 (425)
138 1s94_A S-syntaxin; three helix 44.5 1.1E+02 0.0038 24.1 8.4 86 60-148 49-141 (180)
139 2wvr_A Geminin; DNA replicatio 43.7 1.4E+02 0.0049 24.9 8.9 52 58-118 98-149 (209)
140 1hjb_A Ccaat/enhancer binding 43.6 89 0.003 22.5 8.1 27 99-125 44-70 (87)
141 1jnm_A Proto-oncogene C-JUN; B 43.3 31 0.0011 22.9 4.1 26 105-130 22-47 (62)
142 3u06_A Protein claret segregat 42.6 59 0.002 29.8 7.1 52 96-147 8-59 (412)
143 1ytz_T Troponin T; muscle, THI 42.3 53 0.0018 24.6 5.6 43 103-145 47-89 (107)
144 3pwf_A Rubrerythrin; non heme 42.2 9.5 0.00032 30.9 1.5 16 221-236 154-169 (170)
145 2p4v_A Transcription elongatio 42.2 93 0.0032 24.5 7.5 54 64-118 12-66 (158)
146 1j1d_B Troponin T, TNT; THIN f 42.2 56 0.0019 24.5 5.7 44 102-145 46-89 (106)
147 3ol1_A Vimentin; structural ge 42.1 1.1E+02 0.0037 23.0 12.4 78 58-142 38-117 (119)
148 3a7p_A Autophagy protein 16; c 42.0 1.3E+02 0.0045 23.9 11.1 25 98-122 103-127 (152)
149 1j1e_C Troponin I, TNI; THIN f 40.7 1.5E+02 0.0051 24.2 10.2 45 101-145 61-105 (180)
150 2bni_A General control protein 40.3 28 0.00097 20.8 3.0 26 92-117 2-27 (34)
151 3e98_A GAF domain of unknown f 40.2 67 0.0023 27.3 6.7 21 99-119 73-93 (252)
152 3ni0_A Bone marrow stromal ant 40.2 1.1E+02 0.0037 22.6 10.0 54 93-146 34-87 (99)
153 3vkg_A Dynein heavy chain, cyt 38.5 3.1E+02 0.011 32.0 13.2 13 61-73 1934-1946(3245)
154 3nmd_A CGMP dependent protein 38.5 71 0.0024 22.3 5.4 26 93-118 35-60 (72)
155 1ez3_A Syntaxin-1A; three heli 37.9 1.2E+02 0.004 22.2 10.3 85 60-147 18-109 (127)
156 1fmh_A General control protein 37.4 60 0.0021 18.7 4.4 23 99-121 9-31 (33)
157 2r2v_A GCN4 leucine zipper; co 37.1 37 0.0013 20.3 3.1 26 92-117 2-27 (34)
158 2f23_A Anti-cleavage anti-GREA 36.7 1.4E+02 0.0048 23.2 7.7 53 64-118 13-66 (156)
159 1m1j_C Fibrinogen gamma chain; 36.4 2.5E+02 0.0087 25.7 12.9 101 43-145 24-131 (409)
160 2cs3_A Protein C14ORF4, MY039 36.3 13 0.00043 27.0 1.2 31 189-219 15-48 (93)
161 1yk4_A Rubredoxin, RD; electro 35.7 17 0.00058 23.7 1.7 15 222-236 37-51 (52)
162 1gk4_A Vimentin; intermediate 35.4 1.1E+02 0.0039 21.4 7.5 21 99-119 27-47 (84)
163 2yy0_A C-MYC-binding protein; 35.3 74 0.0025 20.7 4.8 26 98-123 19-44 (53)
164 1grj_A GREA protein; transcrip 35.1 1.3E+02 0.0043 23.6 7.2 54 64-118 12-66 (158)
165 3nw0_A Non-structural maintena 34.9 18 0.00063 30.7 2.3 43 189-232 180-229 (238)
166 4rxn_A Rubredoxin; electron tr 34.7 15 0.0005 24.3 1.3 14 222-235 38-51 (54)
167 3mq7_A Bone marrow stromal ant 34.7 1.5E+02 0.0052 22.6 11.9 13 99-111 79-91 (121)
168 1ci6_A Transcription factor AT 34.7 1E+02 0.0034 20.5 6.1 37 106-142 24-60 (63)
169 4emc_A Monopolin complex subun 34.4 1.3E+02 0.0045 24.8 7.3 27 91-117 34-60 (190)
170 1zbd_B Rabphilin-3A; G protein 34.3 84 0.0029 24.2 5.9 11 135-145 36-46 (134)
171 1e8j_A Rubredoxin; iron-sulfur 34.1 16 0.00054 23.9 1.3 13 222-234 38-50 (52)
172 2v3b_B Rubredoxin 2, rubredoxi 33.9 17 0.00059 24.0 1.5 15 222-236 38-52 (55)
173 3r2p_A Apolipoprotein A-I; amp 33.7 1.8E+02 0.0061 23.1 11.5 35 39-73 67-101 (185)
174 2i1j_A Moesin; FERM, coiled-co 33.6 87 0.003 29.9 7.0 67 61-136 300-366 (575)
175 2l5u_A Chromodomain-helicase-D 33.4 22 0.00077 23.5 2.1 10 189-198 11-20 (61)
176 3ghg_C Fibrinogen gamma chain; 32.6 3E+02 0.01 25.3 13.6 105 41-147 22-133 (411)
177 2kn9_A Rubredoxin; metalloprot 32.4 22 0.00074 25.5 1.9 15 222-236 62-76 (81)
178 6rxn_A Rubredoxin; electron tr 32.4 17 0.00059 23.2 1.3 14 222-235 32-45 (46)
179 1i84_S Smooth muscle myosin he 32.4 2.3E+02 0.0078 29.3 10.4 20 99-118 914-933 (1184)
180 1gu4_A CAAT/enhancer binding p 31.5 1.3E+02 0.0046 21.0 7.0 27 99-125 44-70 (78)
181 1ich_A TNF-1, tumor necrosis f 31.5 47 0.0016 25.1 3.8 53 89-144 31-84 (112)
182 1m1j_B Fibrinogen beta chain; 31.5 2.9E+02 0.0099 25.8 10.0 72 42-117 85-158 (464)
183 1mm2_A MI2-beta; PHD, zinc fin 30.9 37 0.0013 22.4 2.8 33 189-230 9-57 (61)
184 2dgc_A Protein (GCN4); basic d 30.5 1.2E+02 0.0042 20.2 5.7 18 106-123 31-48 (63)
185 1hjb_A Ccaat/enhancer binding 29.5 1.4E+02 0.0047 21.4 5.9 39 104-142 35-73 (87)
186 3na7_A HP0958; flagellar bioge 28.8 2.5E+02 0.0087 23.4 12.5 10 190-199 199-208 (256)
187 1dx8_A Rubredoxin; electron tr 27.7 22 0.00076 24.6 1.3 15 222-236 42-56 (70)
188 2ve7_A Kinetochore protein HEC 27.7 98 0.0034 27.2 5.8 63 58-122 147-209 (315)
189 1yzm_A FYVE-finger-containing 27.7 1E+02 0.0034 20.1 4.4 41 59-103 7-47 (51)
190 1t2k_D Cyclic-AMP-dependent tr 27.7 1.3E+02 0.0045 19.6 6.3 21 106-126 23-43 (61)
191 1z0k_B FYVE-finger-containing 27.5 84 0.0029 21.8 4.2 38 62-103 28-65 (69)
192 3lay_A Zinc resistance-associa 27.5 1.1E+02 0.0039 24.7 5.7 10 50-59 71-80 (175)
193 1lko_A Rubrerythrin all-iron(I 26.9 18 0.00061 29.6 0.8 15 221-235 172-186 (191)
194 4emc_A Monopolin complex subun 26.4 1.9E+02 0.0067 23.8 6.9 41 86-126 8-48 (190)
195 3cvf_A Homer-3, homer protein 26.4 1.7E+02 0.0059 20.6 7.1 27 99-125 14-40 (79)
196 1z0j_B FYVE-finger-containing 26.1 93 0.0032 20.9 4.1 42 58-103 13-54 (59)
197 2wt7_A Proto-oncogene protein 25.5 1.5E+02 0.0051 19.6 6.7 33 106-138 24-56 (63)
198 1m1j_A Fibrinogen alpha subuni 25.4 3.8E+02 0.013 25.1 9.4 20 54-73 83-102 (491)
199 1jcd_A Major outer membrane li 25.4 1.4E+02 0.0049 19.3 6.9 27 99-125 5-31 (52)
200 1gd2_E Transcription factor PA 24.9 1.7E+02 0.0059 20.1 7.7 19 103-121 48-66 (70)
201 3i2d_A E3 SUMO-protein ligase 24.8 26 0.00088 32.0 1.5 40 190-230 250-298 (371)
202 1lwu_B Fibrinogen beta chain; 24.2 60 0.0021 28.9 3.8 20 97-116 34-53 (323)
203 3cve_A Homer protein homolog 1 24.1 1.8E+02 0.0063 20.1 6.8 25 99-123 8-32 (72)
204 3efg_A Protein SLYX homolog; x 23.7 1.9E+02 0.0065 20.1 6.8 44 106-149 15-58 (78)
205 1gu4_A CAAT/enhancer binding p 23.7 1.4E+02 0.0046 21.0 4.8 22 105-126 36-57 (78)
206 4fo9_A E3 SUMO-protein ligase 23.6 28 0.00094 31.7 1.4 41 190-231 216-265 (360)
207 2wuj_A Septum site-determining 23.1 81 0.0028 20.6 3.4 19 99-117 35-53 (57)
208 3m9b_A Proteasome-associated A 23.0 96 0.0033 26.7 4.7 45 90-148 53-97 (251)
209 1yuz_A Nigerythrin; rubrythrin 22.6 3.1E+02 0.011 22.2 14.8 47 41-87 30-86 (202)
210 3mq9_A Bone marrow stromal ant 22.2 4.2E+02 0.014 23.6 13.2 91 55-148 371-465 (471)
211 1s24_A Rubredoxin 2; electron 21.2 38 0.0013 24.5 1.5 15 222-236 70-84 (87)
212 1j1e_C Troponin I, TNI; THIN f 21.0 3.4E+02 0.012 22.1 7.9 71 78-148 70-149 (180)
213 3ghg_B Fibrinogen beta chain; 20.7 1.9E+02 0.0065 27.1 6.5 74 41-117 79-153 (461)
214 1x79_B RAB GTPase binding effe 20.7 2.5E+02 0.0086 21.1 6.1 43 99-141 21-67 (112)
215 3kin_B Kinesin heavy chain; mo 20.3 84 0.0029 23.6 3.4 27 99-125 90-116 (117)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=102.81 Aligned_cols=52 Identities=33% Similarity=0.760 Sum_probs=48.7
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcCCCCCCCcccccceEEEeeC
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~i~~~v~v~~S 239 (239)
+...|+||++++++++|+||||+++|..|+..+..||+||.+|...++||.+
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 3458999999999999999999999999999999999999999999999863
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.45 E-value=1.8e-14 Score=101.00 Aligned_cols=51 Identities=22% Similarity=0.542 Sum_probs=47.0
Q ss_pred ccccccccccccceEEe--CCCCcccccchHhcCC----CCCCCcccccceEEEeeC
Q 026366 189 QMICRACNIQEVSILLL--PCRHLCLCKDCEGLIG----VCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlll--PC~Hlc~C~~C~~~l~----~CPvCr~~i~~~v~v~~S 239 (239)
...|+||++++.+++++ ||||+++|..|+..+. .||+||.+|...++||+|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 45899999999988777 9999999999999875 999999999999999987
No 3
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.43 E-value=4.7e-14 Score=103.29 Aligned_cols=52 Identities=31% Similarity=0.775 Sum_probs=49.1
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcCCCCCCCcccccceEEEeeC
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~i~~~v~v~~S 239 (239)
+...|+||++...+++|+||||.++|..|...+..||+||.+|...+++|++
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 4458999999999999999999999999999999999999999999999975
No 4
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.42 E-value=5.4e-14 Score=101.37 Aligned_cols=52 Identities=29% Similarity=0.818 Sum_probs=48.8
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcCCCCCCCcccccceEEEeeC
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~i~~~v~v~~S 239 (239)
+...|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 4568999999999999999999999999999999999999999999999997
No 5
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.40 E-value=3.7e-14 Score=99.71 Aligned_cols=52 Identities=23% Similarity=0.451 Sum_probs=47.5
Q ss_pred cccccccccccccceEEe--CCCCcccccchHhcC----CCCCCCcccccceEEEeeC
Q 026366 188 MQMICRACNIQEVSILLL--PCRHLCLCKDCEGLI----GVCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlll--PC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v~v~~S 239 (239)
+...|.||++++.+++|+ ||||+++|..|+..+ ..||+||.+|...+++|+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 345899999999999998 999999999999876 4699999999999999986
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.1e-14 Score=101.14 Aligned_cols=52 Identities=29% Similarity=0.850 Sum_probs=49.6
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcCCCCCCCcccccceEEEeeC
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~i~~~v~v~~S 239 (239)
+...|+||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 4568999999999999999999999999999999999999999999999997
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.13 E-value=1.4e-11 Score=112.95 Aligned_cols=53 Identities=32% Similarity=0.923 Sum_probs=48.5
Q ss_pred ccccccccccccccceEEeCCCCcccccchHhcCCCCCCCcccccceEEEeeC
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCKDCEGLIGVCPVCKAMRTASVEVYLS 239 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l~~CPvCr~~i~~~v~v~~S 239 (239)
.+...|+||++...+.+++||||.|+|..|...+..||+||.+|...++||+|
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 34569999999999999999999999999999999999999999999999997
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.72 E-value=7.1e-08 Score=76.75 Aligned_cols=43 Identities=23% Similarity=0.559 Sum_probs=37.7
Q ss_pred ccccccccccceEEeCCCCcccccchHhc----CCCCCCCcccccceE
Q 026366 191 ICRACNIQEVSILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTASV 234 (239)
Q Consensus 191 ~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~~v 234 (239)
.|.||++...+.+++||||. +|..|... -..||+||.++....
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 79999999999999999996 99999764 278999999987653
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=4e-08 Score=69.29 Aligned_cols=44 Identities=25% Similarity=0.541 Sum_probs=38.5
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
+...|.||++...+.+++||||. +|..|.... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34589999999999999999999 999998764 689999998864
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.3e-08 Score=71.36 Aligned_cols=49 Identities=29% Similarity=0.638 Sum_probs=41.6
Q ss_pred ccccccccccccccceEEeCCCCcccccchHhcC----CCCCCCcccccceEEEe
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTASVEVY 237 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v~v~ 237 (239)
.+...|.||++.... +++||||. +|..|.... ..||+||.++.....+|
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 345689999999999 88999999 999998754 78999999998766554
No 11
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.54 E-value=2.5e-08 Score=69.41 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=40.9
Q ss_pred ccccccccccccc-eEEeCCCCcccccchHhc----CCCCCCCcccccceEEEe
Q 026366 189 QMICRACNIQEVS-ILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTASVEVY 237 (239)
Q Consensus 189 ~~~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~~v~v~ 237 (239)
...|.||++...+ ++++||||. +|..|... -..||+||.++...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 3489999999888 689999999 99999864 378999999999877654
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=6.2e-08 Score=69.91 Aligned_cols=46 Identities=20% Similarity=0.491 Sum_probs=39.1
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC----CCCCCCcccccceE
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTASV 234 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v 234 (239)
....|.||++...+.+++||||. +|..|.... ..||+||.++...+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 34589999999999999999999 899998653 68999999987443
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.2e-08 Score=68.18 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=38.9
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhcC-------CCCCCCcccccc
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-------GVCPVCKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-------~~CPvCr~~i~~ 232 (239)
+.+...|.||++...+.+++||||. +|..|.... ..||+||.++..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3455699999999999999999999 999998754 379999998764
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.47 E-value=7.8e-08 Score=68.57 Aligned_cols=46 Identities=28% Similarity=0.616 Sum_probs=38.7
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhc-----------CCCCCCCcccccc
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGL-----------IGVCPVCKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~-----------l~~CPvCr~~i~~ 232 (239)
+.+...|.||++...+.+.+||||. +|..|... ...||+||.++..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3456699999999999888999998 99999874 3589999998863
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=7.6e-08 Score=66.67 Aligned_cols=44 Identities=23% Similarity=0.553 Sum_probs=36.5
Q ss_pred cccccccccccccce-------EEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSI-------LLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~v-------lllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
+...|.||++..... +++||||. +|..|.... ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 455899999987664 88999997 999998654 789999998763
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.43 E-value=5.7e-08 Score=66.32 Aligned_cols=48 Identities=23% Similarity=0.597 Sum_probs=38.8
Q ss_pred cccccccccccce-------EEeCCCCcccccchHhcC----CCCCCCccccc--ceEEEee
Q 026366 190 MICRACNIQEVSI-------LLLPCRHLCLCKDCEGLI----GVCPVCKAMRT--ASVEVYL 238 (239)
Q Consensus 190 ~~C~iC~~~~~~v-------lllPC~Hlc~C~~C~~~l----~~CPvCr~~i~--~~v~v~~ 238 (239)
..|.||++..... +++||||. +|..|.... ..||+||.++. ....+|+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4899999976653 88899999 999998653 69999999987 4556654
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.3e-07 Score=68.72 Aligned_cols=46 Identities=24% Similarity=0.619 Sum_probs=38.4
Q ss_pred cccccccccccccccc----eEEeCCCCcccccchHhcC-------CCCCCCcccccc
Q 026366 186 MKMQMICRACNIQEVS----ILLLPCRHLCLCKDCEGLI-------GVCPVCKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~----vlllPC~Hlc~C~~C~~~l-------~~CPvCr~~i~~ 232 (239)
+.+...|.||++.... .+++||||. +|..|.... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3456689999999888 888999998 899998654 589999998653
No 18
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.40 E-value=1.4e-07 Score=62.78 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=35.9
Q ss_pred ccccccccccccc----eEEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 189 QMICRACNIQEVS----ILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 189 ~~~C~iC~~~~~~----vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
...|.||++...+ ++++||+|. +|..|.... ..||+||.++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3489999998655 889999997 999998754 799999998753
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2.2e-07 Score=65.60 Aligned_cols=47 Identities=21% Similarity=0.575 Sum_probs=38.9
Q ss_pred cccccccccccccccceEEe-CCCCcccccchHhc----CCCCCCCcccccce
Q 026366 186 MKMQMICRACNIQEVSILLL-PCRHLCLCKDCEGL----IGVCPVCKAMRTAS 233 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlll-PC~Hlc~C~~C~~~----l~~CPvCr~~i~~~ 233 (239)
+.+...|.||++...+.+.+ ||||. +|..|... ...||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 44567999999999887776 99999 89999854 37999999998753
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.37 E-value=2.4e-07 Score=66.42 Aligned_cols=46 Identities=28% Similarity=0.633 Sum_probs=39.0
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhc----------CCCCCCCcccccc
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGL----------IGVCPVCKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----------l~~CPvCr~~i~~ 232 (239)
+.+...|.||++...+.+++||||. +|..|... ...||+||.++..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3455689999999999889999998 99999764 4689999999864
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.37 E-value=6.1e-08 Score=67.76 Aligned_cols=44 Identities=23% Similarity=0.553 Sum_probs=36.3
Q ss_pred cccccccccccccce-------EEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSI-------LLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~v-------lllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
+...|.||++..... +++||||. +|..|.... ..||+||.++..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 345899999976664 88999998 999998643 799999999874
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.5e-07 Score=66.38 Aligned_cols=46 Identities=28% Similarity=0.614 Sum_probs=39.0
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhc----------CCCCCCCcccccc
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGL----------IGVCPVCKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----------l~~CPvCr~~i~~ 232 (239)
+.+...|.||++...+.+++||||. +|..|... ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3455699999999999888999998 99999764 4789999998874
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.34 E-value=2.9e-07 Score=65.70 Aligned_cols=44 Identities=32% Similarity=0.660 Sum_probs=35.0
Q ss_pred cccccccccccc---cceEEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 188 MQMICRACNIQE---VSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~---~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
....|.||++.. ..++.+||+|. ||..|.... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCC
Confidence 445899996654 45677899998 999997643 789999999875
No 24
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.34 E-value=2.6e-07 Score=64.39 Aligned_cols=45 Identities=27% Similarity=0.571 Sum_probs=36.3
Q ss_pred ccccccccccc---cceEEeCCCCcccccchHhcC----CCCCCCcccccceE
Q 026366 189 QMICRACNIQE---VSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTASV 234 (239)
Q Consensus 189 ~~~C~iC~~~~---~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v 234 (239)
...|.||++.. ..++.+||+|. +|..|.... ..||+||..+...+
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 44899997654 56788999999 999998643 78999999987654
No 25
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.33 E-value=1.7e-07 Score=63.43 Aligned_cols=44 Identities=32% Similarity=0.713 Sum_probs=37.6
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC-CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-~~CPvCr~~i~~ 232 (239)
+...|.||++...+.+++||||. +|..|.... ..||+||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 34589999999999999999998 899998654 689999998763
No 26
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.32 E-value=3.1e-07 Score=61.11 Aligned_cols=43 Identities=23% Similarity=0.614 Sum_probs=35.3
Q ss_pred cccccccccccccc---eEEeC-CCCcccccchHhcC----CCCCCCccccc
Q 026366 188 MQMICRACNIQEVS---ILLLP-CRHLCLCKDCEGLI----GVCPVCKAMRT 231 (239)
Q Consensus 188 ~~~~C~iC~~~~~~---vlllP-C~Hlc~C~~C~~~l----~~CPvCr~~i~ 231 (239)
+...|.||++.... ++.+| |+|. +|..|.... ..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34589999998766 77787 9998 999998653 78999998864
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.30 E-value=5e-07 Score=64.18 Aligned_cols=46 Identities=22% Similarity=0.708 Sum_probs=38.4
Q ss_pred CcccccccccccccccceEEeC-CCCcccccchHhcC------CCCCCCccccc
Q 026366 185 PMKMQMICRACNIQEVSILLLP-CRHLCLCKDCEGLI------GVCPVCKAMRT 231 (239)
Q Consensus 185 ~~~~~~~C~iC~~~~~~vlllP-C~Hlc~C~~C~~~l------~~CPvCr~~i~ 231 (239)
.+.+...|.||++...+.+.+| |||. +|..|.... ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3446679999999999999999 9998 999997643 48999999754
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=2.8e-07 Score=63.88 Aligned_cols=45 Identities=20% Similarity=0.504 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEeCCCCcccccchHhc-----CCCCCCCcccccc
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCKDCEGL-----IGVCPVCKAMRTA 232 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~-----l~~CPvCr~~i~~ 232 (239)
.+...|.||++...+.+.+||||. +|..|... ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 355689999999998888999999 89999864 2589999998764
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.5e-07 Score=64.57 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=37.0
Q ss_pred cccccccccccc---cceEEeCCCCcccccchHhcC----CCCCCCcccccceEE
Q 026366 188 MQMICRACNIQE---VSILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTASVE 235 (239)
Q Consensus 188 ~~~~C~iC~~~~---~~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~~v~ 235 (239)
....|.||++.. ..+..+||+|. ||..|.... ..||+||.++.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 445899999875 44667799999 999998653 689999999876543
No 30
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.25 E-value=2.2e-07 Score=67.52 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=37.2
Q ss_pred ccccccccccccc--cceEEeC--CCCcccccchHhcC-----CCCCCCcccccceE
Q 026366 187 KMQMICRACNIQE--VSILLLP--CRHLCLCKDCEGLI-----GVCPVCKAMRTASV 234 (239)
Q Consensus 187 ~~~~~C~iC~~~~--~~vlllP--C~Hlc~C~~C~~~l-----~~CPvCr~~i~~~v 234 (239)
.+...|.||++.. .++.++| |||. +|..|...+ ..||+||.++....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3456899999966 3456777 9998 999998765 48999999987643
No 31
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.24 E-value=4.3e-07 Score=84.34 Aligned_cols=48 Identities=23% Similarity=0.692 Sum_probs=42.2
Q ss_pred cccccccccccceEEeCCCCcccccchHhc-----CCCCCCCcccccceEEEee
Q 026366 190 MICRACNIQEVSILLLPCRHLCLCKDCEGL-----IGVCPVCKAMRTASVEVYL 238 (239)
Q Consensus 190 ~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~-----l~~CPvCr~~i~~~v~v~~ 238 (239)
..|.||++...+.+++||||. +|..|... ...||+||.++.....+++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 689999999999999999999 69999763 4799999999998776653
No 32
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.23 E-value=4.4e-07 Score=67.17 Aligned_cols=44 Identities=36% Similarity=0.821 Sum_probs=36.4
Q ss_pred cccccccccccccc---eEEeCCCCcccccchHhc----CCCCCCCcccccc
Q 026366 188 MQMICRACNIQEVS---ILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~---vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~ 232 (239)
....|.||++.... ++.+||+|. ||..|... -..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45689999987665 888999997 99999764 3789999998764
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.22 E-value=5.7e-07 Score=66.13 Aligned_cols=44 Identities=20% Similarity=0.683 Sum_probs=37.6
Q ss_pred cccccccccccccccceEEeC-CCCcccccchHhcC------CCCCCCcccc
Q 026366 186 MKMQMICRACNIQEVSILLLP-CRHLCLCKDCEGLI------GVCPVCKAMR 230 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllP-C~Hlc~C~~C~~~l------~~CPvCr~~i 230 (239)
+.+...|.||++...+-+.+| |||. +|..|.... ..||+||.++
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345669999999999989999 9999 899997543 5899999986
No 34
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=5.7e-07 Score=63.82 Aligned_cols=44 Identities=27% Similarity=0.630 Sum_probs=35.4
Q ss_pred ccccccccccccc---ceEEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEV---SILLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~---~vlllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
+...|.||++... .++.+||+|. +|..|.... ..||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3458999997644 3588999998 999998653 789999998864
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.17 E-value=4.5e-07 Score=62.59 Aligned_cols=42 Identities=29% Similarity=0.736 Sum_probs=33.0
Q ss_pred cccccccc-cccc----eEEeCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 190 MICRACNI-QEVS----ILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 190 ~~C~iC~~-~~~~----vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
..|.||++ ...+ ++++||||. +|..|.... ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 3222 267899999 899998654 579999999864
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.16 E-value=4.5e-07 Score=70.53 Aligned_cols=44 Identities=25% Similarity=0.524 Sum_probs=37.7
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
+...|.||++...+.+.+||||. +|..|.... ..||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34589999999999999999999 899997542 489999999875
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.15 E-value=8.5e-07 Score=67.97 Aligned_cols=45 Identities=31% Similarity=0.636 Sum_probs=38.3
Q ss_pred ccccccccccccccceEEeCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
.+...|.||++.....+.+||||. +|..|.... ..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345689999999999888999999 999998654 489999998753
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=9.7e-07 Score=59.08 Aligned_cols=39 Identities=28% Similarity=0.670 Sum_probs=33.4
Q ss_pred ccccccccccccccceEEeCCCCcccccchHhcC-------CCCCCC
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-------GVCPVC 226 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-------~~CPvC 226 (239)
.+...|.||++...+.+++||||. +|..|.... ..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 355689999999999889999999 999997543 689998
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=6.4e-07 Score=67.91 Aligned_cols=44 Identities=27% Similarity=0.536 Sum_probs=36.9
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC-------CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-------GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-------~~CPvCr~~i~~ 232 (239)
....|.||++...+.+.+||||. +|..|.... ..||+||.++..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34589999999999888999998 899997643 379999998764
No 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.09 E-value=1.3e-06 Score=62.14 Aligned_cols=45 Identities=7% Similarity=0.019 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEeCCCCcccccchHhc-----CCCCCCCcccccc
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCKDCEGL-----IGVCPVCKAMRTA 232 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~-----l~~CPvCr~~i~~ 232 (239)
.+...|.||++-..+-+.+||||. +|..|... ...||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 355699999999999888999999 89999754 3579999999864
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.06 E-value=8.1e-07 Score=66.85 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=37.8
Q ss_pred cccccccccccccceEE-eCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILL-LPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vll-lPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
+...|.||++...+.+. +||||. +|..|.... ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 45689999999999888 999999 899997643 589999998754
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.05 E-value=9.8e-07 Score=65.86 Aligned_cols=44 Identities=23% Similarity=0.477 Sum_probs=37.2
Q ss_pred cccccccccccccceEEe-CCCCcccccchHhcC----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLL-PCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlll-PC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
+...|.||++...+.+.+ ||||. +|..|.... ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 455899999998888777 99999 899997643 689999998874
No 43
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=1.8e-06 Score=59.02 Aligned_cols=40 Identities=28% Similarity=0.659 Sum_probs=33.8
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhcC-------CCCCCC
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-------GVCPVC 226 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-------~~CPvC 226 (239)
+.+...|.||++...+.+++||||. +|..|.... ..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 3456699999999999999999999 999997643 479998
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.04 E-value=1.6e-06 Score=65.77 Aligned_cols=44 Identities=23% Similarity=0.588 Sum_probs=38.0
Q ss_pred cccccccccccccceEEe-CCCCcccccchHhcC----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLL-PCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlll-PC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
+...|.||++...+.+.+ ||||. +|..|.... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 456899999999988887 99999 899998654 789999999875
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.03 E-value=1.1e-06 Score=71.11 Aligned_cols=44 Identities=25% Similarity=0.550 Sum_probs=37.7
Q ss_pred ccccccccccccceEEeCCCCcccccchHhcC-----CCCCCCcccccce
Q 026366 189 QMICRACNIQEVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTAS 233 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~~ 233 (239)
...|.||++...+.+.+||||. +|..|.... ..||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3489999999999999999998 899997653 3799999998753
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.02 E-value=1.5e-06 Score=70.82 Aligned_cols=45 Identities=22% Similarity=0.574 Sum_probs=37.7
Q ss_pred cccccccccccccccceEEe-CCCCcccccchHhcC-----CCCCCCccccc
Q 026366 186 MKMQMICRACNIQEVSILLL-PCRHLCLCKDCEGLI-----GVCPVCKAMRT 231 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlll-PC~Hlc~C~~C~~~l-----~~CPvCr~~i~ 231 (239)
+.....|.||++...+.+.+ ||||. +|..|.... ..||+||.++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 44567999999999997776 99998 899998653 57999999885
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.99 E-value=2.7e-06 Score=65.67 Aligned_cols=46 Identities=24% Similarity=0.508 Sum_probs=39.4
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
+.+...|.||++...+.+.+||||. +|..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456799999999999889999999 999998653 499999999875
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.98 E-value=1.9e-06 Score=66.48 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=37.8
Q ss_pred cccccccccccccceEEe-CCCCcccccchHhcC--CCCCCCccccc
Q 026366 188 MQMICRACNIQEVSILLL-PCRHLCLCKDCEGLI--GVCPVCKAMRT 231 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlll-PC~Hlc~C~~C~~~l--~~CPvCr~~i~ 231 (239)
+...|.||++...+.+.+ ||||. +|..|.... ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 456899999999998888 99999 899998765 58999999875
No 49
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.85 E-value=3.2e-05 Score=64.63 Aligned_cols=44 Identities=9% Similarity=-0.132 Sum_probs=36.6
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
....|+||++-..+-|.+||||. +|..|-... ..||+|+.++..
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 44589999999999999999998 899996432 359999998764
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.85 E-value=3.8e-06 Score=64.39 Aligned_cols=44 Identities=23% Similarity=0.535 Sum_probs=38.0
Q ss_pred cccccccccccccceEEeCCCCcccccchHhc-----CCCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGL-----IGVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~-----l~~CPvCr~~i~~ 232 (239)
+...|.||++...+.+.+||||. +|..|... -..||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45689999999999899999999 89999754 3589999999764
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.76 E-value=5.8e-06 Score=62.97 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=32.1
Q ss_pred cccccccccc------------------ceEEeCCCCcccccchHhc---------CCCCCCCcccccc
Q 026366 191 ICRACNIQEV------------------SILLLPCRHLCLCKDCEGL---------IGVCPVCKAMRTA 232 (239)
Q Consensus 191 ~C~iC~~~~~------------------~vlllPC~Hlc~C~~C~~~---------l~~CPvCr~~i~~ 232 (239)
.|.||++... .+.++||+|. ||..|... -..||+||..+..
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 7999988753 3448899998 99999643 2589999988753
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.72 E-value=7.5e-06 Score=63.11 Aligned_cols=43 Identities=23% Similarity=0.593 Sum_probs=35.9
Q ss_pred ccccccccccccce-------EEeCCCCcccccchHhcC----CCCCCCcccccc
Q 026366 189 QMICRACNIQEVSI-------LLLPCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 189 ~~~C~iC~~~~~~v-------lllPC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
...|.||++...+. +.+||||. +|..|.... ..||+||..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 45899999977664 88999997 999998643 689999999874
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.69 E-value=1.2e-05 Score=61.89 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=39.8
Q ss_pred cccccccccccccce-------EEeCCCCcccccchHhc----CCCCCCCcccccc--eEEEee
Q 026366 188 MQMICRACNIQEVSI-------LLLPCRHLCLCKDCEGL----IGVCPVCKAMRTA--SVEVYL 238 (239)
Q Consensus 188 ~~~~C~iC~~~~~~v-------lllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~--~v~v~~ 238 (239)
+...|.||++..... +.+||||. +|..|... ...||+||.++.. .+.+|+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 445899999876654 88899999 99999764 3899999999774 556664
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=1.9e-05 Score=57.07 Aligned_cols=30 Identities=23% Similarity=0.578 Sum_probs=23.4
Q ss_pred eEEeCCCCcccccchHhc----CCCCCCCcccccc
Q 026366 202 ILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTA 232 (239)
Q Consensus 202 vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~ 232 (239)
+++.+|+|. |+..|... -..||+||.++..
T Consensus 43 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 43 VVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp EEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred EEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 344469999 99999764 2789999998653
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.58 E-value=3e-05 Score=63.21 Aligned_cols=46 Identities=24% Similarity=0.508 Sum_probs=39.6
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
+.+...|.||++-..+-+.+||||. +|..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3466799999999999888999999 899998653 499999999875
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.53 E-value=9.2e-06 Score=65.07 Aligned_cols=44 Identities=23% Similarity=0.510 Sum_probs=37.3
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhcC-----CCCCCCcccc
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMR 230 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i 230 (239)
+.+...|.||++-..+-+.+||||. +|..|.... ..||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3466799999999888888999999 999998653 4899999975
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.38 E-value=0.0001 Score=53.85 Aligned_cols=45 Identities=11% Similarity=-0.015 Sum_probs=38.5
Q ss_pred ccccccccccccccceEEeCCCCcccccchHhc----CCCCCCCcccccc
Q 026366 187 KMQMICRACNIQEVSILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTA 232 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~ 232 (239)
.....|.||++-..+-|.+||||. +|..|-.. ...||+|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 356699999999999999999999 99999654 3799999998764
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.37 E-value=9.4e-05 Score=63.76 Aligned_cols=44 Identities=9% Similarity=-0.121 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCCCcccccchHhcC-----CCCCCCcccccc
Q 026366 188 MQMICRACNIQEVSILLLPCRHLCLCKDCEGLI-----GVCPVCKAMRTA 232 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l-----~~CPvCr~~i~~ 232 (239)
....|+||++-..+-|.+||||. +|..|.... ..||+|+.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 55689999999999999999999 999996532 349999999864
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.35 E-value=9.7e-05 Score=55.76 Aligned_cols=46 Identities=9% Similarity=-0.048 Sum_probs=39.1
Q ss_pred cccccccccccccccceEEeCCCCcccccchHhc----CCCCCCCcccccc
Q 026366 186 MKMQMICRACNIQEVSILLLPCRHLCLCKDCEGL----IGVCPVCKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i~~ 232 (239)
+.....|.||++-..+-|.+||||. +|..|-.. ...||+|+.++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3456799999999999999999999 99999654 3689999998764
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.29 E-value=0.00015 Score=54.53 Aligned_cols=45 Identities=9% Similarity=-0.022 Sum_probs=38.3
Q ss_pred ccccccccccccccceEEeCCC-CcccccchHhc----CCCCCCCcccccc
Q 026366 187 KMQMICRACNIQEVSILLLPCR-HLCLCKDCEGL----IGVCPVCKAMRTA 232 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~-Hlc~C~~C~~~----l~~CPvCr~~i~~ 232 (239)
.....|.||++-..+-|.+||| |. +|..|... ...||+|+.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3566999999999999999999 98 89999654 3689999998764
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.18 E-value=0.00015 Score=55.49 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=24.1
Q ss_pred eEEeCCCCcccccchHhc----CCCCCCCcccc
Q 026366 202 ILLLPCRHLCLCKDCEGL----IGVCPVCKAMR 230 (239)
Q Consensus 202 vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i 230 (239)
++++||+|. ++..|... -..||+||..+
T Consensus 68 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 68 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp EEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred EeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence 688899999 99999865 37899999985
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.83 E-value=0.00018 Score=56.09 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=0.0
Q ss_pred cccccccccc------------------ceEEeCCCCcccccchHhc----CCCCCCCcccc
Q 026366 191 ICRACNIQEV------------------SILLLPCRHLCLCKDCEGL----IGVCPVCKAMR 230 (239)
Q Consensus 191 ~C~iC~~~~~------------------~vlllPC~Hlc~C~~C~~~----l~~CPvCr~~i 230 (239)
.|.||++... .++++||+|. ++..|... -..||+||.++
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp --------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 7888876543 3556799999 99999865 27899999885
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.64 E-value=0.00089 Score=49.53 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=34.0
Q ss_pred cccccccccccccceEEeC-CCCcccccchHhcC----------CCCCC--Cccc
Q 026366 188 MQMICRACNIQEVSILLLP-CRHLCLCKDCEGLI----------GVCPV--CKAM 229 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllP-C~Hlc~C~~C~~~l----------~~CPv--Cr~~ 229 (239)
....|+||++-..+-|.+| |||. +|..|.... ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4568999999999999997 9999 999996432 38999 9854
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.0013 Score=47.59 Aligned_cols=43 Identities=33% Similarity=0.669 Sum_probs=32.9
Q ss_pred ccccccccccc--cceEEeCCC-----CcccccchHhcC------CCCCCCcccccc
Q 026366 189 QMICRACNIQE--VSILLLPCR-----HLCLCKDCEGLI------GVCPVCKAMRTA 232 (239)
Q Consensus 189 ~~~C~iC~~~~--~~vlllPC~-----Hlc~C~~C~~~l------~~CPvCr~~i~~ 232 (239)
...|.||++.. .+.+++||+ |. +-..|...- ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 44899999753 345679997 98 899997542 489999998754
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.46 E-value=0.0021 Score=48.77 Aligned_cols=44 Identities=27% Similarity=0.707 Sum_probs=32.1
Q ss_pred ccccccccccc-eEEeCCCCcccccchHhc-----CCCCCCCcccccceEE
Q 026366 191 ICRACNIQEVS-ILLLPCRHLCLCKDCEGL-----IGVCPVCKAMRTASVE 235 (239)
Q Consensus 191 ~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~-----l~~CPvCr~~i~~~v~ 235 (239)
.|..|.-.-.. .-++||.|. +|..|+.. ...||+|+.+|...=.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 46666554443 446799995 99999954 4799999999876544
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.37 E-value=0.00068 Score=49.86 Aligned_cols=40 Identities=20% Similarity=0.473 Sum_probs=29.5
Q ss_pred ccccccccccccc---eEEeCCCCcccccchHhcC------------CCCCC--Cccc
Q 026366 189 QMICRACNIQEVS---ILLLPCRHLCLCKDCEGLI------------GVCPV--CKAM 229 (239)
Q Consensus 189 ~~~C~iC~~~~~~---vlllPC~Hlc~C~~C~~~l------------~~CPv--Cr~~ 229 (239)
...|.||++.... +.+.||||. +|..|.... ..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4489999986543 233489999 999995421 37999 9987
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.0047 Score=54.45 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=36.7
Q ss_pred cccccccccccccccceEE-eCCCCcccccchHhcC------CCCCC--Ccccccc
Q 026366 186 MKMQMICRACNIQEVSILL-LPCRHLCLCKDCEGLI------GVCPV--CKAMRTA 232 (239)
Q Consensus 186 ~~~~~~C~iC~~~~~~vll-lPC~Hlc~C~~C~~~l------~~CPv--Cr~~i~~ 232 (239)
......|+||+.-..+-|. ..|||. +|..|.... ..||+ |+..+..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3456799999999998775 599997 999997643 36999 9987643
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.86 E-value=0.74 Score=38.46 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=62.8
Q ss_pred cccccccchHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 026366 34 IPHILSLGDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEK 113 (239)
Q Consensus 34 ~~~~~~~~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeEr 113 (239)
+|.|.|..+.+... +...+. +..+.+.++..+.|- +-.++.|=+-+|+ +|+.+.+++.+|..+
T Consensus 2 ~~~f~s~~ee~~yw----k~~~~~-~~q~~~~le~El~EF-qesSrELE~ELE~-----------eL~~~Ek~~~~L~~~ 64 (189)
T 2v71_A 2 AMDFSSLKEETAYW----KELSMK-YKQSFQEARDELVEF-QEGSRELEAELEA-----------QLVQAEQRNRDLQAD 64 (189)
T ss_dssp --CCSSHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 34556666655432 111111 234556677777776 6667777666666 999999999999999
Q ss_pred HHHhHHHHHhHHHHhhhhHHH----HHHHHHhHHHH
Q 026366 114 IKQVSMEVQSWHYKAKYNESV----VNALKNNLKQA 145 (239)
Q Consensus 114 l~ql~~E~q~Wq~~A~~~Ea~----~~~Lr~~Lqq~ 145 (239)
+.++..|...|+.+....... ++.|...+.++
T Consensus 65 ~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l 100 (189)
T 2v71_A 65 NQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877655443 55555544443
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=92.08 E-value=0.064 Score=36.44 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=29.1
Q ss_pred ccccccccccccceEEeCCCCcc----cccchHhc------CCCCCCCccccc
Q 026366 189 QMICRACNIQEVSILLLPCRHLC----LCKDCEGL------IGVCPVCKAMRT 231 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc----~C~~C~~~------l~~CPvCr~~i~ 231 (239)
...|.||++....-++.||.+.- +=..|... -..||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34899999877666789986421 22335332 368999998764
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=91.90 E-value=0.067 Score=36.39 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=35.7
Q ss_pred cccccccccccceEEe-CCCCcccccchHhcC----CCCCCCcccccc
Q 026366 190 MICRACNIQEVSILLL-PCRHLCLCKDCEGLI----GVCPVCKAMRTA 232 (239)
Q Consensus 190 ~~C~iC~~~~~~vlll-PC~Hlc~C~~C~~~l----~~CPvCr~~i~~ 232 (239)
..|.||++-..+-++. ||||. ++..|.... ..||+++.++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 4799999999998888 99998 899997653 679999988754
No 71
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.47 E-value=5.4 Score=33.18 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=47.8
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHhc
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQG 149 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~~ 149 (239)
+.....||..++..+..|..+|+.+...+...-+..+...+.+..+...|.+++...
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344455888899999999999999999999998888888888888888888887654
No 72
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=90.93 E-value=0.43 Score=30.22 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYK 127 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~ 127 (239)
....+..+|+||++|+..+..|++..+.+
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44455679999999999999999977654
No 73
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.14 E-value=5.1 Score=30.59 Aligned_cols=78 Identities=10% Similarity=0.220 Sum_probs=57.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHH
Q 026366 60 RIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALK 139 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr 139 (239)
....|.+|..++...+- .-..++.+++ ||..++..+-.|..+++.+.+.+....+.++..-+.+..+-
T Consensus 16 ~~E~e~~k~K~~~~~~e-~~~~~~~Lq~-----------El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 16 KYEVEALKEKLEHQYAQ-SYKQVSVLED-----------DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 34444455555444222 2334455555 89999999999999999999999999988888888888888
Q ss_pred HhHHHHHHhc
Q 026366 140 NNLKQAVAQG 149 (239)
Q Consensus 140 ~~Lqq~~~~~ 149 (239)
..+.+++...
T Consensus 84 ~k~n~aiErn 93 (111)
T 2v66_B 84 QRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888886554
No 74
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=90.11 E-value=0.8 Score=33.26 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=32.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhcchHHHHHHHHHHHHHHHHHHH
Q 026366 62 QEGNLIKGVREMKQRHTYSFLSAIEK--EVGRRLHGKEMEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 62 q~e~lr~~l~e~r~r~~r~Ll~~~e~--~~~~rlreke~Eie~~~~~n~eLeErl~q 116 (239)
-.+++++.|.|+||. +|-.+++. ..-..+..|++||..++..|.+|.+...+
T Consensus 17 pse~YWk~lAE~Rr~---AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 17 PSSQYWKEVAEQRRK---ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp TTCTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999884 34444442 24455666677777777777666654443
No 75
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=90.03 E-value=1.1 Score=32.26 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhcchHHHHHHHHHHHHHHHHHHHh
Q 026366 63 EGNLIKGVREMKQRHTYSFLSAIEKE--VGRRLHGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 63 ~e~lr~~l~e~r~r~~r~Ll~~~e~~--~~~rlreke~Eie~~~~~n~eLeErl~ql 117 (239)
.+++++.|.|+|| .+|-.+++.- .-..+.+|++||..++..|..|.+-+..+
T Consensus 14 se~YWk~lAE~RR---~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 14 SSQYWKEVAEQRR---KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp TCTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999888 3444555432 34456666677776666666665544443
No 76
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=89.11 E-value=1.7 Score=31.55 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=31.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhcchHHHHHHHHHHHHHHHHHH
Q 026366 61 IQEGNLIKGVREMKQRHTYSFLSAIEKE--VGRRLHGKEMEIEVMNCKNKELVEKIK 115 (239)
Q Consensus 61 ~q~e~lr~~l~e~r~r~~r~Ll~~~e~~--~~~rlreke~Eie~~~~~n~eLeErl~ 115 (239)
.-.+++++.|.|.||. +|-.+++.- .-.++-.+++||..++..|.+|.+.+.
T Consensus 24 ~Pse~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 24 NPSSQYWKEVAEKRRK---ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999883 344444432 334455566666666666666555443
No 77
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=88.48 E-value=3.3 Score=29.67 Aligned_cols=37 Identities=16% Similarity=0.348 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhhhcch----HHHHHHHHHHHHHHHHHHH
Q 026366 80 SFLSAIEKEVGRRLHGKE----MEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 80 ~Ll~~~e~~~~~rlreke----~Eie~~~~~n~eLeErl~q 116 (239)
+|++|||..+-+|++|+- +||+.+++-..||.+--..
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~K 43 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQK 43 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHH
Confidence 477888888888877765 4888887777776644333
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.47 E-value=14 Score=34.67 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHH
Q 026366 82 LSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQ 144 (239)
Q Consensus 82 l~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq 144 (239)
+....+.+..+...++.++++..+...++++..+++..|...+...-......+..|+..++.
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 334444445555555555555555555566666666666666666555555555444444333
No 79
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.18 E-value=3.7 Score=37.69 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 026366 55 FDQYVRIQEGNLIKGVREMKQRH 77 (239)
Q Consensus 55 id~~l~~q~e~lr~~l~e~r~r~ 77 (239)
+.++|+-+.+++++.+.+.|++-
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHh
Confidence 44455555555555555555443
No 80
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=85.90 E-value=4.7 Score=33.88 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHH
Q 026366 61 IQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVN 136 (239)
Q Consensus 61 ~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~ 136 (239)
.-.++||..|.|.||. +|-.+++ |.+.+..++..|++.+..+..|+..-+.+|..-+.+|.
T Consensus 93 ~Pse~YWk~lAE~RR~---AL~eaLe------------EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~ 153 (209)
T 2wvr_A 93 NPSSQYWKEVAEKRRK---ALYEALK------------ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAE 153 (209)
T ss_dssp SCCTTHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999983 3444444 33334444444444444444444444444443333333
No 81
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.69 E-value=2.4 Score=39.07 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=50.8
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHh
Q 026366 91 RRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 91 ~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~ 148 (239)
.++.+++.+|+.+.++..+|++.++++..+...+...-...|.+-..|.++++.+...
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3567778899999999999999999999999999999999999999999999988544
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.86 E-value=20 Score=34.31 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=48.7
Q ss_pred chHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhcchHHHHHHHHHHH-HHHHHHHH
Q 026366 41 GDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHT---YSFLSAIEKEVGRRLHGKEMEIEVMNCKNK-ELVEKIKQ 116 (239)
Q Consensus 41 ~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~---r~Ll~~~e~~~~~rlreke~Eie~~~~~n~-eLeErl~q 116 (239)
|=.|..-|.+|..++...| ++||..+++. ++-. -+.+..+-..+.+++.... +.++...+.. +|+.++..
T Consensus 48 GCrLQglLdkqErDltkrI----NELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqy 121 (562)
T 3ghg_A 48 GCRMKGLIDEVNQDFTNRI----NKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEV 121 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHH
T ss_pred ccchhhhHHhhcCcHHHHH----HHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHH
Confidence 3345555666666665443 4555555555 2222 2223333333334444433 4444444444 77777777
Q ss_pred hHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 117 VSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 117 l~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
|..+.+.--..-+.-+..+..++..||++
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666543333333344455555555554
No 83
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=80.84 E-value=0.52 Score=35.20 Aligned_cols=47 Identities=26% Similarity=0.729 Sum_probs=37.4
Q ss_pred ccccccccccccccceEEeCCC-CcccccchHhcC----CCCCCCcccccceEEE
Q 026366 187 KMQMICRACNIQEVSILLLPCR-HLCLCKDCEGLI----GVCPVCKAMRTASVEV 236 (239)
Q Consensus 187 ~~~~~C~iC~~~~~~vlllPC~-Hlc~C~~C~~~l----~~CPvCr~~i~~~v~v 236 (239)
.+...|+.||-...+.| -|. |+ +|..|-..| +.||+|..++...+.+
T Consensus 26 ~G~~nCKsCWf~~k~LV--~C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGLV--ECNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCCCCSSCSCCSSEE--ECSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cCcccChhhccccCCee--eecchh-hHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 35568999999998654 466 76 999999876 8999999988766543
No 84
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=80.42 E-value=1.7 Score=26.29 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~ 118 (239)
-.+|+.++++|+-|+++++.|+
T Consensus 13 qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHHHHhcC
Confidence 3589999999999999998763
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.91 E-value=8.9 Score=27.61 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHH
Q 026366 104 NCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 104 ~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
+.....|.....++..|-..|+.
T Consensus 47 ~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 47 QHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334466666667777777765
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.92 E-value=26 Score=32.70 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=5.4
Q ss_pred HHHHHhHHHHH
Q 026366 136 NALKNNLKQAV 146 (239)
Q Consensus 136 ~~Lr~~Lqq~~ 146 (239)
..++..++++.
T Consensus 568 ~~~~~~~~~l~ 578 (597)
T 3oja_B 568 SLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555553
No 87
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.67 E-value=3.5 Score=28.05 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 026366 96 KEMEIEVMNCKNKELVEKIKQVSMEVQSWHYK 127 (239)
Q Consensus 96 ke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~ 127 (239)
.+.+++.+...|.+|+.++..+..|++.|..+
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477788889999999999999998877654
No 88
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=78.33 E-value=20 Score=27.35 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=23.2
Q ss_pred ccccchHHHHHHhhHHHHHHHHHHHHHHh
Q 026366 37 ILSLGDNLKLEIGRQKEEFDQYVRIQEGN 65 (239)
Q Consensus 37 ~~~~~~~l~~~l~~q~~eid~~l~~q~e~ 65 (239)
+...+|-|.-||++=+.+.|.+++.|.++
T Consensus 30 ~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 30 FPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999988765
No 89
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=76.75 E-value=0.42 Score=43.84 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=31.6
Q ss_pred ccccccccccccc---e---E--EeCCCCcccccchHhc---------------CCCCCCCcccccceEE
Q 026366 189 QMICRACNIQEVS---I---L--LLPCRHLCLCKDCEGL---------------IGVCPVCKAMRTASVE 235 (239)
Q Consensus 189 ~~~C~iC~~~~~~---v---l--llPC~Hlc~C~~C~~~---------------l~~CPvCr~~i~~~v~ 235 (239)
...|.||++.... + + -.+|+|. +=..|-.. ...||.|+.+|..++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 3489999985544 1 1 2368888 77778532 1579999999987653
No 90
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=75.98 E-value=8 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.274 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHH
Q 026366 96 KEMEIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 96 ke~Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
-+.||+....++.+|+.+++.|...+
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36799999999999999999988543
No 91
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.15 E-value=2.3 Score=30.21 Aligned_cols=30 Identities=33% Similarity=0.347 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHh
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWHYKA 128 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A 128 (239)
|.|-++.++.||++++.+|..||...+..|
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788899999999999999999998665543
No 92
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=73.95 E-value=35 Score=32.26 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=38.6
Q ss_pred chHHHHHHhhHHHH-----HHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch-------HHHHHHHHH
Q 026366 41 GDNLKLEIGRQKEE-----FDQYVRIQEGN--LIKGVREMKQRHTYSFLSAIEKEVGRRLHGKE-------MEIEVMNCK 106 (239)
Q Consensus 41 ~~~l~~~l~~q~~e-----id~~l~~q~e~--lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke-------~Eie~~~~~ 106 (239)
++.+...+.+++.+ +|.++.+-.++ +...+++. ++--.++.+.+.+..+.++ ++++.+..+
T Consensus 50 ~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l-----~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~ 124 (501)
T 1wle_A 50 PEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSL-----EEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRAR 124 (501)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhcCccccccccccHHHHHHH
Confidence 34555667766643 78877654322 22222222 2222345555544333221 456666667
Q ss_pred HHHHHHHHHHhHHH
Q 026366 107 NKELVEKIKQVSME 120 (239)
Q Consensus 107 n~eLeErl~ql~~E 120 (239)
..+|.++++.+..+
T Consensus 125 ~~~l~~~i~~l~~~ 138 (501)
T 1wle_A 125 GREIRKQLTLLYPK 138 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766543
No 93
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=73.46 E-value=2.6 Score=25.77 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=18.0
Q ss_pred hhhhcchHHHHHHHHHHHHHHH
Q 026366 91 RRLHGKEMEIEVMNCKNKELVE 112 (239)
Q Consensus 91 ~rlreke~Eie~~~~~n~eLeE 112 (239)
+-+.+|++||.+++.+|.+|.|
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHh
Confidence 3456678999999999999876
No 94
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=71.46 E-value=1.1 Score=32.47 Aligned_cols=29 Identities=17% Similarity=0.638 Sum_probs=21.8
Q ss_pred ccccccccc---ccceEEeCCCCcccccchHhc
Q 026366 190 MICRACNIQ---EVSILLLPCRHLCLCKDCEGL 219 (239)
Q Consensus 190 ~~C~iC~~~---~~~vlllPC~Hlc~C~~C~~~ 219 (239)
..|.+|.+. ++...-++|+|. +|..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 489999964 333333899999 99999864
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.12 E-value=13 Score=35.44 Aligned_cols=64 Identities=5% Similarity=-0.017 Sum_probs=33.4
Q ss_pred HhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 026366 48 IGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEK 113 (239)
Q Consensus 48 l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeEr 113 (239)
+++-..+++.|++...|.||..+.... +....+..+-..+.+++...+++|++-..++..|+..
T Consensus 76 lsKnsKdseqy~k~~~E~Lr~rq~q~~--dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 76 YQKNNKDSHSLTTNIMEILRGDFSSAN--NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSHHHHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556788888888888877666554 3333333333333333333334444433333344333
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.07 E-value=56 Score=29.79 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHH
Q 026366 98 MEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAV 146 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~ 146 (239)
.|.+++++-.....+++.++..|+..-+....+....+..-+.+++.+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 3445555555555555566665655555555555555555555555543
No 97
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.36 E-value=4.5 Score=24.63 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=18.8
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
|+.+.+..+|.+..++++|+..+.++.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 556666677777888888876666554
No 98
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.22 E-value=17 Score=24.28 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
+.+++.+...|.+|...+..|..|+.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554443
No 99
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.09 E-value=14 Score=28.06 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHhhhhHHH----HHHHHHhHHHH
Q 026366 105 CKNKELVEKIKQVSMEVQSWHYKAKYNESV----VNALKNNLKQA 145 (239)
Q Consensus 105 ~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~----~~~Lr~~Lqq~ 145 (239)
+++.+|..+..++..|...|+.+....... ++.|...|.++
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~l 47 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 47 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999887776654 44454444444
No 100
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.13 E-value=6.4 Score=23.95 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=21.0
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
|+.+.+..++.+..++++|+..+.++..
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667777888888888888877766653
No 101
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.56 E-value=42 Score=26.17 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=18.9
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhHHHH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
+.+...+++.+.+++.+|++++..+.++.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567777777777777777776543
No 102
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.17 E-value=2.8 Score=30.87 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=31.7
Q ss_pred cccccccccccccc----eEEeCCCCc--ccccchHhcC-----CCCCCCccccc
Q 026366 188 MQMICRACNIQEVS----ILLLPCRHL--CLCKDCEGLI-----GVCPVCKAMRT 231 (239)
Q Consensus 188 ~~~~C~iC~~~~~~----vlllPC~Hl--c~C~~C~~~l-----~~CPvCr~~i~ 231 (239)
....|.||.+..-. -+|+-|..- .+|..|..-. ..||.|.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34599999986322 367777643 4799997642 89999998765
No 103
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.62 E-value=8.1 Score=27.04 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=27.7
Q ss_pred ccccccccccccceEE-eCCCCcccccchHhc------CCCCCCCcccccc
Q 026366 189 QMICRACNIQEVSILL-LPCRHLCLCKDCEGL------IGVCPVCKAMRTA 232 (239)
Q Consensus 189 ~~~C~iC~~~~~~vll-lPC~Hlc~C~~C~~~------l~~CPvCr~~i~~ 232 (239)
...|.||++-...-.. ..|+|. |=..|..+ -..||+|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3489999886653222 256666 55566542 1689999988654
No 104
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=65.98 E-value=39 Score=25.18 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=20.4
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
...++++.+.|+++++..|.. |..|+..|..
T Consensus 63 ~~~~v~eLe~everL~~ENq~-------L~~e~~~~~~ 93 (104)
T 3s9g_A 63 LDARVRELELELDRLRAENLQ-------LLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHH-------HHHHHHhhcc
Confidence 356777777777777777665 3456667754
No 105
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=65.12 E-value=26 Score=26.85 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=19.2
Q ss_pred cchHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH
Q 026366 40 LGDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREM 73 (239)
Q Consensus 40 ~~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~ 73 (239)
.-|+|.++-+ =..+-++|+.|.-+-...|.+.
T Consensus 13 C~dGLrAq~E--CrN~T~lLq~qLTqAQe~l~~~ 44 (121)
T 3mq7_A 13 ARDGLRAVME--ARNVTHLLQQELTEAQKGFQDV 44 (121)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHH
Confidence 3566765433 2357788887766666555555
No 106
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=64.59 E-value=21 Score=26.45 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=20.1
Q ss_pred HHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhh
Q 026366 87 KEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAK 129 (239)
Q Consensus 87 ~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~ 129 (239)
..|..-.++.+.||.++.++...|+.-..... .|+++|-
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK----~LRnKA~ 81 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQNNSK----LLRNKAV 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHH
Confidence 33333344445567666666666664444333 4554443
No 107
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.87 E-value=1e+02 Score=28.24 Aligned_cols=61 Identities=8% Similarity=0.025 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 026366 53 EEFDQYVRIQEGNLIKGVREMK-------------QRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKI 114 (239)
Q Consensus 53 ~eid~~l~~q~e~lr~~l~e~r-------------~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl 114 (239)
.+++.|++.-.+.||..+.... ++|+.-|-.+|..++. .|+....-|+....+..-||..|
T Consensus 84 ~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 84 KDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444322 2333333344444444 44444445555555555555544
No 108
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.51 E-value=1.1e+02 Score=28.09 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=28.0
Q ss_pred HhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHhhhhh
Q 026366 48 IGRQKEEFDQYVRIQEGNLIKGVREMKQRHT--YSFLSAIEKEVGRRLH 94 (239)
Q Consensus 48 l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~--r~Ll~~~e~~~~~rlr 94 (239)
|+.--.+.++=|+..++.|+..|.+..+-+. ..++..+-..+.+++.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~ 102 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA 102 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4444445556677888888888888877665 3333333333333333
No 109
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=59.30 E-value=3.7 Score=36.62 Aligned_cols=42 Identities=17% Similarity=0.371 Sum_probs=32.0
Q ss_pred cccccccccccccceEEeC----CCC-cccccchHhcC----CCCCCCccc
Q 026366 188 MQMICRACNIQEVSILLLP----CRH-LCLCKDCEGLI----GVCPVCKAM 229 (239)
Q Consensus 188 ~~~~C~iC~~~~~~vlllP----C~H-lc~C~~C~~~l----~~CPvCr~~ 229 (239)
....|++|.+.+...++.. =|+ +..|..|...- ..||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3559999999998877753 333 45899997642 799999987
No 110
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.93 E-value=92 Score=29.61 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=27.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHH--------HhHHHHhh---hhHHHHHHHHHhHHHHH
Q 026366 95 GKEMEIEVMNCKNKELVEKIKQVSMEV--------QSWHYKAK---YNESVVNALKNNLKQAV 146 (239)
Q Consensus 95 eke~Eie~~~~~n~eLeErl~ql~~E~--------q~Wq~~A~---~~Ea~~~~Lr~~Lqq~~ 146 (239)
....+++.+++..+++..-+++...-+ ..|+.--. -....++.+.+.+..+.
T Consensus 353 ~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~ 415 (551)
T 2b5u_A 353 SRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAA 415 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHHh
Confidence 334467777777777776666655322 36887332 22233444445555444
No 111
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=58.40 E-value=28 Score=22.71 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=20.6
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHhHHHH
Q 026366 91 RRLHGKEMEIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 91 ~rlreke~Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
.++++...++..+..+|..|.+-++....+.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777766665443
No 112
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=57.63 E-value=22 Score=20.70 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
++++.+++--..+|++|+.++..-.|
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777777777788888888776555
No 113
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.91 E-value=88 Score=26.33 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=30.3
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHH
Q 026366 94 HGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLK 143 (239)
Q Consensus 94 reke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lq 143 (239)
.....||+.+.+++..|++.+..+.......+......+..+..++..|.
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345788888888888887777777665555444444444444444443
No 114
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=56.77 E-value=87 Score=29.01 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHhcc
Q 026366 83 SAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQGS 150 (239)
Q Consensus 83 ~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~~~ 150 (239)
..+.+.+.+..+.+ ++.+.+..+..+|.++++.+..+. ..+...|+..+....
T Consensus 55 n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 55 NKIAVEIGKRRKKG-EPVDELLAKSREIVKRIGELENEV--------------EELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHTSC-CCTHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhCC
Confidence 45555555433333 344555566666666666555333 344555666655543
No 115
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=55.74 E-value=40 Score=24.72 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=18.3
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
++|+.+.||.++.+....||-+|+.|.
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567777777777776666666666554
No 116
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=55.11 E-value=57 Score=23.62 Aligned_cols=76 Identities=8% Similarity=0.163 Sum_probs=39.4
Q ss_pred cccchHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHh
Q 026366 38 LSLGDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 38 ~~~~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql 117 (239)
..|-|-|++.|++ =+||..|+..|...|++.+.+... .+......-+.+.-..|+.+...++.|+-.+..+
T Consensus 12 q~LNdRlAsyIdK-----VR~LEqqN~~Le~~i~~l~~~~~~----~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 12 QELNDRFANLIDK-----VRFLEQQNKILLAELEQLKGQGKS----RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666544 247788888888888777665432 2222222222222234444444455555444444
Q ss_pred HHHHH
Q 026366 118 SMEVQ 122 (239)
Q Consensus 118 ~~E~q 122 (239)
..+..
T Consensus 83 ~~~~~ 87 (93)
T 3s4r_A 83 AEDIM 87 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 117
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=54.45 E-value=15 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=14.6
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
+.+.+..++.+..+|.+|+.-+.++.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455566666666666665555543
No 118
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=53.68 E-value=77 Score=24.68 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 101 EVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 101 e~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
+.+.....+|=++|.+++.|-+.+......+.-.++.|+.++..+
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 445666778889999999999999999999999999999998877
No 119
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.64 E-value=49 Score=22.08 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 026366 95 GKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYK 127 (239)
Q Consensus 95 eke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~ 127 (239)
+.+.+.+.+...|.+|...+..+..|...|..+
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466677777777777777777777766553
No 120
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=51.76 E-value=1.4e+02 Score=27.18 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=35.7
Q ss_pred hHHHHHHhhHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHH
Q 026366 42 DNLKLEIGRQKEE--FDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 42 ~~l~~~l~~q~~e--id~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~ 119 (239)
+.+..-+.++..+ +|.++.+-.++ |..+.+ -...++--.++.+.+.+ +. .++.+.+..+..+|.++++.+..
T Consensus 12 ~~~~~~~~~r~~~~~~~~~~~~~~~~-r~~~~~--~~~l~~~~n~~sk~i~~--~~-~~~~~~l~~~~~~~~~~~~~~~~ 85 (421)
T 1ses_A 12 EVFHRAIREKGVALDLEALLALDREV-QELKKR--LQEVQTERNQVAKRVPK--AP-PEEKEALIARGKALGEEAKRLEE 85 (421)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHSSS--SC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHh--hc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555433 67776654221 111111 11222233455555554 22 24566666677777777776654
Q ss_pred HH
Q 026366 120 EV 121 (239)
Q Consensus 120 E~ 121 (239)
+.
T Consensus 86 ~~ 87 (421)
T 1ses_A 86 AL 87 (421)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 121
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=51.15 E-value=40 Score=23.71 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----hhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 68 KGVREMKQRHTYSFLSAIEKEVGR-----RLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 68 ~~l~e~r~r~~r~Ll~~~e~~~~~-----rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
..+|..|+.+....+.++-..+-. +. -|-.-+..+..-+..|++...++..|..
T Consensus 6 N~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~ 64 (80)
T 1nlw_A 6 NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQID 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888776431 11 1233455555555566666665555543
No 122
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=51.02 E-value=80 Score=24.07 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 026366 54 EFDQYVRIQEGNLIKGVREM 73 (239)
Q Consensus 54 eid~~l~~q~e~lr~~l~e~ 73 (239)
.||+ |+..+++||..|+..
T Consensus 16 ~Ie~-Lkreie~lk~ele~l 34 (120)
T 3i00_A 16 LIER-LYREISGLKAQLENM 34 (120)
T ss_dssp HHHH-HHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 3444 455566666666655
No 123
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.78 E-value=2.7e+02 Score=32.41 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhHH
Q 026366 107 NKELVEKIKQVSM 119 (239)
Q Consensus 107 n~eLeErl~ql~~ 119 (239)
..+|++++..+..
T Consensus 2037 L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 2037 ITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 124
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=50.26 E-value=1e+02 Score=25.00 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=23.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHH---hHHHHHHHHHH
Q 026366 44 LKLEIGRQKEEFDQYVRIQEG---NLIKGVREMKQ 75 (239)
Q Consensus 44 l~~~l~~q~~eid~~l~~q~e---~lr~~l~e~r~ 75 (239)
=..+|++|-.|+...++.+.| |+|+...|..+
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k 41 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSK 41 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 346789999999999988765 78877777754
No 125
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=49.89 E-value=62 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=19.0
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHHH
Q 026366 89 VGRRLHGKEMEIEVMNCKNKELVEKIK 115 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n~eLeErl~ 115 (239)
...+|++|.+||++++.-.-.|..++-
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLi 34 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLE 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899888776666655443
No 126
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.41 E-value=20 Score=21.50 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=11.1
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHh
Q 026366 94 HGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 94 reke~Eie~~~~~n~eLeErl~ql 117 (239)
.+.+..++.+..+|.+|+..+.++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 334444444445555555444443
No 127
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=48.98 E-value=17 Score=21.80 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=14.6
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHh
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql 117 (239)
|+.+.+...|.+..+|.+|+.-+.++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44455556666666666666555544
No 128
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=48.51 E-value=19 Score=21.56 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=14.6
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
|+.+.+..+|.+..+|.+|+..+.++.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444555555666666666665555443
No 129
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=48.30 E-value=1.5e+02 Score=27.77 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=33.5
Q ss_pred hHHHHHHhhHHH---HHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHH
Q 026366 42 DNLKLEIGRQKE---EFDQYVRIQEG--NLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 42 ~~l~~~l~~q~~---eid~~l~~q~e--~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~q 116 (239)
+.+..-+.++.. .+|.++.+-.+ .+...+++.| +-..++.+.+....+.++ +++.+..+..+|.++++.
T Consensus 16 ~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~-----~~rn~~sk~i~~~k~~~~-~~~~l~~~~~~l~~~i~~ 89 (485)
T 3qne_A 16 EIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHN-----KKLNSVQKEIGKRFKAKE-DAKDLIAEKEKLSNEKKE 89 (485)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHH
Confidence 334444444432 27888766433 2222233332 223345555544333332 344455555566666665
Q ss_pred hHHH
Q 026366 117 VSME 120 (239)
Q Consensus 117 l~~E 120 (239)
+..+
T Consensus 90 le~~ 93 (485)
T 3qne_A 90 IIEK 93 (485)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5533
No 130
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=47.84 E-value=19 Score=21.49 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=10.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 026366 95 GKEMEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 95 eke~Eie~~~~~n~eLeErl~q 116 (239)
+.+..+|.+..+|.+|+..+.+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444445555555444433
No 131
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=47.43 E-value=1.8e+02 Score=29.98 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 026366 98 MEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~ 118 (239)
++++++.+...+|+++..++.
T Consensus 998 ~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 132
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.42 E-value=19 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=12.7
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHh
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql 117 (239)
+.+.+..+|.+..++.+|+..+.++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344445555555555555544443
No 133
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.69 E-value=60 Score=21.37 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
+.+.+.+...|.+|...+..+..|...|..
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777888888877777776654
No 134
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.23 E-value=64 Score=24.61 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 107 NKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 107 n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
...|+.+|.+|.+|...-+......-.....|+..++.+
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433322222222334455555544
No 135
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.82 E-value=16 Score=24.57 Aligned_cols=36 Identities=25% Similarity=0.776 Sum_probs=23.8
Q ss_pred ccccccccccceEEeC---CCCcccccchHhc----CCCCCCCc
Q 026366 191 ICRACNIQEVSILLLP---CRHLCLCKDCEGL----IGVCPVCK 227 (239)
Q Consensus 191 ~C~iC~~~~~~vlllP---C~Hlc~C~~C~~~----l~~CPvCr 227 (239)
.|..|.......-.+- |++. +|.+|... +..||.|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCCC
Confidence 5777877664432222 4444 89999875 48999983
No 136
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=44.78 E-value=22 Score=21.29 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=10.7
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~q 116 (239)
+.+.+..++.+..+|.+|+..+.+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 333444444444445554444333
No 137
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.52 E-value=77 Score=29.02 Aligned_cols=71 Identities=21% Similarity=0.336 Sum_probs=32.0
Q ss_pred hHHHHHHhhHHHH----HHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHH
Q 026366 42 DNLKLEIGRQKEE----FDQYVRIQEGN--LIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIK 115 (239)
Q Consensus 42 ~~l~~~l~~q~~e----id~~l~~q~e~--lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ 115 (239)
+.+..-+.++..+ +|.++.+-.++ +...+++ .++--.++.+.+.+..+.+ ++.+.+..+..+|.++++
T Consensus 12 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~-----l~~~~n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~~~ 85 (425)
T 2dq3_A 12 DYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEA-----LRSERNKLSKEIGKLKREG-KDTTEIQNRVKELKEEID 85 (425)
T ss_dssp HHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTTGGGSSC-SCTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhcC-ccHHHHHHHHHHHHHHHH
Confidence 3444445544433 67666554322 1222222 2333345666665533333 233444445555555555
Q ss_pred HhH
Q 026366 116 QVS 118 (239)
Q Consensus 116 ql~ 118 (239)
.+.
T Consensus 86 ~~~ 88 (425)
T 2dq3_A 86 RLE 88 (425)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 138
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=44.47 E-value=1.1e+02 Score=24.12 Aligned_cols=86 Identities=8% Similarity=0.185 Sum_probs=44.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHHHHHHHHHHHHHHHHHhHHHHHhH------HHHhhhhH
Q 026366 60 RIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLH-GKEMEIEVMNCKNKELVEKIKQVSMEVQSW------HYKAKYNE 132 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlr-eke~Eie~~~~~n~eLeErl~ql~~E~q~W------q~~A~~~E 132 (239)
+...++++..+.+..+.|.+.|.+.-.. ..++ +.+.-+..+++....+..+|+.+..++..- ....+...
T Consensus 49 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~---~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 125 (180)
T 1s94_A 49 RAMIDKISDNVDAVKKKHSDILSAPQTD---DQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRK 125 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 4445566666777777777665532211 1111 122234445666667777777777654211 11112334
Q ss_pred HHHHHHHHhHHHHHHh
Q 026366 133 SVVNALKNNLKQAVAQ 148 (239)
Q Consensus 133 a~~~~Lr~~Lqq~~~~ 148 (239)
+....|..++..++..
T Consensus 126 ~q~~~L~~kf~~~m~~ 141 (180)
T 1s94_A 126 TQYSTISRKFVEVMSD 141 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777777777543
No 139
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.70 E-value=1.4e+02 Score=24.89 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 58 YVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 58 ~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
|-+.-.|+-|.+|.++-. ....|-..|+. +++||..++..|.+|.+.+..+.
T Consensus 98 YWk~lAE~RR~AL~eaLe-EN~~Lh~~ie~--------l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 98 YWKEVAEKRRKALYEALK-ENEKLHKEIEQ--------KDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888844 44445444443 67788888888888876665543
No 140
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.64 E-value=89 Score=22.49 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq 125 (239)
+++.+...|..|..+|.+|..|.+.++
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666665443
No 141
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.25 E-value=31 Score=22.92 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHhhh
Q 026366 105 CKNKELVEKIKQVSMEVQSWHYKAKY 130 (239)
Q Consensus 105 ~~n~eLeErl~ql~~E~q~Wq~~A~~ 130 (239)
....+|+.++..+..++..+......
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999988887654433
No 142
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=42.58 E-value=59 Score=29.81 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHH
Q 026366 96 KEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVA 147 (239)
Q Consensus 96 ke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~ 147 (239)
.+.|++.+..+..+|++.++++..|...-...-...+..-..|.+.++.+..
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777777777777777777777766655555555666778888887743
No 143
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=42.26 E-value=53 Score=24.61 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 103 MNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 103 ~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
+.....+|=++|.+++.|-+.+......++-.++.|+.++.++
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 4556678889999999999999999999999999999998876
No 144
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=42.19 E-value=9.5 Score=30.86 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=13.1
Q ss_pred CCCCCCcccccceEEE
Q 026366 221 GVCPVCKAMRTASVEV 236 (239)
Q Consensus 221 ~~CPvCr~~i~~~v~v 236 (239)
..||+|..+...+..+
T Consensus 154 ~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVVF 169 (170)
T ss_dssp SBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCHHHceec
Confidence 5999999998877654
No 145
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=42.18 E-value=93 Score=24.48 Aligned_cols=54 Identities=4% Similarity=0.032 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 64 GNLIKGVREMKQRHTYSFLSAIEKEV-GRRLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 64 e~lr~~l~e~r~r~~r~Ll~~~e~~~-~~rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
++|+..|+..+.-.--.++.+++.+. ..-|+| +.|...++++..+++.|++.+.
T Consensus 12 ~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsE-NaeY~aak~~q~~~e~rI~~L~ 66 (158)
T 2p4v_A 12 EKLKQELNYLWREERPEVTKKVTWAASLGDRSE-NADYQYNKKRLREIDRRVRYLT 66 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccc-chhHHHHHHHHHHHHHHHHHHH
Confidence 34444444443322333334443321 223444 3455555666666666665555
No 146
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=42.16 E-value=56 Score=24.45 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 102 VMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 102 ~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
.+.....+|=++|.+++.|-+.+......++-.++.|+.++.++
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34556678889999999999999999999999999999887766
No 147
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=42.14 E-value=1.1e+02 Score=23.01 Aligned_cols=78 Identities=13% Similarity=0.264 Sum_probs=38.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHH
Q 026366 58 YVRIQEGNLIKGVREMKQRHTYSF--LSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVV 135 (239)
Q Consensus 58 ~l~~q~e~lr~~l~e~r~r~~r~L--l~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~ 135 (239)
-|.++.+.++..+++-|.+.-..+ -..+|..+. ..-..++.+.-...+|+.++..|..|..-.+ +-+|..+
T Consensus 38 ~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~----~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK---k~heeEl 110 (119)
T 3ol1_A 38 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQ----SFRQDVDNASLARLDLERKVESLQEEIAFLK---KLHEEEI 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HhhhcccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 345667777777777766543222 112222111 1111333444445677777777776665433 2334455
Q ss_pred HHHHHhH
Q 026366 136 NALKNNL 142 (239)
Q Consensus 136 ~~Lr~~L 142 (239)
..|++++
T Consensus 111 ~eLq~qi 117 (119)
T 3ol1_A 111 QELQAQI 117 (119)
T ss_dssp HHHHSCC
T ss_pred HHHHHHh
Confidence 5555443
No 148
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.01 E-value=1.3e+02 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 98 MEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
.|+..++-++..++++++.+..|+.
T Consensus 103 DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 103 AALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888899999999999999999994
No 149
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=40.72 E-value=1.5e+02 Score=24.25 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 101 EVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 101 e~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
+.+.....+|=++|.++..|-+.+......+.-.++.|+.++..+
T Consensus 61 ~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 345666778889999999999999999999999999999988877
No 150
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=40.26 E-value=28 Score=20.84 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=12.5
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHh
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql 117 (239)
|+.+.+..+|.+..+|.+|+..+.++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 34444445555555555555444443
No 151
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=40.21 E-value=67 Score=27.29 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~ 119 (239)
.+++++.||.+|++++..+..
T Consensus 73 Q~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 73 QVRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466667778888888877763
No 152
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=40.21 E-value=1.1e+02 Score=22.56 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=36.8
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAV 146 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~ 146 (239)
|++++.+...-++-.+.|.+-++.-.+-.+.|+....+-+..+..|+..|+.+.
T Consensus 34 l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 34 LLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666667777777777777777777777663
No 153
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.54 E-value=3.1e+02 Score=31.96 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=6.6
Q ss_pred HHHHhHHHHHHHH
Q 026366 61 IQEGNLIKGVREM 73 (239)
Q Consensus 61 ~q~e~lr~~l~e~ 73 (239)
.+.+.|+..|+++
T Consensus 1934 ~~V~~l~~~L~~~ 1946 (3245)
T 3vkg_A 1934 AQVKDLQVSLAQK 1946 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 154
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.54 E-value=71 Score=22.33 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=10.8
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 93 LHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 93 lreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
|++|++-|+.+.++..+.++.++.|.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 155
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=37.88 E-value=1.2e+02 Score=22.24 Aligned_cols=85 Identities=13% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhH------HHHhhhhH
Q 026366 60 RIQEGNLIKGVREMKQRHTYSFLSAI-EKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSW------HYKAKYNE 132 (239)
Q Consensus 60 ~~q~e~lr~~l~e~r~r~~r~Ll~~~-e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~W------q~~A~~~E 132 (239)
+...++++..+.+..+.|.+.|-+.- ++.+.++| +.-+..+++....+..+|+.+..++..- ....+...
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l---~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 94 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEEL---EELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK 94 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 34455677777777777776654211 11122222 3344455666777777888777665421 11224456
Q ss_pred HHHHHHHHhHHHHHH
Q 026366 133 SVVNALKNNLKQAVA 147 (239)
Q Consensus 133 a~~~~Lr~~Lqq~~~ 147 (239)
+.+..|..++..+..
T Consensus 95 ~q~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 95 TQHSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677788888877754
No 156
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=37.36 E-value=60 Score=18.73 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~ 121 (239)
|+..+...|-.|+..+.|+..|+
T Consensus 9 evaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 9 EVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHhc
Confidence 44445555556666666665543
No 157
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=37.13 E-value=37 Score=20.35 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=12.8
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHh
Q 026366 92 RLHGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 92 rlreke~Eie~~~~~n~eLeErl~ql 117 (239)
|+.+.+..+|.+..++.+|+..+.++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444445555555555555444443
No 158
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=36.69 E-value=1.4e+02 Score=23.25 Aligned_cols=53 Identities=6% Similarity=0.127 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 64 GNLIKGVREMKQRHTYSFLSAIEKEVG-RRLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 64 e~lr~~l~e~r~r~~r~Ll~~~e~~~~-~rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
++|+..|++ +......++.++..+.. .-++| +.+...++.+...++.|++.+.
T Consensus 13 ~~L~~el~~-~~~~r~~~~~~i~~A~~~GDlsE-naey~aak~~q~~~e~ri~~L~ 66 (156)
T 2f23_A 13 ERLMQQLER-ERERLQEATKILQELMESSDDYD-DSGLEAAKQEKARIEARIDSLE 66 (156)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHTCSCCSC-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCchh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555 33333444444544322 22333 3455555555555665555554
No 159
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.44 E-value=2.5e+02 Score=25.67 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=47.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHH---
Q 026366 43 NLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSM--- 119 (239)
Q Consensus 43 ~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~--- 119 (239)
+|+--|.++..-||.=|+.- |.+-..|+.. ......|+.++......+-..+..-++.+.++...+.+.+.++..
T Consensus 24 ~i~d~L~k~e~~V~~~l~~L-E~~l~elsn~-ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~ 101 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEI-EGLLQQATNS-TGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTIL 101 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 35555666666666644433 4444455444 445566676776654333222222233334444444444444433
Q ss_pred ----HHHhHHHHhhhhHHHHHHHHHhHHHH
Q 026366 120 ----EVQSWHYKAKYNESVVNALKNNLKQA 145 (239)
Q Consensus 120 ----E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~ 145 (239)
..+.-+.+-..++..+..|+..+.++
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 102 AHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333333334444444444444443
No 160
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=36.26 E-value=13 Score=27.02 Aligned_cols=31 Identities=16% Similarity=0.469 Sum_probs=24.6
Q ss_pred ccccccccccccceEEeCCC---CcccccchHhc
Q 026366 189 QMICRACNIQEVSILLLPCR---HLCLCKDCEGL 219 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~---Hlc~C~~C~~~ 219 (239)
...|.+|.++--+.-|+-|- |--+|..|...
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 34899999999998888885 33389999763
No 161
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=35.67 E-value=17 Score=23.71 Aligned_cols=15 Identities=33% Similarity=0.837 Sum_probs=9.6
Q ss_pred CCCCCcccccceEEE
Q 026366 222 VCPVCKAMRTASVEV 236 (239)
Q Consensus 222 ~CPvCr~~i~~~v~v 236 (239)
.||+|..++..+..+
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 577777776666543
No 162
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=35.44 E-value=1.1e+02 Score=21.38 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSM 119 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~ 119 (239)
++..+..+...|+..+.++..
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~ 47 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKE 47 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455554444443
No 163
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.28 E-value=74 Score=20.70 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHh
Q 026366 98 MEIEVMNCKNKELVEKIKQVSMEVQS 123 (239)
Q Consensus 98 ~Eie~~~~~n~eLeErl~ql~~E~q~ 123 (239)
.+++.++..|.+|..++..|..+.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888877766653
No 164
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=35.15 E-value=1.3e+02 Score=23.61 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhcchHHHHHHHHHHHHHHHHHHHhH
Q 026366 64 GNLIKGVREMKQRHTYSFLSAIEKE-VGRRLHGKEMEIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 64 e~lr~~l~e~r~r~~r~Ll~~~e~~-~~~rlreke~Eie~~~~~n~eLeErl~ql~ 118 (239)
++|+..|+..+.-.--.++.+++.+ ...-|.| +.|-..++++...++.|++.+.
T Consensus 12 ~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsE-NaeY~aak~~q~~~e~ri~~Le 66 (158)
T 1grj_A 12 EKLREELDFLKSVRRPEIIAAIAEAREHGDLKE-NAEYHAAREQQGFCEGRIKDIE 66 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGG-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHhhHHHHHhcccccc-cchhhhHHHHHHHHHHHHHHHH
Confidence 4455555555443333444444333 1223444 3455555555666666666555
No 165
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=34.89 E-value=18 Score=30.65 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=28.7
Q ss_pred ccccccccccccceEEeC-CCCcccccchHhc------CCCCCCCcccccc
Q 026366 189 QMICRACNIQEVSILLLP-CRHLCLCKDCEGL------IGVCPVCKAMRTA 232 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllP-C~Hlc~C~~C~~~------l~~CPvCr~~i~~ 232 (239)
...|.+|++-..--..-| |+|. +=..|... -..||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 458999998777655544 5554 44556543 2499999987654
No 166
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=34.73 E-value=15 Score=24.32 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=8.2
Q ss_pred CCCCCcccccceEE
Q 026366 222 VCPVCKAMRTASVE 235 (239)
Q Consensus 222 ~CPvCr~~i~~~v~ 235 (239)
.||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 38 VCPLCGVGKDEFEE 51 (54)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHceE
Confidence 56666666555543
No 167
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.71 E-value=1.5e+02 Score=22.60 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 026366 99 EIEVMNCKNKELV 111 (239)
Q Consensus 99 Eie~~~~~n~eLe 111 (239)
||..++.+..+..
T Consensus 79 EI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 79 EITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 168
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.71 E-value=1e+02 Score=20.54 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhH
Q 026366 106 KNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNL 142 (239)
Q Consensus 106 ~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~L 142 (239)
+..+|+.++..+..++.........-+..+..|+.-|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777766655555555555555443
No 169
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.44 E-value=1.3e+02 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=19.5
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHh
Q 026366 91 RRLHGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 91 ~rlreke~Eie~~~~~n~eLeErl~ql 117 (239)
..|..|+.||+.+.++...|++..+..
T Consensus 34 ~ql~~k~~ei~~L~~ql~sl~~~~~~~ 60 (190)
T 4emc_A 34 EKLDTKATEIKQLQKQIDSLNAQVKEL 60 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345567778888888888888777643
No 170
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.30 E-value=84 Score=24.24 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=6.8
Q ss_pred HHHHHHhHHHH
Q 026366 135 VNALKNNLKQA 145 (239)
Q Consensus 135 ~~~Lr~~Lqq~ 145 (239)
+..|+.+|+.+
T Consensus 36 i~kL~~~l~~~ 46 (134)
T 1zbd_B 36 IGRLVDRLETM 46 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44566666665
No 171
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=34.12 E-value=16 Score=23.89 Aligned_cols=13 Identities=46% Similarity=0.882 Sum_probs=7.4
Q ss_pred CCCCCcccccceE
Q 026366 222 VCPVCKAMRTASV 234 (239)
Q Consensus 222 ~CPvCr~~i~~~v 234 (239)
.||+|...+..+.
T Consensus 38 ~CP~Cg~~K~~F~ 50 (52)
T 1e8j_A 38 ACPVCGASKDAFE 50 (52)
T ss_dssp CCSSSCCCTTSCE
T ss_pred cCCCCCCcHHHcE
Confidence 4666666555544
No 172
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.88 E-value=17 Score=23.99 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=10.4
Q ss_pred CCCCCcccccceEEE
Q 026366 222 VCPVCKAMRTASVEV 236 (239)
Q Consensus 222 ~CPvCr~~i~~~v~v 236 (239)
.||+|..++..+..+
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 678887777766553
No 173
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=33.74 E-value=1.8e+02 Score=23.13 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=19.6
Q ss_pred ccchHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH
Q 026366 39 SLGDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREM 73 (239)
Q Consensus 39 ~~~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~ 73 (239)
++.+++...|.+...++=.-|.-+.|.+|..|+-.
T Consensus 67 p~~~e~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~ 101 (185)
T 3r2p_A 67 PVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPY 101 (185)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34566766666665555445555555555544444
No 174
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=33.56 E-value=87 Score=29.89 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=31.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHH
Q 026366 61 IQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVN 136 (239)
Q Consensus 61 ~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~ 136 (239)
+..++|+..-.|-|.|. .+|+.-..+-++ .-+.+-+...+|++|++++..|...++..-...+.+|.
T Consensus 300 ~e~qqm~~~a~e~~~~~------~~e~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLAK------QAQREKLQLEIA---ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMIL 366 (575)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHTTCCSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55667776665554432 344432222222 12222333456666666666666655554444443333
No 175
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=33.38 E-value=22 Score=23.51 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=7.4
Q ss_pred cccccccccc
Q 026366 189 QMICRACNIQ 198 (239)
Q Consensus 189 ~~~C~iC~~~ 198 (239)
...|.+|...
T Consensus 11 ~~~C~vC~~~ 20 (61)
T 2l5u_A 11 QDYCEVCQQG 20 (61)
T ss_dssp CSSCTTTSCC
T ss_pred CCCCccCCCC
Confidence 4479999874
No 176
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=32.57 E-value=3e+02 Score=25.31 Aligned_cols=105 Identities=18% Similarity=0.120 Sum_probs=65.0
Q ss_pred chHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH-HHHHH------
Q 026366 41 GDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNK-ELVEK------ 113 (239)
Q Consensus 41 ~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~-eLeEr------ 113 (239)
+=.|+.-|-+|...||.=|+.-...|.. | +........+|..|......+-+.+..-|+-+.++.. .|+|.
T Consensus 22 tCgl~d~L~kye~~V~~~l~~L~~~l~~-i-sn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~ 99 (411)
T 3ghg_C 22 TCGIADFLSTYQTKVDKDLQSLEDILHQ-V-ENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEAS 99 (411)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhccchhhHHHHHHHHHHH-H-HhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3447777888888888866555444432 2 3346667888999998887777776665666666655 33333
Q ss_pred HHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHH
Q 026366 114 IKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVA 147 (239)
Q Consensus 114 l~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~ 147 (239)
+.......+.-+..+..+...+..|+..+.++..
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 100 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223345556666677777777777666543
No 177
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=32.44 E-value=22 Score=25.53 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=13.2
Q ss_pred CCCCCcccccceEEE
Q 026366 222 VCPVCKAMRTASVEV 236 (239)
Q Consensus 222 ~CPvCr~~i~~~v~v 236 (239)
.||+|..++..+..+
T Consensus 62 ~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMV 76 (81)
T ss_dssp CCTTTCCCGGGEEEE
T ss_pred cCCCCCCCHHHcEEc
Confidence 799999999888775
No 178
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=32.43 E-value=17 Score=23.18 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=10.7
Q ss_pred CCCCCcccccceEE
Q 026366 222 VCPVCKAMRTASVE 235 (239)
Q Consensus 222 ~CPvCr~~i~~~v~ 235 (239)
.||+|..++..+..
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 78999888776653
No 179
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=32.39 E-value=2.3e+02 Score=29.30 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 026366 99 EIEVMNCKNKELVEKIKQVS 118 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~ 118 (239)
+++++..+..+|++++..+.
T Consensus 914 ~l~~l~~~~~~Le~~l~ele 933 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEME 933 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443333
No 180
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.53 E-value=1.3e+02 Score=21.03 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq 125 (239)
.++.+...|..|..+|.+|..|...++
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667766666666665554
No 181
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=31.51 E-value=47 Score=25.10 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=37.7
Q ss_pred HhhhhhcchHHHHHHHHHH-HHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHH
Q 026366 89 VGRRLHGKEMEIEVMNCKN-KELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQ 144 (239)
Q Consensus 89 ~~~rlreke~Eie~~~~~n-~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq 144 (239)
++++|--.|.+|+.+.-.+ ..+.|++-++- ..|...--..+|.++.|-..|..
T Consensus 31 ~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmL---r~W~~~~G~~~Atv~~L~~aLr~ 84 (112)
T 1ich_A 31 FVKRLGLSDHEIDRLELQNGRCLREAQYSML---ATWRRRTPRREATLELLGRVLRD 84 (112)
T ss_dssp HHHHHTCCHHHHHHHHHHCCSCHHHHHHHHH---HHHHHHSCCSSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHCcCChHHHHHHHH---HHHHHhcCCCCCcHHHHHHHHHH
Confidence 6678888889999998777 46888776665 68998765455666665555543
No 182
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.50 E-value=2.9e+02 Score=25.78 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=29.8
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHh
Q 026366 42 DNLKLEIGRQKEEFDQYVRIQEGNLIKGVREM--KQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 42 ~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~--r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql 117 (239)
=.|+..|-+++.-||-=|+. |...|++. .-.-...++..|......+-.++..-++.+.....+|++....+
T Consensus 85 C~l~D~L~k~q~~V~~~Lqe----Le~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 85 CELQTTLLKQEKTVKPVLRD----LKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhhhHhHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 34555555555555544433 33333332 12222334444444333333333333333444455555554444
No 183
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=30.87 E-value=37 Score=22.40 Aligned_cols=33 Identities=27% Similarity=0.675 Sum_probs=20.2
Q ss_pred ccccccccccccceEEeCCCCcccccchHhcC----------------CCCCCCcccc
Q 026366 189 QMICRACNIQEVSILLLPCRHLCLCKDCEGLI----------------GVCPVCKAMR 230 (239)
Q Consensus 189 ~~~C~iC~~~~~~vlllPC~Hlc~C~~C~~~l----------------~~CPvCr~~i 230 (239)
...|.+|... +++.+|..|.... ..||.|....
T Consensus 9 ~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDG---------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCC---------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCcCCCCCCC---------CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3479999863 2444666664431 4688887653
No 184
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.46 E-value=1.2e+02 Score=20.20 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhHHHHHh
Q 026366 106 KNKELVEKIKQVSMEVQS 123 (239)
Q Consensus 106 ~n~eLeErl~ql~~E~q~ 123 (239)
+..+|+.++..|..|+..
T Consensus 31 ~~~~Le~~v~~L~~eN~~ 48 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYH 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666555553
No 185
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.53 E-value=1.4e+02 Score=21.43 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhH
Q 026366 104 NCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNL 142 (239)
Q Consensus 104 ~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~L 142 (239)
+.+..+++.++..|..|+..-+.....-+..+..|+.-|
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888999988876654444444444444333
No 186
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.82 E-value=2.5e+02 Score=23.37 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=6.5
Q ss_pred cccccccccc
Q 026366 190 MICRACNIQE 199 (239)
Q Consensus 190 ~~C~iC~~~~ 199 (239)
..|..|+-.-
T Consensus 199 ~~C~GC~~~l 208 (256)
T 3na7_A 199 QACGGCFIRL 208 (256)
T ss_dssp TBCTTTCCBC
T ss_pred CccCCCCeee
Confidence 3777777643
No 187
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=27.73 E-value=22 Score=24.64 Aligned_cols=15 Identities=20% Similarity=0.789 Sum_probs=11.4
Q ss_pred CCCCCcccccceEEE
Q 026366 222 VCPVCKAMRTASVEV 236 (239)
Q Consensus 222 ~CPvCr~~i~~~v~v 236 (239)
.||+|..++..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 688888887777654
No 188
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.71 E-value=98 Score=27.16 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=42.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 026366 58 YVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQ 122 (239)
Q Consensus 58 ~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q 122 (239)
|+..-.+-++.-++.. -.+-.+.+.+...+.+....++.|++.+..++.+|++.+..+..+..
T Consensus 147 ~~~y~~~~Y~~fl~~~--d~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e 209 (315)
T 2ve7_A 147 FLDYTIKCYESFMSGA--DSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERS 209 (315)
T ss_dssp HHHHHHHHHHHHHHTC--SCCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555532 12234444555556666677788999999999999999999976654
No 189
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=27.71 E-value=1e+02 Score=20.12 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 026366 59 VRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVM 103 (239)
Q Consensus 59 l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~ 103 (239)
|..|..-++..|+++|+.---.=|..++. -||+.+.||++.
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~----NLrEL~~ei~~~ 47 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQE----NLRQLQDEYDQQ 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHH----HHHHHHHHHHHH
Confidence 34566667777777766443333444443 345555555444
No 190
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.67 E-value=1.3e+02 Score=19.63 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHHHHHhHHH
Q 026366 106 KNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 106 ~n~eLeErl~ql~~E~q~Wq~ 126 (239)
...+|+.++..+..++..-+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777765543
No 191
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=27.48 E-value=84 Score=21.76 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=18.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 026366 62 QEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVM 103 (239)
Q Consensus 62 q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~ 103 (239)
|..-++..|+++|+.---.=|..+|. -|||.+.||+++
T Consensus 28 Q~~~I~~yI~qAk~~~r~DEV~tLe~----NLrEL~~ei~~~ 65 (69)
T 1z0k_B 28 QIHNITSFIRQAKAAGRMDEVRTLQE----NLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHH----HHHHHHHHHHHH
Confidence 34445666666655433333344443 355555555544
No 192
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.48 E-value=1.1e+02 Score=24.67 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=4.3
Q ss_pred hHHHHHHHHH
Q 026366 50 RQKEEFDQYV 59 (239)
Q Consensus 50 ~q~~eid~~l 59 (239)
.|+.+|+.+.
T Consensus 71 EQq~ql~~I~ 80 (175)
T 3lay_A 71 EQQATAQKIY 80 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 193
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=26.95 E-value=18 Score=29.56 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=12.2
Q ss_pred CCCCCCcccccceEE
Q 026366 221 GVCPVCKAMRTASVE 235 (239)
Q Consensus 221 ~~CPvCr~~i~~~v~ 235 (239)
..||+|..+...+..
T Consensus 172 ~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 172 ELCPACAHPKAHFEL 186 (191)
T ss_dssp SBCTTTCCBGGGEEE
T ss_pred CCCCCCcCCHHHHHh
Confidence 499999999877654
No 194
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.45 E-value=1.9e+02 Score=23.75 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=19.9
Q ss_pred HHHHhhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 026366 86 EKEVGRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 86 e~~~~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
.+.+..+|+..+..|+++.-.|..|.+.+.....|...-+.
T Consensus 8 K~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777766666665554
No 195
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.41 E-value=1.7e+02 Score=20.63 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq 125 (239)
.++.+..+|.+|+++|+.+......-+
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 455556689999999998887655433
No 196
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=26.07 E-value=93 Score=20.91 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=25.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 026366 58 YVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVM 103 (239)
Q Consensus 58 ~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~ 103 (239)
.|..|..-++..|.++|+.----=|..++. -||+.+.|+.+.
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~----NLrEL~~ei~~~ 54 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTE----NLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHH----HHHHHHHHHHHH
Confidence 566777888888888876544344444443 355555555544
No 197
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.53 E-value=1.5e+02 Score=19.58 Aligned_cols=33 Identities=12% Similarity=-0.000 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHH
Q 026366 106 KNKELVEKIKQVSMEVQSWHYKAKYNESVVNAL 138 (239)
Q Consensus 106 ~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~L 138 (239)
.+.+|+..+..+..++...+.....-...+..|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888887765443333333333
No 198
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.38 E-value=3.8e+02 Score=25.14 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 026366 54 EFDQYVRIQEGNLIKGVREM 73 (239)
Q Consensus 54 eid~~l~~q~e~lr~~l~e~ 73 (239)
.++.|++.-.+.||..+...
T Consensus 83 ~s~~y~~~~~~~lk~~~~q~ 102 (491)
T 1m1j_A 83 TSNRVIVETINILKPGLEGA 102 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555544443
No 199
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.35 E-value=1.4e+02 Score=19.35 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq 125 (239)
.++.+..+...|..+|.+|..+..+-+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666665544433
No 200
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.85 E-value=1.7e+02 Score=20.05 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 026366 103 MNCKNKELVEKIKQVSMEV 121 (239)
Q Consensus 103 ~~~~n~eLeErl~ql~~E~ 121 (239)
+...|..|.+.+..|..|+
T Consensus 48 l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 201
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=24.77 E-value=26 Score=32.03 Aligned_cols=40 Identities=25% Similarity=0.459 Sum_probs=24.2
Q ss_pred cccccccccccc-eEEeCCCCcccccchHhc--------CCCCCCCcccc
Q 026366 190 MICRACNIQEVS-ILLLPCRHLCLCKDCEGL--------IGVCPVCKAMR 230 (239)
Q Consensus 190 ~~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~--------l~~CPvCr~~i 230 (239)
..|++-+.+-.. +=-..|.|+ -|.+-... ...||+|...+
T Consensus 250 L~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCccc
Confidence 367665554332 333568887 35554432 38999998876
No 202
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=24.17 E-value=60 Score=28.88 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026366 97 EMEIEVMNCKNKELVEKIKQ 116 (239)
Q Consensus 97 e~Eie~~~~~n~eLeErl~q 116 (239)
...++.+..++..|+..+.+
T Consensus 34 q~~le~L~~KI~~LE~~v~~ 53 (323)
T 1lwu_B 34 KSVLEHLRAKMQRMEEAIKT 53 (323)
T ss_dssp HTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555544
No 203
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.09 E-value=1.8e+02 Score=20.14 Aligned_cols=25 Identities=12% Similarity=0.399 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHh
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQS 123 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~ 123 (239)
.++.+-.+|.+|+++|+.+......
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444556888999999888765543
No 204
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.73 E-value=1.9e+02 Score=20.15 Aligned_cols=44 Identities=5% Similarity=-0.073 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHhc
Q 026366 106 KNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQG 149 (239)
Q Consensus 106 ~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~~ 149 (239)
|..+||.++.....-...-...--...-.+..|+..|..+....
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333333445677777777765544
No 205
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.67 E-value=1.4e+02 Score=21.01 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHHHHHhHHH
Q 026366 105 CKNKELVEKIKQVSMEVQSWHY 126 (239)
Q Consensus 105 ~~n~eLeErl~ql~~E~q~Wq~ 126 (239)
.+..+++.++..|..|+..-+.
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~ 57 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQK 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888886654
No 206
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=23.58 E-value=28 Score=31.69 Aligned_cols=41 Identities=24% Similarity=0.571 Sum_probs=24.9
Q ss_pred cccccccccccc-eEEeCCCCcccccchHhc--------CCCCCCCccccc
Q 026366 190 MICRACNIQEVS-ILLLPCRHLCLCKDCEGL--------IGVCPVCKAMRT 231 (239)
Q Consensus 190 ~~C~iC~~~~~~-vlllPC~Hlc~C~~C~~~--------l~~CPvCr~~i~ 231 (239)
..|++-+.+-.. +=...|.|+ -|.+-... ...||+|...+.
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 356665543332 333568888 35555443 389999998764
No 207
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.10 E-value=81 Score=20.62 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026366 99 EIEVMNCKNKELVEKIKQV 117 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql 117 (239)
+++.+.+.|.+|++++..+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 208
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.97 E-value=96 Score=26.72 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=31.6
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhhhHHHHHHHHHhHHHHHHh
Q 026366 90 GRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKYNESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 90 ~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~~Ea~~~~Lr~~Lqq~~~~ 148 (239)
..|++++..+++.+..+|.-|.+-++.+..|. ..|+..|+++...
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El--------------~~LkeElerL~sP 97 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQL--------------LALREEVDRLGQP 97 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH--------------HHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhcCC
Confidence 34566777778888888888887777776554 4677788876543
No 209
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.59 E-value=3.1e+02 Score=22.23 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=26.5
Q ss_pred chHHHHHHhhHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026366 41 GDNLKLEIGRQKEEFDQYVRI----------QEGNLIKGVREMKQRHTYSFLSAIEK 87 (239)
Q Consensus 41 ~~~l~~~l~~q~~eid~~l~~----------q~e~lr~~l~e~r~r~~r~Ll~~~e~ 87 (239)
-++|...+.-...+..+|+.+ +..++-....+.-+.|...+...+..
T Consensus 30 ~~nL~~a~~gE~~a~~~Y~~~A~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~ 86 (202)
T 1yuz_A 30 LENLKAAIAGETGAHAKYTAFAKAAREQGYEQIARLFEATAAAELIHIGLEYALVAE 86 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666666666521 23344444445556666666666553
No 210
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.15 E-value=4.2e+02 Score=23.61 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHH---hhhhhcchHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhh
Q 026366 55 FDQYVRIQEGNLIKGVREMKQR-HTYSFLSAIEKEV---GRRLHGKEMEIEVMNCKNKELVEKIKQVSMEVQSWHYKAKY 130 (239)
Q Consensus 55 id~~l~~q~e~lr~~l~e~r~r-~~r~Ll~~~e~~~---~~rlreke~Eie~~~~~n~eLeErl~ql~~E~q~Wq~~A~~ 130 (239)
.+..|..-.+++...|++.+.. +.+.....+++++ .+.+-+.+......+.-.+.|.+-+.. +..--+.+.++
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 447 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDA---EKAQGQKKVEE 447 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHH---HHHHHHHHHHH
Confidence 3444444445555555544322 2233333333332 222333344444445555555554433 22222246677
Q ss_pred hHHHHHHHHHhHHHHHHh
Q 026366 131 NESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 131 ~Ea~~~~Lr~~Lqq~~~~ 148 (239)
.|+.+..|..+|+...++
T Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 448 LEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888888777766443
No 211
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.22 E-value=38 Score=24.54 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=12.2
Q ss_pred CCCCCcccccceEEE
Q 026366 222 VCPVCKAMRTASVEV 236 (239)
Q Consensus 222 ~CPvCr~~i~~~v~v 236 (239)
.||+|..++..+..+
T Consensus 70 ~CPvCga~K~~F~~i 84 (87)
T 1s24_A 70 CCPDCGATKEDYVLY 84 (87)
T ss_dssp CCSSSCCCGGGEEEC
T ss_pred CCCCCCCCHHHhhhc
Confidence 799999988877654
No 212
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=21.04 E-value=3.4e+02 Score=22.08 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHHHHHHHH---HhhhhhcchHHHHHHHHHHHHHH-----HHHHHhHHHHHh-HHHHhhhhHHHHHHHHHhHHHHHHh
Q 026366 78 TYSFLSAIEKE---VGRRLHGKEMEIEVMNCKNKELV-----EKIKQVSMEVQS-WHYKAKYNESVVNALKNNLKQAVAQ 148 (239)
Q Consensus 78 ~r~Ll~~~e~~---~~~rlreke~Eie~~~~~n~eLe-----Erl~ql~~E~q~-Wq~~A~~~Ea~~~~Lr~~Lqq~~~~ 148 (239)
++.-|..+|.. +..+++..+-||..++.+..+|. --|+.+.+-... -+.+..+....-..||+||.++...
T Consensus 70 Lh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGKFkKP~LkkV~~s~d~m~~allg~k~~~~~d~RanLK~Vkke 149 (180)
T 1j1e_C 70 LHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKE 149 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHSCC-----------------
T ss_pred HHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhcccccchhhhcccHHHHHHHHHHhhHhhhhhHHHhccccccc
Confidence 34455667666 67778888889999999988884 344444443322 2222333334445789999988543
No 213
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.72 E-value=1.9e+02 Score=27.07 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=45.2
Q ss_pred chHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHH-HHHHHHHHHHh
Q 026366 41 GDNLKLEIGRQKEEFDQYVRIQEGNLIKGVREMKQRHTYSFLSAIEKEVGRRLHGKEMEIEVMNCK-NKELVEKIKQV 117 (239)
Q Consensus 41 ~~~l~~~l~~q~~eid~~l~~q~e~lr~~l~e~r~r~~r~Ll~~~e~~~~~rlreke~Eie~~~~~-n~eLeErl~ql 117 (239)
+=+|+.-|-+|...||.=|+.-...|.. | +........+|..|......+-+.+..- +.+.++ ..+||+.++..
T Consensus 79 tCglad~L~kye~~V~~dl~~Le~~l~~-i-sn~Ts~a~~~v~~ik~s~~~~q~~~~~n-~~~~~~s~~mle~~~~~~ 153 (461)
T 3ghg_B 79 GCQLQEALLQQERPIRNSVDELNNNVEA-V-SQTSSSSFQYMYLLKDLWQKRQKQVKDN-ENVVNEYSSELEKHQLYI 153 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHTHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHTHH
T ss_pred cchHHHHHHhcccchhhHHHHHHHHHHH-H-HhhhHHHHHHHHHHHHHhccccCCCCcc-hhHHHHHHHHHHHHHHHH
Confidence 4467778888888888877554444332 2 2345566778888877766665555544 554444 45666665553
No 214
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.70 E-value=2.5e+02 Score=21.09 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHH----HHHhHHHHhhhhHHHHHHHHHh
Q 026366 99 EIEVMNCKNKELVEKIKQVSM----EVQSWHYKAKYNESVVNALKNN 141 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~----E~q~Wq~~A~~~Ea~~~~Lr~~ 141 (239)
++++...--.+|++.|..... +++.-...+..+|.....|+..
T Consensus 21 qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~ 67 (112)
T 1x79_B 21 QLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQG 67 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444333 2234444555555555555444
No 215
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=20.28 E-value=84 Score=23.58 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 026366 99 EIEVMNCKNKELVEKIKQVSMEVQSWH 125 (239)
Q Consensus 99 Eie~~~~~n~eLeErl~ql~~E~q~Wq 125 (239)
++++...++..|.+.+.++..|...|+
T Consensus 90 ~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 90 KYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445556677777777777777775
Done!