Query 026372
Match_columns 239
No_of_seqs 123 out of 923
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0819 TenA Putative transcri 100.0 1.8E-56 3.9E-61 374.6 25.0 212 12-238 1-217 (218)
2 PRK14713 multifunctional hydro 100.0 2.3E-50 4.9E-55 380.0 26.2 211 11-239 317-529 (530)
3 PF03070 TENA_THI-4: TENA/THI- 100.0 1.7E-49 3.6E-54 332.4 18.2 204 19-237 1-209 (210)
4 PRK09517 multifunctional thiam 100.0 1.2E-48 2.6E-53 380.9 26.2 216 4-238 536-752 (755)
5 PTZ00347 phosphomethylpyrimidi 100.0 1.1E-46 2.4E-51 353.4 24.5 208 9-238 8-219 (504)
6 KOG2598 Phosphomethylpyrimidin 100.0 6.1E-30 1.3E-34 227.3 18.2 207 12-237 309-521 (523)
7 COG5424 Pyrroloquinoline quino 99.3 2E-10 4.3E-15 96.1 18.5 208 10-237 7-227 (242)
8 PRK05157 pyrroloquinoline quin 99.2 6.5E-09 1.4E-13 88.7 19.0 197 10-237 10-229 (246)
9 TIGR02111 PQQ_syn_pqqC coenzym 99.0 5.8E-08 1.3E-12 82.3 18.3 192 14-236 6-221 (239)
10 cd00232 HemeO Heme oxygenase c 97.5 0.02 4.2E-07 47.5 17.9 168 13-196 1-174 (203)
11 CHL00168 pbsA heme oxygenase; 97.3 0.03 6.5E-07 48.0 17.1 109 13-132 4-113 (238)
12 PF01126 Heme_oxygenase: Heme 96.2 0.13 2.9E-06 42.5 12.3 126 12-151 1-128 (205)
13 PF12981 DUF3865: Domain of Un 96.0 0.16 3.5E-06 42.5 11.6 187 28-234 20-225 (231)
14 COG5398 Heme oxygenase [Inorga 95.9 0.12 2.6E-06 43.2 10.2 108 14-133 3-112 (238)
15 PF14518 Haem_oxygenas_2: Iron 89.7 1 2.2E-05 33.1 5.5 61 96-156 17-81 (106)
16 PF11251 DUF3050: Protein of u 35.1 2.9E+02 0.0063 23.6 11.8 102 116-234 120-231 (232)
17 PF02609 Exonuc_VII_S: Exonucl 33.4 1.3E+02 0.0028 19.1 5.3 35 182-227 1-35 (53)
18 PF01320 Colicin_Pyocin: Colic 28.5 88 0.0019 22.4 3.4 40 174-227 7-46 (85)
19 COG1722 XseB Exonuclease VII s 25.0 2.5E+02 0.0054 19.8 5.2 36 181-227 11-46 (81)
20 PRK14067 exodeoxyribonuclease 24.9 2.2E+02 0.0048 20.0 4.9 37 180-227 7-43 (80)
21 PF15565 Imm16: Immunity prote 24.5 1.3E+02 0.0028 22.4 3.8 38 185-231 14-51 (106)
22 PF05974 DUF892: Domain of unk 22.1 4E+02 0.0086 21.0 9.4 76 47-129 5-81 (159)
23 PRK14068 exodeoxyribonuclease 22.1 2.8E+02 0.0061 19.3 5.1 37 180-227 6-42 (76)
24 PRK00977 exodeoxyribonuclease 22.0 2.8E+02 0.0061 19.4 5.0 37 180-227 10-46 (80)
25 PRK14064 exodeoxyribonuclease 21.9 2.7E+02 0.0059 19.3 4.8 37 180-227 6-42 (75)
No 1
>COG0819 TenA Putative transcription activator [Transcription]
Probab=100.00 E-value=1.8e-56 Score=374.60 Aligned_cols=212 Identities=21% Similarity=0.309 Sum_probs=197.0
Q ss_pred CchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH
Q 026372 12 GGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM 91 (239)
Q Consensus 12 ~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~ 91 (239)
|.|++.|++.++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++|+++ .+.+..+...+
T Consensus 1 ~~f~~~L~~~~~~~W~~~~~H~FV~~L~~GtL~~~~F~~YL~QDy~YL~~~~ra~~~~~~ka~~-----~~~~~~~~~~~ 75 (218)
T COG0819 1 MMFSEELIRAAQPIWQKYIEHPFVQELADGTLPREKFQFYLVQDYLYLVNFARALALLASKAPD-----LELMEELAKII 75 (218)
T ss_pred CchHHHHHHHhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999 78888888888
Q ss_pred hh-HHHHHHHHHHHHHHcCCCC---CCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-CC
Q 026372 92 AG-LHDEIAWFKKEASKWGVEL---SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NT 166 (239)
Q Consensus 92 ~~-i~~E~~~h~~~~~~~gi~~---~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-~~ 166 (239)
+. ++.|+.+|+++++++||+. .+.+++|+|.+||+||++++ ..+++.++++|+.||+|+|.+||+++..... +.
T Consensus 76 ~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ym~~~~-~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~ 154 (218)
T COG0819 76 QFLVEGEMELHERLAEELGISLDELLKTEPSPANKAYTRYLLDTA-YSGSFAELLAALLPCLWGYAEIGKRLKAKPRASP 154 (218)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 65 5679999999999999997 35889999999999999995 7778999999999999999999999866432 23
Q ss_pred CchHHHHhcccCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhhcC
Q 026372 167 PPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238 (239)
Q Consensus 167 ~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~Fwd~a~~~ 238 (239)
.++|++||++|+|++|.+.|++++++||+++...++ +++++|.+||++++++|..||||||+.
T Consensus 155 ~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~---------~~~~~l~~iF~~ss~~E~~Fwd~a~~~ 217 (218)
T COG0819 155 NPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSE---------EELEKLKQIFLTASRFELAFWDMAYRL 217 (218)
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999999999998888 899999999999999999999999975
No 2
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=2.3e-50 Score=380.05 Aligned_cols=211 Identities=18% Similarity=0.197 Sum_probs=194.5
Q ss_pred CCchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHH
Q 026372 11 KGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGG 90 (239)
Q Consensus 11 ~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~ 90 (239)
..+|+++|++.++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++|+++ .+++..++..
T Consensus 317 ~~~fs~~L~~~~~~~w~~~~~HpFv~~L~~GtL~~~~F~~Yl~QD~~yL~~~~r~~a~~~aka~~-----~e~~~~~~~~ 391 (530)
T PRK14713 317 AGPFTAALWQASGPIREAIEDLPFVRALADGTLPEEAFEFYLAQDALYLNGYSRALARLAALAPD-----PAEQVFWAQS 391 (530)
T ss_pred CccHHHHHHHhhHHHHHHHHcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999 7888888888
Q ss_pred Hhh-HHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCC-CCCCCc
Q 026372 91 MAG-LHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEP-DTNTPP 168 (239)
Q Consensus 91 ~~~-i~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~-~~~~~~ 168 (239)
+.. +..|+++|+++++++|++ ++++|+|++|++||++++ .++++.++++|++||+|+|.+||+++... ..++++
T Consensus 392 ~~~~~~~E~~~h~~~~~~~~~~---~~~~p~~~aY~~~l~~~a-~~~~~~~~l~AllPC~~~Y~~ig~~l~~~~~~~~~~ 467 (530)
T PRK14713 392 AQACLEVESELHRSWLGDRDAD---TAPSPVTLAYTDFLLARA-AGGSYAVGAAAVLPCFWLYAEVGAELHARAGNPDDH 467 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc---CCCChHHHHHHHHHHHHH-hcCCHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCC
Confidence 754 679999999999999973 688999999999999995 67799999999999999999999987542 122346
Q ss_pred hHHHHhcccCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhhcCC
Q 026372 169 ELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA 239 (239)
Q Consensus 169 ~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~Fwd~a~~~~ 239 (239)
+|++||++|++++|.+.|+++++++|+++..+++ +++++|+++|+++|+||++||||||+++
T Consensus 468 ~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~---------~~~~~~~~~F~~a~~~E~~Fwd~A~~~~ 529 (530)
T PRK14713 468 PYAEWLQTYADPEFAAATRRAIAFVDRAFRAASP---------AERAAMARAFLTACRYELEFFDQARRRA 529 (530)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999999999999999999999998988 8999999999999999999999999874
No 3
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=100.00 E-value=1.7e-49 Score=332.42 Aligned_cols=204 Identities=23% Similarity=0.349 Sum_probs=185.0
Q ss_pred HHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH-hhHHHH
Q 026372 19 LRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM-AGLHDE 97 (239)
Q Consensus 19 ~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~-~~i~~E 97 (239)
++++.|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++.+++|+++ .+.+..++..+ ..+.+|
T Consensus 1 ~~~~~~~w~~~~~HPFv~~l~~GtL~~~~f~~Yl~QD~~yl~~~~r~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~e 75 (210)
T PF03070_consen 1 HQKAEPIWEAILNHPFVQELADGTLPKEAFRYYLIQDYHYLKHFARALALLASKAPD-----PEEQRELLSRLIQEIEEE 75 (210)
T ss_dssp SHHTHHHHHHHHTSHHHHHHHTTESEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----HHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHCCHHHHHHhCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999 67675666665 567899
Q ss_pred HHHHHHHHHHcCCCCC---CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCchHHHH
Q 026372 98 IAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEV 173 (239)
Q Consensus 98 ~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-~~~~~y~~W 173 (239)
+++|+++++.+||+.+ +++++|+|++|++||++++ ..++++++++|++||+|+|.+||+++..... +.+++|.+|
T Consensus 76 ~~~~~~~~~~~gi~~~~~~~~~~~p~~~~y~~~l~~~a-~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~~~~~~~y~~w 154 (210)
T PF03070_consen 76 LELHEDFAEELGISREDLENIEPSPATRAYTDFLLSLA-QTGSLAEGLAALLPCEWIYAEIGKRLAEKLRAPEDNPYQEW 154 (210)
T ss_dssp HHHHHHHHHHTTSHHHHHHHSTC-HHHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSSHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHhhhhhhHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHH
Confidence 9999999999999985 4889999999999999995 6778999999999999999999988764322 456789999
Q ss_pred hcccCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhhc
Q 026372 174 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237 (239)
Q Consensus 174 i~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~Fwd~a~~ 237 (239)
|+.|++++|...|+++.+++|+++...++ +++++++++|+++|++|++|||+||+
T Consensus 155 i~~y~~~~f~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~f~~~~~~E~~Fwd~a~~ 209 (210)
T PF03070_consen 155 IDMYASEEFEAFVEWLEELLDELAAEASD---------EERERLEEIFRRSCELEYDFWDAAYN 209 (210)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHTHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988777 78999999999999999999999985
No 4
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.2e-48 Score=380.86 Aligned_cols=216 Identities=17% Similarity=0.153 Sum_probs=197.3
Q ss_pred ccccccCCCchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhH
Q 026372 4 KAKEDAGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGD 83 (239)
Q Consensus 4 ~~~~~~~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~ 83 (239)
-|-..+..-+|+++||+.+.|+|+++++||||++|++||||.++|++||+|||+||.+|+|+++++++|+++ .+.
T Consensus 536 ~~~~~~~~~~f~~~L~~~~~~~w~~~~~HPFv~~L~~GtL~~e~F~~YL~QD~~YL~~yar~~a~~~aka~~-----~~~ 610 (755)
T PRK09517 536 PAPRIEPAGPFTRALWEASGDIIAEINDSDFIRMLGDGTLRRPEFDFYIDQDAQYLRQYSRALARLSSIAPD-----SHA 610 (755)
T ss_pred cccccCCCCChHHHHHHHhHHHHHHHhcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHH
Confidence 344556667899999999999999999999999999999999999999999999999999999999999999 788
Q ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCC
Q 026372 84 TEVILGGMA-GLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEP 162 (239)
Q Consensus 84 ~~~l~~~~~-~i~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~ 162 (239)
+..+...+. .+..|+.+|+.+++.+|++ .+++|+|.+|++||++++ ..++++++++|++||+|+|.+||+++...
T Consensus 611 ~~~~~~~~~~~~~~E~~~h~~~~~~~~~~---~~~~p~~~aYt~~l~~~a-~~g~~~~~laAllPC~w~Y~~ig~~l~~~ 686 (755)
T PRK09517 611 QVEWAQSAAECIVVEAELHRSYLSGKEAP---SAPSPVTMAYTDFLIART-YTEDYVVGVAAVLPCYWLYAEIGLMLAEQ 686 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcC---CCCChHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888875 4689999999999999963 678999999999999995 67799999999999999999999998653
Q ss_pred CCCCCchHHHHhcccCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhhcC
Q 026372 163 DTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238 (239)
Q Consensus 163 ~~~~~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~Fwd~a~~~ 238 (239)
.. .+++|++||++|++++|.+.|+++++++|+++..+++ +++++|+++|+++|+||++||||||+.
T Consensus 687 ~~-~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~---------~~~~~l~~~F~~a~~lE~~Fwd~A~~~ 752 (755)
T PRK09517 687 NH-DEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGP---------EQRVDAARAFLSASVHEREFFDQATRH 752 (755)
T ss_pred cC-CCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2457999999999999999999999999999998988 899999999999999999999999974
No 5
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.1e-46 Score=353.41 Aligned_cols=208 Identities=13% Similarity=0.221 Sum_probs=184.2
Q ss_pred cCCCchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHH
Q 026372 9 AGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVIL 88 (239)
Q Consensus 9 ~~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~ 88 (239)
+...+|+++||+.++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++|+++ .+++..++
T Consensus 8 ~~~~~fs~~L~~~~~~~~~~~~~HpFv~~l~~GtL~~~~F~~Yl~QD~~Yl~~~~r~~a~~~~ka~~-----~~~~~~~~ 82 (504)
T PTZ00347 8 PVFGGLSEALWKENQDLAMMSLHLPFVQGLGDGTLDQNAFRTYIAQDTLYLNGYIRILSYCITKSDV-----TATGGGLL 82 (504)
T ss_pred CCCCCHHHHHHHhHHHHHHHHhCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHH
Confidence 4457899999999999999999999999999999999999999999999999999999999999999 78888888
Q ss_pred HHHhh-HHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHHHhhccCCC-C
Q 026372 89 GGMAG-LHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDY--TVAITVFWAIEAVYQESFAHCLEPD-T 164 (239)
Q Consensus 89 ~~~~~-i~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~~~a~~~~~~--~~~l~a~~~c~~~Y~~i~~~~~~~~-~ 164 (239)
..+.. +..|..+|++++.. .+..+++|+|++||+||++++ ..+++ +++++|++||+|+|.+||+++.... .
T Consensus 83 ~~~~~~~~~e~~~h~~~~~~----~~~~~~~p~~~aY~~~l~~~a-~~g~~~~~~~l~Al~pC~~~Y~~ig~~l~~~~~~ 157 (504)
T PTZ00347 83 ELLKGVLEELKNCHHHYIDN----PDAAGPEAACRKYVDFLLASG-NADTLGPSVVIAAVIPCARLYAWVGQELTNEVEL 157 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hhccCCCHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 88754 56778899998642 235678999999999999995 66777 8999999999999999999875422 1
Q ss_pred CCCchHHHHhcccCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhhcC
Q 026372 165 NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238 (239)
Q Consensus 165 ~~~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~Fwd~a~~~ 238 (239)
+.+++|++||++|++++|.+.|.++++++|+++. + +++++++++|+++|++|++||||||++
T Consensus 158 ~~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~---~---------~~~~~~~~~F~~~~~~E~~Fw~~Ay~~ 219 (504)
T PTZ00347 158 TESHPFRRWLLSYSDEPINTSVEQLESLLDKYIR---P---------GEFSEVAQAYRRAMELEYDFFDSFGYC 219 (504)
T ss_pred CCCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---h---------hhHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 2346899999999999999999999999999964 2 567889999999999999999999974
No 6
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.97 E-value=6.1e-30 Score=227.29 Aligned_cols=207 Identities=16% Similarity=0.238 Sum_probs=181.1
Q ss_pred CchHHHHHH--HcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHH
Q 026372 12 GGVIDTWLR--KHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILG 89 (239)
Q Consensus 12 ~~~~~~L~~--~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~ 89 (239)
..|+..|+. +..|.|.+++||+|+.++++|||+...|..||.|||+||.+|+|+++..+.|.++ .+++..-+.
T Consensus 309 g~f~~yl~~hpkv~p~W~s~inh~fv~~~~~Gtl~~~~fq~~l~qdy~ylIn~ara~~v~g~ks~~-----i~~ie~~~~ 383 (523)
T KOG2598|consen 309 GSFFNYLINHPKVKPKWDSYINHEFVKQLADGTLERKKFQDYLEQDYLYLINYARAHGVAGSKSPT-----IEDIEKEAV 383 (523)
T ss_pred HHHHHHHhhCcccChhHHHHhhHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc-----HHHHHHHhH
Confidence 457777765 5559999999999999999999999999999999999999999999999999999 677766666
Q ss_pred HHhhHHHHHHHHHHHHHHcCCCCC---CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-C
Q 026372 90 GMAGLHDEIAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-N 165 (239)
Q Consensus 90 ~~~~i~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-~ 165 (239)
.++.+.+|+..|.++++.+|++.. +-+++|++++|.+|+.+++ ..++|.+...|+.| |..+...+...-. +
T Consensus 384 iv~~v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Aysry~~d~~-~~g~~~~l~~a~~p----y~~~l~~lk~~~~as 458 (523)
T KOG2598|consen 384 IVQHVREELVQHVRLREEYGVSDPDYLSCKKGPALRAYSRYINDTG-RRGNWQELVIALNP----YVFALDKLKDEITAS 458 (523)
T ss_pred HHHHHHhhccchHHHHHHhCCCchhhhhcCccHHHHHHHHHhhhhh-cccChhhhhhhhch----hhHHHHHHHhhcccC
Confidence 667788999999999999999973 2344899999999999995 78899999999999 6666655544221 2
Q ss_pred CCchHHHHhcccCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhhc
Q 026372 166 TPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237 (239)
Q Consensus 166 ~~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~Fwd~a~~ 237 (239)
..++|.+|+++|.+.++.++++...+.++...+..++ ++++.+..||.++|.+|..||+.++.
T Consensus 459 ~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~p---------e~~~~l~~i~~~~~~~Et~fw~t~~~ 521 (523)
T KOG2598|consen 459 EGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSP---------EKLQTLVTIFARVTEFETLFWTTALE 521 (523)
T ss_pred CCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3358999999999999999999999999999999999 99999999999999999999999874
No 7
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=99.34 E-value=2e-10 Score=96.11 Aligned_cols=208 Identities=12% Similarity=0.142 Sum_probs=152.0
Q ss_pred CCCchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHH
Q 026372 10 GKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILG 89 (239)
Q Consensus 10 ~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~ 89 (239)
+.++|..+|...++..-. ..|||.+.+.+|.|+++.++-|++.-|+|+.+|.+.++..++|+++ .+..+..++
T Consensus 7 ~~~~~~~~l~~i~~~~~~--~~HpF~~~m~~g~lt~~ql~~yvi~~~~~~k~~p~~lSail~rcdd-----~~~r~~~le 79 (242)
T COG5424 7 DRLSFWARLRFIGQFYYD--LPHPFYVAMQEGELTKEQLQGYVINRYYYQKNFPLYLSAILARCDD-----DDVRREWLE 79 (242)
T ss_pred hhHHHHHHHHHHHHHhcc--CCCHHHHHHHccCCCHHHHHHHHHhhhHHHHhhhHHHHHHHhcCCc-----HhHHHHHHH
Confidence 445677777766665332 7899999999999999999999999999999999999999999999 566666666
Q ss_pred HHh----hHH--HHHHHHHHHHHHcCCCCC---CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhcc
Q 026372 90 GMA----GLH--DEIAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCL 160 (239)
Q Consensus 90 ~~~----~i~--~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~ 160 (239)
.+. ... +.+++..++.+.+|++.+ +..|.|.++.=+..-...+ ...+++++++++...|..--.|...-.
T Consensus 80 ni~de~~g~~e~~hidlwlr~aeAlGvs~eei~s~eplp~~~~av~~~~~~a-~~~s~~~~~aslyt~El~apri~~~ki 158 (242)
T COG5424 80 NIMDEDNGYNEPNHIDLWLRLAEALGVSREEILSHEPLPSTRFAVDTWVRFA-TEKSWLEGAASLYTYELVAPRISVEKI 158 (242)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHcCCCHHHHhhcCCCHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHhhccHHHHHHc
Confidence 552 223 678999999999999984 4669999999999999985 778999999999987766544443211
Q ss_pred CCC---CCCCc-hHHHHhcccCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhh
Q 026372 161 EPD---TNTPP-ELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR 236 (239)
Q Consensus 161 ~~~---~~~~~-~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~Fwd~a~ 236 (239)
... ++... .=..|+..+.--+ ...+....+++.+++.. . +..+++.++-.+++..=+.|.|...
T Consensus 159 ~gl~~~~~~~~~a~~~yf~~h~eaD-~~Ha~Ealkiv~~~~~t--~---------E~~~~~~~~~~~~~D~lw~fLda~~ 226 (242)
T COG5424 159 SGLPYFNGFSDAAAYAYFREHLEAD-VRHAEEALKIVLELAGT--R---------ELQDQVLDALQKSLDVLWLFLDARM 226 (242)
T ss_pred cCchhhcCcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhc--h---------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 11111 1124444332222 44566667777776542 2 5567888999999999999988765
Q ss_pred c
Q 026372 237 G 237 (239)
Q Consensus 237 ~ 237 (239)
.
T Consensus 227 ~ 227 (242)
T COG5424 227 Q 227 (242)
T ss_pred h
Confidence 4
No 8
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=99.16 E-value=6.5e-09 Score=88.67 Aligned_cols=197 Identities=8% Similarity=0.024 Sum_probs=136.9
Q ss_pred CCCchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHH
Q 026372 10 GKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILG 89 (239)
Q Consensus 10 ~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~ 89 (239)
....|.+.|..... ..-.+|||-+.+.+|.|+++.++.|..|=|+|-..+.+..+-+++++++ .+..+.+++
T Consensus 10 s~~eF~~~L~~~~~---~yh~~HPF~~~~~~Gklt~~qlq~wa~nrYyyq~~~P~kdaaI~S~c~D-----~e~Rr~w~~ 81 (246)
T PRK05157 10 SPEEFEAALRAIGA---RYHIHHPFHRLLHEGKLTREQIQAWVANRFYYQINIPLKDAAILSNCPD-----RETRREWRQ 81 (246)
T ss_pred CHHHHHHHHHHHHH---hhcccChHHHHHHcCCCCHHHHHHHHHHhchhhccchHHHHHHHHcCCC-----HHHHHHHHH
Confidence 34457777777663 2233899999999999999999999999999999999999999999999 566666665
Q ss_pred HHh-h-----HHHHHHHHHHHHHHcCCCCC---CC-CCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhc
Q 026372 90 GMA-G-----LHDEIAWFKKEASKWGVELS---ET-VPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHC 159 (239)
Q Consensus 90 ~~~-~-----i~~E~~~h~~~~~~~gi~~~---~~-~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~ 159 (239)
.|- . -.+.++++.++.+.+|++.+ +. ...|.|+..++-....+ ...++.+++++++. |.---.|-+.
T Consensus 82 ri~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~lP~tr~aVday~~~~-r~~~~~eavas~lt-E~~~P~I~~~- 158 (246)
T PRK05157 82 RILDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGVLPGVRFAVDAYVNFA-RRAPWLEAVASSLT-ELFAPQIHQE- 158 (246)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccCChHHHHHHHHHHHHH-ccCCHHHHHHHHHH-HHhhhHHHHH-
Confidence 541 1 12357899999999999974 34 36799999898888885 66799999988765 3322222211
Q ss_pred cCCCCCCCchHHHHhcccC--ChH----HHHHH-------HHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHH
Q 026372 160 LEPDTNTPPELQEVCQRWG--NDG----FGQYC-------HSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 226 (239)
Q Consensus 160 ~~~~~~~~~~y~~Wi~~y~--s~~----f~~~v-------~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~ 226 (239)
....|-+.|. +++ |.... +...+++-+.+ .++ ++++++.++-...|.
T Consensus 159 ---------ri~gl~~~Y~~~~~e~l~yF~~h~~~a~~Dvehal~~~l~~~--~t~---------e~q~~al~al~~k~d 218 (246)
T PRK05157 159 ---------RLAGWPEHYPWIDPEGLAYFRSRLTQAPRDVEHGLAYVLDHA--TTR---------EQQERALEALQFKLD 218 (246)
T ss_pred ---------HHHHHHHHCCCCCHHHHHHHHHHhhccchhHHHHHHHHHHHc--CCH---------HHHHHHHHHHHHHHH
Confidence 1223333332 222 21111 11122222222 244 778899999999999
Q ss_pred HHHHhchhhhc
Q 026372 227 HEVEFWNMSRG 237 (239)
Q Consensus 227 ~E~~Fwd~a~~ 237 (239)
.=+.|+|..+.
T Consensus 219 ~Lw~~LDai~~ 229 (246)
T PRK05157 219 VLWSMLDALYM 229 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 9
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=99.01 E-value=5.8e-08 Score=82.27 Aligned_cols=192 Identities=11% Similarity=0.056 Sum_probs=128.8
Q ss_pred hHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH-h
Q 026372 14 VIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM-A 92 (239)
Q Consensus 14 ~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~-~ 92 (239)
|-..|...... .--.+|||-+.+.+|.|+++.++.|..|=|+|...+.+..+-+++++++ .+..+.++..| .
T Consensus 6 f~~~Lr~~~~~--~yh~~HPF~~~~~~GkLt~~ql~~wa~nrYyyq~~iP~kdAAi~s~c~D-----~e~Rr~wl~ri~D 78 (239)
T TIGR02111 6 FEAALRDIGAR--RYHDLHPFHALLHDGKLTRDQVQAWVLNRYYYQANIPLKDAAILARCPD-----PQLRRIWRQRILD 78 (239)
T ss_pred HHHHHHHHhcc--cccccCcHHHHHhcCCCCHHHHHHHHHHhhhhhhcccHHHHHHHHcCCC-----HHHHHHHHHHHHH
Confidence 44445443332 2235699999999999999999999999999999999999999999999 56666666554 1
Q ss_pred h--H---HHHHHHHHHHHHHcCCCCC---CCC-CchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026372 93 G--L---HDEIAWFKKEASKWGVELS---ETV-PQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPD 163 (239)
Q Consensus 93 ~--i---~~E~~~h~~~~~~~gi~~~---~~~-~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~ 163 (239)
. . .+.++++.++.+.+|++.+ +.. ..|.|+..++-....+ ...++.+++++++. |.---+|-+.
T Consensus 79 hdG~~~~~ggie~WlrfaealGl~re~v~s~~~~lP~trfaVday~~f~-r~~~~~eavasslT-E~f~P~I~~~----- 151 (239)
T TIGR02111 79 HDGDHEEDGGIERWLRLAEAVGLDREYVLSTRGVLPGTRFAVDAYVHFV-REKSLLEAIASSLT-ELFAPQIHSE----- 151 (239)
T ss_pred hcCCCCCCCcHHHHHHHHHHhCCCHHHHhcccCCCHHHHHHHHHHHHHH-hcCCHHHHHHHHHH-HHHhHHHHHH-----
Confidence 1 0 1357899999999999974 333 3688887777666663 56689999988665 4322222221
Q ss_pred CCCCchHHHHhccc--CChH----HHHHHH-------HHHHH-HHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHH
Q 026372 164 TNTPPELQEVCQRW--GNDG----FGQYCH-------SLKKI-ANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEV 229 (239)
Q Consensus 164 ~~~~~~y~~Wi~~y--~s~~----f~~~v~-------~~~~~-ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~ 229 (239)
....|.+.| .+++ |..... ...++ ++.. .++ ++++++.++-...|..=+
T Consensus 152 -----ri~gl~~~Y~~~~~e~l~yF~~r~~qa~rd~e~~l~~~l~~~---~t~---------e~Q~~~l~al~fk~dvLw 214 (239)
T TIGR02111 152 -----RVAGMLQHYDFIDDAALAYFRKRLTQAPRDVEFGLDYVLDHA---TTR---------EKQEAALEALTFKCDVLW 214 (239)
T ss_pred -----HHHhHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---CCH---------HHHHHHHHHHHHHHHHHH
Confidence 122333333 2233 221111 11111 2222 244 678899999999999999
Q ss_pred Hhchhhh
Q 026372 230 EFWNMSR 236 (239)
Q Consensus 230 ~Fwd~a~ 236 (239)
.|+|..+
T Consensus 215 ~~LDal~ 221 (239)
T TIGR02111 215 AQLDALY 221 (239)
T ss_pred HHHHHHH
Confidence 9999866
No 10
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=97.51 E-value=0.02 Score=47.48 Aligned_cols=168 Identities=13% Similarity=0.105 Sum_probs=103.1
Q ss_pred chHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHh
Q 026372 13 GVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMA 92 (239)
Q Consensus 13 ~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~ 92 (239)
++++.|.....+.=+.+-+|||++.|..|+++.+.+..||.+-|.+....-+.+......... . .... .
T Consensus 1 ~~~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~s~~~Y~~~L~~~~~~~~~lE~~l~~~~~~~~~------~--~~~~---~ 69 (203)
T cd00232 1 SLSEELRAATRQLHEEAENLVFMKDLLKGFLSREGYARFLANLYLVYRALEALLEASKDNPYL------A--PLYL---P 69 (203)
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHccCCccc------c--cccC---c
Confidence 478899999999999999999999999999999999999999999999888877765432111 0 0000 0
Q ss_pred hHHHHHHHHHHHHHHcCCCCC--CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH----HHHhhccCCCCCC
Q 026372 93 GLHDEIAWFKKEASKWGVELS--ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQ----ESFAHCLEPDTNT 166 (239)
Q Consensus 93 ~i~~E~~~h~~~~~~~gi~~~--~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~----~i~~~~~~~~~~~ 166 (239)
...+ ..+-.+-++.+|.+.. ...|.|++ .|.+++...+ ..+.+.++.+++..+-+=. .|.+.+.+... .
T Consensus 70 ~~~r-~~~L~~DL~~lg~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~lg~~YV~egs~l~GG~~i~~~l~~~~~-~ 144 (203)
T cd00232 70 ELER-AAALEKDLAYLGGSDWRVREPPLPAA-AYAARLREIA--EENPALLLGHAYVRYGADLSGGQVLAKIAQRALL-L 144 (203)
T ss_pred cccc-hHHHHHHHHHHhCCCccccCCCChHH-HHHHHHHHHH--hcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHhC-C
Confidence 0111 1222334455676652 23455666 9999988874 3456667777766553221 11112211111 1
Q ss_pred CchHHHHhcccCChHHHHHHHHHHHHHHHH
Q 026372 167 PPELQEVCQRWGNDGFGQYCHSLKKIANRL 196 (239)
Q Consensus 167 ~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~ 196 (239)
++.=..++..|+.++-...-..+...+|++
T Consensus 145 ~~~~~~f~~~~g~~~~~~~w~~f~~~l~~~ 174 (203)
T cd00232 145 EGKGLAFYAFHGIADRGLFKREFREALDAL 174 (203)
T ss_pred CCccCccccCCCcCCHHHHHHHHHHHHhcC
Confidence 111124566666334455566677777775
No 11
>CHL00168 pbsA heme oxygenase; Provisional
Probab=97.33 E-value=0.03 Score=47.99 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=76.3
Q ss_pred chHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHh
Q 026372 13 GVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMA 92 (239)
Q Consensus 13 ~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~ 92 (239)
+++..|.+..+..=+.+-+.+|++.+..|.++.+.++.+|.|=|..-...-..+..... + .....+. ..
T Consensus 4 ~ls~~Lr~~T~~~H~~aE~~~f~k~ll~g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~~---~------~~~~~~~--~p 72 (238)
T CHL00168 4 NLATQLREGTTKSHSMAENVSFVKSFLGGVIDKKSYRKLVANLYFVYSAIEEEIEKNKE---H------PLIKPIY--FQ 72 (238)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHccC---C------ccccccc--ch
Confidence 68999999999999999999999999999999999999999988877766655554431 1 0000000 01
Q ss_pred hHHHHHHHHHHHHHHcCCCC-CCCCCchHhHHHHHHHHHhc
Q 026372 93 GLHDEIAWFKKEASKWGVEL-SETVPQKANQVYCRFLESLM 132 (239)
Q Consensus 93 ~i~~E~~~h~~~~~~~gi~~-~~~~~~p~~~~Y~~~l~~~a 132 (239)
.+.+--.+-+++.--+|-+. +.++|+|+++.|++.+..++
T Consensus 73 eL~R~~aLe~DL~~l~G~~w~~~~~p~pa~~~Yv~rI~~~~ 113 (238)
T CHL00168 73 ELNRKESLEKDLNYYYGDDWKSIIEPSPATKIYVDRIHKIS 113 (238)
T ss_pred hhhhhHHHHHHHHHHcCCCccccCCCChHHHHHHHHHHHHh
Confidence 12222233333433445554 35788999999999999995
No 12
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=96.20 E-value=0.13 Score=42.50 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=82.2
Q ss_pred CchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH
Q 026372 12 GGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM 91 (239)
Q Consensus 12 ~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~ 91 (239)
|+|+..|.+...+.=+.+-+++|++.+.+|.++.+.+..+|.+=|.+....-..+......... ..+ ..
T Consensus 1 ~~l~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~~~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~------~~~--~~--- 69 (205)
T PF01126_consen 1 MSLSQRLREATRDLHERLEKSPFMKDLFAGDLSRDDYARFLQAFYHVYRALEAALDRNRDDPAL------APL--YF--- 69 (205)
T ss_dssp -SHHHHHHHHTHHHHHHHHTSHHHHHHHTTSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTT------GGG--S----
T ss_pred CcHHHHHHHHHHHHHHHHHcchhHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc------ccc--cC---
Confidence 7899999999999999999999999999999999999999999999888877666654322211 000 00
Q ss_pred hhHHHHHHHHHHHHHHcCCCC--CCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Q 026372 92 AGLHDEIAWFKKEASKWGVEL--SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAV 151 (239)
Q Consensus 92 ~~i~~E~~~h~~~~~~~gi~~--~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~ 151 (239)
..+.+--.+-.++ ..++.+. ...++.|++.+|..++..++ .. +...++..++..+-.
T Consensus 70 ~~l~R~~~L~~DL-~~l~~~~~~~~~~~~~a~~~~~~~i~~~~-~~-~p~~~lg~~YV~egs 128 (205)
T PF01126_consen 70 PELRRSAALEADL-AALGGPDWRDDIEPSPATQAYVPHIRELA-ES-SPALLLGHAYVLEGS 128 (205)
T ss_dssp GHHHTHHHHHHHH-HHHHCTTHHHHCHHHHHHHHHHHHHHHHH-HH-SGGGHHHHHHHHHHH
T ss_pred cchhHHHHHHHHH-HHhhCCCcccccCCChhHHHHHHHHHHHH-cc-CHHHHHHHHHHHHHH
Confidence 0011111111222 2222221 23567899999999998885 22 444566655554443
No 13
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=96.02 E-value=0.16 Score=42.51 Aligned_cols=187 Identities=10% Similarity=0.169 Sum_probs=102.3
Q ss_pred HhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHhhHHHHHH--------
Q 026372 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIA-------- 99 (239)
Q Consensus 28 ~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~i~~E~~-------- 99 (239)
.+.|.||++.|..-++ +....|+.|=-+|-++-.-.+-.++.++..... ......+. .++.+|..
T Consensus 20 s~nn~~~~~~i~t~S~--~~~~~vi~~ys~F~~~~~~~l~~A~~~~~~~~~--~~V~~El~---~Ni~EE~G~~~gk~sH 92 (231)
T PF12981_consen 20 SINNNPFLSHISTASF--SQKELVIKQYSVFPKYNCGMLQRAAYCIRGFCW--PGVAQELQ---RNINEEMGEGCGKISH 92 (231)
T ss_dssp -TTT-CCHHGCCC--H--HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---HHHHHHHH---HHHHHHTTTTTTT--H
T ss_pred hhcCCHHHHHhhhhhH--HHHHHHHHHHhHhhHHHHHHHHHHHHHHhhcCC--cHHHHHHH---HhHHHhcCCCCCCcch
Confidence 4567899988876544 455555555555888777777777777766433 12233332 34555554
Q ss_pred --HHHHHHHH-cCCCCCCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHH-------HHHHHHHhhccCCCC-CCCc
Q 026372 100 --WFKKEASK-WGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIE-------AVYQESFAHCLEPDT-NTPP 168 (239)
Q Consensus 100 --~h~~~~~~-~gi~~~~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~-------~~Y~~i~~~~~~~~~-~~~~ 168 (239)
++++-|.. +|.+..+..|+++|.....=++.+...+ + -..+-++++.| .+-.+|..++..... +...
T Consensus 93 y~~~~~~l~~~~~~~v~~~~Ps~aT~~fl~sv~~L~t~~-~-s~vlGa~YAtE~~AIpEl~ll~ei~~~la~rk~~~~~~ 170 (231)
T PF12981_consen 93 YVVFRKALHTYFGFDVNNRMPSVATTHFLDSVLALFTWD-S-SEVLGACYATEAAAIPELQLLYEIVNELAQRKGLHNSW 170 (231)
T ss_dssp HHHHHHHHHHHHS---TT----HHHHHHHHHHHHHCTS--H-HHHHHHHHHHHHHHHHHHHHHHHHHTTT---HHHHH--
T ss_pred HHHHHHHHHHHhCCcccccCCcHHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Confidence 66665555 8988888999999999999999885332 2 34444444433 223333333321100 0111
Q ss_pred hHHHHhcccCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchh
Q 026372 169 ELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNM 234 (239)
Q Consensus 169 ~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~Fwd~ 234 (239)
...++.+.|-+.-=.+..+.+.+.|+..... . ++....++=|..++..=..||+.
T Consensus 171 s~l~F~d~HlDg~E~~H~d~L~~~l~~~i~~--e---------~q~~~f~~Gf~~mI~~m~~wW~~ 225 (231)
T PF12981_consen 171 SQLDFYDWHLDGTEQEHKDGLRQFLASYIDT--E---------EQMPLFKDGFLAMIDIMEDWWKE 225 (231)
T ss_dssp ----HHHHHCS----HHHHHHHHHHHTT--G--G---------G-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcchHHHHHHHHHHHHHHHHcCc--c---------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 1125667777666678888899888876542 2 45778888999998888888875
No 14
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.12 Score=43.17 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=74.7
Q ss_pred hHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH-h
Q 026372 14 VIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM-A 92 (239)
Q Consensus 14 ~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~f~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~-~ 92 (239)
+...|+.-.+..-..+-+.-|+.-+-+|-++.+.|+..+.|-|....++-+....- .+ . ..+.... .
T Consensus 3 la~~lR~gt~~ah~~aEnv~fmkcfLkg~V~~e~f~kl~~n~yf~ysaleaa~~~~----~d-----~---~~l~~i~fp 70 (238)
T COG5398 3 LAFKLRQGTQKAHTVAENVGFMKCFLKGVVERESFRKLLANLYFVYSALEAATQIH----KD-----N---PILSSIYFP 70 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh----cc-----C---chhhhccch
Confidence 45566665565556666677999999999999999999999999888776544322 22 0 1122111 1
Q ss_pred hHHHHHHHHHHHHHHcCCCC-CCCCCchHhHHHHHHHHHhcC
Q 026372 93 GLHDEIAWFKKEASKWGVEL-SETVPQKANQVYCRFLESLMS 133 (239)
Q Consensus 93 ~i~~E~~~h~~~~~~~gi~~-~~~~~~p~~~~Y~~~l~~~a~ 133 (239)
.+++-..+-+++...+|-+. +++.++|++.+|+.+++.+++
T Consensus 71 ~lnr~~tle~dl~~yyg~nwre~I~~sp~t~~yv~rv~~iaa 112 (238)
T COG5398 71 ELNRKATLEKDLLYYYGNNWRENIQPSPATIAYVDRVRYIAA 112 (238)
T ss_pred hhhhHHHhhcCHHHHhcccHHHhcCcChhHHHHHHHHHHHHh
Confidence 23344455566666777444 578999999999999999963
No 15
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=89.68 E-value=1 Score=33.09 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCCCC----CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHH
Q 026372 96 DEIAWFKKEASKWGVELS----ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESF 156 (239)
Q Consensus 96 ~E~~~h~~~~~~~gi~~~----~~~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~ 156 (239)
....+++++++.+|++.+ .....|.+.++.+.++..+.....+..++.++...|.+...+.
T Consensus 17 ~H~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~ 81 (106)
T PF14518_consen 17 SHPELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSHYPEALGALLATESSVPQIY 81 (106)
T ss_dssp -HHHHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHH
Confidence 567899999999999975 2235578999999998875444556677777766665544433
No 16
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=35.06 E-value=2.9e+02 Score=23.63 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=60.8
Q ss_pred CCchHhHHHHHHHHHhcCCCccHHHHHHHH-------HHHHHHHHHHHhhccCCCCCCCchHHHHhcccC---ChHHHHH
Q 026372 116 VPQKANQVYCRFLESLMSPEVDYTVAITVF-------WAIEAVYQESFAHCLEPDTNTPPELQEVCQRWG---NDGFGQY 185 (239)
Q Consensus 116 ~~~p~~~~Y~~~l~~~a~~~~~~~~~l~a~-------~~c~~~Y~~i~~~~~~~~~~~~~~y~~Wi~~y~---s~~f~~~ 185 (239)
...++.+.++++=..+. .++..-+..+|+ .|- ++..|.+.+ ......-+.+.--++.+. +++-+-.
T Consensus 120 ~~p~~~~~Fv~~Tf~~i-~~~~~H~iAAaFtfGREdlIP~--MF~~il~~~-~~~~~~~~~f~yYL~RHIElDgdeHgPl 195 (232)
T PF11251_consen 120 DVPEPAKRFVRFTFEII-AEGKPHEIAAAFTFGREDLIPD--MFRSILKDL-NIPPGQLPTFRYYLERHIELDGDEHGPL 195 (232)
T ss_pred CCCHHHHHHHHHHHHHH-hcCCHHHHHHHHHhccccchHH--HHHHHHHHh-cCCccccHHHHHHHHhhhhcCCCcchHH
Confidence 34467888998888874 444443444443 332 244555544 211112233333455553 3333433
Q ss_pred HHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchh
Q 026372 186 CHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNM 234 (239)
Q Consensus 186 v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~Fwd~ 234 (239)
-.+++.+++.. ++ ..++++..+-.++++.-+.|||.
T Consensus 196 ---A~~ml~~Lcg~-D~---------~kw~ea~~aa~~AL~~Ri~LWD~ 231 (232)
T PF11251_consen 196 ---AMQMLEELCGD-DP---------QKWQEAEQAAKEALEARIALWDG 231 (232)
T ss_pred ---HHHHHHHHHCC-CH---------HHHHHHHHHHHHHHHHHHHhhcC
Confidence 44557787743 33 78999999999999999999995
No 17
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=33.36 E-value=1.3e+02 Score=19.10 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026372 182 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 182 f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~ 227 (239)
|.+....+..+++++-... -.++...+.|.+++.+
T Consensus 1 fEe~~~~Le~Iv~~Le~~~-----------~sLdes~~lyeeg~~l 35 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGE-----------LSLDESLKLYEEGMEL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT------------S-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHH
Confidence 5677788888888875432 3477888888888764
No 18
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=28.54 E-value=88 Score=22.40 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=23.7
Q ss_pred hcccCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026372 174 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 174 i~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~ 227 (239)
|..|+-.+|-++|..+.+.- ..++ +....+...|.+.+.+
T Consensus 7 i~dyTE~EFl~~v~~i~~~~-----~~~e---------e~~d~lv~hF~~iteH 46 (85)
T PF01320_consen 7 ISDYTESEFLEFVKEIFNAE-----LKTE---------EEHDELVDHFEKITEH 46 (85)
T ss_dssp GGGSBHHHHHHHHHHHHHTC-----SSSC---------HHHHHHHHHHHHHH--
T ss_pred HHHhhHHHHHHHHHHHHcCC-----CCCH---------HHHHHHHHHHHHcCCC
Confidence 56677666666555553321 1233 6788888888887764
No 19
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=24.98 E-value=2.5e+02 Score=19.82 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026372 181 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 181 ~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~ 227 (239)
.|.+....+..+|.++=... -.++....+|.+++.+
T Consensus 11 sfE~~l~eLE~IV~~LE~Ge-----------l~Le~sl~~~erG~~L 46 (81)
T COG1722 11 SFEEALAELEEIVESLESGE-----------LPLEEALKEFERGMAL 46 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCc-----------ccHHHHHHHHHHHHHH
Confidence 68889999999999874322 4577888888888765
No 20
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.89 E-value=2.2e+02 Score=20.01 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026372 180 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 180 ~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~ 227 (239)
..|.+...++..+|+++-... -.++...+.|.+++.+
T Consensus 7 ~sfEeal~~LEeIV~~LE~~~-----------l~Lees~~lyeeG~~L 43 (80)
T PRK14067 7 ADFEQQLARLQEIVDALEGGD-----------LPLEESVALYKEGLGL 43 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 468889999999999885432 2366777777777664
No 21
>PF15565 Imm16: Immunity protein 16
Probab=24.54 E-value=1.3e+02 Score=22.45 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHh
Q 026372 185 YCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 231 (239)
Q Consensus 185 ~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~E~~F 231 (239)
-++...+.|++++...+. +.+..+..+|-..+.+|++|
T Consensus 14 e~e~Fe~~L~~l~~~~d~---------~~I~~L~~~F~D~~d~eVmf 51 (106)
T PF15565_consen 14 ECEEFEEALNELAKYPDN---------DVIDDLCLIFDDETDHEVMF 51 (106)
T ss_pred HHHHHHHHHHHHHhcCCH---------hHHHHHHHHhcCccchHHHH
Confidence 356677777777766665 67777888887777777776
No 22
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=22.11 E-value=4e+02 Score=20.99 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhccCCCCCChhHHHHHHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHH
Q 026372 47 SFKKWLGQDYIFV-REFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYC 125 (239)
Q Consensus 47 ~f~~YL~QD~~Yl-~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~i~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~ 125 (239)
.|.. -.+|-++. ....+++...+.++.+ .+-...|-.-+....+.+..-+..++.+|.+++. .++++...-+
T Consensus 5 ~~~~-~L~d~y~aE~q~~~~l~~~~~~a~~-----~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~-~~c~~~~gl~ 77 (159)
T PF05974_consen 5 LFID-ELRDLYSAEKQLLKALPKLAEAASS-----PELKAALEEHLEETEQQIERLEQIFEALGADPSA-EKCDAMEGLV 77 (159)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHH-SS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-C-HH-HHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc-CcchHHHHHH
Confidence 3444 45677776 6899999999999998 4555555544555566777888899999988753 2345555555
Q ss_pred HHHH
Q 026372 126 RFLE 129 (239)
Q Consensus 126 ~~l~ 129 (239)
.-..
T Consensus 78 ~e~~ 81 (159)
T PF05974_consen 78 AEAQ 81 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 23
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.06 E-value=2.8e+02 Score=19.27 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026372 180 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 180 ~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~ 227 (239)
..|.+...++..+|+++-... -.++...+.|.+++.+
T Consensus 6 ~sfEeal~~Le~IV~~LE~gd-----------l~Leesl~lyeeG~~L 42 (76)
T PRK14068 6 QSFEEMMQELEQIVQKLDNET-----------VSLEESLDLYQRGMKL 42 (76)
T ss_pred cCHHHHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHH
Confidence 468889999999999885432 3477788888887765
No 24
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.97 E-value=2.8e+02 Score=19.38 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026372 180 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 180 ~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~ 227 (239)
..|.+...++..+|+++-... -.++.....|.+++.+
T Consensus 10 ~sfEea~~~LEeIv~~LE~~~-----------l~Lees~~lyeeg~~L 46 (80)
T PRK00977 10 LSFEEALAELEEIVTRLESGD-----------LPLEESLAAFERGVAL 46 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 468889999999999885432 3477788888887765
No 25
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.92 E-value=2.7e+02 Score=19.26 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHH
Q 026372 180 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 180 ~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~l~~iF~~~~~~ 227 (239)
..|.+...++..+|+++-... -.++...+.|.+++.+
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~-----------l~Leesl~~ye~G~~L 42 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGS-----------ASLEDSLDMYQKGIEL 42 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 368888899999999874432 2467777888877764
Done!