BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026367
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1A4Q2|PRXD1_BOVIN Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Bos taurus GN=PRORSD1 PE=2 SV=1
Length = 171
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISL 58
A E MLE LKV G TP AL + DV +LD F E+ +FHP++N ++ L
Sbjct: 89 FADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGL 147
Query: 59 NTNDLDKFLKSIGRDPAYVDLEAN 82
+ D F+K+ G DP ++ + N
Sbjct: 148 SPEDFLTFVKNTGHDPIILNFDKN 171
>sp|A6NEY8|PRXD1_HUMAN Putative prolyl-tRNA synthetase associated domain-containing
protein 1 OS=Homo sapiens GN=PRORSD1P PE=5 SV=3
Length = 169
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISL 58
A E MLE LKV G TP AL + DV +LD F E+ +FHP++N ++ L
Sbjct: 89 FADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGL 147
Query: 59 NTNDLDKFLKSIGRDPAYVDLE 80
+ D F+K G DP ++ +
Sbjct: 148 SPEDFLTFVKMTGHDPIILNFD 169
>sp|Q6NRL0|PRXD1_XENLA Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Xenopus laevis GN=prorsd1p PE=2 SV=1
Length = 168
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISL 58
A E +MLE LKV G TP AL + DV +LD F ER +FHP++N ++ +
Sbjct: 88 FADEASMLEKLKVGQGCATPLALFCDRG-DVQFVLDAQFLEGGYERVYFHPMTNAATLGM 146
Query: 59 NTNDLDKFLKSIGRDPAYVDLE 80
+ FLK G DP + +
Sbjct: 147 TPQEFVTFLKKTGHDPIIIHFD 168
>sp|Q9D820|PRXD1_MOUSE Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Mus musculus GN=Prorsd1 PE=2 SV=1
Length = 169
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISL 58
A E MLE LKV G TP +L + DV +LD F E+ +FHP++N ++ L
Sbjct: 89 FADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGL 147
Query: 59 NTNDLDKFLKSIGRDPAYVDLE 80
+ D F+K+ G DP ++ +
Sbjct: 148 SPEDFLIFVKATGHDPIILNFD 169
>sp|Q8I5R7|SYP_PLAF7 Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7)
GN=proRS PE=1 SV=1
Length = 746
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 16 GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 75
G ++P A+ N+ V L D+ K + HPL N S+ + T D+ KF +S P
Sbjct: 113 GCLSPLAIKNDKENIVKLYFDEEIKNMQEVIIHPLHNYSSLYIKTQDVIKFCESFNHAPE 172
Query: 76 YVDLEAN 82
YV ++ +
Sbjct: 173 YVQIKED 179
>sp|Q9L4Q7|PROX_CLOSD Prolyl-tRNA editing protein ProX OS=Clostridium sticklandii (strain
ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) GN=proX
PE=1 SV=1
Length = 164
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
A E+ + + LK+ G+V+PF ++N+ +V ++ DK + HP N ++ L+
Sbjct: 86 FASEDRLQKYLKLTKGAVSPFGVLNDETAEVEVVFDKNLVGRSCVAVHPNDNSATVVLSY 145
Query: 61 NDLDKFLKSIG 71
DL+K +K+ G
Sbjct: 146 EDLEKIVKANG 156
>sp|O60155|YHY6_SCHPO Putative proline--tRNA ligase C19C7.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC19C7.06 PE=3 SV=1
Length = 716
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCF-FHPLSNDMSISLN 59
MA + + E+ +P V F++ E+A V ++LD FHP S+ ++ ++
Sbjct: 92 MAAADLVEEVFGIPPTDVGIFSVNKENASKVHVVLDAALIQHNGLLAFHPSSSAKTVFVS 151
Query: 60 TNDLDKFLKSIGRDPAYVDLEA 81
+ +LKS+G +P VD A
Sbjct: 152 PAAVQTYLKSVGVNPIIVDFSA 173
>sp|Q6PFS2|PRXD1_DANRE Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Danio rerio GN=Prorsd1 PE=2 SV=1
Length = 184
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 16 GSVTPFALVNESARDVALLLDK----GFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIG 71
G VTP AL ++ R V +LD+ G C HP++N ++ + DL +FL+
Sbjct: 118 GCVTPLALFLDTERSVTAVLDRELTHGGHTHIHC--HPMTNSATMGITPADLLRFLEETQ 175
Query: 72 RDPAYVDLE 80
P + +
Sbjct: 176 HTPVILSFD 184
>sp|A4SGK7|RL7_PROVI 50S ribosomal protein L7/L12 OS=Prosthecochloris vibrioformis
(strain DSM 265) GN=rplL PE=3 SV=1
Length = 123
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 116 SAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILD 171
+AG S +N +A T +K AKD+ D + KAV + S DAEK V+E+ D
Sbjct: 63 AAGDSKINVIKVVRAITGLGLKEAKDLV---DGAPKAVKEAVSKEDAEKIVKELKD 115
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 200 RLRKC--CYPELKNLATIFKNTAYTQGFHA 227
R +KC CY +LKNL+ + KN A G H
Sbjct: 650 RHQKCKACYKQLKNLSNVVKNRAEQVGRHG 679
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,240,400
Number of Sequences: 539616
Number of extensions: 3616096
Number of successful extensions: 9322
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 9241
Number of HSP's gapped (non-prelim): 109
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)