Query 026369
Match_columns 239
No_of_seqs 190 out of 1203
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:09:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2332 Ferritin [Inorganic io 100.0 1.3E-43 2.9E-48 301.2 12.4 153 81-237 3-155 (178)
2 PRK15022 ferritin-like protein 100.0 2.8E-41 6.1E-46 285.7 18.1 139 91-237 2-140 (167)
3 cd00904 Ferritin Ferritin iron 100.0 4.8E-40 1E-44 274.8 18.0 141 92-237 1-142 (160)
4 PRK10304 ferritin; Provisional 100.0 4.1E-39 8.8E-44 271.8 18.2 140 90-237 1-140 (165)
5 COG1528 Ftn Ferritin-like prot 100.0 2.1E-37 4.6E-42 260.6 17.8 140 91-238 2-141 (167)
6 cd01056 Euk_Ferritin eukaryoti 100.0 6.2E-37 1.3E-41 255.7 18.2 141 92-237 1-142 (161)
7 cd01055 Nonheme_Ferritin nonhe 100.0 2.5E-32 5.4E-37 224.9 18.2 138 92-237 1-138 (156)
8 PRK10635 bacterioferritin; Pro 99.9 6.3E-26 1.4E-30 190.4 18.4 134 91-232 3-145 (158)
9 TIGR00754 bfr bacterioferritin 99.9 2.6E-25 5.6E-30 184.6 18.4 136 92-236 4-139 (157)
10 cd00907 Bacterioferritin Bacte 99.9 1.1E-23 2.4E-28 172.2 18.5 134 92-233 3-145 (153)
11 PF00210 Ferritin: Ferritin-li 99.9 4.2E-24 9.1E-29 169.5 15.6 133 96-237 1-138 (142)
12 cd01052 DPSL DPS-like protein, 99.9 5.9E-21 1.3E-25 155.3 17.7 135 92-235 4-148 (148)
13 cd01041 Rubrerythrin Rubreryth 99.9 8.2E-21 1.8E-25 153.8 15.8 129 95-236 2-131 (134)
14 COG2193 Bfr Bacterioferritin ( 99.9 1.9E-20 4.2E-25 155.1 17.4 135 91-233 3-146 (157)
15 cd01046 Rubrerythrin_like rubr 99.8 8.7E-18 1.9E-22 135.1 15.6 121 95-238 2-122 (123)
16 PRK13456 DNA protection protei 99.6 1E-13 2.2E-18 119.2 17.2 141 92-236 18-163 (186)
17 cd01043 DPS DPS protein, ferri 99.3 7E-11 1.5E-15 95.7 14.6 128 98-233 2-137 (139)
18 cd00657 Ferritin_like Ferritin 99.2 5.9E-10 1.3E-14 83.8 14.8 123 98-234 2-129 (130)
19 cd07908 Mn_catalase_like Manga 99.2 2.2E-09 4.8E-14 88.5 17.6 137 92-235 11-154 (154)
20 cd01045 Ferritin_like_AB Uncha 98.8 1.3E-07 2.8E-12 74.1 12.6 129 97-234 1-138 (139)
21 cd01051 Mn_catalase Manganese 98.7 1.6E-06 3.5E-11 72.8 17.4 132 93-236 19-153 (156)
22 PRK09448 DNA starvation/statio 98.7 2.9E-06 6.3E-11 71.6 17.1 132 93-236 21-161 (162)
23 PF02915 Rubrerythrin: Rubrery 98.6 1.4E-06 3E-11 68.4 13.9 128 97-233 1-135 (137)
24 COG0783 Dps DNA-binding ferrit 98.3 8.8E-05 1.9E-09 62.6 16.5 133 93-234 14-154 (156)
25 COG2406 Protein distantly rela 98.2 0.00018 3.9E-09 60.4 16.6 141 93-237 16-161 (172)
26 COG1633 Uncharacterized conser 97.9 0.00092 2E-08 57.4 16.4 116 92-217 22-149 (176)
27 cd01044 Ferritin_CCC1_N Ferrit 97.9 0.00013 2.8E-09 58.4 10.5 121 98-236 2-124 (125)
28 PRK12775 putative trifunctiona 97.4 0.0064 1.4E-07 64.4 16.0 134 93-237 859-997 (1006)
29 PF13668 Ferritin_2: Ferritin- 97.3 0.035 7.5E-07 44.6 16.8 126 96-231 3-131 (137)
30 COG1592 Rubrerythrin [Energy p 97.2 0.014 3.1E-07 49.8 13.2 105 94-217 4-109 (166)
31 cd01042 DMQH Demethoxyubiquino 97.1 0.014 3E-07 49.8 12.7 119 104-229 10-132 (165)
32 cd01048 Ferritin_like_AB2 Unch 96.0 0.4 8.7E-06 39.0 13.7 112 97-222 3-122 (135)
33 TIGR02284 conserved hypothetic 95.9 0.37 8.1E-06 39.5 13.3 112 96-217 2-122 (139)
34 PF03232 COQ7: Ubiquinone bios 95.8 0.36 7.7E-06 41.4 13.1 125 96-229 4-138 (172)
35 PF09537 DUF2383: Domain of un 95.7 0.11 2.3E-06 40.4 8.8 63 94-161 1-63 (111)
36 PF03405 FA_desaturase_2: Fatt 94.9 1.7 3.7E-05 41.0 15.9 126 90-217 57-191 (330)
37 cd01050 Acyl_ACP_Desat Acyl AC 94.0 2.9 6.3E-05 38.9 15.0 125 90-217 55-185 (297)
38 PF05974 DUF892: Domain of unk 91.2 8 0.00017 32.3 15.2 131 93-235 4-150 (159)
39 cd01041 Rubrerythrin Rubreryth 89.0 4.2 9.1E-05 32.5 9.0 60 93-154 72-132 (134)
40 PF12902 Ferritin-like: Ferrit 88.4 2.7 5.8E-05 37.5 8.2 62 99-162 1-62 (227)
41 PF04305 DUF455: Protein of un 88.2 6.2 0.00014 35.8 10.5 132 93-229 65-199 (253)
42 cd07910 MiaE MiaE tRNA-modifyi 88.2 17 0.00036 31.6 14.6 69 94-168 18-86 (180)
43 cd01046 Rubrerythrin_like rubr 86.9 3.3 7.1E-05 33.0 7.1 59 93-153 62-120 (123)
44 cd01045 Ferritin_like_AB Uncha 85.9 6.5 0.00014 30.1 8.2 56 91-151 83-138 (139)
45 cd07908 Mn_catalase_like Manga 84.3 4.9 0.00011 32.8 7.2 55 92-151 99-153 (154)
46 PF02915 Rubrerythrin: Rubrery 83.8 7.5 0.00016 29.8 7.7 52 94-150 84-135 (137)
47 cd01055 Nonheme_Ferritin nonhe 81.5 10 0.00022 30.7 8.0 59 94-154 80-138 (156)
48 COG3546 Mn-containing catalase 80.8 14 0.0003 34.1 9.1 118 92-217 18-169 (277)
49 PF05067 Mn_catalase: Manganes 78.5 57 0.0012 30.3 13.6 119 92-217 18-174 (283)
50 PF00210 Ferritin: Ferritin-li 78.5 12 0.00027 28.7 7.3 55 181-236 2-56 (142)
51 cd01052 DPSL DPS-like protein, 76.0 18 0.00039 28.8 7.8 58 178-236 6-63 (148)
52 cd00907 Bacterioferritin Bacte 74.6 28 0.0006 27.9 8.6 58 94-153 81-138 (153)
53 cd00657 Ferritin_like Ferritin 73.9 22 0.00048 25.7 7.3 53 94-151 77-129 (130)
54 PRK10635 bacterioferritin; Pro 71.6 22 0.00047 29.8 7.4 60 92-153 80-139 (158)
55 COG1633 Uncharacterized conser 71.0 32 0.00069 29.5 8.5 63 88-155 107-169 (176)
56 PLN00179 acyl- [acyl-carrier p 69.8 13 0.00028 35.9 6.3 124 91-217 115-248 (390)
57 cd07673 F-BAR_FCHO2 The F-BAR 68.3 59 0.0013 29.5 10.1 85 127-233 28-113 (269)
58 PF07875 Coat_F: Coat F domain 67.4 40 0.00087 23.6 8.2 56 97-157 4-59 (64)
59 COG2941 CAT5 Ubiquinone biosyn 66.7 92 0.002 27.5 14.1 112 104-228 51-171 (204)
60 cd07909 YciF YciF bacterial st 66.4 76 0.0016 26.4 16.6 128 96-232 5-144 (147)
61 PF14530 DUF4439: Domain of un 62.7 84 0.0018 25.7 13.2 105 98-217 1-106 (131)
62 PRK12775 putative trifunctiona 62.0 33 0.00071 36.9 8.2 58 95-156 942-999 (1006)
63 PF09537 DUF2383: Domain of un 60.6 58 0.0013 24.9 7.4 55 179-237 2-56 (111)
64 cd07649 F-BAR_GAS7 The F-BAR ( 60.5 1.2E+02 0.0025 27.1 10.3 31 126-156 20-50 (233)
65 cd07651 F-BAR_PombeCdc15_like 59.1 1.1E+02 0.0023 26.8 9.8 32 126-157 20-51 (236)
66 cd01044 Ferritin_CCC1_N Ferrit 55.8 98 0.0021 24.3 8.4 47 96-153 78-124 (125)
67 PRK13456 DNA protection protei 55.7 1.2E+02 0.0025 26.6 9.1 57 94-153 107-163 (186)
68 cd07647 F-BAR_PSTPIP The F-BAR 55.1 1.2E+02 0.0026 26.7 9.5 30 126-155 20-49 (239)
69 cd07648 F-BAR_FCHO The F-BAR ( 53.1 1.6E+02 0.0036 26.0 10.7 33 126-158 20-52 (261)
70 TIGR00754 bfr bacterioferritin 52.0 85 0.0018 25.6 7.5 59 93-153 81-139 (157)
71 PF13668 Ferritin_2: Ferritin- 46.5 1.1E+02 0.0023 24.2 7.1 55 180-235 3-62 (137)
72 cd01051 Mn_catalase Manganese 44.2 1.5E+02 0.0033 24.7 7.9 61 90-155 95-155 (156)
73 cd07674 F-BAR_FCHO1 The F-BAR 44.1 2.4E+02 0.0051 25.3 9.8 27 127-153 21-47 (261)
74 cd07658 F-BAR_NOSTRIN The F-BA 41.6 1.6E+02 0.0034 26.2 8.0 29 127-155 21-49 (239)
75 cd07652 F-BAR_Rgd1 The F-BAR ( 40.5 1.6E+02 0.0034 26.1 7.9 34 126-159 20-53 (234)
76 PF11860 DUF3380: Protein of u 40.0 61 0.0013 27.9 4.9 59 96-156 77-135 (175)
77 PRK10304 ferritin; Provisional 39.7 2.1E+02 0.0045 24.0 8.1 63 94-156 82-145 (165)
78 PF04611 AalphaY_MDB: Mating t 33.6 2.8E+02 0.0062 23.1 9.0 30 143-172 13-42 (147)
79 COG3461 Uncharacterized conser 31.2 2E+02 0.0042 22.6 5.9 46 106-156 29-74 (103)
80 smart00055 FCH Fes/CIP4 homolo 30.8 2E+02 0.0044 20.6 7.4 28 127-154 25-52 (87)
81 PF00611 FCH: Fes/CIP4, and EF 30.6 1E+02 0.0022 22.1 4.3 32 126-157 24-55 (91)
82 PRK07209 ribonucleotide-diphos 29.9 2.2E+02 0.0047 27.0 7.4 71 119-198 227-297 (369)
83 PRK13966 nrdF2 ribonucleotide- 27.2 2.5E+02 0.0055 26.1 7.2 86 118-217 175-260 (324)
84 COG4445 MiaE Hydroxylase for s 27.1 4.3E+02 0.0092 23.1 13.0 66 98-169 32-97 (203)
85 PRK13184 pknD serine/threonine 27.1 8.4E+02 0.018 26.5 13.1 124 63-212 560-690 (932)
86 PF06175 MiaE: tRNA-(MS[2]IO[6 25.5 5.2E+02 0.011 23.5 14.5 74 93-168 26-138 (240)
87 PRK13654 magnesium-protoporphy 25.2 6.2E+02 0.013 24.3 10.1 122 90-219 75-204 (355)
88 cd07671 F-BAR_PSTPIP1 The F-BA 24.7 5E+02 0.011 23.1 10.2 32 127-158 21-52 (242)
89 PRK09614 nrdF ribonucleotide-d 24.6 2.5E+02 0.0055 25.8 6.7 71 119-199 177-248 (324)
90 PF06744 DUF1215: Protein of u 23.7 3.7E+02 0.0079 21.2 6.7 78 88-165 24-105 (125)
91 COG2833 Uncharacterized protei 23.2 5.9E+02 0.013 23.4 12.4 72 92-168 73-144 (268)
92 PF10097 DUF2335: Predicted me 22.7 1.8E+02 0.004 19.8 4.1 29 126-154 12-40 (50)
93 cd01056 Euk_Ferritin eukaryoti 22.1 4.4E+02 0.0095 21.5 7.8 53 178-230 3-57 (161)
94 cd07672 F-BAR_PSTPIP2 The F-BA 22.0 5.7E+02 0.012 22.8 9.8 30 126-155 20-49 (240)
95 PRK12759 bifunctional gluaredo 21.8 7.2E+02 0.016 23.8 9.6 75 115-199 257-332 (410)
96 cd07653 F-BAR_CIP4-like The F- 21.4 5.5E+02 0.012 22.3 10.1 45 115-159 9-53 (251)
97 cd07655 F-BAR_PACSIN The F-BAR 21.1 6E+02 0.013 22.7 9.8 34 126-159 20-53 (258)
98 cd07909 YciF YciF bacterial st 20.8 4.9E+02 0.011 21.6 7.6 48 180-231 5-55 (147)
99 PF07875 Coat_F: Coat F domain 20.4 3E+02 0.0066 19.0 7.9 53 180-236 3-55 (64)
100 cd06891 PX_Vps17p The phosphoi 20.4 4.2E+02 0.0091 22.0 6.5 66 146-218 74-139 (140)
No 1
>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=301.16 Aligned_cols=153 Identities=54% Similarity=0.799 Sum_probs=147.6
Q ss_pred CcchhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 026369 81 SPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK 160 (239)
Q Consensus 81 ~~~~s~aRq~~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~ 160 (239)
....+.+|++|+++|+.++|.|||.||++||+|++|++||+||+|+++||++||.++|.|||+||++||+|+|+|||+|+
T Consensus 3 ~~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~ 82 (178)
T KOG2332|consen 3 TKMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIE 82 (178)
T ss_pred ccchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhh
Q 026369 161 LHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 161 l~~I~~P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~ 237 (239)
+++|.+|.. .+|++.+++|+.||.+||.+++.|.+||++|.+.+|++++||||++||.|||+.|++||+++++
T Consensus 83 l~~i~~P~~----~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~knD~hL~dflE~~fL~eQVksIkeL~~~~~~ 155 (178)
T KOG2332|consen 83 LQDIKKPEL----DEWGKGLEALEAALHLEKNVNQSLLELHSLATKKNDPHLCDFLESHFLNEQVKSIKELSDYLAN 155 (178)
T ss_pred ccccccccc----chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 999999954 5789999999999999999999999999999999999999999999999999999999999875
No 2
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=285.68 Aligned_cols=139 Identities=18% Similarity=0.228 Sum_probs=131.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCC
Q 026369 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (239)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~ 170 (239)
.+++++.+||+|||.|+++||+|++||+||+ +.+|||||+||+.+|.|||+||+||++|+++|||+|.+++|++|+.+
T Consensus 2 ~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~~ 79 (167)
T PRK15022 2 ATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGEK 79 (167)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCccc
Confidence 5789999999999999999999999999998 67999999999999999999999999999999999999999999866
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhh
Q 026369 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 171 f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~ 237 (239)
| ++++++|+.+|++|+.||+.|++|+++|.+++|++|++||+ ||+.||+++++.+.++++.
T Consensus 80 ~-----~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~~D~~t~~FL~-wfv~EQ~eEe~~~~~ild~ 140 (167)
T PRK15022 80 L-----NSLEELFQKTLEEYEQRSSTLAQLADEAKALNDDSTLNFLR-DLEKEQQHDGLLLQTILDE 140 (167)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4 57899999999999999999999999999999999999999 9999999998777777653
No 3
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=4.8e-40 Score=274.83 Aligned_cols=141 Identities=50% Similarity=0.822 Sum_probs=134.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCC
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f 171 (239)
+++|+++||+|||.|+++||+|++||+||++++|+|||||+||+.+|+|||+||++|++||++|||+|+++.|++|..
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~-- 78 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPS-- 78 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcc--
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHh-hHHHHHHHHHHhhhhhhh
Q 026369 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE-FLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 172 ~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~-FLeEQve~Ik~l~d~L~~ 237 (239)
.+|++++++|+.+|++|+.+++.|++++++|.+++|+.+++||+ | ||+||++++++++++|+.
T Consensus 79 --~~~~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~-~~fi~eQ~ee~~~~~~~l~~ 142 (160)
T cd00904 79 --DEWGGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLE-SHFLDEQVKEIKQVGDILTN 142 (160)
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhh-chhhHHHHHHHHHHHHHHHH
Confidence 13467899999999999999999999999999999999999999 7 999999999999999975
No 4
>PRK10304 ferritin; Provisional
Probab=100.00 E-value=4.1e-39 Score=271.77 Aligned_cols=140 Identities=21% Similarity=0.318 Sum_probs=134.2
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCC
Q 026369 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (239)
Q Consensus 90 ~~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~ 169 (239)
+++++++++||+|||.|++|+|+|++||+||+ ++||+|||+||+.+|.|||+||++|++|+++|||+|.+++|+.|..
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~ 78 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA 78 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence 36899999999999999999999999999999 7899999999999999999999999999999999999999998887
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhh
Q 026369 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 170 ~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~ 237 (239)
+| .++.++|+.+|++|+.++..|++++++|.+.+|+++++||+ |||+|||++++.++++++.
T Consensus 79 ~~-----~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~-~fl~EQveEe~~~~~l~~~ 140 (165)
T PRK10304 79 EY-----SSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDK 140 (165)
T ss_pred cc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 65 57899999999999999999999999999999999999998 9999999999999998874
No 5
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=260.57 Aligned_cols=140 Identities=29% Similarity=0.423 Sum_probs=134.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCC
Q 026369 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (239)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~ 170 (239)
.++++.++||+|||.|++++|+|++||+||+ ..+|||+|+||+.+|.||+.||+||++|++.||++|.+..|.+|+.+
T Consensus 2 ls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~ 79 (167)
T COG1528 2 LSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNK 79 (167)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCccc
Confidence 4789999999999999999999999999999 67999999999999999999999999999999999999999999987
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhhc
Q 026369 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLICY 238 (239)
Q Consensus 171 f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~~ 238 (239)
| +++.++|+.+|++|+.++..|++|.++|.+.+|+.|.+||+ ||+.||+++++.+++|+++.
T Consensus 80 ~-----~s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLq-Wfv~EQ~eEe~l~~~I~d~~ 141 (167)
T COG1528 80 F-----SSLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQ-WFVAEQVEEEKLFKTILDKL 141 (167)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 6 46899999999999999999999999999999999999999 99999999999999999863
No 6
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00 E-value=6.2e-37 Score=255.68 Aligned_cols=141 Identities=55% Similarity=0.871 Sum_probs=133.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC-CC
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP-SE 170 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~-~~ 170 (239)
+++|+.+||+|||.|++++++|++||+||++.++|++||++||+.+|+|||+||++|++|+++|||+|++++|++|. ..
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~ 80 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE 80 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence 47899999999999999999999999999976669999999999999999999999999999999999999999997 44
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhh
Q 026369 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 171 f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~ 237 (239)
|.++.++|+.+|++|+.+++.|++++++|.+++|+.+.+||+.+||+||+++++.++++|+.
T Consensus 81 -----~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~ 142 (161)
T cd01056 81 -----WGSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLESEFLEEQVESIKKLAGYITN 142 (161)
T ss_pred -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999933999999999999999875
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=100.00 E-value=2.5e-32 Score=224.92 Aligned_cols=138 Identities=40% Similarity=0.564 Sum_probs=131.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCC
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f 171 (239)
+++|+++||+||+.|+.++++|++||.||++ +++|||++||+..|.|||+||+++++|+++|||.|++++|++|+.+
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~- 77 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSE- 77 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcc-
Confidence 5789999999999999999999999999995 6999999999999999999999999999999999999999998754
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhh
Q 026369 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 172 ~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~ 237 (239)
|+++.++++.+|.+|+.+++.|++++++|.+++|+.+++||+ ||+++|++.++.++++++.
T Consensus 78 ----~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~-~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 78 ----FESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQ-WFVKEQVEEEALARDILDK 138 (156)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999998 9999999999999999874
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.94 E-value=6.3e-26 Score=190.36 Aligned_cols=134 Identities=18% Similarity=0.129 Sum_probs=124.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCC
Q 026369 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (239)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~ 170 (239)
.++++++.||++++.||.|+++|+.||.+|+ +||+++++++|+.+|.|||+||++|++||+.+||.|+++++++|..+
T Consensus 3 ~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~g 80 (158)
T PRK10635 3 GDVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNIG 80 (158)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence 5789999999999999999999999999999 89999999999999999999999999999999999999999888765
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHH---------hhHHHHHHHHHHhh
Q 026369 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVES---------EFLGEQVSFDLDSS 232 (239)
Q Consensus 171 f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~---------~FLeEQve~Ik~l~ 232 (239)
.++.++|+.++.+|+.++..|+++++.|.+.+|+.++++|+. +||+.|...|..+|
T Consensus 81 ------~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~i~~~G 145 (158)
T PRK10635 81 ------EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIGKLG 145 (158)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999983 25566666666666
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.94 E-value=2.6e-25 Score=184.57 Aligned_cols=136 Identities=19% Similarity=0.139 Sum_probs=124.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCC
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f 171 (239)
++++.++||+||+.|+.++++|+.|+.|+. +|+++|++.||++++.||++||.+|++|++.+||.|.+++++.|+..
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~- 80 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG- 80 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC-
Confidence 789999999999999999999999999996 89999999999999999999999999999999999999999888764
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhh
Q 026369 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLI 236 (239)
Q Consensus 172 ~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~ 236 (239)
.++.++|+.++++|+.++..|+++++.|.+.+|+.|.+||+ ||+.+..+.+..+..+|.
T Consensus 81 -----~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~-~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 81 -----ETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLE-EILEDEEEHIDWLETQLE 139 (157)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999 766666666665555554
No 10
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.92 E-value=1.1e-23 Score=172.22 Aligned_cols=134 Identities=20% Similarity=0.211 Sum_probs=123.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCC
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f 171 (239)
++++++.||++|+.|+.+++.|+.++.+|+ +.+++|+++||+.++.||++||+.|.+|++.+||.|.+..++.|..+
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~- 79 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG- 79 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC-
Confidence 678999999999999999999999999998 77999999999999999999999999999999999999888877653
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHH---------hhHHHHHHHHHHhhh
Q 026369 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVES---------EFLGEQVSFDLDSSS 233 (239)
Q Consensus 172 ~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~---------~FLeEQve~Ik~l~d 233 (239)
.++.++++.+++.|+.++..|++++++|.+.+|+.+++|++. ||++++++.++.+|+
T Consensus 80 -----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~~~g~ 145 (153)
T cd00907 80 -----EDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLIDKMGL 145 (153)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 257899999999999999999999999999999999999996 677777777777776
No 11
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.92 E-value=4.2e-24 Score=169.49 Aligned_cols=133 Identities=36% Similarity=0.470 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC-----CCCCCCC
Q 026369 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSE 170 (239)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~-----I~~P~~~ 170 (239)
+++||++++.|+.+++.|+.++.+|+ +.+++|+++||+++++++|+|++++++|+..|||.|.... ++.|..
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~- 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE- 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence 57899999999999999999999999 8899999999999999999999999999999999766554 555543
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhh
Q 026369 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 171 f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~ 237 (239)
|.++.++|+.+++.|+.+...++++++.|.+.+|+.|.+|++ +|+.+|.+.+..++++|+.
T Consensus 78 -----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~-~~l~~~~~~~~~l~~~l~~ 138 (142)
T PF00210_consen 78 -----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLD-EFLEEEEKHIWMLQAHLTN 138 (142)
T ss_dssp -----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999996 9999999999999999875
No 12
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.87 E-value=5.9e-21 Score=155.26 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=121.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCC-------
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI------- 164 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I------- 164 (239)
.+++++.||++++.|+.++++|+.++.+++ ++++++++++|++++.||++||+.+.+|++.+||.|.....
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~--g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVK--GPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 467899999999999999999999999999 78999999999999999999999999999999999997653
Q ss_pred ---CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhh
Q 026369 165 ---MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVL 235 (239)
Q Consensus 165 ---~~P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L 235 (239)
+.|.. ...++.++++.+++.|+.+++.++++++.|.+ +|+.+++|++ |+|.+|.+.++.+.++|
T Consensus 82 ~~~~~~~~-----~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D~~t~~ll~-~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 82 CKCGYLPP-----DPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KDPVTYDLAL-AILNEEIEHEEDLEELL 148 (148)
T ss_pred ccccCCCC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence 22221 22578899999999999999999999999976 9999999998 99999999999988765
No 13
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.86 E-value=8.2e-21 Score=153.81 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCcc
Q 026369 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (239)
Q Consensus 95 ~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~~ 174 (239)
..+.||+.+..|+.++++|+.|+.|++ ++|++|+++||+.+|.+|+.||.++++|++.+||.|. .|+..
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~--~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~~---- 70 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKAR--KEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIG---- 70 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCCC----
Confidence 457899999999999999999999999 6799999999999999999999999999999999999 44443
Q ss_pred ccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhh
Q 026369 175 EKGDALYAMELALSLEKL-TNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLI 236 (239)
Q Consensus 175 e~g~~lea~e~AL~lEk~-vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~ 236 (239)
++++.+.|+.++++|+. ++..|.+++++|.+++|+.+++|++ +.+.+...-.+.+...|.
T Consensus 71 -~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~-~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 71 -IGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFE-AIAEAEKVHAERYKKALE 131 (134)
T ss_pred -cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 36789999999999995 8899999999999999999999998 888887777777766654
No 14
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.9e-20 Score=155.07 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=128.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCC
Q 026369 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (239)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~ 170 (239)
..+++++.||+++..||.+.++|+.++..++ |||+.-++++|+++|.+||.||++++++|++.+|.|+++++.+-..+
T Consensus 3 G~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~iG 80 (157)
T COG2193 3 GDPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRIG 80 (157)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccC
Confidence 4689999999999999999999999999999 99999999999999999999999999999999999999999886665
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHH---------hhHHHHHHHHHHhhh
Q 026369 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVES---------EFLGEQVSFDLDSSS 233 (239)
Q Consensus 171 f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~---------~FLeEQve~Ik~l~d 233 (239)
.++.++++..|.+|..+...|++.+..|.+.+||.+++.++. +||+.|...|.++|.
T Consensus 81 ------~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~~iL~deEEHid~LetqL~li~~iG~ 146 (157)
T COG2193 81 ------ETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLEEILADEEEHIDWLETQLDLIAKIGE 146 (157)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHcchHHHHHHHHHHHHHHHHHhH
Confidence 579999999999999999999999999999999999999985 699999999999985
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.78 E-value=8.7e-18 Score=135.13 Aligned_cols=121 Identities=21% Similarity=0.186 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCcc
Q 026369 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (239)
Q Consensus 95 ~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~~ 174 (239)
+++.||+|++.|+.++++|+.|+.|++ ..|++|+++||+.+|.+|+.||.++.+++ |+ |+
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~--~eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i~--------- 61 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQ--REGYPEVAEELKRIAMEEAEHAARFAELL---GK------VS--------- 61 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------Cc---------
Confidence 678999999999999999999999999 67999999999999999999999999966 22 11
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhhc
Q 026369 175 EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLICY 238 (239)
Q Consensus 175 e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~~ 238 (239)
+++.++|+.++++|+.++..|.+++++|++.+|+.+.+||+ +.+...-.-.+.+...|..|
T Consensus 62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~-~~~~~E~~H~~~~~~~l~~~ 122 (123)
T cd01046 62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFH-EAAKDEARHGKMLKGLLERY 122 (123)
T ss_pred --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 36889999999999999999999999999999999999998 88888888888888777665
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.59 E-value=1e-13 Score=119.20 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=123.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCC--C-CC
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM--Q-PP 168 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~--~-P~ 168 (239)
.+++++.||+.+..|+.+.|.|..++.... ++.-++++.||.+...||+.||+.|.++|.+.||.|.+.+-+ . ..
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 568999999999999999999999999999 888999999999999999999999999999999999887652 0 01
Q ss_pred CCC-Cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhh
Q 026369 169 SEF-DHAE-KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLI 236 (239)
Q Consensus 169 ~~f-~~~e-~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~ 236 (239)
..+ ...+ ..|+.++++..|.-|+..+..|+++++.+. ..||.|.+.++ ..|.+.++-...+.++|.
T Consensus 96 ~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~-~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 96 CPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLAL-AILQEEIEHEAWFSELLG 163 (186)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 111 0011 247999999999999999999999999998 68999999999 699999999999999885
No 17
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=99.32 E-value=7e-11 Score=95.71 Aligned_cols=128 Identities=20% Similarity=0.156 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC--------CCCCCC
Q 026369 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------IMQPPS 169 (239)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~--------I~~P~~ 169 (239)
.||..+..++..+..|..+.-+.. +.++..++.+|.+.+.++++|+..+.+++...||.|..+. ++.++.
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 588999999999999998877777 8899999999999999999999999999999999998763 554442
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhh
Q 026369 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSS 233 (239)
Q Consensus 170 ~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d 233 (239)
.+ -++.++++..++.|..+...+++.++.|.+.+|+.|+++++ .++.+.-+.+-.+..
T Consensus 80 ~~-----~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll~-~il~~~ek~~w~l~a 137 (139)
T cd01043 80 GV-----LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLT-EIIRELEKQAWMLRA 137 (139)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 21 25789999999999999999999999999999999999998 777776666655543
No 18
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.24 E-value=5.9e-10 Score=83.77 Aligned_cols=123 Identities=24% Similarity=0.282 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC-----CCCCCCCCC
Q 026369 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSEFD 172 (239)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~-----I~~P~~~f~ 172 (239)
.||..+..|+.+...|..++..++ .+++..+|...+.+|+.|++.|.+++..+||.+.... ...+..
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~--- 73 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPK--- 73 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCC---
Confidence 689999999999999999999886 6889999999999999999999999999999987543 111111
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhh
Q 026369 173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSV 234 (239)
Q Consensus 173 ~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~ 234 (239)
...++..++..++..|......+..+.+.+. |+.+.+++. +.+.+.......+..+
T Consensus 74 --~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~---d~~~~~~~~-~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 74 --TSDDPAEALRAALEVEARAIAAYRELIEQAD---DPELRRLLE-RILADEQRHAAWFRKL 129 (130)
T ss_pred --CccCHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 2257889999999999999999999998874 999999998 8888888877776654
No 19
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=99.19 E-value=2.2e-09 Score=88.53 Aligned_cols=137 Identities=13% Similarity=0.065 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q 026369 92 EDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (239)
Q Consensus 92 s~e~e~aLNeQIn---~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~ 168 (239)
+++.-..|++++. .|+.++.+|+..+.-.. . +.+.+++.|...|.+|++|++.|.+++.++||.|.+.......
T Consensus 11 ~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~--~-~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~ 87 (154)
T cd07908 11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISE--E-KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDK 87 (154)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHHHHHcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhcccc
Confidence 6677888999988 99999999999888877 3 6899999999999999999999999999999998754321100
Q ss_pred C-CCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhh
Q 026369 169 S-EFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVL 235 (239)
Q Consensus 169 ~-~f~~---~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L 235 (239)
. .|.. ....++.++++.++..|+.....|.++.+. ..|+.+.+.|+ ..+.+..+-++.+..+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~---~~d~~~r~ll~-~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 88 FTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAET---IKDPYIRALLN-RIILDEKLHIKILEELL 154 (154)
T ss_pred CCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence 0 0000 012478899999999999999999999874 48999999998 78888888888777654
No 20
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.80 E-value=1.3e-07 Score=74.08 Aligned_cols=129 Identities=25% Similarity=0.208 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcccccCCCC--CCCC--
Q 026369 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG--GKVKLHSIMQ--PPSE-- 170 (239)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RG--G~v~l~~I~~--P~~~-- 170 (239)
++||..|..|..+...|..++..++. +++..+|...+.+|+.|++.|.+.+..+| +.|.+..-.. +...
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEP 75 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhh
Confidence 36899999999999999999998873 38999999999999999999999999997 3343321100 0000
Q ss_pred C---CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhh
Q 026369 171 F---DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSV 234 (239)
Q Consensus 171 f---~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~ 234 (239)
+ .-....+..++++.++..|+.....|..+.+. ..|+.+.+.+. ..+++..+..+.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~---~~d~~~~~~~~-~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 76 EFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEK---AEDPEVKKLFE-ELAEEERGHLRLLEEL 138 (139)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 0 00122578999999999999999998888765 47899999998 8888888887777654
No 21
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.72 E-value=1.6e-06 Score=72.84 Aligned_cols=132 Identities=12% Similarity=0.102 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCC
Q 026369 93 DECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (239)
Q Consensus 93 ~e~e~aLNeQIn---~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~ 169 (239)
|..-.+|.+|+. -|+.++.+|+..+..++ ..+.+...|...+.||+.|++.|.+.+...||.+.-.+= ..
T Consensus 19 p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw---~~ 91 (156)
T cd01051 19 PRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPW---TA 91 (156)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC---CC
Confidence 344445555553 59999999999999994 358999999999999999999999999999984332111 11
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhh
Q 026369 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLI 236 (239)
Q Consensus 170 ~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~ 236 (239)
.|. ...+++...+..+++.|+.....+.++++.+ +|+.+.+.|. +.+.+...-...+++.|.
T Consensus 92 ~yv-~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---~Dp~v~~~l~-~I~~rE~~H~~~f~~~l~ 153 (156)
T cd01051 92 AYI-QSSGNLVADLRSNIAAESRARLTYERLYEMT---DDPGVKDTLS-FLLVREIVHQNAFGKALE 153 (156)
T ss_pred ccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 111 1237899999999999999999999999887 4999999998 788887888877777664
No 22
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.65 E-value=2.9e-06 Score=71.59 Aligned_cols=132 Identities=9% Similarity=0.050 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--------ccCC
Q 026369 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSI 164 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~--------l~~I 164 (239)
+.+.+.||..+.-++.....|..+.-+-. +..+..+..+|.+++.++++|+..+.+++...||.|. ...|
T Consensus 21 ~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~i 98 (162)
T PRK09448 21 KATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTPL 98 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCCC
Confidence 55789999999999999999998888777 7789999999999999999999999999999999985 3344
Q ss_pred CC-CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhh
Q 026369 165 MQ-PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLI 236 (239)
Q Consensus 165 ~~-P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~ 236 (239)
+. |... -+..++++..++.-..+...+++.+ .+.+|+.|.+++. .++.+.-+.+=.+..+|.
T Consensus 99 ~e~~~~~------~~~~~~l~~l~~d~~~~~~~~r~~i---~e~~D~~T~dll~-~~~~~~eK~~WmL~a~l~ 161 (162)
T PRK09448 99 KSYPLDI------HNVQDHLKALADRYAIVANDVRKAI---DEAGDEDTADIFT-AASRDLDKFLWFIEAHIE 161 (162)
T ss_pred CCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHH---hhcCChhHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 44 3322 2456899999999999999999988 7789999999998 788877777777766653
No 23
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.64 E-value=1.4e-06 Score=68.37 Aligned_cols=128 Identities=21% Similarity=0.225 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCC-------CCCC
Q 026369 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM-------QPPS 169 (239)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~-------~P~~ 169 (239)
+.|+..|..|..+...|..++.-+.+ .+ |.+.+.|...|.+|.+|+..|.+.+..+++.+...... .|..
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~--~~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKD--EG-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhh--cc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence 46889999999999999999999994 46 99999999999999999999999999998765443111 1111
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhh
Q 026369 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSS 233 (239)
Q Consensus 170 ~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d 233 (239)
..... .++..+++.++..|+.....+..+. ....|+....+|+ +...+.-+-.+.+..
T Consensus 78 ~~~~~--~~~~~~l~~a~~~E~~~~~~Y~~~a---~~~~~~~~~~~~~-~l~~~E~~H~~~l~~ 135 (137)
T PF02915_consen 78 EEETD--ENLEEALEMAIKEEKDAYEFYAELA---RKAPDPEIRKLFE-ELAKEEKEHEDLLEK 135 (137)
T ss_dssp CSSHH--HHHHHHHHHHHHHHHTHHHHHHHHH---HHTTSHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hhhhh--HHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 11111 2578999999999999999888776 4558999999998 677766666655543
No 24
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=98.27 E-value=8.8e-05 Score=62.61 Aligned_cols=133 Identities=18% Similarity=0.124 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--------ccCC
Q 026369 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSI 164 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~--------l~~I 164 (239)
.++.+.||+++.-=+......+...-+-. +..+--+..+|.++..+-.+|...+.+++...||.|. ...|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~~~HWnV~--G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTHNYHWNVK--GPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccee--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 56788888877655444444443332233 6677779999999999999999999999999999985 3344
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhh
Q 026369 165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSV 234 (239)
Q Consensus 165 ~~P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~ 234 (239)
+..+.+ .++.++++....--+.+.+.+++.+..|.+.+|+.|.+++. ..+.+.-+.+=.++-+
T Consensus 92 ke~~~~------~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl~~-~~~~~~EK~~Wml~a~ 154 (156)
T COG0783 92 KEEPGD------YTAREMLKELVEDYEYLIKELRKGIELADEAGDEVTADLLT-DIIRELEKTLWMLRAT 154 (156)
T ss_pred cccCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH-HHHHHHHHHHHHHHHh
Confidence 444332 36889999999999999999999999999999999999998 6777766665444433
No 25
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=98.20 E-value=0.00018 Score=60.35 Aligned_cols=141 Identities=19% Similarity=0.231 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-----cccCCCCC
Q 026369 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV-----KLHSIMQP 167 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v-----~l~~I~~P 167 (239)
+++++.|-.....|+.+.|-|..++.... +..=.|...|....-.|-|.|++.+..++-..||.+ ++.+|..-
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~--Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC 93 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALK--GLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGC 93 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCC
Confidence 56778888888999999999999888777 455566667777777777889999999999999986 35555432
Q ss_pred CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhh
Q 026369 168 PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 168 ~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~ 237 (239)
+.-+=..+|.|+.+.+..+++-|+-....+.++...-. .+|+.|.+.-+ ..|.|.++..-.+..+|..
T Consensus 94 ~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T~-GkDprTyeLa~-~IL~eEi~hr~~~~~ll~~ 161 (172)
T COG2406 94 KPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLTA-GKDPRTYELAE-AILREEIEHRTWFLELLGK 161 (172)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHcccc-CCCcchHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 22221234568899999999999999999999998853 69999999998 8999999988877776653
No 26
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.00092 Score=57.37 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc---------
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------- 162 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~--------- 162 (239)
...++++|+..|..|..+..+|..++..+++. -+.+.|...+.+|++|..+|-+.+-++++.....
T Consensus 22 ~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~ 96 (176)
T COG1633 22 ELSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIES 96 (176)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhh
Confidence 34789999999999999999999999999953 4899999999999999999999999999887211
Q ss_pred CCCCCCCC---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhH
Q 026369 163 SIMQPPSE---FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217 (239)
Q Consensus 163 ~I~~P~~~---f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe 217 (239)
.+..+... +.. ..+..++++.|+..|+...+-|..+.... .|.....++.
T Consensus 97 ~~~~~~~~~~~~~~--~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~---~~~~~~~~~~ 149 (176)
T COG1633 97 EILEYLQPGKEMEK--SVSYLEAIEAAMEAEKDTIEFYEELLDEL---VNEEAKKLFK 149 (176)
T ss_pred hhccccCccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHHHHH
Confidence 11111111 111 14689999999999999999999888665 4555555665
No 27
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=97.93 E-value=0.00013 Score=58.41 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCc--cc
Q 026369 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH--AE 175 (239)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~--~e 175 (239)
.+|+.+..|..+..+|..++..... +...+.|...|++|++|++-+-+++..+|+.|. .+....-+.. ..
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 73 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP---RPKLKIFFYKLLAR 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CccHHHHHHHHHHH
Confidence 4788999999999999999998772 459999999999999999999999999998875 1110000000 00
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhh
Q 026369 176 KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLI 236 (239)
Q Consensus 176 ~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~ 236 (239)
..++..+++.+...|+.....|.++... ...+. ..+.|..+-++.+...+.
T Consensus 74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~~~---------~~~~~-~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 74 IFGPTFVLKLLERGEERAIEKYDRLLEE---------RPELK-EIIADELEHEEVLIALLD 124 (125)
T ss_pred HHhHHHHHHHHHHhHHhhHhhHHhhhhh---------hHHHH-HHHHHHHHHHHHHHHhhh
Confidence 1234567888889999999999988876 33555 577777777777766654
No 28
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.35 E-value=0.0064 Score=64.41 Aligned_cols=134 Identities=11% Similarity=0.044 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-ccCCCCCCCCC
Q 026369 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK-LHSIMQPPSEF 171 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~-l~~I~~P~~~f 171 (239)
....+.|.-.|..|-..--.|..++.-.. =+.+.++|...|.+|++|.+.|.+....- .+. -.....+...+
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~--~~~~~~~~~~~~~~~ 931 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAA--APSPTEGFKIERAAI 931 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCcccccccchhhh
Confidence 56688999999999999999999999765 46799999999999999999998876421 010 00000000000
Q ss_pred -Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh-HHHhhHHhhHHHHHHHHHHhhhhhhh
Q 026369 172 -DH--AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQ-MAEFVESEFLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 172 -~~--~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~-t~~FLe~~FLeEQve~Ik~l~d~L~~ 237 (239)
.. ..+.++.++++.|+..|+...+-|.++.+.+ .|.. ...+++ .+.+|.-+.++.|...++.
T Consensus 932 ~~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~---~d~e~~k~l~~-~LA~EEk~Hl~~L~~~~d~ 997 (1006)
T PRK12775 932 MAGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAET---PDGSVERQLYK-ELAAEEREHVALLTTEFER 997 (1006)
T ss_pred hhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 00 0124678999999999999999999887654 6765 678887 8888888888888877753
No 29
>PF13668 Ferritin_2: Ferritin-like domain
Probab=97.34 E-value=0.035 Score=44.59 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCC
Q 026369 96 EAAINEQINVEYNVSYVYHALYAYFDRD---NIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD 172 (239)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~fdrd---~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~ 172 (239)
.+.||-.++.|+...-.|..-..-+..+ ..-=+....+|+.....|+.|+..|-+.+. |+.+. +.|..+|.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~~ 76 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDFP 76 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCccccc
Confidence 3678999999999999999888754210 123455788999999999999999999888 76663 55655552
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHh
Q 026369 173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDS 231 (239)
Q Consensus 173 ~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l 231 (239)
...+.+....+..|+..|......|..+.... .|+.+...+- ..+...-....-+
T Consensus 77 ~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~---~~~~~~~~~~-~i~~~Ea~H~~~i 131 (137)
T PF13668_consen 77 FDPFTDDASFLRLAYTLEDVGVSAYKGAAPQI---EDPELKALAA-SIAGVEARHAAWI 131 (137)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHH
Confidence 23446789999999999999999999888755 5888877776 5555444443333
No 30
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=97.17 E-value=0.014 Score=49.84 Aligned_cols=105 Identities=17% Similarity=0.154 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCc
Q 026369 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH 173 (239)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~ 173 (239)
..++-|-+...-|-.+...|+.||...++. |++.+++.|+..|.+|..||..+.+-+.+.+ .+
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~---------~~------ 66 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL---------LV------ 66 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------cc------
Confidence 355666777778899999999999999954 9999999999999999999999999887766 11
Q ss_pred cccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCChhHHHhhH
Q 026369 174 AEKGDALYAMELALSLEKLTNE-KLLSLHSVADRNNDPQMAEFVE 217 (239)
Q Consensus 174 ~e~g~~lea~e~AL~lEk~vt~-~l~~L~~~A~~~~D~~t~~FLe 217 (239)
++|..+-++.++.-|..-.. .+......|.+.++-...+++.
T Consensus 67 --~~~~~eNl~~aieGE~~e~~emyp~~ae~A~~~g~~~~a~~f~ 109 (166)
T COG1592 67 --LGDTRENLEEAIEGETYEITEMYPVFAEVAEEEGFKEAARSFR 109 (166)
T ss_pred --cccHHHHHHHHHccchHHHHHhChHHHHHHHHcCcHHHHHHHH
Confidence 14667778888887765544 4448888899998777777776
No 31
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=97.11 E-value=0.014 Score=49.78 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC-CCCCCCCCCc---cccCCH
Q 026369 104 NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-IMQPPSEFDH---AEKGDA 179 (239)
Q Consensus 104 n~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~-I~~P~~~f~~---~e~g~~ 179 (239)
.-|+.|..+|......+. .+.+..++++.+.+|.+|-..+-+.+..+|++|.+-. += ....|-- ......
T Consensus 10 AGE~gA~~IY~gQ~~~~~-----~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW-~~~gf~lG~~tal~G~ 83 (165)
T cd01042 10 AGEVGAVRIYRGQLAVAR-----DPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLW-YVAGFALGALTALLGK 83 (165)
T ss_pred cchHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHHHHHHHHhhCh
Confidence 359999999999999887 2899999999999999999999999999999997532 10 0000000 000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHH
Q 026369 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDL 229 (239)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik 229 (239)
.-+|-..-+.|..+...|++-.+.-....|..+.+.|+ .|.+|.++--.
T Consensus 84 ~~a~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~-~~r~DE~~H~d 132 (165)
T cd01042 84 KAAMACTAAVETVVEEHYNDQLRELPAQPDKELRAIIE-QFRDDELEHAD 132 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHH
Confidence 35688889999999999998887765546999999998 88887766543
No 32
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=95.96 E-value=0.4 Score=39.03 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCC-----
Q 026369 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF----- 171 (239)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f----- 171 (239)
+.|.-.+..|..+--+|..++.-|. .-.-|...+..|.+|...|-..+...|..... .+.+..-|
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~--~~~~~~~f~~~~~ 72 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPV--DPFSGGVFTNPQY 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCC--CccccccccchhH
Confidence 4677788999999999999998773 45678888999999999998888877743211 11111111
Q ss_pred Cc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHH
Q 026369 172 DH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLG 222 (239)
Q Consensus 172 ~~---~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLe 222 (239)
+. ....+..++++.+...|+.....|.++.+.+ .|+.+...++ ....
T Consensus 73 ~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~---~d~d~k~v~~-~L~~ 122 (135)
T cd01048 73 NQLVEQGPKSLQDALEVGVLIEELDIADYDRLLERT---QNPDIRDVFE-NLQA 122 (135)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHH-HHHH
Confidence 00 1234688999999999999999999888665 5788887776 4433
No 33
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=95.88 E-value=0.37 Score=39.54 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCC--------
Q 026369 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP-------- 167 (239)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P-------- 167 (239)
++.||+.|...+-+..-|-..+...+ -|.+..+|.+.+.+-..|+..|-.++...||.|.-..-.+-
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~ 76 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK 76 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 57899999999999999999988665 47899999999999999999999999999999864221110
Q ss_pred -CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhH
Q 026369 168 -PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217 (239)
Q Consensus 168 -~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe 217 (239)
..-|.. ++-..+++.+..-|..+.+.|.+..+-. .-++.+...|+
T Consensus 77 lks~~~~---~~d~aiL~~~e~gEd~~~~~y~~aL~~~--~l~~~~r~~l~ 122 (139)
T TIGR02284 77 IRATLTP---NDDYVVLEEAERGEDRAKKAYDETLADQ--DTPAAARDVAL 122 (139)
T ss_pred HHHHHcC---CChHHHHHHHHHhHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence 011110 2234567778888888888888776442 35777776665
No 34
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=95.76 E-value=0.36 Score=41.42 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCC---CC-
Q 026369 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS---EF- 171 (239)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~---~f- 171 (239)
...|.---.-|+.|..+|......+.. .+.+..++++..++|.+|-..+-+.+..+|.+|.+-. |.- .|
T Consensus 4 ~r~lRVdHAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~---Plw~~~g~~ 76 (172)
T PF03232_consen 4 ARILRVDHAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLN---PLWYVAGFA 76 (172)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHH---HHHHHHHHH
Confidence 344444456799999999999988883 7889999999999999999999999999999986421 210 00
Q ss_pred ---CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChhHHHhhHHhhHHHHHHHHH
Q 026369 172 ---DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADR---NNDPQMAEFVESEFLGEQVSFDL 229 (239)
Q Consensus 172 ---~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~---~~D~~t~~FLe~~FLeEQve~Ik 229 (239)
-.. .....-+|-..-+.|..+.+.|++-++.-.. ..|..+.+.|+ .|-+|..+--.
T Consensus 77 LG~~ta-l~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~-~~r~DE~~H~d 138 (172)
T PF03232_consen 77 LGALTA-LLGDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIE-QFRDDELEHRD 138 (172)
T ss_pred HHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHHHHH
Confidence 000 0012356778888999999999988887663 78999999998 88887776543
No 35
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=95.67 E-value=0.11 Score=40.41 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 026369 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL 161 (239)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l 161 (239)
+.+..||+.|.....+...|...+.-++ + +.+..+|.+.+.+-..|+..|-.++...||.|.-
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~--~---~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~ 63 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAE--D---PELKSLFQEFAQERQQHAEELQAEIQELGGEPEE 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----S---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 4678999999999999999999999888 2 7899999999999999999999999999999864
No 36
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=94.95 E-value=1.7 Score=40.98 Aligned_cols=126 Identities=19% Similarity=0.299 Sum_probs=86.8
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHH-HHHHhccc---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCC
Q 026369 90 KYEDECEAAINEQINVEYNVSYVYH-ALYAYFDR---DNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM 165 (239)
Q Consensus 90 ~~s~e~e~aLNeQIn~El~ASy~Yl-smAa~fdr---d~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~ 165 (239)
..+++...+|---+-.|=+... |+ .++.+|.. ++....+.++|......||-.|+.-|-+|+...| .++...+.
T Consensus 57 ~Lpd~~~~alv~~llTEd~LPs-Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg-~vDp~~lE 134 (330)
T PF03405_consen 57 TLPDDARVALVGNLLTEDNLPS-YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSG-RVDPVALE 134 (330)
T ss_dssp TS-HHHHHHHHHHHHHHHTHHH-HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-CCCCC
T ss_pred cCCHHHHHHHHHHHHhhhhhhH-HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhC-CCCHHHHH
Confidence 4777777666666666655554 44 34444443 2222456899999999999999999999997654 55544443
Q ss_pred CCC-----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhH
Q 026369 166 QPP-----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217 (239)
Q Consensus 166 ~P~-----~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe 217 (239)
.-. .+|+.....++...|-...-.|+.+.-..+++.++|...+|+.+...+.
T Consensus 135 ~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~~DpvL~~il~ 191 (330)
T PF03405_consen 135 RTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQAGDPVLAQILG 191 (330)
T ss_dssp HCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 321 2333222245778888999999999999999999999999999998887
No 37
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=94.02 E-value=2.9 Score=38.86 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=89.4
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCC--
Q 026369 90 KYEDECEAAINEQINVEYNVSYVYH-ALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ-- 166 (239)
Q Consensus 90 ~~s~e~e~aLNeQIn~El~ASy~Yl-smAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~-- 166 (239)
..++....+|---.-.| ...=.|+ .+..+|..++..-+++++|......||-.|+.-|-+|+..- |++....+..
T Consensus 55 ~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~~le~~~ 132 (297)
T cd01050 55 ELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPRALERTR 132 (297)
T ss_pred cCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 46777777777777777 3444555 44555554322447899999999999999999999999884 5554333321
Q ss_pred ---CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhH
Q 026369 167 ---PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217 (239)
Q Consensus 167 ---P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe 217 (239)
...+|+.....++...|-...-.|+-+.-.++++.+.|. .+||.+...+.
T Consensus 133 ~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~-~gdPvL~~i~~ 185 (297)
T cd01050 133 QYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG-AGDPVLAKLLG 185 (297)
T ss_pred HHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHH
Confidence 112333221235668888888899999999999999998 89999988887
No 38
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=91.15 E-value=8 Score=32.28 Aligned_cols=131 Identities=16% Similarity=0.127 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC---------
Q 026369 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------- 163 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~--------- 163 (239)
+-....|.+....|-+..-.+-.|+.-.. -|.+..-|..+..+-++|.++|-+-+...|+.|.-..
T Consensus 4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~-----~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~ 78 (159)
T PF05974_consen 4 DLFIDELRDLYSAEKQLLKALPKLAEAAS-----SPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHH
Confidence 34577888888999999999999998776 2889999999999999999999999999999885222
Q ss_pred -----CCCCCCCCCccccCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhh
Q 026369 164 -----IMQPPSEFDHAEKGDALYA--MELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVL 235 (239)
Q Consensus 164 -----I~~P~~~f~~~e~g~~lea--~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L 235 (239)
+..+..+ +.+.++ +-.+...|..-+..|..|...|...++....+.|+ .-|+|....-..+..++
T Consensus 79 e~~~~~~~~~~d------~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG~~e~a~lL~-~~L~EE~~~~~~L~~~a 150 (159)
T PF05974_consen 79 EAQELIEEFAED------PAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLGDEEAAQLLE-QNLDEEEAADEKLTQLA 150 (159)
T ss_dssp HHHHHHHT-S-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCC------chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 1111111 123333 35788899999999999999999999999999998 66777666666665554
No 39
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=89.02 E-value=4.2 Score=32.52 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 93 DECEAAINEQINVEYN-VSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~-ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~ 154 (239)
..+.+.|...+..|.. +.-.|..++..+.. .+-...+.||.....+|..|+..|-+.+..
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~--e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEE--EGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677889999999996 77999999999994 589999999999999999999998776654
No 40
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=88.41 E-value=2.7 Score=37.48 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Q 026369 99 INEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH 162 (239)
Q Consensus 99 LNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~ 162 (239)
|...|.+|+...-.||..+.--+. . .-.....-.+.-+.|||-|.....+-+|-.||.|.+.
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~~-~-~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIKP-G-TNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS--T-TSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHcccCC-C-cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 567889999999999955544442 2 2333888999999999999999999999999999886
No 41
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=88.17 E-value=6.2 Score=35.83 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCC
Q 026369 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD 172 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~ 172 (239)
..-...|..-.|.||+|...++-...-|.+ +.-.. |-.=|.+.+.||-.|-..+.+++...| ..+++++....=|+
T Consensus 65 ~~r~~llHaiAhIE~~AIdLa~Da~~RF~~-~lP~~-f~~D~~~va~dEarHf~ll~~rL~~lG--~~yGd~P~h~gLw~ 140 (253)
T PF04305_consen 65 EGRAALLHAIAHIELNAIDLALDAIYRFHP-NLPRE-FYDDWLRVADDEARHFRLLRERLEELG--SDYGDLPAHDGLWE 140 (253)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCcchhhHHHH
Confidence 344677777789999999999999999922 33333 333334679999999999999999999 56777776653222
Q ss_pred cccc--CCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHH
Q 026369 173 HAEK--GDALYAME-LALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDL 229 (239)
Q Consensus 173 ~~e~--g~~lea~e-~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik 229 (239)
..+. .|++.=|- .-+-+|...-+.--.+.+.-+..+|..+++.|+ --+.|.|.-++
T Consensus 141 ~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi~HV~ 199 (253)
T PF04305_consen 141 AAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEIGHVA 199 (253)
T ss_pred HHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHH
Confidence 2111 12222221 223556665555566667777889999999998 56666655443
No 42
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=88.16 E-value=17 Score=31.64 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q 026369 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (239)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~ 168 (239)
.....|-++-+.|.-|+..=++|=..|- ..+++..-+-..+.||+.|=++.++-+.+|| +.+.++.+++
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rg--i~l~~~~~~~ 86 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRG--IPLGPDSKDP 86 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCCCCH
Confidence 5667888999999999988776654444 3588999999999999999999999999999 5666666553
No 43
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=86.90 E-value=3.3 Score=33.03 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n 153 (239)
+.+.+.|...+..|...+-.|..++..+. ..+....+.||+.....|.+|++.+-+.+.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~--~egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAK--AEGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788889999999999999999999999 458999999999999999999999877664
No 44
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=85.86 E-value=6.5 Score=30.09 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026369 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (239)
Q Consensus 91 ~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY 151 (239)
......++|...|..|-.+.-.|..++..+.. +.....|...+.+|+.|...|-+.
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d-----~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAEKAED-----PEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567889999999999999999999987762 368899999999999999988653
No 45
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=84.34 E-value=4.9 Score=32.79 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY 151 (239)
.....+.|...+..|-.+...|..++...+ =+.....|...+.+|.+|...|-+.
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445777999999999999999999999765 2778899999999999999988654
No 46
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=83.78 E-value=7.5 Score=29.83 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 026369 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFME 150 (239)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLik 150 (239)
....++...+..|-.+.-.|..++..+. -+...++|...+.+|+.|...|-+
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~l~~~E~~H~~~l~~ 135 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARKAP-----DPEIRKLFEELAKEEKEHEDLLEK 135 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999998876 467899999999999999998864
No 47
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=81.45 E-value=10 Score=30.68 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (239)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~ 154 (239)
.+.+.|...++.|..+...|..++..+.+ .+-+..+.||...-.++.+|..++-+++..
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDLALE--EKDYATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999994 478899999999999999999888888773
No 48
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=80.78 E-value=14 Score=34.09 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc-----cC
Q 026369 92 EDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL-----HS 163 (239)
Q Consensus 92 s~e~e~aLNeQIn---~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l-----~~ 163 (239)
++....+|.+|+. -|+.+..+|+..+.-|. + +++-..+...+-||..|-+.+-.-++..-..... .+
T Consensus 18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r----~-~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~ 92 (277)
T COG3546 18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR----D-AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAE 92 (277)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC----c-hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchh
Confidence 4566777888874 69999999999888777 2 7789999999999999999988877765443333 00
Q ss_pred C------------------CCCCCC-----CC---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhH
Q 026369 164 I------------------MQPPSE-----FD---HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217 (239)
Q Consensus 164 I------------------~~P~~~-----f~---~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe 217 (239)
+ -.++.+ |. -...|+++-=|...+..|......+..|++.+ .|+.+.+.|.
T Consensus 93 l~~s~~~~~n~~h~~~~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mt---dDpgvrd~L~ 169 (277)
T COG3546 93 LYGSGLGGMNPHHISVLLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEMT---DDPGVRDTLS 169 (277)
T ss_pred hHHhhccCCCchhhhhhccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeecC---CCccHHHHHH
Confidence 0 001110 10 01347888888999999999988888888776 6788877775
No 49
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=78.47 E-value=57 Score=30.27 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC-----
Q 026369 92 EDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS----- 163 (239)
Q Consensus 92 s~e~e~aLNeQIn---~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~----- 163 (239)
++..-.+|.+|+. -|+.++.+|+..+.-|... . -+...+...+-||..|.|.+-.-+++.-+......
T Consensus 18 DP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~--~--~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~ 93 (283)
T PF05067_consen 18 DPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGP--E--KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAA 93 (283)
T ss_dssp -HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SST--T--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHH
T ss_pred CHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCc--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhc
Confidence 4566677777774 6999999999999999842 1 13589999999999999998776665433221110
Q ss_pred ------------------CC-----CCC----CCCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHH
Q 026369 164 ------------------IM-----QPP----SEFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMA 213 (239)
Q Consensus 164 ------------------I~-----~P~----~~f~~---~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~ 213 (239)
|. .|. .-|+- ...||++--|...++.|....-.+..|+..+ .|+...
T Consensus 94 ~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mT---dDpgvk 170 (283)
T PF05067_consen 94 PGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMT---DDPGVK 170 (283)
T ss_dssp GGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT------HHHH
T ss_pred ccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCccHH
Confidence 00 010 01110 1348999999999999999999999999776 799999
Q ss_pred HhhH
Q 026369 214 EFVE 217 (239)
Q Consensus 214 ~FLe 217 (239)
+.|.
T Consensus 171 d~L~ 174 (283)
T PF05067_consen 171 DMLS 174 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9886
No 50
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=78.47 E-value=12 Score=28.75 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhh
Q 026369 181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLI 236 (239)
Q Consensus 181 ea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~ 236 (239)
+.+...++.|......+..++..+...+-+.+..|++ +..++..+....+++++.
T Consensus 2 ~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~-~~a~e~~~h~~~l~e~i~ 56 (142)
T PF00210_consen 2 EALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQ-DQAEEEREHADELAERIL 56 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhH-HHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999888889999998 666666677777666654
No 51
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=75.98 E-value=18 Score=28.78 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhh
Q 026369 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLI 236 (239)
Q Consensus 178 ~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~ 236 (239)
.+.+.+...++.|......|+..|..+...+.+.+..+++ ..-.+..+-+..+++.+.
T Consensus 6 ~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~-~~~~ee~~Had~laEri~ 63 (148)
T cd01052 6 ELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELE-EAAEEELNHAELLAERIY 63 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999889999999998 667777777777777664
No 52
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=74.63 E-value=28 Score=27.86 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (239)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n 153 (239)
.+.+.|...+..|-.+.-.|..+...++. .+=+..+.||.....+|.+|...|=+.+.
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~~A~~--~~D~~t~~~l~~~~~~e~~h~~~l~~~l~ 138 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIALCEE--VGDYVSRDLLEEILEDEEEHIDWLETQLD 138 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999988873 46788999999999999999987655543
No 53
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=73.88 E-value=22 Score=25.69 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026369 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (239)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY 151 (239)
...+.|...+..|-.+...|..+...+. -+...++|.....+|..|...+-++
T Consensus 77 ~~~~~l~~~~~~E~~~~~~y~~~~~~~~-----d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 77 DPAEALRAALEVEARAIAAYRELIEQAD-----DPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777779999999999999998876 4568999999999999999988765
No 54
>PRK10635 bacterioferritin; Provisional
Probab=71.57 E-value=22 Score=29.83 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n 153 (239)
.+.+.+.|..-+..|..+.-.|..+..+|.+ .+=+.-..+|...-.+|-+|...|-..+.
T Consensus 80 g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~--~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 80 GEDVEEMLRSDLRLELEGAKDLREAIAYADS--VHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999994 46677888899999999999998876654
No 55
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=71.04 E-value=32 Score=29.47 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=54.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026369 88 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (239)
Q Consensus 88 Rq~~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~R 155 (239)
....+....++|-..|-.|-.++.+|.-+...-.+ ++..+.|+..++.|+.|+..+-.+.+..
T Consensus 107 ~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~-----~~~~~~~~~~a~~E~~H~~~l~~~~~~~ 169 (176)
T COG1633 107 EMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVN-----EEAKKLFKTIADDEKGHASGLLSLYNRL 169 (176)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999999999987773 5688899999999999999998887764
No 56
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=69.76 E-value=13 Score=35.88 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=85.0
Q ss_pred ccHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc--cCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCC
Q 026369 91 YEDECEA-AINEQINVEYNVSYVYHALYAYFD--RDNIA--LRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM 165 (239)
Q Consensus 91 ~s~e~e~-aLNeQIn~El~ASy~YlsmAa~fd--rd~v~--L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~ 165 (239)
.++.+.- ++-.-|..|-=-+ |+.+-..++ +|.-| -...+.|-+....||-.|+.-|-+|+.- -|+|+...|.
T Consensus 115 Lpd~~~v~LvgdmiTEeaLPt--Y~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLyl-TgrVDm~~iE 191 (390)
T PLN00179 115 LPDDYFVVLVGDMITEEALPT--YQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYL-SGRVDMRQIE 191 (390)
T ss_pred CChhhhhhhhhcchhhhcchH--HHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhh-ccCcCHHHHH
Confidence 4444433 3344444444444 554444433 12222 3458999999999999999999999876 4556555443
Q ss_pred CC-----CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhH
Q 026369 166 QP-----PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217 (239)
Q Consensus 166 ~P-----~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe 217 (239)
.- ..+|+.....++...|-..-=.|..+.-+-.+..++|.+.+|+.+...+.
T Consensus 192 ~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg 248 (390)
T PLN00179 192 KTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICG 248 (390)
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHH
Confidence 31 13444433357899999999999999999999999999999999888776
No 57
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=68.34 E-value=59 Score=29.48 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=50.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 026369 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSV-AD 205 (239)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~-A~ 205 (239)
...|+.||++.|.=|.++|..|.+.-.+-++.+.. |+...++ ..=+..++.+-++|.. +.
T Consensus 28 ~kel~~f~keRa~iEe~Yak~L~kLak~~~~~~~~---------------Gt~~~~~----~~~~~e~e~~a~~H~~la~ 88 (269)
T cd07673 28 TKELSDFIRERATIEEAYSRSMTKLAKSASNYSQL---------------GTFAPVW----DVFKTSTEKLANCHLELVR 88 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc---------------ChHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999888765533211 3332333 3333333444444432 22
Q ss_pred hCCChhHHHhhHHhhHHHHHHHHHHhhh
Q 026369 206 RNNDPQMAEFVESEFLGEQVSFDLDSSS 233 (239)
Q Consensus 206 ~~~D~~t~~FLe~~FLeEQve~Ik~l~d 233 (239)
...| .. .-|. .|.++|.+.-|++.+
T Consensus 89 ~L~~-~~-~~l~-~~~~~~~k~rK~~ke 113 (269)
T cd07673 89 KLQE-LI-KEVQ-KYGEEQVKSHKKTKE 113 (269)
T ss_pred HHHH-HH-HHHH-HHHHHHHHHHHhHHH
Confidence 2333 22 3354 677777776666543
No 58
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=67.36 E-value=40 Score=23.60 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026369 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (239)
Q Consensus 97 ~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG 157 (239)
+.+++-++.+=.++..|...+.=+. =|.+-..|.....+..+++..+++|++.+|=
T Consensus 4 ~i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 4 DIANDLLNSEKAAARNYATAALECA-----NPELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3466677778888888887777666 4779999999999999999999999999984
No 59
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=66.72 E-value=92 Score=27.52 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCcc---------
Q 026369 104 NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA--------- 174 (239)
Q Consensus 104 n~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~~--------- 174 (239)
.-|+.|-++|.-.+.+.... ..---.++.+++|-.|--.+-+++.+||.+|.+-. |- |.+.
T Consensus 51 aGE~~A~~iY~GQ~~~~r~~-----~~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~---P~--W~~~~FalGA~a~ 120 (204)
T COG2941 51 AGELGAQAIYQGQAAVARSP-----EPRIQLKEMADEEIDHLAWFEQRLLELGVRPSLLN---PL--WYAAAFALGAGAG 120 (204)
T ss_pred hhHHHHHHHHhhHHHHHcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHH---HH--HHHHHHHHHHHHh
Confidence 45999999999998888843 23338899999999999999999999999997532 11 0000
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHH
Q 026369 175 EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFD 228 (239)
Q Consensus 175 e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~I 228 (239)
--|+ .-+|-..-+.|..+-..|..=...-. +.|..+..-|. .|=.+.++--
T Consensus 121 Llgd-k~am~~teavE~vIe~Hy~~ql~~L~-~~d~~lr~~l~-qfR~DE~eH~ 171 (204)
T COG2941 121 LLGD-KAAMGFTEAVETVIEKHYDGQLRELP-NLDAELRAILA-QFRDDELEHL 171 (204)
T ss_pred hccc-HHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHH-HHhhHHHHHH
Confidence 0011 23455556667766666665444322 48889998887 7776666543
No 60
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=66.42 E-value=76 Score=26.44 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCC---------
Q 026369 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ--------- 166 (239)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~--------- 166 (239)
++.|.+....|-++.-.--.|+. ....|-+..-|..+..|=++|.++|-+=+...|+.|.-..-..
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~~-----~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~ 79 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAK-----AATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAE 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHH
Confidence 45566666666666655555652 3468999999999999999999999999999998875332100
Q ss_pred -CCCCCCccccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhh
Q 026369 167 -PPSEFDHAEKGDALYAM--ELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSS 232 (239)
Q Consensus 167 -P~~~f~~~e~g~~lea~--e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~ 232 (239)
.-.++.+ +.++++. -.+...|..=+..|..|+..|+..++....+.|+ .-|+|....-+++.
T Consensus 80 ~~~~~~~~---~~v~Da~li~aaq~vEHyEIA~YgtL~~~A~~lG~~e~a~lL~-~~L~EE~~~d~~lt 144 (147)
T cd07909 80 ELIEETGD---SAVLDAALIAAAQKVEHYEIAGYGTLRALAKLLGLDDAADLLQ-ETLDEEKATDRKLT 144 (147)
T ss_pred HHHhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHH
Confidence 0011111 3456666 7889999999999999999999999999998888 56665554444443
No 61
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=62.71 E-value=84 Score=25.68 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCcc-cc
Q 026369 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA-EK 176 (239)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~~-e~ 176 (239)
+|...+..|+.+.|.|=..+.+.+.+ ...--.....+-|...+.++..+..+|+.+.... ..|.-. +-
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~~------~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~-----aaY~lP~~v 69 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDGD------RRAAARAALAAHRARRDALAAALRAAGATPPPPE-----AAYQLPFPV 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHHHHHHHHHHHHHHHHHHHHHHTT------------SS---SS--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-----CCCCCCCCC
Confidence 47788899999999999999998743 4444556667778888999999999998875432 111110 12
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhH
Q 026369 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217 (239)
Q Consensus 177 g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe 217 (239)
.|+..+..++..+|..+...++.+. - ..|...+.|--
T Consensus 70 ~d~~sa~~la~~lE~~~a~aw~~lv-~---a~~~~~R~~av 106 (131)
T PF14530_consen 70 TDPASAAALAAALEDDCAAAWRALV-A---ATDPALRRFAV 106 (131)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHH-H-----SHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-h---cCChhHHHHHH
Confidence 4688999999999999999999888 2 36777777765
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.99 E-value=33 Score=36.95 Aligned_cols=58 Identities=17% Similarity=0.090 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026369 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (239)
Q Consensus 95 ~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RG 156 (239)
..++|.-.|..|-.+...|..++..-++. ....++|...++||++|...|-+.+....
T Consensus 942 ~~~al~lAm~~Ekdai~fY~~la~~~~d~----e~~k~l~~~LA~EEk~Hl~~L~~~~d~~~ 999 (1006)
T PRK12775 942 PGNLFRIAIEFERRAVKFFKERVAETPDG----SVERQLYKELAAEEREHVALLTTEFERWK 999 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999987732 23578999999999999999998877643
No 63
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=60.57 E-value=58 Score=24.85 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhhh
Q 026369 179 ALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLIC 237 (239)
Q Consensus 179 ~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~~ 237 (239)
.++.+...+.........|....+.+ .|+.+..+|+ .+..+....+..|..+|..
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~~---~~~~lk~~f~-~~~~~~~~~~~~L~~~i~~ 56 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEKA---EDPELKSLFQ-EFAQERQQHAEELQAEIQE 56 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----SHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888777665 5899999998 8998888888888887764
No 64
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=60.47 E-value=1.2e+02 Score=27.09 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026369 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (239)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLikY~n~RG 156 (239)
....+..||++.+.=|.+.|.+|.+.-..-+
T Consensus 20 ~~~el~~fl~ERa~IEe~Yak~L~klak~~~ 50 (233)
T cd07649 20 MQKEMAEFIRERIKIEEEYAKNLSKLSQSSL 50 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3556999999999999999999999975433
No 65
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=59.12 E-value=1.1e+02 Score=26.84 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=27.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026369 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (239)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLikY~n~RGG 157 (239)
-+..+..||++.|.=|.++|.+|-+.-.+-++
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLakk~~~ 51 (236)
T cd07651 20 TLEELRSFYKERASIEEEYAKRLEKLSRKSLG 51 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 46779999999999999999999998776654
No 66
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=55.83 E-value=98 Score=24.27 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (239)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n 153 (239)
..++.-.+..|-.+...|..++.. -..+.....+|++|...|.+.+.
T Consensus 78 ~~~l~~~~~~E~~ai~~Y~~~~~~-----------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 78 TFVLKLLERGEERAIEKYDRLLEE-----------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHHHHhHHhhHhhHHhhhhh-----------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777788999999999988776 23668899999999999988763
No 67
>PRK13456 DNA protection protein DPS; Provisional
Probab=55.72 E-value=1.2e+02 Score=26.61 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (239)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n 153 (239)
.+.+.|.+.+..|-.|.-.|..+--++. +.+--...-. ...-.+|.+|+..|.+++.
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~--~kDp~T~~l~-~~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTA--GKDPRTYDLA-LAILQEEIEHEAWFSELLG 163 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999998 3344444333 3477789999999999985
No 68
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.08 E-value=1.2e+02 Score=26.69 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=26.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026369 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (239)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLikY~n~R 155 (239)
-...|+.||++.|.-|.++|.+|-+.-..-
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLak~~ 49 (239)
T cd07647 20 MCKELEDFLKQRAKAEEDYGKALLKLSKSA 49 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456799999999999999999999987653
No 69
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=53.06 E-value=1.6e+02 Score=26.03 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=28.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 026369 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (239)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~ 158 (239)
-..-|++||++.|.-|.++|..|.+...+-.+.
T Consensus 20 ~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~ 52 (261)
T cd07648 20 AVKELADFLRERATIEETYSKALNKLAKQASNS 52 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345699999999999999999999988776553
No 70
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=51.99 E-value=85 Score=25.58 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n 153 (239)
..+.+.|...+..|-.++..|..+...+. ..+=++...||.....+|-+|+..|-.++.
T Consensus 81 ~~~~e~l~~~l~~E~~~~~~~~e~i~~A~--~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 81 ETVREMLEADLALELDVLNRLKEAIAYAE--EVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999998887 456789999999999999999998887765
No 71
>PF13668 Ferritin_2: Ferritin-like domain
Probab=46.53 E-value=1.1e+02 Score=24.21 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hhCCChhHHHhhHHhhHHHHHHHHHHhhhhh
Q 026369 180 LYAMELALSLEKLTNEKLLSLHSVA-----DRNNDPQMAEFVESEFLGEQVSFDLDSSSVL 235 (239)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~~A-----~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L 235 (239)
++++..||.+|..-.+-|.....-. ....|..+.++++ .+..+...-++.+.+.|
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~E~~H~~~l~~~l 62 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQ-EIADQEQGHVDFLQAAL 62 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 5789999999999999999888744 3468999999998 88888888888887776
No 72
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=44.22 E-value=1.5e+02 Score=24.68 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=51.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026369 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (239)
Q Consensus 90 ~~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~R 155 (239)
.++.++...|...|..|-.|.-.|..++...+ | |++-.-+.....+|..|.+.|-+.+...
T Consensus 95 ~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--D---p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 95 QSSGNLVADLRSNIAAESRARLTYERLYEMTD--D---PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667888899999999999999999999887 3 5666667778889999999999888654
No 73
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.10 E-value=2.4e+02 Score=25.26 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 127 LRGLAKFFKESSEEEREHAEKFMEYQN 153 (239)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLikY~n 153 (239)
-.-|+.||++.|.=|.+||..|.+.-.
T Consensus 21 ~kel~~flkeRa~IEe~Yak~L~klak 47 (261)
T cd07674 21 TKELADFVRERAAIEETYSKSMSKLSK 47 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345999999999999999999988874
No 74
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=41.62 E-value=1.6e+02 Score=26.19 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026369 127 LRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (239)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLikY~n~R 155 (239)
...+..||++.|.-|.+.|..|.+.-.+.
T Consensus 21 ckel~~f~kERa~IE~~YAK~L~kLa~k~ 49 (239)
T cd07658 21 CKELATVLQERAELELNYAKGLSKLSGKL 49 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999987653
No 75
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=40.54 E-value=1.6e+02 Score=26.11 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=28.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 026369 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (239)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v 159 (239)
....|++||++.+.=|.+||..|.+....-.+.+
T Consensus 20 ~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~ 53 (234)
T cd07652 20 SAKEFATFLKKRAAIEEEHARGLKKLARTTLDTY 53 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567999999999999999999999776655433
No 76
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=40.01 E-value=61 Score=27.94 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026369 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (239)
Q Consensus 96 e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RG 156 (239)
-..|++.-..+=.+.-.+.-|+..+. ..|++-+..|+.....-|.+|-+-++.||...+
T Consensus 77 A~~ld~~AAl~SaSWG~fQIMGfn~~--~~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 77 ARALDEEAALESASWGLFQIMGFNWK--ALGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHhhCHHHHHHHhhhhHHHHHHHHHH--HcCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 45677777888888889999999999 679999999999999999999999999999855
No 77
>PRK10304 ferritin; Provisional
Probab=39.69 E-value=2.1e+02 Score=24.04 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026369 94 ECEAAINEQINVEYNVSYVYHALYAYFDRD-NIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (239)
Q Consensus 94 e~e~aLNeQIn~El~ASy~YlsmAa~fdrd-~v~L~GfAkfF~~~S~EEreHAekLikY~n~RG 156 (239)
.+.+.+...+..|..++-.|..+...+... |..-..|=.||.+.=.||-.|+..|++.+..-|
T Consensus 82 s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~~~ 145 (165)
T PRK10304 82 SLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAG 145 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 468899999999999999999999988852 223333444555555558889999999887765
No 78
>PF04611 AalphaY_MDB: Mating type protein A alpha Y mating type dependent binding region ; InterPro: IPR007689 Mating-type protein A-alpha specifies the A-alpha-Y mating type. The A-alpha-Y protein binds to the AalphaZ protein of another mating type in Schizophyllum commune [] and may also regulate gene expression of the homokaryotic cell.; GO: 0006355 regulation of transcription, DNA-dependent, 0019953 sexual reproduction
Probab=33.64 E-value=2.8e+02 Score=23.14 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCcccccCCCCCCCCCC
Q 026369 143 EHAEKFMEYQNLRGGKVKLHSIMQPPSEFD 172 (239)
Q Consensus 143 eHAekLikY~n~RGG~v~l~~I~~P~~~f~ 172 (239)
.||..++.|-..||+.+...+++.....|+
T Consensus 13 a~Ak~m~~~A~sRGa~~~p~~~~~t~v~fd 42 (147)
T PF04611_consen 13 ANAKDMMSIARSRGAYPIPSPQPTTTVHFD 42 (147)
T ss_pred HhHHHHHHHHHHcCCCCCCCCCCCCCCccC
Confidence 489999999999999877555554433343
No 79
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=31.15 E-value=2e+02 Score=22.62 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 026369 106 EYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (239)
Q Consensus 106 El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RG 156 (239)
|..|...|..=+..-.. +.+-+-+.+.-+||.+||-.+++++....
T Consensus 29 EiEA~~wY~qR~~~tKD-----~~~r~ImehnrdeE~eHa~mlLEwlrR~~ 74 (103)
T COG3461 29 EIEAMMWYDQRADATKD-----EDLRAIMEHNRDEEKEHAAMLLEWLRRHD 74 (103)
T ss_pred HHHHHHHHHHHhhcccc-----HhHHHHHHHcccHHHHHHHHHHHHHHHcC
Confidence 66666677765554442 34667778888999999999999997644
No 80
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=30.79 E-value=2e+02 Score=20.59 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 127 LRGLAKFFKESSEEEREHAEKFMEYQNL 154 (239)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLikY~n~ 154 (239)
+.-+.+||++.+.=|.+||.+|-+-..+
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4559999999999999999999998776
No 81
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=30.55 E-value=1e+02 Score=22.09 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=26.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026369 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (239)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLikY~n~RGG 157 (239)
-+..+..||++.+.-|.++|..|-+.-..-..
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~~ 55 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLAKKFKK 55 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35679999999999999999999887766543
No 82
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=29.87 E-value=2.2e+02 Score=27.04 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=47.6
Q ss_pred hcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHH
Q 026369 119 YFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLL 198 (239)
Q Consensus 119 ~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~ 198 (239)
+|.+.+ -++|++.-++-.+-+|.-|..-.+..++..-. ..|.. |+..-...+.++++.|+++|+.....+.
T Consensus 227 ~l~r~g-~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~-------e~p~~-~~~~~~~~v~~l~~eav~~E~~~~~~~~ 297 (369)
T PRK07209 227 SLGRQN-KMTGIAEQYQYILRDESMHLNFGIDLINQIKL-------ENPHL-WTAEFQAEIRELIKEAVELEYRYARDTM 297 (369)
T ss_pred HhhhcC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445544 69999999999999999999766665554321 11211 1111113578999999999998666443
No 83
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=27.23 E-value=2.5e+02 Score=26.09 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=53.4
Q ss_pred HhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHH
Q 026369 118 AYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKL 197 (239)
Q Consensus 118 a~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l 197 (239)
.+|.+.+ .++|+++-++-.+-+|--|..- .-++...+ .-....+..+. + ...+.+++..|.++|++-...+
T Consensus 175 ~~l~~~~-km~g~~~~i~~I~RDE~lH~~f-~~~l~~~~-~~~~~~~~~~~--~----~~~i~~l~~~av~~E~e~~~~~ 245 (324)
T PRK13966 175 MYWSSRA-KLTNTADMIRLIIRDEAVHGYY-IGYKFQRG-LALVDDVTRAE--L----KDYTYELLFELYDNEVEYTQDL 245 (324)
T ss_pred HHHhhcC-CCCcHHHHHHHHHHhHHHHHHH-HHHHHHHH-HHhCChhhHHH--H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3454544 7999999999999999999944 44444322 10111111111 0 0235799999999999988877
Q ss_pred HHHHHHHhhCCChhHHHhhH
Q 026369 198 LSLHSVADRNNDPQMAEFVE 217 (239)
Q Consensus 198 ~~L~~~A~~~~D~~t~~FLe 217 (239)
..+..+ ++ .+.+|++
T Consensus 246 ~~~~Gl----~~-~v~~Yi~ 260 (324)
T PRK13966 246 YDEVGL----TE-DVKKFLR 260 (324)
T ss_pred HhcCCC----hH-HHHHHHH
Confidence 644322 22 4677776
No 84
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=27.15 E-value=4.3e+02 Score=23.11 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCC
Q 026369 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (239)
Q Consensus 98 aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~ 169 (239)
.|-++...|+.|..+-+.+-.-+. +-..+-.-+-..+.||.+|-+...+.+..|| +.+-+|++|..
T Consensus 32 lLlDH~~CE~KAa~tAl~li~kY~----~~~~lv~km~~larEEL~HFeqV~eilq~Rn--I~~~~i~asrY 97 (203)
T COG4445 32 LLLDHLHCELKAAQTALNLIRKYP----SNTDLVDKMVLLAREELHHFEQVLEILQARN--IPYVPIPASRY 97 (203)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccccCCccHH
Confidence 456778889999887664433332 2244666677789999999999999999999 66667777653
No 85
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=27.14 E-value=8.4e+02 Score=26.51 Aligned_cols=124 Identities=23% Similarity=0.251 Sum_probs=84.9
Q ss_pred ccccch----HHhHHHHh---cCCCCcchhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHH
Q 026369 63 VVFQPF----EEVKKEVL---DVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFK 135 (239)
Q Consensus 63 ~~~~p~----~e~~~~~~---~~~~~~~~s~aRq~~s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~ 135 (239)
.|||-. ||||.-+. .-|+-|-.|..|.+ +.-.|.+-+-..-..+|+++.++-|..-..+...
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 628 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDH----LVYRLHESLYKHRREALVFMLLALWIAPEKISSR------- 628 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch-------
Confidence 466643 56776443 34677777776655 5566677777788899999999999886654433
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhH
Q 026369 136 ESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212 (239)
Q Consensus 136 ~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t 212 (239)
|-++|++.+..+-...-+..+...+..|.+ ..|+.-|+..--.+--|.++.+-+-+.+|+..
T Consensus 629 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (932)
T PRK13184 629 --------EEEKFLEILYHKQQATLFCQLDKTPLQFRS-------SKMELFLSFWSGFTPFLPELFQRAWDLRDYRA 690 (932)
T ss_pred --------HHHHHHHHHHhhccCCceeeccCchhhhhh-------hhHHHHHHHHhcCchhhHHHHHHHhhcccHHH
Confidence 455666666665555555556555554433 45888888888888888888888888888743
No 86
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=25.46 E-value=5.2e+02 Score=23.54 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCc--cch------------------------------------hHHHH
Q 026369 93 DECEAAINEQINVEYNVSYVYHAL-YAYFDRDNI--ALR------------------------------------GLAKF 133 (239)
Q Consensus 93 ~e~e~aLNeQIn~El~ASy~Ylsm-Aa~fdrd~v--~L~------------------------------------GfAkf 133 (239)
......|-++.|.|.-|+..=++| ..|....+- .|- .+..-
T Consensus 26 ~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~ 105 (240)
T PF06175_consen 26 ANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDK 105 (240)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 456778999999999999888766 555422111 122 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q 026369 134 FKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (239)
Q Consensus 134 F~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~ 168 (239)
+-..+.||+.|=+..++-+.+|| +.++.+.+++
T Consensus 106 Ms~LarEEL~HFeqVl~im~~RG--i~l~~~~~d~ 138 (240)
T PF06175_consen 106 MSRLAREELHHFEQVLEIMKKRG--IPLGPDRKDR 138 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CCCCCCCcCH
Confidence 44568999999999999999999 5556655543
No 87
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=25.22 E-value=6.2e+02 Score=24.34 Aligned_cols=122 Identities=14% Similarity=0.159 Sum_probs=95.2
Q ss_pred hccHH----HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCC
Q 026369 90 KYEDE----CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM 165 (239)
Q Consensus 90 ~~s~e----~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~ 165 (239)
+++++ .++-|-.-...|+.--..|--|+--.+.. =|-++..|.-.|-+|-.||=-|=+=+.+-|-.++++-+.
T Consensus 75 ~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~---nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLt 151 (355)
T PRK13654 75 HLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR---NPLLAELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLT 151 (355)
T ss_pred hCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc---CcHHHHHHHHHhhhHHHHhhhHHHHHHHcCccccchhhc
Confidence 35555 68888899999999999999999998843 488999999999999999999999999999999988776
Q ss_pred CCCC-CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh---HHHhhHHh
Q 026369 166 QPPS-EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQ---MAEFVESE 219 (239)
Q Consensus 166 ~P~~-~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~---t~~FLe~~ 219 (239)
+-+. -|-. +.=++-...-.||--.-+|-.+++.=+++-|.. +.+|+|+|
T Consensus 152 k~k~YTfF~-----PkfIfYatYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~W 204 (355)
T PRK13654 152 KKKKYTFFP-----PKFIFYATYLSEKIGYWRYITIYRHLEKHPEHRFHPIFKFFENW 204 (355)
T ss_pred cCCceeeeC-----cceeeehhHhHhhhhHHHHHHHHHHHHhCcccccCchHHHHHHH
Confidence 6432 1111 223455577889999999999999888776654 45555544
No 88
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=24.74 E-value=5e+02 Score=23.14 Aligned_cols=32 Identities=13% Similarity=0.393 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 026369 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (239)
Q Consensus 127 L~GfAkfF~~~S~EEreHAekLikY~n~RGG~ 158 (239)
..-|..||++.+.=|.++|.+|.+...+-+|.
T Consensus 21 c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~ 52 (242)
T cd07671 21 CKDVEELLKQRAQAEERYGKELVQIARKAGGQ 52 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 44589999999999999999999999887763
No 89
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=24.59 E-value=2.5e+02 Score=25.76 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=47.7
Q ss_pred hcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccccCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHH
Q 026369 119 YFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR-GGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKL 197 (239)
Q Consensus 119 ~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~R-GG~v~l~~I~~P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l 197 (239)
+|.+.+ -++|++.-++..+-+|--|..-...-++.. ...+ .+..+.. ...+.+++..|+++|+.....+
T Consensus 177 ~l~~~g-~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---~~~~~~~------~~~v~~l~~~ave~E~~~~~~~ 246 (324)
T PRK09614 177 YLARQG-KMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELP---ELEQEEL------KDEIYDLLYELYENEEAYTELL 246 (324)
T ss_pred HHHhCC-CcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCC---HhhhHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455534 699999999999999999987665444321 1111 1111110 1347789999999999988877
Q ss_pred HH
Q 026369 198 LS 199 (239)
Q Consensus 198 ~~ 199 (239)
..
T Consensus 247 ~~ 248 (324)
T PRK09614 247 YD 248 (324)
T ss_pred HC
Confidence 76
No 90
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=23.67 E-value=3.7e+02 Score=21.17 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=55.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc---cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC
Q 026369 88 RQKYEDECEAAINEQINVEYNVSYVYHALYAY-FD---RDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS 163 (239)
Q Consensus 88 Rq~~s~e~e~aLNeQIn~El~ASy~YlsmAa~-fd---rd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~ 163 (239)
...........||.+++.|....|.=.--..| |+ ..++.+.-|+.||.-.-.=..---+.|-.|+..+|+.-....
T Consensus 24 ~~~~~~~a~~~ln~~w~~~V~~~~~~~i~gRYPF~~~s~~dv~l~Df~~fF~p~G~ld~F~~~~L~~fvd~~~~~w~~~~ 103 (125)
T PF06744_consen 24 WKLVLQGARSYLNKAWQAEVYPFCRQAIAGRYPFDPDSSRDVSLADFARFFGPGGVLDQFFNQYLKPFVDTSGNPWRWRP 103 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCcceeCC
Confidence 33445677888888888886555432111122 33 457999999999999888888888899999999998766655
Q ss_pred CC
Q 026369 164 IM 165 (239)
Q Consensus 164 I~ 165 (239)
..
T Consensus 104 ~~ 105 (125)
T PF06744_consen 104 GD 105 (125)
T ss_pred CC
Confidence 44
No 91
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.18 E-value=5.9e+02 Score=23.40 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q 026369 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (239)
Q Consensus 92 s~e~e~aLNeQIn~El~ASy~YlsmAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v~l~~I~~P~ 168 (239)
...-.+.|.---+.|++|.+.=+-.++-|. ++.+.-+-.|++ -+.||-.|=.-+-+++...| .+.++.++..
T Consensus 73 ~~g~aallHAiAHIEfNAInLaLDa~~RF~--~~p~~F~~dWm~-VA~EE~~HF~Ll~~~L~~LG--~~YGDfpaHd 144 (268)
T COG2833 73 THGRAALLHAIAHIEFNAINLALDAVYRFA--PLPLQFYDDWMR-VADEEAKHFRLLRERLKSLG--YDYGDFPAHD 144 (268)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhc--CCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC--CCcCCCcccc
Confidence 445577788888999999999999999999 677776666654 48999999999999999999 5556655543
No 92
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.74 E-value=1.8e+02 Score=19.83 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=25.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026369 126 ALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (239)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLikY~n~ 154 (239)
-+||.+..+...++.|.+|-..+-+-.++
T Consensus 12 i~Pg~aerI~~mae~eq~hR~~~e~~~l~ 40 (50)
T PF10097_consen 12 ILPGAAERIFAMAEKEQEHRHELEKKALK 40 (50)
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988665544
No 93
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=22.11 E-value=4.4e+02 Score=21.48 Aligned_cols=53 Identities=21% Similarity=0.158 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CChhHHHhhHHhhHHHHHHHHHH
Q 026369 178 DALYAMELALSLEKLTNEKLLSLHSVADRN--NDPQMAEFVESEFLGEQVSFDLD 230 (239)
Q Consensus 178 ~~lea~e~AL~lEk~vt~~l~~L~~~A~~~--~D~~t~~FLe~~FLeEQve~Ik~ 230 (239)
.+.+++...+..|-.....|..+...|... +-+.+++|+...-.+|.-..++-
T Consensus 3 ~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l 57 (161)
T cd01056 3 ECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKL 57 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999987 88999888875444444444333
No 94
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=21.99 E-value=5.7e+02 Score=22.77 Aligned_cols=30 Identities=13% Similarity=0.335 Sum_probs=26.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 026369 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (239)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLikY~n~R 155 (239)
-..-+..||++.|.=|.+.|.+|.+.-.+-
T Consensus 20 ~~~el~~f~kERA~IE~~YaK~L~kLskk~ 49 (240)
T cd07672 20 NCKEFEDFLKERASIEEKYGKELLNLSKKK 49 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456699999999999999999999988753
No 95
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=21.77 E-value=7.2e+02 Score=23.85 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=50.4
Q ss_pred HHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcccccCCCCCCCCCCccccCCHHHHHHHHHHHHHHH
Q 026369 115 ALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL-RGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLT 193 (239)
Q Consensus 115 smAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~-RGG~v~l~~I~~P~~~f~~~e~g~~lea~e~AL~lEk~v 193 (239)
++-.||.+.+ -++|+++-.+-.+-+|.-|..-...-++. +...|. +..+. ....+.++++.|.++|+.-
T Consensus 257 a~~~~l~~~g-~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~---~~~~~------~~~~v~~~~~eave~E~~~ 326 (410)
T PRK12759 257 AMLLNFQRFG-KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPY---IVDNE------FKKEIYLMASKAVELEDRF 326 (410)
T ss_pred HHHHHHHhcC-CCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh---hcChH------HHHHHHHHHHHHHHHHHHH
Confidence 3334666655 49999999999999999999765544432 222222 11111 1135789999999999998
Q ss_pred HHHHHH
Q 026369 194 NEKLLS 199 (239)
Q Consensus 194 t~~l~~ 199 (239)
...+..
T Consensus 327 ~~~~~~ 332 (410)
T PRK12759 327 IELAYE 332 (410)
T ss_pred HHHHcC
Confidence 886553
No 96
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=21.37 E-value=5.5e+02 Score=22.31 Aligned_cols=45 Identities=24% Similarity=0.120 Sum_probs=33.0
Q ss_pred HHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 026369 115 ALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (239)
Q Consensus 115 smAa~fdrd~v~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v 159 (239)
.+..+.+..---+..|..||++.|.=|.++|.+|-+....-.+..
T Consensus 9 ~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~ 53 (251)
T cd07653 9 NLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKK 53 (251)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444433334677999999999999999999999887655444
No 97
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=21.07 E-value=6e+02 Score=22.65 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 026369 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (239)
Q Consensus 126 ~L~GfAkfF~~~S~EEreHAekLikY~n~RGG~v 159 (239)
-+..+..||++.|.-|.++|.+|-+...+-.+.+
T Consensus 20 ~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~ 53 (258)
T cd07655 20 LCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLI 53 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567999999999999999999999988766544
No 98
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=20.79 E-value=4.9e+02 Score=21.57 Aligned_cols=48 Identities=21% Similarity=0.101 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHH---HHHHHHHHh
Q 026369 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLG---EQVSFDLDS 231 (239)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLe---EQve~Ik~l 231 (239)
++-++.++..|+...+.+..+.+. .++|.+.+-|+. =++ .|++.++.+
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~~~---a~~peLk~~l~~-H~~eT~~qi~rLe~i 55 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAKA---ATSEELKEAFES-HLEETEGQVERLEQI 55 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 567889999999999999988744 489999999984 454 455555443
No 99
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=20.43 E-value=3e+02 Score=19.01 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHHhhHHHHHHHHHHhhhhhh
Q 026369 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVSFDLDSSSVLI 236 (239)
Q Consensus 180 lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~~FLeEQve~Ik~l~d~L~ 236 (239)
.+++...|..+|.....+...+ .+..+|.++++|. .-+.+.++.-.++-+++.
T Consensus 3 ~~i~~d~L~~~K~~~~~y~~a~---~E~~np~lR~~l~-~~~~~~~~~~~~l~~~m~ 55 (64)
T PF07875_consen 3 KDIANDLLNSEKAAARNYATAA---LECANPELRQILQ-QILNECQQMQYELFNYMN 55 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3567888999999988887666 4458999999998 677777777666666553
No 100
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=20.41 E-value=4.2e+02 Score=21.99 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCcccccCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHhhHH
Q 026369 146 EKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVES 218 (239)
Q Consensus 146 ekLikY~n~RGG~v~l~~I~~P~~~f~~~e~g~~lea~e~AL~lEk~vt~~l~~L~~~A~~~~D~~t~~FLe~ 218 (239)
.+|.+|+...-..+.+.+++.+...|+. ++....-+....+|+- |..+...-.=..|..+..|||+
T Consensus 74 ~~L~~~L~~~~~~~iVPplP~k~~~~~~---~~~E~~~~rr~~Lqrf----L~RV~~hP~L~~d~~l~~FLEs 139 (140)
T cd06891 74 QKLFKYLNGANPETFVPALPLPSTSYGS---NNEEDARKLKANLQRW----FNRVCSDPILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHHCCCcEeCCCCCccccCCC---CCHHHHHHHHHHHHHH----HHHHhCChhhccCHHHHHHhcc
Confidence 3455666666555677777777665432 3443333333444432 2223333333689999999874
Done!