Query 026367
Match_columns 239
No_of_seqs 142 out of 570
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3760 Uncharacterized conser 99.9 4.8E-23 1E-27 174.3 6.8 81 1-81 84-164 (164)
2 cd04335 PrdX_deacylase This CD 99.6 8E-16 1.7E-20 126.1 7.7 77 1-77 80-156 (156)
3 PRK10670 hypothetical protein; 99.3 2.9E-12 6.4E-17 107.2 7.2 72 1-81 86-157 (159)
4 TIGR00011 YbaK_EbsC ybaK/ebsC 99.3 6.6E-12 1.4E-16 102.6 7.2 71 1-80 82-152 (152)
5 cd04336 YeaK YeaK is an unchar 99.2 1.7E-11 3.6E-16 99.7 6.9 71 1-80 82-153 (153)
6 cd00002 YbaK_deacylase This CD 99.2 1.7E-11 3.6E-16 100.4 6.7 70 1-79 83-152 (152)
7 PF04073 tRNA_edit: Aminoacyl- 99.2 1.8E-11 3.9E-16 96.3 6.2 63 1-66 61-123 (123)
8 cd04332 YbaK_like YbaK-like. 99.1 9E-11 1.9E-15 92.1 5.7 64 1-68 68-131 (136)
9 cd04333 ProX_deacylase This CD 99.1 1.7E-10 3.7E-15 93.9 6.9 64 1-68 79-142 (148)
10 cd04939 PA2301 PA2301 is an un 98.8 9.5E-09 2.1E-13 85.4 6.2 64 1-68 72-135 (139)
11 COG2606 EbsC Uncharacterized c 98.5 1.6E-07 3.6E-12 79.5 6.1 65 1-69 83-147 (155)
12 cd04334 ProRS-INS INS is an am 98.2 2.1E-06 4.6E-11 70.9 4.4 50 1-55 93-142 (160)
13 PRK09194 prolyl-tRNA synthetas 96.5 0.0032 6.9E-08 62.2 4.7 49 1-53 314-362 (565)
14 TIGR00409 proS_fam_II prolyl-t 59.8 12 0.00026 37.8 4.2 41 1-45 319-359 (568)
15 PRK13169 DNA replication intia 50.5 30 0.00065 28.3 4.4 14 209-227 72-85 (110)
16 PRK14563 ribosome modulation f 33.8 13 0.00028 27.3 -0.2 21 218-238 10-31 (55)
17 PF14196 ATC_hydrolase: L-2-am 32.4 1.4E+02 0.003 23.6 5.6 71 166-237 21-98 (149)
18 cd03028 GRX_PICOT_like Glutare 26.8 1E+02 0.0023 23.0 3.8 43 39-81 5-47 (90)
19 PF00191 Annexin: Annexin; In 25.8 2.3E+02 0.0049 19.5 5.6 52 160-216 15-66 (66)
20 PF04957 RMF: Ribosome modulat 24.6 18 0.00038 26.5 -0.7 21 218-238 10-31 (55)
21 PF04091 Sec15: Exocyst comple 23.9 1.2E+02 0.0025 28.4 4.3 66 159-224 38-107 (311)
22 PF10309 DUF2414: Protein of u 22.5 76 0.0016 23.5 2.2 23 58-80 16-43 (62)
23 PRK11165 diaminopimelate decar 20.5 92 0.002 29.9 3.0 55 44-98 187-246 (420)
No 1
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=4.8e-23 Score=174.26 Aligned_cols=81 Identities=36% Similarity=0.621 Sum_probs=79.5
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 80 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs 80 (239)
|+++|.|+|+|||.|||||+||++||.+++|++|+|+.|+..+.|+|||++|++|.+|+.+||.+||+++||+|.++|++
T Consensus 84 Fg~~E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~~~infHPl~N~aTt~ia~~dl~~fL~atGhep~il~~~ 163 (164)
T COG3760 84 FGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASADLIRFLEATGHEPRILDVS 163 (164)
T ss_pred cCCHHHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhccccccccCCCccceeehHHHHHHHHHHcCCCceeeecc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 026367 81 A 81 (239)
Q Consensus 81 a 81 (239)
+
T Consensus 164 ~ 164 (164)
T COG3760 164 A 164 (164)
T ss_pred C
Confidence 5
No 2
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=99.62 E-value=8e-16 Score=126.11 Aligned_cols=77 Identities=47% Similarity=0.750 Sum_probs=74.5
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEE
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 77 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iV 77 (239)
||++|++++.+|+.+|+|+|||+.+|.++.+++|+|+++...+.++|||++++.++.|+++||.+|++.+||++.+|
T Consensus 80 ~a~~ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~~~v~~~~G~~~~~~~i~~~dl~~~~~~~~~~~~~~ 156 (156)
T cd04335 80 FASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV 156 (156)
T ss_pred cCCHHHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcCCeEEEeCCCCceEEEEcHHHHHHHHHHcCCCceEC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998875
No 3
>PRK10670 hypothetical protein; Provisional
Probab=99.33 E-value=2.9e-12 Score=107.24 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=67.4
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 80 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs 80 (239)
||++|++++++|+.+|+|+|||+.+ .+++|+|++|.+.+.++++++.++.++.|+++||.++++ .+|+||+
T Consensus 86 ~a~~eev~~~tG~~~G~v~P~Gl~~----~v~v~vD~~l~~~~~i~~~aG~~~~~~~i~~~dl~~l~~-----~~~~di~ 156 (159)
T PRK10670 86 MADPMVAQRSTGYLVGGISPLGQKK----RLPTVIDAPAQEFATIYVSGGKRGLDIELAAGDLAKLLD-----AKFADIA 156 (159)
T ss_pred cCCHHHHHHhhCCccceECccCCCC----CCeEEEehHHhcCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEEEEE
Confidence 7999999999999999999999855 499999999999999999999999999999999999988 5899997
Q ss_pred C
Q 026367 81 A 81 (239)
Q Consensus 81 a 81 (239)
+
T Consensus 157 ~ 157 (159)
T PRK10670 157 R 157 (159)
T ss_pred e
Confidence 4
No 4
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=99.29 E-value=6.6e-12 Score=102.61 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=65.6
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 80 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs 80 (239)
||++|++.+++|+.+|+|+||++.. ++++|+|+++.+.+.+++||+.++.++.|+++||.+|++ ++++|++
T Consensus 82 ~a~~ee~~~~~g~~~G~v~P~g~~~----~~~vivD~~l~~~~~~~~~~g~~~~~~~i~~~dl~~~~~-----~~~~~i~ 152 (152)
T TIGR00011 82 MADPKDAEKVTGYIRGGISPIGQKK----KFPTYIDESAKQLETIYVSGGKRGLQIELAPDDLIRLLD-----GTFADIA 152 (152)
T ss_pred cCCHHHHHHhcCCcccccCCCCcCC----CccEEEehHHhcCCEEEEecCCCCcEEEECHHHHHHHhC-----CEEEecC
Confidence 6899999999999999999999754 489999999999999999999999999999999999998 5788764
No 5
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=99.24 E-value=1.7e-11 Score=99.75 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=64.8
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCccc-CCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEc
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA-QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 79 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~-~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDf 79 (239)
||+++++++++|+.+|+|+||++.+ .+++|+|+++.+ .+.|++||++|+.++.|+.+||.+|+. +.+++|
T Consensus 82 ~a~~~~l~~~~g~~~G~v~P~gl~~----~v~~~iD~~l~~~~~~v~~~~G~~~~~l~i~~~dl~~~~~-----~~~~~~ 152 (153)
T cd04336 82 LASPEEAEELTGCVIGAVPPFSFDP----KLKLIADPSLLDRGDEIAFNAGRLDASVVLDTADYLRIAR-----PLVLQF 152 (153)
T ss_pred cCCHHHHHHHhCCccccCCCCCCCC----CceEEEChHHhccCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEecc
Confidence 6899999999999999999999964 589999999999 799999999999999999999999998 456665
Q ss_pred c
Q 026367 80 E 80 (239)
Q Consensus 80 s 80 (239)
+
T Consensus 153 ~ 153 (153)
T cd04336 153 T 153 (153)
T ss_pred C
Confidence 3
No 6
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=99.23 E-value=1.7e-11 Score=100.40 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=64.0
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEc
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 79 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDf 79 (239)
||++|++.+++|+.+|+|+||++.+ .|++|+|+++.+.+.+++|++.++.++.|+.+||.+|++ .+|+|+
T Consensus 83 ~a~~ee~~~~~g~~~G~v~P~~l~~----~v~~liD~~l~~~~~~~~~ag~~~~~l~i~~~~l~~~~~-----~~~~~~ 152 (152)
T cd00002 83 MAPPKDAERLTGYIRGGISPLGQKK----RLPTVIDESALDLDTIYVSAGKRGLQIELAPQDLAKLTG-----AKFADI 152 (152)
T ss_pred cCCHHHHHHhcCCcccccCccCcCC----CccEEEehHHhcCCEEEEeCCCCCcEEEECHHHHHHHhC-----CEEecC
Confidence 6899999999999999999999963 599999999999999999999999999999999999988 356653
No 7
>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....
Probab=99.23 E-value=1.8e-11 Score=96.30 Aligned_cols=63 Identities=22% Similarity=0.444 Sum_probs=56.6
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHH
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKF 66 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KF 66 (239)
||++|++++++|+.+|+|+||++. ...+++|+|+++.+.+.+++|++.++.++.|+.+||.+|
T Consensus 61 ~a~~e~~~~~~g~~~G~v~P~g~~---~~~~~vvvD~~l~~~~~v~~~~g~~~~~l~~~~~dl~~l 123 (123)
T PF04073_consen 61 LASPEELEELTGYEPGGVSPFGLP---PKGVPVVVDESLLELDNVYFGAGEPGSHLEISNEDLRKL 123 (123)
T ss_dssp E-HHHHHHHHHSSTTTS--SSGGG---STTEEEEEEGGGGGSSEEEEECSSTTEEEEEEHHHHHHH
T ss_pred hccHHHhhhccCCCcceecccccc---cCccEEEEEHHHcCCCcEEEeCCCCCeEEEEChHHhccC
Confidence 689999999999999999999995 345999999999999999999999999999999999987
No 8
>cd04332 YbaK_like YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).
Probab=99.12 E-value=9e-11 Score=92.11 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=60.8
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHH
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 68 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLe 68 (239)
||++|++.+++|+.+|+|+||++.. .|++|+|+++.+.+.+++|++.++.++.|+.+||.+++.
T Consensus 68 ~a~~~~~~~~~g~~~G~v~P~~~~~----~v~~~iD~~l~~~~~~~~~~g~~~~~~~i~~~~l~~~~~ 131 (136)
T cd04332 68 LASEEELEELTGCEPGGVGPFGLKK----GVPVVVDESLLELEDVYVGAGERGADLHLSPADLLRLLG 131 (136)
T ss_pred eCCHHHHHHHhCCCcCccCccccCC----CCcEEEehHHhhCCeEEEcCCCcCcEEEECHHHHHHHhc
Confidence 6899999999999999999999974 499999999999999999999999999999999999887
No 9
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=99.11 E-value=1.7e-10 Score=93.90 Aligned_cols=64 Identities=20% Similarity=0.396 Sum_probs=60.8
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHH
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 68 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLe 68 (239)
||++|++++++|+.+|+|+||++.. .|++|+|+++...+.+++|++.++.++.|+.+||.+++.
T Consensus 79 ~a~~~~~~~~~g~~~G~v~P~gl~~----~v~v~vD~~l~~~~~i~~~~g~~~~~~~i~~~dl~~~~~ 142 (148)
T cd04333 79 MADAEEVRELTGFAIGGVCPFGHPE----PLPVYLDESLKRFDEVWAAAGTPNAAFRLTPDELERLTG 142 (148)
T ss_pred eCCHHHHHHHHCCCCCcCCCCCCCC----CCeEEEehhHhhCCeEEEcCCCCCcEEEECHHHHHHHhC
Confidence 6899999999999999999999964 499999999999999999999999999999999999987
No 10
>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=98.80 E-value=9.5e-09 Score=85.38 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=61.0
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHH
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 68 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLe 68 (239)
||+++++++.+|..+|+|||||+..+ +++|||+++++++.|++.++.-..++.|+++||.++..
T Consensus 72 ma~~~ev~~~TGy~~GGvsP~G~~~~----~pv~iD~sl~~~~~v~~saG~~~~~~~l~p~~L~~~~~ 135 (139)
T cd04939 72 FAPMETAVELTGMEYGGITPVGLPAG----WPILVDSAVAERPAVVIGSGVRRSKLLLPGAALAELPG 135 (139)
T ss_pred cCCHHHHHHhhCCCCccCCcCCcCCC----CCEEEehHHhcCCEEEECCCCCCcEEEECHHHHHHHhC
Confidence 79999999999999999999999664 99999999999999999999999999999999999876
No 11
>COG2606 EbsC Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.6e-07 Score=79.45 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=62.0
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHh
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 69 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes 69 (239)
||+++++++.+|+..|.|||||+.. .+.+|+|+++++++.|++..+.-...|.|+++||.+++..
T Consensus 83 ma~~~~v~~~TGy~vGGv~P~G~~~----~~p~~iD~s~~~~~~I~~~aG~rg~~v~lap~dl~~l~~~ 147 (155)
T COG2606 83 MADPEEVQRLTGYVVGGVSPFGQKK----RLPTYIDESALRFDTIYVSAGKRGLLVELAPQDLAELLGA 147 (155)
T ss_pred cCCHHHHHHHhCCcccCcCCCCcCC----CCCEEEehhhhcCCeEEecCCCcCceEEECHHHHHHhhcc
Confidence 7899999999999999999999977 5999999999999999999999999999999999999873
No 12
>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.
Probab=98.17 E-value=2.1e-06 Score=70.92 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=43.2
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcce
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMS 55 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaT 55 (239)
||++|+|++++|+.+|+|+|||+. +|++|+|++|.+.+.+.+-.+.....
T Consensus 93 ~a~~eel~~~~g~~~G~v~P~gl~-----~v~~~iD~~l~~~~~~~~ga~~~~~~ 142 (160)
T cd04334 93 LASEEEIEAATGAPPGFIGPVGLK-----KIPIIADRSVADLKNFVCGANEDDYH 142 (160)
T ss_pred eCCHHHHHHhhCCCCCEECCcCCC-----CCeEEEehHHhcCCCEEEcCCCCCcE
Confidence 799999999999999999999997 59999999999987776665555543
No 13
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=96.49 E-value=0.0032 Score=62.25 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=41.6
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCc
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSND 53 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNt 53 (239)
||++|++.+.+|+.+|+|+|||+.+ +|++|+|.++...+.+.+..+...
T Consensus 314 ~a~~eel~~~~g~~~G~v~P~Gl~~----~v~viiD~sl~~~~~~~~gan~~g 362 (565)
T PRK09194 314 LATEEEIRAALGAVPGFLGPVGLPK----DVPIIADRSVADMSNFVVGANEDD 362 (565)
T ss_pred cCCHHHHHHhhCCCCCccCcccCCC----CceEEEeccccccccccccCCCCC
Confidence 6899999999999999999999986 499999999998776666544443
No 14
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=59.75 E-value=12 Score=37.81 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=34.5
Q ss_pred CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCee
Q 026367 1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERC 45 (239)
Q Consensus 1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I 45 (239)
+|++|++...+|..+|.+.|.++.. .|++++|.++.....+
T Consensus 319 ~a~~~~~~~~~g~~~g~~gpv~~~~----~~~i~~D~~~~~~~~~ 359 (568)
T TIGR00409 319 LATEEEIFQKIASGPGSLGPVNING----GIPVLIDQTVALMSDF 359 (568)
T ss_pred cCCHHHHHHhhCCCCCccCcccccc----CceEEechhhhccccc
Confidence 5789999999999999999999763 3899999998776444
No 15
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=50.45 E-value=30 Score=28.31 Aligned_cols=14 Identities=50% Similarity=0.940 Sum_probs=10.4
Q ss_pred hhHHHHHhhcccccccccc
Q 026367 209 LKNLATIFKNTAYTQGFHA 227 (239)
Q Consensus 209 l~~l~~~~kn~~y~~gf~~ 227 (239)
..||+++ |-+|||-
T Consensus 72 ~~NL~~L-----Y~EGFHI 85 (110)
T PRK13169 72 KDNLARL-----YQEGFHI 85 (110)
T ss_pred HHHHHHH-----HHcCcee
Confidence 3577776 7899984
No 16
>PRK14563 ribosome modulation factor; Provisional
Probab=33.78 E-value=13 Score=27.34 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=16.2
Q ss_pred cccccccccccccc-ccccCCC
Q 026367 218 NTAYTQGFHAGKAS-SLTQCPR 238 (239)
Q Consensus 218 n~~y~~gf~~~~~~-~~~~~~~ 238 (239)
+.||..||.||..- ....||-
T Consensus 10 ~RA~~rGYqAGv~GrSke~CPy 31 (55)
T PRK14563 10 ERAFSRGYQAGIAGRSKEMCPY 31 (55)
T ss_pred HHHHHHHHhhhccCCCcccCCC
Confidence 46899999999754 4667884
No 17
>PF14196 ATC_hydrolase: L-2-amino-thiazoline-4-carboxylic acid hydrolase
Probab=32.43 E-value=1.4e+02 Score=23.60 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhchhhhhHHHHHHhhhcchhhhHHHHHhhccccccccc-------cccccccccCC
Q 026367 166 VEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFH-------AGKASSLTQCP 237 (239)
Q Consensus 166 v~~i~~~~s~~~lse~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~~kn~~y~~gf~-------~~~~~~~~~~~ 237 (239)
..+..+.++.-=..++-.+++..-|+..|..+....... ..+++.++..+++.-...+|. .+.....++||
T Consensus 21 y~~~~~~~~~e~~~~~~~~a~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cp 98 (149)
T PF14196_consen 21 YKALIEEMGPEEAEEIIREAIRRFGRKRGKALAERMRRK-PDDFEKFAEMMKDYPSDWVFEEVVEDDEDEFEFDFTRCP 98 (149)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHhcCCccccceeeecCCCCeEEEEEEeCh
Confidence 333444444333334445566666666655544434333 567777777666666666664 23345566776
No 18
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=26.82 E-value=1e+02 Score=22.96 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=26.2
Q ss_pred cccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEccC
Q 026367 39 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA 81 (239)
Q Consensus 39 L~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfsa 81 (239)
+.+++.+.|-=++.+.+.---...+.++|+..|.++.++|+..
T Consensus 5 i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~ 47 (90)
T cd03028 5 IKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE 47 (90)
T ss_pred hccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3444444443332222222334567899999999999999864
No 19
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=25.79 E-value=2.3e+02 Score=19.49 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=37.2
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhHHHHHHhhhcchhhhHHHHHh
Q 026367 160 TDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIF 216 (239)
Q Consensus 160 ~~~~~~v~~i~~~~s~~~lse~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~~ 216 (239)
+|-..|++ ||-.-|.-=+.+|...=-+++|+.| .+.|++.++-|++.++.++
T Consensus 15 ~de~~li~-Il~~rs~~ql~~i~~~Y~~~~g~~L----~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 15 TDEDVLIE-ILCTRSPAQLRAIKQAYKKKYGKDL----EEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp STHHHHHH-HHHHSTHHHHHHHHHHHHHHHSS-H----HHHHHHHSTHHHHHHHHHH
T ss_pred CChhHhhh-HHhhhcccccceeehhhhhhhHHHH----HHHHHHhCCHHHHHHHHhC
Confidence 56666655 5555555557777777667888877 6889999999999987653
No 20
>PF04957 RMF: Ribosome modulation factor; InterPro: IPR007040 This entry contains ribosome modulation factors (RMF). They associate with 70s ribosomes and converts them to a dimeric form (100S ribosomes) which appear during the transition from the exponential growth phase to the stationary phase of Escherichia colicells [, ]. It has been proposed that RMF mediates the formation of a 'storage ribosome', the 100S particle, in stationary phase by inactivating excess ribosomes to protect them from degradation and to maintain the required balance between the concentrations of ribosomes and protein synthesis factors in order to maintain translational elongation efficiency [, ]. ; PDB: 2JRM_A 3V24_V 3V22_V.
Probab=24.62 E-value=18 Score=26.47 Aligned_cols=21 Identities=38% Similarity=0.798 Sum_probs=14.4
Q ss_pred ccccccccccccc-cccccCCC
Q 026367 218 NTAYTQGFHAGKA-SSLTQCPR 238 (239)
Q Consensus 218 n~~y~~gf~~~~~-~~~~~~~~ 238 (239)
+.||..||.||.. .....||-
T Consensus 10 ~RA~~~GYqAG~~Grske~CPy 31 (55)
T PF04957_consen 10 ERAYSRGYQAGLSGRSKELCPY 31 (55)
T ss_dssp HHHHHHHHHHHCTTTSGCC--S
T ss_pred HHHHHHHHHhhccCCCcccCCC
Confidence 4689999999965 34667885
No 21
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=23.94 E-value=1.2e+02 Score=28.39 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=46.4
Q ss_pred ccChHHHHHHHHHHHHHHHH--hhhhhhhhhhhchhhhhHHHHHHhhhcch--hhhHHHHHhhccccccc
Q 026367 159 FTDAEKFVEEILDRISAKLL--SETKEGNIAQQGQELGNEIANRLRKCCYP--ELKNLATIFKNTAYTQG 224 (239)
Q Consensus 159 ~~~~~~~v~~i~~~~s~~~l--se~~~~~~~~~~~~~~~~~~~~~~~~~~~--dl~~l~~~~kn~~y~~g 224 (239)
+..+..|+++.+.-++-+-+ +|+.+--.+--.+=|+..|.+.|++++.. .+.-++.|.-|+.|-+.
T Consensus 38 c~~ir~fi~~~~~F~~~~~~~~~eid~~v~ks~d~lL~~~l~~~L~~~i~~~~~l~qi~Qi~iNl~~le~ 107 (311)
T PF04091_consen 38 CRQIRSFIEKCYKFSDDLYQSSTEIDDIVRKSLDRLLTRVLNGSLKSKIRSSLNLSQIVQIVINLEYLEK 107 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHH
Confidence 67889999999999988865 66666322333344466677777777765 58889999999998653
No 22
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=22.54 E-value=76 Score=23.52 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=17.7
Q ss_pred ecHHHHHHHHHhc-----CCCcEEEEcc
Q 026367 58 LNTNDLDKFLKSI-----GRDPAYVDLE 80 (239)
Q Consensus 58 IS~eDL~KFLes~-----Ghep~iVDfs 80 (239)
|+++|++.|+... ...++|||=.
T Consensus 16 lsT~dI~~y~~~y~~~~~~~~IEWIdDt 43 (62)
T PF10309_consen 16 LSTDDIKAYFSEYFDEEGPFRIEWIDDT 43 (62)
T ss_pred CCHHHHHHHHHHhcccCCCceEEEecCC
Confidence 8999999999876 2446777743
No 23
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=20.48 E-value=92 Score=29.89 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=35.7
Q ss_pred eeeeecCCCc--ceeeecHHHHHHHHHhcCCCcEEEEccCCCCC---CCCCCCCcccccc
Q 026367 44 RCFFHPLSND--MSISLNTNDLDKFLKSIGRDPAYVDLEANPAV---GKDQPPDLAAFVP 98 (239)
Q Consensus 44 ~I~fHP~sNt--aTl~IS~eDL~KFLes~Ghep~iVDfsa~p~v---gkdqppdla~~vp 98 (239)
=+.||.+++. ..+.=..+.+.++++.+|+.+.+||+.-...+ +.+.++|+..|..
T Consensus 187 GlH~H~GS~~~~~~~~~~~~~l~~~~~~~g~~~~~IdiGGGf~~~y~~~~~~~d~~~~~~ 246 (420)
T PRK11165 187 GIHMHIGSGVDYGHLEQVCGAMVRQVIELGQDIEAISAGGGLSIPYREGEEPVDTEHYFG 246 (420)
T ss_pred EEEEeccCCCChHHHHHHHHHHHHHHHHhCCCCcEEEeCCCcccCCCCCCCCCCHHHHHH
Confidence 4678888853 11111113445677888999999999885443 4566778877664
Done!