Query 026375
Match_columns 239
No_of_seqs 172 out of 1321
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:13:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3090 Prohibitin-like protei 100.0 8.9E-43 1.9E-47 276.0 20.9 234 2-235 51-285 (290)
2 cd03407 Band_7_4 A subgroup of 100.0 2.3E-41 5E-46 286.4 25.9 219 1-224 7-251 (262)
3 PRK11029 FtsH protease regulat 100.0 3E-41 6.4E-46 291.8 25.1 228 1-233 31-329 (334)
4 TIGR01932 hflC HflC protein. H 100.0 3E-41 6.5E-46 292.2 24.5 225 1-230 31-316 (317)
5 TIGR01933 hflK HflK protein. H 100.0 1.4E-39 3.1E-44 275.5 25.7 224 1-231 12-259 (261)
6 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.4E-39 3.1E-44 272.6 24.2 204 1-206 12-240 (242)
7 cd03401 Band_7_prohibitin Band 100.0 1.1E-39 2.3E-44 265.2 21.3 180 2-181 14-195 (196)
8 PRK10930 FtsH protease regulat 100.0 6.1E-37 1.3E-41 271.7 25.7 222 1-231 108-357 (419)
9 cd03403 Band_7_stomatin_like B 100.0 2.3E-36 5E-41 248.9 23.7 201 2-223 10-215 (215)
10 KOG3083 Prohibitin [Posttransl 100.0 8.2E-37 1.8E-41 241.8 15.2 225 5-229 44-270 (271)
11 cd03404 Band_7_HflK Band_7_Hfl 100.0 2.5E-34 5.4E-39 244.1 23.6 203 1-207 26-265 (266)
12 cd03406 Band_7_3 A subgroup of 100.0 5.7E-34 1.2E-38 241.0 21.6 183 1-184 16-209 (280)
13 COG0330 HflC Membrane protease 100.0 8E-31 1.7E-35 225.4 22.6 213 1-223 32-277 (291)
14 KOG2621 Prohibitins and stomat 100.0 1.9E-31 4.1E-36 218.6 15.8 203 2-225 67-275 (288)
15 KOG2620 Prohibitins and stomat 100.0 5.4E-32 1.2E-36 219.4 9.8 176 1-181 20-197 (301)
16 cd03402 Band_7_2 A subgroup of 100.0 3E-29 6.6E-34 206.3 17.7 148 1-153 13-169 (219)
17 PF01145 Band_7: SPFH domain / 100.0 5.9E-29 1.3E-33 198.4 11.3 152 2-155 12-168 (179)
18 smart00244 PHB prohibitin homo 99.9 5.9E-27 1.3E-31 183.7 14.2 143 2-147 15-159 (160)
19 cd03400 Band_7_1 A subgroup of 99.9 9.1E-23 2E-27 153.9 13.4 120 28-147 3-123 (124)
20 KOG2962 Prohibitin-related mem 99.9 1.8E-19 3.9E-24 144.3 19.5 177 3-180 36-223 (322)
21 cd03399 Band_7_flotillin Band_ 99.8 4.1E-19 9E-24 134.7 11.3 118 28-145 2-125 (128)
22 cd03408 Band_7_5 A subgroup of 99.8 1.6E-18 3.4E-23 141.8 12.7 143 2-146 28-205 (207)
23 KOG2668 Flotillins [Intracellu 99.7 6.9E-16 1.5E-20 130.3 22.5 140 3-144 15-164 (428)
24 COG2268 Uncharacterized protei 99.7 1.9E-15 4.1E-20 136.4 16.7 146 5-150 58-217 (548)
25 cd02106 Band_7 The band 7 doma 99.7 9.4E-16 2E-20 113.9 11.7 106 40-147 15-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.1 3.8E-09 8.3E-14 86.5 13.7 142 4-145 30-204 (211)
27 PTZ00491 major vault protein; 98.3 4.3E-05 9.4E-10 72.8 17.2 132 9-144 485-649 (850)
28 COG4260 Membrane protease subu 98.3 1.8E-05 3.9E-10 66.2 11.5 128 17-146 88-232 (345)
29 PF12127 YdfA_immunity: SigmaW 97.8 0.00035 7.6E-09 58.3 11.7 108 28-144 120-229 (316)
30 PRK13665 hypothetical protein; 97.5 0.0017 3.7E-08 54.1 10.9 108 28-144 125-234 (316)
31 COG1580 FliL Flagellar basal b 96.4 0.085 1.8E-06 41.2 11.1 80 46-135 76-157 (159)
32 PF11978 MVP_shoulder: Shoulde 95.1 0.11 2.5E-06 38.0 6.7 97 41-137 11-117 (118)
33 COG4864 Uncharacterized protei 93.7 0.72 1.6E-05 37.8 9.0 94 42-144 139-233 (328)
34 cd03405 Band_7_HflC Band_7_Hfl 93.3 0.7 1.5E-05 38.4 8.9 79 111-190 121-201 (242)
35 PRK12785 fliL flagellar basal 93.2 2.5 5.5E-05 33.2 11.5 52 81-134 110-163 (166)
36 PF03748 FliL: Flagellar basal 92.5 2.7 5.7E-05 29.6 11.7 52 81-134 43-96 (99)
37 PRK07718 fliL flagellar basal 92.5 1.8 4E-05 33.1 9.5 77 45-134 61-139 (142)
38 cd03404 Band_7_HflK Band_7_Hfl 92.4 1.4 3E-05 37.3 9.5 84 128-211 161-246 (266)
39 PRK11029 FtsH protease regulat 91.1 2 4.4E-05 37.8 9.3 63 128-190 202-266 (334)
40 PRK08455 fliL flagellar basal 91.1 5.8 0.00013 31.7 11.2 52 81-134 126-179 (182)
41 PRK05697 flagellar basal body- 90.3 6.7 0.00014 29.9 11.6 53 82-134 78-134 (137)
42 PRK06654 fliL flagellar basal 90.2 5.7 0.00012 31.7 10.2 81 43-135 95-177 (181)
43 PRK07021 fliL flagellar basal 89.8 8.2 0.00018 30.1 11.9 54 81-134 102-159 (162)
44 TIGR01932 hflC HflC protein. H 89.6 3.2 6.8E-05 36.2 9.3 38 153-190 218-256 (317)
45 cd03407 Band_7_4 A subgroup of 86.9 5.6 0.00012 33.6 8.9 65 127-191 127-193 (262)
46 PLN03086 PRLI-interacting fact 83.7 1.5 3.1E-05 41.3 4.1 33 186-223 67-99 (567)
47 PRK05696 fliL flagellar basal 81.3 24 0.00053 27.7 10.0 54 81-134 110-167 (170)
48 cd03403 Band_7_stomatin_like B 81.2 5.4 0.00012 32.3 6.3 75 107-189 117-193 (215)
49 TIGR01933 hflK HflK protein. H 79.3 16 0.00035 30.6 8.8 62 128-189 134-197 (261)
50 COG2268 Uncharacterized protei 75.9 22 0.00047 33.4 9.0 48 163-210 421-472 (548)
51 PRK04057 30S ribosomal protein 75.2 24 0.00053 28.7 8.2 82 39-131 100-183 (203)
52 PRK10930 FtsH protease regulat 70.4 17 0.00037 33.1 6.9 79 111-190 212-294 (419)
53 KOG0742 AAA+-type ATPase [Post 65.8 20 0.00044 32.7 6.2 27 154-180 202-228 (630)
54 PTZ00399 cysteinyl-tRNA-synthe 65.4 93 0.002 30.1 11.1 40 112-151 520-564 (651)
55 PRK01558 V-type ATP synthase s 64.1 56 0.0012 26.3 8.2 6 217-222 122-127 (198)
56 PF01015 Ribosomal_S3Ae: Ribos 56.9 53 0.0011 26.6 6.8 82 39-134 106-187 (194)
57 PRK06568 F0F1 ATP synthase sub 52.6 1.1E+02 0.0023 23.8 10.2 6 97-102 29-34 (154)
58 PRK02292 V-type ATP synthase s 50.1 86 0.0019 24.8 7.0 13 164-176 34-46 (188)
59 COG0330 HflC Membrane protease 49.6 74 0.0016 27.0 7.0 29 161-189 182-210 (291)
60 PRK01005 V-type ATP synthase s 44.6 1.7E+02 0.0038 23.8 8.0 15 191-205 106-120 (207)
61 PRK14474 F0F1 ATP synthase sub 42.1 2E+02 0.0043 24.2 8.2 18 96-113 29-47 (250)
62 TIGR03321 alt_F1F0_F0_B altern 40.8 2.1E+02 0.0046 23.8 8.2 18 96-113 29-47 (246)
63 PRK13460 F0F1 ATP synthase sub 39.4 1.8E+02 0.004 22.7 9.7 16 96-111 40-56 (173)
64 PRK15322 invasion protein OrgB 38.3 1.3E+02 0.0028 24.6 6.1 8 216-223 113-120 (210)
65 TIGR01147 V_ATP_synt_G vacuola 37.2 1.3E+02 0.0029 22.0 5.6 31 161-191 33-65 (113)
66 PRK02292 V-type ATP synthase s 36.9 71 0.0015 25.3 4.6 28 161-188 20-47 (188)
67 cd03401 Band_7_prohibitin Band 36.2 1.1E+02 0.0023 24.1 5.6 20 169-188 172-191 (196)
68 PRK14475 F0F1 ATP synthase sub 33.0 2.3E+02 0.005 21.9 8.3 17 97-113 35-52 (167)
69 COG1890 RPS1A Ribosomal protei 32.8 2.8E+02 0.006 22.8 9.7 85 36-131 105-191 (214)
70 KOG2620 Prohibitins and stomat 31.8 1E+02 0.0022 26.2 4.8 139 80-223 103-274 (301)
71 PRK12613 galactose-6-phosphate 31.7 43 0.00094 25.6 2.4 30 109-138 12-41 (141)
72 PF08621 RPAP1_N: RPAP1-like, 29.2 99 0.0021 19.0 3.3 33 88-120 8-40 (49)
73 PRK06231 F0F1 ATP synthase sub 26.9 3.4E+02 0.0074 21.9 9.7 9 96-104 72-80 (205)
74 CHL00019 atpF ATP synthase CF0 26.8 3.2E+02 0.0069 21.5 9.7 19 95-113 47-66 (184)
75 PRK14472 F0F1 ATP synthase sub 26.5 3.1E+02 0.0068 21.4 9.7 16 96-111 42-58 (175)
76 PF07024 ImpE: ImpE protein; 26.4 2E+02 0.0043 21.5 5.1 58 2-60 13-75 (123)
77 PRK08475 F0F1 ATP synthase sub 24.2 3.5E+02 0.0075 21.1 9.7 16 96-111 46-62 (167)
78 PRK09173 F0F1 ATP synthase sub 23.4 3.4E+02 0.0074 20.7 9.8 8 97-104 27-34 (159)
79 PF11740 KfrA_N: Plasmid repli 23.2 2.9E+02 0.0062 19.8 10.7 46 86-145 23-68 (120)
80 PRK09174 F0F1 ATP synthase sub 23.1 4.1E+02 0.0089 21.5 9.7 18 96-113 77-95 (204)
81 PRK01194 V-type ATP synthase s 23.0 1.5E+02 0.0033 23.5 4.3 27 162-188 10-36 (185)
82 TIGR01120 rpiB ribose 5-phosph 22.9 81 0.0017 24.2 2.5 30 109-138 11-43 (143)
83 KOG2007 Cysteinyl-tRNA synthet 22.9 5.9E+02 0.013 24.1 8.3 22 85-106 477-498 (586)
84 PRK13428 F0F1 ATP synthase sub 22.8 6E+02 0.013 23.3 9.9 17 97-113 26-43 (445)
85 cd03406 Band_7_3 A subgroup of 22.5 4.9E+02 0.011 22.3 11.9 120 61-188 76-209 (280)
86 PF02502 LacAB_rpiB: Ribose/Ga 21.5 88 0.0019 23.8 2.5 27 109-135 11-37 (140)
87 PRK13453 F0F1 ATP synthase sub 20.5 4.2E+02 0.0091 20.7 9.7 17 96-112 42-59 (173)
88 PRK07353 F0F1 ATP synthase sub 20.3 3.7E+02 0.0079 19.9 7.4 8 97-104 30-37 (140)
No 1
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-43 Score=276.00 Aligned_cols=234 Identities=79% Similarity=1.134 Sum_probs=226.4
Q ss_pred CcCCCC-ccccCCcceEEcccccceEEEEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccccc
Q 026375 2 KNLDLF-ACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVL 80 (239)
Q Consensus 2 ~rfG~~-~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l 80 (239)
-|+|-+ .++++.|+||.+||+++...||+|.++..+.....|+|-+.|++...|.-|++.+..+.+|+++|.+|.+..|
T Consensus 51 nRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVL 130 (290)
T KOG3090|consen 51 NRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVL 130 (290)
T ss_pred eccccchhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEEeeeEEecCCChhhhHHHHHHhccCcchhhh
Confidence 366665 5789999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026375 81 PSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYI 160 (239)
Q Consensus 81 ~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~~ 160 (239)
.+++.+.++.++++|+..++++.|++.+..+++.|-++..++.|.+++|.|+++.|.+++..++|+||+|+|+++|+++-
T Consensus 131 PSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~ 210 (290)
T KOG3090|consen 131 PSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFI 210 (290)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCcccccccccccc
Q 026375 161 VEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 235 (239)
Q Consensus 161 ~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~~~~~~~~~~~~~ 235 (239)
++.|+.+++..+++|||||++.+++++|+.++|.++.+|++|+-+++|+.+++++|++||++++.++|+.++.++
T Consensus 211 VekA~qek~~~ivrAqGEaksAqliGeAi~nn~~fi~Lrki~aAr~IA~tia~S~NkvyL~~~~LlLn~q~~~~~ 285 (290)
T KOG3090|consen 211 VEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNNPAFITLRKIEAAREIAQTIASSANKVYLSSDDLLLNLQDMDLD 285 (290)
T ss_pred hHHHHHhhhhhhhhhccchHHHHHHHHHHhCCccceeehhHHHHHHHHHHHhcCCCeEEecccceeeeehhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988876
No 2
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=2.3e-41 Score=286.40 Aligned_cols=219 Identities=17% Similarity=0.263 Sum_probs=188.1
Q ss_pred CCcCCCCccccCCcceEEcccccce-EEEEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375 1 MKNLDLFACVYPEGTHLMVPWFERP-VIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV 79 (239)
Q Consensus 1 ~~rfG~~~~~~~pG~~~~~P~~~~v-~~v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~ 79 (239)
++|||++.++++||+||++||++++ ..+|++.++++++.++.|+||+.|+++++|+|||.+..+..+|.+++ .+...
T Consensus 7 v~rfGk~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~--~~~~~ 84 (262)
T cd03407 7 IERFGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG--NPEEQ 84 (262)
T ss_pred EeecCcccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC--CHHHH
Confidence 5799999999999999999999998 48999999999888889999999999999999997766556666554 34568
Q ss_pred cchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHH--
Q 026375 80 LPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERA-- 157 (239)
Q Consensus 80 l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~-- 157 (239)
|.+.+++++|+++|+|++++++++|++|++.+.+.+++.+++|||.|++|.|++++||+++.++|++++.|+++.++.
T Consensus 85 l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~ 164 (262)
T cd03407 85 IQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVH 164 (262)
T ss_pred HHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888888875533
Q ss_pred --H----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-------------ChhhH----HHHHHHHHHHHHHHhcCC
Q 026375 158 --K----YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIAN-------------NPAFI----TLRKIEAAREIAQTIAHS 214 (239)
Q Consensus 158 --~----~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~-------------~p~~~----~~~~le~~~~~a~~~~~~ 214 (239)
+ ..+..|++++++.+++|+|+|++..++++++.. .|+.. ..+|+|++++++. ++
T Consensus 165 ~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~---~~ 241 (262)
T cd03407 165 KAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR---SS 241 (262)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh---CC
Confidence 1 356788999999999999999988888777521 23332 3489999999875 55
Q ss_pred CCEEEEcCCc
Q 026375 215 ANKVFLNSDD 224 (239)
Q Consensus 215 ~~~i~l~~~~ 224 (239)
++++++|++.
T Consensus 242 ~kviv~p~~~ 251 (262)
T cd03407 242 STVVFRPHGP 251 (262)
T ss_pred CCEEEecCCC
Confidence 6778898763
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=3e-41 Score=291.83 Aligned_cols=228 Identities=20% Similarity=0.330 Sum_probs=195.3
Q ss_pred CCcCCCCcc-------ccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhC
Q 026375 1 MKNLDLFAC-------VYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALG 72 (239)
Q Consensus 1 ~~rfG~~~~-------~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~ 72 (239)
++|||++.+ +++|||||++||++++..||++.+.++++.+ +.|+|+..|.||++|+|+| .++..+|..++
T Consensus 31 V~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI--~Dp~~~~~~~~ 108 (334)
T PRK11029 31 VLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRI--SDFSRYYLATG 108 (334)
T ss_pred EEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEE--CCHHHHHHHhc
Confidence 368999976 4899999999999999999999999998865 9999999999999999998 45666665554
Q ss_pred -c--cccccccchHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHH------------------------------
Q 026375 73 -E--NYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTER------------------------------ 118 (239)
Q Consensus 73 -~--~~~~~~l~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~------------------------------ 118 (239)
. ......|.+.+++++|+++|+++++++++ +|++|..++++.+++.
T Consensus 109 ~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (334)
T PRK11029 109 GGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKG 188 (334)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhccccccc
Confidence 2 23457789999999999999999999996 7999999999999964
Q ss_pred ---------HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHH----H---------------HHHHHHHHHHHH
Q 026375 119 ---------AANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERA----K---------------YIVEKAEQDKRS 170 (239)
Q Consensus 119 ---------l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~----~---------------~~~~~Aeaea~a 170 (239)
+.+|||+|.+|.|+++.||+++.++|.+++.|++++..+ + .....|++++++
T Consensus 189 ~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a 268 (334)
T PRK11029 189 KVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQG 268 (334)
T ss_pred ccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 468999999999999999999999999888888764411 0 123458899999
Q ss_pred HHHHHhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCCcccccccccc
Q 026375 171 AIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMK 233 (239)
Q Consensus 171 ~~~~Aegea~a~~~~a~a~~~~p~~~~~-~~le~~~~~a~~~~~~~~~i~l~~~~~~~~~~~~~ 233 (239)
.+++|+|+|+++++++++|+++|+++.+ ++||+++++.+ ++++++|||+++.+|.+.+.|
T Consensus 269 ~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~~~~---~~~~~~vl~~~~~~~~~l~~~ 329 (334)
T PRK11029 269 RIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSFS---GNQDVMVLSPDSDFFRYMKTP 329 (334)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---CCCcEEEECCChHHHHHhhcc
Confidence 9999999999999999999999999997 99999999653 555789999999888877533
No 4
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=3e-41 Score=292.24 Aligned_cols=225 Identities=17% Similarity=0.304 Sum_probs=192.4
Q ss_pred CCcCCCCcccc-------CCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhC
Q 026375 1 MKNLDLFACVY-------PEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALG 72 (239)
Q Consensus 1 ~~rfG~~~~~~-------~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~ 72 (239)
++|||++.++. +||+||++||++++..+|++.+.++.+.. +.|+|++++.|+++|+|||. ++..+|..+|
T Consensus 31 v~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~--d~~~~~~~~~ 108 (317)
T TIGR01932 31 ITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIE--DFKKYYLSTG 108 (317)
T ss_pred EEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEEC--CHHHHHHHhc
Confidence 36899987654 79999999999999999999999998764 99999999999999999984 5777887777
Q ss_pred ---ccccccccchHHHHHHHHHHhhcCHhHHHH-HHHHH-----------------------------HHHHHHHHHHHH
Q 026375 73 ---ENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETV-----------------------------SREIRKILTERA 119 (239)
Q Consensus 73 ---~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~-~R~~i-----------------------------~~~i~~~l~~~l 119 (239)
.++.+..|.+.+++++|+++|+|+++|+++ +|++| +..+.+.+.+.+
T Consensus 109 ~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~i~~~~~~~~ 188 (317)
T TIGR01932 109 GGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIANSQL 188 (317)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhhhHHHHHHHHHHHHH
Confidence 335678899999999999999999999995 45555 567888888899
Q ss_pred hcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhHHH
Q 026375 120 ANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERA-------------------KYIVEKAEQDKRSAIIRAQGEAT 180 (239)
Q Consensus 120 ~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~-------------------~~~~~~Aeaea~a~~~~Aegea~ 180 (239)
.+|||+|++|.|++++||+++.++|.+++.|+++++.+ +.....|+|++++.+++|+|||+
T Consensus 189 ~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~ 268 (317)
T TIGR01932 189 KDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGDAE 268 (317)
T ss_pred hcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999998888877653111 11345678888899999999999
Q ss_pred HHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCCccccccc
Q 026375 181 SAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSANKVFLNSDDLLLNLQ 230 (239)
Q Consensus 181 a~~~~a~a~~~~p~~~~~-~~le~~~~~a~~~~~~~~~i~l~~~~~~~~~~ 230 (239)
++++++++|+++|+++++ ++||+++++.+ ++++++++|+|+.||.+.
T Consensus 269 a~~~~~~a~~~~p~~~~~~~~le~~~~~~~---~~~~~~vl~~~~~~~~~~ 316 (317)
T TIGR01932 269 AAKIYSDAYGKDPEFYSFWRSLEAYEKSFK---DNQDEKVLSTDSEFFQYM 316 (317)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhC---CCCCEEEECCCcHHHHhh
Confidence 999999999999999986 99999999653 566689999999998764
No 5
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=1.4e-39 Score=275.52 Aligned_cols=224 Identities=17% Similarity=0.213 Sum_probs=189.5
Q ss_pred CCcCCCCccccCCcceEEcccccceEEEEeeeeeEeeee-cccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375 1 MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV 79 (239)
Q Consensus 1 ~~rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~ 79 (239)
++|||++.++++||+||++||+++++.+|++.+....+. .+.|+||..|.+++++.|||. ++..++ |+.+.++..
T Consensus 12 v~~fGk~~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~--d~~~~~--~~~~~~~~~ 87 (261)
T TIGR01933 12 VLRFGKYHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRIT--DPYKYL--FSVENPEDS 87 (261)
T ss_pred EEEcCccccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEEC--CHHHHH--HhCCCHHHH
Confidence 468999999999999999999999999999764422222 378999999999999999985 333333 355677788
Q ss_pred cchHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHH
Q 026375 80 LPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQEAER 156 (239)
Q Consensus 80 l~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~ 156 (239)
|.+.+++++|+++|+++++++++ +|++|++.+.+.+++.++.| ||+|++|.|+++.||+++.++|++++.|+|++++
T Consensus 88 l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~ 167 (261)
T TIGR01933 88 LRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEER 167 (261)
T ss_pred HHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 89999999999999999965 9999999999999999999999988888776433
Q ss_pred HH-------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCC
Q 026375 157 AK-------------------YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSAN 216 (239)
Q Consensus 157 ~~-------------------~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~~-~~le~~~~~a~~~~~~~~ 216 (239)
.. ..+..|++++++.+++|+|+|++..+++++|+.+|+++.+ +++|+++++. ++.++
T Consensus 168 ~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le~~~~~~---~~~~~ 244 (261)
T TIGR01933 168 YINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLETMEKVL---SNTRK 244 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH---ccCCe
Confidence 21 1357788889999999999999999999999999999987 9999999865 24555
Q ss_pred EEEEcCCcccccccc
Q 026375 217 KVFLNSDDLLLNLQE 231 (239)
Q Consensus 217 ~i~l~~~~~~~~~~~ 231 (239)
++++++++.+|.+-+
T Consensus 245 ~~~~~~~~~~~~~~~ 259 (261)
T TIGR01933 245 VLLDDKKGNNLLYLP 259 (261)
T ss_pred EEEECCCCCeeeeec
Confidence 678888887776544
No 6
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.4e-39 Score=272.59 Aligned_cols=204 Identities=23% Similarity=0.329 Sum_probs=180.2
Q ss_pred CCcCCCCcc-ccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcc--cc
Q 026375 1 MKNLDLFAC-VYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGEN--YN 76 (239)
Q Consensus 1 ~~rfG~~~~-~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~--~~ 76 (239)
++|||++.+ +++||+||++||+++++.||++.+.++++.. +.|+|++++++++++.|||. ++..+|.+++.. ..
T Consensus 12 v~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~~~~~~~~~~~~~ 89 (242)
T cd03405 12 VLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRIT--DPLRFYQAVGGEERAA 89 (242)
T ss_pred EEEcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEc--CHHHHHHHhcChHHHH
Confidence 368999976 6899999999999999999999998887654 89999999999999999984 466788877732 23
Q ss_pred ccccchHHHHHHHHHHhhcCHhHHHHH-HHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHH
Q 026375 77 ERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAE 155 (239)
Q Consensus 77 ~~~l~~~v~~~lr~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae 155 (239)
+..|.+.+++++|+++|+|+++|++++ |++|++.+.+.|++.+.+|||+|.+|.|++|.||+++.++|+.++.|+++..
T Consensus 90 ~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~ 169 (242)
T cd03405 90 ETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERI 169 (242)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999976 9999999999999999999999999999999999999999987777766432
Q ss_pred HH-------------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHH
Q 026375 156 RA-------------------KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAARE 206 (239)
Q Consensus 156 ~~-------------------~~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~~-~~le~~~~ 206 (239)
.+ +..+..|++++++.+++|+|+|+++++++++++++|+++.+ ++||+++.
T Consensus 170 a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~~~~~l~~~~~ 240 (242)
T cd03405 170 AAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLEAYRN 240 (242)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11 12467899999999999999999999999999999999997 99999975
No 7
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=1.1e-39 Score=265.17 Aligned_cols=180 Identities=66% Similarity=0.958 Sum_probs=171.2
Q ss_pred CcCCCCcc--ccCCcceEEcccccceEEEEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375 2 KNLDLFAC--VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV 79 (239)
Q Consensus 2 ~rfG~~~~--~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~ 79 (239)
.|||+... +++||+||++||+++++.+|++.+++++...+.|+|++.|++++++.|++++++++.+|..+|.++.+..
T Consensus 14 ~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~~~~~~~~~~~~~~~ 93 (196)
T cd03401 14 FNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLPRIYQNLGEDYDERV 93 (196)
T ss_pred EEecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHHHHHHHhCcchHhhh
Confidence 47887643 8999999999999999999999999988877889999999999999999988888899999998777888
Q ss_pred cchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHH
Q 026375 80 LPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKY 159 (239)
Q Consensus 80 l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~ 159 (239)
|.+.+++++|+++|+|+++|++++|++|++.+.+.+++.+.+|||.|++|.|++|++|+++.++|+++++|+|+++++++
T Consensus 94 i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~~~a~~ 173 (196)
T cd03401 94 LPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKF 173 (196)
T ss_pred hcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 026375 160 IVEKAEQDKRSAIIRAQGEATS 181 (239)
Q Consensus 160 ~~~~Aeaea~a~~~~Aegea~a 181 (239)
++..|+++|++++++|+|||+|
T Consensus 174 ~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 174 VVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHhhhhhhc
Confidence 9999999999999999999987
No 8
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=6.1e-37 Score=271.72 Aligned_cols=222 Identities=19% Similarity=0.299 Sum_probs=183.3
Q ss_pred CCcCCCCccccCCcceEEcccccceEEEEeeeeeEeee-ecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375 1 MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVE-STSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV 79 (239)
Q Consensus 1 ~~rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~-~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~ 79 (239)
++|||++.++++||+||++||+++|..+|++.+..... ..++|+|+..|.|+++|+|||. ++..++. ....++..
T Consensus 108 V~rFGk~~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~--Dp~~~lf--~v~~~~~~ 183 (419)
T PRK10930 108 VTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVT--DPEKYLF--SVTSPDDS 183 (419)
T ss_pred EEECCcCcceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEEC--CHHHHHH--hccCHHHH
Confidence 47999999999999999999999999999887643322 3489999999999999999984 4444443 45677888
Q ss_pred cchHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHH
Q 026375 80 LPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQEAER 156 (239)
Q Consensus 80 l~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~ 156 (239)
|.+.+++++|+++|+++++++++ +|++|..++.+.+++.+++| ||+|.+|.|+++.||+++.+++++.+.|+++.++
T Consensus 184 L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~ 263 (419)
T PRK10930 184 LRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQ 263 (419)
T ss_pred HHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 69999999999999999987 9999999999999999999999876666654221
Q ss_pred H-------------------HHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCC
Q 026375 157 A-------------------KYIVEKAEQDKRSAIIRAQGEATS-AQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSA 215 (239)
Q Consensus 157 ~-------------------~~~~~~Aeaea~a~~~~Aegea~a-~~~~a~a~~~~p~~~~~-~~le~~~~~a~~~~~~~ 215 (239)
. +..+..|+|++++.+++|+|||++ .+++ .+|.++|++.+. .|||+++++ | ++.
T Consensus 264 ~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~-~~Y~kaP~vtr~RlYletme~v---l-~~~ 338 (419)
T PRK10930 264 YIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLL-PEYKAAPEITRERLYIETMEKV---L-GHT 338 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHhhCHHHHHHHHHHHHHHHH---H-ccC
Confidence 1 123566899999999999999977 5555 589999999986 999999995 4 456
Q ss_pred CEEEEcCCc---ccccccc
Q 026375 216 NKVFLNSDD---LLLNLQE 231 (239)
Q Consensus 216 ~~i~l~~~~---~~~~~~~ 231 (239)
++++++.++ .+|+|++
T Consensus 339 ~kvivd~~~~~~~~lpl~~ 357 (419)
T PRK10930 339 RKVLVNDKGGNLMVLPLDQ 357 (419)
T ss_pred CEEEEeCCCCeeEEeechH
Confidence 778887652 3555554
No 9
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=2.3e-36 Score=248.91 Aligned_cols=201 Identities=25% Similarity=0.409 Sum_probs=173.9
Q ss_pred CcCCCCccccCCcceEEcccccce-EEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375 2 KNLDLFACVYPEGTHLMVPWFERP-VIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV 79 (239)
Q Consensus 2 ~rfG~~~~~~~pG~~~~~P~~~~v-~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~ 79 (239)
.|||++.++++||+||++||++++ +.||++.++++++.. +.|+|++++.+++++.|||. ++..++. ..+.++..
T Consensus 10 ~~~G~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~~~~--~~~~~~~~ 85 (215)
T cd03403 10 ERLGKYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVV--DPVKAVY--GVEDYRYA 85 (215)
T ss_pred EEcCcCccccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEe--cHHHHHh--cCCCHHHH
Confidence 589999999999999999999999 999999999999765 89999999999999999983 3334443 33556678
Q ss_pred cchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHH
Q 026375 80 LPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKY 159 (239)
Q Consensus 80 l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~ 159 (239)
|.+.+++++|+++++++++|++++|++|++.+.+.|++.+.+|||+|++|.|+++++|+++.++|++++.
T Consensus 86 l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~---------- 155 (215)
T cd03403 86 ISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAE---------- 155 (215)
T ss_pred HHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh---cChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 026375 160 IVEKAEQDKRSAIIRAQGEATSAQLIGQAIA---NNPAFITLRKIEAAREIAQTIAHSANKVFLNSD 223 (239)
Q Consensus 160 ~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~---~~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~ 223 (239)
|+.++++.+++|+|++++.+++++|.+ .+|.++.++++|+++.+++ ..+.+++++++
T Consensus 156 ----A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~ 215 (215)
T cd03403 156 ----AEREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAK---EAASTVVFPAP 215 (215)
T ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---ccCCeEEeeCC
Confidence 445566778888888888888888864 2689999999999999997 45566666653
No 10
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-37 Score=241.84 Aligned_cols=225 Identities=53% Similarity=0.857 Sum_probs=212.7
Q ss_pred CCCccccCCcceEEcccccceEEEEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHH
Q 026375 5 DLFACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSII 84 (239)
Q Consensus 5 G~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v 84 (239)
|....+++.|.||.+||.++.+.||.+.++..++....|||-+.|++...+.|+...+.+|.+|.++|.+|.+..|.++.
T Consensus 44 gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sqLP~If~~~G~dyDErVLpsI~ 123 (271)
T KOG3083|consen 44 GVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQLPCIFTSIGEDYDERVLPSIT 123 (271)
T ss_pred chhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccceEEEEecccccccchHHHhhcccccccccccch
Confidence 33456889999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026375 85 HETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKA 164 (239)
Q Consensus 85 ~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~~~~~A 164 (239)
...+++++++++..|+++.|+.+++.+.+.|.++...+|+.+++|.|+++.+..++.+++++||+|+||+||+++.++.|
T Consensus 124 ~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKA 203 (271)
T KOG3083|consen 124 TEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKA 203 (271)
T ss_pred HHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC-cccccc
Q 026375 165 EQDKRSAIIRAQGEATSAQLIGQAIAN-NPAFITLRKIEAAREIAQTIAHSANKVFLNSD-DLLLNL 229 (239)
Q Consensus 165 eaea~a~~~~Aegea~a~~~~a~a~~~-~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~-~~~~~~ 229 (239)
++++.+.+|.||||++|.+++++++.. ...+++++.+|+-++++..|+++.|+.|+|++ +.++++
T Consensus 204 eQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrlEAa~dia~~Ls~s~nv~YLp~g~s~l~~l 270 (271)
T KOG3083|consen 204 EQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRLEAAEDIAYQLSRSRNVTYLPAGQSMLLQL 270 (271)
T ss_pred hhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhhhhHHHHHHHHhcCCCceeccCCcceeccC
Confidence 999999999999999999999999864 55689999999999999999999999999986 456554
No 11
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=2.5e-34 Score=244.14 Aligned_cols=203 Identities=21% Similarity=0.235 Sum_probs=165.4
Q ss_pred CCcCCCCccccCCcceEEcccccceEEE-Eeeee----------eEe-e--eecccccCceeEEEEEEEEEeeCCCCHHH
Q 026375 1 MKNLDLFACVYPEGTHLMVPWFERPVIY-DVRAR----------PHL-V--ESTSGSRDLQMVKIGLRVLTRPVADKLPT 66 (239)
Q Consensus 1 ~~rfG~~~~~~~pG~~~~~P~~~~v~~v-~~~~~----------~~~-~--~~~~~T~D~~~v~v~~~v~y~i~~~~~~~ 66 (239)
++|||++.++++||+||++||++++..+ +++.+ ... . +..+.|+||+.|.+++++.|||.+ +..
T Consensus 26 V~~fGk~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d--~~~ 103 (266)
T cd03404 26 VLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFAVQYRISD--PYD 103 (266)
T ss_pred eEEcCccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEEEEEEEEECC--HHH
Confidence 4689999999999999999999887544 33211 111 1 124789999999999999999853 333
Q ss_pred HHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHH-HHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHH
Q 026375 67 VYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSA 143 (239)
Q Consensus 67 ~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~a 143 (239)
++. +...++..|.+.+++++|+++|+|+++|++++ |++|.+.+.+.+++.+..| ||+|.+|.|+++.||+++.++
T Consensus 104 ~~~--~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a 181 (266)
T cd03404 104 YLF--NVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDA 181 (266)
T ss_pred HHh--hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHH
Confidence 332 34556778999999999999999999999986 9999999999999999976 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHH-HHHHHH
Q 026375 144 IEAKQVAAQEAERAK-------------------YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFIT-LRKIEA 203 (239)
Q Consensus 144 i~~k~~A~q~ae~~~-------------------~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~-~~~le~ 203 (239)
|+++..|+|++++++ .....|++++++.+++|+|++++.++++++|+++|.++. ..|+++
T Consensus 182 ~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~~~~~~~~~~~~~ 261 (266)
T cd03404 182 FDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKKAPDVTRERLYLET 261 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 998888887644332 134567777778888888888888999999999999765 499999
Q ss_pred HHHH
Q 026375 204 AREI 207 (239)
Q Consensus 204 ~~~~ 207 (239)
+.++
T Consensus 262 ~~~~ 265 (266)
T cd03404 262 MEEV 265 (266)
T ss_pred HHHh
Confidence 8863
No 12
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=5.7e-34 Score=241.01 Aligned_cols=183 Identities=15% Similarity=0.262 Sum_probs=159.4
Q ss_pred CCcCCCC-ccccCCcceEEcccccceEEEEeeeeeEeeee-cccccCceeEEEE-EEEEEeeCCCCHHHHHHHhCccccc
Q 026375 1 MKNLDLF-ACVYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQMVKIG-LRVLTRPVADKLPTVYRALGENYNE 77 (239)
Q Consensus 1 ~~rfG~~-~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~-~~~T~D~~~v~v~-~~v~y~i~~~~~~~~~~~~~~~~~~ 77 (239)
++|||++ ..+++|||||++||++++..++++.++.+.+. .+.|+||+.|++| +.+.|++++..+...+.+|+.++..
T Consensus 16 V~RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~~~~~~~~y~~~~~~ 95 (280)
T cd03406 16 YYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYDK 95 (280)
T ss_pred EEECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHHHHHHHHHHhHhhHH
Confidence 4699998 56889999999999999999999999888753 4889999999999 5688888888777777777878889
Q ss_pred cccchHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHHHH
Q 026375 78 RVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQEA 154 (239)
Q Consensus 78 ~~l~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~a 154 (239)
..|.+.+++++|+++|+++++|+++ +|+++.+.+.+.+++.+..| ||+|.+|.|++++||+++.++++ ++.|+.+.
T Consensus 96 ~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~afe-rM~aER~k 174 (280)
T cd03406 96 TLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNYE-LMEAEKTK 174 (280)
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHHH-HHHHHHHh
Confidence 9999999999999999999999996 89999999999999999987 99999999999999999999994 55555443
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 026375 155 -----ERAKYIVEKAEQDKRSAIIRAQGEATSAQL 184 (239)
Q Consensus 155 -----e~~~~~~~~Aeaea~a~~~~Aegea~a~~~ 184 (239)
++++.....||+++.+.+++|+|+|...++
T Consensus 175 ~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~ 209 (280)
T cd03406 175 LLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKI 209 (280)
T ss_pred hhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHH
Confidence 244556788999999999999998887665
No 13
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8e-31 Score=225.36 Aligned_cols=213 Identities=25% Similarity=0.359 Sum_probs=164.5
Q ss_pred CCcCCCCccccC-CcceEEcccc----cceEEEEeeeeeEee-eec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCc
Q 026375 1 MKNLDLFACVYP-EGTHLMVPWF----ERPVIYDVRARPHLV-EST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGE 73 (239)
Q Consensus 1 ~~rfG~~~~~~~-pG~~~~~P~~----~~v~~v~~~~~~~~~-~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~ 73 (239)
+.|||++.++++ ||+||++||. .....++.+.++++. +.+ +.|+|+..|++|++|.|||.+. ..++. ..
T Consensus 32 v~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d~--~~~~~--~v 107 (291)
T COG0330 32 VLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDP--QKAVY--NV 107 (291)
T ss_pred EEEecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcCH--HHHHH--hc
Confidence 369999999998 9999999993 333677888888888 565 9999999999999999998533 33333 34
Q ss_pred cccccccchHHHHHHHHHHhhcCHhHHHHHHH-HHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHH
Q 026375 74 NYNERVLPSIIHETLKAVVAQYNASQLITQRE-TVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQ 152 (239)
Q Consensus 74 ~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~-~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q 152 (239)
+.++..|.+.+++.+|+++|+++++++++.|. .|...+.+.|++.+++|||.|.+|.|+++.||+++..++..++.|++
T Consensus 108 ~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~~a~~~~~~Aer 187 (291)
T COG0330 108 ENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAER 187 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 55888899999999999999999999999888 99999999999999999999999999999999999999986666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---------------------hcC---hhhHHHHHHHHHHHHH
Q 026375 153 EAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI---------------------ANN---PAFITLRKIEAAREIA 208 (239)
Q Consensus 153 ~ae~~~~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~---------------------~~~---p~~~~~~~le~~~~~a 208 (239)
+... .+..|++++++.+++|+|++++..++++|. ... |.+..+++++.+.+.+
T Consensus 188 ~~ra---~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 264 (291)
T COG0330 188 DKRA---EILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAALREAPAAPQALAQRYLEELLEIA 264 (291)
T ss_pred HHHH---HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcccccchhHHHHHHHHHHHHHHh
Confidence 5333 345555555555555555555555544443 333 3566679999998876
Q ss_pred HHhcCCCCE-EEEcCC
Q 026375 209 QTIAHSANK-VFLNSD 223 (239)
Q Consensus 209 ~~~~~~~~~-i~l~~~ 223 (239)
. .++++ +++|.+
T Consensus 265 ~---~~~~~~v~~p~~ 277 (291)
T COG0330 265 L---AGNSKVVVVPNS 277 (291)
T ss_pred h---CCCCeEEEecCC
Confidence 4 33444 455544
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.98 E-value=1.9e-31 Score=218.56 Aligned_cols=203 Identities=18% Similarity=0.274 Sum_probs=178.4
Q ss_pred CcCCCCcc--ccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccc
Q 026375 2 KNLDLFAC--VYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNER 78 (239)
Q Consensus 2 ~rfG~~~~--~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~ 78 (239)
-|+|++.. .-|||+.|.+||+++.+++|+|+++++++.+ +.|+|.+.+.||+.|+|||. ++..-+. +.++...
T Consensus 67 fRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~--dpi~sv~--~V~Da~~ 142 (288)
T KOG2621|consen 67 FRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS--DPIIAVN--NVGDADN 142 (288)
T ss_pred eeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEec--CHHHHHH--hccCHHH
Confidence 38899865 6799999999999999999999999999987 99999999999999999973 3332333 4566666
Q ss_pred ccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHH
Q 026375 79 VLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAK 158 (239)
Q Consensus 79 ~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~ 158 (239)
..+-..++.+|+++|+.++.|++++|+.|+.+++..|++....|||+|++|.|.||++|.+.+.++.+ ++
T Consensus 143 sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaa------eA---- 212 (288)
T KOG2621|consen 143 ATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAA------EA---- 212 (288)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhc------hh----
Confidence 67889999999999999999999999999999999999999999999999999999999999999842 11
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---hcChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCcc
Q 026375 159 YIVEKAEQDKRSAIIRAQGEATSAQLIGQAI---ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDL 225 (239)
Q Consensus 159 ~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~---~~~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~~~ 225 (239)
.|.+++.++++.||||..|.+.+++|. +.+|..++++||+++..++. ..++++++|-.-+
T Consensus 213 ----eA~reA~Akviaaege~~as~al~~aa~v~~~sp~alqLryLqtl~sia~---e~~~tivfP~p~e 275 (288)
T KOG2621|consen 213 ----EATREARAKVIAAEGEKKASEALKEAADVISESPIALQLRYLQTLNSIAA---EKNSTIVFPLPID 275 (288)
T ss_pred ----hhhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhhhhhhcchhhhc---CCCCCcccCCCHH
Confidence 277888999999999999999998874 68999999999999998885 6778899996543
No 15
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.97 E-value=5.4e-32 Score=219.36 Aligned_cols=176 Identities=16% Similarity=0.250 Sum_probs=142.2
Q ss_pred CCcCCCCccccCCcceEEcccccceEE-EEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccc
Q 026375 1 MKNLDLFACVYPEGTHLMVPWFERPVI-YDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNER 78 (239)
Q Consensus 1 ~~rfG~~~~~~~pG~~~~~P~~~~v~~-v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~ 78 (239)
+||||+|.++++||+||..|+++++.. .+++...+..+.+ ..|+||+.+.++.+++||+..+.+... .||.++++.
T Consensus 20 vER~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~dA--sYgvenp~~ 97 (301)
T KOG2620|consen 20 VERFGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYADDA--SYGVENPEY 97 (301)
T ss_pred HHHhhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEeccccccc--ccccCCHHH
Confidence 479999999999999999999988854 3444444555544 899999999999999999854444222 248899999
Q ss_pred ccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHH
Q 026375 79 VLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAK 158 (239)
Q Consensus 79 ~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~ 158 (239)
.|.+.+++.+|+.+++++++.++..|+.|+..+.+.+++.+..||++|....|+||.||+.+..+|+ .+.+.++..++
T Consensus 98 aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~-~q~~AeR~krA- 175 (301)
T KOG2620|consen 98 AIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMN-MQNEAERMKRA- 175 (301)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHH-HHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 44443333333
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Q 026375 159 YIVEKAEQDKRSAIIRAQGEATS 181 (239)
Q Consensus 159 ~~~~~Aeaea~a~~~~Aegea~a 181 (239)
.+..+|+++.+.+.+|||++++
T Consensus 176 -ailesEger~~~InrAEGek~s 197 (301)
T KOG2620|consen 176 -AILESEGERIAQINRAEGEKES 197 (301)
T ss_pred -HHhhhhhhhHHhhhhhcchhhh
Confidence 2455555555555555555444
No 16
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.97 E-value=3e-29 Score=206.32 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=129.5
Q ss_pred CCcCCCCcccc-CCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccc
Q 026375 1 MKNLDLFACVY-PEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNER 78 (239)
Q Consensus 1 ~~rfG~~~~~~-~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~ 78 (239)
++|||++.++. +||+||++||++ ...+|++.++++.+.. +.|+||.++.+++.+.|||. +...++| +.+.+..
T Consensus 13 v~rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~-Dp~ka~~---~v~~~~~ 87 (219)
T cd03402 13 LVLFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVV-DTAKAVF---NVDDYEE 87 (219)
T ss_pred EEEcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEc-CHHHHHH---HcCCHHH
Confidence 46999998765 999999999985 5889999999988876 99999999999999999984 3333334 4466688
Q ss_pred ccchHHHHHHHHHHhhcCHhHHHH-------HHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHH
Q 026375 79 VLPSIIHETLKAVVAQYNASQLIT-------QRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAA 151 (239)
Q Consensus 79 ~l~~~v~~~lr~~~~~~~~~ei~~-------~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~ 151 (239)
.|.+.+++++|+++|+|+++++++ +|++|.+++.+.+++.++.|||+|.++.|+++.||+++.++|.++++|+
T Consensus 88 ~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~Ae 167 (219)
T cd03402 88 FVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQAS 167 (219)
T ss_pred HHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHHHH
Confidence 999999999999999999999985 5799999999999999999999999999999999999999998776544
Q ss_pred HH
Q 026375 152 QE 153 (239)
Q Consensus 152 q~ 153 (239)
.+
T Consensus 168 ~~ 169 (219)
T cd03402 168 AI 169 (219)
T ss_pred HH
Confidence 33
No 17
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.96 E-value=5.9e-29 Score=198.43 Aligned_cols=152 Identities=26% Similarity=0.430 Sum_probs=112.5
Q ss_pred CcCCCCccccCCcceEEcccccceEEEEeeeeeEeeee---cccccCceeEEEEEEEEEeeCCCCHHHHHHHh--Ccccc
Q 026375 2 KNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVES---TSGSRDLQMVKIGLRVLTRPVADKLPTVYRAL--GENYN 76 (239)
Q Consensus 2 ~rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~---~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~--~~~~~ 76 (239)
.+||++..+++||+||++||+++++.||++.+++++.. .+.|+|++++.+++++.|+| ++++.++.++ +.+..
T Consensus 12 ~~~G~~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~~~~~~~~~~~~~~ 89 (179)
T PF01145_consen 12 VRFGKVKDVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPPKFVQNYEGGEEDP 89 (179)
T ss_dssp --------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CCCCCCCCSS-HCHH
T ss_pred EECCeEeEEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHHHHHHhhhcchhhh
Confidence 46999999999999999999999999999999999998 69999999999999999998 5556677777 35788
Q ss_pred ccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHH
Q 026375 77 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAE 155 (239)
Q Consensus 77 ~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae 155 (239)
+..|++.+++++|+++++|++++++++|.++.+.+.+.|++.+.+|||+|.+|.|.++.+|+++.++|..++.++++++
T Consensus 90 ~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~~~~~ 168 (179)
T PF01145_consen 90 ENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAEQEAQ 168 (179)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHHHHH-
T ss_pred hhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988877776653
No 18
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.95 E-value=5.9e-27 Score=183.69 Aligned_cols=143 Identities=29% Similarity=0.475 Sum_probs=127.3
Q ss_pred CcCCCCccccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccccc
Q 026375 2 KNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVL 80 (239)
Q Consensus 2 ~rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l 80 (239)
++||++.++++||+||++||+++++.+|++.+.++.+.. +.|+|++++.+++++.|||. +....++...|.+ ...|
T Consensus 15 ~~~G~~~~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~-d~~~~~~~~~~~~--~~~l 91 (160)
T smart00244 15 ERLGRVLRVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVL-DPLKAVYRVLDAD--YAVI 91 (160)
T ss_pred EecCccccccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEc-cHHHHhhhcCCHH--HHHH
Confidence 589999989999999999999999999999999988764 89999999999999999974 3344444433332 2589
Q ss_pred chHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 026375 81 PSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAK 147 (239)
Q Consensus 81 ~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k 147 (239)
.+.+++++|+++++++++++++ +|++|++.+.+.+++.+++||++|.++.|+++++|+++.++|++|
T Consensus 92 ~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~k 159 (160)
T smart00244 92 EQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQ 159 (160)
T ss_pred HHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 9999999999999999999998 799999999999999999999999999999999999999999765
No 19
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.90 E-value=9.1e-23 Score=153.93 Aligned_cols=120 Identities=22% Similarity=0.343 Sum_probs=112.8
Q ss_pred EEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHH-HHHH
Q 026375 28 YDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRET 106 (239)
Q Consensus 28 v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~-~R~~ 106 (239)
||++.++.+.+..+.|+||+.+.+++++.|||++.++..+|.++|.++.+..|.+.+++++|+++|+|+++++++ +|++
T Consensus 3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~ 82 (124)
T cd03400 3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE 82 (124)
T ss_pred ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence 678888888777899999999999999999999888888999998777888999999999999999999999995 8999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 026375 107 VSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAK 147 (239)
Q Consensus 107 i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k 147 (239)
|++.+.+.+++.+.+|||+|.+|.|+++.||+++.++|++|
T Consensus 83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999865
No 20
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.85 E-value=1.8e-19 Score=144.25 Aligned_cols=177 Identities=16% Similarity=0.274 Sum_probs=140.9
Q ss_pred cCCCC-ccccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEE-EEEEEeeCCCCHHHHHHHhCccccccc
Q 026375 3 NLDLF-ACVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIG-LRVLTRPVADKLPTVYRALGENYNERV 79 (239)
Q Consensus 3 rfG~~-~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~-~~v~y~i~~~~~~~~~~~~~~~~~~~~ 79 (239)
|-|.. ..+.+||+|+.+||+.++..+.++.|+-++..- |.|+.|+.+.+| +-|.-.+.++-+.++..+|+.+|...+
T Consensus 36 RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d~Vydiv~NYtvdYD~~l 115 (322)
T KOG2962|consen 36 RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYDIVKNYTVDYDKTL 115 (322)
T ss_pred ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhchhHHHHHHHHcccCCcchh
Confidence 45554 457899999999999999999999999888765 999999999887 444445567777888999999999999
Q ss_pred cchHHHHHHHHHHhhcCHhHHH-HHHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHH----
Q 026375 80 LPSIIHETLKAVVAQYNASQLI-TQRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQ---- 152 (239)
Q Consensus 80 l~~~v~~~lr~~~~~~~~~ei~-~~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q---- 152 (239)
|.+.+...+...+|.+++.|+| .--++|.+.+++.|++.+..+ |+.|..|.++....|+.+...++ .+.++.
T Consensus 116 IfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E-~ME~EkTKlL 194 (322)
T KOG2962|consen 116 IFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFE-LMEAEKTKLL 194 (322)
T ss_pred hhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHH-HHHHHhhhhH
Confidence 9999999999999999999999 678999999999999999887 99999999999999999999985 322221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 026375 153 -EAERAKYIVEKAEQDKRSAIIRAQGEAT 180 (239)
Q Consensus 153 -~ae~~~~~~~~Aeaea~a~~~~Aegea~ 180 (239)
.+++++..-..||.++...+++||-.|.
T Consensus 195 iA~ekQkVvEKeAETerkkAviEAEK~Aq 223 (322)
T KOG2962|consen 195 IAAEKQKVVEKEAETERKKAVIEAEKNAQ 223 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1223333333455555555555554333
No 21
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.80 E-value=4.1e-19 Score=134.66 Aligned_cols=118 Identities=14% Similarity=0.225 Sum_probs=103.8
Q ss_pred EEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCC--HHHHHHHhC---ccccccccchHHHHHHHHHHhhcCHhHHH
Q 026375 28 YDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADK--LPTVYRALG---ENYNERVLPSIIHETLKAVVAQYNASQLI 101 (239)
Q Consensus 28 v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~--~~~~~~~~~---~~~~~~~l~~~v~~~lr~~~~~~~~~ei~ 101 (239)
+|++.+.++++.+ +.|+|++++.+++++.|||.++. ...++.+|+ .+.....+.+.+++++|+++|+|+++|++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4678888888876 89999999999999999986554 334455553 25678889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHH
Q 026375 102 TQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIE 145 (239)
Q Consensus 102 ~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~ 145 (239)
++|++|.+.+.+.++..+++|||+|.++.|++|.+|+++.+++-
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 99999999999999999999999999999999999999988763
No 22
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.79 E-value=1.6e-18 Score=141.84 Aligned_cols=143 Identities=16% Similarity=0.196 Sum_probs=119.1
Q ss_pred CcCCCCccccCCcceEEc----cccc---------------ceEEEEeeeeeEee-------eecccccCceeEEEEEEE
Q 026375 2 KNLDLFACVYPEGTHLMV----PWFE---------------RPVIYDVRARPHLV-------ESTSGSRDLQMVKIGLRV 55 (239)
Q Consensus 2 ~rfG~~~~~~~pG~~~~~----P~~~---------------~v~~v~~~~~~~~~-------~~~~~T~D~~~v~v~~~v 55 (239)
.|+|++.++++||.|+.+ |++. .++.++.+.+.... .....|+|++++.+++++
T Consensus 28 ~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~ 107 (207)
T cd03408 28 VNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGRDSEFGGVPLRAFGTY 107 (207)
T ss_pred EECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCeeeeCCccceEEEEeeEEE
Confidence 589999999988888665 4432 36677777665421 123568899999999999
Q ss_pred EEeeCCCCHHHHHHHhCcc-------ccccccchHHHHHHHHHHhhcCHhHHHHH--HHHHHHHHHHHHHHHHhcCCeEE
Q 026375 56 LTRPVADKLPTVYRALGEN-------YNERVLPSIIHETLKAVVAQYNASQLITQ--RETVSREIRKILTERAANFNIAL 126 (239)
Q Consensus 56 ~y~i~~~~~~~~~~~~~~~-------~~~~~l~~~v~~~lr~~~~~~~~~ei~~~--R~~i~~~i~~~l~~~l~~~Gi~i 126 (239)
.||| .++..++.+++.. .....|.+.+++++|++++++++++++.+ |++|++.+.+.+++.+.+||++|
T Consensus 108 ~~kI--~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l~~~~~~~Gi~i 185 (207)
T cd03408 108 SLKV--TDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFASFGLEL 185 (207)
T ss_pred EEEE--cCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHHHHHHHhcCcEE
Confidence 9997 4667888888531 35678999999999999999999999976 99999999999999999999999
Q ss_pred EEEEeecccCCHHHHHHHHH
Q 026375 127 DDVSITSLTFGKEFTSAIEA 146 (239)
Q Consensus 127 ~~v~i~~i~~p~~~~~ai~~ 146 (239)
.+|.|++|.+|+++.++|.+
T Consensus 186 ~~v~I~~i~~p~e~~~ai~~ 205 (207)
T cd03408 186 VSVYIESISYPDEVQKLIDK 205 (207)
T ss_pred EEEEEEeecCCHHHHHHHHh
Confidence 99999999999999999864
No 23
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.75 E-value=6.9e-16 Score=130.32 Aligned_cols=140 Identities=12% Similarity=0.172 Sum_probs=118.0
Q ss_pred cCCCCccccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHH-----HhC--cc
Q 026375 3 NLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYR-----ALG--EN 74 (239)
Q Consensus 3 rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~-----~~~--~~ 74 (239)
-+|.-...+-+| .|.+|| +++..||+.+.++++..+ +.|+.|+++.|....+.+|..+++..+.. ..| .+
T Consensus 15 g~g~~~~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL~~A~e~flgK~~~ 92 (428)
T KOG2668|consen 15 GGGIEDIKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELLLYACEQFLGKSSN 92 (428)
T ss_pred cccccCceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHHHHHHHHhcCCCHH
Confidence 355554445554 377788 899999999999999887 99999999999999999988787544322 123 34
Q ss_pred ccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCH--HHHHHH
Q 026375 75 YNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGK--EFTSAI 144 (239)
Q Consensus 75 ~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~--~~~~ai 144 (239)
....++...+.+..|.++++||++|||.+|.+|...+++..+..+.++||.|.+..|+|+...+ +|..++
T Consensus 93 eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssL 164 (428)
T KOG2668|consen 93 EINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSL 164 (428)
T ss_pred HHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHh
Confidence 5567777889999999999999999999999999999999999999999999999999998877 698888
No 24
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.68 E-value=1.9e-15 Score=136.35 Aligned_cols=146 Identities=15% Similarity=0.213 Sum_probs=126.5
Q ss_pred CCCccccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCC--CHHHHHHHhCcc----ccc
Q 026375 5 DLFACVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVAD--KLPTVYRALGEN----YNE 77 (239)
Q Consensus 5 G~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~--~~~~~~~~~~~~----~~~ 77 (239)
|.-.+++.+|+||++|+++...++|++..++++... +.|+||.++++++..+.+|.++ +...+..++|.. ...
T Consensus 58 g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~ 137 (548)
T COG2268 58 GGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLE 137 (548)
T ss_pred cCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEecCCHHHHHHHHHHhccccCHHHHH
Confidence 444678899999999999999999999999998854 9999999999999999888533 344555666643 556
Q ss_pred cccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCC-------HHHHHHHHHHHHH
Q 026375 78 RVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFG-------KEFTSAIEAKQVA 150 (239)
Q Consensus 78 ~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p-------~~~~~ai~~k~~A 150 (239)
..+...+.+++|.+++++|+++++++|..|.+.+.+.+...|++.|+.|+++.|.++..+ ..|.++.-.+.++
T Consensus 138 ~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~ 217 (548)
T COG2268 138 QLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIA 217 (548)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHH
Confidence 778889999999999999999999999999999999999999999999999999999999 8999999655443
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.67 E-value=9.4e-16 Score=113.89 Aligned_cols=106 Identities=22% Similarity=0.353 Sum_probs=93.3
Q ss_pred cccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHH
Q 026375 40 TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERA 119 (239)
Q Consensus 40 ~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l 119 (239)
.+.|+||+++.+++++.|+|.+.. ..++...+.+. ...|.+.+.+++|+++++++++++.++|++|++.+++.+...+
T Consensus 15 ~~~t~d~~~i~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~~ 92 (121)
T cd02106 15 EVLTKDNVPVRVDAVVQYRVVDPV-KALYNVRDPED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDL 92 (121)
T ss_pred eEEecCCCEEEEEEEEEEEEeCHH-HHHHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence 378999999999999999986544 34443333333 6789999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEEEeecccCCHHHHHHHHHH
Q 026375 120 ANFNIALDDVSITSLTFGKEFTSAIEAK 147 (239)
Q Consensus 120 ~~~Gi~i~~v~i~~i~~p~~~~~ai~~k 147 (239)
..||++|.+|.|+++.+|+++.++++++
T Consensus 93 ~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 93 DKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 9999999999999999999999999754
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.08 E-value=3.8e-09 Score=86.49 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=103.5
Q ss_pred CCCCccccCCcceEE-------------------cccccceEEEEeeeee-Eeeee----cccccCceeEEEEEEEEEee
Q 026375 4 LDLFACVYPEGTHLM-------------------VPWFERPVIYDVRARP-HLVES----TSGSRDLQMVKIGLRVLTRP 59 (239)
Q Consensus 4 fG~~~~~~~pG~~~~-------------------~P~~~~v~~v~~~~~~-~~~~~----~~~T~D~~~v~v~~~v~y~i 59 (239)
-|++..+.+||.|-. .||-..|+.++++... ..+.. .....+-..|.+.+.-.|.+
T Consensus 30 ~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~~D~~~~~v~lra~G~ys~ 109 (211)
T PF13421_consen 30 DGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPYRDPEYGPVRLRAFGTYSF 109 (211)
T ss_pred CCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeeecCCCCCcEEEEEEEEEEE
Confidence 477766789998832 3555567777777642 22221 11222332455555555555
Q ss_pred CCCCHHHHHHHhC-c------cccccccchHHHHHHHHHHhh--cCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEE
Q 026375 60 VADKLPTVYRALG-E------NYNERVLPSIIHETLKAVVAQ--YNASQLITQRETVSREIRKILTERAANFNIALDDVS 130 (239)
Q Consensus 60 ~~~~~~~~~~~~~-~------~~~~~~l~~~v~~~lr~~~~~--~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~ 130 (239)
...++..|+.++- . +.....+++.+.+.+.+.++. +++.||..+-.+|++.+++.|+..+..+|++|.++.
T Consensus 110 rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~~~l~~~~~~~Gi~l~~f~ 189 (211)
T PF13421_consen 110 RIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALKEKLNPEFERYGIELVDFG 189 (211)
T ss_pred EEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 5677888888763 1 334556777777777777775 789999999999999999999999999999999999
Q ss_pred eecccCCHHHHHHHH
Q 026375 131 ITSLTFGKEFTSAIE 145 (239)
Q Consensus 131 i~~i~~p~~~~~ai~ 145 (239)
|.+|++|+++++.|.
T Consensus 190 I~~i~~pee~~~~i~ 204 (211)
T PF13421_consen 190 IESISFPEEVQKAID 204 (211)
T ss_pred EEeecCCHHHHHHHH
Confidence 999999999999995
No 27
>PTZ00491 major vault protein; Provisional
Probab=98.32 E-value=4.3e-05 Score=72.83 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=86.6
Q ss_pred cccCCcceEEcccccceEEEEeeee---------eEe------e-e--ecccccCceeEEEEEEEEEeeC--CCCH---H
Q 026375 9 CVYPEGTHLMVPWFERPVIYDVRAR---------PHL------V-E--STSGSRDLQMVKIGLRVLTRPV--ADKL---P 65 (239)
Q Consensus 9 ~~~~pG~~~~~P~~~~v~~v~~~~~---------~~~------~-~--~~~~T~D~~~v~v~~~v~y~i~--~~~~---~ 65 (239)
.+.||-+.+.-|- +.+..+++..= .+- + . ..+-|+|...+.+.++.+|+++ +++. .
T Consensus 485 vv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~l~LsYnW~F~v~~~d~~~~~ 563 (850)
T PTZ00491 485 VVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLALQLSYNWYFDVTDGNPEDAQ 563 (850)
T ss_pred EEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEEEEEEEEEEEecCCCChhhHh
Confidence 3567777777776 55555554321 110 1 1 1256999999999999999875 3333 3
Q ss_pred HHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHH-HHHHHHHHHHH--------HHhcCCeEEEEEEeecccC
Q 026375 66 TVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET-VSREIRKILTE--------RAANFNIALDDVSITSLTF 136 (239)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~-i~~~i~~~l~~--------~l~~~Gi~i~~v~i~~i~~ 136 (239)
.+| ...++-..+-..+.|.+|..+++.+++++..+-.. |.+.+.....+ .|..-|+.|++|.|.++.|
T Consensus 564 k~F---sv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F~~N~lvit~VDvqsvEp 640 (850)
T PTZ00491 564 KCF---SVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRFPANNLVITNVDVQSVEP 640 (850)
T ss_pred hee---ccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEEccCCeEEEEEeeeeeee
Confidence 444 44333344668889999999999999999965444 44445442222 1356799999999999998
Q ss_pred CH-HHHHHH
Q 026375 137 GK-EFTSAI 144 (239)
Q Consensus 137 p~-~~~~ai 144 (239)
-+ ...+++
T Consensus 641 vD~~tr~~L 649 (850)
T PTZ00491 641 VDERTRDSL 649 (850)
T ss_pred cCHHHHHHH
Confidence 64 355555
No 28
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.25 E-value=1.8e-05 Score=66.18 Aligned_cols=128 Identities=11% Similarity=0.096 Sum_probs=94.8
Q ss_pred EEcccccceEEEEeeeee-Eeeee----cc---cccCceeEEEEEEEEEeeCCCCHHHHHHHhC-------ccccccccc
Q 026375 17 LMVPWFERPVIYDVRARP-HLVES----TS---GSRDLQMVKIGLRVLTRPVADKLPTVYRALG-------ENYNERVLP 81 (239)
Q Consensus 17 ~~~P~~~~v~~v~~~~~~-~~~~~----~~---~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~-------~~~~~~~l~ 81 (239)
|..|+-+.|+.|+++.+. +.+-. +. .-..++++....+..|+| .++..++..+. ++..++.+-
T Consensus 88 f~sp~k~eVyfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gtys~kv--tDpi~fi~~I~g~~dvy~v~di~~q~l 165 (345)
T COG4260 88 FESPFKQEVYFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGTYSIKV--TDPILFIQQIPGNRDVYTVDDINQQYL 165 (345)
T ss_pred CCCcccceEEEEecceecceecCCCCCeecccccccceeEEeecceEEEEe--cCHHHHHHhccCCCceEEHHHHHHHHH
Confidence 446777889999998765 44421 11 123455667777777776 45555776653 234455566
Q ss_pred hHHHHHHHHHHhhc--CHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHH
Q 026375 82 SIIHETLKAVVAQY--NASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 146 (239)
Q Consensus 82 ~~v~~~lr~~~~~~--~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~ 146 (239)
+.+..+|...+.++ .+..+-.+.-+|+..+.+.|.+.+..+|..|+++.|-+|++|++.++.|..
T Consensus 166 s~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~ 232 (345)
T COG4260 166 SEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINM 232 (345)
T ss_pred HHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHh
Confidence 77888888888776 344555789999999999999999999999999999999999999999963
No 29
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.85 E-value=0.00035 Score=58.35 Aligned_cols=108 Identities=10% Similarity=0.203 Sum_probs=79.6
Q ss_pred EEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHH
Q 026375 28 YDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET 106 (239)
Q Consensus 28 v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~ 106 (239)
.++.+..++-|.- ...+||+.+.+.+.|..|- +...+. |..-.+..+...-+..+..+-|.-+..+++++-+.
T Consensus 120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVRa---Ni~rLV---GGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ 193 (316)
T PF12127_consen 120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVRA---NIDRLV---GGAGEETIIARVGEGIVTTIGSAESHKEVLENPDS 193 (316)
T ss_pred cccCCeeecCcchhhhhcCCeEEEEEEEEEEEe---cHHHhc---cCCCcHHHHHHHccceeeeeccchhHHHHhcCHHH
Confidence 3444444555543 6689999999998888884 343444 66666777777777777777788888999999999
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEEeecccCCHHHHHHH
Q 026375 107 VSREIRKILTERAA-NFNIALDDVSITSLTFGKEFTSAI 144 (239)
Q Consensus 107 i~~~i~~~l~~~l~-~~Gi~i~~v~i~~i~~p~~~~~ai 144 (239)
|++.+.+. -|+ ..-++|.++.|-|++..+++-..+
T Consensus 194 ISk~VL~k---gLDagTAFeIlSIDIaDidVG~NIGA~L 229 (316)
T PF12127_consen 194 ISKTVLEK---GLDAGTAFEILSIDIADIDVGENIGAKL 229 (316)
T ss_pred HHHHHHhh---CCCcCceeEEEEeeeeccccchhhchhh
Confidence 98887653 333 345999999999999998876666
No 30
>PRK13665 hypothetical protein; Provisional
Probab=97.50 E-value=0.0017 Score=54.11 Aligned_cols=108 Identities=12% Similarity=0.200 Sum_probs=79.1
Q ss_pred EEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHH
Q 026375 28 YDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET 106 (239)
Q Consensus 28 v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~ 106 (239)
.++.+..++-|.- ...+||+.+.+.+.|..| .+...+. |..-.+..|...-++.+..+-|.-+-.+++++-+.
T Consensus 125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVR---aNi~rLV---GGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ 198 (316)
T PRK13665 125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVR---ANIDRLV---GGAGEETIIARVGEGIVSTIGSSESHKEVLENPDS 198 (316)
T ss_pred cccCCeeecCCcchhhcccCeEEEEEEEEEee---hhHHHHh---CCCcceeeEeeecCceeecccCcchHHHHhcCHHH
Confidence 3444444554543 668999999998888887 3444444 66666777777777777777788888899999999
Q ss_pred HHHHHHHHHHHHHhc-CCeEEEEEEeecccCCHHHHHHH
Q 026375 107 VSREIRKILTERAAN-FNIALDDVSITSLTFGKEFTSAI 144 (239)
Q Consensus 107 i~~~i~~~l~~~l~~-~Gi~i~~v~i~~i~~p~~~~~ai 144 (239)
|++.+. .+-|+. .-++|.++.|-|++..+++-..+
T Consensus 199 ISk~VL---~kGLDagTAFeIlSIDIADvdVG~NIGA~L 234 (316)
T PRK13665 199 ISKTVL---SKGLDAGTAFEILSIDIADVDVGKNIGAKL 234 (316)
T ss_pred HHHHHH---hccCCcCceeEEEEEeeeccccchhhchhh
Confidence 987664 334443 45999999999999999886666
No 31
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=96.38 E-value=0.085 Score=41.25 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=63.5
Q ss_pred ceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcCC
Q 026375 46 LQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFN 123 (239)
Q Consensus 46 ~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G 123 (239)
+-...+.+.+.|++..... ...+.. =.+.+++.+...+++.|.+|+.+ ++++|..++++.++..|..-+
T Consensus 76 ~~~~~v~i~i~l~~~n~~~---~~el~~------~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~ 146 (159)
T COG1580 76 PKDRYVKIAITLEVANKAL---LEELEE------KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ 146 (159)
T ss_pred CCcEEEEEEEEEeeCCHHH---HHHHHH------hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC
Confidence 5556788899999754433 222211 13789999999999999999995 899999999999999999866
Q ss_pred eEEEEEEeeccc
Q 026375 124 IALDDVSITSLT 135 (239)
Q Consensus 124 i~i~~v~i~~i~ 135 (239)
.|.+|.++++.
T Consensus 147 -~V~dV~fT~fi 157 (159)
T COG1580 147 -VVKDVLFTNFI 157 (159)
T ss_pred -eeEEEeeehhh
Confidence 88898888764
No 32
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=95.12 E-value=0.11 Score=38.01 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=61.9
Q ss_pred ccccCceeEEEEEEEEEeeCCC--CHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHH-
Q 026375 41 SGSRDLQMVKIGLRVLTRPVAD--KLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTE- 117 (239)
Q Consensus 41 ~~T~D~~~v~v~~~v~y~i~~~--~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~- 117 (239)
+-|+|-..+.+.++..|+.+.+ +...--.-|.....-..+-..+.|.+|..+++.+++++..+-..|-...-=..++
T Consensus 11 VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 11 VETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp EE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred EeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 4499999999999999987552 2222223335433334466788899999999999999997655544332111111
Q ss_pred -------HHhcCCeEEEEEEeecccCC
Q 026375 118 -------RAANFNIALDDVSITSLTFG 137 (239)
Q Consensus 118 -------~l~~~Gi~i~~v~i~~i~~p 137 (239)
.+..-|+.|.+|.|+++.|-
T Consensus 91 ~~~r~~~~F~~N~LvIt~vDvqsvEpv 117 (118)
T PF11978_consen 91 GEVRDGLRFPANNLVITSVDVQSVEPV 117 (118)
T ss_dssp E--SS-EEETTTTEEEEEEEEEEEEES
T ss_pred CCccceeEEcCCCeEEEEEeeeEeccC
Confidence 12456899999999998763
No 33
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=0.72 Score=37.80 Aligned_cols=94 Identities=12% Similarity=0.224 Sum_probs=61.4
Q ss_pred cccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHh-
Q 026375 42 GSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAA- 120 (239)
Q Consensus 42 ~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~- 120 (239)
..-||+.+.....+..| .+...+. |..-.+..|...-+..+..+-++..-.+++.+-+.|++.+.+ +-|.
T Consensus 139 vam~gievkakaritvr---ani~rlv---ggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~ 209 (328)
T COG4864 139 VAMNGIEVKAKARITVR---ANIERLV---GGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDS 209 (328)
T ss_pred eeccceEEEEEEEEEeh---hhHHHHh---CCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCC
Confidence 35688777766666555 3333444 555555656555555555555666777888888888887654 2232
Q ss_pred cCCeEEEEEEeecccCCHHHHHHH
Q 026375 121 NFNIALDDVSITSLTFGKEFTSAI 144 (239)
Q Consensus 121 ~~Gi~i~~v~i~~i~~p~~~~~ai 144 (239)
...++|.++.|-+++..+++-.-+
T Consensus 210 gtafeilsidiadvdigkniga~l 233 (328)
T COG4864 210 GTAFEILSIDIADVDIGKNIGAKL 233 (328)
T ss_pred CceeEEEEeeeecccccccccccc
Confidence 235899999999999988765544
No 34
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=93.29 E-value=0.7 Score=38.37 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCeEEEEEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 026375 111 IRKILTERAANFNIALDDVSITSLTFGK-EFTSAIEAKQVAAQEAERAK-YIVEKAEQDKRSAIIRAQGEATSAQLIGQA 188 (239)
Q Consensus 111 i~~~l~~~l~~~Gi~i~~v~i~~i~~p~-~~~~ai~~k~~A~q~ae~~~-~~~~~Aeaea~a~~~~Aegea~a~~~~a~a 188 (239)
+.+.+.+.+.+. +.=..+.|.++.+-+ .+-+.+.........+++.+ .....|++++++..+.|++++++..+.|++
T Consensus 121 i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea 199 (242)
T cd03405 121 LMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEA 199 (242)
T ss_pred HHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444432 333467777777653 34455544444445566654 445567777777777777777777777776
Q ss_pred hh
Q 026375 189 IA 190 (239)
Q Consensus 189 ~~ 190 (239)
.+
T Consensus 200 ~a 201 (242)
T cd03405 200 YR 201 (242)
T ss_pred HH
Confidence 63
No 35
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=93.25 E-value=2.5 Score=33.23 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 026375 81 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITSL 134 (239)
Q Consensus 81 ~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i 134 (239)
.+.+++.+-..+++.+.+|+.+ ++..|.+++.+.++..+.+- .|.+|.++++
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 3678889999999999999984 79999999999999988763 3888888765
No 36
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=92.55 E-value=2.7 Score=29.62 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhhcCHhHHH--HHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 026375 81 PSIIHETLKAVVAQYNASQLI--TQRETVSREIRKILTERAANFNIALDDVSITSL 134 (239)
Q Consensus 81 ~~~v~~~lr~~~~~~~~~ei~--~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i 134 (239)
.+.+++.+-..+++++.+++. .++..|.+++.+.+++.+.+- .|.+|.++++
T Consensus 43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 468999999999999999999 589999999999999998553 3778877764
No 37
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=92.49 E-value=1.8 Score=33.08 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=56.0
Q ss_pred CceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcC
Q 026375 45 DLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANF 122 (239)
Q Consensus 45 D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~ 122 (239)
|+-.+.+++++.+. ......-.. . -.+.+++.+-..+++++.+|+.+ ++++|.+++.+.++..+.+
T Consensus 61 ~~~ylk~~i~l~~~--~~~~~~el~--------~-~~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~- 128 (142)
T PRK07718 61 SGNFIRIQFKIETD--SKKAKEELE--------K-RDFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE- 128 (142)
T ss_pred CCCEEEEEEEEEEC--CHHHHHHHH--------h-cChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-
Confidence 35566777776654 232221111 1 14678999999999999999994 8999999999999998876
Q ss_pred CeEEEEEEeecc
Q 026375 123 NIALDDVSITSL 134 (239)
Q Consensus 123 Gi~i~~v~i~~i 134 (239)
| .|.+|.++++
T Consensus 129 g-~V~~Vyft~f 139 (142)
T PRK07718 129 G-KVEKVYITSF 139 (142)
T ss_pred C-ceEEEEEEee
Confidence 4 5888887764
No 38
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=92.37 E-value=1.4 Score=37.26 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=50.9
Q ss_pred EEEeecccCCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHHHHHHHHHH
Q 026375 128 DVSITSLTFGK-EFTSAIEAKQVAAQEAERA-KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAR 205 (239)
Q Consensus 128 ~v~i~~i~~p~-~~~~ai~~k~~A~q~ae~~-~~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~~~~le~~~ 205 (239)
.+.|.++.+-+ .+-..+.....+.+.+++. +.....|++++++.+.+|+|+|++..+.+++.+.....-..-..+.++
T Consensus 161 Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~ 240 (266)
T cd03404 161 GIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFE 240 (266)
T ss_pred CeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 67788887754 3455565444444444433 344556777777888999999999999999886544433333333333
Q ss_pred HHHHHh
Q 026375 206 EIAQTI 211 (239)
Q Consensus 206 ~~a~~~ 211 (239)
.++..+
T Consensus 241 ~~~~a~ 246 (266)
T cd03404 241 SLLAEY 246 (266)
T ss_pred HHHHHH
Confidence 333333
No 39
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=91.07 E-value=2 Score=37.78 Aligned_cols=63 Identities=10% Similarity=0.206 Sum_probs=46.2
Q ss_pred EEEeecccCCH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 026375 128 DVSITSLTFGK-EFTSAIEAKQVAAQEAERAKY-IVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 190 (239)
Q Consensus 128 ~v~i~~i~~p~-~~~~ai~~k~~A~q~ae~~~~-~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~ 190 (239)
.+.|.++.+-+ .+=..+.+..-.+..++|.+. ....|++++++..++|+|+.++.+++++|.+
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~ 266 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAER 266 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777777754 455556555556666777653 4678999999999999999888888888864
No 40
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=91.06 E-value=5.8 Score=31.74 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHhhcCHhHHH--HHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 026375 81 PSIIHETLKAVVAQYNASQLI--TQRETVSREIRKILTERAANFNIALDDVSITSL 134 (239)
Q Consensus 81 ~~~v~~~lr~~~~~~~~~ei~--~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i 134 (239)
.+.+++.+-..+++.+.+|+. .+++.|.+++.+.++..+.+- .|.+|.++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEee
Confidence 467999999999999999999 489999999999999999763 5778887765
No 41
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=90.26 E-value=6.7 Score=29.86 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhhcCHhHHH--HHHHHHHHHHHHHHHHHHhcC-C-eEEEEEEeecc
Q 026375 82 SIIHETLKAVVAQYNASQLI--TQRETVSREIRKILTERAANF-N-IALDDVSITSL 134 (239)
Q Consensus 82 ~~v~~~lr~~~~~~~~~ei~--~~R~~i~~~i~~~l~~~l~~~-G-i~i~~v~i~~i 134 (239)
+.+++.+-..+++.+.+|+. .+|++|.+++.+.++..+.+- | -.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 78999999999999999998 489999999999999999753 3 35888888765
No 42
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=90.16 E-value=5.7 Score=31.70 Aligned_cols=81 Identities=14% Similarity=0.215 Sum_probs=57.0
Q ss_pred ccCc--eeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHh
Q 026375 43 SRDL--QMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAA 120 (239)
Q Consensus 43 T~D~--~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~ 120 (239)
++|. ....+.+++.|..+... +...+ +. =.+.+++.+...+++++.+|+. ++.+|.+++.+.++..|.
T Consensus 95 LaD~~~~r~~vki~l~~e~~d~~---l~~EL-----~~-r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~ 164 (181)
T PRK06654 95 TADTPPKTFVVKLALGYAENNKN---ILNEL-----GR-RKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILR 164 (181)
T ss_pred cCCCCCceEEEEEEEEEEcCCHH---HHHHH-----Hh-ccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcC
Confidence 4444 33446777777643222 22222 11 2478999999999999999999 899999999999999888
Q ss_pred cCCeEEEEEEeeccc
Q 026375 121 NFNIALDDVSITSLT 135 (239)
Q Consensus 121 ~~Gi~i~~v~i~~i~ 135 (239)
+- .|.+|.+++..
T Consensus 165 ~G--kV~~VYFTeFv 177 (181)
T PRK06654 165 NG--EIKDIAFTQID 177 (181)
T ss_pred CC--ceEEEEEEEEE
Confidence 63 36677766643
No 43
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=89.75 E-value=8.2 Score=30.15 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcCC--eEEEEEEeecc
Q 026375 81 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFN--IALDDVSITSL 134 (239)
Q Consensus 81 ~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G--i~i~~v~i~~i 134 (239)
.+.+++.+-..++..+.+|+.+ ++.+|.+++.+.++..+..-+ -.|.+|.++++
T Consensus 102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 3678999999999999999984 899999999999999987532 46888888765
No 44
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=89.57 E-value=3.2 Score=36.23 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=28.2
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 026375 153 EAERA-KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 190 (239)
Q Consensus 153 ~ae~~-~~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~ 190 (239)
.++|. .....++++++++..+.|++++++.+++++|.+
T Consensus 218 ~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a 256 (317)
T TIGR01932 218 RSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYR 256 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 334667888888888889999888888888864
No 45
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=86.87 E-value=5.6 Score=33.59 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=43.5
Q ss_pred EEEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q 026375 127 DDVSITSLTFGK-EFTSAIEAKQVAAQEAERAK-YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIAN 191 (239)
Q Consensus 127 ~~v~i~~i~~p~-~~~~ai~~k~~A~q~ae~~~-~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~ 191 (239)
-.+.|.++.+-+ ..-+.+.........|++.+ ..+..|++++.+.+.+|+|++++..+.|+++++
T Consensus 127 ~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~ 193 (262)
T cd03407 127 YGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAE 193 (262)
T ss_pred cCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 356666665543 23444443444444555543 456778888889999999999999999988744
No 46
>PLN03086 PRLI-interacting factor K; Provisional
Probab=83.72 E-value=1.5 Score=41.27 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=18.9
Q ss_pred HHHhhcChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 026375 186 GQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSD 223 (239)
Q Consensus 186 a~a~~~~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~ 223 (239)
.+.+..+..+.-++.+++.... +++++|+||++
T Consensus 67 ~~~~~~~~g~~~~~~~~~~~~~-----~~GdKI~LPpS 99 (567)
T PLN03086 67 QESLQAGRGIVFSRIFEAVSFQ-----GNGDKIKLPPS 99 (567)
T ss_pred HHHHHcCCCeEEEEEeeccccC-----CCCCeEEcCHH
Confidence 3333334333333556666542 56789999976
No 47
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=81.34 E-value=24 Score=27.71 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcC-C-eEEEEEEeecc
Q 026375 81 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANF-N-IALDDVSITSL 134 (239)
Q Consensus 81 ~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~-G-i~i~~v~i~~i 134 (239)
.+.+++.+-..+++.+.+|+.+ +++.|.+++...++..++.. | -.|.+|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 3688999999999999999984 79999999999998888653 3 36888888765
No 48
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=81.23 E-value=5.4 Score=32.31 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHH-HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-H
Q 026375 107 VSREIRKILTER-AANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQ-L 184 (239)
Q Consensus 107 i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~~~~~Aeaea~a~~~~Aegea~a~~-~ 184 (239)
+.+.+...+... +.=..+.|.++.+.+ .+-+.+.+.+.+++.++. .+..|++++++.++.|+|++++.. .
T Consensus 117 i~~~l~~~l~~~Gi~v~~v~i~~i~~p~-~~~~ai~~~~~A~~~~~a-------~i~~A~ge~~a~~~~aea~~~~~~~~ 188 (215)
T cd03403 117 LVEILDEATDPWGVKVERVEIKDIILPQ-EIQEAMAKQAEAEREKRA-------KIIEAEGERQAAILLAEAAKQAAINP 188 (215)
T ss_pred HHHHHHHHHhccCeEEEEEEEeeecCCH-HHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHccCH
Confidence 334444444432 233358899999865 566778888877775432 366788899999999988887654 4
Q ss_pred HHHHh
Q 026375 185 IGQAI 189 (239)
Q Consensus 185 ~a~a~ 189 (239)
.+.++
T Consensus 189 ~~~~~ 193 (215)
T cd03403 189 AALQL 193 (215)
T ss_pred HHHHH
Confidence 33333
No 49
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=79.32 E-value=16 Score=30.59 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=31.4
Q ss_pred EEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 026375 128 DVSITSLTFGK-EFTSAIEAKQVAAQEAERAK-YIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189 (239)
Q Consensus 128 ~v~i~~i~~p~-~~~~ai~~k~~A~q~ae~~~-~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~ 189 (239)
.+.|.++.+-. ..-..+.....+.+.+++.+ ..+..|+++++..+.+|+|+|++..+.|+++
T Consensus 134 GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~ 197 (261)
T TIGR01933 134 GITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGY 197 (261)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777655 23444433333333343333 2233445555555556666666655666654
No 50
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.88 E-value=22 Score=33.41 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhh---HHH-HHHHHHHHHHHH
Q 026375 163 KAEQDKRSAIIRAQGEATSAQLIGQAIANNPAF---ITL-RKIEAAREIAQT 210 (239)
Q Consensus 163 ~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~---~~~-~~le~~~~~a~~ 210 (239)
...+++++...++++||++.+.+++++...-+- ..+ ..++++..+++.
T Consensus 421 ~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~~~vq~Lp~~~~~ 472 (548)
T COG2268 421 EIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQALPEVAEE 472 (548)
T ss_pred HHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666777888899987532222 222 445665555544
No 51
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=75.17 E-value=24 Score=28.73 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=54.5
Q ss_pred ecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHH--HHHHHHHHHHHHH
Q 026375 39 STSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQ--RETVSREIRKILT 116 (239)
Q Consensus 39 ~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~--R~~i~~~i~~~l~ 116 (239)
.++.|+||..+.+-+.+.-+-. + .......|+..+.+.+.+.++++++++++.. -+.|..++....+
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r---a--------~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k 168 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR---A--------RTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAK 168 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh---h--------hhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhh
Confidence 3467999999888877654311 1 1223345888999999999999999999963 4666666666655
Q ss_pred HHHhcCCeEEEEEEe
Q 026375 117 ERAANFNIALDDVSI 131 (239)
Q Consensus 117 ~~l~~~Gi~i~~v~i 131 (239)
.-.--..++|.-+.+
T Consensus 169 ~IyPlr~veIrKvkv 183 (203)
T PRK04057 169 KIYPLRRVEIRKSKV 183 (203)
T ss_pred hccCcceEEEEEEEE
Confidence 443333455555544
No 52
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=70.39 E-value=17 Score=33.05 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCeEE--EEEEeecccCCHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 026375 111 IRKILTERAANFNIAL--DDVSITSLTFGKE-FTSAIEAKQVAAQEAE-RAKYIVEKAEQDKRSAIIRAQGEATSAQLIG 186 (239)
Q Consensus 111 i~~~l~~~l~~~Gi~i--~~v~i~~i~~p~~-~~~ai~~k~~A~q~ae-~~~~~~~~Aeaea~a~~~~Aegea~a~~~~a 186 (239)
|...+.+.+.+. +.= ..|.|.++.+-+. .=+.+.+.......|+ ..+..+..|++++...+.+|+|+|+.....|
T Consensus 212 I~~~i~~~l~e~-l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~A 290 (419)
T PRK10930 212 IRSDTQRELEET-IRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEA 290 (419)
T ss_pred HHHHHHHHHHHH-HhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455442 221 2466677766543 3333322221222222 2233455666667777777777777766667
Q ss_pred HHhh
Q 026375 187 QAIA 190 (239)
Q Consensus 187 ~a~~ 190 (239)
+|++
T Consensus 291 eAyr 294 (419)
T PRK10930 291 RAYK 294 (419)
T ss_pred HHHH
Confidence 7764
No 53
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.76 E-value=20 Score=32.68 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 026375 154 AERAKYIVEKAEQDKRSAIIRAQGEAT 180 (239)
Q Consensus 154 ae~~~~~~~~Aeaea~a~~~~Aegea~ 180 (239)
+.+-+.+...|++|++....+|.+|++
T Consensus 202 aqrr~tE~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 202 AQRRKTEMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 344455677788887777777777766
No 54
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=65.36 E-value=93 Score=30.12 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=24.4
Q ss_pred HHHHHH-HHhcCCeEEEEEE----eecccCCHHHHHHHHHHHHHH
Q 026375 112 RKILTE-RAANFNIALDDVS----ITSLTFGKEFTSAIEAKQVAA 151 (239)
Q Consensus 112 ~~~l~~-~l~~~Gi~i~~v~----i~~i~~p~~~~~ai~~k~~A~ 151 (239)
-+.+++ .|.+.||.|++-. +=....|++++...++|..++
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~ 564 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALK 564 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHH
Confidence 456666 5888999999852 222334566666665554333
No 55
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=64.12 E-value=56 Score=26.35 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.9
Q ss_pred EEEEcC
Q 026375 217 KVFLNS 222 (239)
Q Consensus 217 ~i~l~~ 222 (239)
.|+++.
T Consensus 122 ~I~~~~ 127 (198)
T PRK01558 122 EIILNE 127 (198)
T ss_pred eEEECH
Confidence 455543
No 56
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=56.95 E-value=53 Score=26.56 Aligned_cols=82 Identities=11% Similarity=0.202 Sum_probs=48.5
Q ss_pred ecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHH
Q 026375 39 STSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTER 118 (239)
Q Consensus 39 ~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~ 118 (239)
.++.|+||..+.+-+.+.=+-. . ....-..|+..+.+.+.+.++..++++++..- +...+..++...
T Consensus 106 ~dvkT~DGy~lRvf~i~fT~~r-a----------~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~l--i~~~i~~eI~k~ 172 (194)
T PF01015_consen 106 VDVKTKDGYLLRVFCIAFTKKR-A----------KSSQIKAIRKKMVEIITEEASELDLKELVKKL--IPGSIGKEIEKA 172 (194)
T ss_dssp EEEEETTTEEEEEEEEEEE---------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHH--CTTHHHHHHHHH
T ss_pred EEEEcCCCcEEEEEEEEEEeec-c----------cchHHHHHHHHHHHHHHHHhccCcHHHHHHHH--ccchHHHHHHHH
Confidence 3467999998877665543211 1 12223458889999999999999999999632 333344444444
Q ss_pred HhcCCeEEEEEEeecc
Q 026375 119 AANFNIALDDVSITSL 134 (239)
Q Consensus 119 l~~~Gi~i~~v~i~~i 134 (239)
+.+. +-+.+|.|+.+
T Consensus 173 ~k~I-yPl~~v~IrKv 187 (194)
T PF01015_consen 173 CKKI-YPLRNVEIRKV 187 (194)
T ss_dssp HCTT---EEEEEEEEE
T ss_pred hccc-cccceEEEEEE
Confidence 4442 23335555443
No 57
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=52.63 E-value=1.1e+02 Score=23.79 Aligned_cols=6 Identities=0% Similarity=-0.081 Sum_probs=2.3
Q ss_pred HhHHHH
Q 026375 97 ASQLIT 102 (239)
Q Consensus 97 ~~ei~~ 102 (239)
+..++.
T Consensus 29 I~~~Le 34 (154)
T PRK06568 29 ILNSLD 34 (154)
T ss_pred HHHHHH
Confidence 333443
No 58
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=50.12 E-value=86 Score=24.81 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHh
Q 026375 164 AEQDKRSAIIRAQ 176 (239)
Q Consensus 164 Aeaea~a~~~~Ae 176 (239)
+++++++..+.++
T Consensus 34 ~ea~~~a~~i~~~ 46 (188)
T PRK02292 34 AEAEADAEEILED 46 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333333
No 59
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=49.61 E-value=74 Score=27.02 Aligned_cols=29 Identities=41% Similarity=0.511 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 026375 161 VEKAEQDKRSAIIRAQGEATSAQLIGQAI 189 (239)
Q Consensus 161 ~~~Aeaea~a~~~~Aegea~a~~~~a~a~ 189 (239)
...|+.++.+.+.+|+|++++..+.+++-
T Consensus 182 ~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~ 210 (291)
T COG0330 182 QMAAERDKRAEILEAEGEAQAAILRAEGE 210 (291)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhhhhhhhh
Confidence 44566777777777777777666555443
No 60
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=44.58 E-value=1.7e+02 Score=23.83 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=8.5
Q ss_pred cChhhHHHHHHHHHH
Q 026375 191 NNPAFITLRKIEAAR 205 (239)
Q Consensus 191 ~~p~~~~~~~le~~~ 205 (239)
.+|++++-.-++...
T Consensus 106 ~d~~~l~~lI~~~v~ 120 (207)
T PRK01005 106 TDPEVSAKLIQALVQ 120 (207)
T ss_pred cCHHHHHHHHHHHHH
Confidence 478887754443333
No 61
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=42.10 E-value=2e+02 Score=24.17 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=9.1
Q ss_pred CHhHHHHHH-HHHHHHHHH
Q 026375 96 NASQLITQR-ETVSREIRK 113 (239)
Q Consensus 96 ~~~ei~~~R-~~i~~~i~~ 113 (239)
++-.++..| ..|...+.+
T Consensus 29 Pi~~~l~eR~~~I~~~l~~ 47 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQD 47 (250)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455666555 444444433
No 62
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=40.75 E-value=2.1e+02 Score=23.79 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=9.1
Q ss_pred CHhHHHHHH-HHHHHHHHH
Q 026375 96 NASQLITQR-ETVSREIRK 113 (239)
Q Consensus 96 ~~~ei~~~R-~~i~~~i~~ 113 (239)
++..++..| ..|...+.+
T Consensus 29 Pi~~~l~~R~~~I~~~l~~ 47 (246)
T TIGR03321 29 PILDAMDAREKKIAGELAD 47 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455566544 445555443
No 63
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=39.37 E-value=1.8e+02 Score=22.65 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=7.7
Q ss_pred CHhHHHHHH-HHHHHHH
Q 026375 96 NASQLITQR-ETVSREI 111 (239)
Q Consensus 96 ~~~ei~~~R-~~i~~~i 111 (239)
++..++..| ..|...+
T Consensus 40 pi~~~l~~R~~~I~~~l 56 (173)
T PRK13460 40 VILKALDERASGVQNDI 56 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 455566544 3444443
No 64
>PRK15322 invasion protein OrgB; Provisional
Probab=38.30 E-value=1.3e+02 Score=24.58 Aligned_cols=8 Identities=13% Similarity=-0.097 Sum_probs=4.8
Q ss_pred CEEEEcCC
Q 026375 216 NKVFLNSD 223 (239)
Q Consensus 216 ~~i~l~~~ 223 (239)
-.++||.+
T Consensus 113 L~l~lP~~ 120 (210)
T PRK15322 113 LFLTLPVN 120 (210)
T ss_pred eeEecChh
Confidence 35677764
No 65
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=37.20 E-value=1.3e+02 Score=22.01 Aligned_cols=31 Identities=10% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH--HHHHhhHHHHHHHHHHHhhc
Q 026375 161 VEKAEQDKRSA--IIRAQGEATSAQLIGQAIAN 191 (239)
Q Consensus 161 ~~~Aeaea~a~--~~~Aegea~a~~~~a~a~~~ 191 (239)
+..|+.+|+.. .-+++-|++..+-.++....
T Consensus 33 LKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~ 65 (113)
T TIGR01147 33 LKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGG 65 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44444444333 34455566666666665543
No 66
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=36.88 E-value=71 Score=25.29 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 026375 161 VEKAEQDKRSAIIRAQGEATSAQLIGQA 188 (239)
Q Consensus 161 ~~~Aeaea~a~~~~Aegea~a~~~~a~a 188 (239)
.+.+++++++..+.++++.+|.++..++
T Consensus 20 ~I~~ea~~~~~~i~~ea~~~a~~i~~~~ 47 (188)
T PRK02292 20 EIRAEADEEAEEIIAEAEADAEEILEDR 47 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665554433
No 67
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=36.18 E-value=1.1e+02 Score=24.14 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=13.6
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 026375 169 RSAIIRAQGEATSAQLIGQA 188 (239)
Q Consensus 169 ~a~~~~Aegea~a~~~~a~a 188 (239)
+..+.+|+++|++..+.|++
T Consensus 172 ~~~~~~a~~ea~~~~~~A~g 191 (196)
T cd03401 172 KFVVEKAEQEKQAAVIRAEG 191 (196)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33567778888777776665
No 68
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=33.05 E-value=2.3e+02 Score=21.95 Aligned_cols=17 Identities=6% Similarity=0.194 Sum_probs=8.6
Q ss_pred HhHHHHH-HHHHHHHHHH
Q 026375 97 ASQLITQ-RETVSREIRK 113 (239)
Q Consensus 97 ~~ei~~~-R~~i~~~i~~ 113 (239)
+..++.. ++.|...+.+
T Consensus 35 i~~~le~R~~~I~~~l~~ 52 (167)
T PRK14475 35 LAGALDAYAAKIQAELDE 52 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4456644 4555555543
No 69
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=32.79 E-value=2.8e+02 Score=22.77 Aligned_cols=85 Identities=9% Similarity=0.172 Sum_probs=56.5
Q ss_pred eeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHH
Q 026375 36 LVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT--QRETVSREIRK 113 (239)
Q Consensus 36 ~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~ 113 (239)
+...++.|+||..+.|-+.+.-.= .+ .......|+..+.+.+.+..+..++++++. --+.+..+|.+
T Consensus 105 dai~dVkTkDGy~~RV~~~~~T~~---ra--------~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~ 173 (214)
T COG1890 105 DAIVDVKTKDGYVLRVKAMAFTRR---RA--------KTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEE 173 (214)
T ss_pred eeEEEEEecCCcEEEEEEEEEEeh---hc--------ccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHH
Confidence 333457899999999887764331 10 123345588899999999999999999985 33666666666
Q ss_pred HHHHHHhcCCeEEEEEEe
Q 026375 114 ILTERAANFNIALDDVSI 131 (239)
Q Consensus 114 ~l~~~l~~~Gi~i~~v~i 131 (239)
..++..-=.-++|.-+.+
T Consensus 174 ~akkIyPLr~veIrK~kv 191 (214)
T COG1890 174 AAKKIYPLRKVEIRKSKV 191 (214)
T ss_pred HhhhcccchheEEEeeee
Confidence 655443223466666555
No 70
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=31.83 E-value=1e+02 Score=26.24 Aligned_cols=139 Identities=21% Similarity=0.273 Sum_probs=71.8
Q ss_pred cchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHH-hcCCeEEEEEEe-ecccCCHHHHHHHHHHHHHHH---HH
Q 026375 80 LPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERA-ANFNIALDDVSI-TSLTFGKEFTSAIEAKQVAAQ---EA 154 (239)
Q Consensus 80 l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l-~~~Gi~i~~v~i-~~i~~p~~~~~ai~~k~~A~q---~a 154 (239)
....+++.+-...=...++|=-+--..+.+.+...+..-= .-.-.+|.++.. .++.-.-+.+.+-+++..|+- |+
T Consensus 103 aqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAailesEg 182 (301)
T KOG2620|consen 103 AQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILESEG 182 (301)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4556666665544444555544444555566655554432 223456666664 334444444444444444432 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHhhcChh-----------------hHHHHHHHHHHH
Q 026375 155 ERAKYIVEKAEQDKRSAIIRAQG-----------EATSAQLIGQAIANNPA-----------------FITLRKIEAARE 206 (239)
Q Consensus 155 e~~~~~~~~Aeaea~a~~~~Aeg-----------ea~a~~~~a~a~~~~p~-----------------~~~~~~le~~~~ 206 (239)
+|.. .+..||+++++++...+| ++++....+++-..+-. +...+|+-+..+
T Consensus 183 er~~-~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~ 261 (301)
T KOG2620|consen 183 ERIA-QINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGK 261 (301)
T ss_pred hhHH-hhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhh
Confidence 4433 467777777776555444 55554444444311100 111255555555
Q ss_pred HHHHhcCCCCEEEEcCC
Q 026375 207 IAQTIAHSANKVFLNSD 223 (239)
Q Consensus 207 ~a~~~~~~~~~i~l~~~ 223 (239)
+| +.+|++|||++
T Consensus 262 la----k~sntv~lP~~ 274 (301)
T KOG2620|consen 262 LA----KKSNTVFLPHG 274 (301)
T ss_pred hc----ccCceEEecCC
Confidence 54 66899999987
No 71
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=31.74 E-value=43 Score=25.62 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeecccCCH
Q 026375 109 REIRKILTERAANFNIALDDVSITSLTFGK 138 (239)
Q Consensus 109 ~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~ 138 (239)
-++++.+.+.|.++|++|.++.-.+.++|+
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D~G~~~~dypd 41 (141)
T PRK12613 12 NALKELIKSFLQEEGYDIIDVTDINSDFID 41 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCChHH
Confidence 357788888899999999998865666665
No 72
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=29.22 E-value=99 Score=19.02 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=23.9
Q ss_pred HHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHh
Q 026375 88 LKAVVAQYNASQLITQRETVSREIRKILTERAA 120 (239)
Q Consensus 88 lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~ 120 (239)
=...+++|+.+||...|.+|...+--.+-+.|.
T Consensus 8 N~~rL~~MS~eEI~~er~eL~~~LdP~li~~L~ 40 (49)
T PF08621_consen 8 NEARLASMSPEEIEEEREELLESLDPKLIEFLK 40 (49)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 356789999999999888887766555444443
No 73
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=26.92 E-value=3.4e+02 Score=21.95 Aligned_cols=9 Identities=11% Similarity=0.479 Sum_probs=4.3
Q ss_pred CHhHHHHHH
Q 026375 96 NASQLITQR 104 (239)
Q Consensus 96 ~~~ei~~~R 104 (239)
++..++..|
T Consensus 72 Pi~~~L~~R 80 (205)
T PRK06231 72 PTQRFLNKR 80 (205)
T ss_pred HHHHHHHHH
Confidence 345555444
No 74
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=26.84 E-value=3.2e+02 Score=21.54 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=10.6
Q ss_pred cCHhHHHHHH-HHHHHHHHH
Q 026375 95 YNASQLITQR-ETVSREIRK 113 (239)
Q Consensus 95 ~~~~ei~~~R-~~i~~~i~~ 113 (239)
.++..++..| ..|...+.+
T Consensus 47 kPI~~~l~~R~~~I~~~l~~ 66 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRN 66 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 4666777655 445554443
No 75
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=26.51 E-value=3.1e+02 Score=21.35 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=7.5
Q ss_pred CHhHHHHHH-HHHHHHH
Q 026375 96 NASQLITQR-ETVSREI 111 (239)
Q Consensus 96 ~~~ei~~~R-~~i~~~i 111 (239)
++..++..| ..|...+
T Consensus 42 pi~~~l~~R~~~I~~~l 58 (175)
T PRK14472 42 PILSALEEREKGIQSSI 58 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 355566544 3344433
No 76
>PF07024 ImpE: ImpE protein; InterPro: IPR009211 This entry contains proteins of unknown function that occur in bacteria that interact with and manipulate eukaryotic cells []. Salmonella enterica protein SciE is encoded in the centisome 7 genomic island (SCI) []. Deletion of the entire island affects the ability of bacteria to enter eukaryotic cells []. Therefore, SciE and other SCI proteins may be involved in virulence. Interestingly, another member of this family, Rhizobium leguminosarum protein ImpE, has been reported to be encoded by an avirulence locus involved in temperature-dependent protein secretion []. It is believed that the imp locus is involved in the secretion to the environment of proteins, including periplasmic RbsB protein, that cause blocking of R. leguminosarum infection in plants [].; PDB: 1ZBP_A.
Probab=26.39 E-value=2e+02 Score=21.47 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=33.6
Q ss_pred CcCCCCccccCCcceEEcccccceEEEEeeeee--Ee--e-eecccccCceeEEEEEEEEEeeC
Q 026375 2 KNLDLFACVYPEGTHLMVPWFERPVIYDVRARP--HL--V-ESTSGSRDLQMVKIGLRVLTRPV 60 (239)
Q Consensus 2 ~rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~--~~--~-~~~~~T~D~~~v~v~~~v~y~i~ 60 (239)
.|+|-+-.++-.|-|+.+|| .++..+....-. .+ . +.++.-.||-....-+-+.|--.
T Consensus 13 ~RlGpvlE~~~~G~Y~WvPf-~~I~~l~~~~p~~l~DlvWrpa~i~l~dG~~~~~~iP~rYp~s 75 (123)
T PF07024_consen 13 DRLGPVLEVITNGRYYWVPF-SRIASLEFEPPASLRDLVWRPAEITLRDGGEGEGFIPARYPGS 75 (123)
T ss_dssp TTTTTEEEEETTS-EEEEEG-GGEEEEEE----SSGGGTEEEEEEEETTTEEEEEEEE-B-TT-
T ss_pred cCCceeEEEEECCEEEEEEH-HHccceecCCCCCHHHhcccceEEEEeCCCeEEEEEecccCCc
Confidence 37888877778899999999 566655443211 11 1 12234678877777778888643
No 77
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=24.22 E-value=3.5e+02 Score=21.06 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=7.9
Q ss_pred CHhHHHHHH-HHHHHHH
Q 026375 96 NASQLITQR-ETVSREI 111 (239)
Q Consensus 96 ~~~ei~~~R-~~i~~~i 111 (239)
++.+++..| +.|...+
T Consensus 46 Pi~~~l~~R~~~I~~~l 62 (167)
T PRK08475 46 PLKNFYKSRINKISKRL 62 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 455566544 3444444
No 78
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=23.45 E-value=3.4e+02 Score=20.70 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.4
Q ss_pred HhHHHHHH
Q 026375 97 ASQLITQR 104 (239)
Q Consensus 97 ~~ei~~~R 104 (239)
+..++..|
T Consensus 27 i~~~l~~R 34 (159)
T PRK09173 27 IARSLDAR 34 (159)
T ss_pred HHHHHHHH
Confidence 34445433
No 79
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=23.22 E-value=2.9e+02 Score=19.78 Aligned_cols=46 Identities=9% Similarity=0.084 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHH
Q 026375 86 ETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIE 145 (239)
Q Consensus 86 ~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~ 145 (239)
..+|..+|+=+...|...-..+....... . ......+|+.+...+.
T Consensus 23 ~~Vr~~lG~GS~~ti~~~l~~w~~~~~~~-----------~---~~~~~~lP~~l~~~~~ 68 (120)
T PF11740_consen 23 RAVRERLGGGSMSTISKHLKEWREEREAQ-----------V---SEAAPDLPEALQDALA 68 (120)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhcc-----------c---cccccCCChhHHHHHH
Confidence 35666666555555544333322222111 1 4566778999977773
No 80
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.14 E-value=4.1e+02 Score=21.53 Aligned_cols=18 Identities=11% Similarity=0.468 Sum_probs=9.1
Q ss_pred CHhHHHHHH-HHHHHHHHH
Q 026375 96 NASQLITQR-ETVSREIRK 113 (239)
Q Consensus 96 ~~~ei~~~R-~~i~~~i~~ 113 (239)
++..++..| +.|..++.+
T Consensus 77 pI~~vLe~R~~~I~~~L~~ 95 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQ 95 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 355566544 445554443
No 81
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=23.03 E-value=1.5e+02 Score=23.55 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 026375 162 EKAEQDKRSAIIRAQGEATSAQLIGQA 188 (239)
Q Consensus 162 ~~Aeaea~a~~~~Aegea~a~~~~a~a 188 (239)
+..++++++..|.++++++|.++++++
T Consensus 10 I~~ea~~~a~~I~~eA~~~aeei~~ea 36 (185)
T PRK01194 10 IEKSREEKKKEINDEYSKRIEKLEKEC 36 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 82
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=22.93 E-value=81 Score=24.18 Aligned_cols=30 Identities=3% Similarity=0.011 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEe---ecccCCH
Q 026375 109 REIRKILTERAANFNIALDDVSI---TSLTFGK 138 (239)
Q Consensus 109 ~~i~~~l~~~l~~~Gi~i~~v~i---~~i~~p~ 138 (239)
-++++.|.+.|.+.|++|.++.- ..+++|+
T Consensus 11 ~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd 43 (143)
T TIGR01120 11 FILKEEIKAFLVERGVKVIDKGTWSSERTDYPH 43 (143)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHH
Confidence 35778888889999999999875 3344544
No 83
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.86 E-value=5.9e+02 Score=24.06 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=9.6
Q ss_pred HHHHHHHHhhcCHhHHHHHHHH
Q 026375 85 HETLKAVVAQYNASQLITQRET 106 (239)
Q Consensus 85 ~~~lr~~~~~~~~~ei~~~R~~ 106 (239)
+..+|+++-.....+++..-+.
T Consensus 477 r~~vRe~a~~~~~~~iL~l~d~ 498 (586)
T KOG2007|consen 477 REKVREVAREKKVPEILELCDT 498 (586)
T ss_pred HHHHHHHHHhcchHHHHHHhHH
Confidence 3444444444444444443333
No 84
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.75 E-value=6e+02 Score=23.31 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=8.4
Q ss_pred HhHHHHHH-HHHHHHHHH
Q 026375 97 ASQLITQR-ETVSREIRK 113 (239)
Q Consensus 97 ~~ei~~~R-~~i~~~i~~ 113 (239)
+..++..| +.|.+.+.+
T Consensus 26 i~~~l~~R~~~I~~~L~e 43 (445)
T PRK13428 26 VRRLMAARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 44566544 445554443
No 85
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=22.51 E-value=4.9e+02 Score=22.25 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHH--HHHH----HHHHHHHHHHHHhcCCeEE--EEEEee
Q 026375 61 ADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQ--RETV----SREIRKILTERAANFNIAL--DDVSIT 132 (239)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~--R~~i----~~~i~~~l~~~l~~~Gi~i--~~v~i~ 132 (239)
.-++..+|..++ ++........+.+.+|+.+. ++++. -+++ .+.+...+.+.+.+. +.- ..+.|.
T Consensus 76 ivdp~~~~~~~~-~y~~~~~~~~I~~~Vrsavr-----~vig~~tldeVis~~Rd~I~~~I~~~l~e~-l~~y~~GI~I~ 148 (280)
T cd03406 76 FLIPDSVYDIVK-NYTADYDKTLIFNKIHHELN-----QFCSVHTLQEVYIDLFDQIDENLKLALQKD-LTRMAPGLEIQ 148 (280)
T ss_pred ecCHHHHHHHHH-HHhHhhHHHHHHHHHHHHHH-----HHhhhCCHHHHHhccHHHHHHHHHHHHHHH-HhccCCCcEEE
Confidence 344555555442 23222345555555555433 23321 1222 234555555555553 221 267777
Q ss_pred cccCCH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 026375 133 SLTFGK-EFTSAIEAKQVAAQEAERAKY-----IVEKAEQDKRSAIIRAQGEATSAQLIGQA 188 (239)
Q Consensus 133 ~i~~p~-~~~~ai~~k~~A~q~ae~~~~-----~~~~Aeaea~a~~~~Aegea~a~~~~a~a 188 (239)
++.+-+ .+=+.+.+. ...-.+||.+. ....++.+|+...+.+--+|++...++.-
T Consensus 149 dV~I~~id~P~~V~~a-ferM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~ 209 (280)
T cd03406 149 AVRVTKPKIPEAIRRN-YELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKI 209 (280)
T ss_pred EEEEEecCCCHHHHHH-HHHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHH
Confidence 777653 455555432 33334555542 11234444444444444444444444443
No 86
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=21.50 E-value=88 Score=23.84 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeeccc
Q 026375 109 REIRKILTERAANFNIALDDVSITSLT 135 (239)
Q Consensus 109 ~~i~~~l~~~l~~~Gi~i~~v~i~~i~ 135 (239)
-++++.+.+.|.++|++|.++.-.+-+
T Consensus 11 ~~lK~~i~~~L~~~g~eV~D~G~~~~~ 37 (140)
T PF02502_consen 11 FELKEAIKEYLEEKGYEVIDFGTYSED 37 (140)
T ss_dssp HHHHHHHHHHHHHTTEEEEEESESSTS
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 357778888888999999999987744
No 87
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.54 E-value=4.2e+02 Score=20.65 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=8.5
Q ss_pred CHhHHHHHH-HHHHHHHH
Q 026375 96 NASQLITQR-ETVSREIR 112 (239)
Q Consensus 96 ~~~ei~~~R-~~i~~~i~ 112 (239)
++.+++..| ..|...+.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (173)
T PRK13453 42 PLKDVMDKRERDINRDID 59 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666544 44444443
No 88
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=20.26 E-value=3.7e+02 Score=19.89 Aligned_cols=8 Identities=13% Similarity=0.551 Sum_probs=3.8
Q ss_pred HhHHHHHH
Q 026375 97 ASQLITQR 104 (239)
Q Consensus 97 ~~ei~~~R 104 (239)
+..++..|
T Consensus 30 i~~~l~~R 37 (140)
T PRK07353 30 VGKVVEER 37 (140)
T ss_pred HHHHHHHH
Confidence 44555444
Done!