Query 026374
Match_columns 239
No_of_seqs 49 out of 51
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 07:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06664 IscU_like Iron-sulfur 41.2 26 0.00056 27.6 2.6 33 134-166 37-69 (123)
2 TIGR01994 SUF_scaf_2 SUF syste 40.4 26 0.00056 28.8 2.6 32 133-164 39-70 (137)
3 TIGR03419 NifU_clost FeS clust 29.4 57 0.0012 26.2 2.9 28 133-160 35-62 (121)
4 PRK11325 scaffold protein; Pro 25.9 68 0.0015 26.1 2.8 33 134-166 41-74 (127)
5 TIGR01999 iscU FeS cluster ass 19.1 1.6E+02 0.0034 23.7 3.6 33 134-166 39-72 (124)
6 CHL00132 psaF photosystem I su 18.1 89 0.0019 28.0 2.1 34 1-34 1-35 (185)
7 PF07277 SapC: SapC; InterPro 17.8 1.7E+02 0.0037 26.0 3.8 44 112-158 32-76 (221)
8 PF04202 Mfp-3: Foot protein 3 16.3 90 0.002 24.0 1.5 32 1-33 1-33 (71)
9 PF08662 eIF2A: Eukaryotic tra 15.6 4.7E+02 0.01 22.2 5.9 72 74-156 81-157 (194)
10 cd01759 PLAT_PL PLAT/LH2 domai 15.2 3.2E+02 0.007 22.2 4.5 48 104-152 17-66 (113)
No 1
>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.
Probab=41.17 E-value=26 Score=27.63 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=25.1
Q ss_pred EEEEEEEeCceEEEEEEeccccCCCCCCCCeee
Q 026374 134 FTLALEFKKGRLQNLYWKRDGCSKCSGNSNFVC 166 (239)
Q Consensus 134 fTLV~ef~kG~lq~L~W~~~gC~~C~g~~~~~C 166 (239)
+++-+.+++|+|+++.|+..||..|....+..|
T Consensus 37 v~l~l~i~~~~I~d~~f~~~GC~i~~Asas~~~ 69 (123)
T cd06664 37 ITLYLKVEDGRITDAKFQGFGCAISIASASLLT 69 (123)
T ss_pred EEEEEEEcCCEEEEEEEEecCcHHHHHHHHHHH
Confidence 566677788999999999999998764333333
No 2
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.
Probab=40.42 E-value=26 Score=28.83 Aligned_cols=32 Identities=19% Similarity=0.579 Sum_probs=24.7
Q ss_pred eEEEEEEEeCceEEEEEEeccccCCCCCCCCe
Q 026374 133 SFTLALEFKKGRLQNLYWKRDGCSKCSGNSNF 164 (239)
Q Consensus 133 sfTLV~ef~kG~lq~L~W~~~gC~~C~g~~~~ 164 (239)
.+++-+.+++|+|+++.|+..||..|....+.
T Consensus 39 ~i~l~l~v~~~~I~d~~f~~~GCais~Asas~ 70 (137)
T TIGR01994 39 EITLTVKLEGDRIEDIAFEGEGCSISQASASM 70 (137)
T ss_pred EEEEEEEEcCCeEEEEEEEecccHHHHHHHHH
Confidence 35666677899999999999999987643333
No 3
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=29.42 E-value=57 Score=26.25 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=23.3
Q ss_pred eEEEEEEEeCceEEEEEEeccccCCCCC
Q 026374 133 SFTLALEFKKGRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 133 sfTLV~ef~kG~lq~L~W~~~gC~~C~g 160 (239)
.+++-+.+++|+|+.+.|...||..|..
T Consensus 35 ~i~l~l~i~~~~I~d~~f~~~GC~is~A 62 (121)
T TIGR03419 35 IMKIFLKVEDDIIKDVKFKTFGCGAAIA 62 (121)
T ss_pred EEEEEEEEcCCEEEEEEEEEeccHHHHH
Confidence 4667778889999999999999997653
No 4
>PRK11325 scaffold protein; Provisional
Probab=25.89 E-value=68 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.503 Sum_probs=24.6
Q ss_pred EEEEEEEe-CceEEEEEEeccccCCCCCCCCeee
Q 026374 134 FTLALEFK-KGRLQNLYWKRDGCSKCSGNSNFVC 166 (239)
Q Consensus 134 fTLV~ef~-kG~lq~L~W~~~gC~~C~g~~~~~C 166 (239)
+++-+.++ .|+|+++.|+..||..|....+..|
T Consensus 41 i~l~l~v~~~~~I~d~~f~~~GC~is~Asas~~~ 74 (127)
T PRK11325 41 MKLQIKVNDEGIIEDAKFKTYGCGSAIASSSLVT 74 (127)
T ss_pred EEEEEEECCCCeEEEEEEEeeCCHHHHHHHHHHH
Confidence 56666776 6999999999999998754334333
No 5
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=19.13 E-value=1.6e+02 Score=23.74 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=23.7
Q ss_pred EEEEEEEeC-ceEEEEEEeccccCCCCCCCCeee
Q 026374 134 FTLALEFKK-GRLQNLYWKRDGCSKCSGNSNFVC 166 (239)
Q Consensus 134 fTLV~ef~k-G~lq~L~W~~~gC~~C~g~~~~~C 166 (239)
+++-+.+++ |+|.++.|+..||..+....+..|
T Consensus 39 i~l~l~v~~~~~I~d~~f~~~GC~~s~Asas~~~ 72 (124)
T TIGR01999 39 MKLQIKVNDDGIIEDAKFKTFGCGSAIASSSLAT 72 (124)
T ss_pred EEEEEEECCCCeEEEEEEEecCcHHHHHHHHHHH
Confidence 456667765 999999999999997654333333
No 6
>CHL00132 psaF photosystem I subunit III; Validated
Probab=18.13 E-value=89 Score=28.05 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=20.1
Q ss_pred CchhhHHHHHHhhheeeeec-cCCCCccCCCCCCc
Q 026374 1 METIFFFLLLTTSCFSFLVE-SSDNNHMYSPCGDT 34 (239)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~~~~n~vy~PC~d~ 34 (239)
|-+++.++|++++.+.+++. +...-.---||+|+
T Consensus 1 mrrl~~l~l~~~l~~~~~p~~a~ad~agLtpCses 35 (185)
T CHL00132 1 MKKFNLLFLLLAALLLFNPIAAFADVAGLTPCSES 35 (185)
T ss_pred ChhHHHHHHHHHHHHhcCCccccccccCCccCccC
Confidence 66777677666666665552 33333345788875
No 7
>PF07277 SapC: SapC; InterPro: IPR010836 This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance [].
Probab=17.81 E-value=1.7e+02 Score=26.05 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=30.8
Q ss_pred cccceeeccceEEeeCcce-EEeEEEEEEEeCceEEEEEEeccccCCC
Q 026374 112 GRKYAARSLPAFVANSTYT-VTSFTLALEFKKGRLQNLYWKRDGCSKC 158 (239)
Q Consensus 112 g~k~aarS~P~~va~~~~~-v~sfTLV~ef~kG~lq~L~W~~~gC~~C 158 (239)
=...|++..|+++..+..+ -...-.++-|++| +||+++ +|-|.-
T Consensus 32 E~~~a~~~yPIvF~~~~~~g~~~~vAllGl~~~--eNLfv~-~G~W~~ 76 (221)
T PF07277_consen 32 EFASAARHYPIVFTKDAQTGQFQPVALLGLEPG--ENLFVD-DGQWQA 76 (221)
T ss_pred HHHHHHHhCCEEEEecCCCCcEEEEEEEeecCC--ceEEEE-CCCcCC
Confidence 3445678999998775542 1233466788888 899999 787764
No 8
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=16.27 E-value=90 Score=24.04 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=14.0
Q ss_pred CchhhHHHHHHhh-heeeeeccCCCCccCCCCCC
Q 026374 1 METIFFFLLLTTS-CFSFLVESSDNNHMYSPCGD 33 (239)
Q Consensus 1 ~~~~~~~~~l~~~-~~~~~~~~~~~n~vy~PC~d 33 (239)
|-.++.-+||+.| |..++++ +|....|+|=-.
T Consensus 1 mnn~Si~VLlaLvLIg~fAVq-Sdag~~y~p~y~ 33 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQ-SDAGYYYYPGYN 33 (71)
T ss_pred CCchhHHHHHHHHHHhhheee-ecCccccCCCCC
Confidence 3344444444322 2333333 344566777543
No 9
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=15.57 E-value=4.7e+02 Score=22.18 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=41.4
Q ss_pred CCceeEEeeeecceEEEEEecCCC-----CCCCCCCceEEEEccccceeeccceEEeeCcceEEeEEEEEEEeCceEEEE
Q 026374 74 STSQIAVFRPKVDEISLLTINTSS-----FSPDNYGGYMVAFAGRKYAARSLPAFVANSTYTVTSFTLALEFKKGRLQNL 148 (239)
Q Consensus 74 ~~~~~avFrpkVDeislL~in~s~-----~~~~~~g~~mVA~ag~k~aarS~P~~va~~~~~v~sfTLV~ef~kG~lq~L 148 (239)
...++.+|.++.+.+.-+- ... ++|. +-+++++|..-.. --+.+-+ +.....+.+++......+
T Consensus 81 ~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~---G~~l~~~g~~n~~--G~l~~wd----~~~~~~i~~~~~~~~t~~ 149 (194)
T PF08662_consen 81 MPAKVTLYDVKGKKIFSFG--TQPRNTISWSPD---GRFLVLAGFGNLN--GDLEFWD----VRKKKKISTFEHSDATDV 149 (194)
T ss_pred CCcccEEEcCcccEeEeec--CCCceEEEECCC---CCEEEEEEccCCC--cEEEEEE----CCCCEEeeccccCcEEEE
Confidence 4458888888866655442 222 4555 3477777754110 0011211 124466788888888899
Q ss_pred EEeccccC
Q 026374 149 YWKRDGCS 156 (239)
Q Consensus 149 ~W~~~gC~ 156 (239)
.|..+|=.
T Consensus 150 ~WsPdGr~ 157 (194)
T PF08662_consen 150 EWSPDGRY 157 (194)
T ss_pred EEcCCCCE
Confidence 99887543
No 10
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=15.18 E-value=3.2e+02 Score=22.18 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=30.6
Q ss_pred CceEEEEccccceeeccceEEee-CcceEEeEEEE-EEEeCceEEEEEEec
Q 026374 104 GGYMVAFAGRKYAARSLPAFVAN-STYTVTSFTLA-LEFKKGRLQNLYWKR 152 (239)
Q Consensus 104 g~~mVA~ag~k~aarS~P~~va~-~~~~v~sfTLV-~ef~kG~lq~L~W~~ 152 (239)
|..-|++.|.+..-+..|+.... ..+. +.-.|+ .+.|-|.|+.+.|.=
T Consensus 17 g~~~vsL~G~~g~s~~~~i~~g~l~pg~-tys~li~~d~dvG~l~~Vkf~W 66 (113)
T cd01759 17 GTILVSLYGNKGNTRQYEIFKGTLKPGN-TYSAFIDVDVDVGPLTKVKFIW 66 (113)
T ss_pred ceEEEEEEcCCCCccceEEEeeeecCCC-EEEEEEEccCCCCCEEEEEEEE
Confidence 44688999988766666665311 1111 333455 899999999876553
Done!