BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026370
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
Length = 243
Score = 183 bits (465), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 90/158 (56%), Positives = 118/158 (74%), Gaps = 3/158 (1%)
Query: 81 NGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140
N MS+ SY+ R+LLK+SGEAL GD IDPK+ +A EV + G +VA+V+GGGN
Sbjct: 2 NAMSELSYR--RILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGN 59
Query: 141 IFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI 200
IFRGA A SG+DR + D++GMLATV+NA+ +Q +E +G RV +A ++++V E +I
Sbjct: 60 IFRGAGLAA-SGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFI 118
Query: 201 RRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 238
RRRA+RHLEKGR+ IFAAGTGNPFFTTD+ AALR EI
Sbjct: 119 RRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEI 156
>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|B Chain B, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|C Chain C, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
Length = 252
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 109/151 (72%), Gaps = 1/151 (0%)
Query: 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 148
K+QR+L+K+SGEALAG+ ID AIA+E+A V G+++A+V+GGGN++RG AA
Sbjct: 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAA 65
Query: 149 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 208
++G DR ADY G L TV NA+ +++ G+ TRVQTA VAEPYIR RA+RHL
Sbjct: 66 -DAGXDRVQADYTGXLGTVXNALVXADSLQHYGVDTRVQTAIPXQNVAEPYIRGRALRHL 124
Query: 209 EKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239
EK R+V+F AG G+P+F+TDT AALR AEI
Sbjct: 125 EKNRIVVFGAGIGSPYFSTDTTAALRAAEIE 155
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/149 (54%), Positives = 105/149 (70%), Gaps = 2/149 (1%)
Query: 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 149
+ RVLLK+ GE G +DP + +AR++A V R G+++A+V+GGGN FRGA
Sbjct: 50 YSRVLLKLGGEMFGGGQV-GLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ- 107
Query: 150 NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 209
G++R+ +DY+GML TVMN++ LQ +E GI TRVQTA M +VAEPY+ RAVRHLE
Sbjct: 108 QLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLE 167
Query: 210 KGRVVIFAAGTGNPFFTTDTAAALRCAEI 238
KGRVVIF AG G P+F+TDT AA R EI
Sbjct: 168 KGRVVIFGAGMGLPYFSTDTTAAQRALEI 196
>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7W|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|C Chain C, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|D Chain D, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|E Chain E, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|F Chain F, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
Length = 240
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 111/150 (74%)
Query: 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 148
K +RVL+K SGEALAGD+ ID + IA+E+ S+ IEV IV+GGGNI RG SAA
Sbjct: 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAA 65
Query: 149 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 208
+ R+S DY+GMLATV+NA+ +Q +E IG+ TRVQ+A + E+ E YI R+A+RHL
Sbjct: 66 QGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHL 125
Query: 209 EKGRVVIFAAGTGNPFFTTDTAAALRCAEI 238
EKGRVVIF AGTGNPFFTTDTAA LR EI
Sbjct: 126 EKGRVVIFGAGTGNPFFTTDTAATLRAIEI 155
>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase
pdb|2A1F|B Chain B, Crystal Structure Of Uridylate Kinase
pdb|2A1F|C Chain C, Crystal Structure Of Uridylate Kinase
pdb|2A1F|D Chain D, Crystal Structure Of Uridylate Kinase
pdb|2A1F|E Chain E, Crystal Structure Of Uridylate Kinase
pdb|2A1F|F Chain F, Crystal Structure Of Uridylate Kinase
Length = 247
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 108/157 (68%), Gaps = 3/157 (1%)
Query: 83 MSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 142
+S+P YK R+LLK+SGEAL G+ IDP I +A E+ + +G+EV++V+GGGN+F
Sbjct: 3 LSQPIYK--RILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLF 60
Query: 143 RGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR 202
RGA A +G++R D++GMLATVMN + ++ ++ + ++ +AF+++ + + Y
Sbjct: 61 RGAKLA-KAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWS 119
Query: 203 RAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239
A++ L + RVVIF+AGTGNPFFTTD+ A LR EI
Sbjct: 120 EAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIE 156
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|B Chain B, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|C Chain C, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
Length = 239
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Query: 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 148
K++RVLLK+SGE+L G I+ + E+A V + G++V IVVGGGNIFRG SA
Sbjct: 6 KYKRVLLKLSGESLXGSDPFGINHDTIVQTVGEIAEVVKXGVQVGIVVGGGNIFRGVSAQ 65
Query: 149 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 208
S DR++ADY G ATV NA+ L+ E++GI RVQ+A ++AE Y R +A+++L
Sbjct: 66 AGS-XDRATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETYARPKAIQYL 124
Query: 209 EKGRVVIFAAGTGNPFFTTDTAAALRCAE 237
E+G+VVIFAAGTGNPFFTTDTAAALR AE
Sbjct: 125 EEGKVVIFAAGTGNPFFTTDTAAALRGAE 153
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp
pdb|2BND|B Chain B, The Structure Of E.Coli Ump Kinase In Complex With Udp
Length = 241
Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 100/156 (64%), Gaps = 3/156 (1%)
Query: 84 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143
+KP YK R+LLK+SGEAL G ID I +A+E+ + LGI+V +V+GGGN+FR
Sbjct: 5 AKPVYK--RILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFR 62
Query: 144 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 203
GA A +G++R D++GMLATVMN + ++ + + R+ +A ++ V + Y
Sbjct: 63 GAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNAVCDSYSWAE 121
Query: 204 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239
A+ L RVVI +AGTGNPFFTTD+AA LR EI
Sbjct: 122 AISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIE 157
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2BNE|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2V4Y|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|C Chain C, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|D Chain D, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|E Chain E, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|F Chain F, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
Length = 241
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 100/156 (64%), Gaps = 3/156 (1%)
Query: 84 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143
+KP YK R+LLK+SGEAL G ID I +A+E+ + LGI+V +V+GGGN+FR
Sbjct: 5 AKPVYK--RILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFR 62
Query: 144 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 203
GA A +G++R D++GMLATVMN + ++ + + R+ +A ++ V + Y
Sbjct: 63 GAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAE 121
Query: 204 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239
A+ L RVVI +AGTGNPFFTTD+AA LR EI
Sbjct: 122 AISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIE 157
>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|B Chain B, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|C Chain C, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
Length = 255
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG 149
++RVL+K+SG ALA + + K IA E+ S+ LGIEV+IV+GGGNIFRG A
Sbjct: 12 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRG-HLAE 70
Query: 150 NSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHL 208
G+DR AD IG L T++N++ L+ + S RV T+ + VAEPYIR RAV HL
Sbjct: 71 EWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHL 130
Query: 209 EKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239
+ G +VIF G G PF TTD + R E++
Sbjct: 131 DNGYIVIFGGGNGQPFVTTDYPSVQRAIEMN 161
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp
pdb|2BNF|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Utp
Length = 241
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 84 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 143
+KP YK R+LLK+SGEAL G ID I A+E+ + LGI+V +V+GGGN+FR
Sbjct: 5 AKPVYK--RILLKLSGEALQGTEGFGIDASILDRXAQEIKELVELGIQVGVVIGGGNLFR 62
Query: 144 GASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR 203
GA A +G +R D+ G LATV N + + + + R+ +A ++ V + Y
Sbjct: 63 GAGLA-KAGXNRVVGDHXGXLATVXNGLAXRDALHRAYVNARLXSAIPLNGVCDSYSWAE 121
Query: 204 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239
A+ L RVVI +AGTGNPFFTTD+AA LR EI
Sbjct: 122 AISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIE 157
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN 150
QR+++K+SG L + + ID +A ++ +++ I V+IV+GGGNI+RG S A
Sbjct: 25 QRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYI-VSIVLGGGNIWRG-SIAKE 82
Query: 151 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 210
+DR+ AD +GM+AT++N + L+ + + + T V +A + ++ + +EK
Sbjct: 83 LDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEK 142
Query: 211 GRVVIFAAGTGNPFFTTDTAAALRCAE 237
+V+IF AGTG P+FTTD+ AA+R AE
Sbjct: 143 EQVMIFVAGTGFPYFTTDSCAAIRAAE 169
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN 150
R++ + G L +N D IA ++ V+ EVA+VVGGG + R A
Sbjct: 4 RIVFDIGGSVLV---PENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEK 59
Query: 151 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 210
+ D+IG+ T NA+ L A + P V E + L+K
Sbjct: 60 FNSSETFKDFIGIQITRANAMLLIAALREKAYPV----------VVEDFWEAWKAVQLKK 109
Query: 211 GRVVIFAAGTGNPFFTTDTAAAL 233
I G +P TTD AAL
Sbjct: 110 ----IPVMGGTHPGHTTDAVAAL 128
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN 150
R++ + G L +N D IA ++ V+ EVA+VVGGG + R A
Sbjct: 21 RIVFDIGGSVLV---PENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEK 76
Query: 151 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 210
+ D+IG+ T NA+ L A + P V E + L+K
Sbjct: 77 FNSSETFKDFIGIQITRANAMLLIAALREKAYPV----------VVEDFWEAWKAVQLKK 126
Query: 211 GRVVIFAAGTGNPFFTTDTAAAL 233
I G +P TTD AAL
Sbjct: 127 ----IPVMGGTHPGHTTDAVAAL 145
>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
pdb|2IJ9|B Chain B, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
Length = 219
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 27/145 (18%)
Query: 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN 150
+V+L + G L+ + + A+ + SV + +V +VVGGG + R +A
Sbjct: 2 KVVLSLGGSVLSNESEK------IREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARE 54
Query: 151 SGLDRSSADYIGMLATVMNAIFLQATMESIG--IPTRVQTAFRMSEVAEPYIRRRAVRHL 208
G + DYIG+ AT +NA+ L + + S +P A +S++
Sbjct: 55 LGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFMEAEELSKLY------------ 102
Query: 209 EKGRVVIFAAGTGNPFFTTDTAAAL 233
RVV+ G P TTD AAL
Sbjct: 103 ---RVVVM--GGTFPGHTTDATAAL 122
>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4K|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4L|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|G Chain G, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|H Chain H, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|I Chain I, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|J Chain J, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|K Chain K, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|L Chain L, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
Length = 226
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGNS 151
++LK+SG+ D+ N+ + + + + + G V IV GGG+ R A
Sbjct: 3 IILKISGKFFDEDNVDNL-----IVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREI 57
Query: 152 GLDRSSADYIGMLATVMNAIFLQATMESI 180
G+ + D +G+ A+ +NA + +++ +
Sbjct: 58 GIGEAYLDLLGIWASRLNAYLVMFSLQDL 86
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 30.8 bits (68), Expect = 0.66, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 139 GNIFRGASAAGNSGLDRSSADYIGMLATVMN-AIFLQATMESIGIPTRVQTAFRMS 193
G + A AG GLD + + + ++ A F + TM G+PTR+Q+ FR++
Sbjct: 465 GEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM---GVPTRLQSQFRLT 517
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 120 REVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIG--MLATVMNAIFLQATM 177
+V +EVA+ +G + GA G L+RS AD +ATV+ ++Q
Sbjct: 32 EQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQK 91
Query: 178 ESIGIPTRVQTA 189
+ +P V+ A
Sbjct: 92 YDLAVPLLVKVA 103
>pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|B Chain B, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|C Chain C, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|D Chain D, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|E Chain E, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|F Chain F, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|G Chain G, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|H Chain H, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
Length = 384
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 138 GGNIFRGASAAGNSGLDRSSADYIGMLATV-MNAIFLQATMESIGIPTRVQTAFRMSEVA 196
G NI R A+ SG+D + D G LA + ++ + A +++G F E A
Sbjct: 95 GANIXRAANQI-FSGIDXAXWDLQGKLAGLPVHQLLGGAHRKAVGY-----FYFLQGETA 148
Query: 197 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAA 231
E R AV H + RV G G TAA
Sbjct: 149 EELARDAAVGHAQGERVFYLKVGRGEKLDLEITAA 183
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 18/116 (15%)
Query: 56 SAQNPTNGRQPQMSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKIT 115
+P +P+ PF D +P W + H + P
Sbjct: 164 ECDDPVIFLEPKRLYNGPF-----DGHHDRPVTPWSK-------------HPHSAVPDGY 205
Query: 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAI 171
+ + A++TR G +V+++ G ++ AA SG+D D + ++ I
Sbjct: 206 YTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEESGVDAEVIDLRSLWPLDLDTI 261
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 18/116 (15%)
Query: 56 SAQNPTNGRQPQMSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKIT 115
+P +P+ PF D +P W + H + P
Sbjct: 165 ECDDPVIFLEPKRLYNGPF-----DGHHDRPVTPWSK-------------HPHSAVPDGY 206
Query: 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAI 171
+ + A++TR G +V+++ G ++ AA SG+D D + ++ I
Sbjct: 207 YTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEESGVDAEVIDLRSLWPLDLDTI 262
>pdb|2BE7|A Chain A, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|B Chain B, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
pdb|2BE7|C Chain C, Crystal Structure Of The Unliganded (T-State) Aspartate
Transcarbamoylase Of The Psychrophilic Bacterium
Moritella Profunda
Length = 326
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 113 KITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS---ADYIGMLATVMN 169
K+ + E ++ TRL E AI GG++ G AGN+ L + AD I ++++ +
Sbjct: 59 KVIASCFFEASTRTRLSFETAIQRLGGSVI-GFDNAGNTSLAKKGETLADSISVISSYAD 117
Query: 170 AIFLQATME 178
A ++ E
Sbjct: 118 AFVMRHPQE 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,672,633
Number of Sequences: 62578
Number of extensions: 202737
Number of successful extensions: 569
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 33
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)