Query 026375
Match_columns 239
No_of_seqs 172 out of 1321
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 12:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 3.1E-31 1E-35 213.0 16.3 171 21-209 2-176 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 2.3E-25 7.7E-30 169.0 12.4 128 17-148 3-131 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.9 6.1E-23 2.1E-27 157.5 6.3 128 21-148 3-136 (143)
4 2rpb_A Hypothetical membrane p 99.8 1.5E-19 5.3E-24 133.0 6.0 109 27-139 4-113 (113)
5 2zuo_A MVP, major vault protei 98.5 7.5E-06 2.5E-10 76.7 18.7 105 40-144 528-654 (861)
6 2kk7_A V-type ATP synthase sub 73.9 6.1 0.00021 23.8 4.4 23 166-188 19-41 (52)
7 3j20_A 30S ribosomal protein S 62.5 53 0.0018 25.5 10.2 81 39-130 107-189 (198)
8 2xzm_4 40S ribosomal protein S 44.5 1.3E+02 0.0043 24.5 10.6 96 38-138 127-228 (265)
9 2b5u_A Colicin E3; high resolu 42.4 1.4E+02 0.0046 26.7 8.8 33 122-154 278-310 (551)
10 3v6i_A V-type ATP synthase sub 42.2 35 0.0012 25.9 4.8 9 214-222 116-124 (187)
11 3v6i_B V-type ATP synthase, su 38.6 94 0.0032 21.3 8.2 10 161-170 33-42 (105)
12 4efa_E V-type proton ATPase su 37.2 1.3E+02 0.0044 23.5 7.6 9 137-145 10-18 (233)
13 3v6i_B V-type ATP synthase, su 36.4 1E+02 0.0035 21.1 6.8 21 161-181 22-42 (105)
14 3bk6_A PH stomatin; archaea, t 34.8 1.1E+02 0.0039 22.8 6.7 64 106-177 88-152 (188)
15 2acm_B Mucin-1; auto-catalytic 33.9 61 0.0021 19.6 3.8 21 119-139 32-52 (55)
16 3u5c_B RP10A, 40S ribosomal pr 28.3 37 0.0013 27.5 2.9 88 39-133 125-214 (255)
17 4efa_G V-type proton ATPase su 27.0 1.6E+02 0.0054 20.8 5.7 16 173-188 51-66 (119)
18 2kk7_A V-type ATP synthase sub 21.1 1.4E+02 0.0047 17.6 6.7 22 162-183 26-47 (52)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.1e-31 Score=213.01 Aligned_cols=171 Identities=22% Similarity=0.345 Sum_probs=146.5
Q ss_pred cccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhH
Q 026375 21 WFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQ 99 (239)
Q Consensus 21 ~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~e 99 (239)
|++++..||++.++++++.+ +.|+||++|++++++.|||. ++..++. ....+...+.+.+++++|+++|+|+++|
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~--dp~~~~~--~v~~~~~~i~~~~~~~lR~vig~~~l~e 77 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAVT--QVKNYIMATSQISQTTLRSVIGQAHLDE 77 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEES--CHHHHHH--SSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEEC--CHHHHHH--HhcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence 57899999999999999875 89999999999999999985 3444443 4445566788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 026375 100 LITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEA 179 (239)
Q Consensus 100 i~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~~~~~Aeaea~a~~~~Aegea 179 (239)
++++|++|+..+.+.+++.+.+|||+|.+|.|++|.||+++.++|++++ .|++++++++++|+|++
T Consensus 78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~--------------~Aere~~A~i~~Aege~ 143 (188)
T 3bk6_A 78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQA--------------EAERERRARITLAEAER 143 (188)
T ss_dssp HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999997432 36677888899999999
Q ss_pred HHHHHHHHHh---hcChhhHHHHHHHHHHHHHH
Q 026375 180 TSAQLIGQAI---ANNPAFITLRKIEAAREIAQ 209 (239)
Q Consensus 180 ~a~~~~a~a~---~~~p~~~~~~~le~~~~~a~ 209 (239)
+|.+++++|+ +.+|.++++|+||++.++++
T Consensus 144 ~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~ 176 (188)
T 3bk6_A 144 QAAEKLREAAEIISEHPMALQLRTLQTISDVAG 176 (188)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence 9999998884 46999999999999999986
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.93 E-value=2.3e-25 Score=169.02 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=100.6
Q ss_pred EEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhc
Q 026375 17 LMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQY 95 (239)
Q Consensus 17 ~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~ 95 (239)
+..||++++.++|+|.++++++.+ ++|+|+..+.|+++++|||. ++..++. +.+.++..+...+++++|+++|++
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~--Dp~~~~~--~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQ--NATLAVA--NITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEES--CHHHHHH--SSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEe--ehHHhHh--hhhhHHHHHHHHHHHHHHHHhccc
Confidence 788999999999999999999886 99999999999999999984 4555553 567788889999999999999999
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHH
Q 026375 96 NASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQ 148 (239)
Q Consensus 96 ~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~ 148 (239)
++++++++|++|+..+++.+++.+++|||+|.+|.|+++.||+++.+||.+++
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~ 131 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEA 131 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC---------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999996443
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.87 E-value=6.1e-23 Score=157.49 Aligned_cols=128 Identities=9% Similarity=0.119 Sum_probs=111.4
Q ss_pred cccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCC--CCHHHHHHHh-C--ccccccccchHHHHHHHHHHhh
Q 026375 21 WFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVA--DKLPTVYRAL-G--ENYNERVLPSIIHETLKAVVAQ 94 (239)
Q Consensus 21 ~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~--~~~~~~~~~~-~--~~~~~~~l~~~v~~~lr~~~~~ 94 (239)
|++++.++|++.++++++.+ +.|+|++++.|+++++|||.. ......+.+| + .+..+..+.+.+++.+|+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999987 999999999999999999952 3333333333 3 2445677889999999999999
Q ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHH
Q 026375 95 YNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQ 148 (239)
Q Consensus 95 ~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~ 148 (239)
++++|++++|++|.+.+.+.+++.+.+|||+|.+|.|++|++|+++.+||+.++
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~ 136 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQ 136 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999996443
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.78 E-value=1.5e-19 Score=132.98 Aligned_cols=109 Identities=13% Similarity=0.190 Sum_probs=96.8
Q ss_pred EEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHH
Q 026375 27 IYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRE 105 (239)
Q Consensus 27 ~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~ 105 (239)
.+|+|.++++++.+ +.|+|++++.+++++.|||.. +..++.++ ..++..|.+.+++++|+++|+++++|++++|+
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~d--p~~~~~~v--~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~ 79 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVID--PVKAVYNV--SDFLMAIVKLAQTNLRAIIGEMELDETLSGRD 79 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESC--TTTCTTTT--THHHHHHHHHHHHHHHHHHTSCCTTHHHHCHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECC--HHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHH
Confidence 57899999999875 999999999999999999843 33344433 34567799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHH
Q 026375 106 TVSREIRKILTERAANFNIALDDVSITSLTFGKE 139 (239)
Q Consensus 106 ~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~ 139 (239)
+|++.+++.+++.+.+|||+|.+|.|+++.||++
T Consensus 80 ~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 80 IINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 9999999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.52 E-value=7.5e-06 Score=76.68 Aligned_cols=105 Identities=10% Similarity=-0.019 Sum_probs=71.8
Q ss_pred cccccCceeEEEEEEEEEeeCC---CCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHH
Q 026375 40 TSGSRDLQMVKIGLRVLTRPVA---DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILT 116 (239)
Q Consensus 40 ~~~T~D~~~v~v~~~v~y~i~~---~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~ 116 (239)
.+-|+|...+.+.++.+|+++. .+....-.-|...++-.-+-..+.|.+|..+++.+++++..+-..|-...-=..+
T Consensus 528 ~vET~DhArL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~ 607 (861)
T 2zuo_A 528 TIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFE 607 (861)
T ss_dssp EEECTTCCEEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC
T ss_pred EEEEcCceEEEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCC
Confidence 3669999999999999999854 3333333333543333446678899999999999999999776665332211101
Q ss_pred H------------------HHhcCCeEEEEEEeecccCCH-HHHHHH
Q 026375 117 E------------------RAANFNIALDDVSITSLTFGK-EFTSAI 144 (239)
Q Consensus 117 ~------------------~l~~~Gi~i~~v~i~~i~~p~-~~~~ai 144 (239)
+ .+..-|+.|++|.|+++.|-+ ...+++
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~L 654 (861)
T 2zuo_A 608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL 654 (861)
T ss_dssp -------------CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHH
T ss_pred cccccccccccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHH
Confidence 1 145679999999999999864 344444
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=73.90 E-value=6.1 Score=23.77 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 026375 166 QDKRSAIIRAQGEATSAQLIGQA 188 (239)
Q Consensus 166 aea~a~~~~Aegea~a~~~~a~a 188 (239)
++.++..+.++++++|.+++.++
T Consensus 19 A~~eA~~Il~eA~~eA~~Ii~eA 41 (52)
T 2kk7_A 19 AKAEANKIISEAEAEKAKILEKA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 7
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.52 E-value=53 Score=25.55 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=53.8
Q ss_pred ecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHH--HHHHHHHHHHHH
Q 026375 39 STSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQR--ETVSREIRKILT 116 (239)
Q Consensus 39 ~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R--~~i~~~i~~~l~ 116 (239)
.++.|+||..+.+-..+.-+-. . .......|+..+.+.+.+.++..++.|++..- +.+..++....+
T Consensus 107 vdVkT~DGy~lRvf~i~fT~kr-a----------~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k 175 (198)
T 3j20_A 107 FNITTKDGYKLRVMAMAIAMRR-I----------QTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAK 175 (198)
T ss_dssp EEEECTTSCEEEEEEEEEECSS-C----------CCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEEEEEEEEecc-c----------cchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhC
Confidence 4577999999988776654311 1 12223447888899999999999999999644 777777777766
Q ss_pred HHHhcCCeEEEEEE
Q 026375 117 ERAANFNIALDDVS 130 (239)
Q Consensus 117 ~~l~~~Gi~i~~v~ 130 (239)
...-=.-+.|.-+.
T Consensus 176 ~IyPl~~V~IrKvK 189 (198)
T 3j20_A 176 KIYPLRKAEIRKIK 189 (198)
T ss_dssp HHSCEEEEEEEEEE
T ss_pred cccccceEEEEEEE
Confidence 55322234444433
No 8
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=44.48 E-value=1.3e+02 Score=24.50 Aligned_cols=96 Identities=11% Similarity=0.205 Sum_probs=55.1
Q ss_pred eecccccCceeEEEEEEEEEeeCC---CCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHH
Q 026375 38 ESTSGSRDLQMVKIGLRVLTRPVA---DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKI 114 (239)
Q Consensus 38 ~~~~~T~D~~~v~v~~~v~y~i~~---~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~ 114 (239)
..++.|+||..+.|-+.+.-+-.. .....- .|........|+..+.+.+.+.++..++.|++..- +...+..+
T Consensus 127 ~vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt--~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kl--i~~~i~ke 202 (265)
T 2xzm_4 127 RVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTST--CYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNL--IGEDYTKK 202 (265)
T ss_dssp EEEEEETTTEEEEEEEEEEECCCSSCCSCSSCC--BCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH--HTTHHHHH
T ss_pred EEEEEeCCCcEEEEEEEEEEeccccccccccee--eeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHH--ccchHHHH
Confidence 345779999999887766554322 111000 01112223457888889999999999999999632 33334444
Q ss_pred HHHHHhcCCeEEEEEEeec---ccCCH
Q 026375 115 LTERAANFNIALDDVSITS---LTFGK 138 (239)
Q Consensus 115 l~~~l~~~Gi~i~~v~i~~---i~~p~ 138 (239)
+...+... +-+.+|.|+. +..|.
T Consensus 203 I~k~~k~I-yPL~~V~IrKvKvLk~Pk 228 (265)
T 2xzm_4 203 IEKETKNI-FPLQNITIRKVKVLKRPK 228 (265)
T ss_dssp HHHHHTTT-CCEEEEEEEEEEEEECCC
T ss_pred HHHHhhhc-cccceEEEEEEEEEecCc
Confidence 44444442 3344455544 44454
No 9
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=42.38 E-value=1.4e+02 Score=26.71 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=27.5
Q ss_pred CCeEEEEEEeecccCCHHHHHHHHHHHHHHHHH
Q 026375 122 FNIALDDVSITSLTFGKEFTSAIEAKQVAAQEA 154 (239)
Q Consensus 122 ~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~a 154 (239)
-|++-.-|.+.+|-.|.++.+..++...++|+.
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHh
Confidence 478888899999999999999888777777764
No 10
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=42.23 E-value=35 Score=25.91 Aligned_cols=9 Identities=22% Similarity=0.302 Sum_probs=4.0
Q ss_pred CCCEEEEcC
Q 026375 214 SANKVFLNS 222 (239)
Q Consensus 214 ~~~~i~l~~ 222 (239)
++..+++.+
T Consensus 116 ~~~~vv~~~ 124 (187)
T 3v6i_A 116 GAKALVANP 124 (187)
T ss_dssp TCCEEEECT
T ss_pred CCCeEEECH
Confidence 344455443
No 11
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=38.63 E-value=94 Score=21.33 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 026375 161 VEKAEQDKRS 170 (239)
Q Consensus 161 ~~~Aeaea~a 170 (239)
+..|++++.+
T Consensus 33 v~~AEAeA~r 42 (105)
T 3v6i_B 33 VKRAEAEAKA 42 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 12
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=37.23 E-value=1.3e+02 Score=23.53 Aligned_cols=9 Identities=0% Similarity=0.213 Sum_probs=5.6
Q ss_pred CHHHHHHHH
Q 026375 137 GKEFTSAIE 145 (239)
Q Consensus 137 p~~~~~ai~ 145 (239)
|+++.+.|+
T Consensus 10 ~~~v~~~i~ 18 (233)
T 4efa_E 10 PNQVNDELN 18 (233)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556666664
No 13
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=36.39 E-value=1e+02 Score=21.13 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHH
Q 026375 161 VEKAEQDKRSAIIRAQGEATS 181 (239)
Q Consensus 161 ~~~Aeaea~a~~~~Aegea~a 181 (239)
+..|+.++.+.+..|+++|.+
T Consensus 22 lE~Ar~eA~~~v~~AEAeA~r 42 (105)
T 3v6i_B 22 LEAAKKEAEERVKRAEAEAKA 42 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655554443
No 14
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=34.82 E-value=1.1e+02 Score=22.83 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHH-HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026375 106 TVSREIRKILTER-AANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQG 177 (239)
Q Consensus 106 ~i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~~~~~Aeaea~a~~~~Aeg 177 (239)
++.+.+...+.+. +.=..+.|.++.+.. .+-+.+.+.+++.+.++. .+..|++++++..+.|++
T Consensus 88 ~i~~~l~~~~~~~GI~v~~v~I~~i~~p~-ev~~a~~~~~~Aere~~A-------~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 88 QLQRIIDEATDPWGIKVTAVEIKDVELPA-GMQKAMARQAEAERERRA-------RITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHTGGGTEEEEEEEEEEEEEET-THHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCeEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHH
Confidence 3444444555442 223468999999865 566777777776653321 367788888887777765
No 15
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=33.93 E-value=61 Score=19.60 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=14.2
Q ss_pred HhcCCeEEEEEEeecccCCHH
Q 026375 119 AANFNIALDDVSITSLTFGKE 139 (239)
Q Consensus 119 l~~~Gi~i~~v~i~~i~~p~~ 139 (239)
...|.+.|.+|.++|+.+|..
T Consensus 32 ~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 32 ASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHCCCEEEEEEECC-----
T ss_pred cccccceecceeEEeccCCCc
Confidence 347899999999999999964
No 16
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=28.26 E-value=37 Score=27.50 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=52.6
Q ss_pred ecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHH--HHHHHHHHHHHH
Q 026375 39 STSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQR--ETVSREIRKILT 116 (239)
Q Consensus 39 ~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R--~~i~~~i~~~l~ 116 (239)
.++.|+||..+.+-+.+.-.-.+.....- .|........|+..+.+.+.+.++..++.|++..- +.|..+|....+
T Consensus 125 vdVkT~DGy~lRvf~i~fT~kr~~q~~kt--~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k 202 (255)
T 3u5c_B 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRH--SYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATK 202 (255)
T ss_dssp EEEECSSSCEEEECCEEECCCCTTCCSSC--CCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred EEEEecCCCEEEEEEEEEEcccccccccc--eechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhc
Confidence 45779999998887666543222221000 01112223457788888899999999999999644 566666655544
Q ss_pred HHHhcCCeEEEEEEeec
Q 026375 117 ERAANFNIALDDVSITS 133 (239)
Q Consensus 117 ~~l~~~Gi~i~~v~i~~ 133 (239)
.. +-+.+|.|+.
T Consensus 203 ~I-----yPL~~V~IrK 214 (255)
T 3u5c_B 203 DI-----FPLQNIHVRK 214 (255)
T ss_dssp TT-----CCCEEEECCC
T ss_pred cc-----cccceEEEEE
Confidence 33 2334555544
No 17
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=27.00 E-value=1.6e+02 Score=20.77 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=6.7
Q ss_pred HHHhhHHHHHHHHHHH
Q 026375 173 IRAQGEATSAQLIGQA 188 (239)
Q Consensus 173 ~~Aegea~a~~~~a~a 188 (239)
-+++-|.+..+..++.
T Consensus 51 yR~qkE~eFk~~e~~~ 66 (119)
T 4efa_G 51 YKIQKDKELKEFEQKN 66 (119)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444433
No 18
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=21.11 E-value=1.4e+02 Score=17.59 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 026375 162 EKAEQDKRSAIIRAQGEATSAQ 183 (239)
Q Consensus 162 ~~Aeaea~a~~~~Aegea~a~~ 183 (239)
..+++++++..+.++++.++.+
T Consensus 26 Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 26 IISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555543
Done!