Query 026374
Match_columns 239
No_of_seqs 49 out of 51
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 12:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq4_A Iron-sulfur cluster bio 40.8 25 0.00085 27.9 3.8 27 134-160 43-69 (138)
2 2z7e_A ISCU protein, NIFU-like 35.2 27 0.00093 28.6 3.2 31 133-163 39-71 (157)
3 1su0_B NIFU like protein ISCU; 34.1 32 0.0011 28.1 3.4 28 133-160 43-70 (159)
4 3lvl_A NIFU-like protein; prot 30.7 42 0.0014 26.3 3.5 28 133-160 41-69 (129)
5 4eb5_C NIFU protein (NIFU-1); 28.9 46 0.0016 27.3 3.6 28 133-160 36-63 (153)
6 1xjs_A NIFU-like protein; SR17 28.7 30 0.001 27.7 2.4 28 133-160 44-71 (147)
7 3dmc_A NTF2-like protein; stru 18.5 1.4E+02 0.0047 22.4 4.2 22 133-154 108-131 (134)
8 4dvc_A Thiol:disulfide interch 16.2 41 0.0014 25.4 0.7 21 111-131 142-162 (184)
9 1jb0_F Photosystem 1 reaction 12.8 35 0.0012 28.8 -0.5 34 1-34 1-34 (164)
10 2qn4_A RASI, alpha-amylase/sub 11.6 66 0.0023 27.2 0.8 22 22-44 22-43 (200)
No 1
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=40.78 E-value=25 Score=27.90 Aligned_cols=27 Identities=7% Similarity=0.397 Sum_probs=22.6
Q ss_pred EEEEEEEeCceEEEEEEeccccCCCCC
Q 026374 134 FTLALEFKKGRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 134 fTLV~ef~kG~lq~L~W~~~gC~~C~g 160 (239)
++|-+.+++|+|+++.|+..||..+..
T Consensus 43 i~l~l~v~~~~I~d~~f~~~GCais~A 69 (138)
T 2qq4_A 43 VEVMVLLEGDTIADIRFQGQGCAISTA 69 (138)
T ss_dssp EEEEEEEETTEEEEEEEEEECCHHHHH
T ss_pred EEEEEEECCCEEEEEEEEecCCHHHHH
Confidence 567777789999999999999997653
No 2
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=35.18 E-value=27 Score=28.63 Aligned_cols=31 Identities=13% Similarity=0.385 Sum_probs=25.0
Q ss_pred eEEEEEEE--eCceEEEEEEeccccCCCCCCCC
Q 026374 133 SFTLALEF--KKGRLQNLYWKRDGCSKCSGNSN 163 (239)
Q Consensus 133 sfTLV~ef--~kG~lq~L~W~~~gC~~C~g~~~ 163 (239)
.++|-+.+ ++|+|+++.|+..||..+...++
T Consensus 39 ~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS 71 (157)
T 2z7e_A 39 AMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSS 71 (157)
T ss_dssp EEEEEEEECTTTCBEEEEEEEEESCTTHHHHHH
T ss_pred EEEEEEEEecCCCeEEEEEEEecCCHHHHHHHH
Confidence 46788888 68999999999999998654333
No 3
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=34.08 E-value=32 Score=28.08 Aligned_cols=28 Identities=14% Similarity=0.618 Sum_probs=23.4
Q ss_pred eEEEEEEEeCceEEEEEEeccccCCCCC
Q 026374 133 SFTLALEFKKGRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 133 sfTLV~ef~kG~lq~L~W~~~gC~~C~g 160 (239)
.++|-+.+++|+|+++.|+..||..+..
T Consensus 43 ~i~l~lkv~~g~I~d~~F~~~GCais~A 70 (159)
T 1su0_B 43 VISLTVKFDEDKIEDIAFAGNGCTISTA 70 (159)
T ss_dssp EEEEEEEESSSSEEEEEEEEECCHHHHH
T ss_pred EEEEEEEECCCEEEEEEEEecCCHHHHH
Confidence 3567777789999999999999997653
No 4
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=30.74 E-value=42 Score=26.31 Aligned_cols=28 Identities=18% Similarity=0.478 Sum_probs=23.0
Q ss_pred eEEEEEEEe-CceEEEEEEeccccCCCCC
Q 026374 133 SFTLALEFK-KGRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 133 sfTLV~ef~-kG~lq~L~W~~~gC~~C~g 160 (239)
.++|-+.++ +|+|+++.|+..||..+..
T Consensus 41 ~i~l~l~v~~~~~I~d~~f~~~GCais~A 69 (129)
T 3lvl_A 41 VMKLQIKVNDEGIIEDARFKTYGCGSAIA 69 (129)
T ss_dssp EEEEEEEECSSSCEEEEEEEEESCHHHHH
T ss_pred EEEEEEEECCCCeEEEEEEEecCCHHHHH
Confidence 367777888 5999999999999997643
No 5
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=28.87 E-value=46 Score=27.25 Aligned_cols=28 Identities=18% Similarity=0.493 Sum_probs=23.4
Q ss_pred eEEEEEEEeCceEEEEEEeccccCCCCC
Q 026374 133 SFTLALEFKKGRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 133 sfTLV~ef~kG~lq~L~W~~~gC~~C~g 160 (239)
.++|-+.+++|+|+++.|+..||..+..
T Consensus 36 ~i~l~lkv~d~~I~D~~F~g~GCais~A 63 (153)
T 4eb5_C 36 LMTIYIKVKDNRIEDIKFQTFGCAAAIA 63 (153)
T ss_dssp EEEEEEEESSSBEEEEEEEEESCHHHHH
T ss_pred EEEEEEEecCCeEEEEEEEEeCcHHHHH
Confidence 3567777799999999999999997653
No 6
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=28.66 E-value=30 Score=27.75 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=23.4
Q ss_pred eEEEEEEEeCceEEEEEEeccccCCCCC
Q 026374 133 SFTLALEFKKGRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 133 sfTLV~ef~kG~lq~L~W~~~gC~~C~g 160 (239)
.++|-+.+++|+|+++.|+..||..+..
T Consensus 44 ~i~l~lkv~~~~I~d~~f~~~GCais~A 71 (147)
T 1xjs_A 44 RIRLTMKLDGDIVEDAKFEGEGCSISMA 71 (147)
T ss_dssp EEEEEEECCSSBCCEEEEEEESSHHHHH
T ss_pred EEEEEEEECCCeEEEEEEEecCCHHHHH
Confidence 3577778889999999999999997643
No 7
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=18.54 E-value=1.4e+02 Score=22.35 Aligned_cols=22 Identities=14% Similarity=0.536 Sum_probs=17.4
Q ss_pred eEEEEEEEeCceEEEE--EEeccc
Q 026374 133 SFTLALEFKKGRLQNL--YWKRDG 154 (239)
Q Consensus 133 sfTLV~ef~kG~lq~L--~W~~~g 154 (239)
.+..++++++|+|..+ ||+.+|
T Consensus 108 ~~~~~f~v~dGkI~~~r~Y~d~~~ 131 (134)
T 3dmc_A 108 RVAVSFDVRGDKICSYREYFGSDG 131 (134)
T ss_dssp EEEEEEEEETTEEEEEEEEECSCS
T ss_pred cEEEEEEEECCEEEEEEEEECCCC
Confidence 4678899999999876 577664
No 8
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=16.16 E-value=41 Score=25.35 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.0
Q ss_pred ccccceeeccceEEeeCcceE
Q 026374 111 AGRKYAARSLPAFVANSTYTV 131 (239)
Q Consensus 111 ag~k~aarS~P~~va~~~~~v 131 (239)
.++++.++++|.|+-|+.+.|
T Consensus 142 ~a~~~gv~gTPtfiINGky~v 162 (184)
T 4dvc_A 142 QFQDSGLTGVPAVVVNNRYLV 162 (184)
T ss_dssp HHHHHTCCSSSEEEETTTEEE
T ss_pred HHHHcCCCcCCEEEECCEEee
Confidence 356788999999999987754
No 9
>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.16.1 PDB: 3pcq_F*
Probab=12.78 E-value=35 Score=28.80 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=4.9
Q ss_pred CchhhHHHHHHhhheeeeeccCCCCccCCCCCCc
Q 026374 1 METIFFFLLLTTSCFSFLVESSDNNHMYSPCGDT 34 (239)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~n~vy~PC~d~ 34 (239)
|-+++.++|++++.+.+++.+...-.---||+|+
T Consensus 1 Mrrl~~~~l~~~~~~~~~p~a~A~~agLtpC~es 34 (164)
T 1jb0_F 1 MRRFLALLLVLTLWLGFTPLASADVAGLVPCKDS 34 (164)
T ss_dssp -----------------------CGGGCEEGGGC
T ss_pred CchHHHHHHHHHHHHccCchhhhhhcCCccCcCC
Confidence 5566655555555555543322222223566653
No 10
>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp}
Probab=11.57 E-value=66 Score=27.25 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=10.0
Q ss_pred CCCCccCCCCCCcceeecCceEE
Q 026374 22 SDNNHMYSPCGDTKVERSDGFTF 44 (239)
Q Consensus 22 ~~~n~vy~PC~d~~v~rgDgft~ 44 (239)
+...+|+|==.+ +++.|..--|
T Consensus 22 a~~~pVlD~~G~-~l~~G~~YyI 43 (200)
T 2qn4_A 22 AAPPPVYDTEGH-ELSADGSYYV 43 (200)
T ss_dssp -CCCBCBCTTSC-BCBTTSCEEE
T ss_pred cCCCceEeCCCC-CCcCCCcEEE
Confidence 344677753222 3555544444
Done!