Query 026374
Match_columns 239
No_of_seqs 49 out of 51
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 12:06:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026374.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026374hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1su0b_ d.224.1.2 (B:) IscU ho 33.9 9.5 0.00069 28.0 2.2 28 133-160 38-65 (136)
2 d1r9pa_ d.224.1.2 (A:) NifU-li 31.6 18 0.0013 26.6 3.4 28 133-160 40-68 (134)
3 d1wfza_ d.224.1.2 (A:) Iron-su 28.3 16 0.0011 27.4 2.5 28 133-160 36-64 (130)
4 d1xjsa_ d.224.1.2 (A:) NifU {B 19.9 16 0.0012 27.1 1.1 28 133-160 44-71 (147)
5 d2q3za1 b.1.18.9 (A:15-145) Tr 19.1 88 0.0064 22.8 5.3 19 34-52 17-35 (131)
6 d2plta_ b.6.1.1 (A:) Plastocya 19.0 25 0.0018 23.3 1.9 27 17-44 4-30 (98)
7 d1xfea2 g.12.1.1 (A:1-44) Liga 15.1 46 0.0034 20.3 2.3 25 155-180 3-27 (44)
8 d1pg5a2 c.78.1.1 (A:147-299) A 11.4 53 0.0039 23.8 2.1 26 191-216 3-29 (153)
9 d1beda_ c.47.1.13 (A:) Disulfi 10.6 35 0.0026 23.9 0.7 21 111-131 139-159 (181)
10 d1un2a_ c.47.1.13 (A:) Disulfi 10.2 39 0.0028 25.8 0.9 21 112-132 43-63 (195)
No 1
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=33.91 E-value=9.5 Score=28.04 Aligned_cols=28 Identities=14% Similarity=0.618 Sum_probs=24.1
Q ss_pred eEEEEEEEeCceEEEEEEeccccCCCCC
Q 026374 133 SFTLALEFKKGRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 133 sfTLV~ef~kG~lq~L~W~~~gC~~C~g 160 (239)
.+++-+.++++++.++.|+..||.-|..
T Consensus 38 ~i~i~l~i~~~~I~di~f~~~GCai~~A 65 (136)
T d1su0b_ 38 VISLTVKFDEDKIEDIAFAGNGCTISTA 65 (136)
T ss_dssp EEEEEEEESSSSEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEcCCeeeEEEEEeccCHHHHH
Confidence 3577788899999999999999998764
No 2
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}
Probab=31.61 E-value=18 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=21.9
Q ss_pred eEEEEEEEeC-ceEEEEEEeccccCCCCC
Q 026374 133 SFTLALEFKK-GRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 133 sfTLV~ef~k-G~lq~L~W~~~gC~~C~g 160 (239)
.+++-+.+++ |.|+++.|+..||..|..
T Consensus 40 ~v~i~l~i~~~~~I~di~f~~~GCais~A 68 (134)
T d1r9pa_ 40 VMQLQIKVDDNGIIEDAKFKTYGCGSAIA 68 (134)
T ss_dssp EEEEEEEECSSSBEEEEEEEEESSSSHHH
T ss_pred EEEEEEEEcCCceEEEEEEEeccCcccHh
Confidence 3556667754 789999999999998753
No 3
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=28.27 E-value=16 Score=27.36 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=21.9
Q ss_pred eEEEEEEEe-CceEEEEEEeccccCCCCC
Q 026374 133 SFTLALEFK-KGRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 133 sfTLV~ef~-kG~lq~L~W~~~gC~~C~g 160 (239)
.+++-+.++ +|+|+++.|...||..|..
T Consensus 36 ~i~i~l~v~~~~~I~di~F~~~GC~is~A 64 (130)
T d1wfza_ 36 VMKLQIQVDEKGKIVDARFKTFGCGSAIA 64 (130)
T ss_dssp EEEEEEEECSSSBEEEEEEECCSCHHHHH
T ss_pred EEEEEEEecCCCeEEEEEEEeeCCchhHH
Confidence 345666774 6899999999999997653
No 4
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Probab=19.91 E-value=16 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=23.7
Q ss_pred eEEEEEEEeCceEEEEEEeccccCCCCC
Q 026374 133 SFTLALEFKKGRLQNLYWKRDGCSKCSG 160 (239)
Q Consensus 133 sfTLV~ef~kG~lq~L~W~~~gC~~C~g 160 (239)
..++-+.+++++|+.+.|+..||..|..
T Consensus 44 ~i~i~l~i~~~~I~d~~f~~~GCai~~A 71 (147)
T d1xjsa_ 44 RIRLTMKLDGDIVEDAKFEGEGCSISMA 71 (147)
T ss_dssp EEEEEEECCSSBCCEEEEEEESSHHHHH
T ss_pred EEEEEEEEcCCceEEEEeeecccHHHHH
Confidence 3567778899999999999999998753
No 5
>d2q3za1 b.1.18.9 (A:15-145) Transglutaminase N-terminal domain {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=19.05 E-value=88 Score=22.75 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.0
Q ss_pred cceeecCceEEEEEeecCC
Q 026374 34 TKVERSDGFTFAIAFASRS 52 (239)
Q Consensus 34 ~~v~rgDgft~giaf~~~~ 52 (239)
-=|.||..|+|.|.|..+.
T Consensus 17 LIVRRGQ~F~i~l~f~~r~ 35 (131)
T d2q3za1 17 LVVRRGQPFWLTLHFEGRN 35 (131)
T ss_dssp CEEETTSCEEEEEEESSSC
T ss_pred eEEECCCcEEEEEEecCcC
Confidence 4589999999999997654
No 6
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=19.00 E-value=25 Score=23.32 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=19.6
Q ss_pred eeeccCCCCccCCCCCCcceeecCceEE
Q 026374 17 FLVESSDNNHMYSPCGDTKVERSDGFTF 44 (239)
Q Consensus 17 ~~~~~~~~n~vy~PC~d~~v~rgDgft~ 44 (239)
+-+...+++-.|+| ..-+|+.||-++|
T Consensus 4 V~vg~~~g~~~F~P-~~i~v~~GdtV~f 30 (98)
T d2plta_ 4 VKLGADSGALEFVP-KTLTIKSGETVNF 30 (98)
T ss_dssp EEESCTTCCSSEES-SEEEECTTCEEEE
T ss_pred EEEeeCCCceEEeC-CEEEECCCCEEEE
Confidence 33445677889999 5567999997664
No 7
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.10 E-value=46 Score=20.34 Aligned_cols=25 Identities=24% Similarity=0.763 Sum_probs=19.0
Q ss_pred cCCCCCCCCeeeeCCcceeeecCCcc
Q 026374 155 CSKCSGNSNFVCLNNQDCAIRSTSCK 180 (239)
Q Consensus 155 C~~C~g~~~~~Cl~~q~CA~~~s~C~ 180 (239)
+..|.+...|.|.++ .|-.....|.
T Consensus 3 ~~~C~~~~~f~C~~g-~CI~~~~~CD 27 (44)
T d1xfea2 3 VTLCEGPNKFKCHSG-ECITLDKVCN 27 (44)
T ss_dssp CSSCCSTTEEECTTS-CEEESTTTTC
T ss_pred cCcCCCCCeEECCCC-CeEchhhcCC
Confidence 456777778999866 5988888883
No 8
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=11.36 E-value=53 Score=23.78 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=21.2
Q ss_pred cEEEEEeeecCCCcccchHHHh-hhcc
Q 026374 191 GIQLAFSGTDKHLSVLNSWYEV-ENLR 216 (239)
Q Consensus 191 ~I~laFsGTDk~~~vl~S~yqv-s~l~ 216 (239)
++.++|.|-=+|++|.+||-++ ++|.
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g 29 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFR 29 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcC
Confidence 5789999955789999999987 5554
No 9
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}
Probab=10.60 E-value=35 Score=23.86 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.5
Q ss_pred ccccceeeccceEEeeCcceE
Q 026374 111 AGRKYAARSLPAFVANSTYTV 131 (239)
Q Consensus 111 ag~k~aarS~P~~va~~~~~v 131 (239)
.++++.++++|.++-|+.+.+
T Consensus 139 ~~~~~gi~gTPt~~InGk~~v 159 (181)
T d1beda_ 139 QFQDSGLTGVPAVVVNNRYLV 159 (181)
T ss_dssp HHHHHTCCSSSEEEETTTEEE
T ss_pred HHHHhCCccccEEEECCEEee
Confidence 356778899999999887644
No 10
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}
Probab=10.20 E-value=39 Score=25.79 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=17.2
Q ss_pred cccceeeccceEEeeCcceEE
Q 026374 112 GRKYAARSLPAFVANSTYTVT 132 (239)
Q Consensus 112 g~k~aarS~P~~va~~~~~v~ 132 (239)
++++.+++.|.||-|+.|.|.
T Consensus 43 a~~~gi~GtPtfiVnGky~v~ 63 (195)
T d1un2a_ 43 AADVQLRGVPAMFVNGKYQLN 63 (195)
T ss_dssp HHHTTCCSSSEEEETTTEEEC
T ss_pred HHHhCCCcCCEEEECCeeeec
Confidence 467788999999999888764
Done!