Query 026370
Match_columns 239
No_of_seqs 141 out of 892
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 07:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0528 PyrH Uridylate kinase 100.0 1.5E-50 3.2E-55 360.0 17.6 150 89-239 4-153 (238)
2 PRK14556 pyrH uridylate kinase 100.0 7.9E-45 1.7E-49 325.8 17.6 151 89-239 14-164 (249)
3 PRK14557 pyrH uridylate kinase 100.0 1.7E-32 3.7E-37 244.7 17.5 150 89-239 3-153 (247)
4 TIGR02075 pyrH_bact uridylate 99.9 1.1E-26 2.4E-31 203.7 18.2 149 90-239 1-149 (233)
5 PRK14558 pyrH uridylate kinase 99.9 2E-26 4.4E-31 201.3 16.9 146 91-239 1-146 (231)
6 cd04235 AAK_CK AAK_CK: Carbama 99.9 2.3E-26 5E-31 211.9 14.7 147 92-239 1-222 (308)
7 PRK00358 pyrH uridylate kinase 99.9 2E-25 4.3E-30 194.2 17.7 148 91-239 1-148 (231)
8 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.9 1.8E-25 3.9E-30 195.6 16.2 148 91-239 1-148 (231)
9 cd04239 AAK_UMPK-like AAK_UMPK 99.9 1.6E-23 3.4E-28 182.7 16.1 146 92-239 1-146 (229)
10 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.9 3.2E-22 6.9E-27 173.8 13.9 128 92-239 1-129 (221)
11 PRK12454 carbamate kinase-like 99.9 2.2E-21 4.8E-26 179.4 15.7 148 91-239 3-226 (313)
12 TIGR02076 pyrH_arch uridylate 99.9 3.5E-21 7.6E-26 166.9 14.3 128 93-239 1-129 (221)
13 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 5.7E-21 1.2E-25 172.0 15.3 132 91-239 31-175 (262)
14 cd04240 AAK_UC AAK_UC: Unchara 99.9 2.5E-21 5.4E-26 167.8 10.0 118 94-239 1-128 (203)
15 TIGR00746 arcC carbamate kinas 99.8 2.1E-19 4.5E-24 165.8 14.9 148 91-239 1-223 (310)
16 PRK12353 putative amino acid k 99.8 6.7E-19 1.5E-23 162.2 13.8 149 90-239 2-226 (314)
17 cd04241 AAK_FomA-like AAK_FomA 99.7 5.6E-17 1.2E-21 142.7 14.3 144 92-239 1-161 (252)
18 cd02115 AAK Amino Acid Kinases 99.6 1.5E-14 3.2E-19 125.0 13.2 139 94-239 1-164 (248)
19 TIGR00656 asp_kin_monofn aspar 99.6 3.9E-14 8.5E-19 132.3 14.6 142 91-239 1-166 (401)
20 cd04246 AAK_AK-DapG-like AAK_A 99.5 1.9E-13 4.2E-18 119.8 15.5 140 93-239 2-163 (239)
21 cd04261 AAK_AKii-LysC-BS AAK_A 99.5 4.7E-13 1E-17 117.6 15.5 139 93-239 2-163 (239)
22 PRK12354 carbamate kinase; Rev 99.5 7.8E-13 1.7E-17 122.5 14.3 144 91-239 1-217 (307)
23 PRK06635 aspartate kinase; Rev 99.5 1.2E-12 2.7E-17 122.3 14.2 142 91-239 2-165 (404)
24 PTZ00489 glutamate 5-kinase; P 99.4 2.7E-12 5.9E-17 116.2 15.5 140 90-239 8-161 (264)
25 PF00696 AA_kinase: Amino acid 99.4 4E-13 8.8E-18 115.7 7.6 140 91-239 1-171 (242)
26 TIGR01027 proB glutamate 5-kin 99.4 5.3E-12 1.1E-16 118.5 15.4 142 91-239 1-157 (363)
27 PRK13402 gamma-glutamyl kinase 99.4 7.7E-12 1.7E-16 118.1 15.8 140 89-239 4-161 (368)
28 COG1608 Predicted archaeal kin 99.4 3.6E-12 7.9E-17 115.0 11.9 141 93-239 3-161 (252)
29 PRK07431 aspartate kinase; Pro 99.4 1.3E-11 2.7E-16 121.4 15.6 140 92-239 3-167 (587)
30 PRK14058 acetylglutamate/acety 99.3 1.9E-11 4.2E-16 109.6 13.3 135 92-239 1-182 (268)
31 cd04234 AAK_AK AAK_AK: Amino A 99.3 2.6E-11 5.7E-16 106.1 13.6 130 92-239 1-150 (227)
32 PRK09411 carbamate kinase; Rev 99.3 2.4E-11 5.2E-16 112.3 13.7 146 91-239 2-214 (297)
33 PRK12314 gamma-glutamyl kinase 99.3 3.9E-11 8.5E-16 108.1 14.8 144 90-239 9-168 (266)
34 cd04256 AAK_P5CS_ProBA AAK_P5C 99.3 3.2E-11 6.9E-16 110.0 14.0 146 90-239 8-192 (284)
35 cd04242 AAK_G5K_ProB AAK_G5K_P 99.3 4E-11 8.8E-16 106.4 13.6 141 92-239 1-156 (251)
36 PRK08210 aspartate kinase I; R 99.3 5.3E-11 1.1E-15 111.8 14.5 142 91-239 2-170 (403)
37 cd04260 AAK_AKi-DapG-BS AAK_AK 99.3 1E-10 2.2E-15 103.5 15.2 140 93-239 2-168 (244)
38 TIGR00761 argB acetylglutamate 99.3 5.2E-11 1.1E-15 103.8 12.7 136 92-239 1-168 (231)
39 PRK05429 gamma-glutamyl kinase 99.3 1.2E-10 2.7E-15 109.5 15.9 144 90-239 8-165 (372)
40 PRK12686 carbamate kinase; Rev 99.3 4.3E-11 9.3E-16 111.2 12.5 149 91-239 3-224 (312)
41 PRK12352 putative carbamate ki 99.3 7.3E-11 1.6E-15 109.7 13.8 148 91-239 3-228 (316)
42 COG0549 ArcC Carbamate kinase 99.3 1.3E-10 2.9E-15 107.2 15.0 149 91-239 1-225 (312)
43 PLN02512 acetylglutamate kinas 99.3 5.8E-11 1.3E-15 109.1 12.4 139 90-239 47-219 (309)
44 cd04238 AAK_NAGK-like AAK_NAGK 99.2 8.9E-11 1.9E-15 104.0 11.7 136 93-239 1-171 (256)
45 CHL00202 argB acetylglutamate 99.2 2.8E-10 6.1E-15 103.3 14.7 139 90-239 23-194 (284)
46 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.2 3.7E-10 8.1E-15 101.6 14.3 139 90-239 14-191 (279)
47 PRK00942 acetylglutamate kinas 99.2 3.2E-10 7E-15 102.1 13.4 140 90-239 23-195 (283)
48 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.2 2.1E-10 4.6E-15 101.5 12.0 136 93-239 1-169 (252)
49 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.2 3.7E-10 8.1E-15 102.4 13.2 138 90-239 18-194 (280)
50 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.2 2.6E-10 5.7E-15 101.9 11.4 131 93-239 1-178 (257)
51 PRK08841 aspartate kinase; Val 99.2 9.2E-10 2E-14 104.5 15.5 139 92-239 3-165 (392)
52 cd04252 AAK_NAGK-fArgBP AAK_NA 99.2 6.9E-10 1.5E-14 98.8 13.7 134 93-239 1-163 (248)
53 PRK05279 N-acetylglutamate syn 99.0 8.1E-09 1.7E-13 98.2 13.4 137 90-239 25-201 (441)
54 TIGR01092 P5CS delta l-pyrroli 98.9 2E-08 4.4E-13 101.7 14.9 144 90-239 7-181 (715)
55 cd04236 AAK_NAGS-Urea AAK_NAGS 98.9 2.9E-08 6.2E-13 90.6 13.7 134 90-239 35-186 (271)
56 PRK04531 acetylglutamate kinas 98.8 3.5E-08 7.7E-13 94.2 12.2 121 90-239 36-162 (398)
57 TIGR01890 N-Ac-Glu-synth amino 98.8 3.1E-08 6.7E-13 94.2 11.5 137 90-239 17-193 (429)
58 cd04245 AAK_AKiii-YclM-BS AAK_ 98.8 2.1E-07 4.5E-12 85.6 14.9 82 158-239 112-211 (288)
59 TIGR00657 asp_kinases aspartat 98.7 2.7E-07 5.8E-12 88.0 14.1 141 92-239 2-205 (441)
60 TIGR02078 AspKin_pair Pyrococc 98.7 1.6E-07 3.6E-12 87.7 12.1 133 92-239 1-193 (327)
61 PLN02418 delta-1-pyrroline-5-c 98.7 5.1E-07 1.1E-11 91.8 15.4 148 90-239 15-189 (718)
62 PRK08373 aspartate kinase; Val 98.7 4.8E-07 1E-11 85.1 14.0 140 90-239 3-203 (341)
63 PLN02825 amino-acid N-acetyltr 98.6 3.8E-07 8.1E-12 90.0 11.7 139 90-239 17-202 (515)
64 cd04258 AAK_AKiii-LysC-EC AAK_ 98.6 9.1E-07 2E-11 81.5 13.0 138 92-239 1-215 (292)
65 PRK06291 aspartate kinase; Pro 98.6 1.5E-06 3.2E-11 84.0 14.3 142 91-239 1-225 (465)
66 COG0548 ArgB Acetylglutamate k 98.5 3.2E-06 6.9E-11 77.5 15.1 140 90-239 2-176 (265)
67 cd04244 AAK_AK-LysC-like AAK_A 98.5 2.6E-06 5.6E-11 78.3 13.9 140 92-239 1-221 (298)
68 COG2054 Uncharacterized archae 98.4 4.1E-06 9E-11 73.9 10.9 118 94-239 3-130 (212)
69 COG0527 LysC Aspartokinases [A 98.2 2.8E-05 6E-10 75.7 14.0 141 92-239 3-211 (447)
70 cd04243 AAK_AK-HSDH-like AAK_A 98.0 0.00014 3.1E-09 66.9 13.4 73 167-239 125-216 (293)
71 cd04259 AAK_AK-DapDC AAK_AK-Da 98.0 0.00017 3.6E-09 66.6 13.6 141 92-239 1-218 (295)
72 cd04257 AAK_AK-HSDH AAK_AK-HSD 97.9 0.00016 3.4E-09 66.7 12.6 73 167-239 126-217 (294)
73 KOG1154 Gamma-glutamyl kinase 97.9 0.00027 5.8E-09 64.8 13.0 146 90-239 9-181 (285)
74 COG0263 ProB Glutamate 5-kinas 97.9 0.00041 8.9E-09 66.3 14.5 139 89-238 5-162 (369)
75 PRK09034 aspartate kinase; Rev 97.9 0.00026 5.7E-09 68.5 13.2 83 157-239 111-211 (454)
76 PRK09084 aspartate kinase III; 97.8 0.00033 7.1E-09 67.8 12.0 137 92-239 1-211 (448)
77 PRK09436 thrA bifunctional asp 97.0 0.0083 1.8E-07 62.4 12.1 71 167-239 128-219 (819)
78 PRK08961 bifunctional aspartat 96.9 0.0064 1.4E-07 63.3 10.7 41 91-138 8-48 (861)
79 PLN02551 aspartokinase 96.9 0.019 4.2E-07 57.1 13.3 73 167-239 174-270 (521)
80 PRK09466 metL bifunctional asp 95.9 0.13 2.8E-06 53.8 13.2 73 167-239 131-222 (810)
81 PRK05925 aspartate kinase; Pro 95.9 0.13 2.9E-06 50.1 12.2 137 92-239 3-202 (440)
82 cd04247 AAK_AK-Hom3 AAK_AK-Hom 95.8 0.13 2.7E-06 48.1 11.5 73 167-239 134-227 (306)
83 KOG2436 Acetylglutamate kinase 91.7 1.7 3.6E-05 43.8 10.4 138 91-238 95-268 (520)
84 cd06259 YdcF-like YdcF-like. Y 87.3 6.7 0.00015 31.4 9.2 106 94-212 3-118 (150)
85 TIGR01664 DNA-3'-Pase DNA 3'-p 84.8 22 0.00048 29.8 12.6 128 89-235 12-154 (166)
86 PRK09181 aspartate kinase; Val 78.6 10 0.00023 37.5 8.3 70 167-239 148-232 (475)
87 PF00994 MoCF_biosynth: Probab 77.7 4.5 9.8E-05 32.7 4.7 61 168-233 17-81 (144)
88 PF02698 DUF218: DUF218 domain 74.9 30 0.00065 27.8 8.8 107 93-210 4-119 (155)
89 PLN02449 ferrochelatase 74.9 79 0.0017 31.8 13.3 60 166-231 162-223 (485)
90 cd00758 MoCF_BD MoCF_BD: molyb 69.6 14 0.0003 29.7 5.6 61 168-233 19-83 (133)
91 COG0324 MiaA tRNA delta(2)-iso 69.2 5 0.00011 37.9 3.4 85 132-221 5-102 (308)
92 PF10686 DUF2493: Protein of u 68.0 18 0.00039 26.9 5.5 53 91-154 4-59 (71)
93 PF00702 Hydrolase: haloacid d 68.0 23 0.0005 28.9 6.8 37 116-153 130-166 (215)
94 cd07018 S49_SppA_67K_type Sign 64.9 26 0.00057 30.6 6.8 89 90-189 47-138 (222)
95 smart00852 MoCF_biosynth Proba 63.7 31 0.00068 27.5 6.6 58 168-231 18-80 (135)
96 TIGR00177 molyb_syn molybdenum 61.9 30 0.00065 28.3 6.3 60 168-232 27-90 (144)
97 cd00885 cinA Competence-damage 61.7 29 0.00064 29.5 6.4 62 168-234 19-84 (170)
98 cd00886 MogA_MoaB MogA_MoaB fa 60.7 38 0.00082 27.9 6.7 61 168-233 20-86 (152)
99 TIGR01657 P-ATPase-V P-type AT 60.6 19 0.00041 38.8 6.1 37 116-153 659-695 (1054)
100 PLN02199 shikimate kinase 60.0 40 0.00086 32.0 7.5 49 110-160 84-135 (303)
101 COG0106 HisA Phosphoribosylfor 59.4 24 0.00053 32.4 5.8 124 93-222 49-201 (241)
102 PF01715 IPPT: IPP transferase 59.2 6.5 0.00014 35.6 2.1 20 202-221 47-66 (253)
103 PRK01215 competence damage-ind 58.6 30 0.00065 31.7 6.3 61 168-233 23-87 (264)
104 PRK08258 enoyl-CoA hydratase; 58.1 45 0.00097 30.0 7.3 40 108-147 39-80 (277)
105 COG0560 SerB Phosphoserine pho 57.6 24 0.00053 30.9 5.4 61 122-183 86-159 (212)
106 TIGR02667 moaB_proteo molybden 56.7 32 0.00069 29.0 5.7 62 167-233 21-88 (163)
107 TIGR00705 SppA_67K signal pept 56.1 16 0.00035 37.1 4.4 101 89-199 93-196 (584)
108 COG0474 MgtA Cation transport 55.6 46 0.001 35.6 7.9 106 116-238 550-659 (917)
109 cd04248 AAK_AK-Ectoine AAK_AK- 55.3 57 0.0012 30.9 7.7 71 167-239 142-226 (304)
110 PRK03673 hypothetical protein; 55.1 33 0.00072 33.4 6.3 63 168-235 21-87 (396)
111 TIGR01647 ATPase-IIIA_H plasma 53.7 79 0.0017 33.0 9.1 96 116-222 445-545 (755)
112 TIGR01524 ATPase-IIIB_Mg magne 53.5 66 0.0014 34.1 8.6 39 116-155 518-556 (867)
113 COG2185 Sbm Methylmalonyl-CoA 53.4 21 0.00045 30.4 4.0 48 119-166 81-129 (143)
114 PRK10517 magnesium-transportin 52.8 66 0.0014 34.4 8.5 95 116-222 553-648 (902)
115 PRK08140 enoyl-CoA hydratase; 52.1 48 0.001 29.4 6.4 35 108-142 26-60 (262)
116 COG0107 HisF Imidazoleglycerol 52.0 23 0.0005 32.9 4.4 71 166-236 153-230 (256)
117 PRK15122 magnesium-transportin 51.9 74 0.0016 34.0 8.7 95 116-222 553-648 (903)
118 PRK13585 1-(5-phosphoribosyl)- 51.7 1.1E+02 0.0024 26.5 8.5 48 175-222 156-203 (241)
119 TIGR01517 ATPase-IIB_Ca plasma 51.5 71 0.0015 34.1 8.5 39 116-155 582-620 (941)
120 PRK11572 copper homeostasis pr 51.2 1.2E+02 0.0027 27.9 9.0 109 106-223 63-181 (248)
121 PRK06210 enoyl-CoA hydratase; 49.9 55 0.0012 29.2 6.5 58 90-147 4-69 (272)
122 PLN02840 tRNA dimethylallyltra 49.6 14 0.0003 36.4 2.8 20 202-221 101-120 (421)
123 PRK03670 competence damage-ind 49.2 56 0.0012 29.8 6.4 63 168-235 20-87 (252)
124 TIGR00174 miaA tRNA isopenteny 49.0 14 0.00029 34.5 2.5 22 201-222 78-99 (287)
125 PRK07110 polyketide biosynthes 48.9 59 0.0013 28.8 6.5 53 90-142 4-62 (249)
126 PRK05981 enoyl-CoA hydratase; 48.2 62 0.0013 28.8 6.5 40 108-147 26-68 (266)
127 PRK06127 enoyl-CoA hydratase; 47.8 76 0.0016 28.4 7.0 40 108-147 33-75 (269)
128 PF04414 tRNA_deacylase: D-ami 47.7 1.3E+02 0.0028 27.0 8.4 114 90-216 90-212 (213)
129 PRK14729 miaA tRNA delta(2)-is 47.5 15 0.00033 34.4 2.6 19 204-222 85-103 (300)
130 KOG0456 Aspartate kinase [Amin 46.1 2.1E+02 0.0046 28.9 10.1 82 157-238 191-296 (559)
131 PRK06142 enoyl-CoA hydratase; 45.9 75 0.0016 28.4 6.7 40 108-147 28-69 (272)
132 TIGR03210 badI 2-ketocyclohexa 45.8 59 0.0013 28.9 6.0 40 108-147 24-66 (256)
133 COG1576 Uncharacterized conser 45.8 38 0.00083 29.3 4.5 39 92-141 70-108 (155)
134 PRK05995 enoyl-CoA hydratase; 45.6 71 0.0015 28.4 6.4 40 108-147 26-67 (262)
135 COG4002 Predicted phosphotrans 45.5 95 0.0021 28.7 7.2 74 114-217 123-198 (256)
136 PRK07854 enoyl-CoA hydratase; 45.3 43 0.00094 29.6 5.0 35 108-142 22-56 (243)
137 PF03932 CutC: CutC family; I 44.7 1.5E+02 0.0033 26.3 8.3 107 107-223 63-181 (201)
138 TIGR01282 nifD nitrogenase mol 44.5 19 0.0004 35.4 2.8 72 149-223 275-347 (466)
139 COG3340 PepE Peptidase E [Amin 44.2 16 0.00034 33.4 2.0 27 133-159 87-113 (224)
140 PRK07396 dihydroxynaphthoic ac 44.0 80 0.0017 28.4 6.6 58 90-147 12-77 (273)
141 PRK05862 enoyl-CoA hydratase; 43.8 82 0.0018 27.9 6.5 40 108-147 26-67 (257)
142 PRK05809 3-hydroxybutyryl-CoA 43.6 80 0.0017 28.0 6.5 58 90-147 3-68 (260)
143 PRK10949 protease 4; Provision 43.0 20 0.00044 36.8 2.8 101 89-199 112-215 (618)
144 PF06506 PrpR_N: Propionate ca 42.7 83 0.0018 26.4 6.1 59 116-179 112-172 (176)
145 COG1058 CinA Predicted nucleot 42.5 25 0.00054 32.5 3.1 40 113-153 45-88 (255)
146 cd01976 Nitrogenase_MoFe_alpha 41.9 17 0.00036 35.1 2.0 30 149-178 240-269 (421)
147 PF02441 Flavoprotein: Flavopr 41.2 53 0.0012 26.1 4.5 35 91-137 1-35 (129)
148 cd02071 MM_CoA_mut_B12_BD meth 40.9 52 0.0011 26.0 4.4 43 112-157 64-107 (122)
149 PRK04885 ppnK inorganic polyph 40.8 51 0.0011 30.2 4.8 50 114-166 12-77 (265)
150 PRK05869 enoyl-CoA hydratase; 40.7 61 0.0013 28.4 5.2 40 108-147 29-70 (222)
151 PRK01122 potassium-transportin 40.7 89 0.0019 32.6 7.1 20 203-222 499-518 (679)
152 COG1252 Ndh NADH dehydrogenase 40.3 3.3E+02 0.0071 26.8 10.5 134 88-228 98-268 (405)
153 TIGR00640 acid_CoA_mut_C methy 40.3 57 0.0012 26.7 4.6 43 112-157 67-110 (132)
154 PF02590 SPOUT_MTase: Predicte 39.6 44 0.00096 28.3 4.0 38 90-138 68-106 (155)
155 PF00070 Pyr_redox: Pyridine n 39.5 96 0.0021 22.2 5.3 14 133-148 2-15 (80)
156 PRK09120 p-hydroxycinnamoyl Co 39.5 87 0.0019 28.3 6.1 59 89-147 6-71 (275)
157 PRK07659 enoyl-CoA hydratase; 39.3 51 0.0011 29.3 4.5 40 108-147 28-68 (260)
158 COG2344 AT-rich DNA-binding pr 39.2 38 0.00081 30.7 3.6 39 104-144 60-98 (211)
159 cd02764 MopB_PHLH The MopB_PHL 38.8 3.3E+02 0.0071 26.8 10.4 28 109-140 302-329 (524)
160 COG1058 CinA Predicted nucleot 38.7 97 0.0021 28.7 6.3 63 168-234 21-86 (255)
161 COG0446 HcaD Uncharacterized N 38.4 96 0.0021 27.8 6.2 94 89-183 94-194 (415)
162 TIGR01689 EcbF-BcbF capsule bi 38.3 59 0.0013 26.7 4.4 46 91-137 2-48 (126)
163 PRK06495 enoyl-CoA hydratase; 38.2 1.1E+02 0.0023 27.2 6.4 40 108-147 25-66 (257)
164 PRK06023 enoyl-CoA hydratase; 38.0 62 0.0013 28.7 4.8 40 108-147 28-69 (251)
165 PRK06567 putative bifunctional 37.9 1.1E+02 0.0023 33.8 7.3 18 199-216 642-659 (1028)
166 cd00887 MoeA MoeA family. Memb 37.5 77 0.0017 30.3 5.7 57 168-229 195-255 (394)
167 TIGR00246 tRNA_RlmH_YbeA rRNA 37.4 55 0.0012 27.8 4.2 36 92-138 68-103 (153)
168 PTZ00174 phosphomannomutase; P 37.4 89 0.0019 27.4 5.7 44 89-138 4-47 (247)
169 PLN02888 enoyl-CoA hydratase 37.3 72 0.0016 28.7 5.2 40 108-147 32-73 (265)
170 PRK14010 potassium-transportin 37.2 1.1E+02 0.0023 32.0 7.0 20 203-222 494-514 (673)
171 TIGR01457 HAD-SF-IIA-hyp2 HAD- 37.0 61 0.0013 28.7 4.6 60 90-156 1-62 (249)
172 PLN02748 tRNA dimethylallyltra 36.9 25 0.00054 35.0 2.4 21 202-222 102-122 (468)
173 PLN02664 enoyl-CoA hydratase/d 36.9 72 0.0016 28.7 5.1 35 108-142 30-65 (275)
174 COG0547 TrpD Anthranilate phos 36.7 39 0.00084 32.4 3.5 69 110-181 197-285 (338)
175 PRK07112 polyketide biosynthes 36.7 1.1E+02 0.0023 27.2 6.2 39 108-147 26-65 (255)
176 COG3142 CutC Uncharacterized p 36.3 3E+02 0.0066 25.5 9.0 107 108-223 65-182 (241)
177 PRK13938 phosphoheptose isomer 36.3 55 0.0012 28.6 4.2 39 112-151 28-67 (196)
178 PRK08138 enoyl-CoA hydratase; 36.3 69 0.0015 28.5 4.9 40 108-147 30-71 (261)
179 TIGR01522 ATPase-IIA2_Ca golgi 36.2 1.6E+02 0.0036 31.2 8.3 39 116-155 531-569 (884)
180 KOG0405 Pyridine nucleotide-di 36.2 13 0.00029 36.7 0.3 60 77-144 141-203 (478)
181 COG0276 HemH Protoheme ferro-l 36.0 2.8E+02 0.006 26.6 9.0 106 110-233 161-275 (320)
182 PRK12478 enoyl-CoA hydratase; 35.9 1.2E+02 0.0026 27.9 6.5 40 108-147 27-68 (298)
183 PRK00103 rRNA large subunit me 35.7 62 0.0013 27.6 4.3 36 92-138 70-106 (157)
184 cd02067 B12-binding B12 bindin 35.5 45 0.00099 25.7 3.2 46 112-159 64-109 (119)
185 PRK07658 enoyl-CoA hydratase; 35.5 82 0.0018 27.8 5.2 35 108-142 23-58 (257)
186 PRK06072 enoyl-CoA hydratase; 35.4 1.1E+02 0.0024 27.1 6.0 35 108-142 22-57 (248)
187 COG0205 PfkA 6-phosphofructoki 35.4 81 0.0018 30.4 5.5 55 94-151 61-117 (347)
188 COG0616 SppA Periplasmic serin 35.2 43 0.00093 31.3 3.5 88 90-198 98-198 (317)
189 PRK06688 enoyl-CoA hydratase; 35.1 1.4E+02 0.003 26.4 6.6 40 108-147 27-68 (259)
190 PRK07509 enoyl-CoA hydratase; 35.0 1.3E+02 0.0028 26.7 6.4 40 108-147 25-66 (262)
191 TIGR02280 PaaB1 phenylacetate 35.0 78 0.0017 28.0 5.0 40 108-147 21-61 (256)
192 PRK05870 enoyl-CoA hydratase; 34.9 81 0.0018 27.9 5.1 40 108-147 25-66 (249)
193 PF01488 Shikimate_DH: Shikima 34.8 70 0.0015 25.7 4.3 79 131-228 13-93 (135)
194 PRK08290 enoyl-CoA hydratase; 34.7 1.3E+02 0.0028 27.5 6.5 39 109-147 27-67 (288)
195 PRK00549 competence damage-ind 34.5 1E+02 0.0023 29.9 6.1 60 168-233 20-84 (414)
196 PRK11423 methylmalonyl-CoA dec 34.5 1.2E+02 0.0027 27.0 6.2 57 91-147 4-68 (261)
197 PRK06190 enoyl-CoA hydratase; 34.4 1.4E+02 0.003 26.8 6.5 40 108-147 26-67 (258)
198 cd06558 crotonase-like Crotona 34.4 91 0.002 25.7 5.1 40 108-147 21-62 (195)
199 TIGR01459 HAD-SF-IIA-hyp4 HAD- 34.2 96 0.0021 27.0 5.4 59 90-155 8-67 (242)
200 PRK08260 enoyl-CoA hydratase; 34.2 1.3E+02 0.0028 27.4 6.4 35 108-142 26-61 (296)
201 PRK06213 enoyl-CoA hydratase; 34.1 79 0.0017 27.5 4.8 38 109-147 25-63 (229)
202 PRK09674 enoyl-CoA hydratase-i 34.1 85 0.0018 27.9 5.1 40 108-147 24-65 (255)
203 cd08186 Fe-ADH8 Iron-containin 34.0 2.2E+02 0.0048 26.9 8.2 86 114-224 10-97 (383)
204 PRK06563 enoyl-CoA hydratase; 33.8 81 0.0018 27.9 4.9 40 108-147 21-62 (255)
205 PRK09754 phenylpropionate diox 33.6 47 0.001 31.0 3.5 94 88-183 99-202 (396)
206 PRK00561 ppnK inorganic polyph 33.6 70 0.0015 29.4 4.5 49 115-166 13-73 (259)
207 PF11181 YflT: Heat induced st 33.6 2.2E+02 0.0049 21.9 7.5 85 116-216 10-102 (103)
208 PRK07799 enoyl-CoA hydratase; 33.5 1.5E+02 0.0031 26.4 6.5 39 109-147 28-68 (263)
209 TIGR00200 cinA_nterm competenc 33.5 1.1E+02 0.0025 29.8 6.2 61 168-233 20-84 (413)
210 PRK10949 protease 4; Provision 33.1 55 0.0012 33.7 4.2 82 90-187 365-455 (618)
211 COG1024 CaiD Enoyl-CoA hydrata 33.1 80 0.0017 27.9 4.8 39 109-147 28-68 (257)
212 TIGR01497 kdpB K+-transporting 32.5 1.8E+02 0.0038 30.5 7.7 38 117-155 450-487 (675)
213 PF02423 OCD_Mu_crystall: Orni 32.1 1.6E+02 0.0034 27.3 6.7 88 124-229 122-213 (313)
214 PRK08272 enoyl-CoA hydratase; 32.0 1.6E+02 0.0035 26.8 6.7 58 90-147 9-73 (302)
215 PF01872 RibD_C: RibD C-termin 32.0 36 0.00079 28.6 2.3 28 117-144 122-149 (200)
216 PRK10513 sugar phosphate phosp 31.9 1.1E+02 0.0025 26.5 5.5 43 90-138 3-45 (270)
217 PRK05980 enoyl-CoA hydratase; 31.8 90 0.002 27.6 4.9 40 108-147 25-67 (260)
218 KOG2862 Alanine-glyoxylate ami 31.6 70 0.0015 31.2 4.3 56 167-223 288-349 (385)
219 cd05006 SIS_GmhA Phosphoheptos 31.6 72 0.0016 26.5 4.0 31 110-141 14-44 (177)
220 PRK08150 enoyl-CoA hydratase; 31.6 92 0.002 27.7 4.9 39 108-147 24-63 (255)
221 PRK10530 pyridoxal phosphate ( 31.5 86 0.0019 27.1 4.6 43 90-138 3-45 (272)
222 PRK08252 enoyl-CoA hydratase; 31.4 99 0.0021 27.4 5.1 35 108-142 25-60 (254)
223 COG1251 NirB NAD(P)H-nitrite r 31.3 1.1E+02 0.0024 32.8 6.0 91 89-186 101-206 (793)
224 TIGR01684 viral_ppase viral ph 31.2 1.7E+02 0.0037 27.9 6.8 62 90-155 126-187 (301)
225 PRK06494 enoyl-CoA hydratase; 31.0 1.7E+02 0.0037 26.0 6.5 39 109-147 27-68 (259)
226 PRK07938 enoyl-CoA hydratase; 30.9 98 0.0021 27.5 5.0 35 108-142 23-58 (249)
227 PRK06144 enoyl-CoA hydratase; 30.8 1.4E+02 0.0031 26.6 6.0 40 108-147 30-72 (262)
228 PRK00414 gmhA phosphoheptose i 30.7 66 0.0014 27.7 3.7 30 111-141 26-55 (192)
229 KOG1336 Monodehydroascorbate/f 30.6 79 0.0017 31.9 4.6 54 89-145 169-228 (478)
230 COG1915 Uncharacterized conser 30.6 67 0.0015 31.3 4.0 26 112-137 183-208 (415)
231 PRK11070 ssDNA exonuclease Rec 30.5 70 0.0015 32.7 4.4 48 105-159 110-158 (575)
232 COG0396 sufC Cysteine desulfur 29.7 97 0.0021 28.8 4.7 35 103-137 168-202 (251)
233 TIGR00174 miaA tRNA isopenteny 29.6 1.5E+02 0.0032 27.6 6.1 34 110-144 68-103 (287)
234 PRK07827 enoyl-CoA hydratase; 29.5 1.1E+02 0.0023 27.3 4.9 39 109-147 29-69 (260)
235 PRK06143 enoyl-CoA hydratase; 29.4 1.1E+02 0.0024 27.3 5.0 40 108-147 29-71 (256)
236 cd07022 S49_Sppa_36K_type Sign 29.3 73 0.0016 27.6 3.8 88 90-188 43-133 (214)
237 PRK09417 mogA molybdenum cofac 29.1 1.8E+02 0.004 25.5 6.2 68 168-238 23-96 (193)
238 CHL00162 thiG thiamin biosynth 29.0 87 0.0019 29.4 4.4 37 196-239 121-158 (267)
239 cd00640 Trp-synth-beta_II Tryp 28.9 2.2E+02 0.0048 24.6 6.7 58 91-155 15-76 (244)
240 TIGR03169 Nterm_to_SelD pyridi 28.7 2E+02 0.0043 26.2 6.7 16 88-103 94-109 (364)
241 PRK09076 enoyl-CoA hydratase; 28.7 1.2E+02 0.0026 27.0 5.1 40 108-147 24-66 (258)
242 COG2908 Uncharacterized protei 28.5 87 0.0019 28.8 4.2 41 112-152 50-90 (237)
243 COG0521 MoaB Molybdopterin bio 28.2 2.4E+02 0.0053 24.6 6.8 63 171-238 30-97 (169)
244 PRK01158 phosphoglycolate phos 28.2 1.1E+02 0.0024 25.7 4.7 44 90-139 3-46 (230)
245 PF00162 PGK: Phosphoglycerate 27.8 82 0.0018 30.7 4.2 46 89-135 8-53 (384)
246 PRK07260 enoyl-CoA hydratase; 27.7 1.7E+02 0.0037 25.8 5.9 40 108-147 24-65 (255)
247 TIGR01490 HAD-SF-IB-hyp1 HAD-s 27.6 1.1E+02 0.0024 25.2 4.4 41 117-158 91-131 (202)
248 COG0278 Glutaredoxin-related p 27.5 1.3E+02 0.0027 24.7 4.5 37 200-236 4-43 (105)
249 PRK08329 threonine synthase; V 27.5 2.3E+02 0.005 26.5 7.0 58 92-156 73-131 (347)
250 PRK08259 enoyl-CoA hydratase; 27.4 1.3E+02 0.0027 26.8 5.0 35 108-142 25-60 (254)
251 COG0041 PurE Phosphoribosylcar 27.4 74 0.0016 27.8 3.4 45 174-222 22-68 (162)
252 PRK15454 ethanol dehydrogenase 27.4 3.2E+02 0.0068 26.2 8.0 82 114-223 36-118 (395)
253 TIGR02852 spore_dpaB dipicolin 27.3 1.2E+02 0.0027 26.5 4.8 35 91-136 1-35 (187)
254 COG1938 Archaeal enzymes of AT 27.1 4.6E+02 0.0099 24.3 8.6 95 109-209 86-197 (244)
255 PRK05920 aromatic acid decarbo 27.1 1.4E+02 0.0029 26.6 5.1 35 90-136 3-37 (204)
256 TIGR03590 PseG pseudaminic aci 26.9 1.1E+02 0.0023 27.6 4.6 41 91-141 171-211 (279)
257 PHA03398 viral phosphatase sup 26.9 1.7E+02 0.0037 27.9 6.0 62 90-155 128-189 (303)
258 TIGR02482 PFKA_ATP 6-phosphofr 26.9 1.6E+02 0.0034 27.6 5.8 54 95-151 59-114 (301)
259 PRK08305 spoVFB dipicolinate s 26.9 1.4E+02 0.003 26.5 5.1 37 89-136 4-40 (196)
260 PF07287 DUF1446: Protein of u 26.8 4E+02 0.0087 25.8 8.6 52 104-155 46-101 (362)
261 PF08645 PNK3P: Polynucleotide 26.7 73 0.0016 26.6 3.2 25 117-141 33-57 (159)
262 PRK07511 enoyl-CoA hydratase; 26.7 1.1E+02 0.0024 27.1 4.5 35 108-142 25-60 (260)
263 PRK05864 enoyl-CoA hydratase; 26.7 1.3E+02 0.0027 27.1 5.0 40 108-147 32-73 (276)
264 PF03435 Saccharop_dh: Sacchar 26.6 1.8E+02 0.0039 27.1 6.1 18 199-216 56-73 (386)
265 PRK06823 ornithine cyclodeamin 26.4 2.7E+02 0.0058 26.0 7.2 87 124-228 122-210 (315)
266 TIGR02374 nitri_red_nirB nitri 26.3 1.4E+02 0.003 31.2 5.8 93 89-183 96-198 (785)
267 PRK07468 enoyl-CoA hydratase; 26.3 1.3E+02 0.0028 26.8 4.9 35 108-142 27-62 (262)
268 TIGR00706 SppA_dom signal pept 26.1 63 0.0014 27.9 2.8 89 90-189 31-122 (207)
269 smart00463 SMR Small MutS-rela 26.0 1.4E+02 0.0031 21.6 4.3 29 112-140 12-42 (80)
270 PRK14024 phosphoribosyl isomer 26.0 1.3E+02 0.0028 26.7 4.8 54 167-220 145-198 (241)
271 PLN02645 phosphoglycolate phos 25.9 1.3E+02 0.0027 27.6 4.9 59 90-155 28-88 (311)
272 KOG2495 NADH-dehydrogenase (ub 25.9 30 0.00066 34.8 0.9 17 133-151 221-237 (491)
273 PLN03034 phosphoglycerate kina 25.8 1.8E+02 0.0039 29.4 6.2 49 87-135 89-137 (481)
274 PF12710 HAD: haloacid dehalog 25.7 88 0.0019 25.2 3.5 35 120-155 96-130 (192)
275 TIGR02371 ala_DH_arch alanine 25.7 2.7E+02 0.0059 25.8 7.1 85 125-228 123-210 (325)
276 KOG0623 Glutamine amidotransfe 25.7 1.2E+02 0.0025 30.2 4.7 68 169-236 442-516 (541)
277 cd01427 HAD_like Haloacid deha 25.5 79 0.0017 23.0 2.9 26 116-141 27-52 (139)
278 TIGR00161 conserved hypothetic 25.3 2.7E+02 0.0058 24.9 6.7 95 110-209 87-194 (238)
279 TIGR00216 ispH_lytB (E)-4-hydr 25.2 85 0.0018 29.3 3.6 23 130-152 209-234 (280)
280 PF01713 Smr: Smr domain; Int 25.2 1.5E+02 0.0032 21.7 4.3 28 112-139 9-37 (83)
281 cd00758 MoCF_BD MoCF_BD: molyb 25.1 76 0.0017 25.4 2.9 22 116-138 46-67 (133)
282 PRK15482 transcriptional regul 25.0 5E+02 0.011 23.2 9.3 26 110-140 120-145 (285)
283 COG1126 GlnQ ABC-type polar am 25.0 1.4E+02 0.0031 27.6 4.9 34 104-137 161-194 (240)
284 PRK03580 carnitinyl-CoA dehydr 25.0 1.4E+02 0.003 26.6 4.9 40 108-147 24-66 (261)
285 PF13241 NAD_binding_7: Putati 25.0 47 0.001 25.5 1.6 15 131-145 8-22 (103)
286 PRK06278 cobyrinic acid a,c-di 24.9 3.1E+02 0.0067 27.5 7.6 87 127-216 315-414 (476)
287 COG0420 SbcD DNA repair exonuc 24.9 1.4E+02 0.0029 28.1 5.0 39 97-138 46-84 (390)
288 PF02601 Exonuc_VII_L: Exonucl 24.9 86 0.0019 28.7 3.6 29 113-141 55-88 (319)
289 PRK00091 miaA tRNA delta(2)-is 24.9 49 0.0011 31.0 2.0 21 202-222 84-104 (307)
290 PF00850 Hist_deacetyl: Histon 24.9 91 0.002 28.8 3.8 51 91-141 242-295 (311)
291 TIGR01929 menB naphthoate synt 24.9 1.4E+02 0.0029 26.7 4.8 39 109-147 26-67 (259)
292 PF02401 LYTB: LytB protein; 24.8 78 0.0017 29.5 3.3 31 120-151 201-234 (281)
293 PF06258 Mito_fiss_Elm1: Mitoc 24.7 2.1E+02 0.0046 26.7 6.2 139 90-237 146-308 (311)
294 TIGR01523 ATPase-IID_K-Na pota 24.6 2.7E+02 0.0058 30.6 7.6 37 117-154 650-686 (1053)
295 PF03853 YjeF_N: YjeF-related 24.6 84 0.0018 26.4 3.2 26 116-141 10-37 (169)
296 TIGR03127 RuMP_HxlB 6-phospho 24.6 3.8E+02 0.0083 22.0 7.2 26 110-140 15-40 (179)
297 PF01262 AlaDh_PNT_C: Alanine 24.5 52 0.0011 27.3 1.9 29 131-159 21-50 (168)
298 PRK13984 putative oxidoreducta 24.4 79 0.0017 31.5 3.5 12 89-100 368-379 (604)
299 COG4567 Response regulator con 24.4 1.3E+02 0.0028 26.6 4.4 54 89-157 55-108 (182)
300 PTZ00318 NADH dehydrogenase-li 24.4 1.7E+02 0.0037 27.7 5.6 13 89-101 113-125 (424)
301 PRK05282 (alpha)-aspartyl dipe 24.4 53 0.0012 29.6 2.1 27 133-159 82-108 (233)
302 cd00419 Ferrochelatase_C Ferro 24.4 2E+02 0.0044 23.5 5.4 64 165-233 42-109 (135)
303 PRK14690 molybdopterin biosynt 24.3 1.4E+02 0.0031 29.1 5.2 50 168-222 220-271 (419)
304 TIGR01035 hemA glutamyl-tRNA r 24.3 2.2E+02 0.0048 27.4 6.4 26 131-156 181-207 (417)
305 PRK10976 putative hydrolase; P 24.3 1.8E+02 0.0039 25.2 5.4 43 90-138 2-44 (266)
306 PLN03214 probable enoyl-CoA hy 24.2 1.6E+02 0.0035 26.7 5.2 39 109-147 34-76 (278)
307 cd02072 Glm_B12_BD B12 binding 24.0 1.3E+02 0.0028 24.9 4.1 44 112-158 64-114 (128)
308 PRK10680 molybdopterin biosynt 24.0 1.4E+02 0.0031 29.0 5.0 58 168-230 204-265 (411)
309 PRK07657 enoyl-CoA hydratase; 24.0 1.5E+02 0.0033 26.2 5.0 40 108-147 26-68 (260)
310 PRK13512 coenzyme A disulfide 24.0 1.1E+02 0.0024 29.2 4.2 91 89-183 105-205 (438)
311 PLN02282 phosphoglycerate kina 23.8 1.9E+02 0.0041 28.5 5.9 48 88-135 15-62 (401)
312 PF00378 ECH: Enoyl-CoA hydrat 23.8 84 0.0018 27.4 3.2 34 109-142 21-55 (245)
313 PRK14497 putative molybdopteri 23.8 1.6E+02 0.0034 30.1 5.5 49 168-221 206-256 (546)
314 COG5405 HslV ATP-dependent pro 23.7 72 0.0016 28.2 2.7 21 139-159 73-94 (178)
315 COG0123 AcuC Deacetylases, inc 23.7 1.7E+02 0.0036 28.0 5.3 52 91-142 241-295 (340)
316 PRK15126 thiamin pyrimidine py 23.5 1.8E+02 0.0039 25.4 5.3 43 90-138 2-44 (272)
317 TIGR01861 ANFD nitrogenase iro 23.2 1.1E+02 0.0024 30.7 4.2 29 149-177 270-298 (513)
318 COG0299 PurN Folate-dependent 23.1 1.9E+02 0.0042 26.0 5.3 57 91-159 1-57 (200)
319 KOG3220 Similar to bacterial d 23.1 60 0.0013 29.7 2.1 49 85-135 40-112 (225)
320 cd07023 S49_Sppa_N_C Signal pe 23.0 1.1E+02 0.0024 26.2 3.7 89 90-188 35-126 (208)
321 PRK14114 1-(5-phosphoribosyl)- 22.9 1.2E+02 0.0026 27.3 4.1 54 167-220 143-196 (241)
322 COG2217 ZntA Cation transport 22.8 2.6E+02 0.0056 29.5 6.9 58 93-158 520-581 (713)
323 PLN02887 hydrolase family prot 22.7 1.8E+02 0.0039 29.8 5.6 45 89-139 307-351 (580)
324 PLN02600 enoyl-CoA hydratase 22.7 1.7E+02 0.0037 25.9 5.0 40 108-147 17-59 (251)
325 PRK03501 ppnK inorganic polyph 22.6 1.3E+02 0.0028 27.7 4.2 34 114-147 14-58 (264)
326 PRK13946 shikimate kinase; Pro 22.6 1.9E+02 0.004 24.2 5.0 31 130-160 10-43 (184)
327 TIGR01357 aroB 3-dehydroquinat 22.6 1.3E+02 0.0027 27.9 4.3 36 110-145 62-97 (344)
328 PRK01045 ispH 4-hydroxy-3-meth 22.5 1E+02 0.0022 29.0 3.6 32 122-154 204-238 (298)
329 TIGR03189 dienoyl_CoA_hyt cycl 22.5 1.8E+02 0.004 25.8 5.1 40 108-147 22-63 (251)
330 COG0303 MoeA Molybdopterin bio 22.4 1.8E+02 0.0039 28.5 5.4 50 168-222 203-254 (404)
331 COG0459 GroL Chaperonin GroEL 22.3 2.2E+02 0.0048 28.7 6.2 47 91-145 359-407 (524)
332 PRK10886 DnaA initiator-associ 22.2 5E+02 0.011 22.7 7.7 29 112-141 24-52 (196)
333 PRK14498 putative molybdopteri 22.2 1.6E+02 0.0036 29.7 5.3 58 168-230 213-274 (633)
334 PF07812 TfuA: TfuA-like prote 22.2 96 0.0021 25.8 3.0 28 201-238 12-39 (120)
335 cd07766 DHQ_Fe-ADH Dehydroquin 22.2 1.2E+02 0.0026 27.7 4.0 33 110-145 62-94 (332)
336 PRK07327 enoyl-CoA hydratase; 22.2 1.8E+02 0.0038 26.1 5.0 39 109-147 35-75 (268)
337 TIGR01116 ATPase-IIA1_Ca sarco 22.1 4.6E+02 0.01 28.1 8.8 39 116-155 540-578 (917)
338 TIGR02069 cyanophycinase cyano 22.1 5.9E+02 0.013 23.0 8.7 23 203-227 75-97 (250)
339 PRK08139 enoyl-CoA hydratase; 22.1 1.6E+02 0.0035 26.3 4.8 34 109-142 34-68 (266)
340 COG0561 Cof Predicted hydrolas 22.0 1.5E+02 0.0032 25.8 4.3 58 90-155 3-61 (264)
341 COG0761 lytB 4-Hydroxy-3-methy 21.9 1E+02 0.0022 29.3 3.5 35 121-156 205-242 (294)
342 TIGR00197 yjeF_nterm yjeF N-te 21.9 1E+02 0.0022 26.8 3.3 17 201-217 135-151 (205)
343 PRK07313 phosphopantothenoylcy 21.8 2.1E+02 0.0045 24.6 5.2 33 91-135 2-34 (182)
344 COG0062 Uncharacterized conser 21.6 1E+02 0.0022 27.5 3.3 100 116-217 34-156 (203)
345 cd03812 GT1_CapH_like This fam 21.5 2.2E+02 0.0047 24.8 5.3 91 117-223 209-302 (358)
346 PRK12814 putative NADPH-depend 21.5 1.4E+02 0.003 30.5 4.6 12 90-101 279-290 (652)
347 PLN02546 glutathione reductase 21.4 1E+02 0.0022 31.1 3.6 90 89-183 216-309 (558)
348 COG1088 RfbB dTDP-D-glucose 4, 21.4 2.6E+02 0.0056 27.2 6.0 64 171-236 161-231 (340)
349 PRK01033 imidazole glycerol ph 21.4 1.6E+02 0.0036 26.3 4.6 52 169-220 153-204 (258)
350 PRK10717 cysteine synthase A; 21.3 3.4E+02 0.0074 24.9 6.8 58 92-156 29-91 (330)
351 TIGR01491 HAD-SF-IB-PSPlk HAD- 21.2 1.7E+02 0.0038 23.7 4.4 39 117-156 84-122 (201)
352 PRK05625 5-amino-6-(5-phosphor 21.1 98 0.0021 26.7 3.0 25 120-144 131-155 (217)
353 COG1979 Uncharacterized oxidor 20.9 1.9E+02 0.0042 28.4 5.1 57 89-145 28-101 (384)
354 PRK03604 moaC bifunctional mol 20.9 2.8E+02 0.0061 26.2 6.2 61 168-233 175-240 (312)
355 TIGR02113 coaC_strep phosphopa 20.7 2.2E+02 0.0048 24.4 5.1 33 91-135 1-33 (177)
356 cd05017 SIS_PGI_PMI_1 The memb 20.7 2.6E+02 0.0057 21.6 5.2 28 116-143 57-84 (119)
357 COG4052 Uncharacterized protei 20.7 4.5E+02 0.0097 24.8 7.3 25 111-135 50-78 (310)
358 PLN02921 naphthoate synthase 20.7 2E+02 0.0043 27.1 5.1 58 90-147 64-131 (327)
359 COG0758 Smf Predicted Rossmann 20.7 1.5E+02 0.0032 28.7 4.3 92 112-216 127-229 (350)
360 cd02070 corrinoid_protein_B12- 20.6 1.3E+02 0.0028 25.9 3.6 43 112-159 147-191 (201)
361 PLN02165 adenylate isopentenyl 20.5 73 0.0016 30.5 2.2 18 204-221 126-143 (334)
362 PRK05249 soluble pyridine nucl 20.5 75 0.0016 30.2 2.3 53 89-144 137-189 (461)
363 PRK12360 4-hydroxy-3-methylbut 20.4 1.1E+02 0.0025 28.5 3.5 30 122-152 203-235 (281)
364 PRK13962 bifunctional phosphog 20.4 2.8E+02 0.006 29.1 6.5 48 88-135 11-58 (645)
365 TIGR01670 YrbI-phosphatas 3-de 20.2 1.7E+02 0.0036 23.9 4.1 56 121-183 36-91 (154)
366 PRK08788 enoyl-CoA hydratase; 20.2 2.2E+02 0.0048 26.3 5.3 39 109-147 39-85 (287)
367 TIGR03572 WbuZ glycosyl amidat 20.2 1.9E+02 0.0042 25.0 4.7 53 170-222 155-207 (232)
368 COG2068 Uncharacterized MobA-r 20.2 6.4E+02 0.014 22.6 8.9 103 126-233 42-151 (199)
369 KOG1780 Small Nuclear ribonucl 20.1 61 0.0013 25.1 1.3 12 90-101 14-25 (77)
370 cd05005 SIS_PHI Hexulose-6-pho 20.0 3.4E+02 0.0074 22.4 6.0 26 110-140 18-43 (179)
No 1
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=359.96 Aligned_cols=150 Identities=63% Similarity=0.957 Sum_probs=145.9
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHH
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~L 168 (239)
+|||||||||||+|.++++++||++.++++|++|+++.+.|+||+||+||||+||||..+. .|++|..+|||||+||+|
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTvm 82 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATVM 82 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHHH
Confidence 6999999999999999888999999999999999999999999999999999999997665 499999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 169 NAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
||++|+++|+..+++++|+|++.+++++++|+++++.++|++|+||||+||||+|||||||+|||||+||+
T Consensus 83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ 153 (238)
T COG0528 83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIE 153 (238)
T ss_pred HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PRK14556 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=7.9e-45 Score=325.77 Aligned_cols=151 Identities=42% Similarity=0.648 Sum_probs=144.3
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHH
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~L 168 (239)
+|||||||||||+|.+++++++|.+.++++|++|+++.+.|+||+||+||||+|||......+|++|..+|+|||+||+|
T Consensus 14 ~~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~i 93 (249)
T PRK14556 14 KLKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMI 93 (249)
T ss_pred hhCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHH
Confidence 59999999999999999888999999999999999999999999999999999999655323689999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 169 NAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
||++|+++|++.|++++++||++++.+||+|+++++.+++++|+||||+||+|+|+||||++||++|.+++
T Consensus 94 Nal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~ 164 (249)
T PRK14556 94 NALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIG 164 (249)
T ss_pred HHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PRK14557 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.7e-32 Score=244.68 Aligned_cols=150 Identities=47% Similarity=0.755 Sum_probs=139.2
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHH
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 168 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~L 168 (239)
+|||+||||||++|.+++..++|.+.+++++++|+++.+.|++|+|||||||+|||+ .++++++++..+|++||++|+|
T Consensus 3 ~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~-~a~~~~~~~~~~D~ig~~g~~l 81 (247)
T PRK14557 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGH-LAEEWGIDRVEADNIGTLGTII 81 (247)
T ss_pred cccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHH-HHHhcCCChHHHHHHHHHHHHH
Confidence 599999999999998766667999999999999999999999999999999999996 4678999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 169 NAIFLQATMESI-GIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 169 NAllL~~aL~~~-gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
|+++|+.+|+.+ +.++.++++..++.+++++...++.++|++|+||||+|+.|+|+||||++||++|.+++
T Consensus 82 na~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~ 153 (247)
T PRK14557 82 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMN 153 (247)
T ss_pred HHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhC
Confidence 999999999984 78888999988889999998888999999999999999889999999999999999875
No 4
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.95 E-value=1.1e-26 Score=203.68 Aligned_cols=149 Identities=59% Similarity=0.974 Sum_probs=135.8
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 169 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LN 169 (239)
|+|+||||||++|+++++..++.+.++++|++|+++.+.|++++||||||+++|++. +++++.++...|++|++++++|
T Consensus 1 ~~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l~ 79 (233)
T TIGR02075 1 YKRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVIN 79 (233)
T ss_pred CCEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHHH
Confidence 789999999999987555568999999999999999888899999999999999987 6779988878999999999999
Q ss_pred HHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 170 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 170 AllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
++++..+|.++|+++.+++++..+.+.+.|..+++.+++++|.|||+.|+.|.|++|||..|+++|.+++
T Consensus 80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~ 149 (233)
T TIGR02075 80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEIN 149 (233)
T ss_pred HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcC
Confidence 9999999999999999998776666667788899999999999999988889999999999999999875
No 5
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.94 E-value=2e-26 Score=201.29 Aligned_cols=146 Identities=42% Similarity=0.672 Sum_probs=128.1
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 170 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNA 170 (239)
|||||||||++|++++...+|.+.++++|++|+++.+.|++++||||||+++||... .++++...|++|+.+++||+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~---~~~~~~~~d~ig~~~~~ln~ 77 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVEL---KELSPTRADQIGMLGTVINA 77 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhc---cCCChHHHHHHHHHHHHHHH
Confidence 689999999999976556699999999999999999999999999999999998764 35777889999999999999
Q ss_pred HHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 171 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 171 llL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
+++..+|.++|+++..++.+........+.++++.++++.|.|||+.|+.++|++|||+.|+++|.+++
T Consensus 78 ~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~ 146 (231)
T PRK14558 78 LYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMK 146 (231)
T ss_pred HHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcC
Confidence 999999999999988776554322224556899999999999999988889999999999999999875
No 6
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.94 E-value=2.3e-26 Score=211.93 Aligned_cols=147 Identities=29% Similarity=0.367 Sum_probs=131.1
Q ss_pred EEEEEeccccccCCCC---CCCCHHHHHHHHHHHHHHHhCCceEEEEECCC----hhhhhhhhhh----hcCCCccchhH
Q 026370 92 RVLLKVSGEALAGDHT---QNIDPKITMAIAREVASVTRLGIEVAIVVGGG----NIFRGASAAG----NSGLDRSSADY 160 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~---~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGG----niaRg~~~Ar----~~Gi~r~~aD~ 160 (239)
|||||||||+|.++++ ..++.+.+++.|++|++++++||||+|||||| |+||+.++++ .+++++..+|+
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~ 80 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchh
Confidence 6999999999998664 46889999999999999999999999999999 9999987763 57899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEeccccCccc--------------ccch----------------------HH--
Q 026370 161 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------------EPYI----------------------RR-- 202 (239)
Q Consensus 161 IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~--------------e~y~----------------------~~-- 202 (239)
+||++++| +++|+..|.+.+++..+++.+....+. +.|+ |+
T Consensus 81 ~G~ig~~~-~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv 159 (308)
T cd04235 81 QGMIGYML-QQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred hHHHHHHH-HHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence 99999999 999999999999999898888776666 5555 44
Q ss_pred ------------HHHH-HHhCCCEEEEeCCCCCccccc-------------hHHHHHHhhhcC
Q 026370 203 ------------RAVR-HLEKGRVVIFAAGTGNPFFTT-------------DTAAALRCAEIS 239 (239)
Q Consensus 203 ------------ea~~-~L~~G~IvVfagGtg~P~fTT-------------Dt~AAlrA~Ei~ 239 (239)
++.+ +|++|.|||++||||+|++++ |++|+++|.+++
T Consensus 160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~ 222 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEIN 222 (308)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcC
Confidence 5555 799999999999999999998 999999999985
No 7
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.94 E-value=2e-25 Score=194.22 Aligned_cols=148 Identities=69% Similarity=1.040 Sum_probs=132.1
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 170 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNA 170 (239)
||+|||+||++|.++++..+|.+.+++++++|+++.+.|++++||||||+++|++... ..|+++...|++|++++++|+
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 79 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVMNA 79 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHHHH
Confidence 5899999999998765556899999999999999998899999999999999998543 467888789999999999999
Q ss_pred HHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 171 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 171 llL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
.++..+|..+|+++.++++...+.+.+++..+.+.++|++|.|||+.|+.|+|++|+|+.|+++|.+++
T Consensus 80 ~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~ 148 (231)
T PRK00358 80 LALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIG 148 (231)
T ss_pred HHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcC
Confidence 999999999999988777766666667777888999999999999999889999999999999998875
No 8
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.93 E-value=1.8e-25 Score=195.58 Aligned_cols=148 Identities=70% Similarity=1.064 Sum_probs=132.8
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 170 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNA 170 (239)
|++||||||++|+++++..+|.+.+++++++|+++.+.|++++||||||+++|++.. ++++..+...|++||+++++|+
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~-~~~~~~~~~~d~~g~~~~~~n~ 79 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASA-AEAGMDRATADYMGMLATVINA 79 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchh-hhcCCCchhhhHHHHHHHHHHH
Confidence 589999999999876566699999999999999998888999999999999988644 5689998889999999999999
Q ss_pred HHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 171 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 171 llL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
+++..+|.+.|+++..+++..++.+.+.+..+.+.++++.|.|||+.|+.|+|.+|||++|+++|..++
T Consensus 80 ~ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~ 148 (231)
T cd04254 80 LALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEIN 148 (231)
T ss_pred HHHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcC
Confidence 999999999999999988877655556677899999999999999998889999999999999998774
No 9
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.91 E-value=1.6e-23 Score=182.67 Aligned_cols=146 Identities=65% Similarity=0.984 Sum_probs=130.0
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHHH
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAI 171 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNAl 171 (239)
|+|||+||+.|.+++. .++.+.+++++++|+++.+.|++++||||||.+++++.. .++++.+...|++|+.++++|+.
T Consensus 1 ~iViKiGGs~l~~~~~-~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 78 (229)
T cd04239 1 RIVLKLSGEALAGEGG-GIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIA-AARGMPRATADYIGMLATVMNAL 78 (229)
T ss_pred CEEEEECcceecCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHH-hhcCCChhhHHHHHHHHHHHHHH
Confidence 6899999999987543 699999999999999998889999999999999999854 35778888899999999999999
Q ss_pred HHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 172 FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 172 lL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
++..+|.++|+++..+++..+..+.+.|+.+.+.++++.|.|||+.|..|.|+.++|+.|+++|..++
T Consensus 79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~ 146 (229)
T cd04239 79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIG 146 (229)
T ss_pred HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcC
Confidence 99999999999988877665555556678899999999999999998889999999999999998875
No 10
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.88 E-value=3.2e-22 Score=173.83 Aligned_cols=128 Identities=30% Similarity=0.442 Sum_probs=110.3
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccchhHHHHHHHHHHH
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNA 170 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD~IGMlAT~LNA 170 (239)
|+||||||++|.+.+ +.+.+++++++|+++.+ |++++||||||+++|.+ +.++++++++..+|++|+.+|++|+
T Consensus 1 ~iViKlGGs~l~~~~----~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln~ 75 (221)
T cd04253 1 RIVISLGGSVLAPEK----DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNA 75 (221)
T ss_pred CEEEEeccceeCCCC----ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 689999999986432 78999999999999866 78999999999999998 6777788888889999999999999
Q ss_pred HHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 171 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 171 llL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
+++..+++ .++++.. ++.+++.++|++|+|||+ +|..|++|||+.|+++|.+++
T Consensus 76 ~~~~~~l~-~~~~~~~------------~~~~~~~~~l~~g~vpv~--~G~~~~~s~D~~a~~lA~~l~ 129 (221)
T cd04253 76 RLLIAALG-DAYPPVP------------TSYEEALEAMFTGKIVVM--GGTEPGQSTDAVAALLAERLG 129 (221)
T ss_pred HHHHHHHh-cCCCcCC------------CCHHHHHHHHHcCCeEEE--ECCCCCCccHHHHHHHHHHcC
Confidence 99999998 4665322 235789999999999999 335799999999999999875
No 11
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.87 E-value=2.2e-21 Score=179.43 Aligned_cols=148 Identities=26% Similarity=0.347 Sum_probs=124.2
Q ss_pred cEEEEEeccccccCCCCCCCC---HHHHHHHHHHHHHHHhCCceEEEEECCCh----hhhhhhhhhhcC-----CCccch
Q 026370 91 QRVLLKVSGEALAGDHTQNID---PKITMAIAREVASVTRLGIEVAIVVGGGN----IFRGASAAGNSG-----LDRSSA 158 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid---~~~l~~iA~~I~~l~~~G~~I~IV~GGGn----iaRg~~~Ar~~G-----i~r~~a 158 (239)
|||||+||||+|.++++.+.+ .+.+++.|++|+++.++||||+||||||+ ++|+.+++++.+ ++.-.+
T Consensus 3 ~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~a 82 (313)
T PRK12454 3 KRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGA 82 (313)
T ss_pred ceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhhh
Confidence 699999999999987666544 35999999999999999999999999988 999987765544 788889
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcccc--------------cchH-----------------------
Q 026370 159 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE--------------PYIR----------------------- 201 (239)
Q Consensus 159 D~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e--------------~y~~----------------------- 201 (239)
+..||+++.| ...|+..|.+.|++..+.+.+..-.|.+ .|+.
T Consensus 83 ~sqG~igy~l-~~al~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~R 161 (313)
T PRK12454 83 MTQGWIGYMI-QQALRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGWR 161 (313)
T ss_pred hhhHHHHHHH-HHHHHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCceE
Confidence 9999999999 9999999999998877776665544444 4444
Q ss_pred --------------HHHHHHHhCCCEEEEeCCCCCccccc-------------hHHHHHHhhhcC
Q 026370 202 --------------RRAVRHLEKGRVVIFAAGTGNPFFTT-------------DTAAALRCAEIS 239 (239)
Q Consensus 202 --------------~ea~~~L~~G~IvVfagGtg~P~fTT-------------Dt~AAlrA~Ei~ 239 (239)
+.++.+|+.|.|||++||+|.|.+++ |.+|+++|.+|+
T Consensus 162 rvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~ 226 (313)
T PRK12454 162 RVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELN 226 (313)
T ss_pred EEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcC
Confidence 33445699999999999999998865 999999999875
No 12
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.86 E-value=3.5e-21 Score=166.85 Aligned_cols=128 Identities=27% Similarity=0.359 Sum_probs=111.4
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccchhHHHHHHHHHHHH
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAI 171 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD~IGMlAT~LNAl 171 (239)
+||||||++|+++. |.+.+++++++|+++.++ ++++||||||+++|.| +.++++++.+...|++|+.++++|++
T Consensus 1 iViKlGGs~l~~~~----~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~~ 75 (221)
T TIGR02076 1 IVISLGGSVLSPEI----DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAM 75 (221)
T ss_pred CEEEechhhcCCCC----CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHHH
Confidence 58999999998642 789999999999999876 8999999999999998 77788888888999999999999999
Q ss_pred HHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 172 FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 172 lL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
++...|+..++|... ++..++.+.++.|+|||+ +|.+|++|||++|+++|.+++
T Consensus 76 ~l~~ll~~~~~~~~~------------~~~~~~~~~l~~g~ipv~--~G~~~~~s~D~~A~~lA~~l~ 129 (221)
T TIGR02076 76 LLIAALGDDAYPKVP------------ENFEEALEAMSLGKIVVM--GGTHPGHTTDAVAALLAEFSK 129 (221)
T ss_pred HHHHHHHhcCCCCcC------------CCHHHHHHHHHcCCEEEE--cCCCCCCCcHHHHHHHHHHcC
Confidence 999999876776432 134678999999999999 336799999999999999875
No 13
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.86 E-value=5.7e-21 Score=171.98 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=112.7
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccchhHHHHHHHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMN 169 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD~IGMlAT~LN 169 (239)
-.+||||||++|++++ .+.++++|++|+++.+ +++++||||||+++|.+ ..++++|+++...|++|+.++++|
T Consensus 31 ~~~ViKiGGSvitdk~-----~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln 104 (262)
T cd04255 31 DLNVVKIGGQSIIDRG-----AEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQN 104 (262)
T ss_pred CcEEEEeccceecCCc-----HHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 3589999999998653 4789999999999876 68999999999999876 555678999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCC-----------C-CccccchHHHHHHhhh
Q 026370 170 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGT-----------G-NPFFTTDTAAALRCAE 237 (239)
Q Consensus 170 AllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGt-----------g-~P~fTTDt~AAlrA~E 237 (239)
+++++.+|.++|++. +++.+ ..++.++|+.|.|||+.|.. | .|+++||++|+++|.+
T Consensus 105 ~lv~~~~l~~~g~~~----------i~~~~-~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~ 173 (262)
T cd04255 105 AEMLATLLAKHGGSK----------VGHGD-LLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEV 173 (262)
T ss_pred HHHHHHHHHHcCCCc----------ccccc-HHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHH
Confidence 999999998888864 22222 45799999999999997663 2 7999999999999998
Q ss_pred cC
Q 026370 238 IS 239 (239)
Q Consensus 238 i~ 239 (239)
++
T Consensus 174 l~ 175 (262)
T cd04255 174 IG 175 (262)
T ss_pred hC
Confidence 75
No 14
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.85 E-value=2.5e-21 Score=167.78 Aligned_cols=118 Identities=21% Similarity=0.305 Sum_probs=89.3
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccchhHHHHHHHHHHHHH
Q 026370 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIF 172 (239)
Q Consensus 94 VIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD~IGMlAT~LNAll 172 (239)
|||||||.+ .+ +..+.+.|+++. |++++||+||||++|-+ ..++++|+++..+|+|||+||+|||++
T Consensus 1 vvKiGGsl~-~~---------~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~ 68 (203)
T cd04240 1 VVKIGGSLI-RE---------AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYL 68 (203)
T ss_pred CEEEccccc-cc---------HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 689999954 22 345555555542 78999999999996665 445689999999999999999999999
Q ss_pred HHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCC------Cc---cccchHHHHHHhhhcC
Q 026370 173 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG------NP---FFTTDTAAALRCAEIS 239 (239)
Q Consensus 173 L~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg------~P---~fTTDt~AAlrA~Ei~ 239 (239)
|++.+...+ .++..++..+++.|+|||+.-.+- .| ++|||++|+++|.+++
T Consensus 69 l~~~~~~~~----------------~~~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~ 128 (203)
T cd04240 69 LADLEPRLV----------------ARTLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLG 128 (203)
T ss_pred HhccCCccc----------------cCCHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcC
Confidence 986443322 123468999999999999842211 11 3899999999999875
No 15
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.82 E-value=2.1e-19 Score=165.84 Aligned_cols=148 Identities=22% Similarity=0.293 Sum_probs=115.6
Q ss_pred cEEEEEeccccccCCCCC---CCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhh----h----hcCCCccchh
Q 026370 91 QRVLLKVSGEALAGDHTQ---NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA----G----NSGLDRSSAD 159 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~---gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~A----r----~~Gi~r~~aD 159 (239)
||||||||||+|..+++. .++.+.++++|++|+++.++||||+||||||+.++...+. + .+.++...++
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A~ 80 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGAM 80 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHHh
Confidence 699999999999965433 3668999999999999999999999999999988875332 1 1346777799
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEecccc------------C--cccccch-------------------------
Q 026370 160 YIGMLATVMNAIFLQATMESIGIPTRVQTAFRM------------S--EVAEPYI------------------------- 200 (239)
Q Consensus 160 ~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i------------~--~i~e~y~------------------------- 200 (239)
..||+.+.+ ..+|+..|.++|++..+.+.+.. + .+-..|+
T Consensus 81 ~qg~lg~~~-~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rr 159 (310)
T TIGR00746 81 SQGMIGYML-QQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRR 159 (310)
T ss_pred hHHHHHHHH-HHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceE
Confidence 999999999 89999999988876655433222 1 1111121
Q ss_pred ------------HHHHHHHHhCCCEEEEeCCCCCccc-------------cchHHHHHHhhhcC
Q 026370 201 ------------RRRAVRHLEKGRVVIFAAGTGNPFF-------------TTDTAAALRCAEIS 239 (239)
Q Consensus 201 ------------~~ea~~~L~~G~IvVfagGtg~P~f-------------TTDt~AAlrA~Ei~ 239 (239)
.+.++.+|+.|.|||+++|||.|.+ ..|++|+++|.+++
T Consensus 160 vv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~ 223 (310)
T TIGR00746 160 VVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVN 223 (310)
T ss_pred eecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhC
Confidence 2345568999999999999999975 89999999999875
No 16
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.80 E-value=6.7e-19 Score=162.17 Aligned_cols=149 Identities=24% Similarity=0.321 Sum_probs=114.3
Q ss_pred ccEEEEEeccccccCCCCCC-CCHHHHHHHHHHHHHHHhCCceEEEEECC----ChhhhhhhhhhhcC-------CCccc
Q 026370 90 WQRVLLKVSGEALAGDHTQN-IDPKITMAIAREVASVTRLGIEVAIVVGG----GNIFRGASAAGNSG-------LDRSS 157 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~g-id~~~l~~iA~~I~~l~~~G~~I~IV~GG----GniaRg~~~Ar~~G-------i~r~~ 157 (239)
.||+||||||++|.++++.+ +|.+.++.+|++|+++.+.|++|+||||| |+++++.....+++ ++...
T Consensus 2 ~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (314)
T PRK12353 2 MKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVCG 81 (314)
T ss_pred CcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHHH
Confidence 47999999999999765443 99999999999999999999999999999 88988875443332 44555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccc------------cC--------------ccccc------------c
Q 026370 158 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR------------MS--------------EVAEP------------Y 199 (239)
Q Consensus 158 aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~------------i~--------------~i~e~------------y 199 (239)
++..||+.+.++ ..+...|..++++..+++.+. .+ ++++. |
T Consensus 82 a~~qg~l~~~l~-~~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (314)
T PRK12353 82 AMSQGYIGYHLQ-NALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGY 160 (314)
T ss_pred HHHhHHHHHHHH-HHHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCcee
Confidence 778999999999 667778888777443332221 10 00111 2
Q ss_pred -------------hHHHHHHHHhCCCEEEEeCCCCCccccc-------------hHHHHHHhhhcC
Q 026370 200 -------------IRRRAVRHLEKGRVVIFAAGTGNPFFTT-------------DTAAALRCAEIS 239 (239)
Q Consensus 200 -------------~~~ea~~~L~~G~IvVfagGtg~P~fTT-------------Dt~AAlrA~Ei~ 239 (239)
+.+.++++|+.|.|||++||||.|.+.+ |++|+++|.+++
T Consensus 161 r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~ 226 (314)
T PRK12353 161 RRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVD 226 (314)
T ss_pred EeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhC
Confidence 1355666799999999999999998777 999999999875
No 17
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.73 E-value=5.6e-17 Score=142.67 Aligned_cols=144 Identities=19% Similarity=0.253 Sum_probs=107.1
Q ss_pred EEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc--cchhHHHHHHHHH
Q 026370 92 RVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR--SSADYIGMLATVM 168 (239)
Q Consensus 92 rIVIKLGGsaL~~d~-~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r--~~aD~IGMlAT~L 168 (239)
+|||||||++|.+++ +..+|.+.+++++++|+++. |++++||||||+++++ .++++|++. ...|..|+..+.+
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~--~~~~~g~~~g~~~~~~~~l~~~~~ 76 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHP--KAKEYGLPDGDGSFSAEGVAETHE 76 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCH--HHHHhCCCcCCCchhhhhHHHHHH
Confidence 489999999998643 44599999999999999976 8999999999999655 455688863 3456677766644
Q ss_pred HH----HHHHHHHHhcCCCceEEecccc----CcccccchHHHHHHHHhCCCEEEEeC------CCCCccccchHHHHHH
Q 026370 169 NA----IFLQATMESIGIPTRVQTAFRM----SEVAEPYIRRRAVRHLEKGRVVIFAA------GTGNPFFTTDTAAALR 234 (239)
Q Consensus 169 NA----llL~~aL~~~gi~a~v~SAi~i----~~i~e~y~~~ea~~~L~~G~IvVfag------Gtg~P~fTTDt~AAlr 234 (239)
+. ..+..+|.++|+++..+++..+ .+.....+.+.+.++|+.|.|||+.+ +++...+++|++|+++
T Consensus 77 ~~~~ln~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~l 156 (252)
T cd04241 77 AMLELNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVEL 156 (252)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHH
Confidence 33 2456667777998877654332 11223456888999999999999853 1224577999999999
Q ss_pred hhhcC
Q 026370 235 CAEIS 239 (239)
Q Consensus 235 A~Ei~ 239 (239)
|.+++
T Consensus 157 A~~l~ 161 (252)
T cd04241 157 AKALK 161 (252)
T ss_pred HHHcC
Confidence 99875
No 18
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.60 E-value=1.5e-14 Score=125.04 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=110.9
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhh--------hcCCCccchhHHHHHH
Q 026370 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG--------NSGLDRSSADYIGMLA 165 (239)
Q Consensus 94 VIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar--------~~Gi~r~~aD~IGMlA 165 (239)
||||||++|..+ +.++++++.|+++.+.|++++||||||...+...... ....+....|.+...+
T Consensus 1 ViKiGGs~l~~~-------~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (248)
T cd02115 1 VIKFGGSSVSSE-------ERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMG 73 (248)
T ss_pred CEeeCccccCCH-------HHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHH
Confidence 689999998643 5899999999999888899999999999987752211 2345566788999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccccC---------cccccchHHHHHHHHhCCCEEEEeCCCCC--------ccccch
Q 026370 166 TVMNAIFLQATMESIGIPTRVQTAFRMS---------EVAEPYIRRRAVRHLEKGRVVIFAAGTGN--------PFFTTD 228 (239)
Q Consensus 166 T~LNAllL~~aL~~~gi~a~v~SAi~i~---------~i~e~y~~~ea~~~L~~G~IvVfagGtg~--------P~fTTD 228 (239)
..+++.++..+|...|+++..++..... .....++.+.+.++|+.|.|||+.|..+. +..++|
T Consensus 74 ~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD 153 (248)
T cd02115 74 EGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSD 153 (248)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHH
Confidence 9999999999999999998777543321 23344567899999999999999755442 579999
Q ss_pred HHHHHHhhhcC
Q 026370 229 TAAALRCAEIS 239 (239)
Q Consensus 229 t~AAlrA~Ei~ 239 (239)
++|+++|..++
T Consensus 154 ~~A~~lA~~l~ 164 (248)
T cd02115 154 STAALLAAALK 164 (248)
T ss_pred HHHHHHHHHcC
Confidence 99999998875
No 19
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.57 E-value=3.9e-14 Score=132.27 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=108.8
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhh-h-hhhhh---cCCCccchhHHHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-A-SAAGN---SGLDRSSADYIGMLA 165 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg-~-~~Ar~---~Gi~r~~aD~IGMlA 165 (239)
+++|+|+||+++.. .+.+++++++|+++.+.|++++||||||.-... . +++++ ...+....|.++...
T Consensus 1 ~~iViK~GGs~~~~-------~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~G 73 (401)
T TIGR00656 1 ELIVQKFGGTSVGS-------GERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHG 73 (401)
T ss_pred CcEEEEECCcCcCC-------HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHH
Confidence 46899999999863 468999999999998899999999999655444 3 33321 123455589999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEecccc----------CcccccchHHHHHHHHhCCCEEEEeCCCC---Cccccc-----
Q 026370 166 TVMNAIFLQATMESIGIPTRVQTAFRM----------SEVAEPYIRRRAVRHLEKGRVVIFAAGTG---NPFFTT----- 227 (239)
Q Consensus 166 T~LNAllL~~aL~~~gi~a~v~SAi~i----------~~i~e~y~~~ea~~~L~~G~IvVfagGtg---~P~fTT----- 227 (239)
.++|+.++..+|+++|+++..+++... .++.+.+..+.+.++++.|.|||++|..| +...||
T Consensus 74 e~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~ 153 (401)
T TIGR00656 74 ERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGG 153 (401)
T ss_pred HHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCc
Confidence 999999999999999999888753322 23334444488999999999999965433 445555
Q ss_pred -hHHHHHHhhhcC
Q 026370 228 -DTAAALRCAEIS 239 (239)
Q Consensus 228 -Dt~AAlrA~Ei~ 239 (239)
|+.|+++|..++
T Consensus 154 sD~~A~~lA~~l~ 166 (401)
T TIGR00656 154 SDYTAALLAAALK 166 (401)
T ss_pred HHHHHHHHHHHcC
Confidence 999999999874
No 20
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.54 E-value=1.9e-13 Score=119.83 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=101.0
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhhh-hhhhhcC--CCccchhHHHHHHHHH
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGA-SAAGNSG--LDRSSADYIGMLATVM 168 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg~-~~Ar~~G--i~r~~aD~IGMlAT~L 168 (239)
+|||+||++|.. .+.+++++++|+++.+.|++++||||| |...+.. +..+... .+....|.+.+...++
T Consensus 2 iViK~GGs~l~~-------~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~ 74 (239)
T cd04246 2 IVQKFGGTSVAD-------IERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQI 74 (239)
T ss_pred EEEEECccccCC-------HHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHH
Confidence 799999999863 468999999999998889999999984 6665554 4332211 1344455555555589
Q ss_pred HHHHHHHHHHhcCCCceEEeccccC-----cc----cccchHHHHHHHHhCCCEEEEeCCCC-C--ccc------cchHH
Q 026370 169 NAIFLQATMESIGIPTRVQTAFRMS-----EV----AEPYIRRRAVRHLEKGRVVIFAAGTG-N--PFF------TTDTA 230 (239)
Q Consensus 169 NAllL~~aL~~~gi~a~v~SAi~i~-----~i----~e~y~~~ea~~~L~~G~IvVfagGtg-~--P~f------TTDt~ 230 (239)
|+.++...|.+.|+++..++..... .. ....+.+.+.+++++|.|||++|..+ + ..+ .+|++
T Consensus 75 ~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~ 154 (239)
T cd04246 75 SAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTT 154 (239)
T ss_pred HHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHH
Confidence 9999999999999998777544321 11 11125688999999999999976533 2 233 36999
Q ss_pred HHHHhhhcC
Q 026370 231 AALRCAEIS 239 (239)
Q Consensus 231 AAlrA~Ei~ 239 (239)
|+++|.+++
T Consensus 155 A~~lA~~l~ 163 (239)
T cd04246 155 AVALAAALK 163 (239)
T ss_pred HHHHHHHcC
Confidence 999999875
No 21
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.52 E-value=4.7e-13 Score=117.58 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=99.9
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhhh-hhhhhcCCCccchhHHHHHHH---H
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGA-SAAGNSGLDRSSADYIGMLAT---V 167 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg~-~~Ar~~Gi~r~~aD~IGMlAT---~ 167 (239)
+|||+||++|. |.+.+++++++|+++.+.|++++||||| |...+.. +.++++. .+...+.+.++++ +
T Consensus 2 iViK~GGs~l~-------~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~-~~~~~~~~~~i~a~Ge~ 73 (239)
T cd04261 2 IVQKFGGTSVA-------SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS-PRPPARELDVLLSTGEQ 73 (239)
T ss_pred EEEEECCcccC-------CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc-cCCCHHHHHHHHHHHHH
Confidence 79999999985 3578999999999999889999999997 6655554 4433332 1222333444444 8
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCccc-c--------cchHHHHHHHHhCCCEEEEeCCCCCc---cc------cchH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVA-E--------PYIRRRAVRHLEKGRVVIFAAGTGNP---FF------TTDT 229 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~-e--------~y~~~ea~~~L~~G~IvVfagGtg~P---~f------TTDt 229 (239)
+|+.++...|++.|+++..+++....-+. + ..+.+.+.+++++|.|||++|..+.+ .+ .+|+
T Consensus 74 ~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~ 153 (239)
T cd04261 74 VSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDT 153 (239)
T ss_pred HHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHH
Confidence 99999999999999998777554321110 1 12458899999999999997663322 11 5899
Q ss_pred HHHHHhhhcC
Q 026370 230 AAALRCAEIS 239 (239)
Q Consensus 230 ~AAlrA~Ei~ 239 (239)
+|+++|..++
T Consensus 154 ~A~~lA~~l~ 163 (239)
T cd04261 154 SAVALAAALG 163 (239)
T ss_pred HHHHHHHHcC
Confidence 9999998875
No 22
>PRK12354 carbamate kinase; Reviewed
Probab=99.47 E-value=7.8e-13 Score=122.52 Aligned_cols=144 Identities=26% Similarity=0.335 Sum_probs=94.4
Q ss_pred cEEEEEeccccccCCCCC-CCC--HHHHHHHHHHHHHHHhCCceEEEEECCCh----hhhhhhhhhh---cCCCccchh-
Q 026370 91 QRVLLKVSGEALAGDHTQ-NID--PKITMAIAREVASVTRLGIEVAIVVGGGN----IFRGASAAGN---SGLDRSSAD- 159 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~-gid--~~~l~~iA~~I~~l~~~G~~I~IV~GGGn----iaRg~~~Ar~---~Gi~r~~aD- 159 (239)
+|||||||||+|...++. .++ .+.+++.|++|+++.+ ||+|+||||||. +....+.++. +.++.--+.
T Consensus 1 ~~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~s 79 (307)
T PRK12354 1 MRIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAET 79 (307)
T ss_pred CeEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhcccc
Confidence 589999999999875433 355 5599999999999998 899999999965 4555544432 344433333
Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCceE---E-----eccccCc--c--------------------------------
Q 026370 160 --YIGMLATVMNAIFLQATMESIGIPTRV---Q-----TAFRMSE--V-------------------------------- 195 (239)
Q Consensus 160 --~IGMlAT~LNAllL~~aL~~~gi~a~v---~-----SAi~i~~--i-------------------------------- 195 (239)
+||.+.+ ++ |...|.+..+-+.+ + +||..+. |
T Consensus 80 qg~iGy~l~--q~--l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~ 155 (307)
T PRK12354 80 EGMIGYMLE--QE--LGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVP 155 (307)
T ss_pred cchHHHHHH--HH--HHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEec
Confidence 5665443 22 23333222222111 1 3443321 1
Q ss_pred ----cccchHHHHHHHHhCCCEEEEeCCCCCccc--------------cchHHHHHHhhhcC
Q 026370 196 ----AEPYIRRRAVRHLEKGRVVIFAAGTGNPFF--------------TTDTAAALRCAEIS 239 (239)
Q Consensus 196 ----~e~y~~~ea~~~L~~G~IvVfagGtg~P~f--------------TTDt~AAlrA~Ei~ 239 (239)
.+-...+.++.+|+.|.|||.+||||.|-. ..|.+|+++|.+++
T Consensus 156 SP~P~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~ 217 (307)
T PRK12354 156 SPRPKRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLD 217 (307)
T ss_pred CCCCcceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcC
Confidence 111346778899999999999999999922 34999999999875
No 23
>PRK06635 aspartate kinase; Reviewed
Probab=99.45 E-value=1.2e-12 Score=122.32 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=102.6
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhhh-hhhhhcC--CCccchhHHHHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGA-SAAGNSG--LDRSSADYIGMLAT 166 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg~-~~Ar~~G--i~r~~aD~IGMlAT 166 (239)
+|+|+|+||++|. |.+.+++++++|+++.+.|++++||||| |...+.. +.++... .+....|.+.....
T Consensus 2 ~~iViK~GGs~l~-------~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ge 74 (404)
T PRK06635 2 ALIVQKFGGTSVG-------DVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTGE 74 (404)
T ss_pred CeEEEeECCcccC-------CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhhH
Confidence 4799999999985 3579999999999998889999998887 4444433 3333211 13344555555555
Q ss_pred HHHHHHHHHHHHhcCCCceEEeccccCcc---------cccchHHHHHHHHhCCCEEEEeCCCCCc---cc------cch
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRMSEV---------AEPYIRRRAVRHLEKGRVVIFAAGTGNP---FF------TTD 228 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i~~i---------~e~y~~~ea~~~L~~G~IvVfagGtg~P---~f------TTD 228 (239)
++|+.++..+|++.|+++..+++....-+ ....+.+.+.+++++|.|||++|..|.+ .+ .+|
T Consensus 75 ~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD 154 (404)
T PRK06635 75 QVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGSD 154 (404)
T ss_pred HHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCChH
Confidence 89999999999999999877765433111 1223568899999999999997654433 22 479
Q ss_pred HHHHHHhhhcC
Q 026370 229 TAAALRCAEIS 239 (239)
Q Consensus 229 t~AAlrA~Ei~ 239 (239)
+.|+++|..++
T Consensus 155 ~~A~~lA~~l~ 165 (404)
T PRK06635 155 TTAVALAAALK 165 (404)
T ss_pred HHHHHHHHHhC
Confidence 99999998874
No 24
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.45 E-value=2.7e-12 Score=116.16 Aligned_cols=140 Identities=16% Similarity=0.280 Sum_probs=96.3
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCcc------chhHHHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS------SADYIGM 163 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~------~aD~IGM 163 (239)
+|||||||||++|++++ .++.+++..++++|+++.+ +|+|+||++|| +++|+.. +++.+. .++.+|+
T Consensus 8 ~~riVIKlG~Svit~~~--~~~~~~~~~l~~~i~~l~~-~~~vilVssGa-va~g~~~---~~~~~~~~~~~qa~aaiGq 80 (264)
T PTZ00489 8 VKRIVVKVGSSILVDNQ--EIAAHRIEALCRFIADLQT-KYEVILVTSGA-VAAGYTK---KEMDKSYVPNKQALASMGQ 80 (264)
T ss_pred CCEEEEEeccceeeCCC--CcCHHHHHHHHHHHHHHhc-CCeEEEEecCh-HhcChhh---cCCCccccHHHHHHHHhCH
Confidence 68999999999998643 4788999999999999876 69999999777 9999742 344332 2334444
Q ss_pred HHHHHHHHHHHHHHHhcCCCce-EE-eccccCc-ccccchHHHHHHHHhCCCEEEEeCCCCCccc-----cchHHHHHHh
Q 026370 164 LATVMNAIFLQATMESIGIPTR-VQ-TAFRMSE-VAEPYIRRRAVRHLEKGRVVIFAAGTGNPFF-----TTDTAAALRC 235 (239)
Q Consensus 164 lAT~LNAllL~~aL~~~gi~a~-v~-SAi~i~~-i~e~y~~~ea~~~L~~G~IvVfagGtg~P~f-----TTDt~AAlrA 235 (239)
.++|.+. ...|..+|+++- +. ++..... --.....+.+.+.|+.|.|||+.+....|++ ++|++||+.|
T Consensus 81 --~~L~~~y-~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA 157 (264)
T PTZ00489 81 --PLLMHMY-YTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVA 157 (264)
T ss_pred --HHHHHHH-HHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHH
Confidence 1344444 344566687642 22 3222211 1111246778899999999999554455654 9999999999
Q ss_pred hhcC
Q 026370 236 AEIS 239 (239)
Q Consensus 236 ~Ei~ 239 (239)
.+++
T Consensus 158 ~~l~ 161 (264)
T PTZ00489 158 HHFK 161 (264)
T ss_pred HHhC
Confidence 8764
No 25
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.42 E-value=4e-13 Score=115.72 Aligned_cols=140 Identities=21% Similarity=0.306 Sum_probs=90.9
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccch-------hHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA-------DYIGM 163 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~a-------D~IGM 163 (239)
|++||||||++|...+ .+ ++++++.|+.+.+.|++++||||||.+.+.... .+|+..... ...+.
T Consensus 1 k~~ViK~GGs~l~~~~-----~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~--~~~~~~~~~~~~r~~~~~~~~ 72 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKD-----EE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLE--KYGIEPKFVDGSRVTDIETGL 72 (242)
T ss_dssp SEEEEEE-HHGHSSHS-----HH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--HCTHTTSEETHHCHBHHHHHH
T ss_pred CeEEEEECchhhCCch-----HH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHH--hccCCcccchhhhhhhhhhhH
Confidence 6899999999997532 34 999999999999999999999999999777532 355443221 12222
Q ss_pred HHH-----HHHH-----HHHHHHHHhcCCCceEEe--cccc---CcccccchHHHHHHHHhCCCEEEEeCCC-----CC-
Q 026370 164 LAT-----VMNA-----IFLQATMESIGIPTRVQT--AFRM---SEVAEPYIRRRAVRHLEKGRVVIFAAGT-----GN- 222 (239)
Q Consensus 164 lAT-----~LNA-----llL~~aL~~~gi~a~v~S--Ai~i---~~i~e~y~~~ea~~~L~~G~IvVfagGt-----g~- 222 (239)
..+ .+|- .++ ..++..+.+..-.. ...+ ......++.+.+.+.|++|.|||+.|.. |.
T Consensus 73 ~~~~~~~~~l~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~ 151 (242)
T PF00696_consen 73 IITMAAAAELNRDALLDEIV-SAGERLGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEV 151 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHCTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTE
T ss_pred HHHHHHhhccccchhHHHHH-HhhhhhhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCc
Confidence 222 3344 333 33555554321110 0000 0001135678999999999999997554 22
Q ss_pred ---ccccchHHHHHHhhhcC
Q 026370 223 ---PFFTTDTAAALRCAEIS 239 (239)
Q Consensus 223 ---P~fTTDt~AAlrA~Ei~ 239 (239)
+..++|++|+++|..++
T Consensus 152 ~~~~~~~sD~~A~~lA~~l~ 171 (242)
T PF00696_consen 152 TTLGNVSSDYIAALLAAALG 171 (242)
T ss_dssp EEEEEETHHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHhC
Confidence 58899999999999875
No 26
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.41 E-value=5.3e-12 Score=118.48 Aligned_cols=142 Identities=25% Similarity=0.312 Sum_probs=94.4
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc---hhHHHHHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS---ADYIGMLATV 167 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~---aD~IGMlAT~ 167 (239)
+|+|||+||++|++++.. +|.+++++++++|+++.++|++++||||||.. .|.. .+|+.+.. .+.-.+.++-
T Consensus 1 ~riVIKiGgs~l~~~~~~-~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~-~g~~---~lg~~~~~~~l~~~qa~aa~G 75 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSGS-LDRSHIAELVEQVAALHAAGHEVVIVSSGAIA-AGFE---ALGLPERPKTLAEKQALAAVG 75 (363)
T ss_pred CeEEEEeccceEeCCCCC-cCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHh-cCcc---ccCCCCCccchHHHHHHHHhC
Confidence 589999999999975433 99999999999999999999999999998842 2322 34555432 2333333331
Q ss_pred --HHHHHHHHHHHhcCCCce-EEeccccCcccc--cc--hHHHHHHHHhCCCEEEEe-----CCCCCccccchHHHHHHh
Q 026370 168 --MNAIFLQATMESIGIPTR-VQTAFRMSEVAE--PY--IRRRAVRHLEKGRVVIFA-----AGTGNPFFTTDTAAALRC 235 (239)
Q Consensus 168 --LNAllL~~aL~~~gi~a~-v~SAi~i~~i~e--~y--~~~ea~~~L~~G~IvVfa-----gGtg~P~fTTDt~AAlrA 235 (239)
..-.+....|..+|+++. ++ +..+.+.+ .| ..+.+..+|+.|.|||+. +.+...+.++|++||++|
T Consensus 76 q~~l~~~~~~~l~~~Gi~~aqil--lt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA 153 (363)
T TIGR01027 76 QVRLMQLYEQLFSQYGIKVAQIL--LTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVA 153 (363)
T ss_pred hHHHHHHHHHHHHHcCCeEEEEE--EeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHH
Confidence 112244577888898842 21 01111221 11 124456778999999996 223355779999999999
Q ss_pred hhcC
Q 026370 236 AEIS 239 (239)
Q Consensus 236 ~Ei~ 239 (239)
.+++
T Consensus 154 ~~l~ 157 (363)
T TIGR01027 154 ILVG 157 (363)
T ss_pred HHcC
Confidence 9875
No 27
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.40 E-value=7.7e-12 Score=118.06 Aligned_cols=140 Identities=24% Similarity=0.391 Sum_probs=95.7
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCC-CccchhHHHHHHH-
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL-DRSSADYIGMLAT- 166 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi-~r~~aD~IGMlAT- 166 (239)
+++|||||+||++|..+. ..+|.+.+.++|++|+++.+.|++++||+||| +++|.. ++++ ++......-.++.
T Consensus 4 ~~kriVIKiGgs~L~~~~-~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~---~l~~~~~~~~~~~qalaav 78 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPHH-QGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYH---KLGFIDRPSVPEKQAMAAA 78 (368)
T ss_pred CCcEEEEEEchhhccCCC-CCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCcc---ccCCCCCCCccHHHHHHHh
Confidence 368999999999998643 35999999999999999999999999999999 777762 2442 2221111122222
Q ss_pred ---HHHHHHHHHHHHhcCCCce-EEeccccCccc--ccch--HHHHHHHHhCCCEEEEeCCCCCcccc--------chHH
Q 026370 167 ---VMNAIFLQATMESIGIPTR-VQTAFRMSEVA--EPYI--RRRAVRHLEKGRVVIFAAGTGNPFFT--------TDTA 230 (239)
Q Consensus 167 ---~LNAllL~~aL~~~gi~a~-v~SAi~i~~i~--e~y~--~~ea~~~L~~G~IvVfagGtg~P~fT--------TDt~ 230 (239)
.++. .+..+|..+|+++. ++ +.-+.+. +.|. .+.+.++|+.|.|||+.. +..++ .|++
T Consensus 79 Gq~~l~~-~~~~~f~~~g~~~aqvL--lT~~d~~~~~~y~n~~~~l~~LL~~g~IPIine---nD~v~~~el~~GdnD~l 152 (368)
T PRK13402 79 GQGLLMA-TWSKLFLSHGFPAAQLL--LTHGDLRDRERYINIRNTINVLLERGILPIINE---NDAVTTDRLKVGDNDNL 152 (368)
T ss_pred hHHHHHH-HHHHHHHHCCCeEEEEE--EecchhhhHHHHHHHHHHHHHHHHCCcEEEEeC---CCcEeecccccCChHHH
Confidence 2233 36777888899864 22 1122332 1231 356777899999999942 23344 4999
Q ss_pred HHHHhhhcC
Q 026370 231 AALRCAEIS 239 (239)
Q Consensus 231 AAlrA~Ei~ 239 (239)
||++|..++
T Consensus 153 Aa~vA~~l~ 161 (368)
T PRK13402 153 SAMVAALAD 161 (368)
T ss_pred HHHHHHHhC
Confidence 999998874
No 28
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.39 E-value=3.6e-12 Score=114.97 Aligned_cols=141 Identities=23% Similarity=0.376 Sum_probs=100.6
Q ss_pred EEEEeccccccC-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCC--CccchhHHHHHHH---
Q 026370 93 VLLKVSGEALAG-DHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL--DRSSADYIGMLAT--- 166 (239)
Q Consensus 93 IVIKLGGsaL~~-d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi--~r~~aD~IGMlAT--- 166 (239)
+|||||||+|+. ++++.++.++++++|.+|.. ... -+++||||||++ ||..|+++++ .+......|+.-|
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~-~~~-~~livVHGgGSF--GHp~Ak~~~~~~~~~~~s~~G~~~~~~a 78 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN-GKP-EKLIVVHGGGSF--GHPAAKEFGLEGLKNYLSPLGFSLTHLA 78 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc-CCc-ccEEEEecCccc--cCHHHHHhCccccccccCccchHHHHHH
Confidence 789999999996 56666999999999999985 122 478899999999 9988889998 2334456777666
Q ss_pred --HHHHHHHHHHHHhcCCCceE-Ee-cc--ccCcccccchHHHHHHHHhCCCEEEEe------CCCCCccccchHHHHHH
Q 026370 167 --VMNAIFLQATMESIGIPTRV-QT-AF--RMSEVAEPYIRRRAVRHLEKGRVVIFA------AGTGNPFFTTDTAAALR 234 (239)
Q Consensus 167 --~LNAllL~~aL~~~gi~a~v-~S-Ai--~i~~i~e~y~~~ea~~~L~~G~IvVfa------gGtg~P~fTTDt~AAlr 234 (239)
++|.++.+..++. |+++.. ++ ++ .-+++...| .+.+.++|++|.|||.= .+.|.--.|-|=.+..+
T Consensus 79 m~~L~~~V~~~l~~~-Gv~av~~~P~s~~~~~gr~~~~~-l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~L 156 (252)
T COG1608 79 MLELNSIVVDALLDA-GVRAVSVVPISFSTFNGRILYTY-LEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHL 156 (252)
T ss_pred HHHHHHHHHHHHHhc-CCccccccCcceeecCCceeech-HHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHH
Confidence 6777777665554 887642 31 11 114444444 78899999999999872 12233345667788888
Q ss_pred hhhcC
Q 026370 235 CAEIS 239 (239)
Q Consensus 235 A~Ei~ 239 (239)
|.|++
T Consensus 157 A~~l~ 161 (252)
T COG1608 157 AKELK 161 (252)
T ss_pred HHHhC
Confidence 87753
No 29
>PRK07431 aspartate kinase; Provisional
Probab=99.37 E-value=1.3e-11 Score=121.37 Aligned_cols=140 Identities=24% Similarity=0.335 Sum_probs=104.0
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEEC-CChhhhhh-hhhhhcCCCccchhHHHHHHH---
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG-GGNIFRGA-SAAGNSGLDRSSADYIGMLAT--- 166 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~G-GGniaRg~-~~Ar~~Gi~r~~aD~IGMlAT--- 166 (239)
++|+|+||+++. |.+.++++++.|+++.+.|++++|||| +|++.+.. .+++++. ++...+...++++
T Consensus 3 ~iViKfGGss~~-------~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~t-~~~~~~~~~~~ls~Ge 74 (587)
T PRK07431 3 LIVQKFGGTSVG-------SVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEIS-SNPPRREMDMLLSTGE 74 (587)
T ss_pred eEEEEECchhcC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHhc-cCCCHHHHHHHHHHhH
Confidence 789999999984 567999999999999899999999999 58998886 4443222 3444556677766
Q ss_pred HHHHHHHHHHHHhcCCCceEEeccccCccccc---------chHHHHHHHHhCCCEEEEeCCCCC--c--c-cc------
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YIRRRAVRHLEKGRVVIFAAGTGN--P--F-FT------ 226 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~---------y~~~ea~~~L~~G~IvVfagGtg~--P--~-fT------ 226 (239)
++|+.+++.+|++.|+++..+++....-+.+. ...+.+.++++.|.|||+.|-.|. . + .|
T Consensus 75 ~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrgg 154 (587)
T PRK07431 75 QVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGG 154 (587)
T ss_pred HHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCc
Confidence 77999999999999999888865443211111 134688899999999999652121 2 1 23
Q ss_pred chHHHHHHhhhcC
Q 026370 227 TDTAAALRCAEIS 239 (239)
Q Consensus 227 TDt~AAlrA~Ei~ 239 (239)
+|++|+++|..++
T Consensus 155 sD~~A~~lA~~l~ 167 (587)
T PRK07431 155 SDTSAVALAAALG 167 (587)
T ss_pred hHHHHHHHHHHcC
Confidence 5999999998764
No 30
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.33 E-value=1.9e-11 Score=109.63 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=95.1
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc--------------
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS-------------- 157 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~-------------- 157 (239)
++|||+||+++... +++++.|+.+.+.|.+++||||||.+ .+++++++|++...
T Consensus 1 ~~ViK~GG~~l~~~----------~~~~~~i~~l~~~g~~~VlVHGgg~~--i~~~~~~~gi~~~~~~~~~g~~~rvt~~ 68 (268)
T PRK14058 1 MIVVKIGGSVGIDP----------EDALIDVASLWADGERVVLVHGGSDE--VNELLERLGIEPRFVTSPSGVTSRYTDR 68 (268)
T ss_pred CEEEEEChHHhhCc----------HHHHHHHHHHHHCCCCEEEEeCCHHH--HHHHHHHcCCCceEEeCCCCCceEeCCH
Confidence 58999999998643 24588888888889999999999998 44455567764432
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCc--------------------------ccccchHHHHHHHHh
Q 026370 158 --ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE--------------------------VAEPYIRRRAVRHLE 209 (239)
Q Consensus 158 --aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~--------------------------i~e~y~~~ea~~~L~ 209 (239)
.|.+=+-..++|..+++ +|.+.|+++..++....+- -....+.+.++++++
T Consensus 69 ~~l~~~~~a~~~ln~~lv~-~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~ 147 (268)
T PRK14058 69 ETLEVFIMAMALINKQLVE-RLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLK 147 (268)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHH
Confidence 12222222388999886 7888899877765432210 011235788999999
Q ss_pred CCCEEEEeC----CCCCcc-ccchHHHHHHhhhcC
Q 026370 210 KGRVVIFAA----GTGNPF-FTTDTAAALRCAEIS 239 (239)
Q Consensus 210 ~G~IvVfag----Gtg~P~-fTTDt~AAlrA~Ei~ 239 (239)
.|.|||+.+ ..|..+ ..+|.+|++.|..++
T Consensus 148 ~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~ 182 (268)
T PRK14058 148 AGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALK 182 (268)
T ss_pred CCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcC
Confidence 999999964 233444 689999999998764
No 31
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.33 E-value=2.6e-11 Score=106.09 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=94.4
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-ChhhhhhhhhhhcCCCccchhHHHHHHHHHHH
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGLDRSSADYIGMLATVMNA 170 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNA 170 (239)
++|+|+||+.|..+ +.+++++++|+++ +.|++++|||+| +.+-+.... ++ .+--..-.+|+
T Consensus 1 ~iViK~GGs~l~~~-------~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~---~~-------~~~s~Ge~~~~ 62 (227)
T cd04234 1 MVVQKFGGTSVASA-------ERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIE---LA-------LLLSFGERLSA 62 (227)
T ss_pred CEEEEECccccCCH-------HHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHH---HH-------HHHHHHHHHHH
Confidence 47999999998643 5899999999999 889999999965 454333311 11 23333348899
Q ss_pred HHHHHHHHhcCCCceEEeccccCcc---------cccchHHHHHHHHhC-CCEEEEeCCCC---Cccc------cchHHH
Q 026370 171 IFLQATMESIGIPTRVQTAFRMSEV---------AEPYIRRRAVRHLEK-GRVVIFAAGTG---NPFF------TTDTAA 231 (239)
Q Consensus 171 llL~~aL~~~gi~a~v~SAi~i~~i---------~e~y~~~ea~~~L~~-G~IvVfagGtg---~P~f------TTDt~A 231 (239)
.++..+|++.|+++..+++..+.-. ....+.+.+.+++++ |.|||+.|..+ +..+ .+|++|
T Consensus 63 ~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A 142 (227)
T cd04234 63 RLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSA 142 (227)
T ss_pred HHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHH
Confidence 9999999999999887765543221 222357888899999 99999955322 3333 379999
Q ss_pred HHHhhhcC
Q 026370 232 ALRCAEIS 239 (239)
Q Consensus 232 AlrA~Ei~ 239 (239)
+++|..++
T Consensus 143 ~~lA~~l~ 150 (227)
T cd04234 143 AALAAALG 150 (227)
T ss_pred HHHHHHhC
Confidence 99998874
No 32
>PRK09411 carbamate kinase; Reviewed
Probab=99.32 E-value=2.4e-11 Score=112.27 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=103.4
Q ss_pred cEEEEEeccccccCCCCCC-CCH--HHHHHHHHHHHHHHhCCceEEEEECC----ChhhhhhhhhhhcCCCccchhHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQN-IDP--KITMAIAREVASVTRLGIEVAIVVGG----GNIFRGASAAGNSGLDRSSADYIGM 163 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~g-id~--~~l~~iA~~I~~l~~~G~~I~IV~GG----GniaRg~~~Ar~~Gi~r~~aD~IGM 163 (239)
|||||+|||++|..+++.. .+. +.++..|++|+++.++ |+++|+||+ |++++..+++++. +..-.|..|-
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~~--~~~pld~~~a 78 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKEV--EPYPLDVLVA 78 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcCC--CCCCchhhhh
Confidence 5899999999998755443 444 4999999999999998 999999999 7888887766543 5555665555
Q ss_pred HHHHHHHHHHHHHHHhcCCCceE---E---------eccccC-c-cc---------------------------------
Q 026370 164 LATVMNAIFLQATMESIGIPTRV---Q---------TAFRMS-E-VA--------------------------------- 196 (239)
Q Consensus 164 lAT~LNAllL~~aL~~~gi~a~v---~---------SAi~i~-~-i~--------------------------------- 196 (239)
+.-=+=+..|+.+|.+.+++..+ + +||.-+ + |-
T Consensus 79 ~sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP 158 (297)
T PRK09411 79 ESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASP 158 (297)
T ss_pred hcccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCC
Confidence 54455566777777766643211 1 222210 0 00
Q ss_pred ---ccchHHHHHHHHhCCCEEEEeCCCCCc----------cccchHHHHHHhhhcC
Q 026370 197 ---EPYIRRRAVRHLEKGRVVIFAAGTGNP----------FFTTDTAAALRCAEIS 239 (239)
Q Consensus 197 ---e~y~~~ea~~~L~~G~IvVfagGtg~P----------~fTTDt~AAlrA~Ei~ 239 (239)
+-.+.+-++.+++.|.|||.+||||.| ....|.+|+.+|.+++
T Consensus 159 ~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~ 214 (297)
T PRK09411 159 QPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQIN 214 (297)
T ss_pred CCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhC
Confidence 011455677889999999999999999 3456789999998874
No 33
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.32 E-value=3.9e-11 Score=108.06 Aligned_cols=144 Identities=18% Similarity=0.202 Sum_probs=97.3
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE-ECCChhhhhhhhhhhcCCCccchhHHHHHHH--
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV-VGGGNIFRGASAAGNSGLDRSSADYIGMLAT-- 166 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV-~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT-- 166 (239)
.+|||+|+||+.|+++. ..+|.+.++++|++|+++.+.|++++|| +|+|.+ |....+..+.+.....+-...++
T Consensus 9 ~~~iViK~Ggs~l~~~~-~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~--g~~~l~~~~~~~~~~~~~a~aa~Gq 85 (266)
T PRK12314 9 AKRIVIKVGSSTLSYEN-GKINLERIEQLVFVISDLMNKGKEVILVSSGAIGA--GLTKLKLDKRPTSLAEKQALAAVGQ 85 (266)
T ss_pred CCEEEEEeCCCeeeCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccc--cceeeccccCCCCHHHHHHHHHHhH
Confidence 36899999999998543 3589999999999999999999999886 887777 44333223333334444444444
Q ss_pred HHHHHHHHHHHHhcCCCc-eEE-eccccCccccc--c--hHHHHHHHHhCCCEEEEeC-C---CC---CccccchHHHHH
Q 026370 167 VMNAIFLQATMESIGIPT-RVQ-TAFRMSEVAEP--Y--IRRRAVRHLEKGRVVIFAA-G---TG---NPFFTTDTAAAL 233 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a-~v~-SAi~i~~i~e~--y--~~~ea~~~L~~G~IvVfag-G---tg---~P~fTTDt~AAl 233 (239)
.+-..++..+|..+|+++ .++ +. +.+-+. | ..+.+.++++.|.|||+.+ + +. .-+-.+|++|++
T Consensus 86 ~~l~~~~~~~~~~~g~~~~q~llT~---~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~ 162 (266)
T PRK12314 86 PELMSLYSKFFAEYGIVVAQILLTR---DDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAI 162 (266)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEec---ccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHH
Confidence 445556778888889875 222 11 111111 1 2456677789999999952 1 11 116789999999
Q ss_pred HhhhcC
Q 026370 234 RCAEIS 239 (239)
Q Consensus 234 rA~Ei~ 239 (239)
+|.+++
T Consensus 163 lA~~l~ 168 (266)
T PRK12314 163 VAKLVK 168 (266)
T ss_pred HHHHhC
Confidence 998874
No 34
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.32 E-value=3.2e-11 Score=110.00 Aligned_cols=146 Identities=15% Similarity=0.171 Sum_probs=92.1
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEE-EEECCChhhhhhhhhhhcCC------------C--
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVA-IVVGGGNIFRGASAAGNSGL------------D-- 154 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~-IV~GGGniaRg~~~Ar~~Gi------------~-- 154 (239)
.||||||+|++.|+++++..++.+.+.++|++|+++.+.|++|+ |++|++.+ |+..++.++. .
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~--G~~~l~~~~~~~~~~~~~~~g~~~~ 85 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAF--GKQRLRHEILLSSSMRQTLKSGQLK 85 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHh--ChHHhhhccccccchhhhccccccc
Confidence 58999999999999765446999999999999999999999999 77787877 4433332221 1
Q ss_pred ---ccchhHHHHHHHHHHHH--HHHHHHHhcCCCc-eEEeccccCccccc----chHHHHHHHHhCCCEEEEeCCC----
Q 026370 155 ---RSSADYIGMLATVMNAI--FLQATMESIGIPT-RVQTAFRMSEVAEP----YIRRRAVRHLEKGRVVIFAAGT---- 220 (239)
Q Consensus 155 ---r~~aD~IGMlAT~LNAl--lL~~aL~~~gi~a-~v~SAi~i~~i~e~----y~~~ea~~~L~~G~IvVfagGt---- 220 (239)
.......-.-|.-+..+ +-+..|..+++++ .++- .-+.+.+. ...+.+.++|+.|.|||+.++.
T Consensus 86 ~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~ll--t~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~ 163 (284)
T cd04256 86 DMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLV--TKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSP 163 (284)
T ss_pred CCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeee--eccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccc
Confidence 11111111111111111 2245677777753 2220 01111111 2345677788999999997411
Q ss_pred -------C---CccccchHHHHHHhhhcC
Q 026370 221 -------G---NPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 221 -------g---~P~fTTDt~AAlrA~Ei~ 239 (239)
+ +.+..+|++|+++|.+++
T Consensus 164 ~~~~~~~~~~~~~i~d~D~lAa~lA~~l~ 192 (284)
T cd04256 164 PPEPDEDLQGVISIKDNDSLAARLAVELK 192 (284)
T ss_pred cccccccccccccccChHHHHHHHHHHcC
Confidence 1 345799999999999875
No 35
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.31 E-value=4e-11 Score=106.35 Aligned_cols=141 Identities=19% Similarity=0.277 Sum_probs=90.3
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-ChhhhhhhhhhhcCCCcc---chhHHHHHHHH
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGLDRS---SADYIGMLATV 167 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg~~~Ar~~Gi~r~---~aD~IGMlAT~ 167 (239)
|+|||+||++|++.+. .++.+.+++++++|+++.++|++++||||| |.+ |.+ .+++... ....-.+.++-
T Consensus 1 ~iViK~GGs~i~~~~~-~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~--g~~---~~~~~~~~~~~~~~~~~~~~G 74 (251)
T cd04242 1 RIVVKVGSSLLTDEDG-GLDLGRLASLVEQIAELRNQGKEVILVSSGAVAA--GRQ---RLGLEKRPKTLPEKQALAAVG 74 (251)
T ss_pred CEEEEeCCCeeeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhh--Chh---hhccCcCCCchhHHHHHHHHh
Confidence 6899999999986433 368999999999999999889999999965 544 221 2333221 12223444443
Q ss_pred HHH--HHHHHHHHhcCCCceEEeccccCccccc--c--hHHHHHHHHhCCCEEEEeCCCC-----CccccchHHHHHHhh
Q 026370 168 MNA--IFLQATMESIGIPTRVQTAFRMSEVAEP--Y--IRRRAVRHLEKGRVVIFAAGTG-----NPFFTTDTAAALRCA 236 (239)
Q Consensus 168 LNA--llL~~aL~~~gi~a~v~SAi~i~~i~e~--y--~~~ea~~~L~~G~IvVfagGtg-----~P~fTTDt~AAlrA~ 236 (239)
+.. .++..+|.++|+++.-. -+.-+.+... + ..+.+.++|+.|.|||+.++.- .=+..+|++|+++|.
T Consensus 75 q~~l~~~~~~~l~~~Gi~~~q~-l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~ 153 (251)
T cd04242 75 QSLLMALYEQLFAQYGIKVAQI-LLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAG 153 (251)
T ss_pred HHHHHHHHHHHHHHcCCeEEEE-EEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHH
Confidence 333 34778888889986211 0111112111 1 1355677789999999952111 114469999999999
Q ss_pred hcC
Q 026370 237 EIS 239 (239)
Q Consensus 237 Ei~ 239 (239)
+++
T Consensus 154 ~l~ 156 (251)
T cd04242 154 LVN 156 (251)
T ss_pred HcC
Confidence 875
No 36
>PRK08210 aspartate kinase I; Reviewed
Probab=99.29 E-value=5.3e-11 Score=111.84 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=100.9
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEE-----CCChhhhhh--hhhh--hcCCCccchhHH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV-----GGGNIFRGA--SAAG--NSGLDRSSADYI 161 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~-----GGGniaRg~--~~Ar--~~Gi~r~~aD~I 161 (239)
+++|+|+||+++... +.++++++.|+++.++|++++||| |||...... ..+. ....++...|.+
T Consensus 2 ~~iViK~GGs~l~~~-------~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~l 74 (403)
T PRK08210 2 KIIVQKFGGTSVSTE-------ERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDLL 74 (403)
T ss_pred CeEEEeECCcccCCH-------HHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHHH
Confidence 479999999998743 468999999999999999988777 333222222 1111 123456677888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEecccc-----Cc----ccccchHHHHHHHHhCCCEEEEeCC---CCCccc----
Q 026370 162 GMLATVMNAIFLQATMESIGIPTRVQTAFRM-----SE----VAEPYIRRRAVRHLEKGRVVIFAAG---TGNPFF---- 225 (239)
Q Consensus 162 GMlAT~LNAllL~~aL~~~gi~a~v~SAi~i-----~~----i~e~y~~~ea~~~L~~G~IvVfagG---tg~P~f---- 225 (239)
.....++++.++..+|.+.|+++..++.... +. -....+.+.+.+++++|.|||++|- +.+...
T Consensus 75 ~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l~ 154 (403)
T PRK08210 75 MSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTLG 154 (403)
T ss_pred HhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEeC
Confidence 7778889999999999999999888864322 11 1122356888999999999999653 222233
Q ss_pred --cchHHHHHHhhhcC
Q 026370 226 --TTDTAAALRCAEIS 239 (239)
Q Consensus 226 --TTDt~AAlrA~Ei~ 239 (239)
.+|+.|+++|..++
T Consensus 155 rg~sD~~A~~lA~~l~ 170 (403)
T PRK08210 155 RGGSDTTAAALGVALK 170 (403)
T ss_pred CCchHHHHHHHHHHcC
Confidence 36999999998764
No 37
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.29 E-value=1e-10 Score=103.53 Aligned_cols=140 Identities=19% Similarity=0.235 Sum_probs=96.0
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEE-----CCChhhhhh--hhhhh--cCCCccchhHHHH
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV-----GGGNIFRGA--SAAGN--SGLDRSSADYIGM 163 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~-----GGGniaRg~--~~Ar~--~Gi~r~~aD~IGM 163 (239)
+|||+||+++.. .+.+++++++|+++.+.|++++||| |||...... ..... ...+....|.+-.
T Consensus 2 ~ViK~GGs~l~~-------~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~ 74 (244)
T cd04260 2 IVQKFGGTSVST-------KERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMS 74 (244)
T ss_pred EEEEECchhcCC-------HHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 689999999863 3578999999999999998877666 555322111 11111 2344445667766
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEecccc-----Cc----ccccchHHHHHHHHhCCCEEEEeCC---CCCccc------
Q 026370 164 LATVMNAIFLQATMESIGIPTRVQTAFRM-----SE----VAEPYIRRRAVRHLEKGRVVIFAAG---TGNPFF------ 225 (239)
Q Consensus 164 lAT~LNAllL~~aL~~~gi~a~v~SAi~i-----~~----i~e~y~~~ea~~~L~~G~IvVfagG---tg~P~f------ 225 (239)
...++++.++...|.++|+++..+++... .. -....+.+.+.++++.|.|||+.|. ..+..+
T Consensus 75 ~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg 154 (244)
T cd04260 75 CGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRG 154 (244)
T ss_pred HhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCC
Confidence 66678888999999999999887754321 11 1122357889999999999999654 222222
Q ss_pred cchHHHHHHhhhcC
Q 026370 226 TTDTAAALRCAEIS 239 (239)
Q Consensus 226 TTDt~AAlrA~Ei~ 239 (239)
.+|++|+++|..++
T Consensus 155 ~sD~~A~~lA~~l~ 168 (244)
T cd04260 155 GSDTTAAALGAALN 168 (244)
T ss_pred chHHHHHHHHHHcC
Confidence 36999999998764
No 38
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.28 E-value=5.2e-11 Score=103.83 Aligned_cols=136 Identities=20% Similarity=0.195 Sum_probs=92.8
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCcc------chhHHH---
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS------SADYIG--- 162 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~------~aD~IG--- 162 (239)
++|||+||+++..+ ++++++.|+.+.+.|.+++||||||.+ ..++.+++|+... ..|...
T Consensus 1 ~~ViK~GGs~l~~~---------~~~~~~~i~~l~~~g~~~VlVhggg~~--~~~~~~~~~~~~~~~~g~r~t~~~~~~~ 69 (231)
T TIGR00761 1 TIVIKIGGAAISDL---------LEAFASDIAFLRAVGIKPVIVHGGGPE--INELLEALGIPPEFKNGLRVTDKETLEV 69 (231)
T ss_pred CEEEEEChHHHhcc---------HHHHHHHHHHHHHcCCCEEEEcCCcHH--HHHHHHHcCCCCEecCCCccCCHHHHHH
Confidence 47999999998642 789999999998989999999999987 3334444554221 122222
Q ss_pred --HHHH-HHHHHHHHHHHHhcCCCceEEecccc--------C-------cccccchHHHHHHHHhCCCEEEEeCCCC---
Q 026370 163 --MLAT-VMNAIFLQATMESIGIPTRVQTAFRM--------S-------EVAEPYIRRRAVRHLEKGRVVIFAAGTG--- 221 (239)
Q Consensus 163 --MlAT-~LNAllL~~aL~~~gi~a~v~SAi~i--------~-------~i~e~y~~~ea~~~L~~G~IvVfagGtg--- 221 (239)
+... ++|..+++ +|.+.|+++..++.... + .-....+.+.+.+.++.|.|||+.+=+.
T Consensus 70 ~~~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~ 148 (231)
T TIGR00761 70 VEMVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAE 148 (231)
T ss_pred HHHHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCC
Confidence 1223 68877776 78888998765533211 0 1112335788999999999999964111
Q ss_pred -Cc-cccchHHHHHHhhhcC
Q 026370 222 -NP-FFTTDTAAALRCAEIS 239 (239)
Q Consensus 222 -~P-~fTTDt~AAlrA~Ei~ 239 (239)
.. ...+|.+|+.+|..++
T Consensus 149 g~~~~l~sD~~A~~lA~~l~ 168 (231)
T TIGR00761 149 GQALNVNADTAAGALAAALG 168 (231)
T ss_pred CcEEEeCHHHHHHHHHHHcC
Confidence 12 5678999999998774
No 39
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.28 E-value=1.2e-10 Score=109.49 Aligned_cols=144 Identities=24% Similarity=0.281 Sum_probs=94.4
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCcc---chhHHHHHHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS---SADYIGMLAT 166 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~---~aD~IGMlAT 166 (239)
++|+|||+||++|.++ +..+|.+.++++|++|+++.+.|++++||||| .+..+.. .+++... ..+.-.+.+.
T Consensus 8 ~~~iVIKiGGs~l~~~-~~~l~~~~i~~la~~I~~l~~~g~~vViV~sG-ai~~g~~---~l~l~~~~~~~~~~qa~aav 82 (372)
T PRK05429 8 ARRIVVKVGSSLLTGG-GGGLDRARIAELARQIAALRAAGHEVVLVSSG-AVAAGRE---RLGLPERPKTLAEKQAAAAV 82 (372)
T ss_pred CCEEEEEeChhhccCC-CCCcCHHHHHHHHHHHHHHHHCCCeEEEEccc-HhhhhHh---hcCCCCCCCchHHHHHHHHH
Confidence 5799999999999865 33599999999999999999999999999976 4544432 2454322 2333333333
Q ss_pred --HHHHHHHHHHHHhcCCCceEEeccccCcccc--cc-h-HHHHHHHHhCCCEEEEeCC-C----CCccccchHHHHHHh
Q 026370 167 --VMNAIFLQATMESIGIPTRVQTAFRMSEVAE--PY-I-RRRAVRHLEKGRVVIFAAG-T----GNPFFTTDTAAALRC 235 (239)
Q Consensus 167 --~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e--~y-~-~~ea~~~L~~G~IvVfagG-t----g~P~fTTDt~AAlrA 235 (239)
.....++..+|.++|+++.-+. +.-+.+.+ .| + .+.+..+++.|.|||+..+ + -.-+..+|++|+++|
T Consensus 83 Gq~~L~~~~~~~l~~~gi~~~qil-~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA 161 (372)
T PRK05429 83 GQSRLMQAYEELFARYGITVAQIL-LTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVA 161 (372)
T ss_pred hHHHHHHHHHHHHHHCCCCEEEEE-eehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHH
Confidence 2333456788888898753220 11111211 12 2 2455667889999999521 1 112568999999999
Q ss_pred hhcC
Q 026370 236 AEIS 239 (239)
Q Consensus 236 ~Ei~ 239 (239)
.+++
T Consensus 162 ~~l~ 165 (372)
T PRK05429 162 NLVE 165 (372)
T ss_pred HHcC
Confidence 9875
No 40
>PRK12686 carbamate kinase; Reviewed
Probab=99.28 E-value=4.3e-11 Score=111.18 Aligned_cols=149 Identities=17% Similarity=0.298 Sum_probs=96.5
Q ss_pred cEEEEEeccccccCCCCCC-CCHHHHHHHHHHHHHHHhCCceEEEEECC----ChhhhhhhhhhhcCCCccchhHHHHHH
Q 026370 91 QRVLLKVSGEALAGDHTQN-IDPKITMAIAREVASVTRLGIEVAIVVGG----GNIFRGASAAGNSGLDRSSADYIGMLA 165 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~g-id~~~l~~iA~~I~~l~~~G~~I~IV~GG----GniaRg~~~Ar~~Gi~r~~aD~IGMlA 165 (239)
|||||||||++|..++... ...+.++..|+.|.++.+.||+++||||| |+++.....++....+..-.|..|-+.
T Consensus 3 ~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~s 82 (312)
T PRK12686 3 EKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAMS 82 (312)
T ss_pred CEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhhc
Confidence 6899999999998765443 55789999999999999999999999999 566665544443334555556444433
Q ss_pred HHHHHHHHHHHH----HhcCCCc---eEE---------eccccC--cc--------------------ccc---------
Q 026370 166 TVMNAIFLQATM----ESIGIPT---RVQ---------TAFRMS--EV--------------------AEP--------- 198 (239)
Q Consensus 166 T~LNAllL~~aL----~~~gi~a---~v~---------SAi~i~--~i--------------------~e~--------- 198 (239)
-=+++++|+.+| ...+++. .++ .||.-+ .+ .++
T Consensus 83 qg~iGy~~~q~l~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rrvV 162 (312)
T PRK12686 83 QGMIGYWLQNALNNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRRVV 162 (312)
T ss_pred cchhhHHHHHHHHHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEEee
Confidence 334444444433 3223221 111 111100 00 000
Q ss_pred --------chHHHHHHHHhCCCEEEEeCCCCCcc-------------ccchHHHHHHhhhcC
Q 026370 199 --------YIRRRAVRHLEKGRVVIFAAGTGNPF-------------FTTDTAAALRCAEIS 239 (239)
Q Consensus 199 --------y~~~ea~~~L~~G~IvVfagGtg~P~-------------fTTDt~AAlrA~Ei~ 239 (239)
.+.+-+..+++.|.|||.+||+|.|- -.-|++|+++|.+++
T Consensus 163 ~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~ 224 (312)
T PRK12686 163 PSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQID 224 (312)
T ss_pred CCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcC
Confidence 14556778899999999999989772 134999999998874
No 41
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.27 E-value=7.3e-11 Score=109.68 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=96.4
Q ss_pred cEEEEEeccccccCCCCCC-C--CHHHHHHHHHHHHHHHhCCceEEEEECCCh----hhhhhhhhhhc-CCCccchh---
Q 026370 91 QRVLLKVSGEALAGDHTQN-I--DPKITMAIAREVASVTRLGIEVAIVVGGGN----IFRGASAAGNS-GLDRSSAD--- 159 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~g-i--d~~~l~~iA~~I~~l~~~G~~I~IV~GGGn----iaRg~~~Ar~~-Gi~r~~aD--- 159 (239)
|++||||||++|..++..+ + +.+.++.+|+.|+.|...|++++||||||. ++.....+.++ |......|
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~v 82 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCV 82 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHHH
Confidence 6899999999997654443 3 347999999999999999999999999965 44444333222 33333344
Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCc--eEE-----e----ccc-----cCcc--------------------------
Q 026370 160 --YIGMLATVMNAIFLQATMESIGIPT--RVQ-----T----AFR-----MSEV-------------------------- 195 (239)
Q Consensus 160 --~IGMlAT~LNAllL~~aL~~~gi~a--~v~-----S----Ai~-----i~~i-------------------------- 195 (239)
-.|++.-.+|+.+.. .|.+.+.++ .++ + +|. ++.+
T Consensus 83 ~~~~g~i~~~i~~~L~~-~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~ 161 (316)
T PRK12352 83 ADTQGGIGYLIQQALNN-RLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY 161 (316)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCe
Confidence 344445566766644 455545332 122 1 121 0111
Q ss_pred ---------cccchHHHHHHHHhCCCEEEEeCCCCCccc-c-------------chHHHHHHhhhcC
Q 026370 196 ---------AEPYIRRRAVRHLEKGRVVIFAAGTGNPFF-T-------------TDTAAALRCAEIS 239 (239)
Q Consensus 196 ---------~e~y~~~ea~~~L~~G~IvVfagGtg~P~f-T-------------TDt~AAlrA~Ei~ 239 (239)
.+.-+.+-++..|+.|.|||.+||||.|.. + -|.+|+..|..++
T Consensus 162 rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~ 228 (316)
T PRK12352 162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIH 228 (316)
T ss_pred EEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhC
Confidence 111245667888999999999999999932 1 5888998888764
No 42
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.26 E-value=1.3e-10 Score=107.23 Aligned_cols=149 Identities=26% Similarity=0.346 Sum_probs=100.0
Q ss_pred cEEEEEeccccccCCCCC-CCC--HHHHHHHHHHHHHHHhCCceEEEEECC----ChhhhhhhhhhhcC-CCccchhHHH
Q 026370 91 QRVLLKVSGEALAGDHTQ-NID--PKITMAIAREVASVTRLGIEVAIVVGG----GNIFRGASAAGNSG-LDRSSADYIG 162 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~-gid--~~~l~~iA~~I~~l~~~G~~I~IV~GG----GniaRg~~~Ar~~G-i~r~~aD~IG 162 (239)
+||||+|||++|..+++. ..+ .+.++..|++|.++.++||+++|+||+ |+++...+++.++. .+..-.|..|
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~ 80 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLV 80 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHh
Confidence 589999999999876543 233 889999999999999999999999999 78888877654443 5555566544
Q ss_pred HHHHHHHHHHHH----HHHHhcCCC---ceEE---------eccccC-ccccc-c-------------------------
Q 026370 163 MLATVMNAIFLQ----ATMESIGIP---TRVQ---------TAFRMS-EVAEP-Y------------------------- 199 (239)
Q Consensus 163 MlAT~LNAllL~----~aL~~~gi~---a~v~---------SAi~i~-~i~e~-y------------------------- 199 (239)
-+.--+=+++|+ ..|...+++ ..++ +||.-+ +..-+ |
T Consensus 81 AmsQG~IGy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~R 160 (312)
T COG0549 81 AMSQGMIGYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYR 160 (312)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCee
Confidence 443333333333 334444532 1222 222211 11101 1
Q ss_pred ------------hHHHHHHHHhCCCEEEEeCCCCCccc-------------cchHHHHHHhhhcC
Q 026370 200 ------------IRRRAVRHLEKGRVVIFAAGTGNPFF-------------TTDTAAALRCAEIS 239 (239)
Q Consensus 200 ------------~~~ea~~~L~~G~IvVfagGtg~P~f-------------TTDt~AAlrA~Ei~ 239 (239)
..+.++..+++|.+||.+||||.|-. --|-+++++|.+|+
T Consensus 161 RVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~ 225 (312)
T COG0549 161 RVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQID 225 (312)
T ss_pred EecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhc
Confidence 34456778999999999999999933 23778999999874
No 43
>PLN02512 acetylglutamate kinase
Probab=99.26 E-value=5.8e-11 Score=109.13 Aligned_cols=139 Identities=18% Similarity=0.232 Sum_probs=94.8
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc------hhHHH-
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS------ADYIG- 162 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~------aD~IG- 162 (239)
.+++||||||++|..+ +..+.+++.|+.+.+.|.+++||||||..... +.+++|++... .|.--
T Consensus 47 ~~tiVIKlGGs~i~d~-------~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~--~~~~~gi~~~~~~G~rvT~~~~l 117 (309)
T PLN02512 47 GKTVVVKYGGAAMKDP-------ELKAGVIRDLVLLSCVGLRPVLVHGGGPEINS--WLKKVGIEPQFKNGLRVTDAETM 117 (309)
T ss_pred CCeEEEEECCeeccCh-------hHHHHHHHHHHHHHHCCCCEEEEECCcHHHHH--HHHHcCCCCcCCCCCcCCCHHHH
Confidence 4679999999998643 24566888888777888999999999998444 44456665332 12111
Q ss_pred ----H-HHHHHHHHHHHHHHHhcCCCceEEecccc-----------------CcccccchHHHHHHHHhCCCEEEEeCCC
Q 026370 163 ----M-LATVMNAIFLQATMESIGIPTRVQTAFRM-----------------SEVAEPYIRRRAVRHLEKGRVVIFAAGT 220 (239)
Q Consensus 163 ----M-lAT~LNAllL~~aL~~~gi~a~v~SAi~i-----------------~~i~e~y~~~ea~~~L~~G~IvVfagGt 220 (239)
| ++.++|..+.+ .|.+.|+++..++.... +++ ...+.+.+.++|+.|.|||+.+=+
T Consensus 118 ei~~~~l~g~ln~~lv~-~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i-~~v~~~~i~~lL~~g~IPVi~~~~ 195 (309)
T PLN02512 118 EVVEMVLVGKVNKSLVS-LINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEV-TRVDPTVLRPLVDDGHIPVIATVA 195 (309)
T ss_pred HHHHHHHhhHHHHHHHH-HHHHcCCCeEEeehhhCCEEEEEEcCcCcccccccee-eecCHHHHHHHHhCCCEEEEeCce
Confidence 1 13467877764 57777999877754321 111 223578899999999999996322
Q ss_pred CCc-----cccchHHHHHHhhhcC
Q 026370 221 GNP-----FFTTDTAAALRCAEIS 239 (239)
Q Consensus 221 g~P-----~fTTDt~AAlrA~Ei~ 239 (239)
-.+ ...+|.+|+++|.+++
T Consensus 196 ~d~~g~~~~i~~D~~A~~lA~~L~ 219 (309)
T PLN02512 196 ADEDGQAYNINADTAAGEIAAALG 219 (309)
T ss_pred ECCCCCEeccCHHHHHHHHHHHcC
Confidence 112 2489999999998875
No 44
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.23 E-value=8.9e-11 Score=103.98 Aligned_cols=136 Identities=19% Similarity=0.233 Sum_probs=93.7
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCcc-----------chhHH
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYI 161 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~-----------~aD~I 161 (239)
+||||||++|..+ +.++++++.|+.+.+.|.+++||||||.+ .+++++++|+... ..+.+
T Consensus 1 ~ViKlGGs~l~~~-------~~~~~~~~~i~~l~~~g~~~VlVhG~g~~--~~~~~~~~~~~~~~~~~~r~t~~~~l~~~ 71 (256)
T cd04238 1 VVIKYGGSAMKDE-------ELKEAFADDIVLLKQVGINPVIVHGGGPE--INELLKRLGIESEFVNGLRVTDKETMEIV 71 (256)
T ss_pred CEEEEChHHhcCc-------cHHHHHHHHHHHHHHCCCCEEEECCCcHH--HHHHHHHCCCCCEeECCeecCCHHHHHHH
Confidence 4899999998754 26688888898888888999999999998 5445556666421 11222
Q ss_pred HHHH-HHHHHHHHHHHHHhcCCCceEEeccccC-----------------cccccchHHHHHHHHhCCCEEEEeCCCC--
Q 026370 162 GMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS-----------------EVAEPYIRRRAVRHLEKGRVVIFAAGTG-- 221 (239)
Q Consensus 162 GMlA-T~LNAllL~~aL~~~gi~a~v~SAi~i~-----------------~i~e~y~~~ea~~~L~~G~IvVfagGtg-- 221 (239)
-+.. .++|..+ .++|.+.|+++..++..... .-+...+.+.+.+.|+.|.|||+. +-+
T Consensus 72 ~~a~~g~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~-~~~~~ 149 (256)
T cd04238 72 EMVLAGKVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIA-PIAVD 149 (256)
T ss_pred HHHHcCchHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEEC-CcEEC
Confidence 2222 4778776 77788889886666443210 112233578899999999999995 221
Q ss_pred Cc----cccchHHHHHHhhhcC
Q 026370 222 NP----FFTTDTAAALRCAEIS 239 (239)
Q Consensus 222 ~P----~fTTDt~AAlrA~Ei~ 239 (239)
.+ ...+|.+|+++|.+++
T Consensus 150 ~~g~~~~~~~D~~A~~lA~~l~ 171 (256)
T cd04238 150 EDGETYNVNADTAAGAIAAALK 171 (256)
T ss_pred CCCcEEEECHHHHHHHHHHHcC
Confidence 22 3449999999998874
No 45
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.22 E-value=2.8e-10 Score=103.28 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=96.2
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc-----------h
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS-----------A 158 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~-----------a 158 (239)
-+++|||+||+++..+ +..+.+++.|+.+...|.+++||||||.. ..++++++|+.... .
T Consensus 23 ~~~~VIk~gG~~~~~~-------~l~~~~~~di~~l~~~g~~~VlVHGgg~~--i~~~~~~~g~~~~~~~G~rvT~~~~l 93 (284)
T CHL00202 23 GRIMVIKYGGAAMKNL-------ILKADIIKDILFLSCIGLKIVVVHGGGPE--INFWLKQLNISPKFWNGIRVTDKVTM 93 (284)
T ss_pred CCeEEEEEChHHhcCc-------chHHHHHHHHHHHHHCCCcEEEEeCCcHH--HHHHHHHCCCCCEeECCcccCCHHHH
Confidence 4689999999997543 24568999999999999999999999999 44445566654422 2
Q ss_pred hHHHH-HHHHHHHHHHHHHHHhcCCCceEEecccc----------------CcccccchHHHHHHHHhCCCEEEEeC---
Q 026370 159 DYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRM----------------SEVAEPYIRRRAVRHLEKGRVVIFAA--- 218 (239)
Q Consensus 159 D~IGM-lAT~LNAllL~~aL~~~gi~a~v~SAi~i----------------~~i~e~y~~~ea~~~L~~G~IvVfag--- 218 (239)
+.+=| ++..+|..+.+. |.+.|+++.-++.... +++ ...+.+.+.+.|+.|.|||+.+
T Consensus 94 ~~~~~~l~g~ln~~lv~~-L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i-~~v~~~~i~~ll~~g~iPVi~~~~~ 171 (284)
T CHL00202 94 EIVEMVLAGKVNKDLVGS-INANGGKAVGLCGKDANLIVARASDKKDLGLVGEI-QQVDPQLIDMLLEKNYIPVIASVAA 171 (284)
T ss_pred HHHHHHHhhHHHHHHHHH-HHhCCCCeeeeeeccCCEEEEEeCCCcccccceeE-EecCHHHHHHHHHCCCEEEECCCcc
Confidence 22222 445778887665 5666887666644321 111 1235688899999999999963
Q ss_pred -CCCCcc-ccchHHHHHHhhhcC
Q 026370 219 -GTGNPF-FTTDTAAALRCAEIS 239 (239)
Q Consensus 219 -Gtg~P~-fTTDt~AAlrA~Ei~ 239 (239)
..|+.+ ...|.+|+.+|..++
T Consensus 172 ~~~g~~~ni~~D~~A~~lA~~l~ 194 (284)
T CHL00202 172 DHDGQTYNINADVVAGEIAAKLN 194 (284)
T ss_pred CCCCcEEecCHHHHHHHHHHHhC
Confidence 123333 589999999998764
No 46
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.20 E-value=3.7e-10 Score=101.63 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=94.4
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc------hhH---
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS------ADY--- 160 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~------aD~--- 160 (239)
.+++||||||+++..++ ..+.+++.|+.+.+.|.+++||||||.... +..+++|+.... .|.
T Consensus 14 ~~~~ViKlGGs~i~~~~-------~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~--~~l~~~g~~~~~~~g~r~t~~~~~ 84 (279)
T cd04250 14 GKTVVIKYGGNAMKDEE-------LKESFARDIVLLKYVGINPVVVHGGGPEIN--EMLKKLGIESEFVNGLRVTDEETM 84 (279)
T ss_pred CCEEEEEEChHHhcCcc-------HHHHHHHHHHHHHHCCCCEEEEcCCcHHHH--HHHHHCCCCCEeECCeecCCHHHH
Confidence 46899999999986432 556788888877788889999999999744 344456655321 111
Q ss_pred -HHHHH--HHHHHHHHHHHHHhcCCCceEEecccc-----C----------------cccccchHHHHHHHHhCCCEEEE
Q 026370 161 -IGMLA--TVMNAIFLQATMESIGIPTRVQTAFRM-----S----------------EVAEPYIRRRAVRHLEKGRVVIF 216 (239)
Q Consensus 161 -IGMlA--T~LNAllL~~aL~~~gi~a~v~SAi~i-----~----------------~i~e~y~~~ea~~~L~~G~IvVf 216 (239)
+=..+ .++|..+ .+.|.+.|+++..++.... + .-....+.+.+.++|+.|.|||+
T Consensus 85 ~~~~~~~~g~ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi 163 (279)
T cd04250 85 EIVEMVLVGKVNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVI 163 (279)
T ss_pred HHHHHHHcCchHHHH-HHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEE
Confidence 11112 3788886 6778888998777754321 0 01122357888999999999999
Q ss_pred eCCCCC--cc----ccchHHHHHHhhhcC
Q 026370 217 AAGTGN--PF----FTTDTAAALRCAEIS 239 (239)
Q Consensus 217 agGtg~--P~----fTTDt~AAlrA~Ei~ 239 (239)
.+ -+. .+ ..+|.+|++.|.+++
T Consensus 164 ~~-~~~~~~g~~~~~~~D~~A~~lA~~l~ 191 (279)
T cd04250 164 AP-VGVGEDGETYNINADTAAGAIAAALK 191 (279)
T ss_pred cC-CccCCCCcEEEeCHHHHHHHHHHHhC
Confidence 63 331 21 359999999998875
No 47
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.19 E-value=3.2e-10 Score=102.08 Aligned_cols=140 Identities=19% Similarity=0.258 Sum_probs=94.6
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccch------h--HH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA------D--YI 161 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~a------D--~I 161 (239)
.+++|||+||++|..++ .+..+++.|+.+.+.|.+++||||||..... ..+++|...... | .+
T Consensus 23 ~~~iViK~GGs~l~~~~-------~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~--~~~~~g~~~~~~~g~~~t~~~~l 93 (283)
T PRK00942 23 GKTIVIKYGGNAMTDEE-------LKEAFARDIVLLKQVGINPVVVHGGGPQIDE--LLKKLGIESEFVNGLRVTDAETM 93 (283)
T ss_pred CCeEEEEEChHHhcCcc-------hHHHHHHHHHHHHHCCCCEEEEeCChHHHHH--HHHHCCCCcEeeCCEecCCHHHH
Confidence 35899999999997543 5678889999888899999999999998544 333455443211 1 11
Q ss_pred H--HHH--HHHHHHHHHHHHHhcCCCceEEecccc-----C-----------cccccchHHHHHHHHhCCCEEEEeCC--
Q 026370 162 G--MLA--TVMNAIFLQATMESIGIPTRVQTAFRM-----S-----------EVAEPYIRRRAVRHLEKGRVVIFAAG-- 219 (239)
Q Consensus 162 G--MlA--T~LNAllL~~aL~~~gi~a~v~SAi~i-----~-----------~i~e~y~~~ea~~~L~~G~IvVfagG-- 219 (239)
- .++ -++|..+. ++|..+|+++.-++.... + ......+.+.+.++|+.|.|||+.+=
T Consensus 94 ~~~~~a~~G~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~ 172 (283)
T PRK00942 94 EVVEMVLAGKVNKELV-SLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGV 172 (283)
T ss_pred HHHHHHHcCchHHHHH-HHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEE
Confidence 1 111 26787666 778888988765543221 0 11123357889999999999999621
Q ss_pred --CCCc-cccchHHHHHHhhhcC
Q 026370 220 --TGNP-FFTTDTAAALRCAEIS 239 (239)
Q Consensus 220 --tg~P-~fTTDt~AAlrA~Ei~ 239 (239)
.|+. ...+|++|+++|..++
T Consensus 173 ~~~g~~~~l~~D~~A~~lA~~l~ 195 (283)
T PRK00942 173 GEDGETYNINADTAAGAIAAALG 195 (283)
T ss_pred CCCCcEEEECHHHHHHHHHHHcC
Confidence 1112 4678999999998875
No 48
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.19 E-value=2.1e-10 Score=101.53 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=91.9
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhhhhhhhhhhcCCCcc--------chhHHHH
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRGASAAGNSGLDRS--------SADYIGM 163 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~--------~aD~IGM 163 (239)
.|||+||+++.++ +.++++++.|+.+.+ .|.+++||||||.+. .++.+++|+... ..+.+.+
T Consensus 1 ~ViK~GGs~l~~~-------~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~--~~~~~~~g~~~~~~~g~rvt~~~~l~~ 71 (252)
T cd04249 1 LVIKLGGALLETE-------AALEQLFSALSEYQQQHNRQLVIVHGGGCVV--DELLKKLNFPSEKKNGLRVTPKEQIPY 71 (252)
T ss_pred CEEEEChHHhcCh-------hhHHHHHHHHHHHHHhCCCCEEEECCCCHHH--HHHHHHcCCCCEEECCEecCCHHHHHH
Confidence 4899999998533 478899999998754 567999999999983 333334444221 1222333
Q ss_pred --HH--HHHHHHHHHHHHHhcCCCceEEecccc---------------CcccccchHHHHHHHHhCCCEEEEeCCCCCc-
Q 026370 164 --LA--TVMNAIFLQATMESIGIPTRVQTAFRM---------------SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNP- 223 (239)
Q Consensus 164 --lA--T~LNAllL~~aL~~~gi~a~v~SAi~i---------------~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P- 223 (239)
.+ -++|..+++..+ +.|+++.-++.... +++ ...+.+.++++++.|.|||+.+-+..+
T Consensus 72 ~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v-~~i~~~~l~~ll~~g~ipVi~~~g~~~~ 149 (252)
T cd04249 72 ITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPELGAVGKA-TANDPSLLNDLLKAGFLPIISSIGADDQ 149 (252)
T ss_pred HHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCCCCcccce-EEEcHHHHHHHHHCCCEEEECCCEECCC
Confidence 22 277888888887 66998766643321 122 223578889999999999996332222
Q ss_pred ----cccchHHHHHHhhhcC
Q 026370 224 ----FFTTDTAAALRCAEIS 239 (239)
Q Consensus 224 ----~fTTDt~AAlrA~Ei~ 239 (239)
..++|++|++.|..++
T Consensus 150 g~~~~~~~D~~A~~lA~~l~ 169 (252)
T cd04249 150 GQLMNVNADQAATAIAQLLN 169 (252)
T ss_pred CCEeeecHHHHHHHHHHHcC
Confidence 4567999999998764
No 49
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.18 E-value=3.7e-10 Score=102.41 Aligned_cols=138 Identities=20% Similarity=0.295 Sum_probs=92.3
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCC-----------ccch
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD-----------RSSA 158 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~-----------r~~a 158 (239)
.|++||||||++|..+ .++.++++|+.+.+.|++++||||||.....+.. +.|++ ....
T Consensus 18 ~~~~VIKlGG~ai~~~--------~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~--~~gi~~~~~~G~RvT~~~~l 87 (280)
T cd04237 18 GKTFVIAFGGEAVAHP--------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLA--ERGLEPRYHRGLRITDAAAL 87 (280)
T ss_pred CCEEEEEEChHHhcCc--------hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHH--HcCCCccccCCcCcCCHHHH
Confidence 4689999999999743 5689999999999999999999999998776532 23332 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCceEE-------------ecccc----------CcccccchHHHHHHHHhCCCEEE
Q 026370 159 DYIGMLATVMNAIFLQATMESIGIPTRVQ-------------TAFRM----------SEVAEPYIRRRAVRHLEKGRVVI 215 (239)
Q Consensus 159 D~IGMlAT~LNAllL~~aL~~~gi~a~v~-------------SAi~i----------~~i~e~y~~~ea~~~L~~G~IvV 215 (239)
|.+-|-...+|-. |...|.. ++++.-+ .+-.. ..-.+..+.+.+.+.|+.|.|||
T Consensus 88 ~~~~~~~g~v~~~-l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv 165 (280)
T cd04237 88 ECVKEAAGAVRLE-IEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVL 165 (280)
T ss_pred HHHHHHHHHHHHH-HHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEE
Confidence 3333333456666 4555655 6554211 11110 01112236788999999999999
Q ss_pred EeCCCCCc----c-ccchHHHHHHhhhcC
Q 026370 216 FAAGTGNP----F-FTTDTAAALRCAEIS 239 (239)
Q Consensus 216 fagGtg~P----~-fTTDt~AAlrA~Ei~ 239 (239)
.+..+..| + ...|.+|+.+|.+++
T Consensus 166 ~~~~g~~~~g~~lnvnaD~~A~~LA~~L~ 194 (280)
T cd04237 166 LSPLGYSPTGEVFNLSMEDVATAVAIALK 194 (280)
T ss_pred ECCceECCCCCEEeeCHHHHHHHHHHHcC
Confidence 98655544 3 488999999998874
No 50
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.16 E-value=2.6e-10 Score=101.90 Aligned_cols=131 Identities=21% Similarity=0.298 Sum_probs=90.8
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccch-----------h--
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA-----------D-- 159 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~a-----------D-- 159 (239)
+||||||+++. + ++++++.|+.+ |.+++||||||.+ .+++++++|++.... |
T Consensus 1 ~VIKlGGs~l~-~---------~~~~~~~i~~l---g~~~VlVHGgg~~--i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~ 65 (257)
T cd04251 1 IVVKIGGSVVS-D---------LDKVIDDIANF---GERLIVVHGGGNY--VNEYLKRLGVEPKFVTSPSGIRSRYTDKE 65 (257)
T ss_pred CEEEEChHHhh-C---------hHHHHHHHHHc---CCCEEEECCCHHH--HHHHHHHcCCCcEEEeCCCCCccccCCHH
Confidence 58999999986 2 25788888876 7899999999998 444556677655432 2
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCCceEEeccccC--------------------------cccccchHHHHHHHHhC
Q 026370 160 ---YIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS--------------------------EVAEPYIRRRAVRHLEK 210 (239)
Q Consensus 160 ---~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~--------------------------~i~e~y~~~ea~~~L~~ 210 (239)
.+=+...++|..+++ .|.+.|+++..++....+ .-....+.+.++++|++
T Consensus 66 ~l~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~ 144 (257)
T cd04251 66 TLEVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDA 144 (257)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhC
Confidence 222222588888666 788889987776443210 01123357889999999
Q ss_pred CCEEEEeCC----CCCc-cccchHHHHHHhhhcC
Q 026370 211 GRVVIFAAG----TGNP-FFTTDTAAALRCAEIS 239 (239)
Q Consensus 211 G~IvVfagG----tg~P-~fTTDt~AAlrA~Ei~ 239 (239)
|.|||++.= .|+. ...+|.+|+.+|..++
T Consensus 145 g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~ 178 (257)
T cd04251 145 GYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALK 178 (257)
T ss_pred CCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcC
Confidence 999999521 1223 3579999999998874
No 51
>PRK08841 aspartate kinase; Validated
Probab=99.16 E-value=9.2e-10 Score=104.48 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=96.5
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCCh----hhhhhhhhhhcC-C-CccchhHHHHHH
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN----IFRGASAAGNSG-L-DRSSADYIGMLA 165 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGn----iaRg~~~Ar~~G-i-~r~~aD~IGMlA 165 (239)
++|+|+||+++. +.+.++++++.|+++.+.|++++|||+|+. .+++ ++++.. . ++...|.+--..
T Consensus 3 ~~V~KfGGtsv~-------~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~--~~~~~~~~~~~~~~d~l~s~G 73 (392)
T PRK08841 3 LIVQKFGGTSVG-------SIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLG--LAKQVDSVPTARELDVLLSAG 73 (392)
T ss_pred eEEEeECcccCC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHH--hhhhhccCCCHHHHHHHHHHH
Confidence 789999999986 346999999999999999999999998743 3333 232222 1 122233332222
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccccCccc---------ccchHHHHHHHHhCCCEEEEeCCCC---Ccccc------c
Q 026370 166 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA---------EPYIRRRAVRHLEKGRVVIFAAGTG---NPFFT------T 227 (239)
Q Consensus 166 T~LNAllL~~aL~~~gi~a~v~SAi~i~~i~---------e~y~~~ea~~~L~~G~IvVfagGtg---~P~fT------T 227 (239)
=++++.++..+|+..|+++..+++....-+. +..+.+.+.++++.|.|||++|..| +...| +
T Consensus 74 E~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggs 153 (392)
T PRK08841 74 EQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGS 153 (392)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCCh
Confidence 3688889999999999999888765431111 1123567888899999999966422 33443 6
Q ss_pred hHHHHHHhhhcC
Q 026370 228 DTAAALRCAEIS 239 (239)
Q Consensus 228 Dt~AAlrA~Ei~ 239 (239)
|+.|+++|..++
T Consensus 154 D~tAa~lA~~L~ 165 (392)
T PRK08841 154 DTTAVALAGALN 165 (392)
T ss_pred HHHHHHHHHHcC
Confidence 999999998774
No 52
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.16 E-value=6.9e-10 Score=98.75 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=93.7
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccch------hHHHHHH-
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA------DYIGMLA- 165 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~a------D~IGMlA- 165 (239)
.|||+||+++.+ .++++++.|+.+.+.|.+++||||||.+ ..+.++++|+....- |..+|..
T Consensus 1 ~ViKiGG~~~~~---------~l~~~~~di~~l~~~g~~~VlVHGgg~~--i~~~~~~~gi~~~~~~g~RvT~~~~l~~v 69 (248)
T cd04252 1 AVIKVGGAIIED---------DLDELAASLSFLQHVGLYPIVVHGAGPQ--LNEELEAAGVEPEYVDGLRVTDPETLAVA 69 (248)
T ss_pred CEEEEChhhhhc---------cHHHHHHHHHHHHHCCCcEEEEeCCCHH--HHHHHHHcCCCcEeeCCcccCCHHHHHHH
Confidence 389999998753 2588999999988889999999999999 555666788775432 2222222
Q ss_pred ----HHHHHHHHHHHHHhcCCCceEEecccc-------------CcccccchHHHHHHHHhCCCEEEEeC----CCCCc-
Q 026370 166 ----TVMNAIFLQATMESIGIPTRVQTAFRM-------------SEVAEPYIRRRAVRHLEKGRVVIFAA----GTGNP- 223 (239)
Q Consensus 166 ----T~LNAllL~~aL~~~gi~a~v~SAi~i-------------~~i~e~y~~~ea~~~L~~G~IvVfag----Gtg~P- 223 (239)
..+|..+++. |.+.|+++..++.-.+ ++ ....+.+.++++|+.|.|||+++ ..|..
T Consensus 70 ~~al~~vn~~iv~~-l~~~g~~a~~l~~~~~~a~~~~~~d~g~~G~-v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~ 147 (248)
T cd04252 70 RKVFLEENLKLVEA-LERNGARARPITSGVFEAEYLDKDKYGLVGK-ITGVNKAPIEAAIRAGYLPILTSLAETPSGQLL 147 (248)
T ss_pred HHHHHHHHHHHHHH-HHhCCCCcccccCceEEEEECcCccCCccCc-eeeECHHHHHHHHHCCCeEEECCceECCCCCEE
Confidence 3667766666 6667887655432111 11 22346788999999999999973 23333
Q ss_pred cccchHHHHHHhhhcC
Q 026370 224 FFTTDTAAALRCAEIS 239 (239)
Q Consensus 224 ~fTTDt~AAlrA~Ei~ 239 (239)
-.++|.+|+.+|..++
T Consensus 148 nvnaD~~A~~lA~aL~ 163 (248)
T cd04252 148 NVNADVAAGELARVLE 163 (248)
T ss_pred EECHHHHHHHHHHHcC
Confidence 3589999999998764
No 53
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.97 E-value=8.1e-09 Score=98.22 Aligned_cols=137 Identities=19% Similarity=0.278 Sum_probs=90.1
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc-----------h
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS-----------A 158 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~-----------a 158 (239)
.+++|||+||++|..+ .++.+++.|+.+.+.|++++||||||......-. +.|+.... .
T Consensus 25 ~~~~VIk~GG~~l~~~--------~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~--~~g~~~~~~~G~RvT~~~~l 94 (441)
T PRK05279 25 GKTFVIMLGGEAIAHG--------NFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLA--ARGIEPRYHKGLRVTDAAAL 94 (441)
T ss_pred CCEEEEEECchhccCh--------hHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH--HcCCCceecCCcccCCHHHH
Confidence 4689999999999643 3578999999999999999999999988766522 34444222 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCceEE--------e-----cccc-----------CcccccchHHHHHHHHhCCCEE
Q 026370 159 DYIGMLATVMNAIFLQATMESIGIPTRVQ--------T-----AFRM-----------SEVAEPYIRRRAVRHLEKGRVV 214 (239)
Q Consensus 159 D~IGMlAT~LNAllL~~aL~~~gi~a~v~--------S-----Ai~i-----------~~i~e~y~~~ea~~~L~~G~Iv 214 (239)
+..-|-.-.+|-. |...|+. ++++.-+ + +-+. +. ....+.+.+...|+.|.||
T Consensus 95 ~~~~~~~g~v~~~-l~~~l~~-g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~-v~~v~~~~i~~ll~~g~ip 171 (441)
T PRK05279 95 ECVKQAAGELRLD-IEARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGE-VRRIDAEAIRRQLDSGAIV 171 (441)
T ss_pred HHHHHHHHHHHHH-HHHHHhc-cCCCCcccCCcceEeeccEEEEEECCCCCCccccceee-EEEEeHHHHHHHHHCCCeE
Confidence 2333333345655 4555655 6654221 1 1001 11 1223577888999999999
Q ss_pred EEeCCCCCc-----cccchHHHHHHhhhcC
Q 026370 215 IFAAGTGNP-----FFTTDTAAALRCAEIS 239 (239)
Q Consensus 215 VfagGtg~P-----~fTTDt~AAlrA~Ei~ 239 (239)
|++..+..| -...|.+|+.+|.+++
T Consensus 172 V~~~i~~~~~g~~~ni~~D~~a~~lA~~l~ 201 (441)
T PRK05279 172 LLSPLGYSPTGESFNLTMEEVATQVAIALK 201 (441)
T ss_pred EECCceECCCCCEEEECHHHHHHHHHHHcC
Confidence 997444333 2389999999998874
No 54
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=98.92 E-value=2e-08 Score=101.74 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=90.5
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEE-EECCChhhhhhhhhhhcCC----------Cccch
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAI-VVGGGNIFRGASAAGNSGL----------DRSSA 158 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~I-V~GGGniaRg~~~Ar~~Gi----------~r~~a 158 (239)
.||||||+||+.|.+++ ..+|.+.+.+++++|+++.+.|++|+| ++|++.+.+.+ .+.++. +....
T Consensus 7 ~~~iViKiGss~lt~~~-~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~--~~~~~~~~~~~~~~~~~~~~~ 83 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGD-GRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQR--LRHRILVNSSFADLQKPQPEL 83 (715)
T ss_pred CCEEEEEeCcceeECCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHH--hccchhccccccccCCCCchH
Confidence 58999999999998653 359999999999999999999999998 66666664432 221211 22233
Q ss_pred hHHHHHHHHHHHH--HHHHHHHhcCCCc-eEE-eccccCccc--ccc--hHHHHHHHHhCCCEEEEeCCCCCc-------
Q 026370 159 DYIGMLATVMNAI--FLQATMESIGIPT-RVQ-TAFRMSEVA--EPY--IRRRAVRHLEKGRVVIFAAGTGNP------- 223 (239)
Q Consensus 159 D~IGMlAT~LNAl--lL~~aL~~~gi~a-~v~-SAi~i~~i~--e~y--~~~ea~~~L~~G~IvVfagGtg~P------- 223 (239)
+..-.-+--+..+ +-+..|..+++.+ .++ +. +.+- +.| ..+.+..+|+.|.|||+.++...+
T Consensus 84 ~~qa~aa~gq~~L~~~y~~~f~~~~i~~aQ~Llt~---~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~ 160 (715)
T TIGR01092 84 DGKACAAVGQSGLMALYETMFTQLDITAAQILVTD---LDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYS 160 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeEEEEech---hhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCcccccccccc
Confidence 3222222222211 2244566667653 221 11 1111 111 356778889999999996522111
Q ss_pred -----cccchHHHHHHhhhcC
Q 026370 224 -----FFTTDTAAALRCAEIS 239 (239)
Q Consensus 224 -----~fTTDt~AAlrA~Ei~ 239 (239)
+...|++|+++|.+++
T Consensus 161 ~~~g~~~d~D~lAa~lA~~l~ 181 (715)
T TIGR01092 161 DSQGIFWDNDSLAALLALELK 181 (715)
T ss_pred cccceecchHHHHHHHHHHcC
Confidence 5678999999999875
No 55
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=98.90 E-value=2.9e-08 Score=90.65 Aligned_cols=134 Identities=9% Similarity=0.062 Sum_probs=93.5
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 169 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LN 169 (239)
.+-+|||+||+++.. .+.+..++..|+-|...|.+++||||||...... .. +....+.-+.+. ..|
T Consensus 35 ~~f~VIK~GG~~~~~-------~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~--l~----~~~~~~~~~v~~-~~n 100 (271)
T cd04236 35 PAFAVLEVDHSVFRS-------LEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTN--MS----DLELQAARSRLV-KDC 100 (271)
T ss_pred CCEEEEEEChhhhcC-------chhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhh--hc----CCcchheehhHH-HHH
Confidence 468999999999853 3478999999999999999999999999953221 11 222333333334 677
Q ss_pred HHHHHHHHHhcCCCceEEeccc-------------cCcccccchHHHHHHHHhCCCEEEEeC----CCCCc-cccchHHH
Q 026370 170 AIFLQATMESIGIPTRVQTAFR-------------MSEVAEPYIRRRAVRHLEKGRVVIFAA----GTGNP-FFTTDTAA 231 (239)
Q Consensus 170 AllL~~aL~~~gi~a~v~SAi~-------------i~~i~e~y~~~ea~~~L~~G~IvVfag----Gtg~P-~fTTDt~A 231 (239)
..+... |+..|+++.-++... .+++ ...+.+.++.+|+.|.|||++. .+|+. -...|.+|
T Consensus 101 ~~Lv~~-L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V-~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A 178 (271)
T cd04236 101 KTLVEA-LQANSAAAHPLFSGESVLQAEEPEPGASKGPS-VSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVT 178 (271)
T ss_pred HHHHHH-HHhCCCCeeeecCccceEEEEEcccCCccceE-EEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHH
Confidence 776655 677798877764331 1122 2236788999999999999973 33333 35689999
Q ss_pred HHHhhhcC
Q 026370 232 ALRCAEIS 239 (239)
Q Consensus 232 AlrA~Ei~ 239 (239)
+-+|..++
T Consensus 179 ~~lA~aL~ 186 (271)
T cd04236 179 TAIAKALQ 186 (271)
T ss_pred HHHHHHcC
Confidence 99998764
No 56
>PRK04531 acetylglutamate kinase; Provisional
Probab=98.83 E-value=3.5e-08 Score=94.24 Aligned_cols=121 Identities=18% Similarity=0.311 Sum_probs=79.0
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 169 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LN 169 (239)
|+.+|||+||++|..+ +..++..|+.+.+.|.+++||||||...+.. .++.|+.....+ |+..|--.
T Consensus 36 ~~~~VIKiGG~~l~~~---------~~~l~~dla~L~~~G~~~VlVHGggpqI~~~--l~~~gie~~~v~--G~RVTd~~ 102 (398)
T PRK04531 36 ERFAVIKVGGAVLRDD---------LEALASSLSFLQEVGLTPIVVHGAGPQLDAE--LDAAGIEKETVN--GLRVTSPE 102 (398)
T ss_pred CcEEEEEEChHHhhcC---------HHHHHHHHHHHHHCCCcEEEEECCCHHHHHH--HHHcCCCcEEEC--CEecCCHH
Confidence 7899999999998632 4889999999999999999999999998764 234566544332 22222111
Q ss_pred HH-HHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCc-cc----cchHHHHHHhhhcC
Q 026370 170 AI-FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNP-FF----TTDTAAALRCAEIS 239 (239)
Q Consensus 170 Al-lL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P-~f----TTDt~AAlrA~Ei~ 239 (239)
.+ ++..++...+. .+ ...++++|+.|.|||++.-+-.| ++ ++|.+|+.+|..++
T Consensus 103 tl~vv~~~l~~vn~--~l--------------v~~I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~ 162 (398)
T PRK04531 103 ALAIVRKVFQRSNL--DL--------------VEAVESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQ 162 (398)
T ss_pred HHHHHHHHHHHHHH--HH--------------HHHHHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcC
Confidence 11 11111111110 01 12277899999999996433334 33 89999999998764
No 57
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.82 E-value=3.1e-08 Score=94.20 Aligned_cols=137 Identities=15% Similarity=0.204 Sum_probs=87.8
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc-----------h
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS-----------A 158 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~-----------a 158 (239)
-+++|||+||+++..+ .+..+++.|+.+...|.+++||||||.....+- +++|++... .
T Consensus 17 ~~~~ViK~GG~~~~~~--------~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~--~~~g~~~~~~~G~RvT~~~~l 86 (429)
T TIGR01890 17 GKTFVVGLGGELVEGG--------NLGNIVADIALLHSLGVRLVLVHGARPQIERIL--AARGRTPHYHRGLRVTDEASL 86 (429)
T ss_pred CCEEEEEEChhhccCc--------cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHH--HHcCCCceeeCCcccCCHHHH
Confidence 4689999999998643 235899999999888999999999997766642 245555322 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCc-------------eEEecccc-----------CcccccchHHHHHHHHhCCCEE
Q 026370 159 DYIGMLATVMNAIFLQATMESIGIPT-------------RVQTAFRM-----------SEVAEPYIRRRAVRHLEKGRVV 214 (239)
Q Consensus 159 D~IGMlAT~LNAllL~~aL~~~gi~a-------------~v~SAi~i-----------~~i~e~y~~~ea~~~L~~G~Iv 214 (239)
+-+=|.+-..|-.+.+. |... ++. .++.|-.. +++ ...+.+.+...|+.|.||
T Consensus 87 ~~~~~~~g~vn~~l~~~-l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v-~~v~~~~l~~ll~~g~ip 163 (429)
T TIGR01890 87 EQAQQAAGTLRLAIEAR-LSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVI-RKIDTEGIRRQLDAGSIV 163 (429)
T ss_pred HHHHHHhChHHHHHHHH-HHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceE-EEEcHHHHHHHHHCCCeE
Confidence 22223233556444443 4432 221 11111111 111 123678899999999999
Q ss_pred EEe----CCCCCc-cccchHHHHHHhhhcC
Q 026370 215 IFA----AGTGNP-FFTTDTAAALRCAEIS 239 (239)
Q Consensus 215 Vfa----gGtg~P-~fTTDt~AAlrA~Ei~ 239 (239)
|++ +..|++ -...|.+|+-+|..++
T Consensus 164 vi~pi~~~~~g~~~nvnaD~~A~~lA~al~ 193 (429)
T TIGR01890 164 LLSPLGHSPTGETFNLDMEDVATSVAISLK 193 (429)
T ss_pred EECCcccCCCCCEEEeCHHHHHHHHHHHcC
Confidence 987 444555 5789999999998764
No 58
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=98.78 E-value=2.1e-07 Score=85.57 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcc-cccc--------hHHHHHHHHhCCCEEEEeCCCCCc-----
Q 026370 158 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-AEPY--------IRRRAVRHLEKGRVVIFAAGTGNP----- 223 (239)
Q Consensus 158 aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i-~e~y--------~~~ea~~~L~~G~IvVfagGtg~P----- 223 (239)
.|++==...++|+.+|..+|+..|+++..+++..++-+ .+.| +.+++.++++.++|||+.|..|.+
T Consensus 112 ~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ 191 (288)
T cd04245 112 LDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDI 191 (288)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCE
Confidence 35555566699999999999999999999987665322 2222 578899999999999998887876
Q ss_pred -cc---cchHHHHHHhhhcC
Q 026370 224 -FF---TTDTAAALRCAEIS 239 (239)
Q Consensus 224 -~f---TTDt~AAlrA~Ei~ 239 (239)
.+ +||+.|+++|.+++
T Consensus 192 ttLgRggSD~tAal~A~~l~ 211 (288)
T cd04245 192 KTFSRGGSDITGAILARGFQ 211 (288)
T ss_pred EEcCCCchHHHHHHHHHHcC
Confidence 55 99999999999875
No 59
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=98.72 E-value=2.7e-07 Score=88.01 Aligned_cols=141 Identities=22% Similarity=0.233 Sum_probs=94.3
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCC-hhhhhh-hhhhhc--CCC-------------
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-NIFRGA-SAAGNS--GLD------------- 154 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGG-niaRg~-~~Ar~~--Gi~------------- 154 (239)
++|+|+||+.+.. .+.++++++.|+...+.|++++|||++. .+-..- ++++.. +-.
T Consensus 2 ~~V~KFGGssv~~-------~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (441)
T TIGR00657 2 LIVQKFGGTSVGN-------AERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIE 74 (441)
T ss_pred CEEEEeCcccCCC-------HHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 5789999999863 4689999999998878889999999973 332221 122111 100
Q ss_pred ---------------------------ccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc-----Cc-----ccc
Q 026370 155 ---------------------------RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM-----SE-----VAE 197 (239)
Q Consensus 155 ---------------------------r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i-----~~-----i~e 197 (239)
....|++-=..=++++.++..+|+..|+++..++.... +. ...
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~ 154 (441)
T TIGR00657 75 ILERLIPQAIAEELKRLLDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVII 154 (441)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecH
Confidence 01123221112288999999999999999877755442 11 134
Q ss_pred cchHHHHHHHHhCCCEEEEeCC---CCCcccc------chHHHHHHhhhcC
Q 026370 198 PYIRRRAVRHLEKGRVVIFAAG---TGNPFFT------TDTAAALRCAEIS 239 (239)
Q Consensus 198 ~y~~~ea~~~L~~G~IvVfagG---tg~P~fT------TDt~AAlrA~Ei~ 239 (239)
.++.+.+.++++.|.|||+.|. ..+...+ +|+.|+++|..++
T Consensus 155 ~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~ 205 (441)
T TIGR00657 155 EILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALK 205 (441)
T ss_pred hhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcC
Confidence 4567888899999999999663 2222332 6999999998774
No 60
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=98.71 E-value=1.6e-07 Score=87.75 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=94.3
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-------------C-------hhhhhh-hhhhh
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-------------G-------NIFRGA-SAAGN 150 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-------------G-------niaRg~-~~Ar~ 150 (239)
++|+|+||+.+.. .++++++.|++..+ +.+++||+++ + ++.+.| +.+++
T Consensus 1 m~V~KFGGsSv~~---------~~~~v~~ii~~~~~-~~~~vVVVSA~~gvTd~L~~~~~~~~~~~l~~i~~~h~~~~~~ 70 (327)
T TIGR02078 1 MIVVKFGGSSVRY---------AFEEALELVKSLSE-EKRVIVVVSALKGITDCLIRYANTFDKSAALEIEEIYEEFAKE 70 (327)
T ss_pred CEEEEECCcchHH---------HHHHHHHHHHHHhc-CCCEEEEeCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999998862 27888888886544 5789999998 4 455666 67777
Q ss_pred cCC-------------------CccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc----Cc----ccc----cc
Q 026370 151 SGL-------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM----SE----VAE----PY 199 (239)
Q Consensus 151 ~Gi-------------------~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i----~~----i~e----~y 199 (239)
++. ++...|++.-...++++.++.. |+++..+.+..+ +. ..+ ..
T Consensus 71 L~~~~~~~~~~l~~~~~~~~l~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~ 145 (327)
T TIGR02078 71 LGVDLNILSPYLKELFNPPDLPKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIFFAKGDFGNAFIDIKKSKR 145 (327)
T ss_pred hccchhhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHHhccCCcCCceeechhhhHh
Confidence 765 3446799999999999999987 566655543222 11 000 12
Q ss_pred hHHHHHHHHhCCCEEEEeCCCCCc--ccc------chHHHHHHhhhcC
Q 026370 200 IRRRAVRHLEKGRVVIFAAGTGNP--FFT------TDTAAALRCAEIS 239 (239)
Q Consensus 200 ~~~ea~~~L~~G~IvVfagGtg~P--~fT------TDt~AAlrA~Ei~ 239 (239)
+.+.+.+.+++|.|||+.|-.++. +.| +|+.|+++|..++
T Consensus 146 ~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~ 193 (327)
T TIGR02078 146 NAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLN 193 (327)
T ss_pred hHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcC
Confidence 456778889999999997666554 333 4999999998764
No 61
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=98.67 E-value=5.1e-07 Score=91.82 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=94.5
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC----Chhhhhh-hhhhhcC--C--CccchhH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG----GNIFRGA-SAAGNSG--L--DRSSADY 160 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG----GniaRg~-~~Ar~~G--i--~r~~aD~ 160 (239)
.||||+|+||+.|..+++ .++.+.+++++++|+++.+.|++++||.=| |+-.-+. +...++. + ++...|.
T Consensus 15 ~~~iViK~G~ssl~~~~~-~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (718)
T PLN02418 15 VKRVVIKVGTAVVTRDDG-RLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMELDG 93 (718)
T ss_pred CCEEEEEeCCCeecCCCC-CccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchHHH
Confidence 579999999999986532 499999999999999999999998888766 4433332 1100110 1 2323454
Q ss_pred HHHHHH--HHHHHHHHHHHHhcCCCce-EE-ecccc--CcccccchHHHHHHHHhCCCEEEEeCCCCCc-----------
Q 026370 161 IGMLAT--VMNAIFLQATMESIGIPTR-VQ-TAFRM--SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNP----------- 223 (239)
Q Consensus 161 IGMlAT--~LNAllL~~aL~~~gi~a~-v~-SAi~i--~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P----------- 223 (239)
.-..|. .+-..+...+|..+|+++. ++ +.-.. .+.. ....+.+.++|+.|.|||+.+....+
T Consensus 94 qa~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~~~~~-~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~~~ 172 (718)
T PLN02418 94 KACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRDPDFR-KQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDSSG 172 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcchhHh-HhHHHHHHHHHHCCCEEEEcCCCCccccccccccccC
Confidence 333333 5566677888999998643 22 11000 1111 11356677889999999995421111
Q ss_pred cc-cchHHHHHHhhhcC
Q 026370 224 FF-TTDTAAALRCAEIS 239 (239)
Q Consensus 224 ~f-TTDt~AAlrA~Ei~ 239 (239)
-| .+|++|+++|..++
T Consensus 173 ~~~d~D~~A~~lA~~l~ 189 (718)
T PLN02418 173 IFWDNDSLAALLALELK 189 (718)
T ss_pred eecCcHHHHHHHHHHcC
Confidence 24 49999999998875
No 62
>PRK08373 aspartate kinase; Validated
Probab=98.67 E-value=4.8e-07 Score=85.10 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=97.9
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhh-------------------h-hhh
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRG-------------------A-SAA 148 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg-------------------~-~~A 148 (239)
++++|+|.||+.+.. .++++++.|+.. .+|.+++||+=. |.+-.. | +.+
T Consensus 3 ~~m~V~KFGGsSv~~---------~~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~ 72 (341)
T PRK08373 3 EKMIVVKFGGSSVRY---------DFEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFA 72 (341)
T ss_pred CCCEEEEECCcchHh---------HHHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 578899999999853 357777777754 456889988876 221111 1 222
Q ss_pred hhcCC--------------------CccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc----Ccc--cc-----
Q 026370 149 GNSGL--------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM----SEV--AE----- 197 (239)
Q Consensus 149 r~~Gi--------------------~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i----~~i--~e----- 197 (239)
++++. +....|++.-...++++.++..+|...|+++..+++..+ +.. .+
T Consensus 73 ~~L~~~~~~~~~~l~~~~~~~~~~~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~ 152 (341)
T PRK08373 73 KRLGIDLEILSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKK 152 (341)
T ss_pred HHhccchhhHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhh
Confidence 22322 233468888889999999999999999999988865432 111 00
Q ss_pred -cchHHHHHHHHhCCCEEEEeCCCCCc--cccc------hHHHHHHhhhcC
Q 026370 198 -PYIRRRAVRHLEKGRVVIFAAGTGNP--FFTT------DTAAALRCAEIS 239 (239)
Q Consensus 198 -~y~~~ea~~~L~~G~IvVfagGtg~P--~fTT------Dt~AAlrA~Ei~ 239 (239)
..+.+.+.+.+++|.|||++|..|++ ..|| |+.|+++|..++
T Consensus 153 s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~ 203 (341)
T PRK08373 153 SKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLN 203 (341)
T ss_pred hhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcC
Confidence 12346788899999999998776653 4555 999999998764
No 63
>PLN02825 amino-acid N-acetyltransferase
Probab=98.60 E-value=3.8e-07 Score=90.01 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=91.5
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc-----------h
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS-----------A 158 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~-----------a 158 (239)
-|++|||+||+++..+ .+..++..|+.|...|.+++||||||......- ++.|+.... .
T Consensus 17 gktfVIk~gG~~l~~~--------~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l--~~~gi~~~f~~G~RVTd~~~L 86 (515)
T PLN02825 17 GSTFVVVISGEVVAGP--------HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLL--AERGREPKYVGAYRITDSAAL 86 (515)
T ss_pred CCEEEEEECchhhcCc--------hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHH--HHcCCCceeeCCcccCCHHHH
Confidence 5689999999998633 458899999999899999999999998865542 234443222 2
Q ss_pred hHHHHHHHHHHHHHHHH--------HHHhcCCCc-------eEE-----eccccCcccc--cc---------hHHHHHHH
Q 026370 159 DYIGMLATVMNAIFLQA--------TMESIGIPT-------RVQ-----TAFRMSEVAE--PY---------IRRRAVRH 207 (239)
Q Consensus 159 D~IGMlAT~LNAllL~~--------aL~~~gi~a-------~v~-----SAi~i~~i~e--~y---------~~~ea~~~ 207 (239)
+..-.++-.+|-.+.+. .|.+.|+++ .+. .|-+.+ +.+ +| +.+-+.+.
T Consensus 87 ~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~g-v~dgvD~g~vG~V~~Vd~~~i~~~ 165 (515)
T PLN02825 87 QASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRG-VVNGVDFGATGEVKKIDVSRIKER 165 (515)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECC-CCcCccccceeeEEEEcHHHHHHH
Confidence 22212232555555543 356666654 222 222221 111 12 67788889
Q ss_pred HhCCCEEEEe----CCCCCcc-ccchHHHHHHhhhcC
Q 026370 208 LEKGRVVIFA----AGTGNPF-FTTDTAAALRCAEIS 239 (239)
Q Consensus 208 L~~G~IvVfa----gGtg~P~-fTTDt~AAlrA~Ei~ 239 (239)
|+.|.|||++ ..+|++| ...|.+|+-.|+.++
T Consensus 166 L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~ 202 (515)
T PLN02825 166 LDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIG 202 (515)
T ss_pred HhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcC
Confidence 9999999997 5677773 678999999888764
No 64
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=98.58 E-value=9.1e-07 Score=81.47 Aligned_cols=138 Identities=22% Similarity=0.236 Sum_probs=92.6
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhh----h---------------------
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRG----A--------------------- 145 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg----~--------------------- 145 (239)
+.|+|+||+.+.. .+.++++++.|++. +.+++||+=. |.+-.. .
T Consensus 1 m~V~KFGGtSv~~-------~~~i~~v~~ii~~~---~~~~vVVVSA~~~vTd~L~~~~~~~~~~~~~~~~~~l~~l~~~ 70 (292)
T cd04258 1 MVVAKFGGTSVAD-------YAAMLRCAAIVKSD---ASVRLVVVSASAGVTNLLVALADAAESGEEIESIPQLHEIRAI 70 (292)
T ss_pred CEEEEECccccCC-------HHHHHHHHHHHhcc---CCCEEEEEeCCCCchHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4688999998863 46889999988753 4677877764 221111 0
Q ss_pred --hhhhhcC----------------------------CCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc---
Q 026370 146 --SAAGNSG----------------------------LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM--- 192 (239)
Q Consensus 146 --~~Ar~~G----------------------------i~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i--- 192 (239)
..++++. .++...|++.....++++.+|..+|+..|+++..+++...
T Consensus 71 h~~~~~~L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t 150 (292)
T cd04258 71 HFAILNRLGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRT 150 (292)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEe
Confidence 1111111 1233568999999999999999999999999999877443
Q ss_pred -C--cccccc---hH---HHHHHHHhCCCEEEEeCCCCCc--cccc-------hHHHHHHhhhcC
Q 026370 193 -S--EVAEPY---IR---RRAVRHLEKGRVVIFAAGTGNP--FFTT-------DTAAALRCAEIS 239 (239)
Q Consensus 193 -~--~i~e~y---~~---~ea~~~L~~G~IvVfagGtg~P--~fTT-------Dt~AAlrA~Ei~ 239 (239)
+ .-++.+ +. .+..+.+.+++|||+.|..|.+ +.+| |+.|+++|..++
T Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~ 215 (292)
T cd04258 151 DSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALH 215 (292)
T ss_pred cCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcC
Confidence 1 112221 11 2334445678999997777765 4555 999999998764
No 65
>PRK06291 aspartate kinase; Provisional
Probab=98.56 E-value=1.5e-06 Score=84.01 Aligned_cols=142 Identities=23% Similarity=0.309 Sum_probs=95.0
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhh-hhhh--------------------
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRG-ASAA-------------------- 148 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg-~~~A-------------------- 148 (239)
+++|.|+||+.+. |.+.++++++.|++..++|+++++|+=. |.+-.. .+++
T Consensus 1 ~~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~ 73 (465)
T PRK06291 1 MRLVMKFGGTSVG-------DGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLR 73 (465)
T ss_pred CcEEEEeCcccCC-------CHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 4689999999886 3468999999999766677888988865 211111 0110
Q ss_pred -------hhc--------------------------------CCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 026370 149 -------GNS--------------------------------GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 189 (239)
Q Consensus 149 -------r~~--------------------------------Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SA 189 (239)
.++ ..++...|++--..-++++.+|..+|+..|+++..+++
T Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~ 153 (465)
T PRK06291 74 ERHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTG 153 (465)
T ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEch
Confidence 000 11233457777777899999999999999999988876
Q ss_pred cccC-----c-----c---cccchHHHHHHHHhCCCEEEEeC--C-CCCccccc------hHHHHHHhhhcC
Q 026370 190 FRMS-----E-----V---AEPYIRRRAVRHLEKGRVVIFAA--G-TGNPFFTT------DTAAALRCAEIS 239 (239)
Q Consensus 190 i~i~-----~-----i---~e~y~~~ea~~~L~~G~IvVfag--G-tg~P~fTT------Dt~AAlrA~Ei~ 239 (239)
...+ . + ...+..+.+.++++.|.|||++| | +.+...|| |+.|+++|..++
T Consensus 154 ~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~ 225 (465)
T PRK06291 154 GEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALD 225 (465)
T ss_pred HHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcC
Confidence 4431 1 1 01223335666788999999865 2 22333433 999999998764
No 66
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=98.53 E-value=3.2e-06 Score=77.49 Aligned_cols=140 Identities=21% Similarity=0.328 Sum_probs=92.7
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc--------hhHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS--------ADYI 161 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~--------aD~I 161 (239)
.|++|||+||+++..+ +..+.+++.|.-+...|.+.+||||||...-.. .+++|+.... .+.|
T Consensus 2 ~k~~VIK~GG~~~~~~-------~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~--l~~~gie~~f~~glRvTd~~tl 72 (265)
T COG0548 2 GKTIVIKLGGSAMEDE-------NLLEAFASDIALLKSVGIRPVVVHGGGPQIDEM--LAKLGIEPEFVKGLRVTDAETL 72 (265)
T ss_pred CceEEEEECceeecCc-------hHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHH--HHHcCCCCeeeCCEEcCCHHHH
Confidence 4789999999998755 367999999999999999999999999885553 2234443222 2222
Q ss_pred HH----HHHHHHHHHHHHHHHhcCCCc--------eEEeccccCcc----------cccchHHHHHHHHhCCCEEEEe--
Q 026370 162 GM----LATVMNAIFLQATMESIGIPT--------RVQTAFRMSEV----------AEPYIRRRAVRHLEKGRVVIFA-- 217 (239)
Q Consensus 162 GM----lAT~LNAllL~~aL~~~gi~a--------~v~SAi~i~~i----------~e~y~~~ea~~~L~~G~IvVfa-- 217 (239)
-+ ++-.+|-.+... |...|..+ .++.|-..+.. .+.-+.+.+...+++|.|||.+
T Consensus 73 evv~mvl~G~vNk~iva~-l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapi 151 (265)
T COG0548 73 EVVEMVLGGTVNKEIVAR-LSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPI 151 (265)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecc
Confidence 22 222566555544 55556533 23323222111 1122677888999999999997
Q ss_pred --CCCCCcc-ccchHHHHHHhhhcC
Q 026370 218 --AGTGNPF-FTTDTAAALRCAEIS 239 (239)
Q Consensus 218 --gGtg~P~-fTTDt~AAlrA~Ei~ 239 (239)
+-.|++| ..-|++|+-.|..++
T Consensus 152 a~~~~G~~~NvnaD~~A~~iA~aLk 176 (265)
T COG0548 152 AVDEDGETLNVNADTAAGALAAALK 176 (265)
T ss_pred eECCCCcEEeeCHHHHHHHHHHHcC
Confidence 5566664 567999988887764
No 67
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=98.51 E-value=2.6e-06 Score=78.34 Aligned_cols=140 Identities=26% Similarity=0.377 Sum_probs=91.8
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhh----h---------------------
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRG----A--------------------- 145 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg----~--------------------- 145 (239)
|+|+|+||+.+. +.+.++++++.|++. .++++++||+=. |.+-.. .
T Consensus 1 ~~V~KFGGtSv~-------~~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~ 72 (298)
T cd04244 1 RLVMKFGGTSVG-------SAERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLR 72 (298)
T ss_pred CEEEEECcccCC-------CHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 679999999986 356899999999976 456788888864 221111 0
Q ss_pred --hhhhhcC-------------------------------CCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc
Q 026370 146 --SAAGNSG-------------------------------LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 192 (239)
Q Consensus 146 --~~Ar~~G-------------------------------i~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i 192 (239)
+.++++. .++...|++--..-++++.+|..+|+..|+++..+++...
T Consensus 73 h~~~~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~ 152 (298)
T cd04244 73 HIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEA 152 (298)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHc
Confidence 1111111 1223456676667799999999999999999988876443
Q ss_pred C-----ccc--------ccchHHHHHHHHhCCCEEEEeC--C-CCCccccc------hHHHHHHhhhcC
Q 026370 193 S-----EVA--------EPYIRRRAVRHLEKGRVVIFAA--G-TGNPFFTT------DTAAALRCAEIS 239 (239)
Q Consensus 193 ~-----~i~--------e~y~~~ea~~~L~~G~IvVfag--G-tg~P~fTT------Dt~AAlrA~Ei~ 239 (239)
+ ..- ..+....+.+.+++|.|||++| | +.+...|| |+.|+++|..++
T Consensus 153 ~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~ 221 (298)
T cd04244 153 GIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALD 221 (298)
T ss_pred ceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcC
Confidence 2 110 1112223455678899999965 2 23334444 999999998764
No 68
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.37 E-value=4.1e-06 Score=73.85 Aligned_cols=118 Identities=16% Similarity=0.225 Sum_probs=77.9
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccchhHHHHHHHHHHHHH
Q 026370 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIF 172 (239)
Q Consensus 94 VIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD~IGMlAT~LNAll 172 (239)
|||.+|+-.. +.++.+-+.|..+ +.++.||.|||-++.-. ..-+++|++...+|+|.|.+|-+.+.+
T Consensus 3 vVk~~Gs~~~---------~~~~~~~~ale~~---~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~ 70 (212)
T COG2054 3 VVKKGGSGVA---------ERAAAVKEALENL---QRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFY 70 (212)
T ss_pred eEEecCCChH---------HHHHHHHHHHHhh---cceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 6677888432 1233333333332 22699999999998775 444679999999999999999999999
Q ss_pred HHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEe----CCCCCc-----cccchHHHHHHhhhcC
Q 026370 173 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFA----AGTGNP-----FFTTDTAAALRCAEIS 239 (239)
Q Consensus 173 L~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfa----gGtg~P-----~fTTDt~AAlrA~Ei~ 239 (239)
+++......+.+.. +.++..+.+.++|+- =-..+| -.|+|+.|+|.|.+.+
T Consensus 71 lad~~~~~~~~tv~----------------ep~~~i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~ 130 (212)
T COG2054 71 LADLASRFVTDTVT----------------EPEDGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAG 130 (212)
T ss_pred HHhhhcccccceee----------------chhhccCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcC
Confidence 99976664433221 233444444444431 012233 5799999999998764
No 69
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=98.22 E-value=2.8e-05 Score=75.71 Aligned_cols=141 Identities=23% Similarity=0.267 Sum_probs=91.8
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCCh-hhhh-hhhhh-------------------h
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRG-ASAAG-------------------N 150 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGn-iaRg-~~~Ar-------------------~ 150 (239)
++|.|.||..+. |.+.+++.|+.+++..+.|++++||+=.+. .=.. ..+++ +
T Consensus 3 ~iV~KFGGTSva-------~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~e 75 (447)
T COG0527 3 LIVQKFGGTSVA-------DAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASE 75 (447)
T ss_pred eEEEEeCCcccC-------CHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 799999999886 357999999999998888999999987652 1111 12221 2
Q ss_pred cCCCc----------------------------cchhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCccccc----
Q 026370 151 SGLDR----------------------------SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---- 198 (239)
Q Consensus 151 ~Gi~r----------------------------~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~---- 198 (239)
+..+. ...|++==..=++++.+|..+|+..|+++..+.+...+-+.+.
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~ 155 (447)
T COG0527 76 LILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGN 155 (447)
T ss_pred HhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccc
Confidence 22222 2233322222299999999999999999988865533111111
Q ss_pred -----chHHH-HHHHHhCCCEEEEeC---CCCCcccc------chHHHHHHhhhcC
Q 026370 199 -----YIRRR-AVRHLEKGRVVIFAA---GTGNPFFT------TDTAAALRCAEIS 239 (239)
Q Consensus 199 -----y~~~e-a~~~L~~G~IvVfag---Gtg~P~fT------TDt~AAlrA~Ei~ 239 (239)
-..++ +.+.+++++|||++| .+-+=..| +|+.|+++|.-++
T Consensus 156 a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~ 211 (447)
T COG0527 156 ARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALG 211 (447)
T ss_pred cccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcC
Confidence 12344 777899999999962 11111222 4999999887553
No 70
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=97.99 E-value=0.00014 Score=66.91 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEecccc----Ccc---cccc--hHHHHHHHHhC-CCEEEEeCCCC--Cccccc-------
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRM----SEV---AEPY--IRRRAVRHLEK-GRVVIFAAGTG--NPFFTT------- 227 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i----~~i---~e~y--~~~ea~~~L~~-G~IvVfagGtg--~P~fTT------- 227 (239)
++.+.++..+|++.|+++..+.+... +.. ...+ +.+.+.+.++. ++|||+.|--| .++.+|
T Consensus 125 ~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggs 204 (293)
T cd04243 125 LLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGS 204 (293)
T ss_pred HHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCc
Confidence 88999999999999999888865222 111 1111 13356666766 89999843322 378999
Q ss_pred hHHHHHHhhhcC
Q 026370 228 DTAAALRCAEIS 239 (239)
Q Consensus 228 Dt~AAlrA~Ei~ 239 (239)
|+.|+++|..++
T Consensus 205 D~~A~~~a~~l~ 216 (293)
T cd04243 205 DYSAALLAALLD 216 (293)
T ss_pred HHHHHHHHHHcC
Confidence 999999998874
No 71
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=97.98 E-value=0.00017 Score=66.62 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=84.4
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhh----hh--------------------
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRG----AS-------------------- 146 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg----~~-------------------- 146 (239)
++|.|+||+.+. +.+.++++++.|++-.+++.+++||+=. |.+-.. .+
T Consensus 1 ~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~ 73 (295)
T cd04259 1 WVVLKFGGTSVS-------SRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLN 73 (295)
T ss_pred CEEEEeCccccC-------CHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 368899999886 3468899999998755666778877764 222111 01
Q ss_pred hhhhcCC--------------------------CccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc----Ccc-
Q 026370 147 AAGNSGL--------------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM----SEV- 195 (239)
Q Consensus 147 ~Ar~~Gi--------------------------~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i----~~i- 195 (239)
.++++.. +....|++==..=++.+.++..+|+..|+++..+.+..+ +..
T Consensus 74 ~~~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~ 153 (295)
T cd04259 74 LAEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLG 153 (295)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeeccccc
Confidence 1111110 111112221122288999999999999999988865333 110
Q ss_pred -----------cccchHHHHHHHHhC-CCEEEEeCCCC-Cc-cc-------cchHHHHHHhhhcC
Q 026370 196 -----------AEPYIRRRAVRHLEK-GRVVIFAAGTG-NP-FF-------TTDTAAALRCAEIS 239 (239)
Q Consensus 196 -----------~e~y~~~ea~~~L~~-G~IvVfagGtg-~P-~f-------TTDt~AAlrA~Ei~ 239 (239)
......+++.+.+.. +.|||+.|=-| ++ +- .||+.|+++|..++
T Consensus 154 ~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~ 218 (295)
T cd04259 154 GETMNYLSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQ 218 (295)
T ss_pred ccccccccceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcC
Confidence 011133566767776 57888732212 12 11 68999999998764
No 72
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=97.94 E-value=0.00016 Score=66.71 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCCceEEecccc---C-c-----ccccchHHHHHHHHhC-CCEEEEeCCCC-Cc-cccc-------
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRM---S-E-----VAEPYIRRRAVRHLEK-GRVVIFAAGTG-NP-FFTT------- 227 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i---~-~-----i~e~y~~~ea~~~L~~-G~IvVfagGtg-~P-~fTT------- 227 (239)
++.+.++..+|+..|+++..+.+... . . +-...+.+.+.+.+.. +.|||+.|--| ++ +.+|
T Consensus 126 ~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRGGS 205 (294)
T cd04257 126 RLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGS 205 (294)
T ss_pred HHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCCCch
Confidence 88999999999999999888865332 1 1 1111234556666666 89999843322 22 8888
Q ss_pred hHHHHHHhhhcC
Q 026370 228 DTAAALRCAEIS 239 (239)
Q Consensus 228 Dt~AAlrA~Ei~ 239 (239)
|+.|+++|..++
T Consensus 206 D~~A~~lA~~l~ 217 (294)
T cd04257 206 DYSAAILAALLD 217 (294)
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 73
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=97.89 E-value=0.00027 Score=64.79 Aligned_cols=146 Identities=20% Similarity=0.250 Sum_probs=91.2
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc----------cchh
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR----------SSAD 159 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r----------~~aD 159 (239)
-+|||||||-+++.+++..+....++..+++++.++.+.|++++||.-||--+-...+..+.-++- .+++
T Consensus 9 a~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~l~e 88 (285)
T KOG1154|consen 9 AYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSELAE 88 (285)
T ss_pred ceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCccchhh
Confidence 579999999999999888888899999999999999999999999987653322223322222211 1222
Q ss_pred HHHHHHH---HHHHHHHHHHHHhcCCCc-eE-EeccccCcccccc----hHHHHHHHHhCCCEEEEe-CCCCC----ccc
Q 026370 160 YIGMLAT---VMNAIFLQATMESIGIPT-RV-QTAFRMSEVAEPY----IRRRAVRHLEKGRVVIFA-AGTGN----PFF 225 (239)
Q Consensus 160 ~IGMlAT---~LNAllL~~aL~~~gi~a-~v-~SAi~i~~i~e~y----~~~ea~~~L~~G~IvVfa-gGtg~----P~f 225 (239)
.-.+-|. ++-++ -...|..++++. .+ ++ -+.|.+.. -...+.+.|.-+-|||+- -.+-. ||-
T Consensus 89 ~rA~AAvGQ~~Lmal-ye~lF~Qy~~~iAQvLvT---~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~ 164 (285)
T KOG1154|consen 89 KRACAAVGQSGLMAL-YETLFTQYGITIAQVLVT---RNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFG 164 (285)
T ss_pred HHHHHHhCcchHHHH-HHHHHHHhccchheeeec---CcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccC
Confidence 2233332 23332 244566777652 22 22 12233222 123467789999999983 11111 233
Q ss_pred c---chHHHHHHhhhcC
Q 026370 226 T---TDTAAALRCAEIS 239 (239)
Q Consensus 226 T---TDt~AAlrA~Ei~ 239 (239)
- -|+.||++|.||+
T Consensus 165 D~~dNDsLsA~laaei~ 181 (285)
T KOG1154|consen 165 DSSDNDSLAAILAAEIK 181 (285)
T ss_pred CCCcccHHHHHHHHHhc
Confidence 3 6899999999985
No 74
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00041 Score=66.28 Aligned_cols=139 Identities=26% Similarity=0.348 Sum_probs=88.7
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc---hhHHHHHH
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS---ADYIGMLA 165 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~---aD~IGMlA 165 (239)
++||||||+|=+.|..+ ...+|...+.++++++.++.+.|+||+||.= |-++-|... +|+++-. +..-..-|
T Consensus 5 ~~~riVvKiGSs~Lt~~-~g~l~~~~l~~l~~~ia~L~~~G~eVilVSS-GAiaaG~~~---Lg~~~rp~~l~~kQA~AA 79 (369)
T COG0263 5 SARRIVVKIGSSSLTDG-TGGLDRSKLEELVRQVAALHKAGHEVVLVSS-GAIAAGRTR---LGLPKRPKTLAEKQAAAA 79 (369)
T ss_pred cceEEEEEECcceeeCC-CCCcCHHHHHHHHHHHHHHHhCCCEEEEEcc-chhhhChhh---cCCCCCCcchHHHHHHHH
Confidence 38999999999999876 3459999999999999999999999988754 566666532 4543332 33322222
Q ss_pred H--HHHHHHHHHHHHhcCCCc--eEEeccccCccccc--c--hHHHHHHHHhCCCEEEEeCCCCCc--------cccchH
Q 026370 166 T--VMNAIFLQATMESIGIPT--RVQTAFRMSEVAEP--Y--IRRRAVRHLEKGRVVIFAAGTGNP--------FFTTDT 229 (239)
Q Consensus 166 T--~LNAllL~~aL~~~gi~a--~v~SAi~i~~i~e~--y--~~~ea~~~L~~G~IvVfagGtg~P--------~fTTDt 229 (239)
- ..--.+-...|..+|++. .+++. ..+.+. | -+..+...|+.|-|||. .=|= |=--|+
T Consensus 80 VGQ~~Lm~~y~~~f~~~g~~v~QiLLTr---~D~~~r~ry~Nar~Tl~~Ll~~gvVPII---NENDtva~~EikfGDND~ 153 (369)
T COG0263 80 VGQVRLMQLYEELFARYGIKVGQILLTR---DDFSDRRRYLNARNTLSALLELGVVPII---NENDTVATEEIKFGDNDT 153 (369)
T ss_pred hCHHHHHHHHHHHHHhcCCeeeEEEeeh---hhhhhHHHHHHHHHHHHHHHHCCceeee---cCCCceeeeeeeecCCch
Confidence 2 111122356677888763 22221 112222 2 33456677899999997 2222 333488
Q ss_pred HHHHHhhhc
Q 026370 230 AAALRCAEI 238 (239)
Q Consensus 230 ~AAlrA~Ei 238 (239)
.||+.|.-+
T Consensus 154 LsA~VA~lv 162 (369)
T COG0263 154 LSALVAILV 162 (369)
T ss_pred HHHHHHHHh
Confidence 899888755
No 75
>PRK09034 aspartate kinase; Reviewed
Probab=97.86 E-value=0.00026 Score=68.49 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcccc---------cchHHHHHHHHhCCCEEEEeCCCC-Cc-c-
Q 026370 157 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE---------PYIRRRAVRHLEKGRVVIFAAGTG-NP-F- 224 (239)
Q Consensus 157 ~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e---------~y~~~ea~~~L~~G~IvVfagGtg-~P-~- 224 (239)
..|++==...++++.+|..+|++.|+++..+++..++-+.+ ....+++.+.+..+.|+|+.|=-| ++ +
T Consensus 111 ~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~ 190 (454)
T PRK09034 111 LLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQ 190 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCC
Confidence 34666556669999999999999999999997755522211 113466666667777888742211 11 1
Q ss_pred ------ccchHHHHHHhhhcC
Q 026370 225 ------FTTDTAAALRCAEIS 239 (239)
Q Consensus 225 ------fTTDt~AAlrA~Ei~ 239 (239)
=.||+.|+++|..++
T Consensus 191 ~ttlgRggSD~tA~~la~~l~ 211 (454)
T PRK09034 191 IVTFSRGGSDITGAILARGVK 211 (454)
T ss_pred EEecCCCcHHHHHHHHHHHcC
Confidence 168999999998864
No 76
>PRK09084 aspartate kinase III; Validated
Probab=97.76 E-value=0.00033 Score=67.80 Aligned_cols=137 Identities=20% Similarity=0.210 Sum_probs=83.7
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhhh-hhh---------------------
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGA-SAA--------------------- 148 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg~-~~A--------------------- 148 (239)
|+|.|.||+.+. |.+.++++++.|++ ++.+++||+=. |.+=..- +++
T Consensus 1 m~V~KFGGtSv~-------~~e~i~~v~~ii~~---~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~ 70 (448)
T PRK09084 1 LVVAKFGGTSVA-------DFDAMNRSADIVLS---NPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQY 70 (448)
T ss_pred CEEEEECccCcC-------CHHHHHHHHHHHhc---CCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 578999999886 45789999999975 46788888865 2221110 111
Q ss_pred ---hhcCC--------------------------CccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc----Ccc
Q 026370 149 ---GNSGL--------------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM----SEV 195 (239)
Q Consensus 149 ---r~~Gi--------------------------~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i----~~i 195 (239)
++++. +....|++==..=++.+.++..+|++.|+++..+++..+ +..
T Consensus 71 ~~~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~ 150 (448)
T PRK09084 71 AILDRLGDPNVVREEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRF 150 (448)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCC
Confidence 11111 111223222222288999999999999999888865332 111
Q ss_pred --ccc---chH----HHHHHHHhCCCEEEEeC--CCCCccccc-------hHHHHHHhhhcC
Q 026370 196 --AEP---YIR----RRAVRHLEKGRVVIFAA--GTGNPFFTT-------DTAAALRCAEIS 239 (239)
Q Consensus 196 --~e~---y~~----~ea~~~L~~G~IvVfag--Gtg~P~fTT-------Dt~AAlrA~Ei~ 239 (239)
+++ ... ..+.+.++.+ |||+.| |....+.+| |+.|+++|..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~ 211 (448)
T PRK09084 151 GRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALN 211 (448)
T ss_pred CcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcC
Confidence 111 111 2344456777 888844 223567777 999999998764
No 77
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=96.98 E-value=0.0083 Score=62.39 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEecccc----Cccc-----ccchHHHHHHHH-hCCCEEEEeCCCCCcccc----------
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRM----SEVA-----EPYIRRRAVRHL-EKGRVVIFAAGTGNPFFT---------- 226 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i----~~i~-----e~y~~~ea~~~L-~~G~IvVfagGtg~P~fT---------- 226 (239)
++.+.+|..+|++.|+++..+.+... +... .....+.+.+.+ +.++|||+. |..+.-.
T Consensus 128 ~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~--Gfig~~~~G~~ttlGRg 205 (819)
T PRK09436 128 RLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMP--GFTAGNEKGELVTLGRN 205 (819)
T ss_pred HHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEec--CcccCCCCCCEEEeCCC
Confidence 78999999999999999888865322 1111 112334455544 357899983 2333222
Q ss_pred -chHHHHHHhhhcC
Q 026370 227 -TDTAAALRCAEIS 239 (239)
Q Consensus 227 -TDt~AAlrA~Ei~ 239 (239)
||+.|+++|..++
T Consensus 206 GSD~~A~~~A~~l~ 219 (819)
T PRK09436 206 GSDYSAAILAACLD 219 (819)
T ss_pred CchHHHHHHHHHcC
Confidence 5999999998874
No 78
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=96.91 E-value=0.0064 Score=63.30 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=33.2
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG 138 (239)
+++|.|.||+.+. +.+.++++++.|++-.++|.+++||+=.
T Consensus 8 ~~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vvVvSA 48 (861)
T PRK08961 8 RWVVLKFGGTSVS-------RRHRWDTIAKIVRKRLAEGGRVLVVVSA 48 (861)
T ss_pred CcEEEEECccccC-------CHHHHHHHHHHHHhhcccCCCEEEEEeC
Confidence 4678999999886 3468999999998766677888888865
No 79
>PLN02551 aspartokinase
Probab=96.89 E-value=0.019 Score=57.08 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEeccccCcccc---------cchHHHHHHHH-----hCCCEEEEeCCCC-C-c-ccc---
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE---------PYIRRRAVRHL-----EKGRVVIFAAGTG-N-P-FFT--- 226 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e---------~y~~~ea~~~L-----~~G~IvVfagGtg-~-P-~fT--- 226 (239)
++.+.+|..+|++.|+++..+.+...+-+.+ ..+.+++.+.+ +.+.|||+.|=-| + | +-+
T Consensus 174 ~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttL 253 (521)
T PLN02551 174 RMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTL 253 (521)
T ss_pred HHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEec
Confidence 8899999999999999999987655421111 11223343444 3568999844323 1 2 333
Q ss_pred ----chHHHHHHhhhcC
Q 026370 227 ----TDTAAALRCAEIS 239 (239)
Q Consensus 227 ----TDt~AAlrA~Ei~ 239 (239)
+|+.|+++|..++
T Consensus 254 GRGGSD~sA~~la~~L~ 270 (521)
T PLN02551 254 GRGGSDLTATTIGKALG 270 (521)
T ss_pred CCChHHHHHHHHHHHcC
Confidence 4999999998764
No 80
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=95.92 E-value=0.13 Score=53.80 Aligned_cols=73 Identities=21% Similarity=0.144 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEecccc---C-----cccccchHHHHHHHHhCC--CEEEEeCCCC-Cc-ccc-------c
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRM---S-----EVAEPYIRRRAVRHLEKG--RVVIFAAGTG-NP-FFT-------T 227 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i---~-----~i~e~y~~~ea~~~L~~G--~IvVfagGtg-~P-~fT-------T 227 (239)
++.+.+|..+|+..|+++..+.+..+ . .+......+++.+.+..+ .|||+.|=-| ++ +.+ +
T Consensus 131 ~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGS 210 (810)
T PRK09466 131 VWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGS 210 (810)
T ss_pred HHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEEcCCChH
Confidence 78999999999999999988865333 1 121221345666767654 7888853212 22 333 3
Q ss_pred hHHHHHHhhhcC
Q 026370 228 DTAAALRCAEIS 239 (239)
Q Consensus 228 Dt~AAlrA~Ei~ 239 (239)
|+.|+++|.-++
T Consensus 211 D~tA~~la~~l~ 222 (810)
T PRK09466 211 DYSATLIGALAG 222 (810)
T ss_pred HHHHHHHHHHcC
Confidence 999999987653
No 81
>PRK05925 aspartate kinase; Provisional
Probab=95.86 E-value=0.13 Score=50.14 Aligned_cols=137 Identities=13% Similarity=0.099 Sum_probs=78.3
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhhh-hhh---------------------
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGA-SAA--------------------- 148 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg~-~~A--------------------- 148 (239)
++|.|.||+.+.. .+.++++++.|++ + .+++||+=. |.+=..- .++
T Consensus 3 ~~V~KFGGtSv~~-------~e~i~~v~~ii~~--~--~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~i~~~~~~~ 71 (440)
T PRK05925 3 PLVYKFGGTSLGT-------AESIRRVCDIICK--E--KPSFVVVSAVAGVTDLLEEFCRLSKGKREALTEKIREKHEEI 71 (440)
T ss_pred cEEEEECccccCC-------HHHHHHHHHHHhc--C--CCEEEEECCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5799999999863 4688999998875 2 356777655 2221110 111
Q ss_pred -hhcCC--------------------CccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc---C------ccccc
Q 026370 149 -GNSGL--------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM---S------EVAEP 198 (239)
Q Consensus 149 -r~~Gi--------------------~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i---~------~i~e~ 198 (239)
.+++. +....|++==..=++.+.++..+|++.|+++..+.+... + .+-..
T Consensus 72 ~~~l~~~~~~~~~~~~L~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~ 151 (440)
T PRK05925 72 AKELGIEFSLSPWWERLEHFEDVEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLA 151 (440)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHH
Confidence 11111 111223222223388999999999999999888866332 1 11001
Q ss_pred chHHHHHH-HHhCCCEEEEeCCCC-Cc-c-------ccchHHHHHHhhhcC
Q 026370 199 YIRRRAVR-HLEKGRVVIFAAGTG-NP-F-------FTTDTAAALRCAEIS 239 (239)
Q Consensus 199 y~~~ea~~-~L~~G~IvVfagGtg-~P-~-------fTTDt~AAlrA~Ei~ 239 (239)
...+...+ .++++.|||+.|=.| +| + =-+|+.|+++|..++
T Consensus 152 ~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~ 202 (440)
T PRK05925 152 LMQTAWHELALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCK 202 (440)
T ss_pred HHHHHHHHhhccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcC
Confidence 11122222 345678888843312 22 2 235999999998764
No 82
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=95.84 E-value=0.13 Score=48.15 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEecccc----C---cccccc---hHHHHHHHHh--CCCEEEEeCCCC-Cc-ccc------
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRM----S---EVAEPY---IRRRAVRHLE--KGRVVIFAAGTG-NP-FFT------ 226 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i----~---~i~e~y---~~~ea~~~L~--~G~IvVfagGtg-~P-~fT------ 226 (239)
++.+.++..+|+..|+++..+.+..+ . .+...+ ..+...+.+. ++.|||+.|=-| +| +.+
T Consensus 134 ~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRg 213 (306)
T cd04247 134 KLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRG 213 (306)
T ss_pred HHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCCCeEEeCCC
Confidence 88999999999999999988865433 1 111122 1222223333 467888732112 23 333
Q ss_pred -chHHHHHHhhhcC
Q 026370 227 -TDTAAALRCAEIS 239 (239)
Q Consensus 227 -TDt~AAlrA~Ei~ 239 (239)
||+.|+++|..++
T Consensus 214 GsD~~A~~la~~l~ 227 (306)
T cd04247 214 YTDLCAALCAVGLN 227 (306)
T ss_pred chHHHHHHHHHHcC
Confidence 5999999998764
No 83
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=91.68 E-value=1.7 Score=43.75 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=86.2
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCC----------ccchhH
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD----------RSSADY 160 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~----------r~~aD~ 160 (239)
+++|+..+|+++..+ ..+.++.-+.-+...|.+.+||||+|+-.-++-+ +.|+. ...-++
T Consensus 95 q~fvV~~~g~~~~t~--------~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~--~~~ie~~y~~~~RvTda~t~q 164 (520)
T KOG2436|consen 95 QKFVVIKSGEAISTS--------LLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLA--ERGIEPEYVDGYRVTDAHTLQ 164 (520)
T ss_pred ceEEEEecccccccc--------hHHHHHHHHHHHhcCCceEEEecCccHHHHHHHH--HcCCCcccccceecccHHHHH
Confidence 456777799988544 4577778888888899999999999987666422 22332 223345
Q ss_pred HHHH-HHHHHHHHHHHHHHhcCCCceEE----------eccc--c--------CcccccchHHHHHHHHhCCCEEEEe--
Q 026370 161 IGML-ATVMNAIFLQATMESIGIPTRVQ----------TAFR--M--------SEVAEPYIRRRAVRHLEKGRVVIFA-- 217 (239)
Q Consensus 161 IGMl-AT~LNAllL~~aL~~~gi~a~v~----------SAi~--i--------~~i~e~y~~~ea~~~L~~G~IvVfa-- 217 (239)
++.+ .+..+-+=+-.+|+.+|-..+.. +|-. + .+.......+.+++.++.|-+|+++
T Consensus 165 ~~~~~~~~E~n~~lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sl 244 (520)
T KOG2436|consen 165 AAKESVSLEANLNLVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSL 244 (520)
T ss_pred HhhhcchhhhhhHHHHHHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhh
Confidence 5555 33222222555566655322222 1110 0 0111122677889999999999876
Q ss_pred --CCCCCcc-ccchHHHHHHhhhc
Q 026370 218 --AGTGNPF-FTTDTAAALRCAEI 238 (239)
Q Consensus 218 --gGtg~P~-fTTDt~AAlrA~Ei 238 (239)
.++|+-. .-+|.+|--+|.-|
T Consensus 245 a~TaSGqvlnvNa~~~a~elA~~L 268 (520)
T KOG2436|consen 245 AATASGQVLNVNADEVAGELALAL 268 (520)
T ss_pred cccCccceEEeeHHHHhhHHHhcc
Confidence 6777776 77888888887654
No 84
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=87.32 E-value=6.7 Score=31.41 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=59.9
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEECCChh------hhhh-hhhhhcCCCcc--chhHHHH
Q 026370 94 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLG-IEVAIVVGGGNI------FRGA-SAAGNSGLDRS--SADYIGM 163 (239)
Q Consensus 94 VIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G-~~I~IV~GGGni------aRg~-~~Ar~~Gi~r~--~aD~IGM 163 (239)
+|=|||..-.+.. ......++-..+. +.++| ...+|+.||... +.-. +.+.+.|++.. ..+.-+.
T Consensus 3 IvVLG~~~~~~~~----~~~~~~R~~~a~~-l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~ 77 (150)
T cd06259 3 IVVLGGGVNGDGP----SPILAERLDAAAE-LYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRST 77 (150)
T ss_pred EEEeCCccCCCCC----ChHHHHHHHHHHH-HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCC
Confidence 4557888443322 1333344444443 34445 556666666321 1111 33344454332 2222222
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCC
Q 026370 164 LATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGR 212 (239)
Q Consensus 164 lAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~ 212 (239)
. |..|+......+++.+++..++ |.++|..+++...+++-.
T Consensus 78 ~-T~ena~~~~~~~~~~~~~~i~l-------VTs~~H~~Ra~~~~~~~~ 118 (150)
T cd06259 78 N-TYENARFSAELLRERGIRSVLL-------VTSAYHMPRALLIFRKAG 118 (150)
T ss_pred C-HHHHHHHHHHHHHhcCCCeEEE-------ECCHHHHHHHHHHHHHcC
Confidence 2 8999999999999988765544 567888888888877754
No 85
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=84.80 E-value=22 Score=29.79 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred cccEEEEEeccccccCCCC--CCCCHHHH----HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHH
Q 026370 89 KWQRVLLKVSGEALAGDHT--QNIDPKIT----MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIG 162 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~--~gid~~~l----~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IG 162 (239)
+.|.+++-+-|=.+..++. +.-+++.+ ..+.+.|.+|.++|++++||..+...+|+..-.. .
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~------------~ 79 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAE------------S 79 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHH------------H
Confidence 4678888988876653321 22344444 4578888888889999999998777766642110 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEE--eccccCcccccchHHHHHHHHh----CCCEEEEeCCC-CCcccc--chHHHHH
Q 026370 163 MLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGT-GNPFFT--TDTAAAL 233 (239)
Q Consensus 163 MlAT~LNAllL~~aL~~~gi~a~v~--SAi~i~~i~e~y~~~ea~~~L~----~G~IvVfagGt-g~P~fT--TDt~AAl 233 (239)
. .-.+...|+..|++-..+ +.-....-+++..++.+.+.+. ....+++ |.+ +.|-++ +|.-||.
T Consensus 80 -----~-~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~V-GD~~~~~~~~~~~Di~aA~ 152 (166)
T TIGR01664 80 -----F-KNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYV-GDAAGRKLDFSDADIKFAK 152 (166)
T ss_pred -----H-HHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEE-ECCCCCCCCCchhHHHHHH
Confidence 0 113344566666643111 1110112333344566666654 3345555 332 345444 8888887
Q ss_pred Hh
Q 026370 234 RC 235 (239)
Q Consensus 234 rA 235 (239)
.|
T Consensus 153 ~a 154 (166)
T TIGR01664 153 NL 154 (166)
T ss_pred HC
Confidence 65
No 86
>PRK09181 aspartate kinase; Validated
Probab=78.62 E-value=10 Score=37.51 Aligned_cols=70 Identities=7% Similarity=0.056 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEec--cccCcccccchHHHHHHHHh----CCCEEEEeCCCC-Cc-ccc-------chHHH
Q 026370 167 VMNAIFLQATMESIGIPTRVQTA--FRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGTG-NP-FFT-------TDTAA 231 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SA--i~i~~i~e~y~~~ea~~~L~----~G~IvVfagGtg-~P-~fT-------TDt~A 231 (239)
++.+.+|..+|+..|+++..+.+ +..+.. .+..+++.+.++ .++|||+.| .+ .+ +.+ +|+.|
T Consensus 148 ~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~--~~~~~~i~~~l~~~~~~~~v~Vv~G-F~~~~~G~itTLGRGGSDyTA 224 (475)
T PRK09181 148 AHSAFNTALLLQNRGVNARFVDLTGWDDDDP--LTLDERIKKAFKDIDVTKELPIVTG-YAKCKEGLMRTFDRGYSEMTF 224 (475)
T ss_pred HHHHHHHHHHHHhCCCCeEEeccccccCCcc--cchHHHHHHHHhhhccCCcEEEecC-CcCCCCCCEEecCCChHHHHH
Confidence 88999999999999999988543 222221 124567777777 478888853 33 22 433 49999
Q ss_pred HHHhhhcC
Q 026370 232 ALRCAEIS 239 (239)
Q Consensus 232 AlrA~Ei~ 239 (239)
+++|.-++
T Consensus 225 ailAa~L~ 232 (475)
T PRK09181 225 SRIAVLTG 232 (475)
T ss_pred HHHHHHcC
Confidence 99987653
No 87
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=77.72 E-value=4.5 Score=32.71 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc--cccchHHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP--FFTTDTAAAL 233 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P--~fTTDt~AAl 233 (239)
-|+.+|...|+++|+...-.. -+++++ ..+.+.+++++..++|..||+|-= .+|-++++.+
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~-----~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~D~t~~a~~~~ 81 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYG-----IVPDDPDAIKEALRRALDRADLVITTGGTGPGPDDVTPEALAEA 81 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE-----EEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCeeeEEE-----EECCCHHHHHHHHHhhhccCCEEEEcCCcCcccCCcccHHHHHh
Confidence 688999999999887533221 123333 334455666888999999988732 6666665544
No 88
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=74.93 E-value=30 Score=27.78 Aligned_cols=107 Identities=16% Similarity=0.078 Sum_probs=46.8
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhh------hhh-hhhhhcCCCccc--hhHHHH
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF------RGA-SAAGNSGLDRSS--ADYIGM 163 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGnia------Rg~-~~Ar~~Gi~r~~--aD~IGM 163 (239)
++|=||+....+........++++.-++..++-. ...+|+.||...- .-. +.+.+.|++... .|.- -
T Consensus 4 ~ivVlG~~~~~~~~~~~~~~~R~~~a~~L~~~g~---~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~-s 79 (155)
T PF02698_consen 4 AIVVLGSALDPDGQLSPESRERLDEAARLYKAGY---APRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPK-S 79 (155)
T ss_dssp EEEEES-----------S-HHHHHHHHHHHH-HH---T--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----
T ss_pred EEEECCcCccccccccHhHHHHHHHHHHHHhcCC---CCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCC-C
Confidence 3445673322222222345677766666665422 2456777763221 111 333345776443 3333 4
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhC
Q 026370 164 LATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 210 (239)
Q Consensus 164 lAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~ 210 (239)
.-|..|+..+...++..+++..++ |+++|...++...+++
T Consensus 80 ~~T~ena~~~~~~~~~~~~~~iil-------VT~~~H~~Ra~~~~~~ 119 (155)
T PF02698_consen 80 TNTYENARFSKRLLKERGWQSIIL-------VTSPYHMRRARMIFRK 119 (155)
T ss_dssp -SHHHHHHHHHHHHHT-SSS-EEE-------E--CCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCeEEE-------ECCHHHHHHHHHHHHH
Confidence 458999999999999988865444 4566766666655443
No 89
>PLN02449 ferrochelatase
Probab=74.92 E-value=79 Score=31.85 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCC--CEEEEeCCCCCccccchHHH
Q 026370 166 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKG--RVVIFAAGTGNPFFTTDTAA 231 (239)
Q Consensus 166 T~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G--~IvVfagGtg~P~fTTDt~A 231 (239)
|+.-+..|+..|++.+.+..++-+... -.||+.+-+.+..++| +|+|+ ..-|.||.-|..
T Consensus 162 T~~Qa~~Lq~~L~~~~~~~~V~~aMRY---~~P~iedal~~l~~~G~~~iVvL---PLYPQyS~sTtg 223 (485)
T PLN02449 162 TDEQAEALAKALEAKNLPAKVYVGMRY---WHPFTEEAIDQIKADGITKLVVL---PLYPQFSISTSG 223 (485)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEhhhc---CCCCHHHHHHHHHhcCCCeEEEE---ECCcccccccHH
Confidence 445566778888766666666654443 3456444444444444 78888 888877655443
No 90
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=69.60 E-value=14 Score=29.72 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc--cccchHHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP--FFTTDTAAAL 233 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P--~fTTDt~AAl 233 (239)
-|+.+|...|++.|.+..... -+.++. ..+.+.+++++..++|..||+|.= .+|-++++.+
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~-----~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~~D~t~~ai~~~ 83 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAG-----VVPDDADSIRAALIEASREADLVLTTGGTGVGRRDVTPEALAEL 83 (133)
T ss_pred chHHHHHHHHHHCCCEEEEee-----ecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCcchHHHHHHh
Confidence 588899999999886543321 223333 234445566778999998877732 6666655443
No 91
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=69.18 E-value=5 Score=37.89 Aligned_cols=85 Identities=20% Similarity=0.297 Sum_probs=49.4
Q ss_pred EEEEECC---ChhhhhhhhhhhcCCCccchhHHHHHHH--HHHHHHHHHHHHhcCCCceEEeccccCcccccc-------
Q 026370 132 VAIVVGG---GNIFRGASAAGNSGLDRSSADYIGMLAT--VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY------- 199 (239)
Q Consensus 132 I~IV~GG---GniaRg~~~Ar~~Gi~r~~aD~IGMlAT--~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y------- 199 (239)
++++.|= |+.....++|+++|..=.-+|.|=+--- ..-|.-...-+ .++|-.++. +-.+.|.|
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~--~~vpHhliD---i~~p~e~ysa~~f~~ 79 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEEL--AGVPHHLID---IRDPTESYSAAEFQR 79 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHH--cCCCEEEec---ccCccccccHHHHHH
Confidence 4445443 9998888999888876666774422111 11112212211 235544442 22233444
Q ss_pred -hHHHHHHHHhCCCEEEEeCCCC
Q 026370 200 -IRRRAVRHLEKGRVVIFAAGTG 221 (239)
Q Consensus 200 -~~~ea~~~L~~G~IvVfagGtg 221 (239)
-.+.+.+...+|++||++||||
T Consensus 80 ~a~~~i~~i~~rgk~pIlVGGTg 102 (308)
T COG0324 80 DALAAIDDILARGKLPILVGGTG 102 (308)
T ss_pred HHHHHHHHHHhCCCCcEEEccHH
Confidence 3456677788999999999997
No 92
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=67.99 E-value=18 Score=26.90 Aligned_cols=53 Identities=25% Similarity=0.319 Sum_probs=28.4
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCC-hhhhh--hhhhhhcCCC
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-NIFRG--ASAAGNSGLD 154 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGG-niaRg--~~~Ar~~Gi~ 154 (239)
+||||. ||.-.. |.+.|....+.+.+-. -.++|||||- .=+.. .++|++.|++
T Consensus 4 ~rVli~-GgR~~~-------D~~~i~~~Ld~~~~~~---~~~~lvhGga~~GaD~iA~~wA~~~gv~ 59 (71)
T PF10686_consen 4 MRVLIT-GGRDWT-------DHELIWAALDKVHARH---PDMVLVHGGAPKGADRIAARWARERGVP 59 (71)
T ss_pred CEEEEE-ECCccc-------cHHHHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHHHCCCe
Confidence 467665 666443 4455555555444322 3578999986 32222 2455555543
No 93
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=67.96 E-value=23 Score=28.93 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCC
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL 153 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi 153 (239)
....+.|++|.+.|++++|+.| .+.......++++|+
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TG-D~~~~a~~~~~~lgi 166 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTG-DNESTASAIAKQLGI 166 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEES-SEHHHHHHHHHHTTS
T ss_pred hhhhhhhhhhhccCcceeeeec-ccccccccccccccc
Confidence 3466777777788999999984 555444555667777
No 94
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=64.90 E-value=26 Score=30.63 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=54.6
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchh---HHHHHHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD---YIGMLAT 166 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD---~IGMlAT 166 (239)
-+-|||.+.+-. .....++++.+.|+++.+.|..| |..+.|-..-+|.+| ...|+..+. .+|....
T Consensus 47 ik~vvL~~~s~g--------g~~~~~~el~~~i~~~~~~~kpV-ia~~~~~~sggy~la--saad~I~a~p~~~vg~iGv 115 (222)
T cd07018 47 IKGIVLDLDGLS--------GGLAKLEELRQALERFRASGKPV-IAYADGYSQGQYYLA--SAADEIYLNPSGSVELTGL 115 (222)
T ss_pred eEEEEEECCCCC--------CCHHHHHHHHHHHHHHHHhCCeE-EEEeCCCCchhhhhh--hhCCEEEECCCceEEeecc
Confidence 466888864432 23456677788888776555444 455555444456554 234555544 3444444
Q ss_pred HHHHHHHHHHHHhcCCCceEEec
Q 026370 167 VMNAIFLQATMESIGIPTRVQTA 189 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SA 189 (239)
.+.-..+...|+++|++..++.+
T Consensus 116 ~~~~~~~~~ll~klGv~~~~~~~ 138 (222)
T cd07018 116 SAETLFFKGLLDKLGVEVQVFRV 138 (222)
T ss_pred chhhhhHHHHHHHcCCcEEEEEE
Confidence 55666689999999999877743
No 95
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=63.65 E-value=31 Score=27.47 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc---cccchHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP---FFTTDTAA 231 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P---~fTTDt~A 231 (239)
-|+.+|...|++.|....... -++++. ..+.+.+.+++..++|..||+| + .+|-++++
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~-----~v~Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~ 80 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYV-----IVPDDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVA 80 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEE-----EeCCCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHH
Confidence 578888999999887643331 122332 2333444556678999988887 4 44444443
No 96
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=61.88 E-value=30 Score=28.27 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc--cccchHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP--FFTTDTAAA 232 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P--~fTTDt~AA 232 (239)
.|+.+|++.|+++|++..-+. -+.++. ..+.+.+++++-.++|..||+|.= .+|-++++.
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~-----~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~~D~t~~ai~~ 90 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLG-----IVPDDPEEIREILRKAVDEADVVLTTGGTGVGPRDVTPEALEE 90 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEe-----ecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCccHHHHHHH
Confidence 788899999999997644331 233333 133344455667899987766543 555555543
No 97
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=61.70 E-value=29 Score=29.49 Aligned_cols=62 Identities=27% Similarity=0.312 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc--cccchHHHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP--FFTTDTAAALR 234 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P--~fTTDt~AAlr 234 (239)
-|+.+|...|.+.|++..-+. -+.++. ..+.+.++++...++|+.||+|-= .+|-++++-..
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~-----~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVT-----VVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLTREAVAKAF 84 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEE-----EeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHHHHHHh
Confidence 588899999999897643321 233333 234445556667888886655432 45555555443
No 98
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=60.65 E-value=38 Score=27.90 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHh--CCCEEEEeCCCCCc--cccchHHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLE--KGRVVIFAAGTGNP--FFTTDTAAAL 233 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~--~G~IvVfagGtg~P--~fTTDt~AAl 233 (239)
-|+.+|++.|++.|++.... .-++++. ..+.+.++++ +..++|..||.+.= .+|-++++-+
T Consensus 20 ~n~~~l~~~l~~~G~~v~~~-----~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~ 86 (152)
T cd00886 20 RSGPALVELLEEAGHEVVAY-----EIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPL 86 (152)
T ss_pred chHHHHHHHHHHcCCeeeeE-----EEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHH
Confidence 68888899999999764333 1234444 1233444555 56888887665543 6777766654
No 99
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=60.58 E-value=19 Score=38.83 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCC
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL 153 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi 153 (239)
.+..+.|+++.+.|++++++.|- |..-....|++.|+
T Consensus 659 ~~~~~~I~~l~~agi~v~miTGD-~~~TA~~iA~~~gi 695 (1054)
T TIGR01657 659 PDTKEVIKELKRASIRTVMITGD-NPLTAVHVARECGI 695 (1054)
T ss_pred ccHHHHHHHHHHCCCeEEEECCC-CHHHHHHHHHHcCC
Confidence 35677888888999999888774 44444456777887
No 100
>PLN02199 shikimate kinase
Probab=60.04 E-value=40 Score=31.99 Aligned_cols=49 Identities=24% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEECC---ChhhhhhhhhhhcCCCccchhH
Q 026370 110 IDPKITMAIAREVASVTRLGIEVAIVVGG---GNIFRGASAAGNSGLDRSSADY 160 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~~~G~~I~IV~GG---GniaRg~~~Ar~~Gi~r~~aD~ 160 (239)
+|.+.|++.+++|+.... |.. ++++|- |+..-|..+|+.+|.+-.-+|.
T Consensus 84 ~de~~Lk~~a~~i~~~l~-~~~-I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 84 FDEDILKRKAEEVKPYLN-GRS-MYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCHHHHHHHHHHHHHHcC-CCE-EEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 787789999999998654 344 445564 9988888888778877666664
No 101
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=59.38 E-value=24 Score=32.43 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=77.5
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHH----------------HHHHhCCceEEEEECC---ChhhhhhhhhhhcCC
Q 026370 93 VLLKVSGEALAGDHTQNIDPKITMAIAREV----------------ASVTRLGIEVAIVVGG---GNIFRGASAAGNSGL 153 (239)
Q Consensus 93 IVIKLGGsaL~~d~~~gid~~~l~~iA~~I----------------~~l~~~G~~I~IV~GG---GniaRg~~~Ar~~Gi 153 (239)
-|+-|-|- ..+. +-+.+.++++++.. +.+.+.|++-+|+ |- =|.-+=.++++++|
T Consensus 49 HlVDLdgA-~~g~---~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rVii-Gt~av~~p~~v~~~~~~~g- 122 (241)
T COG0106 49 HLVDLDGA-KAGG---PRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVII-GTAAVKNPDLVKELCEEYG- 122 (241)
T ss_pred EEeecccc-ccCC---cccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEE-ecceecCHHHHHHHHHHcC-
Confidence 46787776 3322 13456666665543 4555566555543 32 11212235566677
Q ss_pred Cccc--hh-HHHHHHH-------HHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCC
Q 026370 154 DRSS--AD-YIGMLAT-------VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 154 ~r~~--aD-~IGMlAT-------~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~ 222 (239)
++.. .| +.|--|+ .+...-+..-|++.|+...+++.+..+..+...+++-..+..+.=.|||.+.||..
T Consensus 123 ~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~ 201 (241)
T COG0106 123 DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVS 201 (241)
T ss_pred CcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcC
Confidence 6654 22 3333343 34555666677888999999999999888888888888888777799999877653
No 102
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=59.16 E-value=6.5 Score=35.56 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCEEEEeCCCC
Q 026370 202 RRAVRHLEKGRVVIFAAGTG 221 (239)
Q Consensus 202 ~ea~~~L~~G~IvVfagGtg 221 (239)
+.+.+.+++|++||++||||
T Consensus 47 ~~i~~i~~rgk~PIlvGGTg 66 (253)
T PF01715_consen 47 EAIEDILARGKIPILVGGTG 66 (253)
T ss_dssp HHHHHHHHTT-EEEEEES-H
T ss_pred HHHHHHHhcCCeEEEECChH
Confidence 34566788999999999997
No 103
>PRK01215 competence damage-inducible protein A; Provisional
Probab=58.60 E-value=30 Score=31.66 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc--cccchHHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP--FFTTDTAAAL 233 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P--~fTTDt~AAl 233 (239)
-|+.+|...|...|++..... -++++. ..+.+.++++...++|+.||.|-= .+|-+++|..
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~-----~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t~dD~t~eaia~~ 87 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRIT-----VVMDDIEEIVSAFREAIDRADVVVSTGGLGPTYDDKTNEGFAKA 87 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-----EeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCChhhhHHHHHHHH
Confidence 588889999999998743332 233433 245556667777899987665432 5566655544
No 104
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=58.15 E-value=45 Score=30.04 Aligned_cols=40 Identities=10% Similarity=0.226 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.+.++.+.+.++. +..++++|+.|.|..| -|.++
T Consensus 39 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl 80 (277)
T PRK08258 39 NPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDV 80 (277)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCH
Confidence 3488999999999999875 4568999999988544 44444
No 105
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=57.61 E-value=24 Score=30.93 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=37.6
Q ss_pred HHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHH----H-----HHHH----HHHHHHHHHHHHhcCCC
Q 026370 122 VASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYI----G-----MLAT----VMNAIFLQATMESIGIP 183 (239)
Q Consensus 122 I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~I----G-----MlAT----~LNAllL~~aL~~~gi~ 183 (239)
++.+.+.|++++||.||-.++-.. .++.+|++...+-.. | +... .-=+..|...++.+|++
T Consensus 86 v~~lk~~G~~v~iiSgg~~~lv~~-ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~ 159 (212)
T COG0560 86 VAALKAAGAKVVIISGGFTFLVEP-IAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIP 159 (212)
T ss_pred HHHHHHCCCEEEEEcCChHHHHHH-HHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCC
Confidence 345557899999999997765544 456688876653211 3 1111 12345667777777776
No 106
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=56.71 E-value=32 Score=29.04 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEeccccCcccccc-h-HHHHHHHH--hCCCEEEEeCCCCCc--cccchHHHHH
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY-I-RRRAVRHL--EKGRVVIFAAGTGNP--FFTTDTAAAL 233 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y-~-~~ea~~~L--~~G~IvVfagGtg~P--~fTTDt~AAl 233 (239)
-.|+.+|...|++.|++...+ .-++++. . .+.+.+++ +...++|..||+|.= .+|-++++.+
T Consensus 21 d~n~~~l~~~L~~~G~~v~~~-----~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l 88 (163)
T TIGR02667 21 DTSGQYLVERLTEAGHRLADR-----AIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPL 88 (163)
T ss_pred CCcHHHHHHHHHHCCCeEEEE-----EEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHH
Confidence 368888899999988764333 2344444 1 22233333 246889987776643 6777766655
No 107
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=56.10 E-value=16 Score=37.05 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=64.6
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHH---H
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGML---A 165 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMl---A 165 (239)
+-|-|||.+.+.. +-....++++.+.|+++.+.|.. +++.|.+---.+|-+| ...|+..++..|.. .
T Consensus 93 ~IkgIvL~i~~~~-------g~~~~~~~ei~~ai~~fk~sgKp-VvA~~~~~~s~~YylA--s~AD~I~~~p~G~v~~~G 162 (584)
T TIGR00705 93 RIEGLVFDLSNFS-------GWDSPHLVEIGSALSEFKDSGKP-VYAYGTNYSQGQYYLA--SFADEIILNPMGSVDLHG 162 (584)
T ss_pred CceEEEEEccCCC-------CCCHHHHHHHHHHHHHHHhcCCe-EEEEEccccchhhhhh--hhCCEEEECCCceEEeec
Confidence 4677899975421 12345778899999998776655 4556653333345554 35788887755554 4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccccCcccccc
Q 026370 166 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY 199 (239)
Q Consensus 166 T~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y 199 (239)
-..+.+.++.+|+++|++..++..=......++|
T Consensus 163 ~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf 196 (584)
T TIGR00705 163 FYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPF 196 (584)
T ss_pred eecccccHHHHHHHcCCeEEEeeccccccccCcc
Confidence 4666777999999999988777433333334444
No 108
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=55.61 E-value=46 Score=35.58 Aligned_cols=106 Identities=23% Similarity=0.374 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHH---HHHHHHHHHhcCCCceEEecccc
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN---AIFLQATMESIGIPTRVQTAFRM 192 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LN---AllL~~aL~~~gi~a~v~SAi~i 192 (239)
.+..+.|+++.+.|.++.++.|= +..-....|++.|+.......+-|....++ ---+...++++.+-+++-
T Consensus 550 ~~v~~aI~~l~~AGI~v~MiTGD-~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvs----- 623 (917)
T COG0474 550 EDVKEAIEELREAGIKVWMITGD-HVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVS----- 623 (917)
T ss_pred ccHHHHHHHHHHCCCcEEEECCC-CHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcC-----
Confidence 45677888888999999988884 221222445667754433210111122222 113344455544444442
Q ss_pred CcccccchHHHHHHHHhC-CCEEEEeCCCCCccccchHHHHHHhhhc
Q 026370 193 SEVAEPYIRRRAVRHLEK-GRVVIFAAGTGNPFFTTDTAAALRCAEI 238 (239)
Q Consensus 193 ~~i~e~y~~~ea~~~L~~-G~IvVfagGtg~P~fTTDt~AAlrA~Ei 238 (239)
|..-.++.++|.+ |++|-|.|.|.| | +.||+++-+
T Consensus 624 -----P~qK~~IV~~lq~~g~vVamtGDGvN-----D-apALk~ADV 659 (917)
T COG0474 624 -----PEQKARIVEALQKSGHVVAMTGDGVN-----D-APALKAADV 659 (917)
T ss_pred -----HHHHHHHHHHHHhCCCEEEEeCCCch-----h-HHHHHhcCc
Confidence 2233556666654 788888777765 4 445555444
No 109
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=55.26 E-value=57 Score=30.91 Aligned_cols=71 Identities=7% Similarity=0.018 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEeccccC--cccccchHHHHHHHHh----CCCEEEEeCCCCCc-ccc-------chHHHH
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRMS--EVAEPYIRRRAVRHLE----KGRVVIFAAGTGNP-FFT-------TDTAAA 232 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i~--~i~e~y~~~ea~~~L~----~G~IvVfagGtg~P-~fT-------TDt~AA 232 (239)
++-+.++..+|+..|+++..+...... .... ..+++.+.+. .+.|||+.|=++++ +-+ +|+.|+
T Consensus 142 ~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t--~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGRGGSDyTAs 219 (304)
T cd04248 142 AHSAFNTALLLQNRGVNARFVDLSGWRDSGDMT--LDERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDRGYSEMTFS 219 (304)
T ss_pred HHHHHHHHHHHHHCCCCeEEECcccccccCCCC--cHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCCCcHHHHHH
Confidence 677788888888889998875432221 1111 1244445444 46788873211111 222 588888
Q ss_pred HHhhhcC
Q 026370 233 LRCAEIS 239 (239)
Q Consensus 233 lrA~Ei~ 239 (239)
+.|..++
T Consensus 220 ~iAa~l~ 226 (304)
T cd04248 220 RIAVLTG 226 (304)
T ss_pred HHHHHcC
Confidence 8887653
No 110
>PRK03673 hypothetical protein; Provisional
Probab=55.08 E-value=33 Score=33.38 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc--cccchHHHHHHh
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP--FFTTDTAAALRC 235 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P--~fTTDt~AAlrA 235 (239)
-|+..|...|.+.|++..-.. -+.|+. ..+.+.+++++..++|..||.|-= .+|-+++|....
T Consensus 21 tN~~~la~~L~~~G~~v~~~~-----~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~dD~t~~avA~a~g 87 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRN-----TVGDNLDALVAILRERSQHADVLIVNGGLGPTSDDLSALAAATAAG 87 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEE-----EcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCcccHHHHHHHHcC
Confidence 599999999999998743332 233333 234445566778899986665533 677777776543
No 111
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=53.72 E-value=79 Score=32.95 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc--hhHH--HHHHHHHHHHHHHHHHHhcCCCceEEeccc
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS--ADYI--GMLATVMNAIFLQATMESIGIPTRVQTAFR 191 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~--aD~I--GMlAT~LNAllL~~aL~~~gi~a~v~SAi~ 191 (239)
.+..+.|+++.+.|++++++.|- +.......|++.|+.+.. .+.+ |-.--.++.--+...+++..+-+++.
T Consensus 445 ~~a~~aI~~l~~aGI~v~miTGD-~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~---- 519 (755)
T TIGR01647 445 HDTKETIERARHLGVEVKMVTGD-HLAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVF---- 519 (755)
T ss_pred hhHHHHHHHHHHCCCeEEEECCC-CHHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecC----
Confidence 45667778888889998888774 332334567888986531 2211 00000112223444455433323222
Q ss_pred cCcccccchHHHHHHHH-hCCCEEEEeCCCCC
Q 026370 192 MSEVAEPYIRRRAVRHL-EKGRVVIFAAGTGN 222 (239)
Q Consensus 192 i~~i~e~y~~~ea~~~L-~~G~IvVfagGtg~ 222 (239)
|+ .-.++.+.+ ++|++|-|.|.|-|
T Consensus 520 ----Pe--~K~~iV~~lq~~G~~VamvGDGvN 545 (755)
T TIGR01647 520 ----PE--HKYEIVEILQKRGHLVGMTGDGVN 545 (755)
T ss_pred ----HH--HHHHHHHHHHhcCCEEEEEcCCcc
Confidence 11 223555555 57889888776654
No 112
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=53.50 E-value=66 Score=34.14 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r 155 (239)
.+..+.|+++.+.|++++++.|- +..-....|++.|+..
T Consensus 518 ~~~~~aI~~l~~aGI~vvmiTGD-~~~tA~aIA~~lGI~~ 556 (867)
T TIGR01524 518 ESTKEAIAALFKNGINVKVLTGD-NEIVTARICQEVGIDA 556 (867)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCC-CHHHHHHHHHHcCCCC
Confidence 45667778888899999988884 3333345678889863
No 113
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=53.35 E-value=21 Score=30.44 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccchhHHHHHHH
Q 026370 119 AREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLAT 166 (239)
Q Consensus 119 A~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD~IGMlAT 166 (239)
.+.+..+.+.|.+-++|++||++-.+- +.-++.|+++...-...+..+
T Consensus 81 ~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~ 129 (143)
T COG2185 81 PGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEA 129 (143)
T ss_pred HHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHH
Confidence 333444456677777889999998884 444678888887654444433
No 114
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=52.81 E-value=66 Score=34.38 Aligned_cols=95 Identities=24% Similarity=0.300 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcc
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV 195 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i 195 (239)
.+..+.|+++.+.|++++++.|= |..-....|++.|++.... .-|-.--.|+.--+...+++..+-+++.
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD-~~~tA~~IA~~lGI~~~~v-~~G~el~~l~~~el~~~~~~~~VfAr~s-------- 622 (902)
T PRK10517 553 ETTAPALKALKASGVTVKILTGD-SELVAAKVCHEVGLDAGEV-LIGSDIETLSDDELANLAERTTLFARLT-------- 622 (902)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCC-CHHHHHHHHHHcCCCccCc-eeHHHHHhCCHHHHHHHHhhCcEEEEcC--------
Confidence 45667778888899998888873 3333445678899863210 0111111222333444444433222221
Q ss_pred cccchHHHHHHHH-hCCCEEEEeCCCCC
Q 026370 196 AEPYIRRRAVRHL-EKGRVVIFAAGTGN 222 (239)
Q Consensus 196 ~e~y~~~ea~~~L-~~G~IvVfagGtg~ 222 (239)
|..-.++.+.| ++|.+|-|.|.|.|
T Consensus 623 --Pe~K~~IV~~Lq~~G~vVam~GDGvN 648 (902)
T PRK10517 623 --PMHKERIVTLLKREGHVVGFMGDGIN 648 (902)
T ss_pred --HHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 22234566666 46899988777765
No 115
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=52.06 E-value=48 Score=29.41 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGnia 142 (239)
..++.+.++++.+.+.++.+...+++|+.|.|..|
T Consensus 26 Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F 60 (262)
T PRK08140 26 NSFTREMHRELREALDQVEDDGARALLLTGAGRGF 60 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCc
Confidence 34889999999999998765568999999998554
No 116
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=51.99 E-value=23 Score=32.88 Aligned_cols=71 Identities=21% Similarity=0.256 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEe-CCCCCc------cccchHHHHHHhh
Q 026370 166 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFA-AGTGNP------FFTTDTAAALRCA 236 (239)
Q Consensus 166 T~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfa-gGtg~P------~fTTDt~AAlrA~ 236 (239)
|-+-++-.....++.|--..+++++.-+..-..|...-.+..-+.=+|||.| ||.|+| |.-+++-|||.|.
T Consensus 153 t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAs 230 (256)
T COG0107 153 TGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAAS 230 (256)
T ss_pred CCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhh
Confidence 4455566666677778777888877778888899888777777888999988 899999 4577788888775
No 117
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=51.95 E-value=74 Score=34.01 Aligned_cols=95 Identities=21% Similarity=0.328 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcc
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV 195 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i 195 (239)
.+..+.|+++.+.|++++++.|= |.......|++.|++.... .-|-.--.|+---+...+++..+-+++.
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD-~~~tA~aIA~~lGI~~~~v-i~G~el~~~~~~el~~~v~~~~VfAr~s-------- 622 (903)
T PRK15122 553 ESAAPAIAALRENGVAVKVLTGD-NPIVTAKICREVGLEPGEP-LLGTEIEAMDDAALAREVEERTVFAKLT-------- 622 (903)
T ss_pred HHHHHHHHHHHHCCCeEEEECCC-CHHHHHHHHHHcCCCCCCc-cchHhhhhCCHHHHHHHhhhCCEEEEeC--------
Confidence 45666777888899998888774 3333445678889863210 0111111222233444444433333332
Q ss_pred cccchHHHHHHHH-hCCCEEEEeCCCCC
Q 026370 196 AEPYIRRRAVRHL-EKGRVVIFAAGTGN 222 (239)
Q Consensus 196 ~e~y~~~ea~~~L-~~G~IvVfagGtg~ 222 (239)
|..-.++.+.| ++|++|-|.|.|.|
T Consensus 623 --Pe~K~~iV~~Lq~~G~vVamtGDGvN 648 (903)
T PRK15122 623 --PLQKSRVLKALQANGHTVGFLGDGIN 648 (903)
T ss_pred --HHHHHHHHHHHHhCCCEEEEECCCch
Confidence 12224555665 56889988777655
No 118
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.71 E-value=1.1e+02 Score=26.52 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=23.0
Q ss_pred HHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCC
Q 026370 175 ATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 175 ~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~ 222 (239)
..++..|+...+++.+....-.+..+++.+.+..+.-.+||+++|+-.
T Consensus 156 ~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~ 203 (241)
T PRK13585 156 KRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVT 203 (241)
T ss_pred HHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCC
Confidence 334444555555444332222233344555555555567777655543
No 119
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=51.47 E-value=71 Score=34.11 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r 155 (239)
.+..+.|+++.+.|++++++.|= +..-....|++.|+.+
T Consensus 582 ~~~~~aI~~l~~aGI~v~miTGD-~~~tA~~iA~~~GI~~ 620 (941)
T TIGR01517 582 PGVREAVQECQRAGITVRMVTGD-NIDTAKAIARNCGILT 620 (941)
T ss_pred hhHHHHHHHHHHCCCEEEEECCC-ChHHHHHHHHHcCCCC
Confidence 35677788888889999888875 3333345677888853
No 120
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=51.21 E-value=1.2e+02 Score=27.90 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=57.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC----Chhhhhh--hhhhhc-CCCccchhHHHHHHHHHHH-HHHHHHH
Q 026370 106 HTQNIDPKITMAIAREVASVTRLGIEVAIVVGG----GNIFRGA--SAAGNS-GLDRSSADYIGMLATVMNA-IFLQATM 177 (239)
Q Consensus 106 ~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG----GniaRg~--~~Ar~~-Gi~r~~aD~IGMlAT~LNA-llL~~aL 177 (239)
+.|.++.+.++.+.+.|+.+.+.|.+ .||.|- |++=+.. ++-+.. +++= -=|..+..+. +- ..|+. |
T Consensus 63 gdF~Ys~~E~~~M~~di~~~~~~Gad-GvV~G~L~~dg~vD~~~~~~Li~~a~~~~v--TFHRAfD~~~-d~~~al~~-l 137 (248)
T PRK11572 63 GDFCYSDGEFAAMLEDIATVRELGFP-GLVTGVLDVDGHVDMPRMRKIMAAAGPLAV--TFHRAFDMCA-NPLNALKQ-L 137 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCC-EEEEeeECCCCCcCHHHHHHHHHHhcCCce--EEechhhccC-CHHHHHHH-H
Confidence 44668888999999999999888876 788886 6553332 111111 1111 1122333331 11 12333 4
Q ss_pred HhcCCCceEEeccccCcccccchHHHHHHHHh--CCCEEEEeCCCCCc
Q 026370 178 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE--KGRVVIFAAGTGNP 223 (239)
Q Consensus 178 ~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~--~G~IvVfagGtg~P 223 (239)
.++|+. +++++=..+...+.. +.+.+..+ .+++ |++|||-+|
T Consensus 138 ~~lG~~-rILTSGg~~~a~~g~--~~L~~lv~~a~~~~-Im~GgGV~~ 181 (248)
T PRK11572 138 ADLGVA-RILTSGQQQDAEQGL--SLIMELIAASDGPI-IMAGAGVRL 181 (248)
T ss_pred HHcCCC-EEECCCCCCCHHHHH--HHHHHHHHhcCCCE-EEeCCCCCH
Confidence 455875 444332222333333 33444333 4555 888888766
No 121
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=49.88 E-value=55 Score=29.20 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=38.2
Q ss_pred ccEEEEEecc-cccc----C-CCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 90 WQRVLLKVSG-EALA----G-DHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 90 ~krIVIKLGG-saL~----~-d~~~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
|..|.+..-| .++. . ++...++.+.++++.+.+.++.+ ...+++|+.|.|..| -|.++
T Consensus 4 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl 69 (272)
T PRK06210 4 YDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADM 69 (272)
T ss_pred cceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCH
Confidence 4556666555 3322 2 22234899999999999998863 457899999987554 34443
No 122
>PLN02840 tRNA dimethylallyltransferase
Probab=49.56 E-value=14 Score=36.40 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCEEEEeCCCC
Q 026370 202 RRAVRHLEKGRVVIFAAGTG 221 (239)
Q Consensus 202 ~ea~~~L~~G~IvVfagGtg 221 (239)
+.+.+.+++|++||++||||
T Consensus 101 ~~I~~i~~rgkiPIvVGGTG 120 (421)
T PLN02840 101 RATQDILNRGRVPIVAGGTG 120 (421)
T ss_pred HHHHHHHhcCCCEEEEcCcc
Confidence 44556677899999999997
No 123
>PRK03670 competence damage-inducible protein A; Provisional
Probab=49.24 E-value=56 Score=29.78 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhC-CCEEEEeCCCCCc--cccchHHHHHHh
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEK-GRVVIFAAGTGNP--FFTTDTAAALRC 235 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~-G~IvVfagGtg~P--~fTTDt~AAlrA 235 (239)
-|+.+|...|...|++..-.. -+.++. ..+.+.+++.+ ..+||+.||.|-= .+|-+++|....
T Consensus 20 tN~~~la~~L~~~G~~v~~~~-----iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD~T~eava~a~g 87 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRIT-----TVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDDVTMLAVAEALG 87 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEE-----EcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCCchHHHHHHHhC
Confidence 688899999999998743321 233333 12333344554 4788886554322 566666665543
No 124
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=49.01 E-value=14 Score=34.47 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCEEEEeCCCCC
Q 026370 201 RRRAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 201 ~~ea~~~L~~G~IvVfagGtg~ 222 (239)
.+.+.+.+++|++||++||||-
T Consensus 78 ~~~i~~~~~~g~~pi~vGGTg~ 99 (287)
T TIGR00174 78 LNAIADITARGKIPLLVGGTGL 99 (287)
T ss_pred HHHHHHHHhCCCCEEEEcCcHH
Confidence 3455667788999999999973
No 125
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=48.90 E-value=59 Score=28.79 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=36.7
Q ss_pred ccEEEEEecccccc----C-CCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh
Q 026370 90 WQRVLLKVSGEALA----G-DHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF 142 (239)
Q Consensus 90 ~krIVIKLGGsaL~----~-d~~~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia 142 (239)
|+.+++...|.+.. + ++...++.+.++++.+.+.++.+ ...+++|+.|.|+.|
T Consensus 4 ~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F 62 (249)
T PRK07110 4 KVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYF 62 (249)
T ss_pred CceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCe
Confidence 44555665554432 2 23334899999999999998864 457899999988654
No 126
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=48.20 E-value=62 Score=28.79 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-C-ceEEEEECCChh-hhhhhh
Q 026370 108 QNIDPKITMAIAREVASVTRL-G-IEVAIVVGGGNI-FRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~~-G-~~I~IV~GGGni-aRg~~~ 147 (239)
..++.+.++++.+.+.++.+. . ++++|+.|.|.. --|.++
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl 68 (266)
T PRK05981 26 NAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANL 68 (266)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCH
Confidence 348899999999999988642 3 899999998854 345444
No 127
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=47.79 E-value=76 Score=28.45 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCC-h-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
..++.+.++++.+.+.++.+ ..++++|+.|.| + +-=|.++
T Consensus 33 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl 75 (269)
T PRK06127 33 NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADI 75 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCH
Confidence 34899999999999998864 458999999976 4 4445544
No 128
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=47.68 E-value=1.3e+02 Score=27.04 Aligned_cols=114 Identities=21% Similarity=0.244 Sum_probs=64.3
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCc-----eEEEEECCChhhhhh-hhhhhc--CCCccchhH-
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-----EVAIVVGGGNIFRGA-SAAGNS--GLDRSSADY- 160 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~-----~I~IV~GGGniaRg~-~~Ar~~--Gi~r~~aD~- 160 (239)
...+-|-||-.- ...-|.+..+-+|+.|.++.+... +.+|-+|||-++... +.+.+- .+.....+|
T Consensus 90 ~Ps~FvEIGSte-----~eW~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~GG~HYapr~t~~~l~~~~~~GHi~~ky~ 164 (213)
T PF04414_consen 90 VPSVFVEIGSTE-----EEWNDPDAAEAVARAVLEVLESDEKAECCPVAIGFGGGHYAPRFTKLALETEYAFGHIIPKYA 164 (213)
T ss_dssp SBEEEEEEEESH-----HHHT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE-S-TT-HHHHHHHHHCSEEEEEEE-GGG
T ss_pred CCcEEEEeCCCH-----HHhCChHHHHHHHHHHHHHhcccccccccceeEEecCcccchhhhhhhhcCCeEEEeeccCcc
Confidence 345556766441 123478899999999998876333 889999999999876 666443 233333332
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEE
Q 026370 161 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIF 216 (239)
Q Consensus 161 IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVf 216 (239)
+. .++.-+|+.++++.+....++. .+=...-.++++++.+++--|.|.
T Consensus 165 l~----~l~~~~l~~a~~~s~~~~a~id----~K~l~~~~r~~i~~~l~~~gi~v~ 212 (213)
T PF04414_consen 165 LD----ELDEDVLRQAIEKSGADVAIID----WKSLKSEDRRRIEELLEELGIEVI 212 (213)
T ss_dssp GG----G--HHHHHHHHCHCT-SEEEEE----TTTS-HHHHHHHHHHHHHHT-EEE
T ss_pred hh----hcCHHHHHHHHHhCCCcEEEEe----cCCCCHHHHHHHHHHHHHcCCeee
Confidence 21 2446778888888755443331 122223346788888887666653
No 129
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=47.54 E-value=15 Score=34.40 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=14.5
Q ss_pred HHHHHhCCCEEEEeCCCCC
Q 026370 204 AVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 204 a~~~L~~G~IvVfagGtg~ 222 (239)
+.+...+|++||++||||-
T Consensus 85 i~~i~~~gk~PilvGGTgl 103 (300)
T PRK14729 85 IKELRQQKKIPIFVGGSAF 103 (300)
T ss_pred HHHHHHCCCCEEEEeCchH
Confidence 3344568999999999983
No 130
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=46.14 E-value=2.1e+02 Score=28.95 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcc-cccchHHHHHHH------------H-hCCCEEEEeC--CC
Q 026370 157 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-AEPYIRRRAVRH------------L-EKGRVVIFAA--GT 220 (239)
Q Consensus 157 ~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i-~e~y~~~ea~~~------------L-~~G~IvVfag--Gt 220 (239)
+.|++-=..-.|-.+++.+.|++.|++++-+.++.+.-+ .++++.+.+.++ + ....|||+-| |-
T Consensus 191 TrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk 270 (559)
T KOG0456|consen 191 TRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLGK 270 (559)
T ss_pred hhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeecccc
Confidence 355444445578888999999999999999998888433 333333322221 2 2356788742 22
Q ss_pred CCc--c------ccchHHHHHHhhhc
Q 026370 221 GNP--F------FTTDTAAALRCAEI 238 (239)
Q Consensus 221 g~P--~------fTTDt~AAlrA~Ei 238 (239)
|-| - =-||-.|++.|.-+
T Consensus 271 ~~~tg~lt~lGRG~sDl~At~i~~al 296 (559)
T KOG0456|consen 271 GWPTGALTTLGRGGSDLTATTIGKAL 296 (559)
T ss_pred CccccceecccCCchhhHHHHHHHHc
Confidence 233 0 12688888887654
No 131
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=45.88 E-value=75 Score=28.40 Aligned_cols=40 Identities=10% Similarity=0.227 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCCh-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGN-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGn-iaRg~~~ 147 (239)
..++.+.++++.+.+.++.+ ..++++|+.|.|. +--|.++
T Consensus 28 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl 69 (272)
T PRK06142 28 NAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDL 69 (272)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCH
Confidence 34999999999999998863 4589999999885 4455544
No 132
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=45.83 E-value=59 Score=28.92 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCC-h-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
..++.+.+.++.+.+.++. +...+++|+.|.| + +--|.++
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl 66 (256)
T TIGR03210 24 NAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQ 66 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCh
Confidence 3488999999999998875 4568999999977 4 5455544
No 133
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=45.77 E-value=38 Score=29.28 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=29.3
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChh
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGni 141 (239)
-|++.+=|+.+.. .++|+.|.++...|..|++++||=+=
T Consensus 70 vi~Ld~~Gk~~sS-----------e~fA~~l~~~~~~G~~i~f~IGG~~G 108 (155)
T COG1576 70 VVLLDIRGKALSS-----------EEFADFLERLRDDGRDISFLIGGADG 108 (155)
T ss_pred EEEEecCCCcCCh-----------HHHHHHHHHHHhcCCeEEEEEeCccc
Confidence 4566766776543 57888898888888899999998443
No 134
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=45.61 E-value=71 Score=28.36 Aligned_cols=40 Identities=13% Similarity=0.363 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++. +..++++|+.|.|..| -|.++
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl 67 (262)
T PRK05995 26 NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADL 67 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCH
Confidence 3489999999999999875 3568999999988543 34443
No 135
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=45.46 E-value=95 Score=28.67 Aligned_cols=74 Identities=24% Similarity=0.306 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCceEEEEECC--ChhhhhhhhhhhcCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccc
Q 026370 114 ITMAIAREVASVTRLGIEVAIVVGG--GNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR 191 (239)
Q Consensus 114 ~l~~iA~~I~~l~~~G~~I~IV~GG--GniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~ 191 (239)
.+.--++.++....+ -+|+++-|| |.+- |+--+||..+| +-++...++..|+...=+.
T Consensus 123 i~~laaeflrr~~~e-p~VaVlSgGRlgDlG------R~~~VDrtlad----------gEfva~~~k~~g~~v~H~~--- 182 (256)
T COG4002 123 IIELAAEFLRRTGIE-PKVAVLSGGRLGDLG------RNKEVDRTLAD----------GEFVAEHFKGNGVDVIHYG--- 182 (256)
T ss_pred HHHHHHHHHHHhCCC-cceEEecCCcchhcc------Ccchhhhhhhc----------hHHHHHHHhccCceeEEee---
Confidence 334445555554322 467777776 5543 33335676666 5566777777777644331
Q ss_pred cCcccccchHHHHHHHHhCCCEEEEe
Q 026370 192 MSEVAEPYIRRRAVRHLEKGRVVIFA 217 (239)
Q Consensus 192 i~~i~e~y~~~ea~~~L~~G~IvVfa 217 (239)
| -+.++++.|.|+|+.
T Consensus 183 ---I-------LIEealkdgnvIia~ 198 (256)
T COG4002 183 ---I-------LIEEALKDGNVIIAV 198 (256)
T ss_pred ---e-------EHHHHhhcCCEEEEe
Confidence 1 277889999888876
No 136
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=45.30 E-value=43 Score=29.62 Aligned_cols=35 Identities=11% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGnia 142 (239)
..++.+.+.++.+.+.++.+...+++|+.|.|..|
T Consensus 22 Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F 56 (243)
T PRK07854 22 NALNAELCEELREAVRKAVDESARAIVLTGQGTVF 56 (243)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCce
Confidence 34889999999999998776678999999988654
No 137
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=44.73 E-value=1.5e+02 Score=26.28 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEEECC----Chhhhhh-----hhhhhc--CCCccchhHHHHHHHHHHHHHHHH
Q 026370 107 TQNIDPKITMAIAREVASVTRLGIEVAIVVGG----GNIFRGA-----SAAGNS--GLDRSSADYIGMLATVMNAIFLQA 175 (239)
Q Consensus 107 ~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG----GniaRg~-----~~Ar~~--Gi~r~~aD~IGMlAT~LNAllL~~ 175 (239)
.|-++.+.++.+.+.|+.+.+.|.+ .+|.|- |.+=+.. ++|+.+ -+.|.. ..+.--...|..
T Consensus 63 dF~Ys~~E~~~M~~dI~~~~~~Gad-G~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAf------D~~~d~~~al~~ 135 (201)
T PF03932_consen 63 DFVYSDEEIEIMKEDIRMLRELGAD-GFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAF------DEVPDPEEALEQ 135 (201)
T ss_dssp -S---HHHHHHHHHHHHHHHHTT-S-EEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGG------GGSSTHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHcCCC-eeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcH------HHhCCHHHHHHH
Confidence 3557888999999999999888876 778886 5543332 222211 122222 111001112343
Q ss_pred HHHhcCCCceEEeccccCcccccc-hHHHHHHHHhCCCEEEEeCCCCCc
Q 026370 176 TMESIGIPTRVQTAFRMSEVAEPY-IRRRAVRHLEKGRVVIFAAGTGNP 223 (239)
Q Consensus 176 aL~~~gi~a~v~SAi~i~~i~e~y-~~~ea~~~L~~G~IvVfagGtg~P 223 (239)
|.++|+. +|+++=.-+...+.. .+++.. ...+++|-|++|||-+|
T Consensus 136 -L~~lG~~-rVLTSGg~~~a~~g~~~L~~lv-~~a~~~i~Im~GgGv~~ 181 (201)
T PF03932_consen 136 -LIELGFD-RVLTSGGAPTALEGIENLKELV-EQAKGRIEIMPGGGVRA 181 (201)
T ss_dssp -HHHHT-S-EEEESTTSSSTTTCHHHHHHHH-HHHTTSSEEEEESS--T
T ss_pred -HHhcCCC-EEECCCCCCCHHHHHHHHHHHH-HHcCCCcEEEecCCCCH
Confidence 3344775 555443334444544 223322 33558899998887766
No 138
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=44.45 E-value=19 Score=35.44 Aligned_cols=72 Identities=11% Similarity=0.204 Sum_probs=37.0
Q ss_pred hhcCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc-CcccccchHHHHHHHHhCCCEEEEeCCCCCc
Q 026370 149 GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM-SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNP 223 (239)
Q Consensus 149 r~~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i-~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P 223 (239)
+++|++......+|+..|..-=..|...|+. .++.++...+.- .+..+. ..++.++.|...+++|+ +|+..|
T Consensus 275 ~~fGiP~~~~~~~Gi~~T~~~Lr~ia~~~g~-~i~~~~e~~I~~e~~~~~~-~ld~~~~~L~GKrv~i~-~g~~~~ 347 (466)
T TIGR01282 275 EKYGIPWMEYNFFGPTKIAESLRKIAEFFDD-EIKEKAEEVIAKYQPAVDA-VIAKYRPRLEGKTVMLY-VGGLRP 347 (466)
T ss_pred HHhCCceEeCCCCCHHHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCEEEEE-CCCCcH
Confidence 4578887766678888886555555555543 233222100000 001111 13345667777778887 444344
No 139
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=44.16 E-value=16 Score=33.39 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=21.6
Q ss_pred EEEECCChhhhhhhhhhhcCCCccchh
Q 026370 133 AIVVGGGNIFRGASAAGNSGLDRSSAD 159 (239)
Q Consensus 133 ~IV~GGGniaRg~~~Ar~~Gi~r~~aD 159 (239)
+|.|||||.|-=-+.-+++|++....+
T Consensus 87 ~IyVgGGNTF~LL~~lke~gld~iIr~ 113 (224)
T COG3340 87 IIYVGGGNTFNLLQELKETGLDDIIRE 113 (224)
T ss_pred EEEECCchHHHHHHHHHHhCcHHHHHH
Confidence 567799999887655588999888766
No 140
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=44.00 E-value=80 Score=28.41 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=39.7
Q ss_pred ccEEEEEecccccc----C-CCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEECCC-h-hhhhhhh
Q 026370 90 WQRVLLKVSGEALA----G-DHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 90 ~krIVIKLGGsaL~----~-d~~~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
|+.+.+...|.+.. . ++...++.+.++++.+.+.++.+ ...+++|+.|.| . +--|.++
T Consensus 12 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl 77 (273)
T PRK07396 12 YEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQ 77 (273)
T ss_pred CcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcCh
Confidence 55666666665432 2 22234899999999999998763 458899999987 3 5555554
No 141
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=43.77 E-value=82 Score=27.93 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCCh-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGN-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGn-iaRg~~~ 147 (239)
..++.+.++++.+.+.++. +...+++|+.|.|. +--|.++
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl 67 (257)
T PRK05862 26 NALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADI 67 (257)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcCh
Confidence 3488999999999999876 34589999999874 4445444
No 142
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=43.64 E-value=80 Score=27.99 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=37.2
Q ss_pred ccEEEEEecccccc----C-CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEECCC-h-hhhhhhh
Q 026370 90 WQRVLLKVSGEALA----G-DHTQNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 90 ~krIVIKLGGsaL~----~-d~~~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
|+.+.+..-|.+.. . ++...++.+.++++.+.+.++. +...+++|+.|.| . +--|.++
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl 68 (260)
T PRK05809 3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADI 68 (260)
T ss_pred cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcCh
Confidence 44555554444332 2 2223488999999999999875 3457899999976 4 4445544
No 143
>PRK10949 protease 4; Provisional
Probab=43.02 E-value=20 Score=36.79 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=63.4
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHH---H
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGML---A 165 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMl---A 165 (239)
+-+-|||++.+- . +-....++++.+.|.++.+.|..| +.+|..---.+|-+| ...|+..++..|.. .
T Consensus 112 rIkgivL~i~s~--g-----G~~~a~~~eI~~ai~~fk~sGKpV-vA~~~~~~s~~YyLA--SaAD~I~l~P~G~v~~~G 181 (618)
T PRK10949 112 NITGIVLDLKNF--A-----GADQPSMQYIGKALREFRDSGKPV-YAVGDSYSQGQYYLA--SFANKIYLSPQGVVDLHG 181 (618)
T ss_pred CceEEEEEeCCC--C-----CccHHHHHHHHHHHHHHHHhCCeE-EEEecCccchhhhhh--hhCCEEEECCCceEEEee
Confidence 356789887432 1 123456788999999988777564 456543333356554 35678877755543 3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeccccCcccccc
Q 026370 166 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY 199 (239)
Q Consensus 166 T~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y 199 (239)
-..+.+.++.+|+++|++..++..=......|+|
T Consensus 182 ~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf 215 (618)
T PRK10949 182 FATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPF 215 (618)
T ss_pred eecchhhHHHHHHHcCCeEEEEEecCCCCCCCcc
Confidence 3556688899999999998877332333334444
No 144
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=42.72 E-value=83 Score=26.42 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchh--HHHHHHHHHHHHHHHHHHHh
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD--YIGMLATVMNAIFLQATMES 179 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD--~IGMlAT~LNAllL~~aL~~ 179 (239)
.++-..|+++.++|++ +|+|||.. .++|+++|++-..-+ +-.+.-+...|+-+..+...
T Consensus 112 ~e~~~~i~~~~~~G~~--viVGg~~~---~~~A~~~gl~~v~i~sg~esi~~Al~eA~~i~~~~~~ 172 (176)
T PF06506_consen 112 EEIEAAIKQAKAEGVD--VIVGGGVV---CRLARKLGLPGVLIESGEESIRRALEEALRIARARRR 172 (176)
T ss_dssp HHHHHHHHHHHHTT----EEEESHHH---HHHHHHTTSEEEESS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCc--EEECCHHH---HHHHHHcCCcEEEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777755 56788765 467788999877644 66777777777777665543
No 145
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=42.52 E-value=25 Score=32.47 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEECC-Chhhhhh---hhhhhcCC
Q 026370 113 KITMAIAREVASVTRLGIEVAIVVGG-GNIFRGA---SAAGNSGL 153 (239)
Q Consensus 113 ~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg~---~~Ar~~Gi 153 (239)
|...++.++|+.+.+. +.++|+.|| |....-. -.|+.+|.
T Consensus 45 D~~~~I~~~l~~a~~r-~D~vI~tGGLGPT~DDiT~e~vAka~g~ 88 (255)
T COG1058 45 DNPDRIVEALREASER-ADVVITTGGLGPTHDDLTAEAVAKALGR 88 (255)
T ss_pred CCHHHHHHHHHHHHhC-CCEEEECCCcCCCccHhHHHHHHHHhCC
Confidence 4567888999988888 999999999 9887774 33344553
No 146
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.91 E-value=17 Score=35.11 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=19.4
Q ss_pred hhcCCCccchhHHHHHHHHHHHHHHHHHHH
Q 026370 149 GNSGLDRSSADYIGMLATVMNAIFLQATME 178 (239)
Q Consensus 149 r~~Gi~r~~aD~IGMlAT~LNAllL~~aL~ 178 (239)
+++|++-...+.+|+..|..--..|...|+
T Consensus 240 ~~fGiP~~~~~p~Gi~~t~~~l~~ia~~~g 269 (421)
T cd01976 240 EKYGIPWMEYNFFGPTKIAESLRKIAAYFD 269 (421)
T ss_pred HHhCCcEEecccCCHHHHHHHHHHHHHHhC
Confidence 456777766667888888655555555553
No 147
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=41.24 E-value=53 Score=26.09 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=23.0
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEEC
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~G 137 (239)
|||+|-++|+.-. .+..+.|+++.+.|++|-+|.=
T Consensus 1 k~i~l~vtGs~~~------------~~~~~~l~~L~~~g~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGSIAA------------YKAPDLLRRLKRAGWEVRVVLS 35 (129)
T ss_dssp -EEEEEE-SSGGG------------GGHHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEEEECHHHH------------HHHHHHHHHHhhCCCEEEEEEC
Confidence 6899999998432 2256666777777888876653
No 148
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.92 E-value=52 Score=26.01 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhCCc-eEEEEECCChhhhhhhhhhhcCCCccc
Q 026370 112 PKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSS 157 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~-~I~IV~GGGniaRg~~~Ar~~Gi~r~~ 157 (239)
.+.+++++++|++. |. ++.|++||...-..++..+++|++...
T Consensus 64 ~~~~~~~~~~L~~~---~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 64 MTLFPEVIELLREL---GAGDILVVGGGIIPPEDYELLKEMGVAEIF 107 (122)
T ss_pred HHHHHHHHHHHHhc---CCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Confidence 45566666666653 33 566677764332234444578887665
No 149
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.79 E-value=51 Score=30.24 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHH-hCC-------ceEEEEECC-Chhhhhhhhhhh-------cCCCccchhHHHHHHH
Q 026370 114 ITMAIAREVASVT-RLG-------IEVAIVVGG-GNIFRGASAAGN-------SGLDRSSADYIGMLAT 166 (239)
Q Consensus 114 ~l~~iA~~I~~l~-~~G-------~~I~IV~GG-GniaRg~~~Ar~-------~Gi~r~~aD~IGMlAT 166 (239)
..++++++|++.. +.| .+++||+|| |.++|..+.... +|++- =++|.++.
T Consensus 12 ~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~---G~lGFL~~ 77 (265)
T PRK04885 12 KSKRVASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT---GHLGFYTD 77 (265)
T ss_pred HHHHHHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC---CCceeccc
Confidence 3455666666533 333 468999999 999988644332 23332 25788875
No 150
>PRK05869 enoyl-CoA hydratase; Validated
Probab=40.71 E-value=61 Score=28.35 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++. +...+++|+.|+|..| -|.+.
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl 70 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDM 70 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCH
Confidence 3489999999999999876 3668999999987543 55544
No 151
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=40.68 E-value=89 Score=32.62 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=13.0
Q ss_pred HHHHHHhCCCEEEEeCCCCC
Q 026370 203 RAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 203 ea~~~L~~G~IvVfagGtg~ 222 (239)
-+++.=++|++|.|.|.|.|
T Consensus 499 iV~~lQ~~G~~VaMtGDGvN 518 (679)
T PRK01122 499 LIRQEQAEGRLVAMTGDGTN 518 (679)
T ss_pred HHHHHHHcCCeEEEECCCcc
Confidence 34444467888888777655
No 152
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=40.35 E-value=3.3e+02 Score=26.82 Aligned_cols=134 Identities=16% Similarity=0.239 Sum_probs=63.6
Q ss_pred CcccEEEEEeccccccCC----CCCC--CC-HHHHHHHHHHHH---HHHh--C---CceEEEEECCChhhhhhhhhhhcC
Q 026370 88 YKWQRVLLKVSGEALAGD----HTQN--ID-PKITMAIAREVA---SVTR--L---GIEVAIVVGGGNIFRGASAAGNSG 152 (239)
Q Consensus 88 ~~~krIVIKLGGsaL~~d----~~~g--id-~~~l~~iA~~I~---~l~~--~---G~~I~IV~GGGniaRg~~~Ar~~G 152 (239)
+.|-+.||.+|.+.-.-. .++. ++ .+-..++-+.|. +-.+ . ..--++|+|||-. |.|+|.++-
T Consensus 98 i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~T--GVElAgeL~ 175 (405)
T COG1252 98 ISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPT--GVELAGELA 175 (405)
T ss_pred ccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChh--HHHHHHHHH
Confidence 469999999999854311 1122 22 333333333333 1122 1 1123678899888 776665431
Q ss_pred --CCccchhHH---------------HHHHH--HHHHHHHHHHHHhcCCCceEE---eccccCcccccchHHHHHHHHhC
Q 026370 153 --LDRSSADYI---------------GMLAT--VMNAIFLQATMESIGIPTRVQ---TAFRMSEVAEPYIRRRAVRHLEK 210 (239)
Q Consensus 153 --i~r~~aD~I---------------GMlAT--~LNAllL~~aL~~~gi~a~v~---SAi~i~~i~e~y~~~ea~~~L~~ 210 (239)
+++-..++. -||.+ .-..-..+..|++.|++..+- +++..+.+..... ++ .+ .
T Consensus 176 ~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g-~~---~I-~ 250 (405)
T COG1252 176 ERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDG-EE---EI-P 250 (405)
T ss_pred HHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCcEEEccC-Ce---eE-e
Confidence 111001000 11222 344457788889988764333 2223333332110 00 11 2
Q ss_pred CCEEEEeCCCCCccccch
Q 026370 211 GRVVIFAAGTGNPFFTTD 228 (239)
Q Consensus 211 G~IvVfagGtg~P~fTTD 228 (239)
...+||++|.--|-++.+
T Consensus 251 ~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 251 ADTVVWAAGVRASPLLKD 268 (405)
T ss_pred cCEEEEcCCCcCChhhhh
Confidence 346888877665555544
No 153
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.27 E-value=57 Score=26.74 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhCCc-eEEEEECCChhhhhhhhhhhcCCCccc
Q 026370 112 PKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSS 157 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~-~I~IV~GGGniaRg~~~Ar~~Gi~r~~ 157 (239)
.+.++++++.|++ .|. ++.|++||...-...+..++.|+++..
T Consensus 67 ~~~~~~~~~~L~~---~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 67 LTLVPALRKELDK---LGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHHHHHHh---cCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 3455666666654 344 555666655543334444667887776
No 154
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=39.57 E-value=44 Score=28.34 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=27.3
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCc-eEEEEECC
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGG 138 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~-~I~IV~GG 138 (239)
...|++...|..++. .++|+.|.++...|. +|+.++||
T Consensus 68 ~~~i~Ld~~Gk~~sS-----------~~fA~~l~~~~~~g~~~i~F~IGG 106 (155)
T PF02590_consen 68 DYVILLDERGKQLSS-----------EEFAKKLERWMNQGKSDIVFIIGG 106 (155)
T ss_dssp SEEEEE-TTSEE--H-----------HHHHHHHHHHHHTTS-EEEEEE-B
T ss_pred CEEEEEcCCCccCCh-----------HHHHHHHHHHHhcCCceEEEEEec
Confidence 346788888887643 578889998888886 99999998
No 155
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=39.55 E-value=96 Score=22.19 Aligned_cols=14 Identities=50% Similarity=0.895 Sum_probs=10.0
Q ss_pred EEEECCChhhhhhhhh
Q 026370 133 AIVVGGGNIFRGASAA 148 (239)
Q Consensus 133 ~IV~GGGniaRg~~~A 148 (239)
++|+|||.+ |.+.|
T Consensus 2 vvViGgG~i--g~E~A 15 (80)
T PF00070_consen 2 VVVIGGGFI--GIELA 15 (80)
T ss_dssp EEEESSSHH--HHHHH
T ss_pred EEEECcCHH--HHHHH
Confidence 578899999 44444
No 156
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=39.55 E-value=87 Score=28.28 Aligned_cols=59 Identities=14% Similarity=0.312 Sum_probs=40.5
Q ss_pred cccEEEEEecccccc----C-CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEECCCh-hhhhhhh
Q 026370 89 KWQRVLLKVSGEALA----G-DHTQNIDPKITMAIAREVASVT-RLGIEVAIVVGGGN-IFRGASA 147 (239)
Q Consensus 89 ~~krIVIKLGGsaL~----~-d~~~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGn-iaRg~~~ 147 (239)
+|..+.+..-|.+.. . ++...++.+.+.++.+.+.++. +...+++|+.|.|. +--|.+.
T Consensus 6 ~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl 71 (275)
T PRK09120 6 RWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDL 71 (275)
T ss_pred ccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCH
Confidence 366677777665542 2 2223488999999999998875 45689999999885 4344444
No 157
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=39.25 E-value=51 Score=29.34 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEECCChh-hhhhhh
Q 026370 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI-FRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGni-aRg~~~ 147 (239)
..++.+.+.++.+.+.++.+...+++|+.|.|.. --|.++
T Consensus 28 Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl 68 (260)
T PRK07659 28 NALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDI 68 (260)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCH
Confidence 3488999999999999885566899999998854 344444
No 158
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=39.16 E-value=38 Score=30.69 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=24.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhh
Q 026370 104 GDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (239)
Q Consensus 104 ~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg 144 (239)
+..+.|.|.+.|.+.-..+-.. ++-++++ ++|-||+.|.
T Consensus 60 GkrG~GYnV~~L~~ff~~~Lg~-~~~tnvi-iVG~GnlG~A 98 (211)
T COG2344 60 GKRGYGYNVKYLRDFFDDLLGQ-DKTTNVI-IVGVGNLGRA 98 (211)
T ss_pred CCCCCCccHHHHHHHHHHHhCC-CcceeEE-EEccChHHHH
Confidence 3455678777777666555443 2336655 5699999776
No 159
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=38.79 E-value=3.3e+02 Score=26.76 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEECCCh
Q 026370 109 NIDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGn 140 (239)
+++.+.|+++|+.+.+ . -+.+|+.|.|-
T Consensus 302 gv~~~~I~~lA~~~a~--~--~~~~i~~G~g~ 329 (524)
T cd02764 302 VDLDKALAALAKALAA--A--GKSLVVAGSEL 329 (524)
T ss_pred cchHHHHHHHHHHHHh--c--CCcEEEECCCC
Confidence 4678889999998875 2 24677778654
No 160
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=38.73 E-value=97 Score=28.68 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCCc---cccchHHHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNP---FFTTDTAAALR 234 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P---~fTTDt~AAlr 234 (239)
-||..|...|..+|++..-... ++.-.+ .+.+.++.++++-.+||+ .||.-| ..|-+++|.-.
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~--VgD~~~-~I~~~l~~a~~r~D~vI~-tGGLGPT~DDiT~e~vAka~ 86 (255)
T COG1058 21 TNAAFLADELTELGVDLARITT--VGDNPD-RIVEALREASERADVVIT-TGGLGPTHDDLTAEAVAKAL 86 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEe--cCCCHH-HHHHHHHHHHhCCCEEEE-CCCcCCCccHhHHHHHHHHh
Confidence 5899999999999987433321 111111 134566777778788888 444445 66777776544
No 161
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=38.39 E-value=96 Score=27.82 Aligned_cols=94 Identities=19% Similarity=0.123 Sum_probs=57.1
Q ss_pred cccEEEEEeccccccCCC--CCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccc---hhHHH
Q 026370 89 KWQRVLLKVSGEALAGDH--TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSS---ADYIG 162 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~--~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~---aD~IG 162 (239)
.|...||+.|......+. ..+...-...+.++.++..... .+-++|+|||-+.-.. +.+++.|.+-.. .++.|
T Consensus 94 ~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 94 EYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEP-PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred cccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhc-cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 378888888888655431 1111133444555555544332 3567888999995554 444667866554 44666
Q ss_pred HHHH-HHHHHHHHHHHHhcCCC
Q 026370 163 MLAT-VMNAIFLQATMESIGIP 183 (239)
Q Consensus 163 MlAT-~LNAllL~~aL~~~gi~ 183 (239)
-... ..=+..+...|+.+|+.
T Consensus 173 ~~~~~~~~~~~~~~~l~~~gi~ 194 (415)
T COG0446 173 GQLLDPEVAEELAELLEKYGVE 194 (415)
T ss_pred hhhhhHHHHHHHHHHHHHCCcE
Confidence 5555 56677778888888753
No 162
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=38.27 E-value=59 Score=26.68 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=30.3
Q ss_pred cEEEEEeccccccCCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEEEC
Q 026370 91 QRVLLKVSGEALAGDHTQNID-PKITMAIAREVASVTRLGIEVAIVVG 137 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid-~~~l~~iA~~I~~l~~~G~~I~IV~G 137 (239)
|.|++-|-|=.+..+.. .+. .+...+..+.|+++.++|++|+++.|
T Consensus 2 K~i~~DiDGTL~~~~~~-~y~~~~~~~~~ie~L~~l~~~G~~IiiaTG 48 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG-DYANVAPILAVIEKLRHYKALGFEIVISSS 48 (126)
T ss_pred CEEEEeCCCCcccCCCC-cccccccCHHHHHHHHHHHHCCCEEEEECC
Confidence 46777888876543211 111 22445666778887788999999998
No 163
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=38.22 E-value=1.1e+02 Score=27.22 Aligned_cols=40 Identities=15% Similarity=0.419 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|..| -|.++
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl 66 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADL 66 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCH
Confidence 34889999999999998753 458999999988654 34444
No 164
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=38.03 E-value=62 Score=28.66 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhhh-hhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFR-GASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGniaR-g~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|+.|- |.++
T Consensus 28 Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl 69 (251)
T PRK06023 28 NAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDM 69 (251)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCH
Confidence 34899999999999998863 4588999999976543 3444
No 165
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=37.90 E-value=1.1e+02 Score=33.83 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=14.7
Q ss_pred chHHHHHHHHhCCCEEEE
Q 026370 199 YIRRRAVRHLEKGRVVIF 216 (239)
Q Consensus 199 y~~~ea~~~L~~G~IvVf 216 (239)
.+.+|+.+++++|-..++
T Consensus 642 ~~~eEv~~A~eEGV~f~~ 659 (1028)
T PRK06567 642 LNHEELIYALALGVDFKE 659 (1028)
T ss_pred CCHHHHHHHHHcCcEEEe
Confidence 356899999999977776
No 166
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=37.54 E-value=77 Score=30.31 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc--cccchH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP--FFTTDT 229 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P--~fTTDt 229 (239)
-|+.+|.+.|++.|+...-+ .-+.++. ..+.+.+++++..++|..||++.- .||-++
T Consensus 195 sn~~~l~~~l~~~G~~~~~~-----~~v~Dd~~~i~~~l~~a~~~~DliittGG~s~g~~D~~~~a 255 (394)
T cd00887 195 SNSYMLAALLRELGAEVVDL-----GIVPDDPEALREALEEALEEADVVITSGGVSVGDYDFVKEV 255 (394)
T ss_pred ChHHHHHHHHHHCCCEEEEe-----ceeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCCcchhHHHH
Confidence 78889999999988764332 2234443 234455566668899998776643 444443
No 167
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=37.44 E-value=55 Score=27.79 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=25.7
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG 138 (239)
.|++-..|..++. .++|+.|.+..+.|.+|+.|+||
T Consensus 68 ~i~LDe~Gk~~sS-----------~~fA~~l~~~~~~g~~i~FvIGG 103 (153)
T TIGR00246 68 VVTLDIPGKPWTT-----------PQLADTLEKWKTDGRDVTLLIGG 103 (153)
T ss_pred EEEEcCCCCcCCH-----------HHHHHHHHHHhccCCeEEEEEcC
Confidence 4556666665532 46777888776777789999997
No 168
>PTZ00174 phosphomannomutase; Provisional
Probab=37.36 E-value=89 Score=27.41 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=32.6
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG 138 (239)
++|.|++-|=|=.|..++. +++. ..+.|+++.++|++++|..|-
T Consensus 4 ~~klia~DlDGTLL~~~~~--is~~----~~~ai~~l~~~Gi~~viaTGR 47 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP--ITQE----MKDTLAKLKSKGFKIGVVGGS 47 (247)
T ss_pred CCeEEEEECcCCCcCCCCC--CCHH----HHHHHHHHHHCCCEEEEEcCC
Confidence 4788999999987765542 5543 456677778889999999884
No 169
>PLN02888 enoyl-CoA hydratase
Probab=37.28 E-value=72 Score=28.65 Aligned_cols=40 Identities=18% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.+.++.+.+.++.+ ...+++|+.|.|+.| -|.++
T Consensus 32 Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl 73 (265)
T PLN02888 32 NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDL 73 (265)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCH
Confidence 34899999999999998863 558999999998544 34444
No 170
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=37.16 E-value=1.1e+02 Score=31.99 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=13.4
Q ss_pred HHHHHH-hCCCEEEEeCCCCC
Q 026370 203 RAVRHL-EKGRVVIFAAGTGN 222 (239)
Q Consensus 203 ea~~~L-~~G~IvVfagGtg~ 222 (239)
++.+.+ ++|++|-|.|.|.|
T Consensus 494 ~iV~~lQ~~G~~VaMtGDGvN 514 (673)
T PRK14010 494 NVIREEQAKGHIVAMTGDGTN 514 (673)
T ss_pred HHHHHHHhCCCEEEEECCChh
Confidence 444444 56888888777755
No 171
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=36.99 E-value=61 Score=28.66 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=38.8
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCC-hhhhhh-hhhhhcCCCcc
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-NIFRGA-SAAGNSGLDRS 156 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGG-niaRg~-~~Ar~~Gi~r~ 156 (239)
|+-+++-+=|=.+.+++ .+....+.|+++.++|.+++++.|+. .....+ +..+++|++..
T Consensus 1 ~~~~~~D~DGtl~~~~~-------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~ 62 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKE-------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPAT 62 (249)
T ss_pred CCEEEEeCCCceEcCCe-------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 35566676676555443 12345677888888999999999975 444443 44466888653
No 172
>PLN02748 tRNA dimethylallyltransferase
Probab=36.93 E-value=25 Score=35.05 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCEEEEeCCCCC
Q 026370 202 RRAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 202 ~ea~~~L~~G~IvVfagGtg~ 222 (239)
+.+.+.+.+|++||++||||-
T Consensus 102 ~~I~~I~~rgk~PIlVGGTgl 122 (468)
T PLN02748 102 PLIEEILSRNGLPVIVGGTNY 122 (468)
T ss_pred HHHHHHHhcCCCeEEEcChHH
Confidence 344556678999999999973
No 173
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=36.85 E-value=72 Score=28.71 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia 142 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|..|
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~F 65 (275)
T PLN02664 30 NALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHF 65 (275)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCce
Confidence 34899999999999998763 558999999988644
No 174
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=36.74 E-value=39 Score=32.41 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEECC-------------------Chhhhhhhh-hhhcCCCccchhHHHHHHHHHH
Q 026370 110 IDPKITMAIAREVASVTRLGIEVAIVVGG-------------------GNIFRGASA-AGNSGLDRSSADYIGMLATVMN 169 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~~~G~~I~IV~GG-------------------GniaRg~~~-Ar~~Gi~r~~aD~IGMlAT~LN 169 (239)
++++.++.+|+.++.+-. .+..||||. |.+.. |++ ..++|+++...+.+=.--...|
T Consensus 197 ~~p~~~~~~A~~l~~LG~--~ralvV~G~~GlDE~~~~~~t~v~~l~~g~i~~-~~l~pe~~Gl~~~~~~~l~~~~~~en 273 (338)
T COG0547 197 YHPELVELLAEALRLLGV--ERALVVHGLEGLDEVTPTGTTLVAELKDGEIRE-YTLTPEDFGLERAPLEDLPGGDPEEN 273 (338)
T ss_pred eCHHHHHHHHHHHHHhCc--ceEEEEECCCCcccccCCCCceEEEEcCCceEE-EEeCHHhcCCCCCchhhcCCCCHHHH
Confidence 679999999999998742 378999993 34433 422 2568888865443333377899
Q ss_pred HHHHHHHHHhcC
Q 026370 170 AIFLQATMESIG 181 (239)
Q Consensus 170 AllL~~aL~~~g 181 (239)
+.++++.|+...
T Consensus 274 a~~~~~vL~G~~ 285 (338)
T COG0547 274 AEILRAVLAGEE 285 (338)
T ss_pred HHHHHHHHCCCC
Confidence 999999997643
No 175
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=36.69 E-value=1.1e+02 Score=27.25 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++.+ ..+++|+.|.|..| =|.++
T Consensus 26 Nal~~~~~~~L~~~l~~~~~-~vr~vVl~g~g~~FsaG~Dl 65 (255)
T PRK07112 26 NTINDRLIAECMDVLDRCEH-AATIVVLEGLPEVFCFGADF 65 (255)
T ss_pred CCCCHHHHHHHHHHHHHhhc-CceEEEEEcCCCCcccCcCH
Confidence 34889999999999998764 58999999977543 34444
No 176
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=36.34 E-value=3e+02 Score=25.50 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEECC----Chhhhhh-----hhhhhcCCCccchhHHHHHHHHHHHHHHHHHHH
Q 026370 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGG----GNIFRGA-----SAAGNSGLDRSSADYIGMLATVMNAIFLQATME 178 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG----GniaRg~-----~~Ar~~Gi~r~~aD~IGMlAT~LNAllL~~aL~ 178 (239)
|-++.+.++-+.+.|+...+.|.+ .||.|. |++=-.. ++|. |++-.. |+.+..+.=-...|.. |-
T Consensus 65 FvY~~~E~~iM~~DI~~~~~lG~~-GVV~G~lt~dg~iD~~~le~Li~aA~--gL~vTF--HrAFD~~~d~~~ale~-li 138 (241)
T COG3142 65 FVYSDDELEIMLEDIRLARELGVQ-GVVLGALTADGNIDMPRLEKLIEAAG--GLGVTF--HRAFDECPDPLEALEQ-LI 138 (241)
T ss_pred cccChHHHHHHHHHHHHHHHcCCC-cEEEeeecCCCccCHHHHHHHHHHcc--CCceee--ehhhhhcCCHHHHHHH-HH
Confidence 335667788888888888887766 677786 6652221 2221 222211 2333333222233333 33
Q ss_pred hcCCCceEEeccccCcccccchHHHHHHHH--hCCCEEEEeCCCCCc
Q 026370 179 SIGIPTRVQTAFRMSEVAEPYIRRRAVRHL--EKGRVVIFAAGTGNP 223 (239)
Q Consensus 179 ~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L--~~G~IvVfagGtg~P 223 (239)
++|+. +++++=.-..-.+.. ..+.+.+ .+|+|.|++|||-+|
T Consensus 139 ~~Gv~-RILTsGg~~sa~eg~--~~l~~li~~a~gri~Im~GaGV~~ 182 (241)
T COG3142 139 ELGVE-RILTSGGKASALEGL--DLLKRLIEQAKGRIIIMAGAGVRA 182 (241)
T ss_pred HCCCc-EEecCCCcCchhhhH--HHHHHHHHHhcCCEEEEeCCCCCH
Confidence 45775 444221111112222 2333332 348999999988877
No 177
>PRK13938 phosphoheptose isomerase; Provisional
Probab=36.28 E-value=55 Score=28.58 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEECCChhhhh-hhhhhhc
Q 026370 112 PKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS 151 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg-~~~Ar~~ 151 (239)
.+.+.++++.+.+..++|.+|. +.|.|+-..- ...+.++
T Consensus 28 ~~~~~~~a~~~~~~l~~g~rI~-i~G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 28 LEAARAIGDRLIAGYRAGARVF-MCGNGGSAADAQHFAAEL 67 (196)
T ss_pred HHHHHHHHHHHHHHHHCCCEEE-EEeCcHHHHHHHHHHHHc
Confidence 5788889999888888876755 5576655333 3444344
No 178
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=36.28 E-value=69 Score=28.53 Aligned_cols=40 Identities=18% Similarity=0.448 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++. +..++++|+.|.|+.| -|.++
T Consensus 30 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl 71 (261)
T PRK08138 30 NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADI 71 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCH
Confidence 3489999999999999875 3558999999988653 44444
No 179
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=36.23 E-value=1.6e+02 Score=31.18 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r 155 (239)
.+..+.|+++.+.|++++++.|--.. .....|++.|+..
T Consensus 531 ~~~~~~i~~l~~~Gi~v~miTGD~~~-tA~~ia~~~Gi~~ 569 (884)
T TIGR01522 531 PGVKEAVTTLITGGVRIIMITGDSQE-TAVSIARRLGMPS 569 (884)
T ss_pred hHHHHHHHHHHHCCCeEEEECCCCHH-HHHHHHHHcCCCC
Confidence 45666777778889999988885332 2235567888864
No 180
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.16 E-value=13 Score=36.69 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=35.6
Q ss_pred cccCCCCCCCCCcccEEEEEeccccccCC---CCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhh
Q 026370 77 TLNDNGMSKPSYKWQRVLLKVSGEALAGD---HTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (239)
Q Consensus 77 ~~~~~~~~~~~~~~krIVIKLGGsaL~~d---~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg 144 (239)
..+++.-+|..|.-|-|||+.||..+.++ .+.+||.+-.-+ |.++-+ + ++|+|+|-|+-.
T Consensus 141 ~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~----Lee~Pk---r-~vvvGaGYIavE 203 (478)
T KOG0405|consen 141 EVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFD----LEEQPK---R-VVVVGAGYIAVE 203 (478)
T ss_pred EEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccccccccc----hhhcCc---e-EEEEccceEEEE
Confidence 44444444544456779999999999874 223466444333 333222 3 567799988544
No 181
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=35.99 E-value=2.8e+02 Score=26.59 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHhC-C-ceEEEEECCChhhhhhhhhhhcCCCccchhHHH---HHHHHHHHHHHHHHHH--hcCC
Q 026370 110 IDPKITMAIAREVASVTRL-G-IEVAIVVGGGNIFRGASAAGNSGLDRSSADYIG---MLATVMNAIFLQATME--SIGI 182 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~~~-G-~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IG---MlAT~LNAllL~~aL~--~~gi 182 (239)
-++..++-+|+.|++-.++ + -+..++.= ++ |++....|. | .--..-.+.++...|+ ..-+
T Consensus 161 ~~p~yI~a~a~~I~~~~~~~~~~~~~llfS----aH--------glP~~~~~~-GDpY~~q~~~t~~li~e~lg~~~~~~ 227 (320)
T COG0276 161 DEPLYIEALADSIREKLAKHPRDDDVLLFS----AH--------GLPKRYIDE-GDPYPQQCQETTRLIAEALGLPEEEY 227 (320)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEEEe----cC--------CCchhhhhc-CCchHHHHHHHHHHHHHHcCCCchhe
Confidence 4589999999999987654 1 12333322 11 222221111 1 1111345566777665 2223
Q ss_pred CceEEeccccCcccccchHHHHHHHHhCC--CEEEEeCCCCCccccchHHHHH
Q 026370 183 PTRVQTAFRMSEVAEPYIRRRAVRHLEKG--RVVIFAAGTGNPFFTTDTAAAL 233 (239)
Q Consensus 183 ~a~v~SAi~i~~i~e~y~~~ea~~~L~~G--~IvVfagGtg~P~fTTDt~AAl 233 (239)
...-+|-+...+-.+||+.+.++++-++| +|+|+ -|+|++|-.=.|
T Consensus 228 ~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~-----pigFvsDhlETL 275 (320)
T COG0276 228 DLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVV-----PIGFVSDHLETL 275 (320)
T ss_pred eEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEE-----CCchhhhhHHHH
Confidence 33344766667888999888888888876 66666 679999966554
No 182
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=35.90 E-value=1.2e+02 Score=27.90 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.+.++.+.+.++. +..++++|+.|.|..| -|.++
T Consensus 27 NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl 68 (298)
T PRK12478 27 NTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDF 68 (298)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCc
Confidence 3488999999999999885 3568999999998543 34443
No 183
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=35.66 E-value=62 Score=27.55 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=26.3
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCc-eEEEEECC
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGG 138 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~-~I~IV~GG 138 (239)
.|++-..|..++. .++|+.|.+....|. +++.|+||
T Consensus 70 ~i~LDe~Gk~~sS-----------~~fA~~l~~~~~~g~~~i~F~IGG 106 (157)
T PRK00103 70 VIALDERGKQLSS-----------EEFAQELERWRDDGRSDVAFVIGG 106 (157)
T ss_pred EEEEcCCCCcCCH-----------HHHHHHHHHHHhcCCccEEEEEcC
Confidence 4666667775542 567888887777775 89999997
No 184
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=35.53 E-value=45 Score=25.74 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchh
Q 026370 112 PKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD 159 (239)
.+.++++++++++... .++.|++||--+....+.+++.|+|....|
T Consensus 64 ~~~~~~~i~~l~~~~~--~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 64 MTLMKEVIEELKEAGL--DDIPVLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHHHHHHHHcCC--CCCeEEEECCCCChhHHHHHHcCCeEEECC
Confidence 4677888888887422 157778887544433456678899887755
No 185
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=35.50 E-value=82 Score=27.80 Aligned_cols=35 Identities=14% Similarity=0.388 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia 142 (239)
..++.+.++++.+.+.++. +..++++|+.|.|..|
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F 58 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFF 58 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCce
Confidence 3489999999999999876 3558999999988643
No 186
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=35.43 E-value=1.1e+02 Score=27.09 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia 142 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|..|
T Consensus 22 Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F 57 (248)
T PRK06072 22 NALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAF 57 (248)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCc
Confidence 34899999999999998863 457899999988654
No 187
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=35.36 E-value=81 Score=30.38 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=31.5
Q ss_pred EEEeccccccCCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhhhhhhhhc
Q 026370 94 LLKVSGEALAGDHTQNID-PKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNS 151 (239)
Q Consensus 94 VIKLGGsaL~~d~~~gid-~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg~~~Ar~~ 151 (239)
++.-||..|-...-..+. .+..+..++.+ .+.|.+..||+|| |+..-...++.++
T Consensus 61 ~~~~GGT~lgssR~~~~~~~e~~~~~~~~l---~~~gId~LvvIGGDgS~~gA~~Lae~~ 117 (347)
T COG0205 61 LINRGGTFLGSARFPEFKTEEGRKVAAENL---KKLGIDALVVIGGDGSYTGAALLAEEG 117 (347)
T ss_pred HHhcCCeEEeeCCCCCcccHHHHHHHHHHH---HHcCCCEEEEECCCChHHHHHHHHHhc
Confidence 345688877532211233 33444444444 4568899999999 5554444666544
No 188
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=35.16 E-value=43 Score=31.30 Aligned_cols=88 Identities=28% Similarity=0.463 Sum_probs=57.8
Q ss_pred ccEEEEEe---ccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC----ChhhhhhhhhhhcCCCccchh---
Q 026370 90 WQRVLLKV---SGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG----GNIFRGASAAGNSGLDRSSAD--- 159 (239)
Q Consensus 90 ~krIVIKL---GGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG----GniaRg~~~Ar~~Gi~r~~aD--- 159 (239)
-|-|||.| ||+++. -..++++|+++.+++ .|++.+|+ |-++ .| ...|+-.+|
T Consensus 98 vk~vvL~inSPGG~v~a-----------s~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~----IA--~aAd~I~a~p~s 159 (317)
T COG0616 98 VKAVVLRINSPGGSVVA-----------SELIARALKRLRAKK-PVVVSVGGYAASGGYY----IA--LAADKIVADPSS 159 (317)
T ss_pred CceEEEEEECcCCchhH-----------HHHHHHHHHHHhhcC-CEEEEECCeecchhhh----hh--ccCCEEEecCCc
Confidence 56788876 566543 368999999998887 89999997 5442 22 345666666
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCccccc
Q 026370 160 ---YIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP 198 (239)
Q Consensus 160 ---~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~ 198 (239)
.||.... .-=+...+++.|++..++.+-....+.++
T Consensus 160 i~GSIGVi~~---~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~ 198 (317)
T COG0616 160 ITGSIGVISG---APNFEELLEKLGVEKEVITAGEYKDILSP 198 (317)
T ss_pred eeeeceeEEe---cCCHHHHHHhcCCceeeeeccccccccCc
Confidence 5555444 44567778888988777765555444333
No 189
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=35.10 E-value=1.4e+02 Score=26.36 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|..| -|.++
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl 68 (259)
T PRK06688 27 NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDI 68 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCH
Confidence 34899999999999998864 458999999987554 44444
No 190
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=35.00 E-value=1.3e+02 Score=26.67 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|..| -|.++
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl 66 (262)
T PRK07509 25 NALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDV 66 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCH
Confidence 34889999999999998763 458999999987554 34443
No 191
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=34.97 E-value=78 Score=28.03 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.+.++.+.+.++.++..+++|+.|.|..| -|.++
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl 61 (256)
T TIGR02280 21 NSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDL 61 (256)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCH
Confidence 34889999999999999864338999999998543 44444
No 192
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=34.85 E-value=81 Score=27.88 Aligned_cols=40 Identities=20% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|+.| -|.++
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl 66 (249)
T PRK05870 25 NAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADL 66 (249)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcCh
Confidence 34899999999999998863 558899999988654 44444
No 193
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=34.79 E-value=70 Score=25.67 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=46.5
Q ss_pred eEEEEECCChhhhhh-hhhhhcCCCccc-hhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHH
Q 026370 131 EVAIVVGGGNIFRGA-SAAGNSGLDRSS-ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 208 (239)
Q Consensus 131 ~I~IV~GGGniaRg~-~~Ar~~Gi~r~~-aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L 208 (239)
+=++|+|.|..+|.. ....+.|..+.. ..+ |...+.-|...+.. .+..+. .+++..+++
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR-----t~~ra~~l~~~~~~--~~~~~~------------~~~~~~~~~ 73 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNR-----TPERAEALAEEFGG--VNIEAI------------PLEDLEEAL 73 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEES-----SHHHHHHHHHHHTG--CSEEEE------------EGGGHCHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC-----CHHHHHHHHHHcCc--ccccee------------eHHHHHHHH
Confidence 447788999999996 333456777543 221 23445555555533 222222 124566888
Q ss_pred hCCCEEEEeCCCCCccccch
Q 026370 209 EKGRVVIFAAGTGNPFFTTD 228 (239)
Q Consensus 209 ~~G~IvVfagGtg~P~fTTD 228 (239)
.+-.|+|.+.+.+.|-++-+
T Consensus 74 ~~~DivI~aT~~~~~~i~~~ 93 (135)
T PF01488_consen 74 QEADIVINATPSGMPIITEE 93 (135)
T ss_dssp HTESEEEE-SSTTSTSSTHH
T ss_pred hhCCeEEEecCCCCcccCHH
Confidence 88899998877777754443
No 194
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=34.72 E-value=1.3e+02 Score=27.47 Aligned_cols=39 Identities=13% Similarity=0.289 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 109 NIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
.++.+.++++.+.+.++.+ ...+++|+.|.|..| -|.++
T Consensus 27 al~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl 67 (288)
T PRK08290 27 AQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDL 67 (288)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCc
Confidence 4889999999999998763 458999999987543 44443
No 195
>PRK00549 competence damage-inducible protein A; Provisional
Probab=34.51 E-value=1e+02 Score=29.87 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc---cccchHHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP---FFTTDTAAAL 233 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P---~fTTDt~AAl 233 (239)
-|+..|...|.+.|+...-.. -++|+. ..+.+.++++...+||+.||. -| .+|-++++..
T Consensus 20 tN~~~L~~~L~~~G~~v~~~~-----~v~Dd~~~I~~~l~~a~~~~DlVItTGGl-Gpt~dD~t~ea~a~~ 84 (414)
T PRK00549 20 TNAQFLSEKLAELGIDVYHQT-----VVGDNPERLLSALEIAEERSDLIITTGGL-GPTKDDLTKETVAKF 84 (414)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-----EeCCCHHHHHHHHHHhccCCCEEEECCCC-CCCCCccHHHHHHHH
Confidence 688899999999998643321 233333 133344455566888886554 45 5555555543
No 196
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=34.50 E-value=1.2e+02 Score=27.02 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=36.7
Q ss_pred cEEEEEeccccc----cC-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC--Ch-hhhhhhh
Q 026370 91 QRVLLKVSGEAL----AG-DHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG--GN-IFRGASA 147 (239)
Q Consensus 91 krIVIKLGGsaL----~~-d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG--Gn-iaRg~~~ 147 (239)
..+++..-|.+. .. ++...++.+.+.++.+.+.++.+...+++|+.|+ |. +--|.++
T Consensus 4 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl 68 (261)
T PRK11423 4 QYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDI 68 (261)
T ss_pred cceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCH
Confidence 345555555443 22 2223489999999999999876555888999873 23 4455554
No 197
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=34.42 E-value=1.4e+02 Score=26.82 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|+.| -|.+.
T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl 67 (258)
T PRK06190 26 NALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDL 67 (258)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCH
Confidence 34899999999999998864 458999999988654 44444
No 198
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=34.40 E-value=91 Score=25.67 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|..| -|.++
T Consensus 21 N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl 62 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADL 62 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCH
Confidence 34899999999999998874 458899999965544 34443
No 199
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=34.23 E-value=96 Score=26.99 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=41.2
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCc
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDR 155 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r 155 (239)
|+.+++-+-|-...+.. .+....+.|+++.+.|++++||.....-...+ +..+++|++.
T Consensus 8 ~~~~~~D~dG~l~~~~~-------~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 8 YDVFLLDLWGVIIDGNH-------TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred CCEEEEecccccccCCc-------cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 78899999888655443 23566677777778899999999976543222 3335688875
No 200
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=34.22 E-value=1.3e+02 Score=27.39 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia 142 (239)
..++.+.+.++.+.+.++. +...+++|+.|.|..|
T Consensus 26 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F 61 (296)
T PRK08260 26 NAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAF 61 (296)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCe
Confidence 3488999999999999875 3558999999988654
No 201
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=34.12 E-value=79 Score=27.54 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEECCChhh-hhhhh
Q 026370 109 NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
.++.+.+.++.+.+.++. ...+++|+.|.|..| -|.+.
T Consensus 25 al~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl 63 (229)
T PRK06213 25 ALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDL 63 (229)
T ss_pred CCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCH
Confidence 488999999999999875 447999999988654 44444
No 202
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=34.10 E-value=85 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++. +...+++|+.|.|+.| -|.++
T Consensus 24 Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl 65 (255)
T PRK09674 24 NALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADL 65 (255)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccCh
Confidence 3488999999999999886 3458999999988654 33443
No 203
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=34.01 E-value=2.2e+02 Score=26.88 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhCCc-eEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEecccc
Q 026370 114 ITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 192 (239)
Q Consensus 114 ~l~~iA~~I~~l~~~G~-~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i 192 (239)
.++++.+.++++...|+ ++.||+| .+.++..... --+...|++.|++..+++.+
T Consensus 10 ~~~~l~~~l~~~~~~g~kr~livtd-~~~~~~~g~~----------------------~~v~~~L~~~gi~~~~f~~v-- 64 (383)
T cd08186 10 AIEKIGEILKDLKSKGISKVLLVTG-KSAYKKSGAW----------------------DKVEPALDEHGIEYVLYNKV-- 64 (383)
T ss_pred HHHHHHHHHHHhcccCCCEEEEEcC-ccHHhhcChH----------------------HHHHHHHHHcCCeEEEeCCC--
Confidence 56777777877644453 5666655 3332222110 01244455566665555322
Q ss_pred CcccccchHHHHHHHHhCCCE-EEEeCCCCCcc
Q 026370 193 SEVAEPYIRRRAVRHLEKGRV-VIFAAGTGNPF 224 (239)
Q Consensus 193 ~~i~e~y~~~ea~~~L~~G~I-vVfagGtg~P~ 224 (239)
..-+...+.+++.+.+++.+. +|++=|||.+.
T Consensus 65 ~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 97 (383)
T cd08186 65 TPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPI 97 (383)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 112222345566666555432 44444776654
No 204
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=33.84 E-value=81 Score=27.93 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|..| -|.++
T Consensus 21 Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl 62 (255)
T PRK06563 21 NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDL 62 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCH
Confidence 34889999999999998763 457999999987554 34444
No 205
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=33.60 E-value=47 Score=31.04 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=42.7
Q ss_pred CcccEEEEEeccccccCC--C--CCC-CCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccch---
Q 026370 88 YKWQRVLLKVSGEALAGD--H--TQN-IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSA--- 158 (239)
Q Consensus 88 ~~~krIVIKLGGsaL~~d--~--~~g-id~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~a--- 158 (239)
+.|.++||..|...-..+ + ..+ +....+. -+..|++....|-+ ++|+|||.+.-.. ...++.|.+-..-
T Consensus 99 ~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~-da~~l~~~~~~~~~-vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 99 WHWDQLFIATGAAARPLPLLDALGERCFTLRHAG-DAARLREVLQPERS-VVIVGAGTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred EEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHH-HHHHHHHHhhcCCe-EEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 359999999998753211 1 111 1111111 12233333344445 5577999884442 2224456543322
Q ss_pred hHH-HHHHHHHHHHHHHHHHHhcCCC
Q 026370 159 DYI-GMLATVMNAIFLQATMESIGIP 183 (239)
Q Consensus 159 D~I-GMlAT~LNAllL~~aL~~~gi~ 183 (239)
+++ +-.........+...+++.|++
T Consensus 177 ~~~l~~~~~~~~~~~l~~~l~~~GV~ 202 (396)
T PRK09754 177 ATVMGRNAPPPVQRYLLQRHQQAGVR 202 (396)
T ss_pred CcchhhhcCHHHHHHHHHHHHHCCCE
Confidence 222 1111112223345556666764
No 206
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.58 E-value=70 Score=29.44 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH------hCCceEEEEECC-Chhhhhhhhhhhc-----CCCccchhHHHHHHH
Q 026370 115 TMAIAREVASVT------RLGIEVAIVVGG-GNIFRGASAAGNS-----GLDRSSADYIGMLAT 166 (239)
Q Consensus 115 l~~iA~~I~~l~------~~G~~I~IV~GG-GniaRg~~~Ar~~-----Gi~r~~aD~IGMlAT 166 (239)
..++++.|++.. ++..+++||+|| |-++|..+..... |++- -++|.++.
T Consensus 13 s~~~~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~---G~lGFL~~ 73 (259)
T PRK00561 13 TEPVLPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT---GHLGFYTS 73 (259)
T ss_pred HHHHHHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec---CCCccccc
Confidence 344555555443 233589999999 9998876443222 3332 36888874
No 207
>PF11181 YflT: Heat induced stress protein YflT
Probab=33.58 E-value=2.2e+02 Score=21.92 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCce---EEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHHHH-----HHHHHHhcCCCceEE
Q 026370 116 MAIAREVASVTRLGIE---VAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIF-----LQATMESIGIPTRVQ 187 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~---I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNAll-----L~~aL~~~gi~a~v~ 187 (239)
.++...|.+|..+||+ |.||.=--. |-..++...+.+......-|++-...|.+- +...|.++|++.
T Consensus 10 ~E~~~~I~~L~~~Gy~~ddI~Vva~d~~--~~~~l~~~t~~~~~~~~~~~~~d~~~~~f~~~~d~~~~~l~~lGl~~--- 84 (103)
T PF11181_consen 10 EEALSAIEELKAQGYSEDDIYVVAKDKD--RTERLADQTDTNTVGASEESFWDKIKNFFTSGGDELRSKLESLGLSE--- 84 (103)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEEcCch--HHHHHHHhcCCceeccccccHHHHHHHhccCCcHHHHHHHHHcCCCH---
Confidence 5677778888887864 555542111 111233333444444445677766666665 788888888762
Q ss_pred eccccCcccccchHHHHHHHHhCCCEEEE
Q 026370 188 TAFRMSEVAEPYIRRRAVRHLEKGRVVIF 216 (239)
Q Consensus 188 SAi~i~~i~e~y~~~ea~~~L~~G~IvVf 216 (239)
...++..+.+++|+|+|+
T Consensus 85 -----------~ea~~y~~~l~~Gkivl~ 102 (103)
T PF11181_consen 85 -----------DEAERYEEELDQGKIVLV 102 (103)
T ss_pred -----------HHHHHHHHHHHCCCEEEe
Confidence 113566788999999997
No 208
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=33.50 E-value=1.5e+02 Score=26.44 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh-hhhhh
Q 026370 109 NIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
.++.+.++++.+.+.++. +..++++|+.|.|..| =|.++
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl 68 (263)
T PRK07799 28 ALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDL 68 (263)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCH
Confidence 489999999999999875 4458999999988543 33443
No 209
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=33.47 E-value=1.1e+02 Score=29.81 Aligned_cols=61 Identities=26% Similarity=0.356 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc--cccchHHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP--FFTTDTAAAL 233 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P--~fTTDt~AAl 233 (239)
-|+..|...|...|+...-.. -+.++. ..+.+++++++..++|+.||.|-= .+|-+++|..
T Consensus 20 tN~~~l~~~L~~~G~~v~~~~-----~v~Dd~~~i~~~l~~a~~~~DlVIttGGlgpt~dD~t~eava~~ 84 (413)
T TIGR00200 20 TNAQWLADFLAHQGLPLSRRT-----TVGDNPERLKTIIRIASERADVLIFNGGLGPTSDDLTAETIATA 84 (413)
T ss_pred chHHHHHHHHHHCCCeEEEEE-----EeCCCHHHHHHHHHHHhcCCCEEEEcCCCCCCCcccHHHHHHHH
Confidence 588888999999998643331 233333 234455566677888886554322 6666666554
No 210
>PRK10949 protease 4; Provisional
Probab=33.14 E-value=55 Score=33.70 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=52.4
Q ss_pred ccEEEEEe---ccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchh------H
Q 026370 90 WQRVLLKV---SGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD------Y 160 (239)
Q Consensus 90 ~krIVIKL---GGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD------~ 160 (239)
-|-|||.+ ||++. ..+++.++|+++.+.|..|++..|+=.--.||-.| ...|+..++ .
T Consensus 365 vkaVvLrInSpGGs~~-----------ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA--~aad~I~a~p~t~tGS 431 (618)
T PRK10949 365 VKAIVLRVNSPGGSVT-----------ASEVIRAELAAARAAGKPVVVSMGGMAASGGYWIS--TPANYIVASPSTLTGS 431 (618)
T ss_pred CcEEEEEecCCCCcHH-----------HHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHH--HhcCEEEECCCCceee
Confidence 56789987 66654 34667778877766666777767763223345332 234666665 4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEE
Q 026370 161 IGMLATVMNAIFLQATMESIGIPTRVQ 187 (239)
Q Consensus 161 IGMlAT~LNAllL~~aL~~~gi~a~v~ 187 (239)
||+.+...| +...|+++|+....+
T Consensus 432 IGV~~~~~~---~~~ll~klGV~~~~~ 455 (618)
T PRK10949 432 IGIFGVINT---VENSLDSIGVHTDGV 455 (618)
T ss_pred CcEEEEccC---HHHHHHhcCCceeEE
Confidence 777666544 677888999886655
No 211
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=33.13 E-value=80 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CceEEEEECCCh-hhhhhhh
Q 026370 109 NIDPKITMAIAREVASVTRL-GIEVAIVVGGGN-IFRGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~~-G~~I~IV~GGGn-iaRg~~~ 147 (239)
.++.+.+.++.+.+.++.++ ..+++|+.|.|+ +--|.++
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl 68 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADL 68 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCH
Confidence 48999999999999998754 699999999996 4444444
No 212
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=32.54 E-value=1.8e+02 Score=30.50 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc
Q 026370 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (239)
Q Consensus 117 ~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r 155 (239)
+..+.|+++.+.|++++++.|.- ..-....|+++|+++
T Consensus 450 ~a~eaI~~l~~~Gi~v~miTGD~-~~ta~~iA~~lGI~~ 487 (675)
T TIGR01497 450 GIKERFAQLRKMGIKTIMITGDN-RLTAAAIAAEAGVDD 487 (675)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHcCCCE
Confidence 44455556666777777766642 222234456677754
No 213
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=32.11 E-value=1.6e+02 Score=27.30 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=48.0
Q ss_pred HHHhCCceEEEEECCChhhhhh-hhh-hhcCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcccccchH
Q 026370 124 SVTRLGIEVAIVVGGGNIFRGA-SAA-GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIR 201 (239)
Q Consensus 124 ~l~~~G~~I~IV~GGGniaRg~-~~A-r~~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~ 201 (239)
.|...+-+.+.|+|-|..+|.+ ++. .-..+.+...-.. +..++..+...++.++++....
T Consensus 122 ~La~~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r----~~~~~~~~~~~~~~~~~~v~~~-------------- 183 (313)
T PF02423_consen 122 YLARPDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSR----SPERAEAFAARLRDLGVPVVAV-------------- 183 (313)
T ss_dssp HHS-TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-S----SHHHHHHHHHHHHCCCTCEEEE--------------
T ss_pred HhCcCCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEcc----ChhHHHHHHHhhccccccceec--------------
Confidence 3445556788899999999997 433 3345666542211 1244555566666655554433
Q ss_pred HHHHHHHhCCCEEEEeCCCCC--ccccchH
Q 026370 202 RRAVRHLEKGRVVIFAAGTGN--PFFTTDT 229 (239)
Q Consensus 202 ~ea~~~L~~G~IvVfagGtg~--P~fTTDt 229 (239)
+.+.++++.-.|+|.+..... |+|.-+-
T Consensus 184 ~~~~~av~~aDii~taT~s~~~~P~~~~~~ 213 (313)
T PF02423_consen 184 DSAEEAVRGADIIVTATPSTTPAPVFDAEW 213 (313)
T ss_dssp SSHHHHHTTSSEEEE----SSEEESB-GGG
T ss_pred cchhhhcccCCEEEEccCCCCCCccccHHH
Confidence 246788999999999988888 9887653
No 214
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=32.04 E-value=1.6e+02 Score=26.83 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=38.5
Q ss_pred ccEEEEEecccccc----C-CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh-hhhhh
Q 026370 90 WQRVLLKVSGEALA----G-DHTQNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 90 ~krIVIKLGGsaL~----~-d~~~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
|..|.+..-|.+.. . ++...++.+.+.++.+.+.++. +...+++|+.|.|..| -|.++
T Consensus 9 ~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl 73 (302)
T PRK08272 9 LKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDL 73 (302)
T ss_pred CCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCH
Confidence 45555555554432 2 2223488999999999999875 3458999999988654 33443
No 215
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=32.04 E-value=36 Score=28.63 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCceEEEEECCChhhhh
Q 026370 117 AIAREVASVTRLGIEVAIVVGGGNIFRG 144 (239)
Q Consensus 117 ~iA~~I~~l~~~G~~I~IV~GGGniaRg 144 (239)
.+.+.|++|.++|.+=+.|.|||.+++.
T Consensus 122 dl~~~l~~L~~~g~~~i~v~GG~~l~~~ 149 (200)
T PF01872_consen 122 DLEEALRRLKERGGKDILVEGGGSLNGS 149 (200)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEechHHHHHH
Confidence 3667777777778888999998877543
No 216
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=31.92 E-value=1.1e+02 Score=26.47 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=30.3
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG 138 (239)
+|.|++-|=|=.|..++ .++++ ..+.|+++.++|++++|..|=
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~~~----~~~ai~~l~~~G~~~~iaTGR 45 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH--TISPA----VKQAIAAARAKGVNVVLTTGR 45 (270)
T ss_pred eEEEEEecCCcCcCCCC--ccCHH----HHHHHHHHHHCCCEEEEecCC
Confidence 56788888888665443 24433 446677788889999999884
No 217
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=31.78 E-value=90 Score=27.65 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCC-h-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
..++.+.++++.+.+.++. +..++++|+.|.| + +--|.++
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl 67 (260)
T PRK05980 25 NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADI 67 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCH
Confidence 3488999999999999875 3568999999977 3 5456554
No 218
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=31.63 E-value=70 Score=31.22 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEe------ccccCcccccchHHHHHHHHhCCCEEEEeCCCCCc
Q 026370 167 VMNAIFLQATMESIGIPTRVQT------AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNP 223 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~S------Ai~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P 223 (239)
+.++..++..|++.|++..+.+ ...-=.++..+.|+++.+++.....+.. ||+..|
T Consensus 288 ~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei-~gglg~ 349 (385)
T KOG2862|consen 288 REMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEI-GGGLGP 349 (385)
T ss_pred HHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEe-ccccCC
Confidence 5678889999999998755551 1111245666789999999888877776 455555
No 219
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=31.60 E-value=72 Score=26.45 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEECCChh
Q 026370 110 IDPKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~~~G~~I~IV~GGGni 141 (239)
.|.+.+.++++.|.+..+++.+| .+.|-|.-
T Consensus 14 ~~~~~i~~a~~~i~~~i~~~~~I-~i~G~G~S 44 (177)
T cd05006 14 LLAEAIEQAAQLLAEALLNGGKI-LICGNGGS 44 (177)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEE-EEEeCcHH
Confidence 46789999999999876655454 55565543
No 220
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=31.57 E-value=92 Score=27.74 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.+.++.+.+.++. ...+++|+.|.|..| -|.++
T Consensus 24 Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl 63 (255)
T PRK08150 24 NALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDL 63 (255)
T ss_pred cCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCH
Confidence 3489999999999999875 568999999988543 34444
No 221
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=31.47 E-value=86 Score=27.07 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=31.2
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG 138 (239)
+|.|+.-|=|=.|..++ .++++ ..+.|+++.++|++++|..|=
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~~~----~~~ai~~~~~~G~~~~iaTGR 45 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--TILPE----SLEALARAREAGYKVIIVTGR 45 (272)
T ss_pred ccEEEEeCCCceECCCC--ccCHH----HHHHHHHHHHCCCEEEEEcCC
Confidence 56788888888775443 24443 456788888899999999884
No 222
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=31.38 E-value=99 Score=27.41 Aligned_cols=35 Identities=17% Similarity=0.454 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia 142 (239)
..++.+.++++.+.+.++. +..++++|+.|.|..|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F 60 (254)
T PRK08252 25 NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTF 60 (254)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCce
Confidence 3488999999999999885 3458999999988544
No 223
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=31.26 E-value=1.1e+02 Score=32.75 Aligned_cols=91 Identities=16% Similarity=0.307 Sum_probs=50.3
Q ss_pred cccEEEEEeccccccCC--CCC--C-CCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhh---hhcCCCccchhH
Q 026370 89 KWQRVLLKVSGEALAGD--HTQ--N-IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA---GNSGLDRSSADY 160 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d--~~~--g-id~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~A---r~~Gi~r~~aD~ 160 (239)
.|.+.+++=|-.++... +.. + +-...++++-..+.. .+. ++=++|+|||-. |.++| +..|++...-+
T Consensus 101 ~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~-ar~-~~~avVIGGGLL--GlEaA~~L~~~Gm~~~Vvh- 175 (793)
T COG1251 101 SYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDC-ARN-KKKAVVIGGGLL--GLEAARGLKDLGMEVTVVH- 175 (793)
T ss_pred ecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHH-Hhc-cCCcEEEccchh--hhHHHHHHHhCCCceEEEe-
Confidence 48999998444444422 111 1 212222332222222 232 233899999988 66555 34466655533
Q ss_pred HHHHHH-------HHHHHHHHHHHHhcCCCceE
Q 026370 161 IGMLAT-------VMNAIFLQATMESIGIPTRV 186 (239)
Q Consensus 161 IGMlAT-------~LNAllL~~aL~~~gi~a~v 186 (239)
|+-| ..=+.+|+..+++.|++..+
T Consensus 176 --~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l 206 (793)
T COG1251 176 --IAPTLMERQLDRTAGRLLRRKLEDLGIKVLL 206 (793)
T ss_pred --ecchHHHHhhhhHHHHHHHHHHHhhcceeec
Confidence 3333 45577899999999986444
No 224
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=31.18 E-value=1.7e+02 Score=27.85 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=40.7
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r 155 (239)
.+.|+.-|=|--|..+++-.+.. ..+.+.|+++.+.|+.++|+.+|+.---...+ +++|+++
T Consensus 126 ~kvIvFDLDgTLi~~~~~v~ird---PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~ 187 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEPVRIRD---PRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDR 187 (301)
T ss_pred ceEEEEecCCCCcCCCCccccCC---HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCc
Confidence 67899999999776654211222 34556677777889999999998765222222 4567664
No 225
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=30.97 E-value=1.7e+02 Score=26.01 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEEECCC--hhhhhhhh
Q 026370 109 NIDPKITMAIAREVASVT-RLGIEVAIVVGGG--NIFRGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGG--niaRg~~~ 147 (239)
.++.+.+.++.+.+.++. +...+++|+.|.| .+--|.++
T Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl 68 (259)
T PRK06494 27 ALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDL 68 (259)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccH
Confidence 488999999999999875 4558999999976 35555544
No 226
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=30.95 E-value=98 Score=27.47 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia 142 (239)
..++.+.+.++.+.+.++. +.+.+++|+.|.|..|
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F 58 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGF 58 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCce
Confidence 3488999999999999875 4568999999988554
No 227
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=30.84 E-value=1.4e+02 Score=26.61 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCC-h-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.| + +--|.++
T Consensus 30 Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl 72 (262)
T PRK06144 30 NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDI 72 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCH
Confidence 34889999999999998764 458999999977 3 5555554
No 228
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=30.70 E-value=66 Score=27.69 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEEECCChh
Q 026370 111 DPKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (239)
Q Consensus 111 d~~~l~~iA~~I~~l~~~G~~I~IV~GGGni 141 (239)
..+.+.+.++.|.+...+|.+|. +.|.|.-
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~-i~G~G~S 55 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVL-SCGNGGS 55 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEE-EEeCcHH
Confidence 35788999999998888776765 5566544
No 229
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=30.64 E-value=79 Score=31.94 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=32.1
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHH------HHHHHHHHHHHhCCceEEEEECCChhhhhh
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKIT------MAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l------~~iA~~I~~l~~~G~~I~IV~GGGniaRg~ 145 (239)
||..++|..|.++...+. .|.+.+.+ .+....++++ +. ...++++|||-+.-.+
T Consensus 169 kys~LilATGs~~~~l~~-pG~~~~nv~~ireieda~~l~~~~-~~-~~~vV~vG~G~ig~Ev 228 (478)
T KOG1336|consen 169 KYSKLIIATGSSAKTLDI-PGVELKNVFYLREIEDANRLVAAI-QL-GGKVVCVGGGFIGMEV 228 (478)
T ss_pred ecceEEEeecCccccCCC-CCccccceeeeccHHHHHHHHHHh-cc-CceEEEECchHHHHHH
Confidence 699999999998877543 23332222 2222333333 33 3567788999994443
No 230
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=30.57 E-value=67 Score=31.27 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEEC
Q 026370 112 PKITMAIAREVASVTRLGIEVAIVVG 137 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~~I~IV~G 137 (239)
+-.++++|.+|.++.++|.+|++|.|
T Consensus 183 e~~i~~IA~E~~ei~~kgGkIvvv~G 208 (415)
T COG1915 183 ETLIEQIAWEIREIRDKGGKIVVVAG 208 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 56789999999999999999887755
No 231
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=30.48 E-value=70 Score=32.69 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccchh
Q 026370 105 DHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSAD 159 (239)
Q Consensus 105 d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD 159 (239)
.+++|++.+.+++++ +.|++++|++..|.-.... +.|++.|++-...|
T Consensus 110 ~eGYGl~~~~i~~~~-------~~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtD 158 (575)
T PRK11070 110 EDGYGLSPEVVDQAH-------ARGAQLIVTVDNGISSHAGVAHAHALGIPVLVTD 158 (575)
T ss_pred cCCCCCCHHHHHHHH-------hcCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence 345678877666554 3578999999999987775 77888998766655
No 232
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.74 E-value=97 Score=28.85 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=28.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEEC
Q 026370 103 AGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (239)
Q Consensus 103 ~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~G 137 (239)
.++.+.|+|.+.++-+++.|.++.+.|.-+.|++=
T Consensus 168 LDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITH 202 (251)
T COG0396 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITH 202 (251)
T ss_pred ecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 34555679999999999999999998777666554
No 233
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=29.62 E-value=1.5e+02 Score=27.63 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=22.2
Q ss_pred CC-HHHHHHHHHHHHHHHhCCceEEEEECC-Chhhhh
Q 026370 110 ID-PKITMAIAREVASVTRLGIEVAIVVGG-GNIFRG 144 (239)
Q Consensus 110 id-~~~l~~iA~~I~~l~~~G~~I~IV~GG-GniaRg 144 (239)
++ .++.+...+.|.++.+.| ++.||+|| |-+++.
T Consensus 68 ~~v~~f~~~a~~~i~~~~~~g-~~pi~vGGTg~Yi~a 103 (287)
T TIGR00174 68 YSAADFQTLALNAIADITARG-KIPLLVGGTGLYLKA 103 (287)
T ss_pred EcHHHHHHHHHHHHHHHHhCC-CCEEEEcCcHHHHHH
Confidence 44 445556666777777775 67788888 555444
No 234
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=29.46 E-value=1.1e+02 Score=27.26 Aligned_cols=39 Identities=10% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 109 NIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
.++.+.+.++.+.+.++.+ ...+++|+.|.|+.| -|.++
T Consensus 29 al~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl 69 (260)
T PRK07827 29 ALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADL 69 (260)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcCh
Confidence 4889999999999998763 457999999998643 44444
No 235
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=29.36 E-value=1.1e+02 Score=27.26 Aligned_cols=40 Identities=15% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCC-h-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
..++.+.+.++.+.+.++. +..++++|+.|.| + +--|.++
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl 71 (256)
T PRK06143 29 NILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADI 71 (256)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCH
Confidence 3489999999999999876 4568999999977 3 5566554
No 236
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=29.30 E-value=73 Score=27.62 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=49.8
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchh---HHHHHHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD---YIGMLAT 166 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD---~IGMlAT 166 (239)
-+-|||.+.. . +-+.....++.+.|.++.+ +..|+..+.|--.--||.+| ...|...+. .+|....
T Consensus 43 i~~Vvl~~~s-----~---gg~~~~~~~l~~~l~~~~~-~KpViA~v~g~a~s~gy~lA--~~aD~i~a~~~a~~g~iG~ 111 (214)
T cd07022 43 VRAIVLDIDS-----P---GGEVAGVFELADAIRAARA-GKPIVAFVNGLAASAAYWIA--SAADRIVVTPTAGVGSIGV 111 (214)
T ss_pred CcEEEEEEeC-----C---CCcHHHHHHHHHHHHHHhc-CCCEEEEECCchhhHHHHHH--hcCCEEEEcCCCeEEeeeE
Confidence 4567887522 1 1245567778888888764 44444433332344456555 234555444 2222223
Q ss_pred HHHHHHHHHHHHhcCCCceEEe
Q 026370 167 VMNAIFLQATMESIGIPTRVQT 188 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~S 188 (239)
.+.-..+...|+++|++..++.
T Consensus 112 ~~~~~~~~~ll~k~Gi~~~~~~ 133 (214)
T cd07022 112 VASHVDQSKALEKAGLKVTLIF 133 (214)
T ss_pred EEecCCHHHHHHhCCCeEEEEE
Confidence 3344457888999999877763
No 237
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=29.06 E-value=1.8e+02 Score=25.49 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHh--CCCEEEEeCCCCCc--cccchHHHHHHhhhc
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLE--KGRVVIFAAGTGNP--FFTTDTAAALRCAEI 238 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~--~G~IvVfagGtg~P--~fTTDt~AAlrA~Ei 238 (239)
-|+.+|.+.|++.|....... ..-++++. ..+.+.++++ .-.++|+.||+|-= .+|-+++..+...|+
T Consensus 23 ~ng~~L~~~L~~~G~~g~~v~---~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvTpeAv~~l~~kei 96 (193)
T PRK09417 23 KGIPALEEWLASALTSPFEIE---TRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPEATLAVADKEM 96 (193)
T ss_pred chHHHHHHHHHHcCCCCceEE---EEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcHHHHHHHHhCCcC
Confidence 577888888888765322111 11234443 2334445554 45888887777654 677777666655443
No 238
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=28.97 E-value=87 Score=29.38 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=29.8
Q ss_pred cccc-hHHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhcC
Q 026370 196 AEPY-IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIS 239 (239)
Q Consensus 196 ~e~y-~~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei~ 239 (239)
++++ +.+-++...++|++|. ||-+.|-+.|.|-+|+|
T Consensus 121 PD~~etl~Aae~Lv~eGF~Vl-------PY~~~D~v~a~rLed~G 158 (267)
T CHL00162 121 PDPIGTLKAAEFLVKKGFTVL-------PYINADPMLAKHLEDIG 158 (267)
T ss_pred CChHHHHHHHHHHHHCCCEEe-------ecCCCCHHHHHHHHHcC
Confidence 3444 5667777888998887 99999999999998875
No 239
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=28.90 E-value=2.2e+02 Score=24.58 Aligned_cols=58 Identities=22% Similarity=0.163 Sum_probs=37.9
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCC---ceEEEEECCChhhhhh-hhhhhcCCCc
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLG---IEVAIVVGGGNIFRGA-SAAGNSGLDR 155 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G---~~I~IV~GGGniaRg~-~~Ar~~Gi~r 155 (239)
.++.+|+=+.--.+. + ..+.....+..+.++| .+.+|..++||..+.. ..++.+|++-
T Consensus 15 ~~l~~K~e~~~ptgS----~---K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~ 76 (244)
T cd00640 15 ANIYLKLEFLNPTGS----F---KDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKC 76 (244)
T ss_pred CEEEEEecccCCcCC----c---HHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCE
Confidence 477888765532221 2 4455666666666666 6788888899998886 5556677643
No 240
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=28.74 E-value=2e+02 Score=26.15 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=12.5
Q ss_pred CcccEEEEEecccccc
Q 026370 88 YKWQRVLLKVSGEALA 103 (239)
Q Consensus 88 ~~~krIVIKLGGsaL~ 103 (239)
+.|..+||+.|.....
T Consensus 94 ~~yD~LviAtG~~~~~ 109 (364)
T TIGR03169 94 LSYDVLSLDVGSTTPL 109 (364)
T ss_pred ccccEEEEccCCCCCC
Confidence 3599999999987543
No 241
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=28.69 E-value=1.2e+02 Score=26.96 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCC-h-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
..++.+.+.++.+.+.++. +...+++|+.|.| + +--|.++
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl 66 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADL 66 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCH
Confidence 3488999999999999876 3568999999977 4 5566655
No 242
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.52 E-value=87 Score=28.83 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcC
Q 026370 112 PKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG 152 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~G 152 (239)
++..++++..|+.+.++|.++.-++|+=.++-|...+++.|
T Consensus 50 ~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfll~~~f~~~~g 90 (237)
T COG2908 50 PQLHRQVAQKLLRLARKGTRVYYIHGNHDFLLGKRFAQEAG 90 (237)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHHHHHhhcC
Confidence 67889999999999999999999999966666654445566
No 243
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=28.22 E-value=2.4e+02 Score=24.60 Aligned_cols=63 Identities=25% Similarity=0.282 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCC-CEEEEeCCCCCc--cccchHHHHHHhhhc
Q 026370 171 IFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKG-RVVIFAAGTGNP--FFTTDTAAALRCAEI 238 (239)
Q Consensus 171 llL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G-~IvVfagGtg~P--~fTTDt~AAlrA~Ei 238 (239)
.+|.+.|+..|.....+. -+++++ ....+.+.+... .++|.-||||-- ..|-+++-++.=.||
T Consensus 30 ~~l~~~L~~ag~~~~~~~-----iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dKei 97 (169)
T COG0521 30 PLLVELLEEAGHNVAAYT-----IVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDKEI 97 (169)
T ss_pred hHHHHHHHHcCCccceEE-----EeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhccC
Confidence 466777777776542221 244444 233333434443 688888999976 788888877765554
No 244
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=28.22 E-value=1.1e+02 Score=25.72 Aligned_cols=44 Identities=16% Similarity=0.384 Sum_probs=30.4
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCC
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGG 139 (239)
+|-++.-|=|=.|..++ .+. .+..+.|+++.+.|++++|+.|=.
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~----~~~~~al~~l~~~G~~~~iaTGR~ 46 (230)
T PRK01158 3 IKAIAIDIDGTITDKDR--RLS----LKAVEAIRKAEKLGIPVILATGNV 46 (230)
T ss_pred eeEEEEecCCCcCCCCC--ccC----HHHHHHHHHHHHCCCEEEEEcCCc
Confidence 56777788888665443 133 344566777778899999998854
No 245
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=27.85 E-value=82 Score=30.71 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=31.6
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 135 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV 135 (239)
+.|||+|.+==++-. +.+...|..+|++....|+.+.++|.+|+|+
T Consensus 8 ~gK~VlvRvD~NvPi-~~g~I~Dd~RI~~~lpTI~~l~~~gakvVl~ 53 (384)
T PF00162_consen 8 KGKRVLVRVDFNVPI-KNGKITDDTRIRAALPTIKYLLEKGAKVVLM 53 (384)
T ss_dssp TTEEEEEEE-----E-ETTEES-THHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCEEEEEeCCCCCc-CCCcCCCcchHHHHHHHHHHHHhcCCeEEEE
Confidence 578998887666554 2223367789999999999999999997655
No 246
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=27.73 E-value=1.7e+02 Score=25.83 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChh-hhhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNI-FRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGni-aRg~~~ 147 (239)
..++.+.++++.+.+.++. +...+++|+.|.|+. --|.++
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl 65 (255)
T PRK07260 24 NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDL 65 (255)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCH
Confidence 3488999999999999875 355788999998854 444444
No 247
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=27.56 E-value=1.1e+02 Score=25.20 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccch
Q 026370 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA 158 (239)
Q Consensus 117 ~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~a 158 (239)
...+.|+.+.++|++++||.|+-..+-. ..++.+|++...+
T Consensus 91 ~~~~~l~~l~~~g~~v~ivS~s~~~~v~-~~~~~lg~~~~~~ 131 (202)
T TIGR01490 91 EARDLIRWHKAEGHTIVLVSASLTILVK-PLARILGIDNAIG 131 (202)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHH-HHHHHcCCcceEe
Confidence 3444556666789999999987655333 3345677765543
No 248
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.53 E-value=1.3e+02 Score=24.65 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=29.6
Q ss_pred hHHHHHHHHhCCCEEEEeCCC-CCc--cccchHHHHHHhh
Q 026370 200 IRRRAVRHLEKGRVVIFAAGT-GNP--FFTTDTAAALRCA 236 (239)
Q Consensus 200 ~~~ea~~~L~~G~IvVfagGt-g~P--~fTTDt~AAlrA~ 236 (239)
+.+.+.+.++..+|++|.=|| ..| |||.-++.+|.+.
T Consensus 4 i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~ 43 (105)
T COG0278 4 ILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC 43 (105)
T ss_pred HHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc
Confidence 457888999999999998544 445 9999998888764
No 249
>PRK08329 threonine synthase; Validated
Probab=27.48 E-value=2.3e+02 Score=26.51 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=37.6
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCcc
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRS 156 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~ 156 (239)
++.+|+-+ +.+.+. + ..+.....|.++.+.|.+-+|+...||..+.. -.|+..|++-.
T Consensus 73 ~l~~K~E~--~nPtGS--f---KdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~ 131 (347)
T PRK08329 73 KVYFKLDY--LQPTGS--F---KDRGTYVTVAKLKEEGINEVVIDSSGNAALSLALYSLSEGIKVH 131 (347)
T ss_pred eEEEEeCC--CCCCcC--C---HHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHcCCcEE
Confidence 57778733 333322 3 44555666666777788888999999998885 44455676533
No 250
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=27.42 E-value=1.3e+02 Score=26.84 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia 142 (239)
..++.+.+.++.+.+.++. +...+++|+.|.|..|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~F 60 (254)
T PRK08259 25 NAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTF 60 (254)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCc
Confidence 3489999999999999875 3558899999988654
No 251
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=27.36 E-value=74 Score=27.81 Aligned_cols=45 Identities=36% Similarity=0.498 Sum_probs=31.0
Q ss_pred HHHHHhcCCC--ceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCC
Q 026370 174 QATMESIGIP--TRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 174 ~~aL~~~gi~--a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~ 222 (239)
.+.|++.|++ .+|+||=+.++....| ++++-++|.=||.||.||-
T Consensus 22 a~~L~~fgi~ye~~VvSAHRTPe~m~~y----a~~a~~~g~~viIAgAGgA 68 (162)
T COG0041 22 AEILEEFGVPYEVRVVSAHRTPEKMFEY----AEEAEERGVKVIIAGAGGA 68 (162)
T ss_pred HHHHHHcCCCeEEEEEeccCCHHHHHHH----HHHHHHCCCeEEEecCcch
Confidence 3456777776 5777887766555444 7788889976777766663
No 252
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=27.36 E-value=3.2e+02 Score=26.22 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccC
Q 026370 114 ITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 193 (239)
Q Consensus 114 ~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~ 193 (239)
.++++.++++++ |.+.++|++++.+..--...+ +...|++.|+...+++ .+.
T Consensus 36 ~~~~l~~~~~~~---g~~~~lvv~~~~~~~~g~~~~-----------------------v~~~L~~~gi~~~~~~--~v~ 87 (395)
T PRK15454 36 AVSSCGQQAQTR---GLKHLFVMADSFLHQAGMTAG-----------------------LTRSLAVKGIAMTLWP--CPV 87 (395)
T ss_pred HHHHHHHHHHhc---CCCEEEEEcCcchhhCccHHH-----------------------HHHHHHHcCCeEEEEC--CCC
Q ss_pred cccccchHHHHHHHHhCCCE-EEEeCCCCCc
Q 026370 194 EVAEPYIRRRAVRHLEKGRV-VIFAAGTGNP 223 (239)
Q Consensus 194 ~i~e~y~~~ea~~~L~~G~I-vVfagGtg~P 223 (239)
.-+.....+++.+..++.+. .|++=|||.+
T Consensus 88 ~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 88 GEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred CCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
No 253
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=27.34 E-value=1.2e+02 Score=26.54 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=24.4
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEE
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~ 136 (239)
|||++-++|+. . .++...+.+++|.+.|++|-+|.
T Consensus 1 ~~I~lgITGs~-~----------a~~a~~~ll~~L~~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSH-C----------TLEAVMPQLEKLVDEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHH-H----------HHHHHHHHHHHHHhCcCEEEEEE
Confidence 57999999983 2 34555577777778888885444
No 254
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=27.09 E-value=4.6e+02 Score=24.30 Aligned_cols=95 Identities=22% Similarity=0.364 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEEECC--Chhhhhhh-------------hhhhcCCCcc-chhHHHHHHHHHHHH
Q 026370 109 NIDPKITMAIAREVASVT-RLGIEVAIVVGG--GNIFRGAS-------------AAGNSGLDRS-SADYIGMLATVMNAI 171 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~-~~G~~I~IV~GG--GniaRg~~-------------~Ar~~Gi~r~-~aD~IGMlAT~LNAl 171 (239)
.+.+..+.++++.|.++. +.|.+-+|..|| ....++.. ..+++|+.-. .+--.||.+..+|.-
T Consensus 86 ~I~p~~i~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e~~~v~~va~~~~~~~~l~~~~~~~~~~G~I~G~~g~ll~e~ 165 (244)
T COG1938 86 PIPPAVIYEISNAVVEWAEENGVEEVISLGGMPARLREEKPSVYGVATSEEKLEKLKDLGAEPLEEGTIVGPSGALLNEC 165 (244)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCcccccCCCceEEEecchhhhhHHhhcCCCccccceeecccHHHHHHH
Confidence 467889999999999887 478899999995 33322210 0011221111 112345555555443
Q ss_pred HHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHh
Q 026370 172 FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 209 (239)
Q Consensus 172 lL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~ 209 (239)
+.+ ++++.++-+=+....+|+.-...+.++++
T Consensus 166 -----~~r-~i~a~~ll~et~~~~PDP~AAa~vve~ln 197 (244)
T COG1938 166 -----LKR-GIPALVLLAETFGDRPDPRAAARVVEALN 197 (244)
T ss_pred -----HHc-CCCeEEEeccccCCCCChHHHHHHHHHHH
Confidence 333 68877764433455566654444444443
No 255
>PRK05920 aromatic acid decarboxylase; Validated
Probab=27.09 E-value=1.4e+02 Score=26.60 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=24.5
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEE
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~ 136 (239)
.|||+|-++|++ . .-+..+.+++|.+.|++|-+|.
T Consensus 3 ~krIllgITGsi-a-----------a~ka~~lvr~L~~~g~~V~vi~ 37 (204)
T PRK05920 3 MKRIVLAITGAS-G-----------AIYGVRLLECLLAADYEVHLVI 37 (204)
T ss_pred CCEEEEEEeCHH-H-----------HHHHHHHHHHHHHCCCEEEEEE
Confidence 378999999984 2 1356667777777788766544
No 256
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=26.93 E-value=1.1e+02 Score=27.58 Aligned_cols=41 Identities=24% Similarity=0.495 Sum_probs=26.2
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChh
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGni 141 (239)
++|+|-+||+--. + ...++.+.|.++ ...+++.+|+|.++-
T Consensus 171 ~~iLi~~GG~d~~--~-------~~~~~l~~l~~~-~~~~~i~vv~G~~~~ 211 (279)
T TIGR03590 171 RRVLVSFGGADPD--N-------LTLKLLSALAES-QINISITLVTGSSNP 211 (279)
T ss_pred CeEEEEeCCcCCc--C-------HHHHHHHHHhcc-ccCceEEEEECCCCc
Confidence 5789999988321 1 234555555554 344788899997764
No 257
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=26.93 E-value=1.7e+02 Score=27.85 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=38.6
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r 155 (239)
++.|+.-|=|-.+..+++-.+.. ..+.+.|++|.++|++++|+.+|..-.-...+ +++|++.
T Consensus 128 ~~~i~~D~D~TL~~~~~~v~ird---p~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~ 189 (303)
T PHA03398 128 PHVIVFDLDSTLITDEEPVRIRD---PFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEG 189 (303)
T ss_pred ccEEEEecCCCccCCCCccccCC---hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCc
Confidence 56789999999777654211222 34555677777889999999876333222222 4467664
No 258
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=26.86 E-value=1.6e+02 Score=27.62 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=34.8
Q ss_pred EEeccccccCCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhc
Q 026370 95 LKVSGEALAGDHTQNI-DPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNS 151 (239)
Q Consensus 95 IKLGGsaL~~d~~~gi-d~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~ 151 (239)
...||..|-......+ +.+..+++++.|+++ +.+..||+||-.-+++. .+++++
T Consensus 59 ~~~gGt~LgtsR~~~~~~~~~~~~~~~~l~~~---~Id~Li~IGGdgs~~~a~~L~e~~ 114 (301)
T TIGR02482 59 IHRGGTILGTARCPEFKTEEGRQKAVENLKKL---GIEGLVVIGGDGSYTGAQKLYEEG 114 (301)
T ss_pred HhCCCceeccCCCCccCCHHHHHHHHHHHHHc---CCCEEEEeCCchHHHHHHHHHHhh
Confidence 3678987753221123 466778888887753 57888999996666664 665434
No 259
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=26.86 E-value=1.4e+02 Score=26.48 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=24.9
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEE
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 136 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~ 136 (239)
+.|+|+|-++|++ . .++...+.++++.+.|++|-+|.
T Consensus 4 ~~k~IllgVTGsi-a----------a~k~a~~lir~L~k~G~~V~vv~ 40 (196)
T PRK08305 4 KGKRIGFGLTGSH-C----------TYDEVMPEIEKLVDEGAEVTPIV 40 (196)
T ss_pred CCCEEEEEEcCHH-H----------HHHHHHHHHHHHHhCcCEEEEEE
Confidence 3578999999983 2 23335666677777788875444
No 260
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=26.76 E-value=4e+02 Score=25.83 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=38.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhh---hh-hhhhhcCCCc
Q 026370 104 GDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR---GA-SAAGNSGLDR 155 (239)
Q Consensus 104 ~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaR---g~-~~Ar~~Gi~r 155 (239)
++...++++..++.+...|....++|.+|++=-||.|... .. +.+++.|++-
T Consensus 46 ~~p~~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~l 101 (362)
T PF07287_consen 46 KDPTKGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSL 101 (362)
T ss_pred hCCCCCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCe
Confidence 3445568889999999999998899999887777755432 22 6667777763
No 261
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=26.73 E-value=73 Score=26.61 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCceEEEEECCChh
Q 026370 117 AIAREVASVTRLGIEVAIVVGGGNI 141 (239)
Q Consensus 117 ~iA~~I~~l~~~G~~I~IV~GGGni 141 (239)
.+.+.|+++.+.||+|+||.==+.+
T Consensus 33 ~v~~~L~~l~~~Gy~IvIvTNQ~gi 57 (159)
T PF08645_consen 33 GVPEALRELHKKGYKIVIVTNQSGI 57 (159)
T ss_dssp THHHHHHHHHHTTEEEEEEEE-CCC
T ss_pred hHHHHHHHHHhcCCeEEEEeCcccc
Confidence 4777888888999999999753333
No 262
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=26.70 E-value=1.1e+02 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia 142 (239)
..++.+.++++.+.|.++. +..++++|+.|.|..|
T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F 60 (260)
T PRK07511 25 NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFF 60 (260)
T ss_pred cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCc
Confidence 3489999999999999986 3558999999987554
No 263
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=26.70 E-value=1.3e+02 Score=27.13 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.++++.+.+.++.+ ...+++|+.|.|..| -|.++
T Consensus 32 Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl 73 (276)
T PRK05864 32 NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADH 73 (276)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcch
Confidence 34889999999999998763 458999999988554 34444
No 264
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=26.57 E-value=1.8e+02 Score=27.09 Aligned_cols=18 Identities=22% Similarity=0.006 Sum_probs=14.2
Q ss_pred chHHHHHHHHhCCCEEEE
Q 026370 199 YIRRRAVRHLEKGRVVIF 216 (239)
Q Consensus 199 y~~~ea~~~L~~G~IvVf 216 (239)
.+.+.+.+++++..+||-
T Consensus 56 ~~~~~l~~~~~~~dvVin 73 (386)
T PF03435_consen 56 NDPESLAELLRGCDVVIN 73 (386)
T ss_dssp TTHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHHhcCCEEEE
Confidence 345678888999999995
No 265
>PRK06823 ornithine cyclodeaminase; Validated
Probab=26.37 E-value=2.7e+02 Score=25.99 Aligned_cols=87 Identities=9% Similarity=0.057 Sum_probs=51.0
Q ss_pred HHHhCCceEEEEECCChhhhhh-hhhhh-cCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcccccchH
Q 026370 124 SVTRLGIEVAIVVGGGNIFRGA-SAAGN-SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIR 201 (239)
Q Consensus 124 ~l~~~G~~I~IV~GGGniaRg~-~~Ar~-~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~ 201 (239)
.|...+-+.+-++|-|..+|.+ ++... ..+.+...-. -+..++..+...++..+++..+.
T Consensus 122 ~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~----r~~~~a~~~~~~~~~~~~~v~~~-------------- 183 (315)
T PRK06823 122 LLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWG----RSETALEEYRQYAQALGFAVNTT-------------- 183 (315)
T ss_pred HhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEEC----CCHHHHHHHHHHHHhcCCcEEEE--------------
Confidence 3444556778899999999997 33222 2344433211 11233333344444445543332
Q ss_pred HHHHHHHhCCCEEEEeCCCCCccccch
Q 026370 202 RRAVRHLEKGRVVIFAAGTGNPFFTTD 228 (239)
Q Consensus 202 ~ea~~~L~~G~IvVfagGtg~P~fTTD 228 (239)
+.+.++++.-.||+.+.....|+|..|
T Consensus 184 ~~~~~av~~ADIV~taT~s~~P~~~~~ 210 (315)
T PRK06823 184 LDAAEVAHAANLIVTTTPSREPLLQAE 210 (315)
T ss_pred CCHHHHhcCCCEEEEecCCCCceeCHH
Confidence 246677888889998888888888655
No 266
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=26.34 E-value=1.4e+02 Score=31.23 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=46.4
Q ss_pred cccEEEEEeccccccCCC----CCC-CCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccchh---
Q 026370 89 KWQRVLLKVSGEALAGDH----TQN-IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSAD--- 159 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~----~~g-id~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD--- 159 (239)
.|.++||..|.....++- ..+ +....+.+ ++.+++..+.+-+ ++|+|||.+.-.. ...++.|.+-..-+
T Consensus 96 ~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d-~~~i~~~~~~~k~-vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 96 SYDKLILATGSYPFILPIPGADKKGVYVFRTIED-LDAIMAMAQRFKK-AAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred eCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHH-HHHHHHHhhcCCe-EEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 599999998887654321 111 11111222 3344444444444 5788999884432 22244565433322
Q ss_pred HH-HHHHHHHHHHHHHHHHHhcCCC
Q 026370 160 YI-GMLATVMNAIFLQATMESIGIP 183 (239)
Q Consensus 160 ~I-GMlAT~LNAllL~~aL~~~gi~ 183 (239)
++ .-..-...+..+...|++.|++
T Consensus 174 ~ll~~~ld~~~~~~l~~~l~~~GV~ 198 (785)
T TIGR02374 174 GLMAKQLDQTAGRLLQRELEQKGLT 198 (785)
T ss_pred chhhhhcCHHHHHHHHHHHHHcCCE
Confidence 21 1001122344566778887875
No 267
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=26.32 E-value=1.3e+02 Score=26.77 Aligned_cols=35 Identities=11% Similarity=0.414 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF 142 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia 142 (239)
..++.+.++++.+.+.++. +...+++|+.|.|+.|
T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F 62 (262)
T PRK07468 27 NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSF 62 (262)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcc
Confidence 3488999999999999875 3457899999987543
No 268
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=26.14 E-value=63 Score=27.93 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=52.0
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchh---HHHHHHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD---YIGMLAT 166 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD---~IGMlAT 166 (239)
-+-|||.+. . .+-+.....++.+.|+++. .|..|+..+.|-..-.|+.+| ...|+..+. .+|....
T Consensus 31 i~~vvl~~~-----s---~Gg~~~~~~~l~~~i~~~~-~~kpvia~v~g~a~s~g~~la--~aaD~i~a~p~a~vg~iGv 99 (207)
T TIGR00706 31 IKALLLRIN-----S---PGGTVVASEEIYEKLKKLK-AKKPVVASMGGVAASGGYYIA--MAADEIVANPGTITGSIGV 99 (207)
T ss_pred ccEEEEEec-----C---CCCCHHHHHHHHHHHHHhc-CCCCEEEEECCccchHHHHHH--hcCCEEEECCCCeEEeeeE
Confidence 456777752 1 1234567788888888875 344555444443333566554 234555444 2233333
Q ss_pred HHHHHHHHHHHHhcCCCceEEec
Q 026370 167 VMNAIFLQATMESIGIPTRVQTA 189 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SA 189 (239)
.+..+.+...|+++|++..++.+
T Consensus 100 ~~~~~~~~~~l~k~Gv~~~~~~~ 122 (207)
T TIGR00706 100 ILQGANVEKLYEKLGIEFEVIKS 122 (207)
T ss_pred EEecCCHHHHHHhCCceEEEEEc
Confidence 44455689999999998877743
No 269
>smart00463 SMR Small MutS-related domain.
Probab=26.04 E-value=1.4e+02 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhCCc--eEEEEECCCh
Q 026370 112 PKITMAIAREVASVTRLGI--EVAIVVGGGN 140 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~--~I~IV~GGGn 140 (239)
.+.+..+-+.|.++.+.+. .+-||||-|+
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccC
Confidence 4566666777777777775 6889999774
No 270
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=25.98 E-value=1.3e+02 Score=26.68 Aligned_cols=54 Identities=11% Similarity=-0.033 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCC
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGT 220 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGt 220 (239)
..+..-+...+++.|+...++.++...+....++++.+.+..+.-.+||.++|+
T Consensus 145 ~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGG 198 (241)
T PRK14024 145 GGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGG 198 (241)
T ss_pred CccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCC
Confidence 345556666778888888888877775555666777777777777788886554
No 271
>PLN02645 phosphoglycolate phosphatase
Probab=25.92 E-value=1.3e+02 Score=27.65 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=41.8
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh--hhhhhcCCCc
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA--SAAGNSGLDR 155 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~--~~Ar~~Gi~r 155 (239)
|+.+++-+=|=.+.++. .+....+.|+.+.++|++++++.+++.-.+.. +..+++|++-
T Consensus 28 ~~~~~~D~DGtl~~~~~-------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~ 88 (311)
T PLN02645 28 VETFIFDCDGVIWKGDK-------LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNV 88 (311)
T ss_pred CCEEEEeCcCCeEeCCc-------cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCC
Confidence 88899999888766543 23455777888888899999999987554442 2225688763
No 272
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=25.89 E-value=30 Score=34.77 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=13.8
Q ss_pred EEEECCChhhhhhhhhhhc
Q 026370 133 AIVVGGGNIFRGASAAGNS 151 (239)
Q Consensus 133 ~IV~GGGniaRg~~~Ar~~ 151 (239)
.+|||||.. |.|.|.|+
T Consensus 221 ~VVVGGGPT--GVEFAaEL 237 (491)
T KOG2495|consen 221 FVVVGGGPT--GVEFAAEL 237 (491)
T ss_pred EEEECCCCc--ceeehHHH
Confidence 589999999 88777665
No 273
>PLN03034 phosphoglycerate kinase; Provisional
Probab=25.77 E-value=1.8e+02 Score=29.44 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=37.8
Q ss_pred CCcccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q 026370 87 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 135 (239)
Q Consensus 87 ~~~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV 135 (239)
+++-|||+|.+==|+-.++++...|..+|+.....|+.++++|.+++|+
T Consensus 89 dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gakvVl~ 137 (481)
T PLN03034 89 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILS 137 (481)
T ss_pred hcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCeEEEE
Confidence 3467899999766654433333468899999999999999999998864
No 274
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=25.71 E-value=88 Score=25.20 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=22.8
Q ss_pred HHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc
Q 026370 120 REVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (239)
Q Consensus 120 ~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r 155 (239)
+.|+++.++|++++||.|+-..+-. ..++.+|++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~-~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIE-PIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHH-HHHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHH-HHHHHcCCCc
Confidence 6667777889999999997443222 2334456554
No 275
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=25.68 E-value=2.7e+02 Score=25.84 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=44.9
Q ss_pred HHhCCceEEEEECCChhhhhh-hhhhh-cCCCccc-hhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcccccchH
Q 026370 125 VTRLGIEVAIVVGGGNIFRGA-SAAGN-SGLDRSS-ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIR 201 (239)
Q Consensus 125 l~~~G~~I~IV~GGGniaRg~-~~Ar~-~Gi~r~~-aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~ 201 (239)
|...+-+.+-++|-|..+|.+ ++... ..+.+.. .|+ +.-++..+...++.++++..+.
T Consensus 123 La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r-----~~~~~~~~~~~~~~~g~~v~~~-------------- 183 (325)
T TIGR02371 123 LARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR-----TPSTREKFALRASDYEVPVRAA-------------- 183 (325)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC-----CHHHHHHHHHHHHhhCCcEEEe--------------
Confidence 444444556677999999986 33222 1233332 111 1223333444444445443222
Q ss_pred HHHHHHHhCCCEEEEeCCCCCccccch
Q 026370 202 RRAVRHLEKGRVVIFAAGTGNPFFTTD 228 (239)
Q Consensus 202 ~ea~~~L~~G~IvVfagGtg~P~fTTD 228 (239)
....+++++-.|||.+.....|.|..+
T Consensus 184 ~~~~eav~~aDiVitaT~s~~P~~~~~ 210 (325)
T TIGR02371 184 TDPREAVEGCDILVTTTPSRKPVVKAD 210 (325)
T ss_pred CCHHHHhccCCEEEEecCCCCcEecHH
Confidence 134456667778887777777777543
No 276
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=25.67 E-value=1.2e+02 Score=30.24 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEe-CCCCCc------cccchHHHHHHhh
Q 026370 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFA-AGTGNP------FFTTDTAAALRCA 236 (239)
Q Consensus 169 NAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfa-gGtg~P------~fTTDt~AAlrA~ 236 (239)
-..-|..+.+.+|--..++-.+.++.--..|.++-++..-+.=.|||.| -|.|.| |--||+-|||.|-
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGsn~GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaAG 516 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGSNKGYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAAG 516 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCCCCCcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhhhcc
Confidence 3455666777777666777777777777778666555555556888887 788889 6689999998773
No 277
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=25.48 E-value=79 Score=23.00 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChh
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNI 141 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGni 141 (239)
..+.+.|+++.++|++++||.|+..-
T Consensus 27 ~~~~~~l~~l~~~g~~i~ivS~~~~~ 52 (139)
T cd01427 27 PGVKEALKELKEKGIKLALATNKSRR 52 (139)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCchHH
Confidence 44556666677779999999988744
No 278
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=25.26 E-value=2.7e+02 Score=24.92 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHH-hCCceEEEEECC---Chhhhhh---------hhhhhcCCCccchhHHHHHHHHHHHHHHHHH
Q 026370 110 IDPKITMAIAREVASVT-RLGIEVAIVVGG---GNIFRGA---------SAAGNSGLDRSSADYIGMLATVMNAIFLQAT 176 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~-~~G~~I~IV~GG---GniaRg~---------~~Ar~~Gi~r~~aD~IGMlAT~LNAllL~~a 176 (239)
+++...+++++.|.++. +.|.+-+|+.|| +. |.. +..++++..-...++ |. .+=+++.+|..+
T Consensus 87 i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~--~~~~v~~~at~~~~~~~l~~~~~~~~~-g~-i~G~~g~ll~~a 162 (238)
T TIGR00161 87 IPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVRE--KSQPVFGAANSQELIERLKDLIEIFPF-GN-LNGISGTLLTRC 162 (238)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCC--CCCcEEEEECCHHHHHHHHHhcCcCCC-CE-EechhHHHHHHH
Confidence 45667889999998887 477888889998 32 110 111111100000111 11 345566666655
Q ss_pred HHhcCCCceEEeccccCcccccchHHHHHHHHh
Q 026370 177 MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 209 (239)
Q Consensus 177 L~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~ 209 (239)
-.. |+++.++-+-..+..+++.-...+.+.|+
T Consensus 163 ~~~-gi~~i~Ll~et~~~~PDP~AA~~ll~~l~ 194 (238)
T TIGR00161 163 AVN-DIPAICLLAETLGPYPDPRAAASLVEVLN 194 (238)
T ss_pred HHc-CCCEEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 444 78876663323344555554444444443
No 279
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=25.20 E-value=85 Score=29.29 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=17.5
Q ss_pred ceEEEEECC---ChhhhhhhhhhhcC
Q 026370 130 IEVAIVVGG---GNIFRGASAAGNSG 152 (239)
Q Consensus 130 ~~I~IV~GG---GniaRg~~~Ar~~G 152 (239)
..+.||+|| .|.-|=++.+++.|
T Consensus 209 vD~miVVGg~nSsNT~rL~ei~~~~~ 234 (280)
T TIGR00216 209 VDLMIVIGGKNSSNTTRLYEIAEEHG 234 (280)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHhC
Confidence 679999999 77766677766555
No 280
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=25.18 E-value=1.5e+02 Score=21.65 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhCC-ceEEEEECCC
Q 026370 112 PKITMAIAREVASVTRLG-IEVAIVVGGG 139 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G-~~I~IV~GGG 139 (239)
.+.+..+-+.|.+..+.+ .++-||||-|
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G 37 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKG 37 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--ST
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 456677777777776655 5677999977
No 281
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=25.12 E-value=76 Score=25.38 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCceEEEEECC
Q 026370 116 MAIAREVASVTRLGIEVAIVVGG 138 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GG 138 (239)
.++.++|+++.++ ++++|+.||
T Consensus 46 ~~i~~~i~~~~~~-~DlvittGG 67 (133)
T cd00758 46 DSIRAALIEASRE-ADLVLTTGG 67 (133)
T ss_pred HHHHHHHHHHHhc-CCEEEECCC
Confidence 5566667766665 899999987
No 282
>PRK15482 transcriptional regulator MurR; Provisional
Probab=25.05 E-value=5e+02 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEECCCh
Q 026370 110 IDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~~~G~~I~IV~GGGn 140 (239)
+|.+.++++++.|.+. + + +.|+|-|.
T Consensus 120 id~~~l~~~~~~i~~A-~---~-I~i~G~G~ 145 (285)
T PRK15482 120 FDYARLQKIIEVISKA-P---F-IQITGLGG 145 (285)
T ss_pred cCHHHHHHHHHHHHhC-C---e-eEEEEeCh
Confidence 6778888888888652 1 3 55666553
No 283
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=25.04 E-value=1.4e+02 Score=27.57 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=28.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEEC
Q 026370 104 GDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 137 (239)
Q Consensus 104 ~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~G 137 (239)
++.....|++.+.++.+.++++.++|.-.+||.=
T Consensus 161 DEPTSALDPElv~EVL~vm~~LA~eGmTMivVTH 194 (240)
T COG1126 161 DEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTH 194 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3343448999999999999999999988887764
No 284
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=25.03 E-value=1.4e+02 Score=26.55 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCC-h-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
..++.+.++++.+.+.++. +..++++|+.|.| + +--|.++
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl 66 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDL 66 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCH
Confidence 3488999999999999875 4458899999977 4 5555554
No 285
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=25.01 E-value=47 Score=25.48 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=11.0
Q ss_pred eEEEEECCChhhhhh
Q 026370 131 EVAIVVGGGNIFRGA 145 (239)
Q Consensus 131 ~I~IV~GGGniaRg~ 145 (239)
+-++|+|||+.+...
T Consensus 8 ~~vlVvGgG~va~~k 22 (103)
T PF13241_consen 8 KRVLVVGGGPVAARK 22 (103)
T ss_dssp -EEEEEEESHHHHHH
T ss_pred CEEEEECCCHHHHHH
Confidence 457788999997664
No 286
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=24.91 E-value=3.1e+02 Score=27.48 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=49.9
Q ss_pred hCCceEEEEECCChhhhhh----------hhhhhcCCCccc-hh--HHHHHHHHHHHHHHHHHHHhcCCCceEEeccccC
Q 026370 127 RLGIEVAIVVGGGNIFRGA----------SAAGNSGLDRSS-AD--YIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 193 (239)
Q Consensus 127 ~~G~~I~IV~GGGniaRg~----------~~Ar~~Gi~r~~-aD--~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~ 193 (239)
..+++++||=|.|.++-+. ++|+.++++=.. .| ..++..+..-.+....+|++.+++..-+ =++
T Consensus 315 ~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GV---IlN 391 (476)
T PRK06278 315 NSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGI---ILN 391 (476)
T ss_pred hcCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEE---EEE
Confidence 3468999999988777762 566767776554 32 3444444333333445555445442111 124
Q ss_pred cccccchHHHHHHHHhCCCEEEE
Q 026370 194 EVAEPYIRRRAVRHLEKGRVVIF 216 (239)
Q Consensus 194 ~i~e~y~~~ea~~~L~~G~IvVf 216 (239)
++..+...+.+++++++-.|+|+
T Consensus 392 ~v~~~~~~~~~~~~le~~gvpVL 414 (476)
T PRK06278 392 KVYNMEIFEKVKKIAENSNINLI 414 (476)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEE
Confidence 44443445667778887679998
No 287
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=24.91 E-value=1.4e+02 Score=28.10 Aligned_cols=39 Identities=15% Similarity=0.414 Sum_probs=33.1
Q ss_pred eccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC
Q 026370 97 VSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (239)
Q Consensus 97 LGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG 138 (239)
++|-.+.... +..+.+..+.+.++++.+.|..|++++|+
T Consensus 46 iAGDlFd~~~---Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GN 84 (390)
T COG0420 46 IAGDLFDTNN---PSPRALKLFLEALRRLKDAGIPVVVIAGN 84 (390)
T ss_pred EccccccCCC---CCHHHHHHHHHHHHHhccCCCcEEEecCC
Confidence 5788775533 56899999999999998888999999998
No 288
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.89 E-value=86 Score=28.66 Aligned_cols=29 Identities=28% Similarity=0.643 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhCC----ceEEEEE-CCChh
Q 026370 113 KITMAIAREVASVTRLG----IEVAIVV-GGGNI 141 (239)
Q Consensus 113 ~~l~~iA~~I~~l~~~G----~~I~IV~-GGGni 141 (239)
+...++++.|+++.+.+ +.++|++ |||++
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 46788889998886543 7777554 77875
No 289
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=24.85 E-value=49 Score=30.96 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCEEEEeCCCCC
Q 026370 202 RRAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 202 ~ea~~~L~~G~IvVfagGtg~ 222 (239)
+.+.+.+++|++||++||+|-
T Consensus 84 ~~i~~i~~~gk~pIlvGGt~~ 104 (307)
T PRK00091 84 AAIADILARGKLPILVGGTGL 104 (307)
T ss_pred HHHHHHHhCCCCEEEECcHHH
Confidence 445567889999999999886
No 290
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=24.85 E-value=91 Score=28.81 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=34.5
Q ss_pred cEEEEEeccccccCCCCCC--CCHHHHHHHHHHHHHHHhC-CceEEEEECCChh
Q 026370 91 QRVLLKVSGEALAGDHTQN--IDPKITMAIAREVASVTRL-GIEVAIVVGGGNI 141 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~g--id~~~l~~iA~~I~~l~~~-G~~I~IV~GGGni 141 (239)
.-|||..|--+..+|.-.. +..+-..++.+.|+++... +.++++|.|||--
T Consensus 242 ~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~ 295 (311)
T PF00850_consen 242 DLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYN 295 (311)
T ss_dssp SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SS
T ss_pred cEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCC
Confidence 4699999999988774333 6688889999999887652 1288888888743
No 291
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=24.85 E-value=1.4e+02 Score=26.67 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEEECCC-h-hhhhhhh
Q 026370 109 NIDPKITMAIAREVASVTR-LGIEVAIVVGGG-N-IFRGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGG-n-iaRg~~~ 147 (239)
.++.+.++++.+.+.++.+ ...+++|+.|.| . +--|.++
T Consensus 26 al~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl 67 (259)
T TIGR01929 26 AFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQ 67 (259)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcCh
Confidence 4889999999999998763 457899999987 3 4455544
No 292
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=24.80 E-value=78 Score=29.49 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=18.0
Q ss_pred HHHHHHHhCCceEEEEECC---Chhhhhhhhhhhc
Q 026370 120 REVASVTRLGIEVAIVVGG---GNIFRGASAAGNS 151 (239)
Q Consensus 120 ~~I~~l~~~G~~I~IV~GG---GniaRg~~~Ar~~ 151 (239)
+++++|.++ ..++||+|| .|.-|=++.|++.
T Consensus 201 ~a~~~La~~-vD~miVIGg~~SsNT~kL~eia~~~ 234 (281)
T PF02401_consen 201 EAARELAKE-VDAMIVIGGKNSSNTRKLAEIAKEH 234 (281)
T ss_dssp HHHHHHHCC-SSEEEEES-TT-HHHHHHHHHHHHC
T ss_pred HHHHHHHhh-CCEEEEecCCCCccHHHHHHHHHHh
Confidence 444556555 789999997 4444444444433
No 293
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=24.74 E-value=2.1e+02 Score=26.69 Aligned_cols=139 Identities=18% Similarity=0.187 Sum_probs=75.6
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEECC--Chhhhhh--hhhhh-cCC----Cccchh
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLG-IEVAIVVGG--GNIFRGA--SAAGN-SGL----DRSSAD 159 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G-~~I~IV~GG--GniaRg~--~~Ar~-~Gi----~r~~aD 159 (239)
.+++.|=|||. ++.+.++.+..++++++|.++.+.. .++.|+.-- +.-+... +..+. -++ .+...-
T Consensus 146 ~p~~avLIGG~----s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nP 221 (311)
T PF06258_consen 146 RPRVAVLIGGD----SKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENP 221 (311)
T ss_pred CCeEEEEECcC----CCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCc
Confidence 57899999995 4446689999999999999998643 466666543 1111111 11100 011 112233
Q ss_pred HHHHHHH-------HHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCC--C-----CCccc
Q 026370 160 YIGMLAT-------VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG--T-----GNPFF 225 (239)
Q Consensus 160 ~IGMlAT-------~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagG--t-----g~P~f 225 (239)
+.|+++- .=-.=++..++-. |.|..++ .++. ......+-.....+.|.+-.|.|- . ..|.-
T Consensus 222 y~~~La~ad~i~VT~DSvSMvsEA~~t-G~pV~v~---~l~~-~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl~ 296 (311)
T PF06258_consen 222 YLGFLAAADAIVVTEDSVSMVSEAAAT-GKPVYVL---PLPG-RSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPLD 296 (311)
T ss_pred HHHHHHhCCEEEEcCccHHHHHHHHHc-CCCEEEe---cCCC-cchHHHHHHHHHHHCCCEEECCCcccccccccCCCcc
Confidence 8888875 1111123333333 6666665 2333 333223334444567888888433 1 44566
Q ss_pred cchHHHHHHhhh
Q 026370 226 TTDTAAALRCAE 237 (239)
Q Consensus 226 TTDt~AAlrA~E 237 (239)
-||.+|.+....
T Consensus 297 et~r~A~~i~~r 308 (311)
T PF06258_consen 297 ETDRVAAEIRER 308 (311)
T ss_pred HHHHHHHHHHHH
Confidence 788888776543
No 294
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=24.60 E-value=2.7e+02 Score=30.56 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCC
Q 026370 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD 154 (239)
Q Consensus 117 ~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~ 154 (239)
+..+.|+++.+.|++++++.|- +..-....|++.|+.
T Consensus 650 ~v~~aI~~l~~aGIkv~MiTGD-~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 650 ESAGAVEKCHQAGINVHMLTGD-FPETAKAIAQEVGII 686 (1053)
T ss_pred hHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHcCCC
Confidence 4667788888999999988885 222233566778874
No 295
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=24.59 E-value=84 Score=26.38 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=18.3
Q ss_pred HHHHHHHHHHH--hCCceEEEEECCChh
Q 026370 116 MAIAREVASVT--RLGIEVAIVVGGGNI 141 (239)
Q Consensus 116 ~~iA~~I~~l~--~~G~~I~IV~GGGni 141 (239)
+.+++.|.+.. ...-+|+|++|.||=
T Consensus 10 ~~~a~~i~~~~~~~~~~~v~il~G~GnN 37 (169)
T PF03853_consen 10 RAIAELIRKLFGSPKGPRVLILCGPGNN 37 (169)
T ss_dssp HHHHHHHHHHSTCCTT-EEEEEE-SSHH
T ss_pred HHHHHHHHHHhcccCCCeEEEEECCCCC
Confidence 56677777777 556799999999875
No 296
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=24.56 E-value=3.8e+02 Score=21.99 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEECCCh
Q 026370 110 IDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~~~G~~I~IV~GGGn 140 (239)
+|.+.++++++.|.+ . .+ +.+.|-|.
T Consensus 15 l~~~~~~~~~~~l~~---a-~~-I~i~G~G~ 40 (179)
T TIGR03127 15 IDEEELDKLADKIIK---A-KR-IFVAGAGR 40 (179)
T ss_pred CCHHHHHHHHHHHHh---C-CE-EEEEecCH
Confidence 677888888888865 2 24 55566554
No 297
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=24.47 E-value=52 Score=27.32 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=22.8
Q ss_pred eEEEEECCChhhhhh-hhhhhcCCCccchh
Q 026370 131 EVAIVVGGGNIFRGA-SAAGNSGLDRSSAD 159 (239)
Q Consensus 131 ~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD 159 (239)
..++|.|+|+...|. +.++.+|......|
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d 50 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPD 50 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEecc
Confidence 357788999999997 77788998888777
No 298
>PRK13984 putative oxidoreductase; Provisional
Probab=24.44 E-value=79 Score=31.50 Aligned_cols=12 Identities=25% Similarity=0.205 Sum_probs=9.8
Q ss_pred cccEEEEEeccc
Q 026370 89 KWQRVLLKVSGE 100 (239)
Q Consensus 89 ~~krIVIKLGGs 100 (239)
.|..+||..|..
T Consensus 368 ~yD~vilAtGa~ 379 (604)
T PRK13984 368 KHDAVFLSTGFT 379 (604)
T ss_pred cCCEEEEEcCcC
Confidence 388999998864
No 299
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=24.43 E-value=1.3e+02 Score=26.61 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=38.3
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccc
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS 157 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~ 157 (239)
+|--+=+|||+ +++ -.+.+.|++... ..+++|+.|=|||+-..++- ++|..+..
T Consensus 55 ayAvvDlkL~~----gsG---------L~~i~~lr~~~~-d~rivvLTGy~sIATAV~Av-KlGA~~YL 108 (182)
T COG4567 55 AYAVVDLKLGD----GSG---------LAVIEALRERRA-DMRIVVLTGYASIATAVEAV-KLGACDYL 108 (182)
T ss_pred ceEEEEeeecC----CCc---------hHHHHHHHhcCC-cceEEEEecchHHHHHHHHH-Hhhhhhhc
Confidence 47667789988 332 245556666433 37999999999999988765 57876665
No 300
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=24.38 E-value=1.7e+02 Score=27.74 Aligned_cols=13 Identities=0% Similarity=0.301 Sum_probs=11.1
Q ss_pred cccEEEEEecccc
Q 026370 89 KWQRVLLKVSGEA 101 (239)
Q Consensus 89 ~~krIVIKLGGsa 101 (239)
.|..+||..|...
T Consensus 113 ~yD~LViAtGs~~ 125 (424)
T PTZ00318 113 PYDKLVVAHGARP 125 (424)
T ss_pred cCCEEEECCCccc
Confidence 5999999998874
No 301
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=24.38 E-value=53 Score=29.61 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEECCChhhhhhhhhhhcCCCccchh
Q 026370 133 AIVVGGGNIFRGASAAGNSGLDRSSAD 159 (239)
Q Consensus 133 ~IV~GGGniaRg~~~Ar~~Gi~r~~aD 159 (239)
+|.+||||.++-.+.-++.|+++...+
T Consensus 82 ~I~v~GGnt~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 82 AIFVGGGNTFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred EEEECCccHHHHHHHHHHCCcHHHHHH
Confidence 788899999998755577888876644
No 302
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=24.36 E-value=2e+02 Score=23.46 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHH--hcCCCceEEeccccCcccccchHHHHHHHHhCC--CEEEEeCCCCCccccchHHHHH
Q 026370 165 ATVMNAIFLQATME--SIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKG--RVVIFAAGTGNPFFTTDTAAAL 233 (239)
Q Consensus 165 AT~LNAllL~~aL~--~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G--~IvVfagGtg~P~fTTDt~AAl 233 (239)
-+.-.+.++...|+ ...+....+|-+...+-.+|++.+.+.+..++| +|+|+ -|+|.+|-.-.+
T Consensus 42 ~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~-----p~gF~~D~~Etl 109 (135)
T cd00419 42 QCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVV-----PIGFVSDHLETL 109 (135)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE-----CCccccccHHHH
Confidence 33445556666554 212323333444445677888778777877876 67776 346998866554
No 303
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=24.33 E-value=1.4e+02 Score=29.09 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc-h-HHHHHHHHhCCCEEEEeCCCCC
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY-I-RRRAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y-~-~~ea~~~L~~G~IvVfagGtg~ 222 (239)
-|+.+|.+.|++.|.+..-+ ..+.++. . .+.+.+++++..++|..||++.
T Consensus 220 sN~~~L~a~l~~~G~~v~~~-----~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S~ 271 (419)
T PRK14690 220 ANRPMLLALARRWGHAPVDL-----GRVGDDRAALAARLDRAAAEADVILTSGGASA 271 (419)
T ss_pred CHHHHHHHHHHHCCCEEEEE-----eeeCCCHHHHHHHHHHhCccCCEEEEcCCccC
Confidence 59999999999999764333 2233333 1 2333345566789998766554
No 304
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=24.29 E-value=2.2e+02 Score=27.41 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=16.7
Q ss_pred eEEEEECCChhhhhh-hhhhhcCCCcc
Q 026370 131 EVAIVVGGGNIFRGA-SAAGNSGLDRS 156 (239)
Q Consensus 131 ~I~IV~GGGniaRg~-~~Ar~~Gi~r~ 156 (239)
+-++|+|.|.+.+.. ...+..|+.+.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V 207 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKI 207 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEE
Confidence 446678999997775 44444665443
No 305
>PRK10976 putative hydrolase; Provisional
Probab=24.28 E-value=1.8e+02 Score=25.21 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=29.6
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG 138 (239)
+|.|++-|=|=.|..++ .+.+ +..+.|+++.++|++++|..|=
T Consensus 2 ikli~~DlDGTLl~~~~--~is~----~~~~ai~~l~~~G~~~~iaTGR 44 (266)
T PRK10976 2 YQVVASDLDGTLLSPDH--TLSP----YAKETLKLLTARGIHFVFATGR 44 (266)
T ss_pred ceEEEEeCCCCCcCCCC--cCCH----HHHHHHHHHHHCCCEEEEEcCC
Confidence 35677777777665433 2443 3456788888899999999884
No 306
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=24.19 E-value=1.6e+02 Score=26.69 Aligned_cols=39 Identities=5% Similarity=0.101 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEEECCC---hhhhhhhh
Q 026370 109 NIDPKITMAIAREVASVTR-LGIEVAIVVGGG---NIFRGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGG---niaRg~~~ 147 (239)
.++.+.+.++.+.+.++.+ ...+++|+.|+| .+--|.++
T Consensus 34 al~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl 76 (278)
T PLN03214 34 SMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDI 76 (278)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCH
Confidence 4889999999999998863 457999999976 46666655
No 307
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.03 E-value=1.3e+02 Score=24.93 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhCCc-eEEEEECCChh------hhhhhhhhhcCCCccch
Q 026370 112 PKITMAIAREVASVTRLGI-EVAIVVGGGNI------FRGASAAGNSGLDRSSA 158 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~-~I~IV~GGGni------aRg~~~Ar~~Gi~r~~a 158 (239)
.+.++++.+.|++ .|. .+-|++||+-. .......+++|+++...
T Consensus 64 ~~~~~~~~~~l~~---~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 64 EIDCKGLREKCDE---AGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFA 114 (128)
T ss_pred HHHHHHHHHHHHH---CCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEEC
Confidence 3566666666654 454 55566666421 11223346778776653
No 308
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=24.00 E-value=1.4e+02 Score=29.02 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc-h-HHHHHHHHhCCCEEEEeCCCCCc--cccchHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY-I-RRRAVRHLEKGRVVIFAAGTGNP--FFTTDTA 230 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y-~-~~ea~~~L~~G~IvVfagGtg~P--~fTTDt~ 230 (239)
-|+.+|.+.|+..|+....+ +-+.++. . .+.+.++.++..++|+.||++.= .|+-++.
T Consensus 204 sn~~~l~a~l~~~G~~~~~~-----~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S~G~~D~~~~al 265 (411)
T PRK10680 204 TNRLAVHLMLEQLGCEVINL-----GIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTIL 265 (411)
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeCCCHHHHHHHHHHhccCCCEEEEcCCCCCCCcchHHHHH
Confidence 68999999999998764333 1233433 1 12222334557899987776542 4555543
No 309
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=24.00 E-value=1.5e+02 Score=26.22 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCC--hhhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGG--NIFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGG--niaRg~~~ 147 (239)
..++.+.+.++.+.+.++. +...+++|+.|.| .+--|.++
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl 68 (260)
T PRK07657 26 NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADL 68 (260)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcCh
Confidence 3489999999999999876 3558999999977 35556554
No 310
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=23.99 E-value=1.1e+02 Score=29.19 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=41.6
Q ss_pred cccEEEEEeccccccCCC--CCCCC---HHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccch---h
Q 026370 89 KWQRVLLKVSGEALAGDH--TQNID---PKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSA---D 159 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~--~~gid---~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~a---D 159 (239)
.|..+||..|.......- +..+. .+....+.+.+.+ ..+-+ ++|+|||.+.-.. ...+++|.+=..- +
T Consensus 105 ~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~-vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 105 SYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKA--NQVDK-ALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred ecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhh--cCCCE-EEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 488999998887533221 11111 2222233333322 12224 5677999984442 2223455432222 2
Q ss_pred HHH-HHHHHHHHHHHHHHHHhcCCC
Q 026370 160 YIG-MLATVMNAIFLQATMESIGIP 183 (239)
Q Consensus 160 ~IG-MlAT~LNAllL~~aL~~~gi~ 183 (239)
++. ..--.+. ..+...|++.|++
T Consensus 182 ~l~~~~d~~~~-~~l~~~l~~~gI~ 205 (438)
T PRK13512 182 KINKLMDADMN-QPILDELDKREIP 205 (438)
T ss_pred ccchhcCHHHH-HHHHHHHHhcCCE
Confidence 221 1111222 3455667777764
No 311
>PLN02282 phosphoglycerate kinase
Probab=23.82 E-value=1.9e+02 Score=28.48 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=35.4
Q ss_pred CcccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q 026370 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 135 (239)
Q Consensus 88 ~~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV 135 (239)
.+-|||+|.+==|+=..+.+...|..+++.....|+.++++|.+++|+
T Consensus 15 ~~gK~VlvRvD~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gakvVl~ 62 (401)
T PLN02282 15 LKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILC 62 (401)
T ss_pred ccCCEEEEEeecCCccCCCCcccCcHHHHHHHHHHHHHHHCCCeEEEE
Confidence 356788888755543323233467889999999999999999997765
No 312
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=23.77 E-value=84 Score=27.36 Aligned_cols=34 Identities=18% Similarity=0.526 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh
Q 026370 109 NIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF 142 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia 142 (239)
.++.+.++++.+.|.++.+ ..++++|+.|+|+.|
T Consensus 21 ~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F 55 (245)
T PF00378_consen 21 ALNPEMLDELEEALDEAEADPDVKVVVISGGGKAF 55 (245)
T ss_dssp EBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSES
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccEEEEeeccccc
Confidence 4889999999999999865 446778887877665
No 313
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=23.76 E-value=1.6e+02 Score=30.13 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCC
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTG 221 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg 221 (239)
-|..+|.+.+++.|.....+ +-+.+++ ..+.+.+++++..++|..||++
T Consensus 206 sNs~~L~a~l~~~G~~v~~~-----~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS 256 (546)
T PRK14497 206 SNLHYLYSKLKSEGYKIVGL-----SLLSDDKESIKNEIKRAISVADVLILTGGTS 256 (546)
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 68999999999988764332 2344444 1233444566778999977664
No 314
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.73 E-value=72 Score=28.19 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.3
Q ss_pred Chhhhhh-hhhhhcCCCccchh
Q 026370 139 GNIFRGA-SAAGNSGLDRSSAD 159 (239)
Q Consensus 139 GniaRg~-~~Ar~~Gi~r~~aD 159 (239)
|+++|.. ++|++|--|+....
T Consensus 73 g~L~raavelaKdwr~Dk~lr~ 94 (178)
T COG5405 73 GDLFRAAVELAKDWRTDKYLRK 94 (178)
T ss_pred CcHHHHHHHHHHhhhhhhHHHH
Confidence 8899986 88888886666554
No 315
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.73 E-value=1.7e+02 Score=28.01 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=38.4
Q ss_pred cEEEEEeccccccCCC--CCCCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh
Q 026370 91 QRVLLKVSGEALAGDH--TQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF 142 (239)
Q Consensus 91 krIVIKLGGsaL~~d~--~~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia 142 (239)
.-||+..|.-+..+|. ...+..+...++.+.|.++.. .+++++.|.|||--.
T Consensus 241 dlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~ 295 (340)
T COG0123 241 DLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNL 295 (340)
T ss_pred CEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCh
Confidence 3799999999988773 223557888888888887754 256889898887553
No 316
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=23.50 E-value=1.8e+02 Score=25.43 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=29.2
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECC
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 138 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GG 138 (239)
+|-+++-|=|=.|..++ .++. +..+.|+++.++|++++|+.|=
T Consensus 2 ~kli~~DlDGTLl~~~~--~i~~----~~~~ai~~l~~~G~~~~iaTGR 44 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDH--HLGE----KTLSTLARLRERDITLTFATGR 44 (272)
T ss_pred ccEEEEeCCCcCcCCCC--cCCH----HHHHHHHHHHHCCCEEEEECCC
Confidence 35677777787665443 2443 3456677777889999999874
No 317
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=23.16 E-value=1.1e+02 Score=30.74 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=20.0
Q ss_pred hhcCCCccchhHHHHHHHHHHHHHHHHHH
Q 026370 149 GNSGLDRSSADYIGMLATVMNAIFLQATM 177 (239)
Q Consensus 149 r~~Gi~r~~aD~IGMlAT~LNAllL~~aL 177 (239)
+++|++....+.+|+.+|..--..|...+
T Consensus 270 er~GiP~~~~~~~Gi~~Td~~Lr~la~~~ 298 (513)
T TIGR01861 270 KRYGIPRLDIDGFGFEPLAASLRKVAMFF 298 (513)
T ss_pred HHhCCCeEecCcCCHHHHHHHHHHHHHHh
Confidence 46788877777788888865555555554
No 318
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.10 E-value=1.9e+02 Score=26.03 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=36.2
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchh
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD 159 (239)
++|+|=.||+ +. +++.+++.++.= ....+|+.|+=.=.-+-+-+.|++.|++....|
T Consensus 1 ~ki~VlaSG~---GS--------Nlqaiida~~~~-~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~ 57 (200)
T COG0299 1 KKIAVLASGN---GS--------NLQAIIDAIKGG-KLDAEIVAVISDKADAYALERAAKAGIPTVVLD 57 (200)
T ss_pred CeEEEEEeCC---cc--------cHHHHHHHHhcC-CCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEec
Confidence 3566666776 22 456777777631 123688888877555556677888888865544
No 319
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=23.09 E-value=60 Score=29.70 Aligned_cols=49 Identities=22% Similarity=0.378 Sum_probs=34.3
Q ss_pred CCCCc-ccEEEEEeccccccCCCCCCCCHH-----------------------HHHHHHHHHHHHHhCCceEEEE
Q 026370 85 KPSYK-WQRVLLKVSGEALAGDHTQNIDPK-----------------------ITMAIAREVASVTRLGIEVAIV 135 (239)
Q Consensus 85 ~~~~~-~krIVIKLGGsaL~~d~~~gid~~-----------------------~l~~iA~~I~~l~~~G~~I~IV 135 (239)
+|.+. |+|||-..|+|+|-.++. +|-+ .=+++.+++.++.-.||+++|+
T Consensus 40 ~PG~p~~~~ive~FG~eiLl~~G~--inR~~LG~~vF~~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivl 112 (225)
T KOG3220|consen 40 EPGTPAYRRIVEAFGTEILLEDGE--INRKVLGKRVFSDPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVL 112 (225)
T ss_pred cCCChHHHHHHHHhCceeeccCCc--ccHHHHhHHHhCCHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 55545 999999999998776543 3433 2345667777777789998866
No 320
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=23.03 E-value=1.1e+02 Score=26.23 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=48.8
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchh---HHHHHHH
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSAD---YIGMLAT 166 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD---~IGMlAT 166 (239)
-+-|||.+.+ .|-+.....++.+.|+++.+.+..++-.+-|-..--|+.+| ...|...+. .+|....
T Consensus 35 i~~ivl~~~s--------~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA--~aaD~i~a~~~s~~g~iG~ 104 (208)
T cd07023 35 VKAVVLRINS--------PGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYYIA--AAADKIVANPTTITGSIGV 104 (208)
T ss_pred CcEEEEEEEC--------CCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHH--hhCCEEEECCCCeEEeCcE
Confidence 4567777631 12344455667777777665444554333332222345454 234444433 2333333
Q ss_pred HHHHHHHHHHHHhcCCCceEEe
Q 026370 167 VMNAIFLQATMESIGIPTRVQT 188 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~S 188 (239)
.+..+.+..+|+++|++..++.
T Consensus 105 ~~~~~~~~~~l~k~Gi~~~~~~ 126 (208)
T cd07023 105 IGQGPNLEELLDKLGIERDTIK 126 (208)
T ss_pred EEecCCHHHHHHhcCCceEEEe
Confidence 4455568899999999988874
No 321
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.87 E-value=1.2e+02 Score=27.27 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCC
Q 026370 167 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGT 220 (239)
Q Consensus 167 ~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGt 220 (239)
-+...-+...++++|+...+++.+.-......|+.+-+.+..+.-.++|.|+||
T Consensus 143 ~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGG 196 (241)
T PRK14114 143 EIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGG 196 (241)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECC
Confidence 334455566677778888888877777777777777777777766777776554
No 322
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.77 E-value=2.6e+02 Score=29.53 Aligned_cols=58 Identities=26% Similarity=0.444 Sum_probs=33.2
Q ss_pred EEEEecccccc----CCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccch
Q 026370 93 VLLKVSGEALA----GDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA 158 (239)
Q Consensus 93 IVIKLGGsaL~----~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~a 158 (239)
+.+...|+.+. .|. +. .+..+.|++|.+.|.++++..|= |--.....|+++|+++..+
T Consensus 520 v~va~dg~~~g~i~~~D~---~R----~~a~~aI~~L~~~Gi~~~mLTGD-n~~~A~~iA~~lGId~v~A 581 (713)
T COG2217 520 VFVAVDGKLVGVIALADE---LR----PDAKEAIAALKALGIKVVMLTGD-NRRTAEAIAKELGIDEVRA 581 (713)
T ss_pred EEEEECCEEEEEEEEeCC---CC----hhHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHHcChHhhec
Confidence 66777886543 233 22 45567778888889998877772 2211123445555544433
No 323
>PLN02887 hydrolase family protein
Probab=22.70 E-value=1.8e+02 Score=29.83 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=33.9
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCC
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 139 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGG 139 (239)
++|.|++-|=|=.|..++ .+.. +..+.|+++.++|++++|..|=.
T Consensus 307 ~iKLIa~DLDGTLLn~d~--~Is~----~t~eAI~kl~ekGi~~vIATGR~ 351 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKS--QISE----TNAKALKEALSRGVKVVIATGKA 351 (580)
T ss_pred CccEEEEeCCCCCCCCCC--ccCH----HHHHHHHHHHHCCCeEEEEcCCC
Confidence 588899999999776543 2443 34577888889999999999853
No 324
>PLN02600 enoyl-CoA hydratase
Probab=22.67 E-value=1.7e+02 Score=25.91 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEECC-Ch-hhhhhhh
Q 026370 108 QNIDPKITMAIAREVASVTR-LGIEVAIVVGG-GN-IFRGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GG-Gn-iaRg~~~ 147 (239)
..++.+.++++.+.+.++.+ ..++++|+.|+ |+ +--|.++
T Consensus 17 Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl 59 (251)
T PLN02600 17 NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADL 59 (251)
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCH
Confidence 34889999999999988753 45789999986 44 5555554
No 325
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.62 E-value=1.3e+02 Score=27.71 Aligned_cols=34 Identities=12% Similarity=0.417 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHH-hCC---------ceEEEEECC-Chhhhhhhh
Q 026370 114 ITMAIAREVASVT-RLG---------IEVAIVVGG-GNIFRGASA 147 (239)
Q Consensus 114 ~l~~iA~~I~~l~-~~G---------~~I~IV~GG-GniaRg~~~ 147 (239)
...+++++|+++. +.| .+++||+|| |.++|....
T Consensus 14 ~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGDGT~L~a~~~ 58 (264)
T PRK03501 14 ELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSIGGDGTFLQAVRK 58 (264)
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEECCcHHHHHHHHH
Confidence 3345566666533 333 358999999 999888643
No 326
>PRK13946 shikimate kinase; Provisional
Probab=22.62 E-value=1.9e+02 Score=24.17 Aligned_cols=31 Identities=29% Similarity=0.240 Sum_probs=20.8
Q ss_pred ceEEEEECC---ChhhhhhhhhhhcCCCccchhH
Q 026370 130 IEVAIVVGG---GNIFRGASAAGNSGLDRSSADY 160 (239)
Q Consensus 130 ~~I~IV~GG---GniaRg~~~Ar~~Gi~r~~aD~ 160 (239)
.+.++++|. |..--+..+|+.+|++-...|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 356677775 6666666777777877666664
No 327
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=22.58 E-value=1.3e+02 Score=27.93 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh
Q 026370 110 IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~ 145 (239)
.+.+.++++++++++.--....++|.+|||....-.
T Consensus 62 ~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~a 97 (344)
T TIGR01357 62 KSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLA 97 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHH
Confidence 346778888877776421224799999999986654
No 328
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=22.50 E-value=1e+02 Score=29.03 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=22.9
Q ss_pred HHHHHhCCceEEEEECC---ChhhhhhhhhhhcCCC
Q 026370 122 VASVTRLGIEVAIVVGG---GNIFRGASAAGNSGLD 154 (239)
Q Consensus 122 I~~l~~~G~~I~IV~GG---GniaRg~~~Ar~~Gi~ 154 (239)
+++|.++ ..+.||+|| .|.-|=++.+++.|.+
T Consensus 204 ~~~La~~-vD~miVVGg~~SsNT~kL~~i~~~~~~~ 238 (298)
T PRK01045 204 VKELAPQ-ADLVIVVGSKNSSNSNRLREVAEEAGAP 238 (298)
T ss_pred HHHHHhh-CCEEEEECCCCCccHHHHHHHHHHHCCC
Confidence 3344443 689999999 8887777777776643
No 329
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=22.49 E-value=1.8e+02 Score=25.81 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh-hhhhh
Q 026370 108 QNIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 108 ~gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia-Rg~~~ 147 (239)
..++.+.+.++.+.+.++. +...+++|+.|.|..| =|.++
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl 63 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASV 63 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcCh
Confidence 3489999999999999876 3457888899987654 33443
No 330
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=22.39 E-value=1.8e+02 Score=28.50 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCC
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~ 222 (239)
-|..+|.+.+++.|.....+ +-+.+++ ..+.+.+++++-.++|..||..-
T Consensus 203 sN~~~l~a~l~~~G~e~~~~-----giv~Dd~~~l~~~i~~a~~~~DviItsGG~Sv 254 (404)
T COG0303 203 SNSYMLAALLERAGGEVVDL-----GIVPDDPEALREAIEKALSEADVIITSGGVSV 254 (404)
T ss_pred cCHHHHHHHHHHcCCceeec-----cccCCCHHHHHHHHHHhhhcCCEEEEeCCccC
Confidence 68999999999998754433 3445544 34455566666788888666543
No 331
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=22.28 E-value=2.2e+02 Score=28.74 Aligned_cols=47 Identities=23% Similarity=0.214 Sum_probs=34.1
Q ss_pred cEEEEEeccccccCCCCCCCC--HHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh
Q 026370 91 QRVLLKVSGEALAGDHTQNID--PKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid--~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~ 145 (239)
+..+|+++|..-.- +| ...+++.....+...++|. ||.|||......
T Consensus 359 ~~~tI~vrgate~~-----ldE~er~i~DAL~~~~~ave~g~---iV~GGGa~e~~~ 407 (524)
T COG0459 359 GVATILVRGATEVE-----LDEKERRIEDALNVVRAAVEEGK---IVPGGGAAEIEA 407 (524)
T ss_pred CeEEEEECCccHhH-----HHHHHHHHHHHHHHHHHHHhcCC---eEeCCCHHHHHH
Confidence 56889999984321 12 4567777778888777754 899999997764
No 332
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.25 E-value=5e+02 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEECCChh
Q 026370 112 PKITMAIAREVASVTRLGIEVAIVVGGGNI 141 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~~I~IV~GGGni 141 (239)
.+.+.+.++.|.+...+|.+|. +.|.|.-
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~-~~G~GgS 52 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKIL-CCGNGTS 52 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEE-EEECcHH
Confidence 3678999999998888877765 5577654
No 333
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=22.22 E-value=1.6e+02 Score=29.71 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc--hHHHHHHHHhCCCEEEEeCCCCCc--cccchHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTGNP--FFTTDTA 230 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y--~~~ea~~~L~~G~IvVfagGtg~P--~fTTDt~ 230 (239)
-|+.+|.+.|+..|+...-+ +-+.++. ..+.+.++++.-.++|+.||++.= .++-|++
T Consensus 213 sn~~~l~~~l~~~g~~~~~~-----~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s~g~~D~~~~~l 274 (633)
T PRK14498 213 VNSYTLAAAVEEAGGEPVRY-----GIVPDDEEELEAALRKALKECDLVLLSGGTSAGAGDVTYRVI 274 (633)
T ss_pred ChHHHHHHHHHHCCCEEEEE-----EEeCCCHHHHHHHHHHHHhcCCEEEECCCCcCCCcccHHHHH
Confidence 48888899999988753222 2344444 233344555667899997776532 4444433
No 334
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=22.21 E-value=96 Score=25.83 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCccccchHHHHHHhhhc
Q 026370 201 RRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 238 (239)
Q Consensus 201 ~~ea~~~L~~G~IvVfagGtg~P~fTTDt~AAlrA~Ei 238 (239)
.+|++.+|++|-.|+ |.. +--||||.|+
T Consensus 12 HkEIL~Al~~Gv~V~---Gas-------SMGALRAaEl 39 (120)
T PF07812_consen 12 HKEILWALSQGVRVF---GAS-------SMGALRAAEL 39 (120)
T ss_pred HHHHHHHHHCCCEEE---ecc-------cHHHHHHHHh
Confidence 589999999996665 433 4669999986
No 335
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=22.17 E-value=1.2e+02 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh
Q 026370 110 IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~ 145 (239)
.+.+.+.++++++++ .+...+|-+|||....-.
T Consensus 62 p~~~~v~~~~~~~~~---~~~d~IIaiGGGs~~D~a 94 (332)
T cd07766 62 PTFEEVKEAVERARA---AEVDAVIAVGGGSTLDTA 94 (332)
T ss_pred cCHHHHHHHHHHHHh---cCcCEEEEeCCchHHHHH
Confidence 356788888888776 357899999999987665
No 336
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=22.16 E-value=1.8e+02 Score=26.06 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCceEEEEECCChhh-hhhhh
Q 026370 109 NIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIF-RGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGGnia-Rg~~~ 147 (239)
.++.+.+.++.+.+.++.+ ...+++|+.|.|..| -|.++
T Consensus 35 al~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl 75 (268)
T PRK07327 35 AADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDL 75 (268)
T ss_pred CCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCH
Confidence 4889999999999998763 457899999987543 44444
No 337
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=22.15 E-value=4.6e+02 Score=28.06 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCc
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR 155 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r 155 (239)
.+..+.|+++.+.|++++++.|-- ..-....|++.|+.+
T Consensus 540 ~~v~e~I~~l~~aGI~v~miTGD~-~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 540 PEVADAIEKCRTAGIRVIMITGDN-KETAEAICRRIGIFS 578 (917)
T ss_pred hhHHHHHHHHHHCCCEEEEecCCC-HHHHHHHHHHcCCCC
Confidence 466777888889999999999853 222335667788854
No 338
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=22.13 E-value=5.9e+02 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=12.6
Q ss_pred HHHHHHhCCCEEEEeCCCCCccccc
Q 026370 203 RAVRHLEKGRVVIFAAGTGNPFFTT 227 (239)
Q Consensus 203 ea~~~L~~G~IvVfagGtg~P~fTT 227 (239)
++.+.+.+-..++| +||++++-+
T Consensus 75 ~~~~~l~~ad~I~~--~GGnq~~l~ 97 (250)
T TIGR02069 75 NAIALLSNATGIFF--TGGDQLRIT 97 (250)
T ss_pred HHHHHHhhCCEEEE--eCCCHHHHH
Confidence 34555666666666 555554433
No 339
>PRK08139 enoyl-CoA hydratase; Validated
Probab=22.11 E-value=1.6e+02 Score=26.32 Aligned_cols=34 Identities=12% Similarity=0.371 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEEECCChhh
Q 026370 109 NIDPKITMAIAREVASVT-RLGIEVAIVVGGGNIF 142 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~-~~G~~I~IV~GGGnia 142 (239)
.++.+.++++.+.+.++. +..++++|+.|.|..|
T Consensus 34 al~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F 68 (266)
T PRK08139 34 ALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAF 68 (266)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc
Confidence 488999999999999875 3457899999988654
No 340
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=22.05 E-value=1.5e+02 Score=25.84 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=38.1
Q ss_pred ccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCc
Q 026370 90 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDR 155 (239)
Q Consensus 90 ~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r 155 (239)
+|.+++-+=|=.|..+.. + -.+..+.|+++.++|++++|+.|.-- +.. +..++++++.
T Consensus 3 ~kli~~DlDGTLl~~~~~--i----~~~~~~al~~~~~~g~~v~iaTGR~~--~~~~~~~~~l~~~~ 61 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT--I----SPETKEALARLREKGVKVVLATGRPL--PDVLSILEELGLDG 61 (264)
T ss_pred eeEEEEcCCCCccCCCCc--c----CHHHHHHHHHHHHCCCEEEEECCCCh--HHHHHHHHHcCCCc
Confidence 567888888886655442 2 25556666777789999999988533 332 4445566653
No 341
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=21.94 E-value=1e+02 Score=29.29 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=24.2
Q ss_pred HHHHHHhCCceEEEEECC---ChhhhhhhhhhhcCCCcc
Q 026370 121 EVASVTRLGIEVAIVVGG---GNIFRGASAAGNSGLDRS 156 (239)
Q Consensus 121 ~I~~l~~~G~~I~IV~GG---GniaRg~~~Ar~~Gi~r~ 156 (239)
.++++..+ .+++||+|| .|.-|=++.|++.|.+..
T Consensus 205 Avk~la~~-~Dl~iVVG~~nSSNs~rL~eiA~~~g~~ay 242 (294)
T COG0761 205 AVKELAPE-VDLVIVVGSKNSSNSNRLAEIAKRHGKPAY 242 (294)
T ss_pred HHHHHhhc-CCEEEEECCCCCccHHHHHHHHHHhCCCeE
Confidence 34555554 789999999 777677777776665433
No 342
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=21.89 E-value=1e+02 Score=26.83 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCEEEEe
Q 026370 201 RRRAVRHLEKGRVVIFA 217 (239)
Q Consensus 201 ~~ea~~~L~~G~IvVfa 217 (239)
++++.+.+++.+.+|+|
T Consensus 135 ~~~~i~~iN~~~~~vlA 151 (205)
T TIGR00197 135 FKTIVESINELPAPIVS 151 (205)
T ss_pred HHHHHHHHHhCCCCeEE
Confidence 47888888887777877
No 343
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=21.84 E-value=2.1e+02 Score=24.65 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=20.1
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 135 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV 135 (239)
|||+|-++|++=. -+..+.++.|.+.|++|-+|
T Consensus 2 k~Ill~vtGsiaa------------~~~~~li~~L~~~g~~V~vv 34 (182)
T PRK07313 2 KNILLAVSGSIAA------------YKAADLTSQLTKRGYQVTVL 34 (182)
T ss_pred CEEEEEEeChHHH------------HHHHHHHHHHHHCCCEEEEE
Confidence 6899999998422 22344445555667776443
No 344
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=21.57 E-value=1e+02 Score=27.50 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhC--CceEEEEECCChh-hhhhhhhhhcC-CC-ccc----h--hHHHHHHHHHHHHHHHH--HHHhcCC
Q 026370 116 MAIAREVASVTRL--GIEVAIVVGGGNI-FRGASAAGNSG-LD-RSS----A--DYIGMLATVMNAIFLQA--TMESIGI 182 (239)
Q Consensus 116 ~~iA~~I~~l~~~--G~~I~IV~GGGni-aRg~~~Ar~~G-i~-r~~----a--D~IGMlAT~LNAllL~~--aL~~~gi 182 (239)
+.+++.+.+.... +.+|.|++|.||= -.|+-+||.+. .. ... . ..+.-.+-+.|...+.. .++-...
T Consensus 34 ~aVa~~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~ 113 (203)
T COG0062 34 LAVARAILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKEL 113 (203)
T ss_pred HHHHHHHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeeccc
Confidence 3455666665555 5679999998764 34454554432 11 111 1 12233444455433332 1111111
Q ss_pred C------ceEEecccc----CcccccchHHHHHHHHhCCCEEEEe
Q 026370 183 P------TRVQTAFRM----SEVAEPYIRRRAVRHLEKGRVVIFA 217 (239)
Q Consensus 183 ~------a~v~SAi~i----~~i~e~y~~~ea~~~L~~G~IvVfa 217 (239)
+ ..++.|+.= +.+-++| ..+.+.+++..++|+|
T Consensus 114 ~~~~~~~dvIVDalfG~G~~g~lrep~--a~~Ie~iN~~~~pivA 156 (203)
T COG0062 114 EDEPESADVIVDALFGTGLSGPLREPF--ASLIEAINASGKPIVA 156 (203)
T ss_pred ccccccCCEEEEeceecCCCCCCccHH--HHHHHHHHhcCCceEE
Confidence 1 233344432 3466666 7888888877777775
No 345
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=21.54 E-value=2.2e+02 Score=24.78 Aligned_cols=91 Identities=11% Similarity=0.171 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhC--CceEEEEECCChhhhhh-hhhhhcCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEeccccC
Q 026370 117 AIAREVASVTRL--GIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 193 (239)
Q Consensus 117 ~iA~~I~~l~~~--G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~ 193 (239)
.+.+.++.+.++ .+++. ++|.|...... +.+++.++++.. ...|. -..+.. .+.. ....++++.
T Consensus 209 ~li~a~~~l~~~~~~~~l~-ivG~g~~~~~~~~~~~~~~~~~~v-~~~g~-~~~~~~-----~~~~--adi~v~ps~--- 275 (358)
T cd03812 209 FLIEIFAELLKKNPNAKLL-LVGDGELEEEIKKKVKELGLEDKV-IFLGV-RNDVPE-----LLQA--MDVFLFPSL--- 275 (358)
T ss_pred HHHHHHHHHHHhCCCeEEE-EEeCCchHHHHHHHHHhcCCCCcE-EEecc-cCCHHH-----HHHh--cCEEEeccc---
Confidence 344444444332 24544 55888865444 444556665433 23444 222222 2333 223333322
Q ss_pred cccccchHHHHHHHHhCCCEEEEeCCCCCc
Q 026370 194 EVAEPYIRRRAVRHLEKGRVVIFAAGTGNP 223 (239)
Q Consensus 194 ~i~e~y~~~ea~~~L~~G~IvVfagGtg~P 223 (239)
.|.+ -..+.+++..|..||....+|.+
T Consensus 276 --~E~~-~~~~lEAma~G~PvI~s~~~~~~ 302 (358)
T cd03812 276 --YEGL-PLVLIEAQASGLPCILSDTITKE 302 (358)
T ss_pred --ccCC-CHHHHHHHHhCCCEEEEcCCchh
Confidence 1223 24689999999888876444444
No 346
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=21.50 E-value=1.4e+02 Score=30.47 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=10.1
Q ss_pred ccEEEEEecccc
Q 026370 90 WQRVLLKVSGEA 101 (239)
Q Consensus 90 ~krIVIKLGGsa 101 (239)
|..++|..|...
T Consensus 279 ~DaVilAtGa~~ 290 (652)
T PRK12814 279 FDAVLLAVGAQK 290 (652)
T ss_pred cCEEEEEcCCCC
Confidence 889999998763
No 347
>PLN02546 glutathione reductase
Probab=21.41 E-value=1e+02 Score=31.07 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=40.8
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccc---hhHHHHH
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSS---ADYIGML 164 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~---aD~IGMl 164 (239)
.|+++||..|.....++-+ +++ .+. -++.+.++...+-+ ++|+|||.+.-.. ....++|.+-.. .|++.-.
T Consensus 216 ~~D~LVIATGs~p~~P~Ip-G~~--~v~-~~~~~l~~~~~~k~-V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~ 290 (558)
T PLN02546 216 TARNILIAVGGRPFIPDIP-GIE--HAI-DSDAALDLPSKPEK-IAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG 290 (558)
T ss_pred ECCEEEEeCCCCCCCCCCC-Chh--hcc-CHHHHHhccccCCe-EEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc
Confidence 4778888888876543211 121 111 12222232233334 5677999884442 111334432222 1222111
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 026370 165 ATVMNAIFLQATMESIGIP 183 (239)
Q Consensus 165 AT~LNAllL~~aL~~~gi~ 183 (239)
--...+..+...|++.|++
T Consensus 291 ~d~~~~~~l~~~L~~~GV~ 309 (558)
T PLN02546 291 FDEEVRDFVAEQMSLRGIE 309 (558)
T ss_pred cCHHHHHHHHHHHHHCCcE
Confidence 1122234456667777765
No 348
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=21.39 E-value=2.6e+02 Score=27.19 Aligned_cols=64 Identities=16% Similarity=0.327 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCceEEeccc---cCcccccchHHHHHHHHhCCCEEEEeCCCCCc----cccchHHHHHHhh
Q 026370 171 IFLQATMESIGIPTRVQTAFR---MSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNP----FFTTDTAAALRCA 236 (239)
Q Consensus 171 llL~~aL~~~gi~a~v~SAi~---i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~P----~fTTDt~AAlrA~ 236 (239)
+++++....+|+|+.+.-+-. .-+++|..+..-+.++|...++||- |.|.- -|..|.+.|+..+
T Consensus 161 ~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvY--GdG~~iRDWl~VeDh~~ai~~V 231 (340)
T COG1088 161 LLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVY--GDGLQIRDWLYVEDHCRAIDLV 231 (340)
T ss_pred HHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCcee--cCCcceeeeEEeHhHHHHHHHH
Confidence 466788889999977762211 1468888899999999999999998 66665 6788888887654
No 349
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.36 E-value=1.6e+02 Score=26.34 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCC
Q 026370 169 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGT 220 (239)
Q Consensus 169 NAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGt 220 (239)
+..-+...+++.|+...++..+.-.+....++++.+.+..+.-.+||.++|+
T Consensus 153 ~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGG 204 (258)
T PRK01033 153 DPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGG 204 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCC
Confidence 3445556677778888888877766666667778777777777788886554
No 350
>PRK10717 cysteine synthase A; Provisional
Probab=21.29 E-value=3.4e+02 Score=24.92 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=37.2
Q ss_pred EEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCc----eEEEEECCChhhhhh-hhhhhcCCCcc
Q 026370 92 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI----EVAIVVGGGNIFRGA-SAAGNSGLDRS 156 (239)
Q Consensus 92 rIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~----~I~IV~GGGniaRg~-~~Ar~~Gi~r~ 156 (239)
.|.+|+ |-+.+.+. + ..+.....|.+..++|. +.+|....||..+.. -+|+.+|++-.
T Consensus 29 ~i~~K~--E~~nptGS--~---K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~ 91 (330)
T PRK10717 29 EILGKA--EFLNPGGS--V---KDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTV 91 (330)
T ss_pred eEEEEe--eccCCCCC--c---hHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEE
Confidence 688887 44444322 3 44555555666666665 557888999998886 55567887543
No 351
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=21.24 E-value=1.7e+02 Score=23.72 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCcc
Q 026370 117 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS 156 (239)
Q Consensus 117 ~iA~~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~ 156 (239)
.+.+.|+.+.++|++++||.+|-..+-..- .+.+|++..
T Consensus 84 g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~-l~~~g~~~~ 122 (201)
T TIGR01491 84 YAEELVRWLKEKGLKTAIVSGGIMCLAKKV-AEKLNPDYV 122 (201)
T ss_pred cHHHHHHHHHHCCCEEEEEeCCcHHHHHHH-HHHhCCCeE
Confidence 345567777778999999998854433332 244666543
No 352
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=21.11 E-value=98 Score=26.66 Aligned_cols=25 Identities=24% Similarity=0.439 Sum_probs=13.6
Q ss_pred HHHHHHHhCCceEEEEECCChhhhh
Q 026370 120 REVASVTRLGIEVAIVVGGGNIFRG 144 (239)
Q Consensus 120 ~~I~~l~~~G~~I~IV~GGGniaRg 144 (239)
+.++++.+.|++=+.|.|||.++..
T Consensus 131 ~~l~~L~~~g~~~vlveGG~~l~~~ 155 (217)
T PRK05625 131 DLLEDLYERGIKRLMVEGGGTLIWS 155 (217)
T ss_pred HHHHHHHHCCCCEEEEecCHHHHHH
Confidence 3444444455555666676666443
No 353
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=20.92 E-value=1.9e+02 Score=28.39 Aligned_cols=57 Identities=19% Similarity=0.366 Sum_probs=35.1
Q ss_pred cccEEEEEeccccccCCCC---------------C-CCC-HHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh
Q 026370 89 KWQRVLLKVSGEALAGDHT---------------Q-NID-PKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA 145 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~---------------~-gid-~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~ 145 (239)
+++||+|--||-.+.+.+- + |+. ..++..+-+.++=..++++++++-||||+...+.
T Consensus 28 ~~~kVLi~YGGGSIKrnGvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGGGSViD~t 101 (384)
T COG1979 28 KDAKVLIVYGGGSIKKNGVYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVIDGT 101 (384)
T ss_pred ccCeEEEEecCccccccchHHHHHHHhcCceEEEecCCCCCchHHHHHHHHHHHHHcCceEEEEecCcchhhhH
Confidence 3678888877765554320 0 111 1123333344444446789999999999999995
No 354
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=20.86 E-value=2.8e+02 Score=26.22 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCCceEEeccccCcccccc-hHHHHHHHH--hCCCEEEEeCCCCCc--cccchHHHHH
Q 026370 168 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPY-IRRRAVRHL--EKGRVVIFAAGTGNP--FFTTDTAAAL 233 (239)
Q Consensus 168 LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y-~~~ea~~~L--~~G~IvVfagGtg~P--~fTTDt~AAl 233 (239)
-|+.+|...|++.|+...-+ .-++++. ..+++.+.+ +...++|..||+|-= .+|-++++.+
T Consensus 175 sn~~~L~~~L~~~G~~v~~~-----~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~~D~tpeAl~~l 240 (312)
T PRK03604 175 RSGKLIVEGLEEAGFEVSHY-----TIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGPRDVTPEALAPL 240 (312)
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCCCccHHHHHHHh
Confidence 68889999999988764332 2234444 223333333 345888887776643 6666666554
No 355
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.75 E-value=2.2e+02 Score=24.40 Aligned_cols=33 Identities=30% Similarity=0.553 Sum_probs=20.3
Q ss_pred cEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q 026370 91 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 135 (239)
Q Consensus 91 krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV 135 (239)
|||+|-++|+.=. ....+.+++|.+.|++|-+|
T Consensus 1 k~I~lgvtGs~~a------------~~~~~ll~~L~~~g~~V~vi 33 (177)
T TIGR02113 1 KKILLAVTGSIAA------------YKAADLTSQLTKLGYDVTVL 33 (177)
T ss_pred CEEEEEEcCHHHH------------HHHHHHHHHHHHCCCEEEEE
Confidence 5899999998422 22335555555667776433
No 356
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.72 E-value=2.6e+02 Score=21.56 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCceEEEEECCChhhh
Q 026370 116 MAIAREVASVTRLGIEVAIVVGGGNIFR 143 (239)
Q Consensus 116 ~~iA~~I~~l~~~G~~I~IV~GGGniaR 143 (239)
+++.+.++.+.+.|.+++.+++.+.+..
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~~l~~ 84 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGGKLLE 84 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence 3444445555567899998888886543
No 357
>COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C [General function prediction only]
Probab=20.71 E-value=4.5e+02 Score=24.85 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHh----CCceEEEE
Q 026370 111 DPKITMAIAREVASVTR----LGIEVAIV 135 (239)
Q Consensus 111 d~~~l~~iA~~I~~l~~----~G~~I~IV 135 (239)
|.+.+++.|+++..-.. .|.+|+||
T Consensus 50 dld~vk~~A~ellG~i~~aPlaGtEIAvV 78 (310)
T COG4052 50 DLDIVKEKAGELLGKIIEAPLAGTEIAVV 78 (310)
T ss_pred HHHHHHHHHHHhhhhheecccCCceEEEe
Confidence 47889999988875432 68899988
No 358
>PLN02921 naphthoate synthase
Probab=20.71 E-value=2e+02 Score=27.09 Aligned_cols=58 Identities=12% Similarity=0.301 Sum_probs=38.5
Q ss_pred ccEEEEEe--ccccc----cC-CCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEECCC--hhhhhhhh
Q 026370 90 WQRVLLKV--SGEAL----AG-DHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGG--NIFRGASA 147 (239)
Q Consensus 90 ~krIVIKL--GGsaL----~~-d~~~gid~~~l~~iA~~I~~l~~-~G~~I~IV~GGG--niaRg~~~ 147 (239)
|+-|.+.. .|.+. .. ++...++.+.++++.+.+.++.+ ...+++|+.|.| .|--|.++
T Consensus 64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl 131 (327)
T PLN02921 64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQ 131 (327)
T ss_pred CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcCh
Confidence 55666665 24332 22 22234899999999999998763 557899999977 35455554
No 359
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=20.69 E-value=1.5e+02 Score=28.71 Aligned_cols=92 Identities=24% Similarity=0.296 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEECCChhhhhh-hhhhhcCCCccchhHHHHHHH-------HHHHHHHHHHHHhcCCC
Q 026370 112 PKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLAT-------VMNAIFLQATMESIGIP 183 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg~-~~Ar~~Gi~r~~aD~IGMlAT-------~LNAllL~~aL~~~gi~ 183 (239)
.+..+.+++.++ +. -++||-| .|||. ..|.+.-++.. .--++++++ +.|..+.+...+. |
T Consensus 127 ~~~~~~~a~~L~---~~--g~~IvSG---lA~GID~~AH~aaL~~~-G~TiaVl~~Gld~iYP~~n~~l~~~i~~~-g-- 194 (350)
T COG0758 127 LDYTRDLAEYLA---QN--GITIVSG---LARGIDTEAHKAALNAG-GKTIAVLATGLDKIYPRENIKLAEKIAEN-G-- 194 (350)
T ss_pred HHHHHHHHHHHH---hC--CeEEEec---CcceecHHHHHHHHHcC-CcEEEEEcCCCCccCChhhHHHHHHHHhc-C--
Confidence 344445554443 33 4788888 45565 22222112221 223445555 7888888887766 3
Q ss_pred ceEEeccccCcccccc---hHHHHHHHHhCCCEEEE
Q 026370 184 TRVQTAFRMSEVAEPY---IRRRAVRHLEKGRVVIF 216 (239)
Q Consensus 184 a~v~SAi~i~~i~e~y---~~~ea~~~L~~G~IvVf 216 (239)
-++|-++.+.-+..+ .+.+++-.|.+|-+||=
T Consensus 195 -~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvE 229 (350)
T COG0758 195 -LLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVE 229 (350)
T ss_pred -eEEeecCCCCCcccccchHHHHHHHHhcCceEEEe
Confidence 344544443322222 57788888998877774
No 360
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.61 E-value=1.3e+02 Score=25.90 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhCCc--eEEEEECCChhhhhhhhhhhcCCCccchh
Q 026370 112 PKITMAIAREVASVTRLGI--EVAIVVGGGNIFRGASAAGNSGLDRSSAD 159 (239)
Q Consensus 112 ~~~l~~iA~~I~~l~~~G~--~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD 159 (239)
.+.++++.+.|++. +. ++-|++||.-+-. +.++++|.|-...|
T Consensus 147 ~~~~~~~i~~lr~~---~~~~~~~i~vGG~~~~~--~~~~~~GaD~~~~d 191 (201)
T cd02070 147 MGGMKEVIEALKEA---GLRDKVKVMVGGAPVNQ--EFADEIGADGYAED 191 (201)
T ss_pred HHHHHHHHHHHHHC---CCCcCCeEEEECCcCCH--HHHHHcCCcEEECC
Confidence 45667777777653 44 6778888875532 45677888877665
No 361
>PLN02165 adenylate isopentenyltransferase
Probab=20.46 E-value=73 Score=30.54 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHhCCCEEEEeCCCC
Q 026370 204 AVRHLEKGRVVIFAAGTG 221 (239)
Q Consensus 204 a~~~L~~G~IvVfagGtg 221 (239)
+.+..+.|++||++||||
T Consensus 126 I~~i~~~~~~PI~vGGTg 143 (334)
T PLN02165 126 ISEITSRQKLPIVAGGSN 143 (334)
T ss_pred HHHHHHCCCcEEEECChH
Confidence 446677999999999998
No 362
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=20.46 E-value=75 Score=30.16 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=26.9
Q ss_pred cccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEECCChhhhh
Q 026370 89 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG 144 (239)
Q Consensus 89 ~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV~GGGniaRg 144 (239)
.|+++||.-|.....++. .+++.+.+.. ++.+.++...+.+ ++|+|||.+.-.
T Consensus 137 ~~d~lviATGs~p~~p~~-~~~~~~~v~~-~~~~~~~~~~~~~-v~IiGgG~~g~E 189 (461)
T PRK05249 137 TADKIVIATGSRPYRPPD-VDFDHPRIYD-SDSILSLDHLPRS-LIIYGAGVIGCE 189 (461)
T ss_pred EcCEEEEcCCCCCCCCCC-CCCCCCeEEc-HHHhhchhhcCCe-EEEECCCHHHHH
Confidence 588999999987654321 1121111111 1222222233445 457799998433
No 363
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.44 E-value=1.1e+02 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=19.7
Q ss_pred HHHHHhCCceEEEEECC---ChhhhhhhhhhhcC
Q 026370 122 VASVTRLGIEVAIVVGG---GNIFRGASAAGNSG 152 (239)
Q Consensus 122 I~~l~~~G~~I~IV~GG---GniaRg~~~Ar~~G 152 (239)
+++|.++ ..+.||+|| .|.-|=++.|++.|
T Consensus 203 ~~~La~~-vD~miVVGg~~SsNT~rL~eia~~~~ 235 (281)
T PRK12360 203 AKELSKE-VDVMIVIGGKHSSNTQKLVKICEKNC 235 (281)
T ss_pred HHHHHHh-CCEEEEecCCCCccHHHHHHHHHHHC
Confidence 3444433 679999999 67766666665544
No 364
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=20.41 E-value=2.8e+02 Score=29.07 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=36.3
Q ss_pred CcccEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q 026370 88 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 135 (239)
Q Consensus 88 ~~~krIVIKLGGsaL~~d~~~gid~~~l~~iA~~I~~l~~~G~~I~IV 135 (239)
++-|||+|.+==++-.++++.-.|..+++.....|+.++++|.+++|+
T Consensus 11 ~~gK~VlvRvD~NvP~~~~g~i~dd~RI~~~lpTI~~l~~~gakvvl~ 58 (645)
T PRK13962 11 VKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAKVILV 58 (645)
T ss_pred cCCCEEEEEecCCCCcCCCCcCCCcHhHHHHHHHHHHHHhCCCeEEEE
Confidence 457899988766654432223367889999999999999999998765
No 365
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=20.22 E-value=1.7e+02 Score=23.90 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=35.0
Q ss_pred HHHHHHhCCceEEEEECCChhhhhhhhhhhcCCCccchhHHHHHHHHHHHHHHHHHHHhcCCC
Q 026370 121 EVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIP 183 (239)
Q Consensus 121 ~I~~l~~~G~~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD~IGMlAT~LNAllL~~aL~~~gi~ 183 (239)
.|++|.++|++++|+.|+....-. ...+.+|++...... .-....+..+++.++++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~-~~l~~~gi~~~~~~~------~~k~~~~~~~~~~~~~~ 91 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVE-DRCKTLGITHLYQGQ------SNKLIAFSDILEKLALA 91 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHH-HHHHHcCCCEEEecc------cchHHHHHHHHHHcCCC
Confidence 677887889999999998654332 334567887544221 12344556666666654
No 366
>PRK08788 enoyl-CoA hydratase; Validated
Probab=20.17 E-value=2.2e+02 Score=26.25 Aligned_cols=39 Identities=10% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHHh------CCceEEEEECC-Chhh-hhhhh
Q 026370 109 NIDPKITMAIAREVASVTR------LGIEVAIVVGG-GNIF-RGASA 147 (239)
Q Consensus 109 gid~~~l~~iA~~I~~l~~------~G~~I~IV~GG-Gnia-Rg~~~ 147 (239)
.++.+.+.++.+.+.++.+ ...+++|+.|+ |..| -|.++
T Consensus 39 al~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl 85 (287)
T PRK08788 39 CFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDL 85 (287)
T ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCH
Confidence 4899999999999998864 45788999997 6544 45544
No 367
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=20.16 E-value=1.9e+02 Score=24.99 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCceEEeccccCcccccchHHHHHHHHhCCCEEEEeCCCCC
Q 026370 170 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGN 222 (239)
Q Consensus 170 AllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ea~~~L~~G~IvVfagGtg~ 222 (239)
..-+...+++.|+...+++.+.-..-.+.++++.+.+..+.-.+||+++|+-.
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~ 207 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAG 207 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCC
Confidence 34555666777888777776655444455667777777766678888766653
No 368
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=20.16 E-value=6.4e+02 Score=22.63 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=51.9
Q ss_pred HhCCc-eEEEEECCChhhhhhhhhhhcCCCccchh--HHHHHHHHHHHHHHHHHHHhcCCCceEEeccccCcccccchHH
Q 026370 126 TRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSSAD--YIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR 202 (239)
Q Consensus 126 ~~~G~-~I~IV~GGGniaRg~~~Ar~~Gi~r~~aD--~IGMlAT~LNAllL~~aL~~~gi~a~v~SAi~i~~i~e~y~~~ 202 (239)
.+.+. ++++|.|..-.++........+..-...| .-||.++..+++-- +...+ +..++..-.++.+. +.+.+
T Consensus 42 ~~a~~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~Gls~Sl~ag~~a---~~~~~-~~v~~~lgDmP~V~-~~t~~ 116 (199)
T COG2068 42 LSAGLDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQGLSTSLKAGLRA---ADAEG-DGVVLMLGDMPQVT-PATVR 116 (199)
T ss_pred HhcCCCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhhHhHHHHHHHHh---cccCC-CeEEEEeCCCCCCC-HHHHH
Confidence 33455 66666666522222222222333333344 78999998877632 22222 34444333344443 33455
Q ss_pred HHHHHHhCCC---EEEEeCCCCCc-cccchHHHHH
Q 026370 203 RAVRHLEKGR---VVIFAAGTGNP-FFTTDTAAAL 233 (239)
Q Consensus 203 ea~~~L~~G~---IvVfagGtg~P-~fTTDt~AAl 233 (239)
++...+.... ++...|.-|+| +|.-|....+
T Consensus 117 rl~~~~~~~~~~v~p~~~g~rG~Pv~~~~~~~~~l 151 (199)
T COG2068 117 RLIAAFRARGAAVRPVYGGARGHPVLLSKDLFPAL 151 (199)
T ss_pred HHHHhccccCceeeeeccCCcCCceeechhHHHHH
Confidence 5666555542 23333888999 6666654443
No 369
>KOG1780 consensus Small Nuclear ribonucleoprotein G [RNA processing and modification]
Probab=20.11 E-value=61 Score=25.06 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=9.8
Q ss_pred ccEEEEEecccc
Q 026370 90 WQRVLLKVSGEA 101 (239)
Q Consensus 90 ~krIVIKLGGsa 101 (239)
.|+++|||+|+-
T Consensus 14 dKki~lklnG~r 25 (77)
T KOG1780|consen 14 DKKIVLKLNGGR 25 (77)
T ss_pred hheEEEEeCCCc
Confidence 578999998874
No 370
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.04 E-value=3.4e+02 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEECCCh
Q 026370 110 IDPKITMAIAREVASVTRLGIEVAIVVGGGN 140 (239)
Q Consensus 110 id~~~l~~iA~~I~~l~~~G~~I~IV~GGGn 140 (239)
+|.+.++++++.|++- .+ +.+.|-|.
T Consensus 18 l~~~~l~~~~~~i~~a----~~-I~i~G~G~ 43 (179)
T cd05005 18 IDEEELDKLISAILNA----KR-IFVYGAGR 43 (179)
T ss_pred cCHHHHHHHHHHHHhC----Ce-EEEEecCh
Confidence 6788899998888652 24 55556553
Done!