Query 026376
Match_columns 239
No_of_seqs 397 out of 1512
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.2E-59 2.6E-64 380.4 20.1 202 27-233 1-224 (240)
2 COG1120 FepC ABC-type cobalami 100.0 2.2E-56 4.7E-61 375.8 21.2 202 28-232 2-226 (258)
3 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.3E-56 9.3E-61 372.4 22.5 204 27-234 3-227 (254)
4 COG1124 DppF ABC-type dipeptid 100.0 9.4E-55 2E-59 357.9 21.3 204 27-231 2-228 (252)
5 COG3638 ABC-type phosphate/pho 100.0 9.8E-55 2.1E-59 355.8 18.9 205 27-235 2-238 (258)
6 COG1125 OpuBA ABC-type proline 100.0 1.3E-54 2.8E-59 358.3 19.0 201 28-232 1-223 (309)
7 COG1116 TauB ABC-type nitrate/ 100.0 3.9E-54 8.5E-59 356.7 21.6 190 27-220 2-207 (248)
8 COG1127 Ttg2A ABC-type transpo 100.0 1.7E-53 3.6E-58 349.4 22.0 205 26-234 6-235 (263)
9 COG1135 AbcC ABC-type metal io 100.0 8.1E-54 1.8E-58 362.5 20.5 201 28-232 1-229 (339)
10 COG1122 CbiO ABC-type cobalt t 100.0 1.8E-52 3.9E-57 350.7 23.4 206 27-235 2-229 (235)
11 COG1136 SalX ABC-type antimicr 100.0 2.3E-52 5E-57 345.1 22.8 193 28-223 1-221 (226)
12 COG1131 CcmA ABC-type multidru 100.0 1.2E-51 2.6E-56 357.9 24.0 206 28-235 4-227 (293)
13 COG3842 PotA ABC-type spermidi 100.0 3.4E-52 7.4E-57 364.3 20.3 205 26-235 3-227 (352)
14 PRK13537 nodulation ABC transp 100.0 5E-51 1.1E-55 356.4 26.1 205 26-235 5-228 (306)
15 COG1118 CysA ABC-type sulfate/ 100.0 7.2E-52 1.6E-56 350.0 19.2 204 27-235 1-228 (345)
16 COG3839 MalK ABC-type sugar tr 100.0 2E-51 4.4E-56 357.7 22.2 202 28-234 3-223 (338)
17 PRK13536 nodulation factor exp 100.0 1.7E-50 3.7E-55 357.2 26.5 205 26-235 39-262 (340)
18 TIGR02314 ABC_MetN D-methionin 100.0 1.4E-50 2.9E-55 357.7 25.3 202 28-233 1-229 (343)
19 COG2884 FtsE Predicted ATPase 100.0 4.3E-51 9.3E-56 324.2 19.4 195 28-225 1-218 (223)
20 PLN03073 ABC transporter F fam 100.0 3.5E-50 7.6E-55 383.9 29.2 213 25-237 505-717 (718)
21 TIGR01288 nodI ATP-binding ABC 100.0 2.6E-50 5.6E-55 351.6 25.4 204 26-234 2-224 (303)
22 cd03261 ABC_Org_Solvent_Resist 100.0 2.2E-50 4.7E-55 339.9 23.9 200 29-233 1-225 (235)
23 TIGR00960 3a0501s02 Type II (G 100.0 2.2E-50 4.8E-55 335.7 23.3 192 28-222 1-216 (216)
24 PRK11650 ugpC glycerol-3-phosp 100.0 3.1E-50 6.8E-55 357.5 25.5 203 28-234 3-224 (356)
25 PRK10636 putative ABC transpor 100.0 3.6E-50 7.7E-55 381.4 27.1 210 25-235 309-518 (638)
26 cd03226 ABC_cobalt_CbiO_domain 100.0 3.3E-50 7.2E-55 332.2 22.2 192 30-223 1-205 (205)
27 PRK11432 fbpC ferric transport 100.0 7E-50 1.5E-54 354.5 25.5 204 26-234 4-226 (351)
28 cd03265 ABC_DrrA DrrA is the A 100.0 4.1E-50 8.9E-55 335.1 22.5 199 29-232 1-219 (220)
29 cd03296 ABC_CysA_sulfate_impor 100.0 8.1E-50 1.8E-54 337.3 24.3 201 28-233 2-225 (239)
30 TIGR03265 PhnT2 putative 2-ami 100.0 8.2E-50 1.8E-54 354.5 25.3 203 27-234 3-224 (353)
31 TIGR03522 GldA_ABC_ATP gliding 100.0 9.8E-50 2.1E-54 347.6 25.4 203 28-235 2-222 (301)
32 cd03259 ABC_Carb_Solutes_like 100.0 3.8E-50 8.3E-55 333.6 21.5 191 29-223 1-210 (213)
33 PRK11247 ssuB aliphatic sulfon 100.0 1.9E-49 4.1E-54 338.5 25.5 198 26-228 10-217 (257)
34 cd03256 ABC_PhnC_transporter A 100.0 1.3E-49 2.8E-54 336.1 23.3 202 29-234 1-234 (241)
35 PRK11153 metN DL-methionine tr 100.0 2E-49 4.3E-54 351.2 25.4 202 28-233 1-229 (343)
36 PRK15079 oligopeptide ABC tran 100.0 1.6E-49 3.5E-54 349.9 24.6 208 25-233 5-250 (331)
37 PRK09536 btuD corrinoid ABC tr 100.0 1.1E-49 2.3E-54 358.0 23.8 201 27-232 2-226 (402)
38 PRK11308 dppF dipeptide transp 100.0 1.7E-49 3.7E-54 349.3 24.4 207 26-233 3-243 (327)
39 PRK13647 cbiO cobalt transport 100.0 1.5E-49 3.3E-54 342.2 23.6 203 27-232 3-225 (274)
40 PRK13643 cbiO cobalt transport 100.0 1.8E-49 3.9E-54 344.0 24.0 205 28-234 1-233 (288)
41 cd03219 ABC_Mj1267_LivG_branch 100.0 1.6E-49 3.4E-54 334.7 22.9 201 29-234 1-232 (236)
42 PRK09452 potA putrescine/sperm 100.0 2.9E-49 6.3E-54 353.0 25.8 205 25-234 11-234 (375)
43 PRK13637 cbiO cobalt transport 100.0 2.9E-49 6.3E-54 342.6 24.9 205 28-234 2-234 (287)
44 TIGR02315 ABC_phnC phosphonate 100.0 1.2E-49 2.5E-54 336.9 21.9 202 28-233 1-234 (243)
45 PRK13631 cbiO cobalt transport 100.0 4.2E-49 9.1E-54 345.9 26.1 209 23-233 16-264 (320)
46 PRK13651 cobalt transporter AT 100.0 2.8E-49 6.1E-54 345.0 24.7 204 28-233 2-253 (305)
47 PRK11000 maltose/maltodextrin 100.0 2.9E-49 6.3E-54 353.1 25.4 202 28-234 3-223 (369)
48 PRK11701 phnK phosphonate C-P 100.0 3.6E-49 7.8E-54 337.0 24.8 205 27-233 5-240 (258)
49 cd03268 ABC_BcrA_bacitracin_re 100.0 2.2E-49 4.7E-54 328.0 22.7 191 29-223 1-205 (208)
50 PRK13634 cbiO cobalt transport 100.0 2.4E-49 5.1E-54 343.6 23.9 204 28-233 2-234 (290)
51 TIGR03258 PhnT 2-aminoethylpho 100.0 3.3E-49 7.3E-54 351.3 25.2 202 28-234 5-228 (362)
52 COG4555 NatA ABC-type Na+ tran 100.0 1.9E-50 4.2E-55 323.3 15.3 207 28-236 1-224 (245)
53 PRK11831 putative ABC transpor 100.0 4.2E-49 9.1E-54 338.6 24.7 202 27-233 6-232 (269)
54 COG0488 Uup ATPase components 100.0 1.1E-49 2.5E-54 367.0 22.6 206 27-237 2-243 (530)
55 cd03263 ABC_subfamily_A The AB 100.0 3E-49 6.4E-54 329.7 22.9 200 29-232 1-219 (220)
56 PRK13641 cbiO cobalt transport 100.0 4E-49 8.7E-54 341.7 24.6 204 28-233 2-233 (287)
57 PRK14250 phosphate ABC transpo 100.0 3.9E-49 8.5E-54 333.7 23.8 201 28-233 3-220 (241)
58 PRK10851 sulfate/thiosulfate t 100.0 3E-49 6.6E-54 350.8 24.0 202 28-234 2-226 (353)
59 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.4E-49 7.5E-54 329.5 22.9 196 29-228 1-217 (220)
60 cd03258 ABC_MetN_methionine_tr 100.0 4.9E-49 1.1E-53 331.2 23.9 202 28-233 1-229 (233)
61 COG0488 Uup ATPase components 100.0 4.8E-49 1E-53 362.8 26.0 214 23-238 316-529 (530)
62 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.9E-49 6.2E-54 329.4 22.2 190 29-222 1-218 (218)
63 TIGR02673 FtsE cell division A 100.0 3.2E-49 6.9E-54 328.2 22.3 191 28-221 1-214 (214)
64 cd03260 ABC_PstB_phosphate_tra 100.0 3.7E-49 8E-54 330.7 22.5 197 29-231 1-226 (227)
65 PRK15112 antimicrobial peptide 100.0 4.1E-49 8.8E-54 338.4 23.3 207 27-234 3-239 (267)
66 TIGR02769 nickel_nikE nickel i 100.0 5.6E-49 1.2E-53 337.1 24.1 205 28-233 2-239 (265)
67 COG0411 LivG ABC-type branched 100.0 4.2E-50 9.2E-55 330.5 16.3 203 27-234 3-239 (250)
68 PRK09544 znuC high-affinity zi 100.0 6.8E-49 1.5E-53 334.1 24.3 202 27-233 3-208 (251)
69 PRK13646 cbiO cobalt transport 100.0 5.3E-49 1.2E-53 340.8 24.0 204 28-233 2-234 (286)
70 cd03235 ABC_Metallic_Cations A 100.0 1.7E-49 3.6E-54 329.8 19.5 191 30-222 1-210 (213)
71 cd03301 ABC_MalK_N The N-termi 100.0 8.7E-49 1.9E-53 325.4 23.6 192 29-224 1-211 (213)
72 TIGR02323 CP_lyasePhnK phospho 100.0 1E-48 2.3E-53 333.1 24.7 205 27-233 2-237 (253)
73 cd03266 ABC_NatA_sodium_export 100.0 6.7E-49 1.4E-53 327.2 22.8 193 28-223 1-215 (218)
74 PRK15064 ABC transporter ATP-b 100.0 1.4E-48 3.1E-53 364.1 27.5 210 26-236 317-527 (530)
75 cd03218 ABC_YhbG The ABC trans 100.0 6.8E-49 1.5E-53 330.0 22.9 200 29-233 1-221 (232)
76 PRK10619 histidine/lysine/argi 100.0 8.4E-49 1.8E-53 334.6 23.8 203 27-233 4-240 (257)
77 PRK15093 antimicrobial peptide 100.0 7.9E-49 1.7E-53 345.8 24.2 206 27-233 2-247 (330)
78 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.3E-48 2.9E-53 329.3 24.3 201 28-234 1-221 (236)
79 PRK11607 potG putrescine trans 100.0 1.6E-48 3.5E-53 348.6 26.2 204 26-234 17-239 (377)
80 PRK10908 cell division protein 100.0 1.1E-48 2.4E-53 326.9 23.6 193 28-223 1-216 (222)
81 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.1E-48 2.3E-53 331.0 23.7 202 29-233 1-224 (242)
82 PRK13638 cbiO cobalt transport 100.0 8E-49 1.7E-53 337.2 23.2 202 28-233 1-224 (271)
83 TIGR01188 drrA daunorubicin re 100.0 6.3E-49 1.4E-53 342.7 22.7 195 36-235 1-214 (302)
84 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-48 2.3E-53 330.6 23.3 201 28-233 1-224 (240)
85 PRK11264 putative amino-acid A 100.0 1.2E-48 2.7E-53 332.0 23.8 201 28-233 3-232 (250)
86 cd03224 ABC_TM1139_LivF_branch 100.0 6.5E-49 1.4E-53 328.0 21.7 200 29-233 1-220 (222)
87 PRK13636 cbiO cobalt transport 100.0 1.7E-48 3.6E-53 337.2 25.0 205 27-234 4-231 (283)
88 cd03269 ABC_putative_ATPase Th 100.0 1.2E-48 2.5E-53 324.1 23.0 191 29-223 1-207 (210)
89 cd03257 ABC_NikE_OppD_transpor 100.0 1.9E-48 4.1E-53 326.3 24.4 196 28-223 1-225 (228)
90 PRK11147 ABC transporter ATPas 100.0 1.6E-48 3.5E-53 370.3 26.9 208 25-234 316-528 (635)
91 PRK11022 dppD dipeptide transp 100.0 1.2E-48 2.7E-53 343.9 24.3 205 28-233 3-242 (326)
92 PRK10636 putative ABC transpor 100.0 1.6E-48 3.6E-53 370.0 26.5 204 28-235 1-237 (638)
93 TIGR03411 urea_trans_UrtD urea 100.0 2.5E-48 5.4E-53 328.7 24.8 202 27-233 1-230 (242)
94 cd03264 ABC_drug_resistance_li 100.0 9.8E-49 2.1E-53 324.7 21.8 190 29-223 1-208 (211)
95 PRK13652 cbiO cobalt transport 100.0 2.4E-48 5.2E-53 335.2 24.7 203 28-233 3-226 (277)
96 PRK11629 lolD lipoprotein tran 100.0 3.6E-48 7.7E-53 326.1 25.1 194 26-223 3-224 (233)
97 PRK11248 tauB taurine transpor 100.0 2.3E-48 4.9E-53 331.7 24.0 193 28-224 1-211 (255)
98 PRK13649 cbiO cobalt transport 100.0 2.2E-48 4.7E-53 335.9 24.2 204 28-233 2-233 (280)
99 PRK15064 ABC transporter ATP-b 100.0 2E-48 4.3E-53 363.1 25.6 205 28-235 1-243 (530)
100 PRK11300 livG leucine/isoleuci 100.0 2.5E-48 5.4E-53 331.1 23.9 202 27-233 4-242 (255)
101 PRK13548 hmuV hemin importer A 100.0 3.3E-48 7.1E-53 331.2 24.7 201 28-233 2-229 (258)
102 PRK11231 fecE iron-dicitrate t 100.0 2.1E-48 4.5E-53 331.8 23.3 201 28-233 2-226 (255)
103 PRK10575 iron-hydroxamate tran 100.0 1.6E-48 3.4E-53 334.3 22.6 203 26-233 9-236 (265)
104 cd03292 ABC_FtsE_transporter F 100.0 2.1E-48 4.7E-53 323.1 22.7 191 29-222 1-214 (214)
105 PRK11124 artP arginine transpo 100.0 3.2E-48 7E-53 328.1 24.2 201 28-233 2-229 (242)
106 TIGR02211 LolD_lipo_ex lipopro 100.0 3.1E-48 6.8E-53 323.8 23.6 192 28-223 1-220 (221)
107 PRK10895 lipopolysaccharide AB 100.0 1.7E-48 3.8E-53 329.5 22.2 202 28-234 3-226 (241)
108 TIGR03410 urea_trans_UrtE urea 100.0 1.7E-48 3.7E-53 327.3 21.8 201 29-233 1-220 (230)
109 PRK11819 putative ABC transpor 100.0 3.9E-48 8.5E-53 362.9 26.5 205 26-234 4-250 (556)
110 PRK09473 oppD oligopeptide tra 100.0 3.8E-48 8.3E-53 341.2 24.7 208 25-233 9-250 (330)
111 TIGR01978 sufC FeS assembly AT 100.0 3.2E-48 7E-53 327.9 23.0 202 29-234 1-234 (243)
112 PRK13639 cbiO cobalt transport 100.0 6.5E-48 1.4E-52 332.2 25.2 203 28-233 1-225 (275)
113 PRK10584 putative ABC transpor 100.0 4.9E-48 1.1E-52 324.1 23.7 194 26-223 4-225 (228)
114 TIGR00972 3a0107s01c2 phosphat 100.0 5E-48 1.1E-52 327.9 24.0 201 28-233 1-231 (247)
115 TIGR03740 galliderm_ABC gallid 100.0 4.1E-48 9E-53 323.6 22.9 198 29-231 1-210 (223)
116 PRK10070 glycine betaine trans 100.0 8.9E-48 1.9E-52 345.4 26.4 187 43-233 42-253 (400)
117 PRK13650 cbiO cobalt transport 100.0 6.8E-48 1.5E-52 332.7 24.6 203 27-233 3-228 (279)
118 PRK14242 phosphate transporter 100.0 9.2E-48 2E-52 327.3 25.1 203 26-233 4-236 (253)
119 COG1123 ATPase components of v 100.0 2.7E-48 5.9E-53 353.3 23.2 206 25-231 277-516 (539)
120 COG1137 YhbG ABC-type (unclass 100.0 7.4E-50 1.6E-54 319.5 11.3 203 27-234 3-228 (243)
121 PRK13645 cbiO cobalt transport 100.0 8.1E-48 1.8E-52 333.8 25.0 204 28-233 6-239 (289)
122 cd03225 ABC_cobalt_CbiO_domain 100.0 2.9E-48 6.4E-53 321.8 21.1 190 30-221 1-211 (211)
123 PRK10253 iron-enterobactin tra 100.0 4.8E-48 1E-52 331.4 23.0 203 26-233 5-232 (265)
124 PRK13644 cbiO cobalt transport 100.0 9.4E-48 2E-52 331.1 24.6 202 28-233 1-223 (274)
125 PRK14247 phosphate ABC transpo 100.0 8.5E-48 1.8E-52 327.0 23.9 202 28-233 3-233 (250)
126 PRK10418 nikD nickel transport 100.0 2.1E-47 4.5E-52 325.5 26.2 204 28-234 4-230 (254)
127 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.6E-48 1E-52 332.2 22.2 200 30-234 26-250 (269)
128 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-47 2.7E-52 359.2 26.9 211 25-237 319-534 (552)
129 TIGR03005 ectoine_ehuA ectoine 100.0 5.9E-48 1.3E-52 328.4 22.4 201 29-234 1-236 (252)
130 PRK15439 autoinducer 2 ABC tra 100.0 6.9E-48 1.5E-52 357.9 24.8 203 26-233 9-228 (510)
131 PRK14248 phosphate ABC transpo 100.0 1.4E-47 2.9E-52 329.0 24.7 205 24-233 17-251 (268)
132 cd03262 ABC_HisP_GlnQ_permease 100.0 3.6E-48 7.9E-53 321.5 20.5 190 29-222 1-213 (213)
133 PRK11819 putative ABC transpor 100.0 1.8E-47 3.8E-52 358.4 27.6 211 25-237 321-536 (556)
134 TIGR01186 proV glycine betaine 100.0 6.2E-48 1.3E-52 342.7 23.2 194 36-234 1-219 (363)
135 PRK09984 phosphonate/organopho 100.0 7.6E-48 1.7E-52 329.5 23.0 201 27-232 3-240 (262)
136 PRK14273 phosphate ABC transpo 100.0 1.9E-47 4.2E-52 325.6 25.2 203 26-233 5-237 (254)
137 PRK11614 livF leucine/isoleuci 100.0 7.3E-48 1.6E-52 324.9 22.3 202 27-233 4-225 (237)
138 PRK11144 modC molybdate transp 100.0 1.1E-47 2.4E-52 341.2 24.6 199 28-234 1-218 (352)
139 PRK15056 manganese/iron transp 100.0 1.3E-47 2.7E-52 330.0 24.0 202 28-232 6-228 (272)
140 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-47 2.3E-52 327.5 23.4 200 29-233 2-225 (256)
141 PRK14268 phosphate ABC transpo 100.0 2.7E-47 5.9E-52 325.4 25.7 203 26-233 10-241 (258)
142 PRK10771 thiQ thiamine transpo 100.0 1.3E-47 2.7E-52 322.6 22.8 200 28-234 1-219 (232)
143 PRK10419 nikE nickel transport 100.0 1.6E-47 3.4E-52 328.7 23.8 204 28-232 3-239 (268)
144 PRK13635 cbiO cobalt transport 100.0 1.4E-47 3.1E-52 330.7 23.4 203 27-233 4-228 (279)
145 PRK13633 cobalt transporter AT 100.0 1.5E-47 3.2E-52 330.8 23.3 204 27-234 3-233 (280)
146 PRK14267 phosphate ABC transpo 100.0 2.9E-47 6.3E-52 324.2 24.0 203 27-233 3-236 (253)
147 COG2274 SunT ABC-type bacterio 100.0 6.3E-48 1.4E-52 365.7 22.0 204 27-235 470-697 (709)
148 COG1117 PstB ABC-type phosphat 100.0 2E-48 4.3E-53 314.3 15.8 202 26-232 5-235 (253)
149 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-47 4.9E-52 357.5 25.4 205 27-235 3-249 (552)
150 PRK10744 pstB phosphate transp 100.0 3.4E-47 7.3E-52 325.2 24.1 203 26-233 11-243 (260)
151 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.1E-47 4.6E-52 316.7 22.1 189 29-223 1-208 (211)
152 PRK10261 glutathione transport 100.0 1.8E-47 3.8E-52 362.4 24.5 206 26-232 311-551 (623)
153 PRK14235 phosphate transporter 100.0 6.9E-47 1.5E-51 324.5 25.9 204 25-233 16-250 (267)
154 PRK11147 ABC transporter ATPas 100.0 3.7E-47 8E-52 361.0 26.3 203 28-236 3-245 (635)
155 PRK13632 cbiO cobalt transport 100.0 4.5E-47 9.7E-52 326.4 24.2 204 26-233 5-230 (271)
156 PRK10247 putative ABC transpor 100.0 2E-47 4.2E-52 320.2 21.3 198 26-230 5-223 (225)
157 COG0444 DppD ABC-type dipeptid 100.0 2.1E-47 4.6E-52 326.5 21.6 204 28-232 1-241 (316)
158 PRK14254 phosphate ABC transpo 100.0 1.3E-46 2.8E-51 325.6 26.4 205 24-233 35-268 (285)
159 COG3840 ThiQ ABC-type thiamine 100.0 6.7E-48 1.5E-52 304.2 16.7 200 28-234 1-219 (231)
160 cd03252 ABCC_Hemolysin The ABC 100.0 6.1E-47 1.3E-51 319.2 23.8 200 29-234 1-225 (237)
161 cd03254 ABCC_Glucan_exporter_l 100.0 5.6E-47 1.2E-51 317.8 23.4 203 28-235 2-227 (229)
162 PRK14274 phosphate ABC transpo 100.0 1E-46 2.2E-51 322.1 25.3 205 25-234 9-243 (259)
163 PRK14269 phosphate ABC transpo 100.0 6.9E-47 1.5E-51 320.8 24.0 201 28-233 2-229 (246)
164 PRK13648 cbiO cobalt transport 100.0 9.6E-47 2.1E-51 324.0 25.1 204 26-233 5-230 (269)
165 PRK14245 phosphate ABC transpo 100.0 7.6E-47 1.6E-51 321.2 23.9 202 27-233 2-233 (250)
166 PRK14259 phosphate ABC transpo 100.0 1.4E-46 3E-51 323.0 25.5 205 24-233 9-252 (269)
167 PRK14270 phosphate ABC transpo 100.0 1.2E-46 2.7E-51 320.1 24.9 203 26-233 2-234 (251)
168 COG0410 LivF ABC-type branched 100.0 3.8E-47 8.2E-52 310.8 20.5 205 27-235 2-227 (237)
169 cd03300 ABC_PotA_N PotA is an 100.0 1.4E-46 3E-51 316.3 24.6 200 29-233 1-219 (232)
170 PRK14241 phosphate transporter 100.0 1.5E-46 3.2E-51 320.9 25.0 202 28-233 4-241 (258)
171 COG4152 ABC-type uncharacteriz 100.0 9.1E-48 2E-52 315.9 16.5 204 27-236 1-221 (300)
172 PRK10261 glutathione transport 100.0 4.7E-47 1E-51 359.5 24.0 208 25-233 9-257 (623)
173 PRK09700 D-allose transporter 100.0 2.5E-47 5.5E-52 354.2 21.7 201 27-232 4-232 (510)
174 PRK14262 phosphate ABC transpo 100.0 1.7E-46 3.6E-51 319.1 24.8 202 28-234 3-234 (250)
175 PRK10762 D-ribose transporter 100.0 2.3E-47 5E-52 353.8 21.3 201 27-232 3-228 (501)
176 PRK13543 cytochrome c biogenes 100.0 1.1E-46 2.5E-51 313.3 23.3 191 25-219 8-212 (214)
177 TIGR03269 met_CoM_red_A2 methy 100.0 6.2E-47 1.3E-51 352.4 24.2 209 25-236 276-519 (520)
178 PRK15134 microcin C ABC transp 100.0 6.1E-47 1.3E-51 353.1 24.0 206 26-232 3-244 (529)
179 PRK14240 phosphate transporter 100.0 1.9E-46 4.2E-51 318.6 25.0 201 28-233 3-233 (250)
180 PRK13640 cbiO cobalt transport 100.0 1.5E-46 3.3E-51 324.8 24.7 204 26-233 3-231 (282)
181 PRK14239 phosphate transporter 100.0 2.3E-46 4.9E-51 318.5 25.4 202 27-233 4-235 (252)
182 PRK14238 phosphate transporter 100.0 1.9E-46 4.2E-51 322.4 25.0 205 24-233 20-254 (271)
183 PRK14256 phosphate ABC transpo 100.0 2.7E-46 5.7E-51 318.2 25.6 202 28-233 4-235 (252)
184 cd03245 ABCC_bacteriocin_expor 100.0 1.3E-46 2.8E-51 313.8 23.1 190 29-223 3-217 (220)
185 PRK09580 sufC cysteine desulfu 100.0 2.1E-46 4.7E-51 317.8 24.6 201 28-232 1-233 (248)
186 PRK14251 phosphate ABC transpo 100.0 1.8E-46 4E-51 319.0 23.9 202 27-233 3-234 (251)
187 PRK14272 phosphate ABC transpo 100.0 2E-46 4.3E-51 318.8 23.9 202 28-233 4-235 (252)
188 cd03297 ABC_ModC_molybdenum_tr 100.0 9.1E-47 2E-51 313.7 21.3 187 29-223 2-211 (214)
189 PRK13549 xylose transporter AT 100.0 7.2E-47 1.6E-51 350.8 23.0 201 27-232 4-230 (506)
190 TIGR01277 thiQ thiamine ABC tr 100.0 2.1E-46 4.5E-51 311.3 23.3 193 29-228 1-212 (213)
191 CHL00131 ycf16 sulfate ABC tra 100.0 2.8E-46 6E-51 317.9 24.4 201 26-230 5-237 (252)
192 PRK13642 cbiO cobalt transport 100.0 3.1E-46 6.8E-51 322.1 25.0 202 28-233 4-228 (277)
193 PRK14275 phosphate ABC transpo 100.0 3.5E-46 7.5E-51 323.2 25.4 204 25-233 36-269 (286)
194 PRK13547 hmuV hemin importer A 100.0 1.5E-46 3.3E-51 323.1 22.8 200 28-232 1-242 (272)
195 PRK14237 phosphate transporter 100.0 4.5E-46 9.9E-51 319.5 25.7 204 25-233 17-250 (267)
196 TIGR02142 modC_ABC molybdenum 100.0 9.2E-47 2E-51 335.6 21.9 195 33-234 4-221 (354)
197 PRK15134 microcin C ABC transp 100.0 9E-47 2E-51 351.9 22.6 207 25-233 272-514 (529)
198 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.6E-46 5.6E-51 315.6 23.2 200 29-234 1-226 (238)
199 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.1E-46 2.3E-51 362.3 23.5 202 28-234 477-700 (710)
200 PRK14236 phosphate transporter 100.0 6.3E-46 1.4E-50 319.4 25.8 204 25-233 22-255 (272)
201 PRK10938 putative molybdenum t 100.0 8.9E-47 1.9E-51 349.0 21.9 200 28-232 3-222 (490)
202 PRK14265 phosphate ABC transpo 100.0 5.2E-46 1.1E-50 320.2 25.1 205 24-233 16-257 (274)
203 cd03299 ABC_ModC_like Archeal 100.0 4.7E-46 1E-50 313.7 24.3 199 29-233 1-218 (235)
204 PRK14253 phosphate ABC transpo 100.0 4.5E-46 9.8E-51 316.2 24.4 201 28-233 3-232 (249)
205 PRK13538 cytochrome c biogenes 100.0 1.8E-46 3.8E-51 309.9 21.3 186 28-217 1-202 (204)
206 cd03251 ABCC_MsbA MsbA is an e 100.0 4.7E-46 1E-50 313.1 24.2 201 29-235 1-226 (234)
207 PRK14271 phosphate ABC transpo 100.0 5.8E-46 1.3E-50 320.2 25.1 205 25-234 18-251 (276)
208 TIGR03415 ABC_choXWV_ATP choli 100.0 1.4E-46 3E-51 335.7 21.9 197 32-233 28-253 (382)
209 PRK14249 phosphate ABC transpo 100.0 7.7E-46 1.7E-50 315.2 25.5 202 27-233 3-234 (251)
210 PRK14246 phosphate ABC transpo 100.0 4.4E-46 9.6E-51 317.9 23.9 205 26-234 8-241 (257)
211 PRK13549 xylose transporter AT 100.0 8.8E-47 1.9E-51 350.3 21.2 207 25-232 256-492 (506)
212 TIGR00968 3a0106s01 sulfate AB 100.0 5.2E-46 1.1E-50 313.9 23.9 200 29-233 1-219 (237)
213 cd03253 ABCC_ATM1_transporter 100.0 5E-46 1.1E-50 313.4 23.8 201 29-234 1-224 (236)
214 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.4E-46 5.2E-51 358.6 24.5 201 28-234 451-673 (686)
215 TIGR02324 CP_lyasePhnL phospho 100.0 3.5E-46 7.5E-51 312.1 22.3 189 28-218 1-223 (224)
216 PRK14255 phosphate ABC transpo 100.0 9.9E-46 2.1E-50 314.6 25.3 202 26-232 3-234 (252)
217 PRK14244 phosphate ABC transpo 100.0 6.1E-46 1.3E-50 315.8 23.9 201 29-234 6-237 (251)
218 PRK14243 phosphate transporter 100.0 7E-46 1.5E-50 317.8 24.1 203 26-233 8-247 (264)
219 PRK11174 cysteine/glutathione 100.0 3.2E-46 6.9E-51 352.2 24.2 201 28-234 349-572 (588)
220 TIGR03269 met_CoM_red_A2 methy 100.0 4.2E-46 9E-51 346.8 24.6 203 29-235 1-259 (520)
221 cd03214 ABC_Iron-Siderophores_ 100.0 1.3E-46 2.7E-51 305.1 18.1 173 30-223 1-177 (180)
222 cd03223 ABCD_peroxisomal_ALDP 100.0 4.7E-46 1E-50 298.1 21.2 164 29-221 1-164 (166)
223 COG4988 CydD ABC-type transpor 100.0 2.5E-46 5.4E-51 339.7 22.0 201 28-233 320-542 (559)
224 COG1123 ATPase components of v 100.0 3.8E-46 8.2E-51 339.3 23.2 207 27-234 4-244 (539)
225 cd03267 ABC_NatA_like Similar 100.0 5E-46 1.1E-50 313.8 22.1 185 36-223 29-233 (236)
226 TIGR02633 xylG D-xylose ABC tr 100.0 3.7E-46 8E-51 345.6 23.3 200 28-231 1-227 (500)
227 PRK14258 phosphate ABC transpo 100.0 1.3E-45 2.8E-50 315.7 24.8 202 28-234 7-245 (261)
228 cd03231 ABC_CcmA_heme_exporter 100.0 8E-46 1.7E-50 305.4 22.0 185 29-217 1-198 (201)
229 cd03244 ABCC_MRP_domain2 Domai 100.0 1.2E-45 2.6E-50 308.2 22.9 194 29-228 3-220 (221)
230 TIGR02982 heterocyst_DevA ABC 100.0 1.3E-45 2.9E-50 308.0 22.9 190 29-222 2-219 (220)
231 TIGR03608 L_ocin_972_ABC putat 100.0 6.3E-46 1.4E-50 306.6 20.7 182 31-217 1-206 (206)
232 PRK14261 phosphate ABC transpo 100.0 2.1E-45 4.6E-50 312.8 24.4 203 26-233 4-236 (253)
233 COG4598 HisP ABC-type histidin 100.0 2.4E-47 5.2E-52 300.9 11.5 202 27-233 5-240 (256)
234 TIGR02770 nickel_nikD nickel i 100.0 9E-46 1.9E-50 311.0 21.7 189 44-233 1-214 (230)
235 PRK11288 araG L-arabinose tran 100.0 9.6E-46 2.1E-50 343.0 23.6 193 27-223 3-219 (501)
236 PRK13539 cytochrome c biogenes 100.0 1.1E-45 2.5E-50 305.8 21.4 186 28-219 2-200 (207)
237 COG4559 ABC-type hemin transpo 100.0 2.9E-46 6.3E-51 301.4 17.2 203 28-233 1-229 (259)
238 PRK14260 phosphate ABC transpo 100.0 2.3E-45 4.9E-50 313.8 23.7 202 27-233 6-242 (259)
239 PRK11160 cysteine/glutathione 100.0 1.2E-45 2.6E-50 347.3 24.0 203 27-234 337-562 (574)
240 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.6E-45 3.6E-50 288.4 20.4 144 29-221 1-144 (144)
241 PRK14252 phosphate ABC transpo 100.0 6.6E-45 1.4E-49 311.9 26.0 204 25-233 13-248 (265)
242 PRK09700 D-allose transporter 100.0 7.1E-46 1.5E-50 344.5 21.3 197 25-224 262-489 (510)
243 TIGR03375 type_I_sec_LssB type 100.0 1.5E-45 3.3E-50 353.5 24.2 205 28-237 463-691 (694)
244 PRK14264 phosphate ABC transpo 100.0 4.9E-45 1.1E-49 318.6 25.2 204 25-233 42-288 (305)
245 TIGR00958 3a01208 Conjugate Tr 100.0 1.9E-45 4.1E-50 353.3 24.7 204 27-235 477-703 (711)
246 TIGR02633 xylG D-xylose ABC tr 100.0 5.6E-46 1.2E-50 344.5 20.2 206 26-232 255-490 (500)
247 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.1E-45 1.8E-49 300.5 24.8 188 27-228 5-206 (207)
248 COG4987 CydC ABC-type transpor 100.0 3.5E-46 7.5E-51 334.8 17.8 202 28-234 336-561 (573)
249 cd03248 ABCC_TAP TAP, the Tran 100.0 2.7E-45 5.8E-50 307.1 22.0 192 26-222 9-226 (226)
250 PRK11176 lipid transporter ATP 100.0 1.6E-45 3.4E-50 347.0 23.0 202 28-234 341-567 (582)
251 cd03215 ABC_Carb_Monos_II This 100.0 2E-45 4.4E-50 298.5 20.5 165 26-222 2-182 (182)
252 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.4E-45 9.6E-50 314.1 23.8 198 29-234 3-225 (275)
253 TIGR01193 bacteriocin_ABC ABC- 100.0 1.5E-45 3.2E-50 354.2 23.2 202 28-234 473-697 (708)
254 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.9E-45 8.4E-50 306.2 22.3 190 29-223 23-221 (224)
255 PRK14257 phosphate ABC transpo 100.0 1E-44 2.2E-49 319.2 26.1 205 25-233 77-312 (329)
256 PRK10982 galactose/methyl gala 100.0 8.5E-46 1.8E-50 342.5 20.1 197 31-232 1-221 (491)
257 cd03216 ABC_Carb_Monos_I This 100.0 3.3E-45 7.2E-50 292.4 20.8 158 29-223 1-161 (163)
258 cd03250 ABCC_MRP_domain1 Domai 100.0 5.8E-45 1.3E-49 300.7 22.5 186 29-221 1-204 (204)
259 COG4175 ProV ABC-type proline/ 100.0 9.9E-46 2.1E-50 313.6 18.2 202 28-233 4-253 (386)
260 cd03234 ABCG_White The White s 100.0 3.9E-45 8.6E-50 306.3 21.7 193 28-223 3-223 (226)
261 cd03230 ABC_DR_subfamily_A Thi 100.0 5.5E-45 1.2E-49 293.7 21.2 160 29-222 1-173 (173)
262 TIGR01184 ntrCD nitrate transp 100.0 1.6E-45 3.4E-50 309.6 18.7 181 45-229 1-199 (230)
263 PRK14263 phosphate ABC transpo 100.0 1.4E-44 3.1E-49 309.3 24.9 204 26-234 6-245 (261)
264 PRK10790 putative multidrug tr 100.0 5.6E-45 1.2E-49 344.0 24.1 200 28-233 340-562 (592)
265 PRK14266 phosphate ABC transpo 100.0 9E-45 1.9E-49 308.4 22.9 201 28-233 3-233 (250)
266 COG4604 CeuD ABC-type enteroch 100.0 5.6E-47 1.2E-51 302.5 8.7 202 28-233 1-224 (252)
267 COG4181 Predicted ABC-type tra 100.0 3.9E-45 8.4E-50 286.1 18.2 192 28-223 6-225 (228)
268 cd03247 ABCC_cytochrome_bd The 100.0 1.1E-44 2.3E-49 293.3 21.4 162 29-223 1-175 (178)
269 PRK13545 tagH teichoic acids e 100.0 2.3E-44 4.9E-49 328.7 26.2 203 26-234 19-232 (549)
270 TIGR01189 ccmA heme ABC export 100.0 6.3E-45 1.4E-49 299.2 19.9 182 29-216 1-197 (198)
271 cd03246 ABCC_Protease_Secretio 100.0 9.5E-45 2.1E-49 292.3 20.2 158 29-222 1-173 (173)
272 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.4E-44 3E-49 306.7 22.0 193 36-232 1-205 (246)
273 PRK11288 araG L-arabinose tran 100.0 3.7E-45 8E-50 339.1 20.1 202 26-233 255-484 (501)
274 PRK13546 teichoic acids export 100.0 5.2E-44 1.1E-48 306.1 25.6 187 43-235 38-233 (264)
275 PRK13657 cyclic beta-1,2-gluca 100.0 1.2E-44 2.6E-49 341.5 23.8 201 28-233 334-557 (588)
276 cd03229 ABC_Class3 This class 100.0 9E-45 1.9E-49 293.7 19.4 161 29-221 1-178 (178)
277 PRK10938 putative molybdenum t 100.0 4.8E-45 1.1E-49 337.4 20.3 200 25-225 257-484 (490)
278 PRK15439 autoinducer 2 ABC tra 100.0 4.7E-45 1E-49 338.9 19.9 201 25-232 265-490 (510)
279 KOG0057 Mitochondrial Fe/S clu 100.0 1.4E-44 3.1E-49 324.7 22.0 201 28-234 351-574 (591)
280 PRK10762 D-ribose transporter 100.0 9.2E-45 2E-49 336.4 21.0 200 26-232 255-482 (501)
281 COG1132 MdlB ABC-type multidru 100.0 1.4E-44 3E-49 339.7 22.5 203 28-235 328-553 (567)
282 PRK10982 galactose/methyl gala 100.0 1.6E-44 3.5E-49 334.0 22.4 205 25-233 247-479 (491)
283 COG4608 AppF ABC-type oligopep 100.0 6.9E-45 1.5E-49 305.0 18.0 183 27-232 3-197 (268)
284 cd03288 ABCC_SUR2 The SUR doma 100.0 5E-44 1.1E-48 305.2 23.7 201 27-234 18-243 (257)
285 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.9E-44 6.3E-49 295.9 20.9 172 29-230 1-190 (200)
286 cd03290 ABCC_SUR1_N The SUR do 100.0 4.5E-44 9.7E-49 298.3 22.3 187 30-221 2-218 (218)
287 TIGR02203 MsbA_lipidA lipid A 100.0 2.2E-44 4.8E-49 338.4 22.8 201 28-233 330-555 (571)
288 TIGR01846 type_I_sec_HlyB type 100.0 2.1E-44 4.5E-49 345.6 22.9 203 27-234 454-680 (694)
289 cd03213 ABCG_EPDR ABCG transpo 100.0 5.5E-44 1.2E-48 293.0 22.1 170 28-223 3-191 (194)
290 PRK03695 vitamin B12-transport 100.0 2.7E-44 5.9E-49 305.4 20.9 193 30-232 2-220 (248)
291 PRK13540 cytochrome c biogenes 100.0 2.9E-44 6.3E-49 295.8 20.5 183 28-215 1-197 (200)
292 KOG0058 Peptide exporter, ABC 100.0 2.2E-44 4.7E-49 332.9 21.7 203 27-234 464-691 (716)
293 cd03232 ABC_PDR_domain2 The pl 100.0 6.8E-44 1.5E-48 291.9 22.0 170 28-223 3-189 (192)
294 TIGR01192 chvA glucan exporter 100.0 7.4E-44 1.6E-48 335.8 24.7 203 27-234 333-558 (585)
295 TIGR01842 type_I_sec_PrtD type 100.0 8E-44 1.7E-48 333.1 24.7 204 27-235 315-543 (544)
296 cd03228 ABCC_MRP_Like The MRP 100.0 7.5E-44 1.6E-48 286.6 20.3 157 29-221 1-171 (171)
297 cd03233 ABC_PDR_domain1 The pl 100.0 1.5E-43 3.2E-48 292.2 22.1 176 28-223 3-199 (202)
298 COG1129 MglA ABC-type sugar tr 100.0 1.1E-43 2.3E-48 321.3 22.7 195 25-223 5-224 (500)
299 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.5E-43 1.2E-47 302.1 26.1 199 25-234 36-247 (282)
300 PRK13409 putative ATPase RIL; 100.0 8.1E-44 1.8E-48 334.5 22.6 191 25-223 337-532 (590)
301 TIGR03771 anch_rpt_ABC anchore 100.0 9.9E-44 2.1E-48 297.4 20.3 181 50-233 1-200 (223)
302 TIGR01257 rim_protein retinal- 100.0 1.9E-43 4E-48 361.2 26.0 207 26-236 1935-2161(2272)
303 TIGR01257 rim_protein retinal- 100.0 2.9E-43 6.3E-48 359.8 27.2 207 26-236 926-1151(2272)
304 TIGR02204 MsbA_rel ABC transpo 100.0 2.4E-43 5.2E-48 331.8 24.4 202 28-234 337-563 (576)
305 KOG0055 Multidrug/pheromone ex 100.0 5.1E-44 1.1E-48 346.4 20.0 204 27-235 349-577 (1228)
306 PRK10789 putative multidrug tr 100.0 4.7E-43 1E-47 329.5 25.0 202 28-234 313-538 (569)
307 COG1119 ModF ABC-type molybden 100.0 4.9E-44 1.1E-48 294.8 15.6 200 25-227 28-255 (257)
308 COG4525 TauB ABC-type taurine 100.0 1.2E-43 2.6E-48 283.1 16.3 194 27-223 2-214 (259)
309 TIGR01166 cbiO cobalt transpor 100.0 1.6E-43 3.4E-48 289.1 16.8 165 40-206 3-189 (190)
310 PRK13541 cytochrome c biogenes 100.0 4.8E-43 1E-47 287.5 19.6 181 28-214 1-192 (195)
311 PLN03073 ABC transporter F fam 100.0 1.2E-42 2.7E-47 332.1 25.4 209 26-235 175-432 (718)
312 PRK10522 multidrug transporter 100.0 6.2E-43 1.3E-47 327.3 22.8 196 28-231 322-536 (547)
313 COG4172 ABC-type uncharacteriz 100.0 8.7E-43 1.9E-47 303.7 21.3 206 25-232 273-514 (534)
314 cd03222 ABC_RNaseL_inhibitor T 100.0 8E-43 1.7E-47 281.6 18.8 154 32-233 4-162 (177)
315 COG4161 ArtP ABC-type arginine 100.0 2.4E-43 5.2E-48 274.0 14.8 201 28-233 2-229 (242)
316 PTZ00265 multidrug resistance 100.0 8.9E-43 1.9E-47 353.5 23.0 203 28-234 1165-1452(1466)
317 COG4619 ABC-type uncharacteriz 100.0 5.2E-44 1.1E-48 278.9 10.6 191 28-222 3-212 (223)
318 PRK15177 Vi polysaccharide exp 100.0 2E-42 4.3E-47 287.7 20.6 186 44-235 2-193 (213)
319 COG3845 ABC-type uncharacteriz 100.0 1.5E-42 3.3E-47 308.9 20.7 193 27-223 3-219 (501)
320 TIGR02857 CydD thiol reductant 100.0 2.1E-42 4.5E-47 322.5 22.0 186 28-217 320-529 (529)
321 TIGR02868 CydC thiol reductant 100.0 1.3E-42 2.8E-47 323.9 20.6 174 28-204 334-529 (529)
322 TIGR00954 3a01203 Peroxysomal 100.0 3.5E-42 7.7E-47 327.8 23.8 188 27-219 450-653 (659)
323 PLN03232 ABC transporter C fam 100.0 4.8E-42 1E-46 350.1 24.8 203 27-235 1233-1459(1495)
324 KOG0927 Predicted transporter 100.0 3E-43 6.6E-48 315.4 14.1 213 25-237 386-599 (614)
325 PLN03130 ABC transporter C fam 100.0 7.5E-42 1.6E-46 349.5 25.7 202 27-234 1236-1461(1622)
326 PLN03211 ABC transporter G-25; 100.0 5.8E-42 1.2E-46 325.5 22.4 202 32-237 72-299 (659)
327 COG4674 Uncharacterized ABC-ty 100.0 1.6E-42 3.4E-47 276.6 15.1 203 27-234 4-235 (249)
328 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.4E-42 1.2E-46 321.4 21.2 190 28-224 337-550 (555)
329 COG4148 ModC ABC-type molybdat 100.0 2.7E-42 5.8E-47 288.4 15.9 195 33-234 5-218 (352)
330 KOG0062 ATPase component of AB 100.0 6.3E-42 1.4E-46 305.4 18.5 232 6-237 340-572 (582)
331 TIGR00957 MRP_assoc_pro multi 100.0 2E-41 4.2E-46 346.0 23.8 202 27-234 1283-1508(1522)
332 cd03236 ABC_RNaseL_inhibitor_d 100.0 8.4E-42 1.8E-46 291.0 17.4 185 32-222 4-216 (255)
333 PTZ00243 ABC transporter; Prov 100.0 4.1E-41 8.8E-46 343.5 24.6 201 28-234 1308-1533(1560)
334 cd03238 ABC_UvrA The excision 100.0 1.9E-41 4.2E-46 273.3 17.1 149 42-223 8-167 (176)
335 PTZ00265 multidrug resistance 100.0 3.8E-41 8.1E-46 341.7 23.4 189 28-220 382-655 (1466)
336 COG4586 ABC-type uncharacteriz 100.0 6.5E-42 1.4E-46 285.3 14.4 192 43-236 38-248 (325)
337 PRK10535 macrolide transporter 100.0 1.2E-40 2.7E-45 316.8 25.2 201 27-232 3-230 (648)
338 COG4107 PhnK ABC-type phosphon 100.0 5E-41 1.1E-45 264.0 17.3 200 26-227 4-234 (258)
339 TIGR01187 potA spermidine/putr 100.0 5.9E-41 1.3E-45 295.2 19.7 171 60-234 1-190 (325)
340 KOG0055 Multidrug/pheromone ex 100.0 6.4E-41 1.4E-45 324.9 20.0 202 28-234 987-1213(1228)
341 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.6E-40 3.4E-45 263.5 18.7 153 31-221 2-157 (157)
342 COG4172 ABC-type uncharacteriz 100.0 1.9E-40 4.1E-45 289.1 20.0 206 25-231 3-244 (534)
343 COG4618 ArpD ABC-type protease 100.0 4.1E-40 8.9E-45 293.8 21.5 207 26-237 332-563 (580)
344 TIGR01271 CFTR_protein cystic 100.0 6.7E-40 1.4E-44 334.1 25.2 201 27-234 1216-1440(1490)
345 PRK13409 putative ATPase RIL; 100.0 2.6E-40 5.7E-45 310.7 18.5 184 32-220 77-287 (590)
346 KOG0066 eIF2-interacting prote 100.0 2.9E-40 6.4E-45 290.5 15.9 220 15-236 574-793 (807)
347 COG0396 sufC Cysteine desulfur 100.0 7.5E-39 1.6E-43 261.4 22.0 208 27-238 2-237 (251)
348 TIGR00957 MRP_assoc_pro multi 100.0 4.2E-39 9.1E-44 328.9 24.5 199 28-234 636-850 (1522)
349 COG1134 TagH ABC-type polysacc 100.0 4E-39 8.7E-44 265.8 18.9 190 42-236 40-238 (249)
350 PLN03232 ABC transporter C fam 100.0 4.3E-39 9.2E-44 328.5 23.1 201 27-234 613-828 (1495)
351 PLN03130 ABC transporter C fam 100.0 5.5E-39 1.2E-43 328.5 23.6 200 27-234 613-828 (1622)
352 TIGR00956 3a01205 Pleiotropic 100.0 9.7E-39 2.1E-43 323.5 23.9 200 26-229 757-988 (1394)
353 TIGR00955 3a01204 The Eye Pigm 100.0 7.8E-39 1.7E-43 303.1 21.5 192 41-236 37-258 (617)
354 COG4167 SapF ABC-type antimicr 100.0 4E-39 8.6E-44 255.0 15.3 205 27-232 3-237 (267)
355 KOG0056 Heavy metal exporter H 100.0 1.3E-39 2.8E-44 289.3 13.7 203 28-235 537-762 (790)
356 cd03270 ABC_UvrA_I The excisio 100.0 6.8E-38 1.5E-42 262.7 20.0 179 41-223 7-223 (226)
357 TIGR01271 CFTR_protein cystic 100.0 9.4E-38 2E-42 318.3 24.1 184 43-234 440-636 (1490)
358 COG1101 PhnK ABC-type uncharac 100.0 2.8E-38 6.1E-43 255.6 15.2 195 28-223 1-228 (263)
359 PLN03140 ABC transporter G fam 100.0 1.3E-37 2.8E-42 315.2 22.9 198 28-229 867-1105(1470)
360 KOG0062 ATPase component of AB 100.0 5.5E-39 1.2E-43 286.7 11.3 203 28-238 80-289 (582)
361 COG4133 CcmA ABC-type transpor 100.0 4.8E-38 1E-42 249.5 13.6 177 28-208 2-194 (209)
362 PTZ00243 ABC transporter; Prov 100.0 1.9E-36 4E-41 309.4 23.5 184 42-234 673-870 (1560)
363 TIGR00956 3a01205 Pleiotropic 100.0 1.4E-36 3E-41 307.9 22.2 191 42-236 74-302 (1394)
364 PLN03140 ABC transporter G fam 100.0 8.9E-37 1.9E-41 309.1 19.3 193 42-237 178-430 (1470)
365 COG5265 ATM1 ABC-type transpor 100.0 5.3E-37 1.2E-41 268.7 14.9 203 28-235 262-487 (497)
366 KOG0927 Predicted transporter 100.0 1.8E-37 3.9E-42 278.3 11.6 200 28-234 75-309 (614)
367 COG4136 ABC-type uncharacteriz 100.0 8.3E-37 1.8E-41 234.8 13.5 187 28-217 2-207 (213)
368 COG4778 PhnL ABC-type phosphon 100.0 2.3E-37 5E-42 242.2 10.2 190 28-219 4-227 (235)
369 KOG0054 Multidrug resistance-a 100.0 1.8E-35 4E-40 292.2 22.0 203 24-234 514-731 (1381)
370 KOG0059 Lipid exporter ABCA1 a 100.0 3.6E-36 7.8E-41 294.0 16.1 208 27-236 563-789 (885)
371 KOG0054 Multidrug resistance-a 100.0 2.2E-35 4.9E-40 291.6 19.6 208 22-235 1132-1363(1381)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 9.1E-35 2E-39 238.9 15.8 154 46-219 14-190 (197)
373 KOG0061 Transporter, ABC super 100.0 3.1E-34 6.7E-39 270.4 21.0 205 28-236 25-262 (613)
374 cd03271 ABC_UvrA_II The excisi 100.0 7E-33 1.5E-37 236.0 16.9 183 44-229 10-261 (261)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 9.1E-33 2E-37 229.6 15.9 180 28-222 5-211 (213)
376 PF00005 ABC_tran: ABC transpo 100.0 2.1E-33 4.6E-38 217.1 9.8 122 45-176 1-137 (137)
377 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.1E-31 2.4E-36 226.9 17.7 180 29-218 4-234 (243)
378 COG1245 Predicted ATPase, RNas 100.0 2.1E-31 4.6E-36 235.4 16.8 185 26-218 340-530 (591)
379 COG4178 ABC-type uncharacteriz 100.0 4.4E-31 9.4E-36 243.6 17.9 188 26-218 390-587 (604)
380 COG4138 BtuD ABC-type cobalami 100.0 1.3E-32 2.7E-37 216.6 3.9 196 28-233 3-220 (248)
381 cd03273 ABC_SMC2_euk Eukaryoti 100.0 7.6E-31 1.6E-35 223.2 14.2 163 55-218 25-242 (251)
382 COG4615 PvdE ABC-type sideroph 100.0 5.2E-31 1.1E-35 229.5 12.2 191 27-227 321-531 (546)
383 COG1129 MglA ABC-type sugar tr 100.0 5E-30 1.1E-34 232.5 18.9 195 25-224 260-481 (500)
384 cd03240 ABC_Rad50 The catalyti 100.0 2.5E-30 5.5E-35 213.6 15.0 157 48-220 16-198 (204)
385 cd03274 ABC_SMC4_euk Eukaryoti 100.0 1.5E-31 3.1E-36 222.2 6.1 179 29-219 6-204 (212)
386 KOG0066 eIF2-interacting prote 100.0 8E-31 1.7E-35 231.1 8.5 199 28-236 264-501 (807)
387 PRK00349 uvrA excinuclease ABC 100.0 1.3E-28 2.8E-33 239.8 21.3 107 126-234 809-927 (943)
388 COG4170 SapD ABC-type antimicr 100.0 1.9E-29 4.2E-34 204.1 11.3 204 27-231 2-245 (330)
389 cd03276 ABC_SMC6_euk Eukaryoti 100.0 9.2E-29 2E-33 203.4 15.2 161 44-221 11-192 (198)
390 cd03275 ABC_SMC1_euk Eukaryoti 100.0 4.4E-29 9.5E-34 211.9 13.7 181 29-219 4-233 (247)
391 PRK00635 excinuclease ABC subu 100.0 2.8E-28 6E-33 246.9 21.2 104 129-234 791-906 (1809)
392 TIGR00630 uvra excinuclease AB 100.0 1.3E-27 2.9E-32 232.4 19.5 105 126-232 807-923 (924)
393 KOG0060 Long-chain acyl-CoA tr 100.0 1.9E-27 4.2E-32 215.3 18.2 193 24-220 429-642 (659)
394 KOG2355 Predicted ABC-type tra 100.0 3.7E-27 8.1E-32 190.0 16.9 203 26-232 11-235 (291)
395 COG3845 ABC-type uncharacteriz 100.0 4.8E-27 1E-31 209.9 19.3 209 22-231 251-489 (501)
396 KOG0065 Pleiotropic drug resis 99.9 7.7E-27 1.7E-31 227.5 11.2 202 28-230 787-1017(1391)
397 cd03280 ABC_MutS2 MutS2 homolo 99.9 2.7E-26 5.9E-31 188.9 11.4 140 45-223 17-169 (200)
398 COG1245 Predicted ATPase, RNas 99.9 9.3E-26 2E-30 199.8 11.7 181 33-218 79-287 (591)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.5E-25 5.3E-30 184.9 12.9 169 45-221 14-211 (213)
400 KOG0064 Peroxisomal long-chain 99.9 2.1E-25 4.5E-30 200.3 13.1 185 28-217 481-681 (728)
401 COG2401 ABC-type ATPase fused 99.9 1.1E-24 2.5E-29 191.1 14.1 178 43-223 397-588 (593)
402 cd03239 ABC_SMC_head The struc 99.9 2.4E-23 5.3E-28 168.4 14.3 71 148-219 95-172 (178)
403 cd03227 ABC_Class2 ABC-type Cl 99.9 1.2E-23 2.7E-28 167.6 10.3 137 46-219 12-155 (162)
404 cd03241 ABC_RecN RecN ATPase i 99.9 2.2E-22 4.8E-27 173.5 16.4 75 146-221 169-249 (276)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.9 1.1E-22 2.3E-27 170.1 12.5 148 41-223 16-171 (222)
406 PRK00635 excinuclease ABC subu 99.9 2E-21 4.3E-26 197.5 20.4 108 126-235 1678-1797(1809)
407 cd03243 ABC_MutS_homologs The 99.9 7.2E-23 1.6E-27 168.8 7.1 145 46-223 20-169 (202)
408 COG0178 UvrA Excinuclease ATPa 99.9 1.9E-21 4.2E-26 182.2 17.3 105 128-234 803-919 (935)
409 KOG0063 RNAse L inhibitor, ABC 99.9 1.2E-21 2.6E-26 172.7 11.8 181 36-219 343-532 (592)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.8 9E-21 1.9E-25 156.5 10.5 140 41-212 15-159 (204)
411 cd03283 ABC_MutS-like MutS-lik 99.8 7.6E-21 1.6E-25 156.4 9.6 134 42-210 14-154 (199)
412 KOG0065 Pleiotropic drug resis 99.8 3E-20 6.5E-25 181.9 13.8 194 42-237 128-354 (1391)
413 PRK00349 uvrA excinuclease ABC 99.8 2.8E-20 6.1E-25 181.7 12.9 103 130-234 472-585 (943)
414 TIGR00630 uvra excinuclease AB 99.8 4.1E-20 8.8E-25 180.3 13.5 102 130-233 470-582 (924)
415 cd03242 ABC_RecF RecF is a rec 99.8 1.4E-19 3E-24 155.7 15.2 77 145-222 181-269 (270)
416 cd03284 ABC_MutS1 MutS1 homolo 99.8 1E-19 2.2E-24 151.6 9.8 142 42-223 18-171 (216)
417 smart00534 MUTSac ATPase domai 99.8 3.2E-19 6.9E-24 145.2 7.0 124 57-213 1-130 (185)
418 cd03281 ABC_MSH5_euk MutS5 hom 99.8 6.5E-18 1.4E-22 140.4 13.6 131 44-211 18-161 (213)
419 PF02463 SMC_N: RecF/RecN/SMC 99.7 1.7E-17 3.7E-22 138.2 12.2 163 46-217 16-211 (220)
420 TIGR01069 mutS2 MutS2 family p 99.7 6.1E-18 1.3E-22 163.3 8.4 148 28-208 295-449 (771)
421 TIGR02858 spore_III_AA stage I 99.7 2E-16 4.4E-21 135.6 15.5 143 56-232 112-267 (270)
422 cd03287 ABC_MSH3_euk MutS3 hom 99.7 2.5E-16 5.4E-21 131.5 12.4 133 42-208 18-158 (222)
423 PRK13695 putative NTPase; Prov 99.7 3.5E-17 7.6E-22 131.7 5.2 152 57-225 2-156 (174)
424 KOG0063 RNAse L inhibitor, ABC 99.6 2.2E-16 4.8E-21 139.6 7.0 165 53-218 98-287 (592)
425 PRK00409 recombination and DNA 99.6 1.3E-15 2.8E-20 147.6 9.0 140 47-217 318-463 (782)
426 cd01128 rho_factor Transcripti 99.6 2E-14 4.3E-19 122.0 12.4 160 50-223 11-212 (249)
427 TIGR00634 recN DNA repair prot 99.6 1E-14 2.2E-19 137.4 9.8 75 146-221 439-519 (563)
428 TIGR00618 sbcc exonuclease Sbc 99.6 9.7E-15 2.1E-19 146.2 10.2 80 141-220 944-1036(1042)
429 PHA02562 46 endonuclease subun 99.6 1.3E-14 2.8E-19 136.6 9.3 79 143-222 464-555 (562)
430 cd03286 ABC_MSH6_euk MutS6 hom 99.5 5E-14 1.1E-18 117.3 10.4 137 41-211 16-160 (218)
431 PRK08533 flagellar accessory p 99.5 5.1E-14 1.1E-18 118.4 9.6 157 29-218 8-184 (230)
432 PRK10869 recombination and rep 99.5 5.4E-14 1.2E-18 131.9 10.2 73 147-220 430-508 (553)
433 PRK06793 fliI flagellum-specif 99.5 1.6E-13 3.4E-18 124.2 12.5 162 28-223 130-301 (432)
434 PRK07721 fliI flagellum-specif 99.5 4.6E-13 1E-17 121.9 14.8 161 41-229 145-338 (438)
435 PTZ00132 GTP-binding nuclear p 99.5 7.9E-14 1.7E-18 115.7 8.3 49 145-193 148-203 (215)
436 PRK01156 chromosome segregatio 99.5 2.3E-13 4.9E-18 134.7 12.7 75 143-218 797-883 (895)
437 PRK03918 chromosome segregatio 99.5 1.3E-13 2.9E-18 136.0 9.9 76 142-218 783-867 (880)
438 PF13304 AAA_21: AAA domain; P 99.5 5.1E-14 1.1E-18 117.1 5.9 64 144-207 233-302 (303)
439 COG3910 Predicted ATPase [Gene 99.5 3.6E-12 7.7E-17 102.1 14.7 81 142-223 124-207 (233)
440 cd01124 KaiC KaiC is a circadi 99.5 5.9E-13 1.3E-17 107.6 10.6 78 141-218 65-163 (187)
441 TIGR00606 rad50 rad50. This fa 99.4 2.6E-13 5.7E-18 138.6 9.9 75 144-218 1196-1289(1311)
442 PRK10246 exonuclease subunit S 99.4 5.8E-13 1.3E-17 133.3 10.3 78 142-219 944-1032(1047)
443 COG0178 UvrA Excinuclease ATPa 99.4 2.9E-12 6.3E-17 121.2 12.4 103 131-235 465-578 (935)
444 PRK00064 recF recombination pr 99.4 1.4E-12 3.1E-17 116.5 8.9 78 145-222 271-359 (361)
445 TIGR02168 SMC_prok_B chromosom 99.4 9.8E-13 2.1E-17 132.7 8.5 76 142-218 1084-1165(1179)
446 TIGR02788 VirB11 P-type DNA tr 99.3 3.3E-12 7.2E-17 111.9 7.4 143 48-233 137-280 (308)
447 cd00820 PEPCK_HprK Phosphoenol 99.3 5.7E-12 1.2E-16 93.0 6.5 43 42-90 2-44 (107)
448 TIGR02169 SMC_prok_A chromosom 99.3 8.9E-12 1.9E-16 126.0 9.1 76 143-219 1070-1151(1164)
449 cd01120 RecA-like_NTPases RecA 99.3 2.4E-11 5.2E-16 95.1 9.0 127 57-207 1-140 (165)
450 PRK13830 conjugal transfer pro 99.2 1.8E-10 3.8E-15 112.9 15.9 61 163-223 650-723 (818)
451 PRK02224 chromosome segregatio 99.2 1.4E-11 3.1E-16 121.7 8.4 76 144-220 778-869 (880)
452 PRK06067 flagellar accessory p 99.2 1.7E-10 3.6E-15 97.1 12.9 149 51-219 21-187 (234)
453 TIGR03238 dnd_assoc_3 dnd syst 99.2 2.8E-11 6E-16 110.0 4.8 47 43-91 20-67 (504)
454 TIGR00611 recf recF protein. A 99.1 1E-10 2.2E-15 104.7 7.9 63 146-208 274-345 (365)
455 cd01131 PilT Pilus retraction 99.1 4E-10 8.7E-15 92.6 9.6 118 57-217 3-121 (198)
456 smart00382 AAA ATPases associa 99.1 4.8E-09 1E-13 79.1 14.1 115 54-203 1-125 (148)
457 COG0419 SbcC ATPase involved i 99.1 6.1E-10 1.3E-14 110.5 9.6 77 142-219 810-897 (908)
458 PRK14079 recF recombination pr 99.0 6.6E-10 1.4E-14 99.0 8.4 75 146-224 262-345 (349)
459 PRK05399 DNA mismatch repair p 99.0 1.3E-09 2.9E-14 107.0 11.3 135 43-213 596-738 (854)
460 PRK06002 fliI flagellum-specif 99.0 1.6E-09 3.5E-14 98.5 9.6 62 26-88 137-198 (450)
461 cd02023 UMPK Uridine monophosp 99.0 1.5E-09 3.4E-14 88.8 8.7 109 57-180 1-113 (198)
462 TIGR01026 fliI_yscN ATPase Fli 99.0 8.6E-09 1.9E-13 94.1 13.2 49 38-87 147-195 (440)
463 TIGR02680 conserved hypothetic 99.0 1.2E-09 2.7E-14 111.8 7.8 66 142-207 1242-1319(1353)
464 PRK06995 flhF flagellar biosyn 98.9 3.1E-09 6.7E-14 97.7 7.9 167 44-222 245-429 (484)
465 cd01125 repA Hexameric Replica 98.9 4.6E-09 1E-13 88.7 8.3 43 161-204 107-159 (239)
466 COG4637 Predicted ATPase [Gene 98.9 3.7E-08 8.1E-13 84.9 13.2 72 146-217 269-344 (373)
467 TIGR02655 circ_KaiC circadian 98.9 2.9E-11 6.4E-16 112.0 -7.8 148 51-218 17-190 (484)
468 PLN03210 Resistant to P. syrin 98.9 2.1E-08 4.5E-13 101.9 12.0 142 48-218 200-349 (1153)
469 cd01130 VirB11-like_ATPase Typ 98.8 1.6E-09 3.6E-14 88.0 3.1 45 45-89 15-59 (186)
470 TIGR02903 spore_lon_C ATP-depe 98.7 4.3E-08 9.3E-13 93.4 9.5 117 54-192 174-291 (615)
471 PRK07594 type III secretion sy 98.7 2.7E-08 5.8E-13 90.5 7.5 60 28-88 129-188 (433)
472 TIGR00767 rho transcription te 98.7 2.3E-08 4.9E-13 89.7 6.7 54 28-81 130-194 (415)
473 PF13555 AAA_29: P-loop contai 98.7 1.9E-08 4E-13 66.8 4.4 39 45-83 12-51 (62)
474 TIGR01420 pilT_fam pilus retra 98.7 7.9E-08 1.7E-12 85.5 9.7 113 52-206 119-232 (343)
475 PF00488 MutS_V: MutS domain V 98.7 7.8E-07 1.7E-11 75.0 15.1 46 163-208 120-170 (235)
476 PRK13891 conjugal transfer pro 98.7 2.8E-07 6.1E-12 90.9 14.0 52 158-209 680-735 (852)
477 cd01876 YihA_EngB The YihA (En 98.7 1E-07 2.3E-12 74.4 8.8 130 58-192 2-168 (170)
478 cd01136 ATPase_flagellum-secre 98.7 5.2E-08 1.1E-12 85.7 7.0 54 33-87 48-101 (326)
479 TIGR03881 KaiC_arch_4 KaiC dom 98.6 1.3E-08 2.7E-13 85.3 1.6 26 51-76 16-41 (229)
480 TIGR00152 dephospho-CoA kinase 98.6 4.8E-08 1E-12 79.4 4.8 129 57-221 1-134 (188)
481 PF13558 SbcCD_C: Putative exo 98.6 6.6E-08 1.4E-12 69.4 4.9 51 142-192 27-90 (90)
482 PRK07196 fliI flagellum-specif 98.6 4.4E-08 9.6E-13 89.0 4.8 43 41-84 142-184 (434)
483 PRK09862 putative ATP-dependen 98.6 4.5E-08 9.7E-13 90.8 4.8 59 31-90 187-245 (506)
484 PRK13898 type IV secretion sys 98.6 1.9E-06 4.1E-11 84.7 15.9 42 47-88 438-479 (800)
485 PRK00454 engB GTP-binding prot 98.6 3.9E-07 8.4E-12 73.9 8.8 63 126-192 126-191 (196)
486 PRK08149 ATP synthase SpaL; Va 98.5 1.7E-07 3.6E-12 85.2 6.7 49 40-89 137-188 (428)
487 PRK06315 type III secretion sy 98.5 1.4E-07 3.1E-12 86.0 5.7 46 42-88 152-198 (442)
488 TIGR02546 III_secr_ATP type II 98.5 1.5E-07 3.2E-12 85.8 5.6 54 34-88 125-178 (422)
489 TIGR03496 FliI_clade1 flagella 98.5 2.8E-07 6.1E-12 83.6 7.1 57 29-86 112-168 (411)
490 TIGR03498 FliI_clade3 flagella 98.5 2E-07 4.3E-12 84.6 5.9 59 29-88 115-173 (418)
491 PRK09099 type III secretion sy 98.5 2.2E-07 4.9E-12 84.7 6.2 49 40-89 149-197 (441)
492 cd00009 AAA The AAA+ (ATPases 98.5 1.8E-06 3.8E-11 65.6 10.0 106 54-205 18-131 (151)
493 PRK14722 flhF flagellar biosyn 98.5 1.6E-06 3.4E-11 77.7 11.0 38 43-80 125-162 (374)
494 TIGR01070 mutS1 DNA mismatch r 98.5 8.5E-07 1.9E-11 87.2 10.0 46 163-208 669-719 (840)
495 PRK00300 gmk guanylate kinase; 98.4 1.5E-07 3.3E-12 77.2 3.7 28 53-80 3-30 (205)
496 TIGR03497 FliI_clade2 flagella 98.4 3E-07 6.5E-12 83.4 5.9 53 34-87 117-169 (413)
497 PRK09825 idnK D-gluconate kina 98.4 1.6E-07 3.4E-12 75.8 3.6 28 54-81 2-29 (176)
498 PRK10078 ribose 1,5-bisphospho 98.4 1.8E-07 4E-12 75.9 3.9 27 55-81 2-28 (186)
499 PRK05922 type III secretion sy 98.4 6E-07 1.3E-11 81.7 7.4 53 34-87 137-189 (434)
500 TIGR00235 udk uridine kinase. 98.4 1.8E-07 4E-12 77.2 3.3 29 53-81 4-32 (207)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-59 Score=380.40 Aligned_cols=202 Identities=22% Similarity=0.348 Sum_probs=172.6
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|+++|++++| |+..+|++||++|++||+++|+||||||||||||||+||.+|++|+|++++. ..+
T Consensus 1 ~mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 479999999999 4667999999999999999999999999999999999999999999999873 358
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
|++||++.. .+..+.++++... ..+ ..++++.++|+++|+.+ .++.+|.+|||||||||||||||+.+|+
T Consensus 80 GmVFQ~fnL--FPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~-ka~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 80 GMVFQQFNL--FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred Ceecccccc--cccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-hhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 999998643 3445566655421 112 23456788999999985 5678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH---HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQ---GLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~---~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++|+|||||+|||+...++++ .|++.|.|+|+|||++.|+.++||||++|++|+++ ..|+++++.
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ii-e~g~p~~~f 224 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII-EEGPPEEFF 224 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEE-EecCHHHHh
Confidence 999999999999998877655 45566789999999999999999999999999987 567888774
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.2e-56 Score=375.78 Aligned_cols=202 Identities=32% Similarity=0.497 Sum_probs=171.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
+|+++|++++|+ ++.+++|+||++++|++++|+||||||||||||+|+|+++|.+|+|..+++ ..++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 689999999995 678999999999999999999999999999999999999999999999884 36999
Q ss_pred EeeccCCCCCCCCcHHHHHHHh--------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRC--------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+||.+.....++......+.+. ....+.+.+.++|+.+++. +++++++.+|||||||||.|||||+++|++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence 9999744333332222211110 1122345688899999997 477899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|||||||++||...+.++++.+++. +.|||+|+||++.+.++||++++|++|+++ ..|++++.
T Consensus 160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~-a~G~p~ev 226 (258)
T COG1120 160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV-AQGTPEEV 226 (258)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-eecCcchh
Confidence 9999999999999998888877654 569999999999999999999999999997 67887765
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-56 Score=372.37 Aligned_cols=204 Identities=26% Similarity=0.399 Sum_probs=173.6
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEEEEe
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFS 98 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~~~~ 98 (239)
++++++|+++.|++. .+|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. .+|||+|
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 579999999999644 6999999999999999999999999999999999999999999997664 4799999
Q ss_pred eccCCCCCCCCcHHHHHHHh-C---------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 99 QHHVDGLDLSSNPLLYMMRC-F---------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
|.......+..++.+.+... + ...+.+++.++|+++|+. ++.++++++|||||+|||.|||||+++|++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 97644455556666554321 1 112357899999999998 578999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|+|||||+|+|+.++..+.+.|+ +.++||++||||++.+.++||+|+.|+. ++. +.|+++++..
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~-~~G~~~~~~~ 227 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLI-ASGPPEEVLT 227 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeE-eccChhhccC
Confidence 99999999999999888776665 4477999999999999999999999965 454 5788877643
No 4
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-55 Score=357.89 Aligned_cols=204 Identities=25% Similarity=0.411 Sum_probs=175.6
Q ss_pred CeEEEEeeEEEcCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 27 PIISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~---~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
++++++|+++.|+++. .++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.+++.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999996543 4999999999999999999999999999999999999999999999883
Q ss_pred eEEEEEeeccCCCCCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 92 VRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 92 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
..+.++||++...+++..++...+..... ...++++.++|+.+|+.....++.+.+|||||+||+||||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 35899999998777776665444332211 12355689999999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
+||||||||+||...+..+++.|.+ ++-|+||||||+..+..+|||+++|++|++++ .++..+
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE-~~~~~~ 228 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE-IGPTEE 228 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE-eechhh
Confidence 9999999999999998888887754 35599999999999999999999999999974 444433
No 5
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-55 Score=355.83 Aligned_cols=205 Identities=27% Similarity=0.417 Sum_probs=176.6
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------e
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V 92 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~ 92 (239)
++|+++||++.|++++.+|++|||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++. .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 57999999999988888999999999999999999999999999999999999999999998762 3
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHH--------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMM--------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 158 (239)
.+||+||++. +....+++.+.. ..++..+...+.++|+++|+.+ .+.++.++|||||+|||+|
T Consensus 82 ~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-KAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-HHHHHhccCCcchhHHHHH
Confidence 6999999864 222333333332 1122334566788999999975 5678899999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||||+++|+++|.|||+|+|||.+.+.+++.|++. +.|||+..|+++.+.++|||++-|++|+++ |+|+++++.+
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhH
Confidence 99999999999999999999999999998888653 579999999999999999999999999997 9999988654
Q ss_pred H
Q 026376 235 M 235 (239)
Q Consensus 235 ~ 235 (239)
.
T Consensus 238 ~ 238 (258)
T COG3638 238 E 238 (258)
T ss_pred H
Confidence 4
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-54 Score=358.33 Aligned_cols=201 Identities=24% Similarity=0.325 Sum_probs=171.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
|++++||||.|+ ++.+++|+||+|++||+++++|||||||||+||+|+++++|++|+|++++. .++||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 689999999995 667999999999999999999999999999999999999999999998874 46999
Q ss_pred EeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
+-|.... .+..++.+++... ..++ ..+++.++|+.+|++. ...++++++|||||+|||.+||||+.+|++|
T Consensus 80 viQqigL--FPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 80 VIQQIGL--FPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhccc--CCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 9998643 3334555554321 1122 2467889999999975 4788999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|+||||++|||.++..+.+.+. +.++|||+||||++++..++|||.+|++|+++.+ ++|+++
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P~~i 223 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTPDEI 223 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCHHHH
Confidence 9999999999999988876654 3578999999999999999999999999999865 665554
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-54 Score=356.66 Aligned_cols=190 Identities=27% Similarity=0.389 Sum_probs=162.7
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEeec
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQH 100 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q~ 100 (239)
.+++++++++.|+ ...+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.+++. ..++|+||+
T Consensus 2 ~~l~i~~v~~~f~-~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 2 ALLEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred ceEEEEeeEEEeC-ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 3689999999995 478999999999999999999999999999999999999999999998875 369999999
Q ss_pred cCCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 101 HVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
+. +.++.+...++.... .....+++.++|+.+|+.+ ..+++|++|||||||||+|||||+.+|++||||||
T Consensus 81 ~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 81 DA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred Cc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 74 334455555543211 1123457889999999986 56889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376 175 SNHLDLDAVEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSEG 220 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l----~~~~~tii~vsHd~~~~~~~~d~i~~l~~G 220 (239)
|++||..++..+.+.+ .+.+.||++||||.+++-.++|||++|.++
T Consensus 158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999987766554 445679999999999999999999999984
No 8
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-53 Score=349.44 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=171.0
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 91 (239)
.+.|++++|+++| |++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|++.+.
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5689999999999 5678999999999999999999999999999999999999999999998763
Q ss_pred eEEEEEeeccCCCCCCCCcHHHHHH---HhCCCCcHHH----HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 92 VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVPEQK----LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 92 ~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
.++|++||.-..+- ..+++++.. +.+...++.. +..-|+.+|+.....++.+++|||||++|++||||++.
T Consensus 85 ~r~GvlFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 85 KRMGVLFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred hheeEEeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 36999999853222 223333332 2233444443 34468889998776788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH---hh-cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGL---VL-FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l---~~-~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|+++++||||+||||.+...+-+.+ ++ .+.|+++||||++.+..+|||++++.+|+|. +.|+++++.+
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 99999999999999998866554444 33 4679999999999999999999999999997 8999998753
No 9
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-54 Score=362.46 Aligned_cols=201 Identities=25% Similarity=0.369 Sum_probs=170.9
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
||++++|+|.|..+ ..+++||||+|++||++||+|.||||||||+|||+++.+|++|+|.+++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 68999999999642 46999999999999999999999999999999999999999999998873
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
.+||++||++.. ....+++.+++. ...+. ..+++.++|+.+|++ +..++++.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhFnL--LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHFNL--LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEeccccc--cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHh
Confidence 369999998642 223445444431 11122 246788999999998 4678899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
.+|+|||.|||||+|||++...+++.|++ .+.||++|||.++.+.++|||+.+|++|+++ ..|+..++
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lv-E~G~v~~v 229 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV-EEGTVSEV 229 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEE-EeccHHHh
Confidence 99999999999999999999988887764 3669999999999999999999999999997 56776654
No 10
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-52 Score=350.71 Aligned_cols=206 Identities=32% Similarity=0.484 Sum_probs=176.7
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
+++.++++++.|+++..+|+++||+|++|++++|+|+||||||||+++++|+++|++|+|.+++. .++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 47899999999976567999999999999999999999999999999999999999999987663 359
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
||++|++..++ +..++.+.++... .+. ..+++.++++.+++.+ ..++++.+|||||||||+||.+|+.+|++
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 99999986544 3445555443211 122 2356788999999985 57899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
||||||||+||+.++..+++.+.++ +.|||++|||++++..+||++++|++|+++ ++|++.++.+.
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~~~ 229 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFND 229 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHhhh
Confidence 9999999999999999988877654 459999999999999999999999999997 78998887654
No 11
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.3e-52 Score=345.12 Aligned_cols=193 Identities=30% Similarity=0.424 Sum_probs=161.5
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 91 (239)
+++++||++.|..+ ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.+++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 46899999999533 35899999999999999999999999999999999999999999988762
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
..+||+||++.. ....+..+++.. .+.. ....++.++++.+|+.+...++++.+|||||||||||||||+
T Consensus 81 R~~~iGfvFQ~~nL--l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQNFNL--LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECccCCC--CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 259999998743 233445554431 1112 224567888999999866655889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
.+|+++|+||||.+||.++.+.+++.+.+. +.||||||||...+. +|||++.|++|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999888877653 569999999999887 79999999999953
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-51 Score=357.87 Aligned_cols=206 Identities=26% Similarity=0.412 Sum_probs=173.9
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 97 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~ 97 (239)
.++++|+++.|++++.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.+.+. .++||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 5789999999952568999999999999999999999999999999999999999999998762 359999
Q ss_pred eeccCCCCCCCCcHHHHH-HHhCCC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 98 SQHHVDGLDLSSNPLLYM-MRCFPG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
+|++.....++......+ ...+.. ...+++.++++.+++.+ ..++++++||+|||||++||+||+.+|++|||||
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 999754333332222222 222221 23568899999999986 4478899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 174 PSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~---~-~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
||+|||+.++..+.+.|++. + .||+++||.++.+..+||+|++|++|+++ +.|+++++...
T Consensus 163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~-~~g~~~~l~~~ 227 (293)
T COG1131 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII-AEGTPEELKEK 227 (293)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHHh
Confidence 99999999999888877653 4 59999999999999999999999999997 67888887654
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-52 Score=364.34 Aligned_cols=205 Identities=24% Similarity=0.344 Sum_probs=174.2
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV 96 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~ 96 (239)
.+.++++||++.|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++++ ..+++
T Consensus 3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 35799999999995 678999999999999999999999999999999999999999999999874 46999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhC---CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCF---PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|||+...+ +..++.+++.... ... ..+++.++|+.+++.+ ..++++++|||||||||||||||+.+|++|
T Consensus 82 VFQ~YALF--PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 82 VFQSYALF--PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred eecCcccC--CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 99997533 3345555443211 111 2357899999999985 678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
|||||.++||..-+..+...++ +.+.|.|+||||.+++..++|||.+|++|++. -.|+++++..+
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~-Q~gtP~eiY~~ 227 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE-QVGTPEEIYER 227 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee-ecCCHHHHhhC
Confidence 9999999999998877765554 45779999999999999999999999999997 46888887543
No 14
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5e-51 Score=356.36 Aligned_cols=205 Identities=23% Similarity=0.348 Sum_probs=172.5
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA 95 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~ 95 (239)
.++++++||+++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++++. ..+|
T Consensus 5 ~~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 5 VAPIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred CceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence 35799999999995 467999999999999999999999999999999999999999999998763 3599
Q ss_pred EEeeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|++|++.... ..+..+++. ....... ..++.++++.+++.+ ..++++++||||||||++||+||+.+|++|
T Consensus 84 ~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 84 VVPQFDNLDP--DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-KADAKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred EEeccCcCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999864322 233333332 1111221 345678899999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
||||||+|||+.++..+.+.++++ +.|||++||+++++..+||++++|++|+++ +.|+++++...
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 228 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIES 228 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhc
Confidence 999999999999999988877654 569999999999999999999999999997 68999888644
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-52 Score=350.03 Aligned_cols=204 Identities=24% Similarity=0.322 Sum_probs=173.4
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|+++|+++.| ++..+++|||++|+.||+++++||||||||||||+|+|++.|++|+|.++++ .++
T Consensus 1 m~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 1 MSIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred Cceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence 368999999999 4567899999999999999999999999999999999999999999998875 369
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhC------C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCF------P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
||+||++..+ ..+++.++++... + ...+.++.++|+.+.+++ +.++++.+|||||||||||||||+.+|
T Consensus 80 GfvFQ~YALF--~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQRVALARALA~eP 156 (345)
T COG1118 80 GFVFQHYALF--PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQRVALARALAVEP 156 (345)
T ss_pred eEEEechhhc--ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHHHHHHHHhhcCC
Confidence 9999997532 3345555543211 1 123567889999999974 788999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
++||||||+++||..-+..+...|. +.+.|+++||||.+++.++||||++|++|+|. ..|+++++.+.
T Consensus 157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie-qvg~p~ev~~~ 228 (345)
T COG1118 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE-QVGPPDEVYDH 228 (345)
T ss_pred CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee-eeCCHHHHhcC
Confidence 9999999999999998777766654 44779999999999999999999999999997 46888887543
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-51 Score=357.75 Aligned_cols=202 Identities=23% Similarity=0.353 Sum_probs=172.1
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
+|+++||++.|++.. +++++||+|+.||+++|+||||||||||||+|+|+++|++|+|.++++ +.++++|
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 689999999995322 899999999999999999999999999999999999999999999874 4699999
Q ss_pred eccCCCCCCCCcHHHHHHHhC--C----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMRCF--P----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++.. .+..++.+++.... . ...++++.++++.+++.+ +.++++.+|||||||||||||||+++|+++|||
T Consensus 82 Q~yAL--yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 82 QNYAL--YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred CCccc--cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 99753 34456666654211 1 123567889999999975 668889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||+|+||...+..+...+++ .+.|+|+||||..++..++|||.+|++|++.. -|++.++.+
T Consensus 159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q-~g~p~ely~ 223 (338)
T COG3839 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ-VGTPLELYE 223 (338)
T ss_pred CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee-cCChHHHhh
Confidence 99999999988777665543 46799999999999999999999999999975 577777643
No 17
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.7e-50 Score=357.19 Aligned_cols=205 Identities=25% Similarity=0.343 Sum_probs=172.4
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA 95 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~ 95 (239)
.++|+++||+++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 39 ~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 39 TVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred ceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 45799999999995 557999999999999999999999999999999999999999999998763 3599
Q ss_pred EEeeccCCCCCCCCcHHHHHH---HhCCCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMM---RCFPGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|++|++.... ..+..+++. ..+... ..+++.++++.+++.+ ..++++.+||||||||++||+||+.+|++|
T Consensus 118 ~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 118 VVPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred EEeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999864322 223333332 122111 1345678899999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
||||||+|||+.++..+.+.++++ +.|||++||+++++.++||+|++|++|+++ +.|+++++...
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 262 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALIDE 262 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhh
Confidence 999999999999999998887654 679999999999999999999999999997 68999887643
No 18
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.4e-50 Score=357.66 Aligned_cols=202 Identities=22% Similarity=0.297 Sum_probs=169.4
Q ss_pred eEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376 28 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 91 (239)
||+++|++++|++ ...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999953 236999999999999999999999999999999999999999999988763
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
..++|+||++.. ....+..+++... .... ..+++.++++.+|+.+ ..++++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~l--~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFNL--LSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCccc--cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHh
Confidence 259999998642 2223444443311 1111 2346788999999974 5678999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|++|||||||++||+.++..+++.|++. +.|||+||||++.+.++||++++|++|+++ ..|+++++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999888877653 679999999999999999999999999997 578877764
No 19
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.3e-51 Score=324.24 Aligned_cols=195 Identities=27% Similarity=0.418 Sum_probs=165.8
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~ 93 (239)
||+++||+++|+++..+|+||||+|++||++-|+||||||||||||+|++..+|++|+|++++. .+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5899999999988877999999999999999999999999999999999999999999998763 46
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
||++||++..- ...+++++.+... +..-++++.++|+.+|+.+ ..+..+.+|||||||||+||||++.+|+
T Consensus 81 IGvVFQD~rLL--~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~-k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQDFRLL--PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH-KARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEeeecccc--ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch-hhhcCccccCchHHHHHHHHHHHccCCC
Confidence 99999997422 2234444443211 1123567889999999975 4567789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEee
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPF 225 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~ 225 (239)
+||.||||.+|||.....+++.+. ..|.||+|+|||.+.+.++..|++.+++|+++..
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 999999999999998877766654 4577999999999999999999999999999743
No 20
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.5e-50 Score=383.93 Aligned_cols=213 Identities=96% Similarity=1.485 Sum_probs=184.7
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
+.++|+++|+++.|+++..+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++...++|++|++...
T Consensus 505 ~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~ 584 (718)
T PLN03073 505 GPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDG 584 (718)
T ss_pred CCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence 34689999999999644568999999999999999999999999999999999999999999988878899999986444
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376 105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 184 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~ 184 (239)
+++..+....+.........+++.++|+.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~ 664 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE 664 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 44433433333222233456778899999999754567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376 185 ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 185 ~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 237 (239)
.+++.+.++++|||+||||++++..+||++++|++|+++.+.|++++|.+.+.
T Consensus 665 ~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~~~ 717 (718)
T PLN03073 665 ALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTLQ 717 (718)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHhh
Confidence 99999988777999999999999999999999999999778999999988754
No 21
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.6e-50 Score=351.63 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=170.3
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA 95 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~ 95 (239)
+.+|+++|++++|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 2 NVAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred CcEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 35799999999995 457999999999999999999999999999999999999999999998763 3599
Q ss_pred EEeeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|++|++... ...+...++. ....... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 81 ~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (303)
T TIGR01288 81 VVPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADVRVALLSGGMKRRLTLARALINDPQLL 157 (303)
T ss_pred EEeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999986422 2234443332 1111122 235667899999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||||||+|||+.++..+.+.+++. +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 224 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALID 224 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999988877654 679999999999999999999999999997 6789888754
No 22
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-50 Score=339.92 Aligned_cols=200 Identities=26% Similarity=0.349 Sum_probs=166.2
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI 94 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~~ 94 (239)
|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999995 456999999999999999999999999999999999999999999987652 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
+|++|++... ...+..+++.. ...... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 80 ~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 80 GMLFQSGALF--DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EEEccCcccC--CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999986322 22344444321 111111 345678899999974 4578899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|||||||++||+.++..+.+.+++. +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 225 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEELR 225 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHHc
Confidence 99999999999999999888877653 579999999999999999999999999997 678887764
No 23
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.2e-50 Score=335.74 Aligned_cols=192 Identities=30% Similarity=0.443 Sum_probs=160.3
Q ss_pred eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------e
Q 026376 28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~ 92 (239)
||+++|++++|+++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 48899999999643 46999999999999999999999999999999999999999999988763 2
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
.++|++|++... ...+..+++.. .... ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus 81 ~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQDHRLL--SDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG-KAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecCcccc--ccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 489999986422 22234433321 1111 12356788999999974 567888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
++|||||||++||+.++..+.+.+.+. +.|||+||||++++..+||++++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999988877654 57999999999999999999999999974
No 24
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-50 Score=357.48 Aligned_cols=203 Identities=24% Similarity=0.315 Sum_probs=171.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
+|+++|++++|+++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 6899999999943457999999999999999999999999999999999999999999998874 3599999
Q ss_pred eccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++..+ ...+..+++... .... ...++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 83 Q~~~lf--p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QNYALY--PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CCcccc--CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 987432 233455444321 1111 1346788999999974 678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||++||+.++..+.+.+++ .+.|+|+||||.+++..+||++++|++|++. ..|+++++.+
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~-~~g~~~~~~~ 224 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE-QIGTPVEVYE 224 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EECCHHHHHh
Confidence 99999999999988776654 3679999999999999999999999999997 5688887643
No 25
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-50 Score=381.38 Aligned_cols=210 Identities=39% Similarity=0.728 Sum_probs=181.3
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
++++|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.....++|++|+....
T Consensus 309 ~~~~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~ 387 (638)
T PRK10636 309 PNPLLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEF 387 (638)
T ss_pred CCceEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhh
Confidence 566899999999995 4579999999999999999999999999999999999999999999987667899999974322
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376 105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 184 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~ 184 (239)
+....+....+..........++.++|+.+++.....++++++|||||||||+|||+|+.+|++|||||||||||+.++.
T Consensus 388 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~ 467 (638)
T PRK10636 388 LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467 (638)
T ss_pred CCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 33333444433222222335678899999999654567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 185 ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 185 ~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
.+.+.|.++++|||+||||++++..+||++++|++|+++.+.|++++|.++
T Consensus 468 ~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 518 (638)
T PRK10636 468 ALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQW 518 (638)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHHH
Confidence 999999998889999999999999999999999999997789999999653
No 26
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.3e-50 Score=332.24 Aligned_cols=192 Identities=22% Similarity=0.379 Sum_probs=160.5
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------EEEEEeecc
Q 026376 30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQHH 101 (239)
Q Consensus 30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~~~~~~q~~ 101 (239)
+++|++++|++++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 368999999542579999999999999999999999999999999999999999999987742 589999985
Q ss_pred CCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376 102 VDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179 (239)
Q Consensus 102 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD 179 (239)
...+ ...+..+++... .......++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 3111 123444444221 11223457889999999975 5678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 180 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 180 ~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
+.++..+.+.+++. +.|||++|||++++..+||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999988877654 569999999999999999999999999873
No 27
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-50 Score=354.49 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=172.4
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV 96 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~ 96 (239)
.++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 34799999999995 567899999999999999999999999999999999999999999998774 36999
Q ss_pred EeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
++|++... ...+..+++... .... ..+++.++++.+++.+ +.++++.+|||||||||+|||||+.+|++||
T Consensus 83 vfQ~~~lf--p~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 83 VFQSYALF--PHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EeCCcccC--CCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99987432 233444444321 1111 2357788999999974 5688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 171 LDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||++||+..+..+.+.|++ .+.|+|+||||.+++..+||++++|++|++. ..|+++++.+
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~-~~g~~~~~~~ 226 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM-QIGSPQELYR 226 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999988777754 3679999999999999999999999999997 5788887643
No 28
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-50 Score=335.10 Aligned_cols=199 Identities=21% Similarity=0.309 Sum_probs=165.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 98 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~ 98 (239)
|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 47899999995 457999999999999999999999999999999999999999999988763 2589999
Q ss_pred eccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++... ...+...++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus 80 q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 80 QDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred CCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 986422 22233333321 11111 2346788999999974 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..++++++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 219 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII-AEGTPEEL 219 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EeCChHHc
Confidence 999999999999888877542 569999999999999999999999999997 56776653
No 29
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-50 Score=337.34 Aligned_cols=201 Identities=26% Similarity=0.322 Sum_probs=166.9
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
+|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 5899999999954 57999999999999999999999999999999999999999999988763 2489999
Q ss_pred eccCCCCCCCCcHHHHHHH---hCC-----CC--cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 99 QHHVDGLDLSSNPLLYMMR---CFP-----GV--PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~---~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
|++... ...+..+++.. ... .. ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|++
T Consensus 81 q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 81 QHYALF--RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred cCCccc--CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 986422 22234333321 111 01 1245678899999964 56788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE-QVGTPDEVY 225 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHHh
Confidence 9999999999999999888877643 569999999999999999999999999997 678887764
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=8.2e-50 Score=354.46 Aligned_cols=203 Identities=23% Similarity=0.336 Sum_probs=171.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVF 97 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~ 97 (239)
++|+++|++++|+ +..+|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 3699999999995 456899999999999999999999999999999999999999999998763 359999
Q ss_pred eeccCCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 98 SQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll 171 (239)
+|++... ...++.+++... ... ....++.++++.+++.+ +.++++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~Q~~~lf--p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 82 FQSYALF--PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred eCCcccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9986432 223444444311 111 12456888999999975 67889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 172 DEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||||++||...+..+.+.|++ .+.|+|+||||.+++..+||++++|++|+++ ..|+++++.+
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~-~~g~~~~~~~ 224 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE-QVGTPQEIYR 224 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999988877754 3679999999999999999999999999997 5688887654
No 31
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=9.8e-50 Score=347.65 Aligned_cols=203 Identities=22% Similarity=0.348 Sum_probs=172.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 97 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~ 97 (239)
+++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 589999999995 567999999999999999999999999999999999999999999998763 258999
Q ss_pred eeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 98 SQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll 171 (239)
+|++.... ..+..+++. ....... .+++.++++.+++.+ ..++++..||||||||++|||||+.+|++|||
T Consensus 81 ~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 81 PEHNPLYL--DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred cCCCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99864322 223433332 1111111 356788999999975 46788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 172 DEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
||||+|||+.++..+.+.++++ +.|||++||+++++.++||++++|++|++. +.|+++++...
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 222 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSAA 222 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHHh
Confidence 9999999999999998888765 569999999999999999999999999997 78999988654
No 32
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-50 Score=333.63 Aligned_cols=191 Identities=27% Similarity=0.379 Sum_probs=159.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 99 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q 99 (239)
++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 46899999995 457999999999999999999999999999999999999999999988763 25899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 100 HHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++... ...+..+++.. .... ...+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 80 DYALF--PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred chhhc--cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 86422 22334433321 1111 11345778999999974 4578889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999988877653 569999999999999999999999999986
No 33
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-49 Score=338.54 Aligned_cols=198 Identities=25% Similarity=0.293 Sum_probs=166.2
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEee
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQ 99 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q 99 (239)
.++|+++|++++|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 10 ~~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 45799999999995 457999999999999999999999999999999999999999999988663 25899999
Q ss_pred ccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376 100 HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD 179 (239)
++.. ....+..+++..........++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 89 ~~~l--~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 89 DARL--LPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred CccC--CCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 8632 222345555432211223456788999999974 4578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376 180 LDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228 (239)
Q Consensus 180 ~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 228 (239)
+.++..+.+.|.+ .+.|||+||||++++..+||++++|++|+++ ..++
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~-~~~~ 217 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG-LDLT 217 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecc
Confidence 9999988877754 2579999999999999999999999999986 3443
No 34
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-49 Score=336.11 Aligned_cols=202 Identities=27% Similarity=0.420 Sum_probs=166.9
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI 94 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~~ 94 (239)
++++|++++|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999954257999999999999999999999999999999999999999999988652 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh--------------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC--------------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
+|++|++... ...+...++... ......+++.++++.+++.. ..++++.+|||||||||+|||
T Consensus 81 ~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQFNLI--ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-KAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEcccCccc--ccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-hhCCCcccCCHHHHHHHHHHH
Confidence 9999986422 223343333210 00112345778899999964 567889999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ +.|+++++.+
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 234 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPPAELTD 234 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecCHHHhhH
Confidence 999999999999999999999999888877643 569999999999999999999999999997 6788888744
No 35
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-49 Score=351.24 Aligned_cols=202 Identities=24% Similarity=0.339 Sum_probs=168.2
Q ss_pred eEEEEeeEEEcC--C-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376 28 IISFSDASFGYP--G-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~--~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 91 (239)
||+++|++++|+ + +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 589999999996 1 356999999999999999999999999999999999999999999988752
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
..++|++|++.. ....+..+++.. ..... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~l--~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFNL--LSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD-KADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCcc--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHc
Confidence 359999998642 222344443321 11111 1346778999999974 5678899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|++|||||||++||+.++..+.+.|++. +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~-~~g~~~~~~ 229 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV-EQGTVSEVF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999888877653 569999999999999999999999999997 678877664
No 36
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.6e-49 Score=349.88 Aligned_cols=208 Identities=20% Similarity=0.313 Sum_probs=171.0
Q ss_pred CCCeEEEEeeEEEcCC------------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-
Q 026376 25 GPPIISFSDASFGYPG------------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~------------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~- 91 (239)
.+++|+++||++.|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3568999999999952 135899999999999999999999999999999999999999999988763
Q ss_pred -------------eEEEEEeeccCCCCCCCCcHHHHHHH---hC-CCCc----HHHHHHHHHhcCCCcccccCCCCCCCh
Q 026376 92 -------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CF-PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSG 150 (239)
Q Consensus 92 -------------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSg 150 (239)
..++|++|++...++...+...++.. .+ .... .+++.++++.+++.....++++.+|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 25999999974333333444444321 11 1112 345678899999964556889999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeC
Q 026376 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFH 226 (239)
Q Consensus 151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 226 (239)
||||||+|||||+.+|++||+||||++||+.++..+++.|++. +.|||+||||++++.++||++++|.+|+++ ..
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~ 243 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-EL 243 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EE
Confidence 9999999999999999999999999999999998888777543 569999999999999999999999999997 56
Q ss_pred CChhHHH
Q 026376 227 GTFHDYK 233 (239)
Q Consensus 227 g~~~~~~ 233 (239)
|+.+++.
T Consensus 244 g~~~~i~ 250 (331)
T PRK15079 244 GTYDEVY 250 (331)
T ss_pred cCHHHHH
Confidence 7766653
No 37
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.1e-49 Score=357.99 Aligned_cols=201 Identities=26% Similarity=0.434 Sum_probs=170.3
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++
T Consensus 2 ~~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4799999999995 567999999999999999999999999999999999999999999998763 3589
Q ss_pred EEeeccCCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++...+. .+..+++... +. ....+++.++++.+++. .+.++++.+||||||||++|||||+++
T Consensus 81 ~v~q~~~l~~~--~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 81 SVPQDTSLSFE--FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred EEccCCCCCCC--CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99998643322 3444433211 11 12245678899999997 466889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|++|||||||+|||+.++..+++.|+++ +.|||++|||++++.++||++++|++|+++ ..|+++++
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv-~~G~~~ev 226 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR-AAGPPADV 226 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 9999999999999999988887776643 569999999999999999999999999997 67998875
No 38
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-49 Score=349.34 Aligned_cols=207 Identities=21% Similarity=0.312 Sum_probs=170.8
Q ss_pred CCeEEEEeeEEEcCC---------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----
Q 026376 26 PPIISFSDASFGYPG---------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~---------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----- 91 (239)
+++|+++||++.|+. ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 458999999999952 246899999999999999999999999999999999999999999988762
Q ss_pred ---------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 026376 92 ---------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 155 (239)
Q Consensus 92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 155 (239)
..++|++|++...++...+....+. ..... ...+++.++++.+|+.....++++++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2599999997433443334332221 11111 1235678899999996445678899999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
|+|||||+.+|++||+||||++||..++..+++.|.+. +.|||+||||+..+.++||++++|.+|+++ ..|+.++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~ 241 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQ 241 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHH
Confidence 99999999999999999999999999999888877543 679999999999999999999999999997 5677766
Q ss_pred HH
Q 026376 232 YK 233 (239)
Q Consensus 232 ~~ 233 (239)
+.
T Consensus 242 ~~ 243 (327)
T PRK11308 242 IF 243 (327)
T ss_pred Hh
Confidence 54
No 39
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-49 Score=342.16 Aligned_cols=203 Identities=30% Similarity=0.406 Sum_probs=168.7
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
++|+++|+++.|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 37999999999964456999999999999999999999999999999999999999999998763 2589
Q ss_pred EEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|++|++...+ +..+...++.. ..... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 83 LVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-FRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863111 12344444321 11111 1345778999999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||||||++||+.++..+.+.+.+. +.|||++|||++++.++||++++|++|+++ +.|+++++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 225 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL-AEGDKSLL 225 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHh
Confidence 999999999999999888877643 579999999999999999999999999997 57887654
No 40
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-49 Score=344.00 Aligned_cols=205 Identities=25% Similarity=0.369 Sum_probs=168.9
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
||+++|++++|+++ +.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 58999999999632 24899999999999999999999999999999999999999999988763
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral 162 (239)
..++|++|++...+ +..+...++... ..... ..++.++++.+++.....++++.+||||||||++|||||
T Consensus 81 ~~~~~ig~v~q~~~~~l-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQL-FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhc-ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 14899999863222 123444443211 11111 245778899999964456789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+.+|++|||||||++||+.++..+.+.+.+ .+.|||++|||++++..+||+|++|++|+++ +.|+++++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHc
Confidence 999999999999999999999988877654 3579999999999999999999999999997 6899888753
No 41
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.6e-49 Score=334.70 Aligned_cols=201 Identities=25% Similarity=0.378 Sum_probs=166.2
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~ 96 (239)
|+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999995 456999999999999999999999999999999999999999999988653 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHH---hCCC-------------CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 97 FSQHHVDGLDLSSNPLLYMMR---CFPG-------------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
++|++... ...+..+++.. .... ...+++.++++.+++.. ..++++.+||||||||++|||
T Consensus 80 v~q~~~l~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 80 TFQIPRLF--PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred Eecccccc--cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-hhhCChhhCCHHHHHHHHHHH
Confidence 99986422 22233333321 1101 11335778899999974 567889999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||+.+|++|||||||++||+.++..+.+.+++ .+.|||++|||++++..+||++++|++|++. ..|+++++..
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 232 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI-AEGTPDEVRN 232 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-eecCHHHhcc
Confidence 99999999999999999999999988887765 3569999999999999999999999999997 6788887643
No 42
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.9e-49 Score=352.99 Aligned_cols=205 Identities=24% Similarity=0.357 Sum_probs=172.2
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEE
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIA 95 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~ 95 (239)
..++|+++|+++.|+ +..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 11 ~~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 11 LSPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred CCceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 345799999999995 456899999999999999999999999999999999999999999998774 3599
Q ss_pred EEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|+||++.. ....++.+++... ..... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 90 ~vfQ~~~l--fp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 90 TVFQSYAL--FPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEecCccc--CCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998642 2233455544321 11111 346788999999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||||||++||...+..+.+.|++ .+.|+|+||||.+++..+||++++|++|++. ..|+++++.+
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~i~~ 234 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE-QDGTPREIYE 234 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999988777754 3679999999999999999999999999997 5688877654
No 43
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-49 Score=342.55 Aligned_cols=205 Identities=24% Similarity=0.391 Sum_probs=168.7
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
+|+++||++.|++. +.+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 48999999999642 36999999999999999999999999999999999999999999987652
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHhc
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
..++|++|++...+ +..+...++.. ...... .+++.++++.+|+.. ...++++.+||||||||++|||||+
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 24899999863221 22344444321 111112 245788999999961 3567889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
.+|++|||||||++||+.++..+.+.+++. +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 234 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE-LQGTPREVFK 234 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999888877543 569999999999999999999999999997 6788887643
No 44
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.2e-49 Score=336.86 Aligned_cols=202 Identities=27% Similarity=0.388 Sum_probs=167.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~ 93 (239)
||+++|++++|+++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 4789999999952456999999999999999999999999999999999999999999988752 23
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 159 (239)
++|++|++... ...+...++.... .....+++.++++.+++.. ..++++.+||||||||++||
T Consensus 81 i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQHYNLI--ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-KAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCCCccc--ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHH
Confidence 89999986322 2233444332100 0112346778899999964 55788999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++.++||++++|++|+++ ..|+++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHhC
Confidence 9999999999999999999999999888877643 569999999999999999999999999997 678887763
No 45
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-49 Score=345.92 Aligned_cols=209 Identities=22% Similarity=0.300 Sum_probs=170.9
Q ss_pred CCCCCeEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------
Q 026376 23 RPGPPIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 91 (239)
Q Consensus 23 ~~~~~~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------- 91 (239)
.+++++|+++|+++.|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++++.
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 3456789999999999632 35899999999999999999999999999999999999999999987641
Q ss_pred --------------------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCC
Q 026376 92 --------------------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPM 145 (239)
Q Consensus 92 --------------------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~ 145 (239)
..++|++|++...+ +..+...++... ..... ..++.++++.+++.....++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcc-ccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 24899999863222 123444443211 11111 2456788999999634567889
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 146 ~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+||||++++..+||++++|++|++
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999998887764 357999999999999899999999999999
Q ss_pred EeeCCChhHHH
Q 026376 223 TPFHGTFHDYK 233 (239)
Q Consensus 223 ~~~~g~~~~~~ 233 (239)
+ ..|+++++.
T Consensus 255 ~-~~g~~~~~~ 264 (320)
T PRK13631 255 L-KTGTPYEIF 264 (320)
T ss_pred E-EeCCHHHHh
Confidence 7 678888763
No 46
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-49 Score=345.01 Aligned_cols=204 Identities=24% Similarity=0.298 Sum_probs=168.2
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
+|+++|++++|+++ ..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999643 25899999999999999999999999999999999999999999987531
Q ss_pred -----------------------eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCccccc
Q 026376 92 -----------------------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLAL 142 (239)
Q Consensus 92 -----------------------~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~ 142 (239)
..++|++|++...+ +..+..+++.. ..... ..+++.++++.+|+.....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 24899999863222 22344444421 11111 13467889999999644568
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 143 ~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.+.+ .+.|||+||||++++..+|||+++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 89999999999999999999999999999999999999999888877754 367999999999999999999999999
Q ss_pred CeEEeeCCChhHHH
Q 026376 220 GKATPFHGTFHDYK 233 (239)
Q Consensus 220 G~i~~~~g~~~~~~ 233 (239)
|+++ +.|+++++.
T Consensus 241 G~i~-~~g~~~~~~ 253 (305)
T PRK13651 241 GKII-KDGDTYDIL 253 (305)
T ss_pred CEEE-EECCHHHHh
Confidence 9997 678887754
No 47
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-49 Score=353.10 Aligned_cols=202 Identities=23% Similarity=0.324 Sum_probs=169.1
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 589999999995 457999999999999999999999999999999999999999999998763 2599999
Q ss_pred eccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++... ...+..+++... .... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~l~--~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 82 QSYALY--PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred CCcccC--CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 986422 223444443211 1111 1346788999999974 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||++||+.++..+.+.|++. +.|+|+||||++++..+||++++|++|++. ..|+++++..
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~-~~g~~~~i~~ 223 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH 223 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999998887766543 679999999999999999999999999997 5688877643
No 48
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.6e-49 Score=337.01 Aligned_cols=205 Identities=20% Similarity=0.295 Sum_probs=167.3
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------- 92 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------- 92 (239)
++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 47999999999954 579999999999999999999999999999999999999999999876632
Q ss_pred ------EEEEEeeccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376 93 ------RIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 93 ------~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 159 (239)
.++|++|++...+....+...++.. .... ....++.++++.+++.....++++.+||||||||++||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 3899999863222222222222211 1111 12345678899999964345788999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||+.+|++|||||||++||+.++..+.+.+++ .+.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 240 (258)
T PRK11701 164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL 240 (258)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999988887654 2569999999999999999999999999997 578877664
No 49
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.2e-49 Score=327.98 Aligned_cols=191 Identities=23% Similarity=0.339 Sum_probs=161.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 99 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q 99 (239)
|+++|++++|+ +..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 47899999995 457999999999999999999999999999999999999999999998764 25899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376 100 HHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~ 177 (239)
++.. ....+..+++.. .......+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 80 ~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 80 APGF--YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CCcc--CccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 8632 222344444321 111234567888999999964 45788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 178 LDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 178 LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
||+.++..+.+.+.+ .+.|||++|||++++..+||++++|++|+++
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 999999988887764 3579999999999999999999999999986
No 50
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-49 Score=343.57 Aligned_cols=204 Identities=26% Similarity=0.356 Sum_probs=168.4
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
.++++|++++|++. ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999642 45999999999999999999999999999999999999999999988763
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral 162 (239)
..++|++|++...+. ..+...++.. ...... .+++.++++.+++.....++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 248999998632221 2244444321 111111 245778999999964456788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+.+|++|||||||++||+.++..+.+.|++. +.|||++|||++++..+|||+++|++|+++ +.|+++++.
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 234 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIF 234 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999888777543 579999999999999999999999999997 678887764
No 51
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.3e-49 Score=351.28 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=170.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc--eeEEecCc---------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS--GTVFRSAK---------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~--G~i~~~~~---------~~~~~ 96 (239)
.|+++|++++|+ +..+|+|+||+|.+||+++|+|||||||||||++|+|+++|++ |+|.+++. ..++|
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 489999999995 4579999999999999999999999999999999999999999 99998763 35999
Q ss_pred EeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
++|++... ...++.+++.. ...... ..++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 84 vfQ~~~l~--p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 84 LFQNYALF--PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-AAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EECCcccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99986432 33344444431 111111 346788999999974 5788999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhh---c--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 171 LDEPSNHLDLDAVEALIQGLVL---F--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~---~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||++||+..+..+.+.|++ . +.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~-~~g~~~~~~~ 228 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA-AHGEPQALYD 228 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999988776653 2 569999999999999999999999999997 5788887754
No 52
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-50 Score=323.27 Aligned_cols=207 Identities=20% Similarity=0.296 Sum_probs=168.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 97 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~ 97 (239)
||++.+++++|+....+++||||+++.|+++||+|||||||||+||+|++++.|++|.|+.++- ..+|.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 6899999999965444899999999999999999999999999999999999999999998762 357777
Q ss_pred eeccCCCCCCCCc-HHHHHHHhC---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 98 SQHHVDGLDLSSN-PLLYMMRCF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 98 ~q~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
+-+...+-.++.. .+.++...+ ....+.++.++.+.+++.+ ..++++..+|.||||||+|||||+++|++++|||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~-~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE 159 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE 159 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH-HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence 7332211112211 122332222 1223567888999999974 5688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 174 PSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
||||||..+...+.+.+++ .+.+||++||++++++.+||+++++++|+++ +.|+.+++..+.
T Consensus 160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~ 224 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDART 224 (245)
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHH
Confidence 9999999998877666654 4679999999999999999999999999997 789988876554
No 53
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.2e-49 Score=338.61 Aligned_cols=202 Identities=24% Similarity=0.377 Sum_probs=167.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------e
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V 92 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~ 92 (239)
++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4799999999995 457999999999999999999999999999999999999999999988752 2
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
.++|++|++... ...+...++.. ...... ..++.++++.+++.+ ..++++.+||||||||++|||||+.+
T Consensus 85 ~i~~v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 85 RMSMLFQSGALF--TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-AAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred cEEEEecccccC--CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 489999986322 22233433321 111111 235677899999974 56788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|++|||||||++||+.++..+.+.+++. +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999888877653 569999999999999999999999999997 678887764
No 54
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-49 Score=367.00 Aligned_cols=206 Identities=33% Similarity=0.593 Sum_probs=179.2
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
.+|+++|+++.| +++.+|+++||+|.+|+++||||+||||||||||+|+|...|++|+|......+++|++|++.....
T Consensus 2 ~~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCC
Confidence 479999999999 5678999999999999999999999999999999999999999999999888899999999753321
Q ss_pred CCCcHHHHHHHh-----------------C-------------------CCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 026376 107 LSSNPLLYMMRC-----------------F-------------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 150 (239)
Q Consensus 107 ~~~~~~~~~~~~-----------------~-------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 150 (239)
.++...+... . ....+.++..+|..+|+... ++++++|||
T Consensus 81 --~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 81 --KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred --ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 1222211100 0 00123567788889999754 789999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 230 (239)
Q Consensus 151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 230 (239)
|||.||+||+||+.+|++|||||||||||.+++.|+.+.|+++.+|+|+||||.+|+..+|++|+.++.|++..|.|+|+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 026376 231 DYKKMLQ 237 (239)
Q Consensus 231 ~~~~~~~ 237 (239)
.|.++..
T Consensus 237 ~~~~~r~ 243 (530)
T COG0488 237 SYLEQKA 243 (530)
T ss_pred HHHHHHH
Confidence 9987764
No 55
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3e-49 Score=329.71 Aligned_cols=200 Identities=23% Similarity=0.347 Sum_probs=165.3
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376 29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 97 (239)
Q Consensus 29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~ 97 (239)
|+++|+++.|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4789999999642 57999999999999999999999999999999999999999999988764 248999
Q ss_pred eeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 98 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll 171 (239)
+|++... ...+...++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFDALF--DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcCCcc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9986322 22333333321 11111 1245778899999964 55778899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 172 DEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~ 219 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR-CIGSPQEL 219 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE-ecCCHHHc
Confidence 9999999999999998888754 369999999999999999999999999997 67887654
No 56
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-49 Score=341.67 Aligned_cols=204 Identities=26% Similarity=0.381 Sum_probs=168.0
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
+|+++|+++.|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 58999999999632 35899999999999999999999999999999999999999999988763
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral 162 (239)
..++|++|++...+. ..+..+++.. ..... ..+++.++++.+++.....++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 148999998621111 2344444321 11111 2345788999999963456789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+.+|++|||||||+|||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 233 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIF 233 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999888877653 569999999999999999999999999997 678887764
No 57
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-49 Score=333.65 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=167.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
+|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 589999999995 456999999999999999999999999999999999999999999988763 25899
Q ss_pred EeeccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
++|++... . .+...++.. ........++.++++.+++.....++++.+||||||||++|||||+.+|++||||||
T Consensus 82 ~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 82 VFQQPHLF-E--GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EecCchhc-h--hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99986321 1 244443321 111222456788999999963456788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 175 SNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|++||+.++..+.+.|++ .+.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 220 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV-EYAKTYDFF 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE-EeCCHHHHh
Confidence 999999999988877764 2679999999999999999999999999997 567766653
No 58
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3e-49 Score=350.82 Aligned_cols=202 Identities=25% Similarity=0.305 Sum_probs=170.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999995 457999999999999999999999999999999999999999999998763 3599999
Q ss_pred eccCCCCCCCCcHHHHHHHhC------CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 99 QHHVDGLDLSSNPLLYMMRCF------PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
|++.. ....+..+++.... ... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 81 Q~~~l--~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 81 QHYAL--FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-LADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred cCccc--CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 98642 22334444443211 011 1346788999999974 56789999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||||++||+.++..+.+.|++. +.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~-~~g~~~~i~~ 226 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE-QAGTPDQVWR 226 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999998887776542 569999999999999999999999999997 5788887643
No 59
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-49 Score=329.53 Aligned_cols=196 Identities=28% Similarity=0.374 Sum_probs=161.5
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEee
Q 026376 29 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQ 99 (239)
Q Consensus 29 l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q 99 (239)
|+++|+++.|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999542 56999999999999999999999999999999999999999999998763 35899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 100 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++.. ....+...++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus 81 ~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QDAL--LPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-FENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred cccc--ccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 8642 122233333321 11111 2346788999999964 4577889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEe--CCeEEeeCCC
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATPFHGT 228 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~--~G~i~~~~g~ 228 (239)
||++||+.++..+.+.+++. +.|||++|||++++..+||++++|+ +|+++ ..++
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~-~~~~ 217 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV-AEVE 217 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE-EEEE
Confidence 99999999999988877643 5699999999999999999999999 79986 3444
No 60
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-49 Score=331.19 Aligned_cols=202 Identities=24% Similarity=0.347 Sum_probs=167.1
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 91 (239)
||+++|++++|++. ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999643 17999999999999999999999999999999999999999999987653
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
..++|++|++... ...+..+++.. ..... ....+.++++.+++.+ ..++++.+||||||||++|||||+.
T Consensus 81 ~~~i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQHFNLL--SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-KADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccCcccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhcChhhCCHHHHHHHHHHHHHhc
Confidence 2489999986422 22334433321 11111 1345778999999974 5678899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 229 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV-EEGTVEEVF 229 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999999888877643 569999999999999999999999999997 678877764
No 61
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.8e-49 Score=362.82 Aligned_cols=214 Identities=44% Similarity=0.750 Sum_probs=194.0
Q ss_pred CCCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccC
Q 026376 23 RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHV 102 (239)
Q Consensus 23 ~~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~ 102 (239)
..++.+++++|+++.|++++.+++++||.|.+|+++||+||||+|||||||+|+|...|.+|+|.+....++||+.|+..
T Consensus 316 ~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 316 RLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred cCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 35678999999999996656899999999999999999999999999999999999999999999988899999999874
Q ss_pred CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376 103 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182 (239)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~ 182 (239)
.. ....++++++....+...+..++.+|..|+++.+...+++..||||||.||+||+.++.+|.+|||||||||||.++
T Consensus 396 ~l-~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s 474 (530)
T COG0488 396 EL-DPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474 (530)
T ss_pred hc-CccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHH
Confidence 32 24456777776655444478899999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhhc
Q 026376 183 VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238 (239)
Q Consensus 183 ~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 238 (239)
+..+.+.|.++.+|||+||||.+|+.++|+++|.+++ ++..+.|+|++|.+....
T Consensus 475 ~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~~~ 529 (530)
T COG0488 475 LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQKKE 529 (530)
T ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhhcc
Confidence 9999999999999999999999999999999999998 888888999999887643
No 62
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.9e-49 Score=329.36 Aligned_cols=190 Identities=29% Similarity=0.403 Sum_probs=156.8
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376 29 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 91 (239)
Q Consensus 29 l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 91 (239)
|+++|++++|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999642 56999999999999999999999999999999999999999999987652
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
..++|++|++... ...+..+++.. ..... ..+++.++++.+++.. ..++++.+||||||||++|||||+.
T Consensus 81 ~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFNLL--PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-RLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeeccccC--CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHcc
Confidence 2589999986422 22233333321 11111 2346788999999974 4578889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
+|++|||||||++||+.++..+.+.+++. +.|||+||||++++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999888877643 569999999999997 9999999999974
No 63
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.2e-49 Score=328.20 Aligned_cols=191 Identities=28% Similarity=0.427 Sum_probs=158.8
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~ 93 (239)
||+++|++++|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 4789999999953457999999999999999999999999999999999999999999987652 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
++|++|++... ...+...++.. .... ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus 81 i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQDFRLL--PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-KADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecChhhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 89999986422 22233333321 1111 12346788999999974 4577889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
+|||||||++||+.++..+.+.+++ .+.|||++|||++++..+||++++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999998887765 36799999999999999999999999885
No 64
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.7e-49 Score=330.72 Aligned_cols=197 Identities=22% Similarity=0.336 Sum_probs=162.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-----CCCceeEEecCc------------
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFRSAK------------ 91 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-----~p~~G~i~~~~~------------ 91 (239)
|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|++ +|++|+|.+++.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 47899999995 457999999999999999999999999999999999999 999999988663
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC--C---cHHHHHHHHHhcCCCcccccCC--CCCCChHHHHHHHHHHH
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG--V---PEQKLRAHLGSFGVTGNLALQP--MYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~--~---~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqrv~lara 161 (239)
..++|++|++... ..+..+++.. .... . ..+++.++++.+++.+. .+++ +.+||||||||++||||
T Consensus 80 ~~~i~~~~q~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 80 RRRVGMVFQKPNPF---PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE-VKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HhhEEEEecCchhc---cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH-HhccCCcccCCHHHHHHHHHHHH
Confidence 2489999986422 2344444321 1111 1 23467789999999753 3444 59999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
|+.+|++|||||||++||+.++..+.+.|++.. .|||++|||++++..+||++++|++|+++ +.|++++
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 226 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV-EFGPTEQ 226 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE-EecCccc
Confidence 999999999999999999999999988887642 58999999999999999999999999997 5677654
No 65
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4.1e-49 Score=338.36 Aligned_cols=207 Identities=22% Similarity=0.315 Sum_probs=167.9
Q ss_pred CeEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------
Q 026376 27 PIISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~--------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------- 91 (239)
++|+++||+++|++ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 47999999999952 246999999999999999999999999999999999999999999988752
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
..++|++|++...+....+....+. ..... ...+++.++++.+++.....++++.+|||||||||+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 2489999986322222222222221 11111 113457789999999544556788999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||+.+|++|||||||++||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ ..|+++++.+
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 239 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA 239 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence 999999999999999999999999888877653 569999999999999999999999999997 6788777643
No 66
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.6e-49 Score=337.12 Aligned_cols=205 Identities=21% Similarity=0.326 Sum_probs=167.8
Q ss_pred eEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------
Q 026376 28 IISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~--------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------- 91 (239)
+|+++||++.|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 6899999999952 356999999999999999999999999999999999999999999988752
Q ss_pred ------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376 92 ------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 158 (239)
..++|++|++...+....+..+++. ..... ...+++.++++.+++.....++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 2489999986322222233333321 11111 1235678899999996445678899999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 239 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQLL 239 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHHc
Confidence 99999999999999999999999988887777543 579999999999999999999999999997 568877664
No 67
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-50 Score=330.52 Aligned_cols=203 Identities=28% Similarity=0.404 Sum_probs=172.1
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
+++++++++++| |+..+++||||++++||+++||||||||||||+|+|+|+++|++|+|.+.++ ..+
T Consensus 3 ~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999999 5678999999999999999999999999999999999999999999998874 357
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh------------CC------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC------------FP------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~------------~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 156 (239)
+..||....+. ..+++++++.. .+ ....+++.++|+.+|+.+ .++++.++||+|||+|+
T Consensus 82 ~RTFQ~~rlF~--~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 82 ARTFQITRLFP--GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-LADRPAGNLSYGQQRRL 158 (250)
T ss_pred eeecccccccC--CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-hhcchhhcCChhHhHHH
Confidence 88899864322 23444433211 00 112456788999999975 67899999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
.|||||+.+|++||||||.+||.+.....+.+.+++. +.||++|.||+..+..+||||++|+.|+++ .+|+|+++
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~eV 237 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEEV 237 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHHH
Confidence 9999999999999999999999999988887766543 369999999999999999999999999997 78999997
Q ss_pred HH
Q 026376 233 KK 234 (239)
Q Consensus 233 ~~ 234 (239)
.+
T Consensus 238 ~~ 239 (250)
T COG0411 238 RN 239 (250)
T ss_pred hc
Confidence 64
No 68
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.8e-49 Score=334.10 Aligned_cols=202 Identities=25% Similarity=0.450 Sum_probs=168.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
++|+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++...++|++|++.....
T Consensus 3 ~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 4799999999995 456999999999999999999999999999999999999999999999887789999998643222
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376 107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186 (239)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l 186 (239)
+..+...++. .......+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+
T Consensus 82 l~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 159 (251)
T PRK09544 82 LPLTVNRFLR-LRPGTKKEDILPALKRVQAGH-LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159 (251)
T ss_pred cChhHHHHHh-ccccccHHHHHHHHHHcCChH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 2223333321 122234567888999999974 55788999999999999999999999999999999999999999988
Q ss_pred HHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 187 IQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 187 ~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
.+.|.+. +.|||++|||++++..+||++++|++ +++ ..|+++++.
T Consensus 160 ~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~~ 208 (251)
T PRK09544 160 YDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHHh
Confidence 8877542 67999999999999999999999965 675 568877653
No 69
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-49 Score=340.76 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=167.8
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
.++++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 48999999999532 35999999999999999999999999999999999999999999988762
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral 162 (239)
..++|++|++...+. ..+...++... .... ..+++.++++.+|+.....++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccc-hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 248999998632221 12444443211 1111 2345678899999963456788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+.+|++|||||||++||+.++..+.+.+++. +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 234 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV-SQTSPKELF 234 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999888877643 569999999999999999999999999997 678887754
No 70
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.7e-49 Score=329.81 Aligned_cols=191 Identities=29% Similarity=0.418 Sum_probs=158.5
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEeeccCC
Q 026376 30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVD 103 (239)
Q Consensus 30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q~~~~ 103 (239)
+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++..
T Consensus 1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 3689999995 456999999999999999999999999999999999999999999998873 459999998643
Q ss_pred CCCCCCcHHHHHHHhCC----------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 104 GLDLSSNPLLYMMRCFP----------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 104 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
...+..+..+++..... ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-LADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 21122345444432110 012346788999999964 5678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 174 PSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
||++||+.++..+.+.+.+. +.|||++|||++++.++||++++|++|.+
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 99999999999888877653 46999999999999999999999988643
No 71
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=8.7e-49 Score=325.39 Aligned_cols=192 Identities=22% Similarity=0.347 Sum_probs=159.7
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 99 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q 99 (239)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 478999999954 57999999999999999999999999999999999999999999988763 24899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 100 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++... ...+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+++||||
T Consensus 80 ~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 80 NYALY--PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred Chhhc--cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 86422 22334333321 11111 1345678899999964 5678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATP 224 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~ 224 (239)
||+|||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++.
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 99999999999988877643 5799999999999999999999999999873
No 72
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-48 Score=333.10 Aligned_cols=205 Identities=22% Similarity=0.319 Sum_probs=167.2
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------- 92 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------- 92 (239)
++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4799999999995 4568999999999999999999999999999999999999999999886421
Q ss_pred ------EEEEEeeccCCCCCCCCcHHHHHH----HhC-C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376 93 ------RIAVFSQHHVDGLDLSSNPLLYMM----RCF-P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 93 ------~~~~~~q~~~~~~~~~~~~~~~~~----~~~-~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 159 (239)
.++|++|++...+....+...++. ... . ......+.++++.+++.....++++.+|||||||||+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 389999986322222222222221 111 0 112356788999999964356788999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||+.+|++|||||||+|||+.++..+.+.+.+ .+.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~ 237 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL 237 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999999988877754 2579999999999999999999999999997 567777664
No 73
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.7e-49 Score=327.17 Aligned_cols=193 Identities=22% Similarity=0.304 Sum_probs=161.1
Q ss_pred eEEEEeeEEEcCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEE
Q 026376 28 IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~---~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~ 94 (239)
+|+++|++++|++.. .+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 478999999996431 6999999999999999999999999999999999999999999998763 258
Q ss_pred EEEeeccCCCCCCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+|++|++... ...+..+++. ...... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus 81 ~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 81 GFVSDSTGLY--DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-LLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred EEecCCcccC--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999986322 2223433332 111111 2346788999999964 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|||||||++||+.++..+.+.+.+. +.|||+||||++++..+||++++|++|++.
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 9999999999999999888877653 569999999999999999999999999986
No 74
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-48 Score=364.10 Aligned_cols=210 Identities=30% Similarity=0.574 Sum_probs=180.4
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 105 (239)
+++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++++..++|++|++...+
T Consensus 317 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence 45899999999995 45699999999999999999999999999999999999999999999998888999999863222
Q ss_pred CCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376 106 DLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 184 (239)
Q Consensus 106 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~ 184 (239)
....+...++.... .....+++.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++.
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 22234444432211 12235568889999999534567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 185 ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 185 ~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
.+.+.+.++++|||+||||++++..+||++++|++|+++.+.|+++++.+..
T Consensus 476 ~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 476 SLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 9999999888899999999999999999999999999976789999987654
No 75
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6.8e-49 Score=330.04 Aligned_cols=200 Identities=24% Similarity=0.371 Sum_probs=165.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~ 96 (239)
++++|++++|+ ++.+|+++||++.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 47899999995 456999999999999999999999999999999999999999999988653 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
++|++... ...+..+++.. ..... ...++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||
T Consensus 80 ~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 80 LPQEASIF--RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred ecCCcccc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99986322 22233333321 11111 1245678899999974 5678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 171 LDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||++||+.++..+.+.+++ .+.|||++|||++++..+||++++|++|++. ..|+.+++.
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 221 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEIA 221 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHhh
Confidence 9999999999999988877654 3569999999999999999999999999997 678877764
No 76
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.4e-49 Score=334.56 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=168.7
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 91 (239)
.+|+++|+++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4689999999995 457999999999999999999999999999999999999999999987652
Q ss_pred ---------eEEEEEeeccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 026376 92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 155 (239)
Q Consensus 92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 155 (239)
..++|++|++... ...+..+++.. .... ....++.++++.+++.....++++.+||||||||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~--~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLW--SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cchHHHHHhhceEEEecCcccC--CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 2489999986422 22344444321 1111 1234678899999997543467889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
++|||||+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 239 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQL 239 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 99999999999999999999999999999888876543 679999999999999999999999999997 67888776
Q ss_pred H
Q 026376 233 K 233 (239)
Q Consensus 233 ~ 233 (239)
.
T Consensus 240 ~ 240 (257)
T PRK10619 240 F 240 (257)
T ss_pred h
Confidence 4
No 77
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-49 Score=345.83 Aligned_cols=206 Identities=18% Similarity=0.252 Sum_probs=167.9
Q ss_pred CeEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC----CCceeEEecCc--------
Q 026376 27 PIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAK-------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~~~-------- 91 (239)
++|+++||+++|+. ...+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 37999999999942 2468999999999999999999999999999999999997 58999998763
Q ss_pred -------eEEEEEeeccCCCCCCCCcHHHHHHH---h--CC-----C--CcHHHHHHHHHhcCCCc--ccccCCCCCCCh
Q 026376 92 -------VRIAVFSQHHVDGLDLSSNPLLYMMR---C--FP-----G--VPEQKLRAHLGSFGVTG--NLALQPMYTLSG 150 (239)
Q Consensus 92 -------~~~~~~~q~~~~~~~~~~~~~~~~~~---~--~~-----~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSg 150 (239)
..++|++|++...++...+....+.. . .. . ...+++.++|+.+++.+ ...++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 14999999975333333333332221 0 10 0 11346788999999964 234678899999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeC
Q 026376 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFH 226 (239)
Q Consensus 151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 226 (239)
||||||+|||||+.+|++|||||||++||+.++.++++.|++ .+.|||+||||++++.++||++++|++|+++ ..
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv-e~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV-ET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EE
Confidence 999999999999999999999999999999999988887764 3569999999999999999999999999997 56
Q ss_pred CChhHHH
Q 026376 227 GTFHDYK 233 (239)
Q Consensus 227 g~~~~~~ 233 (239)
|+.+++.
T Consensus 241 g~~~~i~ 247 (330)
T PRK15093 241 APSKELV 247 (330)
T ss_pred CCHHHHH
Confidence 7776653
No 78
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.3e-48 Score=329.33 Aligned_cols=201 Identities=23% Similarity=0.387 Sum_probs=166.1
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 97 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~ 97 (239)
+|+++|++++|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 478999999995 457999999999999999999999999999999999999999999988763 248999
Q ss_pred eeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 98 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll 171 (239)
+|++... ...+...++.. ..... ..+.+.++++.+++.. ..++++.+||||||||++|||||+.+|++|||
T Consensus 80 ~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 80 FQQPTLD--LDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-RADDKVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred CCCCCCc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9986422 22334433321 11111 2345678899999974 46788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 172 DEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||||++||+.++..+.+.+.+. +.|||++|||++++.. ||++++|++|+++ ..|+++++.+
T Consensus 157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~ 221 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVL-ADGAAAELRG 221 (236)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEE-EeCCHHHHHH
Confidence 9999999999999988877643 5699999999999975 9999999999997 5788776654
No 79
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-48 Score=348.61 Aligned_cols=204 Identities=23% Similarity=0.321 Sum_probs=171.1
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV 96 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~ 96 (239)
.++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++. ..++|
T Consensus 17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 45799999999995 457899999999999999999999999999999999999999999998774 25999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
+||++.. ....+..+++.... ... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 96 vfQ~~~l--fp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 96 MFQSYAL--FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998743 22334555443211 111 1346788999999974 5678999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 171 LDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||++||...+..+.+.++ +.+.|+|+||||.+++..+||++++|++|+++ ..|+++++..
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~~~~ 239 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV-QIGEPEEIYE 239 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE-EEcCHHHHHh
Confidence 999999999999887765443 34679999999999999999999999999997 5688887654
No 80
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-48 Score=326.86 Aligned_cols=193 Identities=29% Similarity=0.429 Sum_probs=160.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~ 93 (239)
||+++|+++.|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 4789999999943457999999999999999999999999999999999999999999987653 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
++|++|++.. ....+..+++... ..... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus 81 i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQDHHL--LMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-KAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecCccc--cccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 8999998642 2223444433211 11111 235678899999974 4578889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
+|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999998887777643 569999999999999999999999999985
No 81
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-48 Score=331.04 Aligned_cols=202 Identities=24% Similarity=0.319 Sum_probs=166.3
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 97 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~ 97 (239)
++++|++++|++...+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999964256899999999999999999999999999999999999999999988763 258999
Q ss_pred eeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 98 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
+|++... ...+..+++.. ..... ..+++.++++.+++.. ...++++.+||||||||++|||||+.+|++||
T Consensus 81 ~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 81 IQQIGLF--PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred ccCcccc--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9986322 22344443321 11111 1345778999999974 25678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 171 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||++||+.++..+.+.|.+. +.|||++|||.+++..+||++++|++|+++ ..|+++++.
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 224 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV-QVGTPDEIL 224 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence 99999999999999888877653 569999999999999999999999999997 567877664
No 82
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-49 Score=337.20 Aligned_cols=202 Identities=28% Similarity=0.382 Sum_probs=165.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~ 94 (239)
||+++|++++|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 589999999995 456999999999999999999999999999999999999999999987653 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+|++|++...+. ..+...++.. ...... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus 80 ~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 80 ATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-FRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred EEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-HhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 999998632111 1122222211 111111 234677899999964 46788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL-THGAPGEVF 224 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999888877653 569999999999999999999999999997 678887764
No 83
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.3e-49 Score=342.72 Aligned_cols=195 Identities=23% Similarity=0.321 Sum_probs=162.0
Q ss_pred EEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEeeccCCCC
Q 026376 36 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFSQHHVDGL 105 (239)
Q Consensus 36 ~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~q~~~~~~ 105 (239)
++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..++|++|++...
T Consensus 1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~- 78 (302)
T TIGR01188 1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD- 78 (302)
T ss_pred CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC-
Confidence 3573 457999999999999999999999999999999999999999999998763 2589999986422
Q ss_pred CCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376 106 DLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179 (239)
Q Consensus 106 ~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD 179 (239)
...+..+++. ...... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 79 -~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 79 -EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred -CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 2233333332 111111 1345788999999974 5678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 180 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 180 ~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
+.++..+.+.+++. +.|||++||+++++.++||++++|++|+++ +.|+++++.+.
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~l~~~ 214 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII-AEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHh
Confidence 99999888877653 569999999999999999999999999997 67998887654
No 84
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-48 Score=330.65 Aligned_cols=201 Identities=24% Similarity=0.340 Sum_probs=166.9
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~ 94 (239)
+|+++|++++|+ ++.+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|++++. ..+
T Consensus 1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 478999999995 457999999999999999999999999999999999999999999988752 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
+|++|++... ...+...++.. ..... ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 80 GMVFQQFYLF--PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-RAHHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred EEEecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-HHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 9999986322 22333333321 11111 2345678999999964 4578889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCCHHHHh
Confidence 99999999999999999888877543 579999999999999999999999999997 678887764
No 85
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-48 Score=332.01 Aligned_cols=201 Identities=22% Similarity=0.347 Sum_probs=166.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------- 91 (239)
+|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 699999999995 456999999999999999999999999999999999999999999987542
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
..++|++|++... ...+..+++.. ..... ..+++.++++.+++.. ..++++.+||||||||++||||
T Consensus 82 ~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 82 QLRQHVGFVFQNFNLF--PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-KETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HhhhhEEEEecCcccC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-hhhCChhhCChHHHHHHHHHHH
Confidence 2489999986322 22334333321 11111 1345678899999974 4578899999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|+.+|++|||||||++||+.++..+.+.+.+ .+.|||++|||.+++..+||++++|++|+++ +.|+++++.
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 232 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV-EQGPAKALF 232 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999988877654 3679999999999999999999999999997 678887764
No 86
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.5e-49 Score=327.98 Aligned_cols=200 Identities=23% Similarity=0.341 Sum_probs=163.7
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~ 96 (239)
|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 47899999995 457999999999999999999999999999999999999999999988752 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll 171 (239)
++|++.. ....+...++.. ... .....++.++++.+ ++. ...++++.+||||||||++|||||+.+|++|||
T Consensus 80 ~~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 80 VPEGRRI--FPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred ecccccc--CCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9998632 222344443321 111 11233456778877 464 345788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 172 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||++||+.++..+.+.+++. +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 220 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV-LEGTAAELL 220 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE-EeCCHHHHh
Confidence 9999999999999988887653 569999999999999999999999999997 578877654
No 87
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-48 Score=337.21 Aligned_cols=205 Identities=27% Similarity=0.425 Sum_probs=170.0
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~ 93 (239)
++|+++|++++|++++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 47999999999964456999999999999999999999999999999999999999999988763 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
++|++|++...+ +..+..+++.. ...... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus 84 ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 84 VGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred EEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999863221 12344444421 111111 345788899999974 5678999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ +.|+++++..
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999887776543 579999999999999999999999999997 6788887643
No 88
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-48 Score=324.06 Aligned_cols=191 Identities=20% Similarity=0.382 Sum_probs=159.9
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------eEEEEEeecc
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH 101 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~~~~~~q~~ 101 (239)
++++|+++.|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 47899999995 457999999999999999999999999999999999999999999998763 3589999986
Q ss_pred CCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376 102 VDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175 (239)
Q Consensus 102 ~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt 175 (239)
... ...+..+++.. .... ...+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||||
T Consensus 80 ~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 80 GLY--PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred cCC--cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 322 12233333221 1111 12346778999999964 456788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 176 NHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 176 ~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
++||+.++..+.+.+++. +.|||++|||.+++..+||++++|++|++.
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 999999999888877653 569999999999999999999999999986
No 89
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.9e-48 Score=326.27 Aligned_cols=196 Identities=24% Similarity=0.382 Sum_probs=158.7
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 91 (239)
+|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999543 26899999999999999999999999999999999999999999987652
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHH---HhCC-CCcH---HH-HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMM---RCFP-GVPE---QK-LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~-~~~~---~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral 162 (239)
..++|++|++...+....+...++. .... .... .. +.++++.+++.....++++.+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 2589999986322222233333332 1111 1111 12 247888999853456788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 9999999999999999999999888877643 579999999999999999999999999986
No 90
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.6e-48 Score=370.34 Aligned_cols=208 Identities=31% Similarity=0.580 Sum_probs=179.5
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
++++|+++||++.|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.++....++|++|+.. .
T Consensus 316 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~-~ 393 (635)
T PRK11147 316 GKIVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRA-E 393 (635)
T ss_pred CCceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCccc-c
Confidence 466899999999995 45799999999999999999999999999999999999999999999865568999999752 2
Q ss_pred CCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376 105 LDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~ 180 (239)
+....++..++..... .....++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||||||+
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 3333455555432211 111446788899999965456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEe-CCeEEeeCCChhHHHH
Q 026376 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVS-EGKATPFHGTFHDYKK 234 (239)
Q Consensus 181 ~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~-~G~i~~~~g~~~~~~~ 234 (239)
.++..+.+.++++++|||+||||++++..+||++++|+ +|++..|.|+|++|.+
T Consensus 474 ~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 474 ETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999888899999999999999999999998 8999999999999965
No 91
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-48 Score=343.89 Aligned_cols=205 Identities=20% Similarity=0.298 Sum_probs=167.4
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC----CCceeEEecCce--------
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAKV-------- 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~~~~-------- 92 (239)
+|+++||++.|+.. ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999642 359999999999999999999999999999999999997 489999987631
Q ss_pred -------EEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCc--ccccCCCCCCChHHHHHH
Q 026376 93 -------RIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTG--NLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 93 -------~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv 156 (239)
.++|++|++...++...+....+. ..... ...+++.++++.+++.+ ...++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 489999997433333333322221 11111 12356788999999964 235678999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
+|||||+.+|++||+||||++||+.++..+++.|++. +.|+|+||||++.+.++||+|++|.+|+++ ..|+.+++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~~ 241 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHDI 241 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 9999999999999999999999999999888777543 569999999999999999999999999997 56877665
Q ss_pred H
Q 026376 233 K 233 (239)
Q Consensus 233 ~ 233 (239)
.
T Consensus 242 ~ 242 (326)
T PRK11022 242 F 242 (326)
T ss_pred h
Confidence 4
No 92
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-48 Score=370.02 Aligned_cols=204 Identities=25% Similarity=0.423 Sum_probs=173.8
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 107 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 107 (239)
||.++||+++|+ ++.+|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+.+...++|++|..... .
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~-~- 77 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPAL-P- 77 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC-C-
Confidence 589999999995 5679999999999999999999999999999999999999999999998877899999964221 1
Q ss_pred CCcHHHHHH-----------------------------Hh---CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376 108 SSNPLLYMM-----------------------------RC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 154 (239)
Q Consensus 108 ~~~~~~~~~-----------------------------~~---~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 154 (239)
.+.+.++. .. .. .....++.++++.+|+.....++++.+|||||||
T Consensus 78 -~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 78 -QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred -CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 11111000 00 00 0123567889999999644567899999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||+|||||+.+|+||||||||||||+.++.++.+.|.++++|||+||||++++..+||++++|++|++..+.|+|+.|..
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999888999999975
Q ss_pred H
Q 026376 235 M 235 (239)
Q Consensus 235 ~ 235 (239)
.
T Consensus 237 ~ 237 (638)
T PRK10636 237 Q 237 (638)
T ss_pred H
Confidence 3
No 93
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.5e-48 Score=328.67 Aligned_cols=202 Identities=21% Similarity=0.362 Sum_probs=168.6
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3689999999995 457999999999999999999999999999999999999999999998763 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCC--------------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFP--------------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
+|++|++... ...+..+++..... .....++.++++.+++.+ ..++++.+|||||+|||+|||
T Consensus 80 ~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 80 GRKFQKPTVF--ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-EADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eEeccccccC--CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHH
Confidence 9999986322 22233333321100 012346788999999974 557889999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||+.+|++|||||||++||+.++..+.+.++++ +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence 999999999999999999999999998888764 469999999999999999999999999997 678888764
No 94
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-49 Score=324.74 Aligned_cols=190 Identities=21% Similarity=0.314 Sum_probs=159.2
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 98 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~ 98 (239)
|+++|++++|+ +..+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999995 457999999999999 99999999999999999999999999999998763 3589999
Q ss_pred eccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++... ...+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus 79 q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 79 QEFGVY--PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred CCCccc--ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH-HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 986422 22233333321 11111 1346778999999974 457888999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 173 EPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|||++||+.++..+.+.+.+. +.|||++|||++++.++||++++|++|+++
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999998888754 469999999999999999999999999986
No 95
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-48 Score=335.24 Aligned_cols=203 Identities=29% Similarity=0.449 Sum_probs=168.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
+++++|++++|++...+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 6899999999964456899999999999999999999999999999999999999999998763 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
++|++...+ ...+...++.. ...... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||
T Consensus 83 v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 83 VFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EecCccccc-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999863211 12244443321 111122 235778999999974 5678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 171 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||++||+.++..+.+.+++. +.|||++|||++++.++||++++|++|+++ +.|+++++.
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 226 (277)
T PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIF 226 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHh
Confidence 99999999999999888777542 569999999999999999999999999997 678888874
No 96
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-48 Score=326.14 Aligned_cols=194 Identities=26% Similarity=0.372 Sum_probs=160.0
Q ss_pred CCeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------
Q 026376 26 PPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------- 91 (239)
+++|+++|+++.|+++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 3579999999999642 46899999999999999999999999999999999999999999998762
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
..++|++|++... ...+...++.. .... ...+++.++++.+++.+ ..++++.+||||||||++||||
T Consensus 83 ~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLL--PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-RANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHH
Confidence 2489999986322 22234433321 1111 12346788999999974 4577889999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+ |++++|++|+++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~ 224 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLT 224 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEE
Confidence 99999999999999999999999888877643 56999999999999874 699999999986
No 97
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-48 Score=331.68 Aligned_cols=193 Identities=26% Similarity=0.354 Sum_probs=160.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEeecc
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHH 101 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q~~ 101 (239)
||+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|++|++
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 589999999995 4579999999999999999999999999999999999999999999987632 489999986
Q ss_pred CCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376 102 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175 (239)
Q Consensus 102 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt 175 (239)
.. ....+...++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||
T Consensus 80 ~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 80 GL--LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred cc--CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 32 222334333321 11111 1345788999999974 457888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEe--CCeEEe
Q 026376 176 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATP 224 (239)
Q Consensus 176 ~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~--~G~i~~ 224 (239)
++||+.++..+.+.|.+. +.|||++|||++++..+||++++|+ +|+++.
T Consensus 157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 999999999988877653 5699999999999999999999998 488863
No 98
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-48 Score=335.93 Aligned_cols=204 Identities=28% Similarity=0.372 Sum_probs=166.5
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
.|+++|++++|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 48999999999642 35899999999999999999999999999999999999999999988653
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral 162 (239)
..++|++|++...+. ..+...++.. ...... ...+.++++.+++.....++++.+||||||||++|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 248999998521111 1244443321 111111 234677889999964455788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+.+|++|||||||++||+.++..+.+.|++. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV-LSGKPKDIF 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999988877653 569999999999999999999999999997 568877753
No 99
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-48 Score=363.14 Aligned_cols=205 Identities=25% Similarity=0.442 Sum_probs=172.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 107 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 107 (239)
||+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+++...++|++|++.....
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~- 78 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE- 78 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC-
Confidence 589999999995 457999999999999999999999999999999999999999999999877779999998632211
Q ss_pred CCcHHHHHHH----------------hCC----------------------CCcHHHHHHHHHhcCCCcccccCCCCCCC
Q 026376 108 SSNPLLYMMR----------------CFP----------------------GVPEQKLRAHLGSFGVTGNLALQPMYTLS 149 (239)
Q Consensus 108 ~~~~~~~~~~----------------~~~----------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 149 (239)
.+..+++.. ... .....++.++++.+|+.+...++++.+||
T Consensus 79 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 79 -FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred -CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 122221110 000 01134677899999996534457889999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376 150 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 229 (239)
Q Consensus 150 gGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 229 (239)
|||||||+|||||+.+|++|||||||++||+.++.++.+.+.+.+.|||+||||++++..+||++++|++|+++.+.|++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 237 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY 237 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence 99999999999999999999999999999999999999999887889999999999999999999999999996578999
Q ss_pred hHHHHH
Q 026376 230 HDYKKM 235 (239)
Q Consensus 230 ~~~~~~ 235 (239)
++|.++
T Consensus 238 ~~~~~~ 243 (530)
T PRK15064 238 DEYMTA 243 (530)
T ss_pred HHHHHH
Confidence 988643
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-48 Score=331.05 Aligned_cols=202 Identities=22% Similarity=0.396 Sum_probs=167.0
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|+++|++++|+ +..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4799999999995 457999999999999999999999999999999999999999999998763 137
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh-------------C-----CC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC-------------F-----PG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 153 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~-------------~-----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 153 (239)
+|++|++... ...+...++... . .. .....+.++++.+++.. ..++++.+||||||
T Consensus 83 ~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQHVRLF--REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-HANRQAGNLAYGQQ 159 (255)
T ss_pred EEeccCcccC--CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-hhhCChhhCCHHHH
Confidence 8899986422 222343333210 0 00 01235677889999964 56788999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376 154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 229 (239)
Q Consensus 154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 229 (239)
||++|||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ +.|++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~ 238 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGTP 238 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCCH
Confidence 9999999999999999999999999999999888877542 569999999999999999999999999997 67888
Q ss_pred hHHH
Q 026376 230 HDYK 233 (239)
Q Consensus 230 ~~~~ 233 (239)
+++.
T Consensus 239 ~~~~ 242 (255)
T PRK11300 239 EEIR 242 (255)
T ss_pred HHHh
Confidence 7764
No 101
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-48 Score=331.20 Aligned_cols=201 Identities=26% Similarity=0.382 Sum_probs=167.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
+|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 689999999995 456999999999999999999999999999999999999999999998763 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHHhC--CC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc------c
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCF--PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF------K 164 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~------~ 164 (239)
++|++... ...+..+++.... .. ....++.++++.+++.+ ..++.+.+||||||||++|||||+ .
T Consensus 81 ~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 81 LPQHSSLS--FPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-LAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred EccCCcCC--CCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 99986422 2334444443211 11 12345778999999964 567889999999999999999999 5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|++|||||||++||+.++..+.+.+++ .+.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 229 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVL 229 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999999999999888777754 3569999999999999999999999999997 678887764
No 102
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-48 Score=331.76 Aligned_cols=201 Identities=27% Similarity=0.403 Sum_probs=167.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
+|+++|++++|+ ++.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 689999999995 457999999999999999999999999999999999999999999988763 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
++|++... ...+..+++... +. .....++.++++.+++.. ..++++.+|||||+||++||||++.+|
T Consensus 81 ~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 81 LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-LADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-HHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99986422 122333333211 11 112345778899999964 567889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++|||||||+|||+.++..+.+.+.+. +.|||++|||++++.++||++++|++|++. ..|+++++.
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 226 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEVM 226 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHhc
Confidence 999999999999999999988877643 569999999999999999999999999997 578877663
No 103
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-48 Score=334.33 Aligned_cols=203 Identities=22% Similarity=0.331 Sum_probs=168.3
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
+++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 9 ~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 9 DTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 45799999999995 457999999999999999999999999999999999999999999998763 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhC----------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCF----------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++... ...+...++.... .....+++.++++.+++.+ ..++++.+||||||||++|||||+.
T Consensus 88 ~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 88 AYLPQQLPAA--EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred EEeccCCCCC--CCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999985321 2234444432110 0112345788999999964 5678899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELM 236 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhc
Confidence 99999999999999999998887777543 579999999999999999999999999996 578877764
No 104
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.1e-48 Score=323.12 Aligned_cols=191 Identities=28% Similarity=0.408 Sum_probs=158.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI 94 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~~ 94 (239)
++++|+++.|++++.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964456999999999999999999999999999999999999999999988653 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+|++|++... ...+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus 81 ~~v~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQDFRLL--PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-KHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecCchhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 9999986322 22233333321 11111 1345778999999964 45778899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
+||||||++||+.++..+.+.+++. +.|||++|||.+++..+||++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999888877653 57999999999999999999999999974
No 105
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-48 Score=328.05 Aligned_cols=201 Identities=18% Similarity=0.260 Sum_probs=167.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------- 91 (239)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 689999999995 457999999999999999999999999999999999999999999988653
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
..++|++|++... ...+..+++.. ..... ...++.++++.+|+.. ..++++.+||||||||++|||||+
T Consensus 81 ~~~i~~~~q~~~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 81 RRNVGMVFQQYNLW--PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-YADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HhheEEEecCcccc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHh
Confidence 1489999986422 22344444321 11111 1345778899999964 567889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
.+|++|||||||++||+.++..+.+.+++ .+.|||++|||.+++..+||++++|++|++. +.|+++++.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 99999999999999999999988887764 3579999999999999999999999999997 678888764
No 106
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.1e-48 Score=323.75 Aligned_cols=192 Identities=23% Similarity=0.382 Sum_probs=157.9
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 91 (239)
+|+++|++++|+++ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 37899999999532 46999999999999999999999999999999999999999999988652
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
..++|++|++... ...+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus 81 ~~~~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQFHHLL--PDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-RINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEecccccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHh
Confidence 2489999986322 22234433321 11111 1345778999999974 457888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++.. ||++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999888877642 5699999999999875 7999999999874
No 107
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-48 Score=329.50 Aligned_cols=202 Identities=21% Similarity=0.313 Sum_probs=167.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~ 95 (239)
+++++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 689999999995 457999999999999999999999999999999999999999999988762 3589
Q ss_pred EEeeccCCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
|++|++... ...+..+++... .... ....+.++++.+++.. ..++++.+||||||||++|||||+.+|++
T Consensus 82 ~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 82 YLPQEASIF--RRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred EeccCCccc--ccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-HhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999986322 222444433211 1111 1345778899999964 45788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||||++||+.++..+.+.+. +.+.|||++|||++++..+||++++|++|+++ +.|+++++.+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 226 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI-AHGTPTEILQ 226 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE-eeCCHHHHhc
Confidence 99999999999999987766654 34679999999999999999999999999997 6788887743
No 108
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.7e-48 Score=327.33 Aligned_cols=201 Identities=19% Similarity=0.289 Sum_probs=163.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~ 96 (239)
|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 47899999995 457999999999999999999999999999999999999999999988752 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++|++... ...+...++.. .......+...++++.++......++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 80 VPQGREIF--PRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred eccCCccc--CCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99986422 22244333321 11111233456677777632234578899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~ 220 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV-ASGAGDELD 220 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHcC
Confidence 99999999999988877653 569999999999999999999999999997 678887763
No 109
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.9e-48 Score=362.86 Aligned_cols=205 Identities=23% Similarity=0.389 Sum_probs=173.9
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 105 (239)
.++|+++|+++.|++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++....++|++|++....
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 45899999999995246799999999999999999999999999999999999999999999877778999999864221
Q ss_pred CCCCcHHHHHHHh-----------------CC-C------------------------CcHHHHHHHHHhcCCCcccccC
Q 026376 106 DLSSNPLLYMMRC-----------------FP-G------------------------VPEQKLRAHLGSFGVTGNLALQ 143 (239)
Q Consensus 106 ~~~~~~~~~~~~~-----------------~~-~------------------------~~~~~~~~~l~~~~l~~~~~~~ 143 (239)
..+..+++... .. . ....++.++++.+++. . .++
T Consensus 84 --~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~~ 159 (556)
T PRK11819 84 --EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WDA 159 (556)
T ss_pred --CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-ccC
Confidence 12222222100 00 0 0134577789999995 3 578
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 144 ~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
++++|||||||||+|||||+.+|++||||||||+||+.++.++.+.|++.++|||+||||++++..+||++++|++|+++
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 89999999999999999999999999999999999999999999999988889999999999999999999999999987
Q ss_pred eeCCChhHHHH
Q 026376 224 PFHGTFHDYKK 234 (239)
Q Consensus 224 ~~~g~~~~~~~ 234 (239)
.+.|++++|.+
T Consensus 240 ~~~g~~~~~~~ 250 (556)
T PRK11819 240 PWEGNYSSWLE 250 (556)
T ss_pred EecCCHHHHHH
Confidence 68899998854
No 110
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.8e-48 Score=341.17 Aligned_cols=208 Identities=20% Similarity=0.307 Sum_probs=168.8
Q ss_pred CCCeEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCc-------
Q 026376 25 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------- 91 (239)
..++|+++|+++.|+. ...+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 3568999999999952 246899999999999999999999999999999999999996 999998763
Q ss_pred --------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCCCc----HHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 026376 92 --------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVP----EQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS 154 (239)
Q Consensus 92 --------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq 154 (239)
..++|++|++...++...+....+. ....... .+++.++++.+++.+. ..++.+++|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 2599999997433333333333221 1111111 3467788999998642 245788999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 230 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 230 (239)
||+|||||+.+|++||+||||++||+.++..+++.|.+. +.|+|+||||++.+.++||++++|++|+++ ..|+.+
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHH
Confidence 999999999999999999999999999999887766543 569999999999999999999999999997 568777
Q ss_pred HHH
Q 026376 231 DYK 233 (239)
Q Consensus 231 ~~~ 233 (239)
++.
T Consensus 248 ~i~ 250 (330)
T PRK09473 248 DVF 250 (330)
T ss_pred HHH
Confidence 654
No 111
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.2e-48 Score=327.94 Aligned_cols=202 Identities=23% Similarity=0.365 Sum_probs=163.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecCc------------eEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~------------~~~ 94 (239)
|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999995 457999999999999999999999999999999999995 799999988763 137
Q ss_pred EEEeeccCCCCCCCCcHHHHHH---HhCCC------Cc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHH
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMM---RCFPG------VP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAK 160 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~---~~~~~------~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~lar 160 (239)
+|++|++... ...+...++. ..... .. .+++.++++.+++.....++++. +||||||||++|||
T Consensus 80 ~~v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 80 FLAFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred Eeeecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 8999986432 1222322221 11000 01 24577889999996444567776 59999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChhHHHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+ ||++++|++|++. ..|+++++..
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 234 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAKE 234 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhcc
Confidence 999999999999999999999999988887654 56999999999999988 8999999999997 6788887653
No 112
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-48 Score=332.25 Aligned_cols=203 Identities=32% Similarity=0.486 Sum_probs=168.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~ 94 (239)
+|+++|++++|+++..+++|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 4789999999964456899999999999999999999999999999999999999999988763 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+|++|++...+ +..+..+++.. ..... ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++
T Consensus 81 ~~v~q~~~~~~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDDQL-FAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhhhh-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999862111 12244443321 11111 1245778999999974 56789999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII-KEGTPKEVF 225 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999888877653 569999999999999999999999999997 578888764
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.9e-48 Score=324.11 Aligned_cols=194 Identities=23% Similarity=0.311 Sum_probs=160.0
Q ss_pred CCeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------
Q 026376 26 PPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------- 91 (239)
+++|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 3579999999999642 25899999999999999999999999999999999999999999987652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
..++|++|++... ...+..+++.. .... ...+++.++++.+++.+ ..++++.+||||||||++||||
T Consensus 84 ~~~~~~i~~~~q~~~l~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLI--PTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK-RLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHhheEEEEEcccccC--CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHH
Confidence 2589999986422 22234443321 1111 12356788999999974 4577889999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|+.+|++|||||||+|||+.++..+.+.+.+. +.|||++|||++++. .||++++|++|+++
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~ 225 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQ 225 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 99999999999999999999999888877542 569999999999986 59999999999985
No 114
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5e-48 Score=327.90 Aligned_cols=201 Identities=21% Similarity=0.260 Sum_probs=166.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-----ceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~----------- 91 (239)
+|+++|++++|+ +..+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 478999999995 456899999999999999999999999999999999999998 999987653
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++... . .+..+++.. .... ...+++.++++.+++.. ...++++.+||||||||++||
T Consensus 80 ~~~~i~~v~q~~~~~--~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 156 (247)
T TIGR00972 80 LRRRVGMVFQKPNPF--P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156 (247)
T ss_pred HHhheEEEecCcccC--C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence 2489999986321 2 344443321 1111 11245778899999962 245678899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||+.+|++|||||||++||+.++..+.+.+++. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 157 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 231 (247)
T TIGR00972 157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV-EYGPTEQIF 231 (247)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999988887654 369999999999999999999999999997 678887764
No 115
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.1e-48 Score=323.64 Aligned_cols=198 Identities=23% Similarity=0.362 Sum_probs=165.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------eEEEEEeecc
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH 101 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~~~~~~q~~ 101 (239)
|+++|++++|+ ++.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 47899999995 457999999999999999999999999999999999999999999988763 2589999986
Q ss_pred CCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376 102 VDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179 (239)
Q Consensus 102 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD 179 (239)
... ...+...++.. ........++.++++.+++.+ ..++++.+|||||+||++||||++.+|++|||||||++||
T Consensus 80 ~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 80 PLY--ENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred Ccc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 322 22244443321 111234567888999999974 4678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 180 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 180 ~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
+.++..+.+.|.+. +.|||++|||++++..+||++++|++|++. ..|++.+
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~ 210 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG-YQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EecChhh
Confidence 99999988877653 569999999999999999999999999997 5666553
No 116
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-48 Score=345.38 Aligned_cols=187 Identities=24% Similarity=0.296 Sum_probs=156.1
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEEEEEeeccCCCCCC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHHVDGLDL 107 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~~~~~q~~~~~~~~ 107 (239)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++. ..++|++|++... .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~--~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM--P 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC--C
Confidence 3799999999999999999999999999999999999999999998753 2599999986422 2
Q ss_pred CCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 026376 108 SSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181 (239)
Q Consensus 108 ~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~ 181 (239)
..+..+++.. ..... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 2344443321 11111 1346778999999974 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 182 AVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 182 ~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++..+.+.|.+ .+.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 199 ~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l~ 253 (400)
T PRK10070 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEIL 253 (400)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHHH
Confidence 99988887754 3569999999999999999999999999997 578877764
No 117
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-48 Score=332.73 Aligned_cols=203 Identities=25% Similarity=0.385 Sum_probs=167.1
Q ss_pred CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
++|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 379999999999632 35999999999999999999999999999999999999999999998763 25
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
++|++|++...+ ...+..+++... ..... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus 83 i~~v~q~~~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 83 IGMVFQNPDNQF-VGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-FKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred ceEEEcChHHhc-ccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999863111 223444443211 11111 345788999999974 5678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|||||||++||+.++..+.+.+.+. +.|||++|||++++. +||++++|++|+++ ..|+++++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVE-STSTPRELF 228 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999999888877543 579999999999995 79999999999997 578887764
No 118
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-48 Score=327.28 Aligned_cols=203 Identities=20% Similarity=0.283 Sum_probs=166.4
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------- 91 (239)
+|+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 4 PPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 46899999999995 4569999999999999999999999999999999999964 68999987652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++.. +. .+..+++.. .... ...+++.++++.+++.+ ...++++.+|||||||||+
T Consensus 83 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 83 VELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred HHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 248999998632 12 244443321 1111 11345777889888843 2346788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||+.+|++|||||||++||+.++..+.+.+++. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 236 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999998888754 469999999999999999999999999997 578887764
No 119
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.7e-48 Score=353.30 Aligned_cols=206 Identities=24% Similarity=0.360 Sum_probs=176.2
Q ss_pred CCCeEEEEeeEEEcCC------C----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---
Q 026376 25 GPPIISFSDASFGYPG------G----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~------~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--- 91 (239)
..++++++||++.|.. + ..+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.+++.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4678999999999962 1 35899999999999999999999999999999999999999999998763
Q ss_pred ----------eEEEEEeeccCCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376 92 ----------VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 154 (239)
Q Consensus 92 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 154 (239)
..+-++||+++..+++..++...+... ... ...+++.++++.+++.....++++++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 258899999988888777765554321 111 123468889999999977789999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 230 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 230 (239)
|++|||||+.+|++|++|||||+||+..+..+++.|++ .+.|.||||||+.++..+||||++|++|++++ .|+.+
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE-~G~~~ 515 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE-EGPTE 515 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEE-eCCHH
Confidence 99999999999999999999999999998888877754 36799999999999999999999999999984 56544
Q ss_pred H
Q 026376 231 D 231 (239)
Q Consensus 231 ~ 231 (239)
+
T Consensus 516 ~ 516 (539)
T COG1123 516 K 516 (539)
T ss_pred H
Confidence 3
No 120
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.4e-50 Score=319.54 Aligned_cols=203 Identities=25% Similarity=0.370 Sum_probs=170.3
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|.++|+.|+|+ ++.++++|||++++||+++++|||||||||.|.++.|+.+|++|+|.+++. ..+
T Consensus 3 ~~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4689999999994 567899999999999999999999999999999999999999999998763 469
Q ss_pred EEEeeccCCCCCCCCcHHHHHHH----hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMR----CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
||+||++.-+-.+ ++.+++.. .... ....++.++|+.|.+. ...+++..+||||||+|+.|||||+.+|
T Consensus 82 gYLpQE~SIFr~L--tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 82 GYLPQEASIFRKL--TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccccccchHhhcC--cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCC
Confidence 9999997533222 33333321 1111 1233467899999997 4778999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHH---HHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEA---LIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~---l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+++||||||+|+||.+... ++..|++.+..|+++.|+..+...+|||.|++.+|++. ++|+++++.+
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~ 228 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVN 228 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhc
Confidence 9999999999999987655 45566677789999999999999999999999999997 7899998753
No 121
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-48 Score=333.81 Aligned_cols=204 Identities=24% Similarity=0.294 Sum_probs=165.2
Q ss_pred eEEEEeeEEEcCCCC----ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 28 IISFSDASFGYPGGP----ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
.|+++|++++|++.. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 589999999996432 4899999999999999999999999999999999999999999987652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
..++|++|++...+. ..+..+++. ....... .+++.++++.+++.....++++.+||||||||++||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 248999998632111 123333332 1111111 23466788999995345678899999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|+.+|++|||||||++||+.++..+.+.+.+. +.|||+||||++++.++||++++|++|+++ ..|+++++.
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 239 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEIF 239 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999887776543 569999999999999999999999999997 568877653
No 122
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.9e-48 Score=321.76 Aligned_cols=190 Identities=33% Similarity=0.511 Sum_probs=155.9
Q ss_pred EEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEE
Q 026376 30 SFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 97 (239)
Q Consensus 30 ~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~ 97 (239)
+++|++++|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999541 56899999999999999999999999999999999999999999988763 258999
Q ss_pred eeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 98 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll 171 (239)
+|++...+ ...+...++.. ..... ...++.++++.+++.. ..++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~q~~~~~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPDDQF-FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChhhhc-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99852111 12233333321 11111 1345778999999964 55788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 172 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
||||+|||+.++..+.+.+.++ +.|||++|||++++..+||++++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999988877653 5699999999999999999999999885
No 123
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-48 Score=331.36 Aligned_cols=203 Identities=27% Similarity=0.364 Sum_probs=169.0
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..+|+++|++++|+ +..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 34799999999995 456999999999999999999999999999999999999999999998763 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh-CC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC-FP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++... ...+...++... .. .....++.++++.+++.+ ..++++.+||||||||++|||||+.
T Consensus 84 ~~v~q~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 84 GLLAQNATTP--GDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-LADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred EEeeccCcCC--CCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCChHHHHHHHHHHHHhc
Confidence 9999986422 223344433211 00 011345778999999964 5678899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|++|||||||+|||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 232 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV-AQGAPKEIV 232 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999888877543 569999999999999999999999999997 678887764
No 124
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-48 Score=331.07 Aligned_cols=202 Identities=24% Similarity=0.350 Sum_probs=165.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~ 95 (239)
|++++|++++|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++. ..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 4789999999964456999999999999999999999999999999999999999999987753 2489
Q ss_pred EEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|++|++...+ ...+..+++.. ..... ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|
T Consensus 81 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863211 12234443321 11111 1345778899999964 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||||++||+.++..+.+.+++ .+.|||++|||++.+. .||++++|++|+++ +.|+++++.
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 223 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEGEPENVL 223 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999988887754 3569999999999995 69999999999997 678877754
No 125
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-48 Score=326.97 Aligned_cols=202 Identities=20% Similarity=0.257 Sum_probs=166.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------- 91 (239)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 689999999995 45699999999999999999999999999999999999974 7999988763
Q ss_pred eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHH
Q 026376 92 VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 92 ~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~lar 160 (239)
..++|++|++... ...+..+++.. .... ...+++.++++.+++.. ...++++.+||||||||++|||
T Consensus 82 ~~i~~v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 159 (250)
T PRK14247 82 RRVQMVFQIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159 (250)
T ss_pred ccEEEEeccCccC--CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence 3589999986422 22344444321 1111 11345678899999853 2356788999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus 160 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVF 233 (250)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHH
Confidence 999999999999999999999999998888754 469999999999999999999999999996 678887764
No 126
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.1e-47 Score=325.46 Aligned_cols=204 Identities=21% Similarity=0.295 Sum_probs=166.9
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC----CceeEEecCc---------eEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p----~~G~i~~~~~---------~~~ 94 (239)
+|+++|++++| + ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|++++. ..+
T Consensus 4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 68999999999 4 4689999999999999999999999999999999999999 9999988763 258
Q ss_pred EEEeeccCCCCCCCCcHHHHHH---HhC-CCCcHHHHHHHHHhcCCCcc--cccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMM---RCF-PGVPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+|++|++...+....+...... ... .....+++.++++.+++.+. ..++++.+||||||||++|||||+.+|++
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 161 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 9999986322221122222211 111 12234568889999999642 34678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||||++||+.++..+.+.|++. +.|||++||+++++..+||++++|++|++. ..|+++++.+
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 230 (254)
T PRK10418 162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV-EQGDVETLFN 230 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHhh
Confidence 9999999999999998887777543 569999999999999999999999999997 6788877643
No 127
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-48 Score=332.15 Aligned_cols=200 Identities=22% Similarity=0.273 Sum_probs=165.2
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEE
Q 026376 30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI 94 (239)
Q Consensus 30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~ 94 (239)
.++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5779999994 567899999999999999999999999999999999999999999988652 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+|++|++... ...+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus 105 ~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 105 SMVFQSFALL--PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG-WEHKYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred EEEecCcccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999986422 22334433321 11111 1345778899999964 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||||+|||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 250 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV-QVGTPEEILT 250 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999888877543 569999999999999999999999999997 5688777643
No 128
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-47 Score=359.24 Aligned_cols=211 Identities=29% Similarity=0.496 Sum_probs=177.8
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
++++++++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++...++|++|++. .
T Consensus 319 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~ 396 (552)
T TIGR03719 319 GDKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRD-A 396 (552)
T ss_pred CCeEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcc-c
Confidence 356899999999995 45799999999999999999999999999999999999999999999866667999999852 1
Q ss_pred CCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376 105 LDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~ 180 (239)
+....+...++..... .....++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 2223345554432111 111334667899999964445788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC-CeEEeeCCChhHHHHHhh
Q 026376 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE-GKATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 181 ~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~~ 237 (239)
.++..+.+.|.++++|||+||||++++..+||++++|++ |++..+.|++++|.+...
T Consensus 477 ~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~ 534 (552)
T TIGR03719 477 ETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKK 534 (552)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHH
Confidence 999999999998877999999999999999999999987 588778999999875543
No 129
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=5.9e-48 Score=328.40 Aligned_cols=201 Identities=23% Similarity=0.341 Sum_probs=165.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------------- 91 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------- 91 (239)
|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999995 457999999999999999999999999999999999999999999987652
Q ss_pred -------eEEEEEeeccCCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 026376 92 -------VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++... ...+...++... .... ..+.+.++++.+++.+ ..++.+.+|||||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLF--PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-KADHMPAQLSGGQQQRVA 156 (252)
T ss_pred hHHHHHhhCeEEEecCcccC--CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhhcChhhcCHHHHHHHH
Confidence 2489999986322 223444333210 1111 2345778899999964 567888999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999888777542 569999999999999999999999999997 678887764
Q ss_pred H
Q 026376 234 K 234 (239)
Q Consensus 234 ~ 234 (239)
+
T Consensus 236 ~ 236 (252)
T TIGR03005 236 R 236 (252)
T ss_pred c
Confidence 3
No 130
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.9e-48 Score=357.90 Aligned_cols=203 Identities=24% Similarity=0.351 Sum_probs=171.2
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 93 (239)
.++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..
T Consensus 9 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 45899999999995 457999999999999999999999999999999999999999999998763 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll 171 (239)
++|++|++.. ....+..+++..... ....+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||
T Consensus 88 i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 88 IYLVPQEPLL--FPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-DLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred EEEEeccCcc--CCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-cccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8999998642 223344444432111 122456788999999974 56788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 172 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||+|||+.++.++.+.|++. +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 228 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLS 228 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcC
Confidence 9999999999999988877653 579999999999999999999999999997 678887764
No 131
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=329.03 Aligned_cols=205 Identities=20% Similarity=0.258 Sum_probs=166.6
Q ss_pred CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376 24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 91 (239)
Q Consensus 24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------- 91 (239)
+++++|+++|++++|+ +..+|+++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+++.
T Consensus 17 ~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 17 AKEHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CCCceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 4566899999999995 4579999999999999999999999999999999999864 79999987652
Q ss_pred ------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 026376 92 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR 155 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 155 (239)
..++|++|++... . .+...++... .... ..+.+.++++.+++.. ...++++.+||||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPF-P--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred cHHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 2489999986421 1 2444443211 1111 1234667788888742 23467889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++|||||+.+|++|||||||+|||+.++..+.+.++++ +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 251 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV-EYDQTEQIF 251 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999999988888754 469999999999999999999999999997 568877664
No 132
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.6e-48 Score=321.52 Aligned_cols=190 Identities=22% Similarity=0.334 Sum_probs=157.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIA 95 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~~ 95 (239)
++++|++++|++ ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 468999999954 57999999999999999999999999999999999999999999988763 2489
Q ss_pred EEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
|++|++... ...+..+++.. ..... ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 80 MVFQQFNLF--PHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred EEecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 999986422 22333333321 11111 2345678899999964 46788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
|||||||+|||+.++..+.+.+.+. +.|||++|||++++.++||++++|++|++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999888877653 56999999999999999999999999974
No 133
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-47 Score=358.43 Aligned_cols=211 Identities=29% Similarity=0.492 Sum_probs=178.0
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
.+++|+++|+++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++...++|++|++. .
T Consensus 321 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~-~ 398 (556)
T PRK11819 321 GDKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRD-A 398 (556)
T ss_pred CCeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchh-h
Confidence 356899999999995 45799999999999999999999999999999999999999999999866668999999851 2
Q ss_pred CCCCCcHHHHHHHhC--C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376 105 LDLSSNPLLYMMRCF--P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~ 180 (239)
+....++..++.... . ......+..+++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 222334554443211 1 112334567899999964445788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC-CeEEeeCCChhHHHHHhh
Q 026376 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE-GKATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 181 ~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~~ 237 (239)
.++..+.+.|.++.+|||+||||++++..+||++++|++ |++..+.|++++|.+..+
T Consensus 479 ~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~~ 536 (556)
T PRK11819 479 ETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKK 536 (556)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHHH
Confidence 999999999998877999999999999999999999986 888778999999976543
No 134
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.2e-48 Score=342.68 Aligned_cols=194 Identities=21% Similarity=0.271 Sum_probs=161.3
Q ss_pred EEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEEEEEeec
Q 026376 36 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQH 100 (239)
Q Consensus 36 ~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~~~~~q~ 100 (239)
++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++. ..++|++|+
T Consensus 1 ~~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 1 KKT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred Ccc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 356 4567999999999999999999999999999999999999999999998762 369999998
Q ss_pred cCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 101 HVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 101 ~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
+... ...+..+++.. ..... ..+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 80 ~~l~--~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~-~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 80 FALF--PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CcCC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6432 22344444321 11111 2356788999999964 67889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 175 SNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++||+.++..+.+.+.+. +.|||+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv-~~g~~~ei~~ 219 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV-QVGTPDEILR 219 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-eeCCHHHHHh
Confidence 9999999999888776532 679999999999999999999999999997 5788887643
No 135
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.6e-48 Score=329.51 Aligned_cols=201 Identities=21% Similarity=0.300 Sum_probs=167.6
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCc------------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK------------ 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------------ 91 (239)
++|+++||++.|+ +..+|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999995 457999999999999999999999999999999999999986 499987762
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 153 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 153 (239)
..++|++|++.. ....+...++.... ......++.++++.+++.+ ..++++.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~ 158 (262)
T PRK09984 82 RKSRANTGYIFQQFNL--VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-FAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHhheEEEcccccc--ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-HHhCCccccCHHHH
Confidence 147999998632 22234444432110 0112346788999999964 56788999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376 154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 229 (239)
Q Consensus 154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 229 (239)
|||+|||||+.+|++|||||||++||+.++..+.+.|++. +.|||++|||++++..+||++++|++|++. +.|++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~ 237 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSS 237 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCH
Confidence 9999999999999999999999999999999888877653 569999999999999999999999999996 67998
Q ss_pred hHH
Q 026376 230 HDY 232 (239)
Q Consensus 230 ~~~ 232 (239)
+++
T Consensus 238 ~~~ 240 (262)
T PRK09984 238 QQF 240 (262)
T ss_pred HHh
Confidence 887
No 136
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-47 Score=325.57 Aligned_cols=203 Identities=21% Similarity=0.238 Sum_probs=166.2
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------- 91 (239)
.++|+++|++++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 45899999999995 45699999999999999999999999999999999999997 4899987652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-C----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-V----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++... ..+..+++.. .... . ..+.+.++++.+++.. ...++++.+||||||||++
T Consensus 84 ~~~~~~i~~v~q~~~~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 84 LELRRKIGMVFQTPNPF---LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred HHHhhceEEEeeccccc---cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 2489999986422 2344444321 1111 1 1345677888888731 2356788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 237 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE-EESSTDELF 237 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999988877664 469999999999999999999999999997 578887764
No 137
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-48 Score=324.95 Aligned_cols=202 Identities=19% Similarity=0.283 Sum_probs=165.1
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4799999999995 457999999999999999999999999999999999999999999987763 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh--CCC--CcHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC--FPG--VPEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
+|++|++... ...+...++... ... .....+.++++.+ ++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 83 ~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 83 AIVPEGRRVF--SRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEeccCcccC--CCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999986322 223444444321 111 1123456667777 4643 446788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||||++||+.++..+.+.+.+ .+.|||++|||++++.++||++++|++|+++ +.|+++++.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALL 225 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHh
Confidence 99999999999999888777654 3679999999999999999999999999997 678888764
No 138
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=341.15 Aligned_cols=199 Identities=22% Similarity=0.282 Sum_probs=165.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------e
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~ 92 (239)
||++ ||+++|+ +. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~-~l~k~~~-~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLG-DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeC-CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 4788 9999995 43 33 899999999999999999999999999999999999999987652 2
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
.++|++|++.. ....+...++.........+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 77 ~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 77 RIGYVFQDARL--FPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEP-LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred CEEEEcCCccc--CCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 48999998642 223344444432222233567889999999974 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||++||+.++..+.+.|++. +.|||+||||++++..+||++++|++|++. ..|+++++..
T Consensus 154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~i~~ 218 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK-AFGPLEEVWA 218 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE-EecCHHHHHh
Confidence 999999999999888777543 569999999999999999999999999997 5788887654
No 139
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=329.95 Aligned_cols=202 Identities=23% Similarity=0.280 Sum_probs=164.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEEEEee
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQ 99 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~~~~q 99 (239)
+|+++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 6999999999964467999999999999999999999999999999999999999999998763 25999999
Q ss_pred ccCCCCCCCCcHHHHHH----H---hC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 100 HHVDGLDLSSNPLLYMM----R---CF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~----~---~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
++.............+. . .. . ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 86321111111111110 0 00 0 112345678899999974 457889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||||||++||+.++..+.+.|.++ +.|||++|||++++..+||+++++ +|++. ..|+++++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~-~~g~~~~~ 228 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL-ASGPTETT 228 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHhc
Confidence 999999999999999988877653 569999999999999999999877 89986 56887765
No 140
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.1e-47 Score=327.54 Aligned_cols=200 Identities=27% Similarity=0.387 Sum_probs=167.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 97 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~ 97 (239)
|+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999995 457999999999999999999999999999999999999999999998763 248999
Q ss_pred eeccCCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 98 SQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
+|++.. ....+...++... .. ....+++.++++.+++. ...++++.+||||||||++|||||+.+|+
T Consensus 81 ~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 81 EQDSDT--AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred cccCcc--CCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 998632 2223444443211 00 01234678899999996 45678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREVL 225 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHhh
Confidence 99999999999999999888877654 569999999999999999999999999997 678887763
No 141
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-47 Score=325.45 Aligned_cols=203 Identities=22% Similarity=0.268 Sum_probs=165.8
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------- 91 (239)
.++|+++|++++|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 45899999999995 45699999999999999999999999999999999999985 8999987652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l 158 (239)
..++|++|++.. +. .+...++.. ...... ..++.++++.+++.. ...++++.+|||||||||+|
T Consensus 89 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 165 (258)
T PRK14268 89 VELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI 165 (258)
T ss_pred HHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence 248999998642 22 344443321 111111 234677899888742 23567889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||+.+|++|||||||++||+.++..+.+.+++. +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 241 (258)
T PRK14268 166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI-EFGQTRQIF 241 (258)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999999988877654 469999999999999999999999999997 568877663
No 142
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=322.62 Aligned_cols=200 Identities=27% Similarity=0.391 Sum_probs=166.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
||+++||+++|++ .. .++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 ~l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 4789999999953 32 4999999999999999999999999999999999999999998763 2589999
Q ss_pred eccCCCCCCCCcHHHHHHHhC-C-----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMRCF-P-----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++.. ....+..+++.... . ....+++.++++.+++.. ..++++.+||||||||++||||++.+|++||||
T Consensus 78 q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 78 QENNL--FSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED-LLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred ccccc--ccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 98632 22234444442111 1 112346788999999964 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|++. +.|+++++.+
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999998888777543 569999999999999999999999999997 6788887754
No 143
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.6e-47 Score=328.73 Aligned_cols=204 Identities=22% Similarity=0.328 Sum_probs=166.2
Q ss_pred eEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------
Q 026376 28 IISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~--------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------- 91 (239)
+|+++||++.|++ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 6999999999963 357999999999999999999999999999999999999999999987763
Q ss_pred ------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376 92 ------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 158 (239)
..++|++|++...+....+....+. ..... ....++.++++.+++.....++++.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 2589999986322222223333221 11111 1223578899999996445678899999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||||+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|++++.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~ 239 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVGDK 239 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe-eeCChhhc
Confidence 99999999999999999999999988887766542 569999999999999999999999999997 56776664
No 144
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-47 Score=330.73 Aligned_cols=203 Identities=27% Similarity=0.383 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
++|+++||++.|++ .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 47999999999963 346999999999999999999999999999999999999999999998773 258
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+|++|++... ....+..+++... ..... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus 84 ~~~~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 84 GMVFQNPDNQ-FVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED-FLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred EEEEeCHHHh-cccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986211 1223444444211 11111 245788999999974 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||||+|||+.++..+.+.|.+. +.|||++|||++++. .||++++|++|+++ +.|+++++.
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL-EEGTPEEIF 228 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999988877643 569999999999997 59999999999996 678877654
No 145
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-47 Score=330.77 Aligned_cols=204 Identities=24% Similarity=0.337 Sum_probs=167.3
Q ss_pred CeEEEEeeEEEcCC-----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------
Q 026376 27 PIISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~-----~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------- 91 (239)
++|+++|++++|++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 47999999999963 246999999999999999999999999999999999999999999988752
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
..++|++|++...+. ..+...++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-YRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHH
Confidence 248999998632221 1233333221 11111 1345788999999974 567889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
.+|++|||||||++||+.++..+.+.+++. +.|||++|||++++.. ||++++|++|++. ..|+++++..
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~~ 233 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIFK 233 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEE-EecCHHHHhc
Confidence 999999999999999999999988877653 5699999999999986 9999999999997 6788887643
No 146
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-47 Score=324.22 Aligned_cols=203 Identities=20% Similarity=0.213 Sum_probs=165.3
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc----------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------- 91 (239)
++|+++|+++.|+ +..+|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4799999999995 45699999999999999999999999999999999999987 4999987652
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC---C---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG---V---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~---~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++... ...+...++.. .... . ...++.++++.+++.. ...++++.+||||||||++
T Consensus 82 ~~~~~i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 82 EVRREVGMVFQYPNPF--PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred HHhhceeEEecCCccC--CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 2489999986422 22234333321 1111 1 1235677888888742 2356788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI-EVGPTRKVF 236 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999988887654 469999999999999999999999999997 578887764
No 147
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=6.3e-48 Score=365.67 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=178.4
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..++++|++|+|+.+ ..+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 359999999999755 45999999999999999999999999999999999999999999999873 469
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++. -+..+..+++....+..+.+++.+++...|..++.... ....||||||||++|||||++
T Consensus 550 g~V~Q~~~---Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 550 GYVLQDPF---LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred eEEcccch---hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 99999874 23467777776666666678888888888876554433 346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
+|+|||||||||+||+++.+.+.+.|.+.. +|+|+|||++..+. .||+|++|++|+++ .+|+.+++.+.
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv-~~gs~~ell~~ 697 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIV-EQGSHEELLAQ 697 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCcee-ccCCHHHHHHh
Confidence 999999999999999999999999998874 79999999999987 69999999999997 68999998765
No 148
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-48 Score=314.30 Aligned_cols=202 Identities=22% Similarity=0.287 Sum_probs=162.8
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc-----eeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-----G~i~~~~~--------- 91 (239)
.+.++++||++.| |.+.+|++||++|++++++|++||+|||||||||++..+..... |+|.+++.
T Consensus 5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 3568999999999 46789999999999999999999999999999999999987765 89987763
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH---hCC---CCcHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP---GVPEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~l 158 (239)
.++|++||.|.++ ..+.++++.. ... ..-.+.+++.|+...+.++ ..++.+..||||||||++|
T Consensus 84 ~~lRr~vGMVFQkPnPF---p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 84 VELRRRVGMVFQKPNPF---PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHHHheeeccCCCCC---CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 4699999997432 2445554432 111 1113456677777766433 2456778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||||+.+|+|||||||||+|||.+...+.+.+.++ ..|||+|||++..+.+++|+..++..|+++++ |+.+++
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~-g~T~~i 235 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF-GPTDKI 235 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE-cCHHhh
Confidence 99999999999999999999999887777666654 45999999999999999999999999999864 555544
No 149
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.2e-47 Score=357.52 Aligned_cols=205 Identities=24% Similarity=0.422 Sum_probs=171.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
.+++++|++++|++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++.....
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPT 82 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCC
Confidence 47999999999963457999999999999999999999999999999999999999999998777789999998643221
Q ss_pred CCCcHHHHHHHh-----------------C--CCC-----------------------cHHHHHHHHHhcCCCcccccCC
Q 026376 107 LSSNPLLYMMRC-----------------F--PGV-----------------------PEQKLRAHLGSFGVTGNLALQP 144 (239)
Q Consensus 107 ~~~~~~~~~~~~-----------------~--~~~-----------------------~~~~~~~~l~~~~l~~~~~~~~ 144 (239)
.+..+++... . ... ...++.++++.+++. . .+++
T Consensus 83 --~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~ 158 (552)
T TIGR03719 83 --KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-P-WDAD 158 (552)
T ss_pred --CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-c-ccCc
Confidence 2222222100 0 000 013455677788884 2 4688
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376 145 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATP 224 (239)
Q Consensus 145 ~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~ 224 (239)
+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++++.|||+||||++++..+||++++|++|+++.
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~ 238 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIP 238 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999887899999999999999999999999999876
Q ss_pred eCCChhHHHHH
Q 026376 225 FHGTFHDYKKM 235 (239)
Q Consensus 225 ~~g~~~~~~~~ 235 (239)
+.|++++|.+.
T Consensus 239 ~~g~~~~~~~~ 249 (552)
T TIGR03719 239 WEGNYSSWLEQ 249 (552)
T ss_pred ecCCHHHHHHH
Confidence 88999987654
No 150
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-47 Score=325.25 Aligned_cols=203 Identities=21% Similarity=0.307 Sum_probs=166.3
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------- 91 (239)
..+++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999995 4579999999999999999999999999999999999986 58999987652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++.. +. .+...++.. ...... .+++.++++.+++.. ...++++.+||||||||++
T Consensus 90 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 90 ALLRAKVGMVFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred HHHhcceEEEecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 248999998642 22 344444321 111111 245778899998742 2356788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||+.+|++|||||||++||+.++..+.+.+++. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 243 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI-EFGNTDTIF 243 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999988888754 469999999999999999999999999997 568877764
No 151
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-47 Score=316.72 Aligned_cols=189 Identities=24% Similarity=0.349 Sum_probs=157.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 99 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q 99 (239)
++++|++++|++ .. .|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 468999999953 32 3999999999999999999999999999999999999999998763 25899999
Q ss_pred ccCCCCCCCCcHHHHHHHhCC---C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 100 HHVDGLDLSSNPLLYMMRCFP---G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++.. ....+..+++..... . ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus 78 ~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 78 ENNL--FAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred cccc--CCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8642 222344444431110 1 12446788999999974 4578889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
||++||+.++..+.+.+++. +.|||++|||++++..+||++++|++|+++
T Consensus 155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 99999999999988877643 569999999999999999999999999986
No 152
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=362.37 Aligned_cols=206 Identities=20% Similarity=0.256 Sum_probs=170.0
Q ss_pred CCeEEEEeeEEEcCC----------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----
Q 026376 26 PPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~----------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---- 91 (239)
.++|+++||++.|+. ...+|++|||+|.+||+++|+|+||||||||+|+|+|+++|++|+|++++.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 468999999999952 136899999999999999999999999999999999999999999998763
Q ss_pred ----------eEEEEEeeccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376 92 ----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 154 (239)
Q Consensus 92 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 154 (239)
..++|++|++...+....+....+.. .... ...+++.++|+.+++.....++++++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 24899999864233333344443321 1111 112467889999999644567899999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 230 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 230 (239)
||+|||||+.+|++|||||||++||+.++..+++.|++ .+.|||+||||++++..+||++++|++|+++ +.|+++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~ 549 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRR 549 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHH
Confidence 99999999999999999999999999999988887743 3679999999999999999999999999997 567776
Q ss_pred HH
Q 026376 231 DY 232 (239)
Q Consensus 231 ~~ 232 (239)
++
T Consensus 550 ~i 551 (623)
T PRK10261 550 AV 551 (623)
T ss_pred HH
Confidence 65
No 153
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-47 Score=324.53 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=167.1
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc--------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-------- 91 (239)
..++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|++++.
T Consensus 16 ~~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 16 TEIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CCceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 355899999999995 45799999999999999999999999999999999999975 8999987652
Q ss_pred -----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 026376 92 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR 155 (239)
Q Consensus 92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 155 (239)
..++|++|++... . .+..+++.. .... ...+++.++++.+++.. ...++++.+||||||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 171 (267)
T PRK14235 95 VVELRARVGMVFQKPNPF-P--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR 171 (267)
T ss_pred hHHHhhceEEEecCCCCC-C--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 2489999986422 1 244444321 1111 11345678899999853 13467889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++|||||+.+|++|||||||++||+.++..+.+.|++. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 250 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV-EVGDTEKMF 250 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999999988888654 469999999999999999999999999997 578877764
No 154
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.7e-47 Score=361.00 Aligned_cols=203 Identities=27% Similarity=0.480 Sum_probs=171.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 107 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 107 (239)
+|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++...+++++|.+.....
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~- 80 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVE- 80 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCC-
Confidence 799999999995 467999999999999999999999999999999999999999999998876678888886421110
Q ss_pred CCcHHHHH---------------------------------HH------hCC-CCcHHHHHHHHHhcCCCcccccCCCCC
Q 026376 108 SSNPLLYM---------------------------------MR------CFP-GVPEQKLRAHLGSFGVTGNLALQPMYT 147 (239)
Q Consensus 108 ~~~~~~~~---------------------------------~~------~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~ 147 (239)
.....++ .. ... .....++.++++.+|+. .++++.+
T Consensus 81 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~ 156 (635)
T PRK11147 81 -GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALSS 156 (635)
T ss_pred -CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchhh
Confidence 1111100 00 000 01235678899999985 2688999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG 227 (239)
Q Consensus 148 LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 227 (239)
|||||||||+|||||+.+|+||||||||||||+.++.++.+.|+++++|||+||||++++..+||++++|++|+++.+.|
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g 236 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG 236 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999987889
Q ss_pred ChhHHHHHh
Q 026376 228 TFHDYKKML 236 (239)
Q Consensus 228 ~~~~~~~~~ 236 (239)
+|++|.++.
T Consensus 237 ~~~~~~~~~ 245 (635)
T PRK11147 237 NYDQYLLEK 245 (635)
T ss_pred CHHHHHHHH
Confidence 999987654
No 155
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-47 Score=326.37 Aligned_cols=204 Identities=27% Similarity=0.381 Sum_probs=166.2
Q ss_pred CCeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 26 PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
.++++++|+++.|++ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999952 456999999999999999999999999999999999999999999988652 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
++|++|++...+ ...+..+++.. ...... ...+.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus 85 i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 85 IGIIFQNPDNQF-IGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-YLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred eEEEEeCHHHhc-CcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999862111 12244443321 111111 234678899999964 5678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|||||||+|||+.++..+.+.+.+. +.|||++||+++++. .||++++|++|++. ..|+.+++.
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 230 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI-AQGKPKEIL 230 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999888887653 369999999999986 79999999999997 567777653
No 156
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2e-47 Score=320.17 Aligned_cols=198 Identities=20% Similarity=0.353 Sum_probs=162.0
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
+++|+++|+++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 45899999999995 457999999999999999999999999999999999999999999988763 258
Q ss_pred EEEeeccCCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
+|++|++.. + ..+..+++.. ... .....++.++++.+++.+...++++.+|||||+||++|||||+.+|++||
T Consensus 84 ~~~~q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 84 SYCAQTPTL-F--GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred EEEeccccc-c--cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998642 1 1244444321 111 12244677899999996445678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEe--CCeEEeeCCChh
Q 026376 171 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATPFHGTFH 230 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~--~G~i~~~~g~~~ 230 (239)
|||||++||+.++..+.+.+.++ +.|||++|||++++. .||++++|+ .|++ .+|+++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~--~~~~~~ 223 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEM--QEARYE 223 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchH--hhhhhc
Confidence 99999999999999888777653 569999999999996 699999996 4555 356653
No 157
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-47 Score=326.51 Aligned_cols=204 Identities=21% Similarity=0.317 Sum_probs=169.4
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-C----CceeEEecCc--------
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-P----SSGTVFRSAK-------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p----~~G~i~~~~~-------- 91 (239)
+|+++||+..|... ..+++||||+|++||++||+|+|||||||+.+.|+|+++ | .+|+|.+++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 47899999999542 368999999999999999999999999999999999998 3 5789988764
Q ss_pred -------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC-----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 026376 92 -------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG-----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS 154 (239)
Q Consensus 92 -------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq 154 (239)
..++++||++...+++..+.-..+. ..... ...+++.++|+.+++.+. ..+.++++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2699999998766665544322221 21111 124578899999999854 567899999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 230 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 230 (239)
||.||.||+.+|++||.||||++||...+.++++.|++ .+.++|+||||+..+.++||||+||..|+++ ..|+.+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV-E~g~~~ 239 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV-EEGPVE 239 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE-EeCCHH
Confidence 99999999999999999999999999998888777654 3569999999999999999999999999998 567776
Q ss_pred HH
Q 026376 231 DY 232 (239)
Q Consensus 231 ~~ 232 (239)
++
T Consensus 240 ~i 241 (316)
T COG0444 240 EI 241 (316)
T ss_pred HH
Confidence 54
No 158
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=325.63 Aligned_cols=205 Identities=20% Similarity=0.259 Sum_probs=166.8
Q ss_pred CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376 24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 91 (239)
Q Consensus 24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------- 91 (239)
.++++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 35 ~~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 35 SGETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 3567899999999995 4579999999999999999999999999999999999987 68999987652
Q ss_pred ------eEEEEEeeccCCCCCCCCcHHHHHHH---hC--CCCcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ------VRIAVFSQHHVDGLDLSSNPLLYMMR---CF--PGVPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++.. +. .+..+++.. .. .....+++.++++.+++.. ...++++.+||||||||++
T Consensus 114 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred chHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 248999998632 11 244443321 11 1112346778899998842 2356788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEE-EEeCCeEEeeCCChhHHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW-VVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~-~l~~G~i~~~~g~~~~~~ 233 (239)
|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++++..+||+++ +|++|+++ ..|+++++.
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~~ 268 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV-EFDDTDKIF 268 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHHH
Confidence 999999999999999999999999999998888765 4699999999999999999975 57999997 568777654
No 159
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.7e-48 Score=304.25 Aligned_cols=200 Identities=24% Similarity=0.341 Sum_probs=164.9
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
|+.+++|.+.|+. .+ =..+++|..||+++|+|||||||||||++|+|++.|.+|+|++++. .-++++|
T Consensus 1 ~l~L~~V~~~y~~-~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 1 MLALDDVRFSYGH-LP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred CccccceEEeeCc-ce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence 4678999999943 22 3578999999999999999999999999999999999999999874 2488999
Q ss_pred eccCCCCCCCCcHHHHHHH-hC-----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMR-CF-----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++..+- ..++..++.. .. ....+++++.++.++|+.+ ..++.+.+|||||||||||||+|+++-+|||||
T Consensus 78 QEnNLFa--HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~-~~~RLP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 78 QENNLFA--HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hccccch--hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhh-HhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence 9864322 2233333321 11 1235678899999999986 457888999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||||+|||.-+.+++..+.+ .+.|++||||.++.+.+++++++++++|+|. +.|+.+++..
T Consensus 155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~~ 219 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLS 219 (231)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHhc
Confidence 99999999988877665543 3569999999999999999999999999997 7898888754
No 160
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=6.1e-47 Score=319.22 Aligned_cols=200 Identities=23% Similarity=0.443 Sum_probs=158.9
Q ss_pred EEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 29 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
++++|++++|++ +..+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999953 356899999999999999999999999999999999999999999998763 25899
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH---------HHhc--CCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH---------LGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
++|++.. + ..+...++...........+.+. ++.+ ++.. ..++++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~~~-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQENVL-F--NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDT-IVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCchh-c--cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccc-hhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 9998632 2 23444444321111222233333 3333 3332 23567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++|||||||++||+.++..+.+.+.+. +.|||++|||++++. .||++++|++|+++ +.|+++++..
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~ 225 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIV-EQGSHDELLA 225 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999999999998888654 569999999999996 59999999999997 6788877654
No 161
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-47 Score=317.81 Aligned_cols=203 Identities=22% Similarity=0.383 Sum_probs=161.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.|+++|++++|++.+.+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3789999999964346899999999999999999999999999999999999999999998762 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
++|++.. +..+...++..........++.++++.+++.. ...++++.+|||||||||+|||||+.+|
T Consensus 82 ~~q~~~~---~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 82 VLQDTFL---FSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred ecCCchh---hhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9998632 11244444432211122334444444444321 1234567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
++|||||||++||+.++..+.+.+.+. +.|||++||+++++. .||++++|++|++. +.|+++++...
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~-~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKII-EEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEE-EeCCHHHHHhh
Confidence 999999999999999999988888764 469999999999987 59999999999997 67888877643
No 162
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=322.08 Aligned_cols=205 Identities=19% Similarity=0.262 Sum_probs=166.8
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--C---CceeEEecCc--------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK-------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~-------- 91 (239)
.+++|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.+++.
T Consensus 9 ~~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 9 KQEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred CCceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 456899999999995 4569999999999999999999999999999999999987 3 6999987653
Q ss_pred -----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-Cc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 026376 92 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-VP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv 156 (239)
..++|++|++... . .+...++.. .... .. .+++.++++.+++.+ ...++++.+||||||||+
T Consensus 88 ~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred HHHHhhceEEEecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 2489999986422 1 244443321 1111 11 234667888888742 234678899999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|||||+.+|++|||||||++||+.++..+.+.+.+. +.|||+||||++++.++||++++|++|+++ ..|+++++.+
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 243 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV-ECNDTNKMFS 243 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EECCHHHHhh
Confidence 9999999999999999999999999999988887664 469999999999999999999999999997 6788887643
No 163
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-47 Score=320.80 Aligned_cols=201 Identities=21% Similarity=0.236 Sum_probs=165.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC---CCceeEEecCc-----------eE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-----------VR 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~-----------~~ 93 (239)
+++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 689999999995 4579999999999999999999999999999999999974 79999998763 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHh--CCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHHHh
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRC--FPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~laral 162 (239)
++|++|++... . .+..+++... ... ....++.++++.+++.. ...++++.+||||||||++|||||
T Consensus 81 i~~~~q~~~l~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 81 VGMVFQQPNVF-V--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred EEEEecCCccc-c--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 89999986422 2 3444444211 111 12235678899999853 234677899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 229 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI-EFGESKEFF 229 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999998888653 669999999999999999999999999997 567777654
No 164
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-47 Score=323.96 Aligned_cols=204 Identities=28% Similarity=0.351 Sum_probs=166.1
Q ss_pred CCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 26 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
.++|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++. ..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 4589999999999643 35899999999999999999999999999999999999999999998763 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
++|++|++...+ ...+...++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus 85 i~~v~q~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPDNQF-VGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-RADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChHHhc-ccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999863111 11222222211 11111 1245678899999974 5678889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|||||||++||+.++..+.+.+++. +.|||++||+++++.. ||++++|++|++. +.|+++++.
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~~~ 230 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVY-KEGTPTEIF 230 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999888877643 5699999999999985 9999999999997 578887764
No 165
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-47 Score=321.20 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=164.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC---cCC--CceeEEecCc----------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE---LQP--SSGTVFRSAK---------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl---~~p--~~G~i~~~~~---------- 91 (239)
++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.+++.
T Consensus 2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5799999999995 45699999999999999999999999999999999997 455 5899987652
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l 158 (239)
..++|++|++... . .+...++.. ..... ..+.+.++++.+++.+ ...++++.+||||||||++|
T Consensus 81 ~~~~~i~~v~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 81 ELRKNVGMVFQRPNPF-P--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHhhheEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 2489999986321 1 244443321 11111 2245678889898853 23467889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||+.+|++|||||||+|||+.++..+.+.|++. +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~-~~~~~~~~~ 233 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV-EYDDTKKIF 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999998888754 469999999999999999999999999997 678887764
No 166
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=323.05 Aligned_cols=205 Identities=21% Similarity=0.250 Sum_probs=165.4
Q ss_pred CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376 24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 91 (239)
Q Consensus 24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------- 91 (239)
+++++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 9 ~~~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 9 SKNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCCceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3456899999999995 4569999999999999999999999999999999999987 69999987653
Q ss_pred ------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++.. +. .+..+++... .... ..+++.++++.+++.. ...++++.+||||||||++
T Consensus 88 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred CHHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH
Confidence 248999998632 11 2444443211 1111 1345667788887632 2356788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC-----------CeEEe
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE-----------GKATP 224 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~-----------G~i~~ 224 (239)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++ |+++
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~- 243 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV- 243 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE-
Confidence 999999999999999999999999999988888754 46999999999999999999999996 4565
Q ss_pred eCCChhHHH
Q 026376 225 FHGTFHDYK 233 (239)
Q Consensus 225 ~~g~~~~~~ 233 (239)
..|+++++.
T Consensus 244 ~~~~~~~~~ 252 (269)
T PRK14259 244 EFNETKKIF 252 (269)
T ss_pred EeCCHHHHH
Confidence 568887764
No 167
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=320.08 Aligned_cols=203 Identities=20% Similarity=0.230 Sum_probs=165.8
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------- 91 (239)
+++|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+++.
T Consensus 2 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 46899999999995 45699999999999999999999999999999999999875 7999987652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++.. +. .+..+++.. ..... ...++.++++.+++.+ ...++++.+||||||||++
T Consensus 81 ~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 81 VELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred HHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 248999998642 22 344443321 11111 1245667889988742 2356788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 234 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI-EFNKTEKIF 234 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEE-EeCCHHHHh
Confidence 999999999999999999999999999988887654 469999999999999999999999999997 567777653
No 168
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-47 Score=310.83 Aligned_cols=205 Identities=23% Similarity=0.353 Sum_probs=169.5
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|+++||+..|+ ...+|++|||++++||+++|+|+||+|||||||+|+|+.+|.+|+|.+++. ..+
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 5899999999994 578999999999999999999999999999999999999999999998874 369
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh-C--CC-Cc-HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC-F--PG-VP-EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~-~--~~-~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
+|+||....+ ...++.+++... + +. .. ...++++.+.|-.-.+..+++.++|||||||.+||||||+.+|++|
T Consensus 81 ~~VPegR~iF--~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 81 AYVPEGRRIF--PRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred EeCcccccch--hhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 9999975322 334455554321 1 11 11 1126667777754445678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
||||||.||-|.-.+++.+.+++. +.||++|.++..++.+++||.++|++|+++ +.|+.+++.+.
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~~ 227 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLAD 227 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhcC
Confidence 999999999999888887766543 349999999999999999999999999997 88999887643
No 169
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-46 Score=316.32 Aligned_cols=200 Identities=26% Similarity=0.346 Sum_probs=165.7
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 99 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q 99 (239)
|.++|++++|+ ++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 46899999995 457999999999999999999999999999999999999999999988763 35899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 100 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++.... ..+...++.. ..... ...++.++++.+++.+ ..++.+.+||+||+||++|||||+.+|+++||||
T Consensus 80 ~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 80 NYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG-YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred ccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 864221 2233333321 11111 2346678899999974 5678889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||++||+.++..+.+.+.++ +.|||++||+++++..+||++++|++|++. +.|+.+++.
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~-~~~~~~~~~ 219 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ-QIGTPEEIY 219 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHH
Confidence 99999999999988777543 579999999999999999999999999997 567776654
No 170
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-46 Score=320.88 Aligned_cols=202 Identities=20% Similarity=0.211 Sum_probs=164.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------- 91 (239)
+++++|++++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 6899999999954 5699999999999999999999999999999999999974 7999988652
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++... ...+...++.. .... ...+.+.++++.+++.. ...++++.+|||||||||+||
T Consensus 83 ~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 83 VRRTIGMVFQRPNPF--PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HhcceEEEccccccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 2489999985322 22344444321 1111 11235677888888742 245678899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe------CCeEEeeCCChhH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS------EGKATPFHGTFHD 231 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~ 231 (239)
|||+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|+ +|+++ +.|++++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~-~~~~~~~ 239 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV-EIDDTEK 239 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE-ecCCHHH
Confidence 9999999999999999999999999988877654 4699999999999999999999997 79997 6788877
Q ss_pred HH
Q 026376 232 YK 233 (239)
Q Consensus 232 ~~ 233 (239)
+.
T Consensus 240 ~~ 241 (258)
T PRK14241 240 IF 241 (258)
T ss_pred HH
Confidence 64
No 171
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.1e-48 Score=315.87 Aligned_cols=204 Identities=24% Similarity=0.429 Sum_probs=174.4
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------eEEEEEee
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQ 99 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~~~~~~q 99 (239)
++|++++|+++| +++.+++|+||++++|++.+++|||||||||.+|+|.|++.|++|+|.+++. .+|||+|.
T Consensus 1 ~~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPE 79 (300)
T COG4152 1 MALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79 (300)
T ss_pred CceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChh
Confidence 368999999999 5678999999999999999999999999999999999999999999999884 47999998
Q ss_pred ccCCCCCCCCcHHH---HHHHhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 100 HHVDGLDLSSNPLL---YMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 100 ~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
+.- +....++.+ +++.. .+.+ ..++..+|+++++.+ ...+++.+||-|++|++.+..+++++|+++|||
T Consensus 80 ERG--Ly~k~tv~dql~yla~L-kGm~~~e~~~~~~~wLer~~i~~-~~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 80 ERG--LYPKMTVEDQLKYLAEL-KGMPKAEIQKKLQAWLERLEIVG-KKTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred hhc--cCccCcHHHHHHHHHHh-cCCcHHHHHHHHHHHHHhccccc-cccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 863 333344433 33332 2333 356778999999985 457889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 173 EPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l---~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
||||||||-+.+.+.+.+ ++.|.|||++||.++.++++||++++|++|+.+ ..|+.+++++..
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V-~~G~v~~ir~~~ 221 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV-LYGTVEDIRRSF 221 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE-EeccHHHHHHhc
Confidence 999999999988776655 456789999999999999999999999999987 789999987743
No 172
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-47 Score=359.46 Aligned_cols=208 Identities=19% Similarity=0.301 Sum_probs=168.5
Q ss_pred CCCeEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------
Q 026376 25 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------- 91 (239)
.+++|+++|+++.|++ ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 4568999999999953 236999999999999999999999999999999999999999999976541
Q ss_pred ---------------eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc--ccccCCCCC
Q 026376 92 ---------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG--NLALQPMYT 147 (239)
Q Consensus 92 ---------------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~--~~~~~~~~~ 147 (239)
..++|++|++...+....++..++.. ..... ..+++.++++.+|+.+ ...++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 24899999863222222344333321 11111 1346778999999953 245788999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 148 LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|||||||||+|||||+.+|++|||||||++||+.++..+.+.+++ .+.|||+||||++++.++||+|++|++|+++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 999999999999999999999999999999999998887776654 2679999999999999999999999999997
Q ss_pred eeCCChhHHH
Q 026376 224 PFHGTFHDYK 233 (239)
Q Consensus 224 ~~~g~~~~~~ 233 (239)
..|+++++.
T Consensus 249 -~~g~~~~~~ 257 (623)
T PRK10261 249 -ETGSVEQIF 257 (623)
T ss_pred -ccCCHHHhh
Confidence 578887764
No 173
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-47 Score=354.19 Aligned_cols=201 Identities=22% Similarity=0.247 Sum_probs=167.9
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 5899999999995 457999999999999999999999999999999999999999999988752 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh------CCC-------CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC------FPG-------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
+|++|++... ...+..+++... ... ...+++.++++.+++.+ ..++++.+|||||||||+||||
T Consensus 83 ~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 83 GIIYQELSVI--DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-DLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred EEEeeccccc--CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHH
Confidence 9999986322 222344433211 001 01245778999999974 5678999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|+.+|++|||||||+|||+.++..+.+.+++ .+.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDV 232 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhC
Confidence 9999999999999999999999988877754 3579999999999999999999999999996 67887765
No 174
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=319.05 Aligned_cols=202 Identities=22% Similarity=0.253 Sum_probs=165.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------- 91 (239)
+|+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 799999999995 45799999999999999999999999999999999999884 8999987652
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-C----cHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-V----PEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++... . .+...++.. .... . ..+.+.++++.+++... ..++++.+||||||||++||
T Consensus 82 ~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 158 (250)
T PRK14262 82 YRKKVGMVFQKPTPF-P--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158 (250)
T ss_pred hhhhEEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence 2489999986421 2 344443321 1111 1 12346678888887532 35678899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus 159 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 234 (250)
T PRK14262 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI-EYGPTREIVE 234 (250)
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHHh
Confidence 9999999999999999999999999988887654 469999999999999999999999999997 5788877643
No 175
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-47 Score=353.78 Aligned_cols=201 Identities=20% Similarity=0.260 Sum_probs=166.5
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4799999999995 457999999999999999999999999999999999999999999988752 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHh--C----CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRC--F----PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~--~----~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++.. ....+..+++... . ... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 82 GIIHQELNL--IPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred EEEEcchhc--cCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHhc
Confidence 999998632 2223444443211 0 011 1245778999999974 4678899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
+|++|||||||++||+.++..+.+.+.+ .+.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI-AEREVADL 228 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EecCcCcC
Confidence 9999999999999999999988776654 3569999999999999999999999999996 56666543
No 176
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-46 Score=313.29 Aligned_cols=191 Identities=24% Similarity=0.348 Sum_probs=158.9
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------EEEE
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAV 96 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~~~~ 96 (239)
++++|+++|++++|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 8 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 8 APPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CcceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 456899999999995 4569999999999999999999999999999999999999999999987632 4899
Q ss_pred EeeccCCCCCCCCcHHHHHH---HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 97 FSQHHVDGLDLSSNPLLYMM---RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++|++.. ....+..+++. ........+.+.++++.+++.+ ..++++.+||||||||++||||++.+|++|||||
T Consensus 87 ~~q~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHLPGL--KADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecCccc--ccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9987532 22223443332 1111123456678899999974 4678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 174 PSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
||++||+.++..+.+.+.+. +.|||++|||.+++.++||++++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999888877643 67999999999999999999999864
No 177
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.2e-47 Score=352.36 Aligned_cols=209 Identities=25% Similarity=0.362 Sum_probs=171.6
Q ss_pred CCCeEEEEeeEEEcCC----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-Cc--------
Q 026376 25 GPPIISFSDASFGYPG----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AK-------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~----~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-~~-------- 91 (239)
+.++|+++|++++|++ ...+|+|+||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++ +.
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 3568999999999952 2469999999999999999999999999999999999999999999884 21
Q ss_pred ---------eEEEEEeeccCCCCCCCCcHHHHHHHh--C--CC-CcHHHHHHHHHhcCCCcc----cccCCCCCCChHHH
Q 026376 92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMRC--F--PG-VPEQKLRAHLGSFGVTGN----LALQPMYTLSGGQK 153 (239)
Q Consensus 92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-~~~~~~~~~l~~~~l~~~----~~~~~~~~LSgGqk 153 (239)
..++|++|++.. ....+...++... . .. ...+++.++++.+++... ..++++.+||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDL--YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred chhhHHHHhhhEEEEccCccc--CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 248999998532 2223444444211 1 11 123457788999999641 45789999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376 154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 229 (239)
Q Consensus 154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 229 (239)
|||+|||||+.+|++|||||||++||+.++..+.+.+.+ .+.|||+||||++++.++||++++|++|+++ +.|++
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~ 512 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDP 512 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCH
Confidence 999999999999999999999999999999998887753 3679999999999999999999999999997 67888
Q ss_pred hHHHHHh
Q 026376 230 HDYKKML 236 (239)
Q Consensus 230 ~~~~~~~ 236 (239)
+++.+++
T Consensus 513 ~~~~~~~ 519 (520)
T TIGR03269 513 EEIVEEL 519 (520)
T ss_pred HHHHhhc
Confidence 8877654
No 178
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.1e-47 Score=353.05 Aligned_cols=206 Identities=20% Similarity=0.323 Sum_probs=166.7
Q ss_pred CCeEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc------
Q 026376 26 PPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------ 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~------ 91 (239)
+++|+++|+++.|++ ...+|+++||+|.+||+++|+||||||||||+|+|+|+++| ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 358999999999953 24699999999999999999999999999999999999987 7999987652
Q ss_pred ---------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHHH
Q 026376 92 ---------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQK 153 (239)
Q Consensus 92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqk 153 (239)
..++|++|++...+....+....+. ..... ...+++.++++.+++.+. ..++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 2589999986322222222222221 11111 123567889999999642 34788999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376 154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 229 (239)
Q Consensus 154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 229 (239)
|||+|||||+.+|++|||||||++||+.++.++.+.+++ .+.|||+||||++++..+||+|++|++|+++ +.|++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~ 241 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRA 241 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCH
Confidence 999999999999999999999999999999998887765 3679999999999999999999999999997 56777
Q ss_pred hHH
Q 026376 230 HDY 232 (239)
Q Consensus 230 ~~~ 232 (239)
+++
T Consensus 242 ~~~ 244 (529)
T PRK15134 242 ATL 244 (529)
T ss_pred HHH
Confidence 765
No 179
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-46 Score=318.61 Aligned_cols=201 Identities=21% Similarity=0.274 Sum_probs=163.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------- 91 (239)
+|+++|+++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999995 45699999999999999999999999999999999999763 6999987652
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++.. +. .+...++.. ..... ..+++.++++.+++.. ...++++.+||||||||++||
T Consensus 82 ~~~~i~~~~q~~~~-~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 82 LRKRVGMVFQQPNP-FP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 248999998632 12 344433321 11111 2345667788887642 234678899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||+.+|++|||||||++||+.++..+.+.|++. +.|||++|||++.+..+||++++|++|+++ ..|+.+++.
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 233 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV-EFGDTVDLF 233 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999988887654 469999999999999999999999999997 567777664
No 180
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=324.78 Aligned_cols=204 Identities=27% Similarity=0.377 Sum_probs=167.3
Q ss_pred CCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc---eeEEecCc----------
Q 026376 26 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFRSAK---------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~~---------- 91 (239)
+.+|+++|+++.|++. ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++ |+|.+++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 3579999999999642 468999999999999999999999999999999999999998 89987663
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
..++|++|++...+ ...+..+++.. ...... .+++.++++.+++.+ ..++++.+|||||+||++|||||+.
T Consensus 83 ~~~ig~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-YIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHc
Confidence 25899999863111 12344444421 111122 245778899999974 5678899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|++|||||||+|||+.++..+.+.|.+. +.|||++||+++++. .||++++|++|+++ ..|+++++.
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 231 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLL-AQGSPVEIF 231 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999888877543 569999999999985 79999999999997 678887764
No 181
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=318.48 Aligned_cols=202 Identities=22% Similarity=0.308 Sum_probs=164.1
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CC---CceeEEecCc----------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QP---SSGTVFRSAK---------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p---~~G~i~~~~~---------- 91 (239)
++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|.+++.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4799999999995 456999999999999999999999999999999999985 46 5999987652
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l 158 (239)
..++|++|++.. +. .+..+++.. ..... ...++.++++.+++.. ...++++.+||||||||++|
T Consensus 83 ~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 83 DLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 248999998642 22 344444321 11111 1245667888888742 23467889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI-EYNDTKQMF 235 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999988888654 469999999999999999999999999997 578877764
No 182
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-46 Score=322.45 Aligned_cols=205 Identities=19% Similarity=0.271 Sum_probs=164.6
Q ss_pred CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376 24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 91 (239)
Q Consensus 24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------- 91 (239)
++.++|+++|++++|+ +..+|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 20 ~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 20 PKKVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CCceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 4566899999999995 4569999999999999999999999999999999999987 69999988652
Q ss_pred ------eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-c----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 026376 92 ------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR 155 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 155 (239)
..++|++|++... . .+...++.. ..... . ...+.++++.+++.. ...++++.+||||||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPF-P--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred cHHHHhhhEEEEecCCccc-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 2489999986421 1 244444321 11111 1 223455666664321 23467889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~ 254 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN-EYDDTDKIF 254 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999999988877654 469999999999999999999999999997 568877653
No 183
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=318.22 Aligned_cols=202 Identities=19% Similarity=0.249 Sum_probs=164.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--C---CceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~----------- 91 (239)
.|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+++.
T Consensus 4 ~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 4 KVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred EEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 589999999995 4579999999999999999999999999999999999986 4 6899987652
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++.. ....+...++.. ..... ..+++.++++.+++.. ...++.+.+||||||||++||
T Consensus 83 ~~~~i~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 83 IRRRVGMVFQKPNP--FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred hhccEEEEecCCCC--CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 248999998642 222233333321 11111 1245677888898853 234577899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||+.+|++|||||||++||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 235 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV-ECGETKKIF 235 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999988877654 469999999999999999999999999997 568877653
No 184
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.3e-46 Score=313.79 Aligned_cols=190 Identities=28% Similarity=0.435 Sum_probs=157.0
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
|+++|++++|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 7899999999642 46899999999999999999999999999999999999999999998763 25899
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC-----------CCCCCChHHHHHHHHHHHhccC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----------PMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGqkqrv~laral~~~ 165 (239)
++|++... . .+..+++..........++.++++.+++.+. .++ .+.+||||||||++|||||+.+
T Consensus 83 ~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 83 VPQDVTLF-Y--GTLRDNITLGAPLADDERILRAAELAGVTDF-VNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred eCCCCccc-c--chHHHHhhcCCCCCCHHHHHHHHHHcCcHHH-HHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 99986422 1 3444444322112234566778888888542 333 3469999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|++|||||||+|||+.++..+.+.|.+.. .|||++|||++++ ++||++++|++|+++
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence 99999999999999999999998887653 5999999999987 699999999999986
No 185
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.1e-46 Score=317.81 Aligned_cols=201 Identities=22% Similarity=0.373 Sum_probs=159.8
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecCc------------eE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VR 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~------------~~ 93 (239)
+|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+. +|++|+|.+++. ..
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 488999999996 456999999999999999999999999999999999995 699999988763 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHH---H---hCCC---Cc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHH
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMM---R---CFPG---VP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFA 159 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~---~---~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~la 159 (239)
++|++|++...... +...+.. . .... .. .+.+.++++.+++.+...++++. +|||||||||+||
T Consensus 80 i~~~~q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGV--SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccch--hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 88999986322111 1111110 0 0000 01 23456788888885444556665 7999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChhHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|||+.+|++|||||||++||+.++..+.+.+++ .+.|||++|||++++..+ ||++++|++|+++ +.|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHHHH
Confidence 999999999999999999999999988876654 357999999999999887 8999999999997 67888744
No 186
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=318.95 Aligned_cols=202 Identities=20% Similarity=0.289 Sum_probs=164.6
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc----------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~---------- 91 (239)
++|+++|++++|+ .+.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 3799999999995 4579999999999999999999999999999999999997 48999987653
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l 158 (239)
..++|++|++.. +. .+...++.. ..... ...++.++++.+++.. ...++++.+||||||||++|
T Consensus 82 ~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 82 ELRKEVGMVFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HhhccEEEEecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 248999998632 12 344444321 11111 1245677888888841 23467889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|++. ..|+.+++.
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 234 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI-EAGPTEEMF 234 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999998888764 569999999999999999999999999997 567776653
No 187
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=318.83 Aligned_cols=202 Identities=21% Similarity=0.307 Sum_probs=162.1
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-----ceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~----------- 91 (239)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.+++.
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 689999999995 457999999999999999999999999999999999999874 899987652
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-c----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++... ...+..+++.. ..... . .+.+.++++.+++.. ...++++.+||||||||++||
T Consensus 83 ~~~~i~~~~q~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 83 MRRRVGMVFQKPNPF--PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred hhceeEEEeccCccC--cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 2589999986422 22244444321 11111 1 223445566666531 234678899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||+.+|++|||||||++||+.++..+.+.|++. +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 235 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV-EHGPTDQLF 235 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999988888754 469999999999999999999999999997 678877764
No 188
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-47 Score=313.67 Aligned_cols=187 Identities=25% Similarity=0.316 Sum_probs=154.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VR 93 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~ 93 (239)
+++ ||+++|++ ..+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 455 99999954 444 99999999 999999999999999999999999999999987652 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHh---CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
++|++|++... ...+...++... .. ....+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|
T Consensus 77 i~~~~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 77 IGLVFQQYALF--PHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred EEEEecCCccC--CCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-HhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999986422 223344333211 10 112346788999999964 467889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
||||||+|||+.++..+.+.+.+. +.|||++|||.+++..+||++++|++|+++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999888877543 569999999999999999999999999986
No 189
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-47 Score=350.83 Aligned_cols=201 Identities=18% Similarity=0.259 Sum_probs=167.1
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCc------------e
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------V 92 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~------------~ 92 (239)
++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|++++. .
T Consensus 4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4799999999995 45799999999999999999999999999999999999996 8999988763 2
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHHh--CC--C-C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMRC--FP--G-V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~~--~~--~-~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
.++|++|++.. ....+..+++... .. . . ..+++.++++.+++.. ..++++.+|||||||||+|||||+
T Consensus 83 ~i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 83 GIAIIHQELAL--VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-NPATPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred CeEEEEecccc--CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHHHh
Confidence 48999998632 2223444443211 00 1 1 1245788999999964 567899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
.+|++|||||||++||+.++..+.+.+.+. +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 230 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI-GTRPAAGM 230 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe-eecccccC
Confidence 999999999999999999999888877553 569999999999999999999999999986 56776654
No 190
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.1e-46 Score=311.35 Aligned_cols=193 Identities=25% Similarity=0.342 Sum_probs=159.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 99 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q 99 (239)
++++|+++.|+ . .+.|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 46899999995 2 468999999999999999999999999999999999999999998763 24899999
Q ss_pred ccCCCCCCCCcHHHHHHHh----C--CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 100 HHVDGLDLSSNPLLYMMRC----F--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++... ...+..+++... . ......++.++++.+++.+ ..++++.+||||||||++|||||+.+|+++||||
T Consensus 78 ~~~~~--~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 78 ENNLF--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred cCccC--CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 86422 223444443211 1 0112346778999999964 5678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 228 (239)
||++||+.++..+.+.+.+. +.|||+|||+.+++..+||++++|++|++. ..|.
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~-~~~~ 212 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK-VVSD 212 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE-EecC
Confidence 99999999999888777543 569999999999999999999999999997 4443
No 191
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.8e-46 Score=317.95 Aligned_cols=201 Identities=22% Similarity=0.379 Sum_probs=161.1
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCce-----------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV----------- 92 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~----------- 92 (239)
+++|+++|+++.|+ +..+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|++++..
T Consensus 5 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 45799999999995 45699999999999999999999999999999999998 58999999876521
Q ss_pred -EEEEEeeccCCCCCCCCcHHHHHHHhC---------CCCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHH
Q 026376 93 -RIAVFSQHHVDGLDLSSNPLLYMMRCF---------PGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVA 157 (239)
Q Consensus 93 -~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ 157 (239)
.++|++|++... ...+...++.... .... .+++.++++.+++.....++++. .|||||||||+
T Consensus 84 ~~~~~~~q~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 84 LGIFLAFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred eeEEEEecccccc--ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 367888875321 1122222221100 0011 23467789999996334566776 59999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChh
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFH 230 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 230 (239)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+ ||++++|++|+++ +.|+++
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE-EecChh
Confidence 999999999999999999999999999988877654 57999999999999876 8999999999997 678876
No 192
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-46 Score=322.08 Aligned_cols=202 Identities=24% Similarity=0.330 Sum_probs=165.6
Q ss_pred eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
+|+++|++++|++. ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 79999999999632 35899999999999999999999999999999999999999999988763 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+|++|++...+ ...+...++.. ...... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus 84 ~~v~q~~~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 84 GMVFQNPDNQF-VGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-FKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred EEEEECHHHhh-ccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999862111 12233443321 111111 235678899999964 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||||++||+.++..+.+.+.+. +.|||++|||++++. .||++++|++|+++ ..|+++++.
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII-KEAAPSELF 228 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999888877533 679999999999997 59999999999997 578887764
No 193
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-46 Score=323.15 Aligned_cols=204 Identities=23% Similarity=0.271 Sum_probs=165.9
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc--------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------- 91 (239)
++++|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 36 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 456899999999995 4569999999999999999999999999999999999864 49999987652
Q ss_pred -----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 026376 92 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv 156 (239)
..++|++|++.. +. .+..+++.. ..... ..+.+.++++.+++.. ...++++.+||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 258999998642 11 244444431 11111 1234667888888731 234678899999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|||||+.+|++|||||||++||+.++..+.+.++++ +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~~ 269 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQLF 269 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999999998888765 359999999999999999999999999997 678877664
No 194
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=323.10 Aligned_cols=200 Identities=27% Similarity=0.408 Sum_probs=165.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC--------ceeEEecCce-------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--------SGTVFRSAKV------- 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~--------~G~i~~~~~~------- 92 (239)
||+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.+++..
T Consensus 1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 489999999995 457999999999999999999999999999999999999998 9999987631
Q ss_pred ----EEEEEeeccCCCCCCCCcHHHHHHHh-CC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376 93 ----RIAVFSQHHVDGLDLSSNPLLYMMRC-FP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 93 ----~~~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 158 (239)
.++|++|++...+ ..+..+++... .. ....+.+.++++.+++.. ..++++.+|||||||||+|
T Consensus 80 ~~~~~~~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 80 RLARLRAVLPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-LVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHhhcEEecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHH
Confidence 3789999863222 23444443221 00 012245778899999974 4578899999999999999
Q ss_pred HHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEee
Q 026376 159 AKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPF 225 (239)
Q Consensus 159 aral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~ 225 (239)
||||+ .+|++|||||||++||+.++..+.+.+.+. +.|||+||||++++..+||++++|++|+++ .
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~ 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV-A 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-E
Confidence 99999 599999999999999999999888877642 569999999999999999999999999997 5
Q ss_pred CCChhHH
Q 026376 226 HGTFHDY 232 (239)
Q Consensus 226 ~g~~~~~ 232 (239)
.|+++++
T Consensus 236 ~g~~~~~ 242 (272)
T PRK13547 236 HGAPADV 242 (272)
T ss_pred ecCHHHH
Confidence 7887765
No 195
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-46 Score=319.47 Aligned_cols=204 Identities=20% Similarity=0.241 Sum_probs=166.5
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc--------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------- 91 (239)
..++|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 17 ~~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 17 EEIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CCeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 345899999999995 4679999999999999999999999999999999999986 58999987652
Q ss_pred -----eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 026376 92 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv 156 (239)
..++|++|++.. +. .+...++... .... ...++.++++.+++.. ...++++.+||||||||+
T Consensus 96 ~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred hHHHhcceEEEecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence 248999998632 11 2444444321 1111 1245667888888842 235678899999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|||||+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 250 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI-EYDKTRNIF 250 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999999999888877654 469999999999999999999999999997 578877764
No 196
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.2e-47 Score=335.60 Aligned_cols=195 Identities=22% Similarity=0.246 Sum_probs=160.6
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEEEEE
Q 026376 33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVF 97 (239)
Q Consensus 33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~~~~ 97 (239)
|++++|+ +.. + ++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 4 ~l~~~~~-~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLG-DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEEC-CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 8999995 443 4 999999999999999999999999999999999999999987652 248999
Q ss_pred eeccCCCCCCCCcHHHHHHHh---CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 98 SQHHVDGLDLSSNPLLYMMRC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
+|++... ...+..+++... .. .....++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 81 FQEARLF--PHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred ecCCccC--CCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 9986422 223444443211 11 111345788999999974 5678999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||++||+.++..+.+.|++. +.|||+||||++++..+||++++|++|++. ..|+++++..
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 221 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA-AAGPIAEVWA 221 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-EECCHHHHhc
Confidence 99999999999888777643 569999999999999999999999999997 5788877653
No 197
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9e-47 Score=351.90 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=168.4
Q ss_pred CCCeEEEEeeEEEcCC----------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---
Q 026376 25 GPPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~----------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--- 91 (239)
++++|+++|+++.|+. ++.+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|++++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 4568999999999952 3468999999999999999999999999999999999985 8999998762
Q ss_pred -----------eEEEEEeeccCCCCCCCCcHHHHHHH---hCC---C--CcHHHHHHHHHhcCCCcccccCCCCCCChHH
Q 026376 92 -----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP---G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 152 (239)
Q Consensus 92 -----------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 152 (239)
..++|++|++...+....++..++.. ... . ...+++.++++.+++.....++++.+|||||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 24899999862122222344443321 111 1 1234677899999996334678999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376 153 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228 (239)
Q Consensus 153 kqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 228 (239)
||||+|||||+.+|++|||||||++||+.++..+++.+++ .+.|||+||||++++..+||++++|++|+++ ..|+
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~ 509 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGD 509 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcC
Confidence 9999999999999999999999999999999988887764 2579999999999999999999999999997 6788
Q ss_pred hhHHH
Q 026376 229 FHDYK 233 (239)
Q Consensus 229 ~~~~~ 233 (239)
++++.
T Consensus 510 ~~~~~ 514 (529)
T PRK15134 510 CERVF 514 (529)
T ss_pred HHHHh
Confidence 77663
No 198
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.6e-46 Score=315.59 Aligned_cols=200 Identities=26% Similarity=0.411 Sum_probs=157.6
Q ss_pred EEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 29 ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 29 l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
++++|+++.|++ +..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999964 246899999999999999999999999999999999999999999998762 2489
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc-----------CCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
|++|++.. + ..+..+++..........++.+.++.+ ++. ...++++.+|||||||||+|||||+.
T Consensus 81 ~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 81 LVSQEPVL-F--DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYD-TLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred EECCchhh-h--hhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccc-eeeccCCccCCHHHHHHHHHHHHHhc
Confidence 99998632 1 124444432211111222333333332 332 22456779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++. +||++++|++|+++ +.++.+++.+
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~ 226 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV-EQGTHDELMA 226 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE-EeCCHHHHhh
Confidence 99999999999999999999998888654 469999999999997 89999999999996 6788777654
No 199
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.1e-46 Score=362.33 Aligned_cols=202 Identities=26% Similarity=0.404 Sum_probs=173.7
Q ss_pred eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
.|+++||+|+|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 5999999999975 357999999999999999999999999999999999999999999998873 3699
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++.. +..+..+++....+..+.+++.++++..++.+... ......||||||||++|||||+++
T Consensus 557 ~v~Q~~~l---f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 557 MVDQDIFL---FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred EEecCChh---hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 99999742 34566666643333456788888888888754322 123467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++||||||||+||..+...+.+.+.+.+.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~-~~G~~~~Ll~ 700 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVV-QRGTHEELWA 700 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEE-EecCHHHHHH
Confidence 99999999999999999999999998878899999999999875 9999999999997 6899998764
No 200
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-46 Score=319.38 Aligned_cols=204 Identities=18% Similarity=0.241 Sum_probs=166.1
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc--------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------- 91 (239)
..++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 22 ~~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 22 EQTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CCcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 355899999999995 4579999999999999999999999999999999999987 48999987652
Q ss_pred -----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 026376 92 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv 156 (239)
..++|++|++... . .+..+++.. ..... ..+++.++++.+++.. ...++++.+||||||||+
T Consensus 101 ~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPF-P--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred HHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 2589999986321 1 244444321 11111 1244677888888753 234678899999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|||||+.+|++|||||||+|||+.++..+.+.+.+. +.|||++||+++++..+||++++|++|+++ ..|+++++.
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 255 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF 255 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence 9999999999999999999999999999888877654 469999999999999999999999999997 678877764
No 201
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.9e-47 Score=349.01 Aligned_cols=200 Identities=19% Similarity=0.225 Sum_probs=165.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
+|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 699999999995 456999999999999999999999999999999999999999999987542 13789
Q ss_pred EeeccCCCC-CC-----CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 97 FSQHHVDGL-DL-----SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 97 ~~q~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
++|++...+ .. ..+...++. ......+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQ--DEVKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcc--cchhHHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999753211 00 112222211 01122456788999999964 5688999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 171 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|||||++||+.++.++.+.|.++ +.|||+||||++++.++||++++|++|+++ +.|+++++
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 222 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA-ETGEREEI 222 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999988877654 569999999999999999999999999997 57887765
No 202
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-46 Score=320.23 Aligned_cols=205 Identities=20% Similarity=0.249 Sum_probs=165.7
Q ss_pred CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-------
Q 026376 24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------- 91 (239)
Q Consensus 24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~------- 91 (239)
++.++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 16 ~~~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 16 PDHSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCCceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 3456899999999995 45799999999999999999999999999999999999863 6899987652
Q ss_pred ------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++... . .+...++... ... ...+.+.++++.+++.. ...++++.+|||||||||+
T Consensus 95 ~~~~~~~~i~~v~q~~~l~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPF-P--KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred hhHHHhhcEEEEccCCccc-c--ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence 2589999986321 1 2444443211 111 12334566777777631 2346788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe---------CCeEEeeC
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS---------EGKATPFH 226 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~---------~G~i~~~~ 226 (239)
|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|+ +|+++ ..
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~-~~ 250 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV-EF 250 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE-Ee
Confidence 999999999999999999999999999998888765 4699999999999999999999997 79997 67
Q ss_pred CChhHHH
Q 026376 227 GTFHDYK 233 (239)
Q Consensus 227 g~~~~~~ 233 (239)
|+++++.
T Consensus 251 g~~~~~~ 257 (274)
T PRK14265 251 SPTEQMF 257 (274)
T ss_pred CCHHHHH
Confidence 8887764
No 203
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-46 Score=313.75 Aligned_cols=199 Identities=26% Similarity=0.319 Sum_probs=164.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 99 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q 99 (239)
|+++|++++|++ . +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++. ..++|++|
T Consensus 1 l~~~~l~~~~~~-~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKE-F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCC-c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 468999999953 3 799999999999999999999999999999999999999999998763 35899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 100 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++... ...+..+++.. ..... ..+++.++++.+++.+ ..++++.+|||||+||++||||++.+|++++|||
T Consensus 79 ~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 79 NYALF--PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH-LLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred cCccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 85322 12233333321 11111 2345678899999964 5678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||++||+.++..+.+.+++. +.|||++||+++++..+||++++|++|+++ ..|+++++.
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 218 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI-QVGKPEEVF 218 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence 99999999999988877653 569999999999999999999999999997 578877654
No 204
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-46 Score=316.19 Aligned_cols=201 Identities=19% Similarity=0.241 Sum_probs=163.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------- 91 (239)
+++++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 689999999995 45799999999999999999999999999999999999986 5999987652
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHH
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~lar 160 (239)
..++|++|++... . .+...++.. ..... ..+++.++++.+++.+ ...++++.+|||||||||+|||
T Consensus 82 ~~~i~~~~q~~~~~-~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 82 RIKVGMVFQKPNPF-P--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HhheeEEecCCCcC-c--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 2489999986422 2 344443321 11111 1234566788887742 2346788999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||+.+|++|||||||++||+.++..+.+.+.+. +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 159 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 232 (249)
T PRK14253 159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELV-EHDDTQVIF 232 (249)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999988887754 469999999999999999999999999997 578877764
No 205
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-46 Score=309.91 Aligned_cols=186 Identities=22% Similarity=0.372 Sum_probs=155.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce----------EEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVF 97 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~~~~~ 97 (239)
|++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 588999999995 4579999999999999999999999999999999999999999999987632 48899
Q ss_pred eeccCCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 98 SQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
+|++.. ....+..+++.. .......+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+++|||||
T Consensus 80 ~~~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 80 GHQPGI--KTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG-FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred CCcccc--CcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 887532 222344444321 111134567888999999964 45788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEE
Q 026376 175 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l 217 (239)
|++||+.++..+.+.|+++ +.|||++|||.+++..+.+|++++
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999998877654 579999999999999988888877
No 206
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-46 Score=313.14 Aligned_cols=201 Identities=25% Similarity=0.438 Sum_probs=160.5
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
|+++|++++|++. ..+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 26899999999999999999999999999999999999999999998763 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHH---------HHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL---------RAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
++|++... ..+..+++...........+ .++++.+ ++.. ..++++.+||||||||++|||||+.+
T Consensus 81 ~~q~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDVFLF---NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT-VIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCCeec---cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcce-eeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99986321 23444444321111122222 2334444 4443 34677899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
|++|||||||++||+.++..+.+.|.+. +.|||++|||++++.. ||++++|++|+++ ..|+++++...
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~~ 226 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV-ERGTHEELLAQ 226 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe-eeCCHHHHHHc
Confidence 9999999999999999999998888654 5699999999999976 9999999999997 67888887543
No 207
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-46 Score=320.21 Aligned_cols=205 Identities=20% Similarity=0.322 Sum_probs=166.7
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc--------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-------- 91 (239)
..++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 18 ~~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 18 AAPAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cCcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 356899999999995 46799999999999999999999999999999999999986 7999988652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHHh---CCCCcH----HHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGVPE----QKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++... . .+...++... ...... ..+.++++.+++... ..++.+.+||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPF-P--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HHHhhheEEeccCCccC-C--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 2489999986422 2 3444433211 111121 234567888888531 245778999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||+.+|++|||||||++||+.++..+.+.|.+. ..|||+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 251 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV-EEGPTEQLFS 251 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999999999999999999988877654 469999999999999999999999999997 5688877643
No 208
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.4e-46 Score=335.67 Aligned_cols=197 Identities=22% Similarity=0.241 Sum_probs=163.1
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------------e
Q 026376 32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------------V 92 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------------~ 92 (239)
.++.++| +...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|++++. .
T Consensus 28 ~~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 28 EEILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 4556677 4567899999999999999999999999999999999999999999998762 2
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
.++|++|++.. ....+..+++... .... ...++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|
T Consensus 107 ~i~~vfQ~~~l--~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~-~~~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 107 RVSMVFQKFAL--MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ-WADKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CEEEEECCCcC--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 59999998642 2223444443311 1111 2346788999999974 567889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+||||||||++||+.++..+.+.|.+ .+.|||+||||++++.++||++++|++|+++ ..|+++++.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv-~~g~~~ei~ 253 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII-QHGTPEEIV 253 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999988887754 2679999999999999999999999999997 578887764
No 209
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-46 Score=315.22 Aligned_cols=202 Identities=21% Similarity=0.262 Sum_probs=163.9
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-----ceeEEecCc----------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK---------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~---------- 91 (239)
++|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4799999999995 456999999999999999999999999999999999999997 699987542
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l 158 (239)
..++|++|++... . .+..+++.. ..... ..+.+.++++.+++.+ ...++++.+||||||||++|
T Consensus 82 ~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 82 NLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred HhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 2499999986421 1 244443321 11111 1234566777777642 23567889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||||+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 234 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLV-EYGRTGEIF 234 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEE-EeCCHHHHH
Confidence 99999999999999999999999999888877654 469999999999999999999999999997 568877654
No 210
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-46 Score=317.90 Aligned_cols=205 Identities=19% Similarity=0.264 Sum_probs=165.5
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC---------------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA--------------- 90 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~--------------- 90 (239)
.+++.++|++++|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 46899999999995 56799999999999999999999999999999999999999997765443
Q ss_pred --ceEEEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376 91 --KVRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 91 --~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l 158 (239)
+..++|++|++... ...+...++.. ...... ...+.++++.+++.. ...++++..||+|||||++|
T Consensus 87 ~~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 87 KLRKEVGMVFQQPNPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHhcceEEEccCCccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 13589999986422 22233333321 111111 234677888899852 23467889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||||+.+|+++||||||++||+.++..+.+.+.+. +.|||+|||+++++..+||++++|++|++. ..|+.+++.+
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~-~~g~~~~~~~ 241 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV-EWGSSNEIFT 241 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999988888754 469999999999999999999999999997 5687777653
No 211
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-47 Score=350.27 Aligned_cols=207 Identities=19% Similarity=0.269 Sum_probs=167.2
Q ss_pred CCCeEEEEeeEEEcC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEecCc----------
Q 026376 25 GPPIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAK---------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~--~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~---------- 91 (239)
+.++|+++|+++.|+ ++..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++.
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA 335 (506)
T ss_pred CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence 345899999999994 23468999999999999999999999999999999999998 59999998652
Q ss_pred --eEEEEEeeccC-CCCCCCCcHHHHHHH----hCC-----CC--cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 026376 92 --VRIAVFSQHHV-DGLDLSSNPLLYMMR----CFP-----GV--PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 --~~~~~~~q~~~-~~~~~~~~~~~~~~~----~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++. ..+....+..+++.. ... .. ..+++.++++.+++.....++++.+|||||||||+
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 415 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV 415 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence 23899999852 112222333333321 110 11 12457889999999533567889999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|||||+.+|++|||||||+|||+.++..+.+.+. +.+.|||++|||++++.++||++++|++|+++ ..|+++++
T Consensus 416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 492 (506)
T PRK13549 416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK-GDLINHNL 492 (506)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEeccccC
Confidence 9999999999999999999999999988877665 34679999999999999999999999999996 56776665
No 212
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.2e-46 Score=313.85 Aligned_cols=200 Identities=27% Similarity=0.326 Sum_probs=165.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 99 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q 99 (239)
++++|++++|+ ++.+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 47899999995 457999999999999999999999999999999999999999999987652 24899999
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 100 HHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++... ...+..+++.. .... ...+.+.++++.+++.+ ..++.+.+||+||+||++|||||+.+|+++||||
T Consensus 80 ~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 80 HYALF--KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred Chhhc--cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 86322 12233333321 1111 12345678899999964 5678889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||++||+.++..+.+.+.+. +.|||++||+++++..+||++++|++|+++ +.|+.+++.
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 219 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE-QIGSPDEVY 219 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE-EecCHHHHH
Confidence 99999999999988877653 579999999999999999999999999997 568877764
No 213
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-46 Score=313.37 Aligned_cols=201 Identities=26% Similarity=0.419 Sum_probs=158.5
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 97 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~ 97 (239)
++++|++++|+++..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 468999999964456899999999999999999999999999999999999999999998763 248999
Q ss_pred eeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 98 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
+|++.. + ..+...++...........+.+.++.+++.+ ...++++.+||||||||++|||||+.+|+
T Consensus 81 ~q~~~~-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 81 PQDTVL-F--NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred CCCChh-h--cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 998632 1 2345544432211222233333333333321 12345678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|||||||++||+.++..+.+.+.+. +.|||++||+.+++.. ||++++|++|++. ..|+.+++.+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~-~~~~~~~~~~ 224 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIV-ERGTHEELLA 224 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEE-eeCCHHHHhh
Confidence 99999999999999999888877654 5699999999999975 9999999999997 5788776643
No 214
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.4e-46 Score=358.61 Aligned_cols=201 Identities=25% Similarity=0.446 Sum_probs=173.8
Q ss_pred eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
.++++||+|+|++ ++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 457999999999999999999999999999999999999999999998874 3699
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++.. +..+..+++....+ .+.+++.++++..++.+.... .....||||||||++|||||+++
T Consensus 531 ~v~Q~~~l---f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 531 VVLQNGRL---MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred EEccCCcc---CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999753 34566677654333 667888999999888643321 22467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++||||||||+||+.+.+.+.+.+.+.+.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv-~~G~~~~Ll~ 673 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVV-QQGTYDELMA 673 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999998888899999999999874 9999999999997 6899988754
No 215
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.5e-46 Score=312.13 Aligned_cols=189 Identities=24% Similarity=0.329 Sum_probs=154.1
Q ss_pred eEEEEeeEEEcCC------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec--C---c-----
Q 026376 28 IISFSDASFGYPG------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--A---K----- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~--~---~----- 91 (239)
||+++|++++|++ +..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ + .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999952 1368999999999999999999999999999999999999999999886 2 1
Q ss_pred ---------eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376 92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 156 (239)
..++|++|++... ...+..+++.. ..... ..+++.++++.+++.+...++++.+||||||||+
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVI--PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEecccccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 2489999986422 22233333221 11111 1346778899999975445678999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
+|||||+.+|++|||||||++||+.++..+.+.+++. +.|||++|||.+++..+||+++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999999999999888877653 5699999999999999999998763
No 216
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-46 Score=314.64 Aligned_cols=202 Identities=23% Similarity=0.315 Sum_probs=161.8
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--C---CceeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~--------- 91 (239)
+++|+++|++++|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ | ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 45899999999995 4579999999999999999999999999999999999875 5 5899987653
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC--Cc---HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG--VP---EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~--~~---~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++.. +. .+...++.. .... .. .+++.++++.+++.. ...++++.+||||||||++
T Consensus 82 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 82 VQLRKQVGMVFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred HHhcCeEEEEECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 248999998632 12 244433321 1111 11 234566777777631 2346788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++.++||++++|++|+++ ..|++.+.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLI-EFADTKQM 234 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999999999988887654 469999999999999999999999999997 45666554
No 217
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-46 Score=315.83 Aligned_cols=201 Identities=20% Similarity=0.254 Sum_probs=162.9
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc------------
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------------ 91 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------------ 91 (239)
-+++|++++|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.+++.
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 47899999995 4578999999999999999999999999999999999986 47999988652
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++... . .+...++.. .... ...+.+.++++.+++.+. ..++++.+||||||||++||
T Consensus 85 ~~~i~~v~q~~~~~-~--~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 85 RAKVGMVFQKPNPF-P--KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred hhhEEEEecCcccc-c--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 2489999986321 1 233333321 1111 112346678999998531 34567899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||+.+|++|||||||++||+.++..+.+.|++. +.|||++|||++++..+||++++|++|+++ +.|+++++.+
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 237 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV-EYNTTQEIFK 237 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999999999888887654 569999999999999999999999999997 5688877643
No 218
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-46 Score=317.82 Aligned_cols=203 Identities=21% Similarity=0.229 Sum_probs=164.0
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------- 91 (239)
.++|+++|++++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 8 ~~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 8 ETVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred ceEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 35899999999995 4578999999999999999999999999999999999986 48999987652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++.. +. .+...++... ... ...+++.++++.+++.. ...++++.+||||||||++||
T Consensus 87 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 87 VEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred HHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 248999998632 11 2444443211 111 11234566777777632 234678899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe---------CCeEEeeCCC
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS---------EGKATPFHGT 228 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~---------~G~i~~~~g~ 228 (239)
|||+.+|++|||||||++||+.++..+.+.+.++ +.|||++|||++++.++||++++|+ +|+++ ..|+
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~ 242 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDR 242 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE-EeCC
Confidence 9999999999999999999999999998888654 3699999999999999999999998 79997 6788
Q ss_pred hhHHH
Q 026376 229 FHDYK 233 (239)
Q Consensus 229 ~~~~~ 233 (239)
++++.
T Consensus 243 ~~~~~ 247 (264)
T PRK14243 243 TEKIF 247 (264)
T ss_pred HHHHH
Confidence 87764
No 219
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.2e-46 Score=352.15 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=170.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
-++++||++.|.+++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+++. ..++|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 4999999987655567999999999999999999999999999999999999 99999998873 36999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p 166 (239)
++|++.. +..+..+++....+..+++++.++++..++.+... ......||||||||++|||||+++|
T Consensus 428 v~Q~~~L---F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 428 VGQNPQL---PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred ecCCCcC---CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999752 34566777654334567788888888877653221 1234679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
++||||||||+||.++.+.+.+.+.+. ++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~-e~G~~~eL~~ 572 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIV-QQGDYAELSQ 572 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEe-ecCCHHHHHh
Confidence 999999999999999999999988765 569999999999886 59999999999997 6899888754
No 220
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.2e-46 Score=346.80 Aligned_cols=203 Identities=22% Similarity=0.311 Sum_probs=164.9
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecC----------------
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSA---------------- 90 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~---------------- 90 (239)
|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+|+|+|++ +|++|+|.+++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 47899999995 457999999999999999999999999999999999997 79999998751
Q ss_pred ----------------------------ceEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCC
Q 026376 91 ----------------------------KVRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGV 136 (239)
Q Consensus 91 ----------------------------~~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l 136 (239)
+..++|++|++...+ ...+...++.. ..... ..+++.++++.+++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALY-GDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 124899999732111 11233333321 11111 13467789999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcC
Q 026376 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVE 212 (239)
Q Consensus 137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d 212 (239)
.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.+.+ .+.|||+||||++++..+||
T Consensus 159 ~~-~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 159 SH-RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred hh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 64 56788999999999999999999999999999999999999999998776654 35699999999999999999
Q ss_pred eEEEEeCCeEEeeCCChhHHHHH
Q 026376 213 ELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 213 ~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
++++|++|+++ +.|+++++.+.
T Consensus 238 ~i~~l~~G~i~-~~g~~~~~~~~ 259 (520)
T TIGR03269 238 KAIWLENGEIK-EEGTPDEVVAV 259 (520)
T ss_pred EEEEEeCCEEe-eecCHHHHHHH
Confidence 99999999997 57898887654
No 221
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.3e-46 Score=305.09 Aligned_cols=173 Identities=33% Similarity=0.555 Sum_probs=142.8
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCC
Q 026376 30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 109 (239)
Q Consensus 30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~ 109 (239)
+++|++++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++... ...
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~---------~~~---- 66 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL---------ASL---- 66 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---------CcC----
Confidence 47899999954 5699999999999999999999999999999999999999999998876310 000
Q ss_pred cHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 026376 110 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 189 (239)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 189 (239)
.... .... -..+.++++.+++.+ ..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.
T Consensus 67 ~~~~-~~~~-----i~~~~q~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 139 (180)
T cd03214 67 SPKE-LARK-----IAYVPQALELLGLAH-LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139 (180)
T ss_pred CHHH-HHHH-----HhHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 0000 0000 001112788899874 45678899999999999999999999999999999999999999988887
Q ss_pred Hhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 190 LVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 190 l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
+.+. +.|||++||+++++..+||++++|++|++.
T Consensus 140 l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7643 569999999999999999999999999986
No 222
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4.7e-46 Score=298.12 Aligned_cols=164 Identities=26% Similarity=0.374 Sum_probs=143.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 108 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 108 (239)
++++|++++|++++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++...++|++|++.. ..
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~---~~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL---PL 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc---cc
Confidence 468999999964456999999999999999999999999999999999999999999999887889999998631 12
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376 109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188 (239)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 188 (239)
.+..+++.. . ++.+||||||||++|||||+.+|+++||||||++||+.++..+.+
T Consensus 78 ~tv~~nl~~-----------------~--------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 78 GTLREQLIY-----------------P--------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred ccHHHHhhc-----------------c--------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence 233333210 0 357999999999999999999999999999999999999999999
Q ss_pred HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 189 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 189 ~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
.+.+.+.|+|++|||.++. .+||++++|+++.
T Consensus 133 ~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 133 LLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred HHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 9988888999999999876 5899999998764
No 223
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-46 Score=339.65 Aligned_cols=201 Identities=28% Similarity=0.435 Sum_probs=171.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.++++|+++.|++++++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+++. ..++|
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 3556699999987768999999999999999999999999999999999999999999999873 35999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc-----C----CCCCCChHHHHHHHHHHHhccCCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----Q----PMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~----~~~~LSgGqkqrv~laral~~~p~ 167 (239)
++|+++. +..+..+++....+..+++++.++++..++.+.... . ....|||||+|||++||||+.+++
T Consensus 400 v~Q~p~l---f~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 400 VSQNPYL---FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eCCCCcc---ccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 9999853 344556666544455678889999999888654332 1 234599999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++||||||+|||.++.+.+.+.+.+. ++|+|++||++..+.. ||+|++|++|+++ ..|+++++.
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~-~~g~~~~L~ 542 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLV-EQGTHEELS 542 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCcee-ccCCHHHHh
Confidence 99999999999999999988888654 5799999999999975 9999999999997 689888764
No 224
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.8e-46 Score=339.30 Aligned_cols=207 Identities=21% Similarity=0.320 Sum_probs=173.8
Q ss_pred CeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC----ceeEEecCc--------
Q 026376 27 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS----SGTVFRSAK-------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~----~G~i~~~~~-------- 91 (239)
++|+++||++.|... ..+++||||+|.+||++||+|+|||||||+.++|+|++++. +|+|.++++
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999999532 25899999999999999999999999999999999999987 899988774
Q ss_pred -------eEEEEEeeccCCCCCCCCcHHHHH---HHhCC----CCcHHHHHHHHHhcCCCcccc-cCCCCCCChHHHHHH
Q 026376 92 -------VRIAVFSQHHVDGLDLSSNPLLYM---MRCFP----GVPEQKLRAHLGSFGVTGNLA-LQPMYTLSGGQKSRV 156 (239)
Q Consensus 92 -------~~~~~~~q~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGqkqrv 156 (239)
..++|+||++...++...+.-..+ ..... ....+++.++|+.+++.+... ++++++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 369999999876665543332222 22222 123567888999999986554 358999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
.||+||+.+|++||+||||++||+..+.++++.|++ .+.++|+||||+..+.++||||++|++|+++ ..|+++++
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV-E~G~~~~i 242 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV-ETGPTEEI 242 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE-EecCHHHH
Confidence 999999999999999999999999999998887764 3568999999999999999999999999998 57888876
Q ss_pred HH
Q 026376 233 KK 234 (239)
Q Consensus 233 ~~ 234 (239)
.+
T Consensus 243 ~~ 244 (539)
T COG1123 243 LS 244 (539)
T ss_pred Hh
Confidence 54
No 225
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=5e-46 Score=313.80 Aligned_cols=185 Identities=27% Similarity=0.363 Sum_probs=149.2
Q ss_pred EEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEeeccCCCC
Q 026376 36 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFSQHHVDGL 105 (239)
Q Consensus 36 ~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~q~~~~~~ 105 (239)
+.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|+.. .+
T Consensus 29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 106 (236)
T cd03267 29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT-QL 106 (236)
T ss_pred ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcc-cc
Confidence 455 3456999999999999999999999999999999999999999999988763 25788874421 11
Q ss_pred CCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376 106 DLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179 (239)
Q Consensus 106 ~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD 179 (239)
....+..+++. ...... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 12223333221 111111 1235677889999964 4578889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 180 LDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 180 ~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
+.++..+.+.+.++ +.|||+||||++++..+||++++|++|+++
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 99999998887654 469999999999999999999999999986
No 226
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.7e-46 Score=345.64 Aligned_cols=200 Identities=18% Similarity=0.295 Sum_probs=163.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCc------------eE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------VR 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~------------~~ 93 (239)
+|+++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.+++. ..
T Consensus 1 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 478999999995 45799999999999999999999999999999999999987 7999998762 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHh--CC--C--C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRC--FP--G--V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~--~--~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
++|++|++.. ....+..+++... .. . . ..+++.++++.+++.....++++.+|||||||||+|||||+
T Consensus 80 i~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 80 IVIIHQELTL--VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred EEEEeecccc--CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 8999998632 2223444433211 10 0 1 12457789999999754345778999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
.+|++|||||||+|||+.++..+.+.|++ .+.|||+||||++++..+||++++|++|+++ ..+++++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 227 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV-ATKDMST 227 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe-eecCccc
Confidence 99999999999999999999998887654 3569999999999999999999999999986 4565544
No 227
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=315.67 Aligned_cols=202 Identities=21% Similarity=0.226 Sum_probs=164.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-----ceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~----------- 91 (239)
+|+++|++++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 7 ~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 7 AIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred eEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 699999999995 456899999999999999999999999999999999999985 788876542
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++.. +. .+..+++... .... ...++.++++.+++.+ ...++++.+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 86 LRRQVSMVHPKPNL-FP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred hhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 248899998532 22 3444433211 1111 1235677888888742 235678899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeC-----CeEEeeCCChh
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE-----GKATPFHGTFH 230 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~-----G~i~~~~g~~~ 230 (239)
|||+.+|++|||||||++||+.++..+.+.+.+ .+.|||+||||++++.++||++++|++ |+++ ..|+++
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~ 241 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGLTK 241 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCCHH
Confidence 999999999999999999999999988887764 267999999999999999999999999 9997 678888
Q ss_pred HHHH
Q 026376 231 DYKK 234 (239)
Q Consensus 231 ~~~~ 234 (239)
++.+
T Consensus 242 ~~~~ 245 (261)
T PRK14258 242 KIFN 245 (261)
T ss_pred HHHh
Confidence 7643
No 228
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8e-46 Score=305.38 Aligned_cols=185 Identities=22% Similarity=0.375 Sum_probs=155.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 98 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~ 98 (239)
|+++|+++.|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 47899999995 457899999999999999999999999999999999999999999987653 2589999
Q ss_pred eccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376 99 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L 178 (239)
|++.. ....+..+++.........+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++|
T Consensus 80 q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 80 HAPGI--KTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred ccccc--CCCcCHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 87532 223344444432211224567888999999974 457889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEE
Q 026376 179 DLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 179 D~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l 217 (239)
|+.++..+.+.+.+. +.|+|++|||...+..+|++++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999998887653 679999999999888899999877
No 229
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-45 Score=308.18 Aligned_cols=194 Identities=23% Similarity=0.361 Sum_probs=158.8
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
++++|++++|++. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 7899999999643 46999999999999999999999999999999999999999999988763 25899
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
++|++.. +..+..+++.. .......++.++++.+++.+.. .++++..||+|||||++|||||+.+|
T Consensus 83 ~~q~~~l---~~~tv~enl~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 83 IPQDPVL---FSGTIRSNLDP-FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred ECCCCcc---ccchHHHHhCc-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9998642 12344444421 1123345566677777664322 13578999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 228 (239)
+++||||||++||+.++..+.+.+++. +.|||++||+++++.. ||++++|++|+++ ..|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~-~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVV-EFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEE-ecCC
Confidence 999999999999999999998888764 4699999999999975 9999999999996 4454
No 230
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.3e-45 Score=307.98 Aligned_cols=190 Identities=26% Similarity=0.363 Sum_probs=156.1
Q ss_pred EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376 29 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 91 (239)
Q Consensus 29 l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 91 (239)
++++|+++.|+++ ..+|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999532 56999999999999999999999999999999999999999999988653
Q ss_pred eEEEEEeeccCCCCCCCCcHHHHHH--H-hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 92 VRIAVFSQHHVDGLDLSSNPLLYMM--R-CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 92 ~~~~~~~q~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
..++|++|++.... ..+..+++. . ..... ...++.++++.+++.+ ..++++.+||+|||||++|||||+.
T Consensus 82 ~~i~~~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 82 RNIGYIFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD-HLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred hheEEEcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhc
Confidence 24899999864222 223333322 1 11111 1345788999999964 5577889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
+|++|||||||++||+.++..+.+.|+++ +.|||++|||++.. .+||++++|++|++
T Consensus 159 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 99999999999999999998887777542 57999999999865 69999999999985
No 231
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.3e-46 Score=306.58 Aligned_cols=182 Identities=25% Similarity=0.377 Sum_probs=149.4
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------------EEE
Q 026376 31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------RIA 95 (239)
Q Consensus 31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------------~~~ 95 (239)
++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. .++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 478999995 4579999999999999999999999999999999999999999999876532 489
Q ss_pred EEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|++|++... ...+..+++.. .... ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 80 ~~~q~~~~~--~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 80 YLFQNFALI--ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL-KLKQKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred EEecchhhc--cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchh-hhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999986422 22233333221 1111 12356788999999964 557888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEE
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l 217 (239)
||||||++||+.++..+.+.+++. +.|||++||+++++. +||++++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 999999999999999998888654 569999999999774 79999875
No 232
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=312.84 Aligned_cols=203 Identities=19% Similarity=0.238 Sum_probs=163.6
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--C---CceeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~--------- 91 (239)
.++|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+.+ | ++|+|.+++.
T Consensus 4 ~~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 45899999999995 4579999999999999999999999999999999999976 3 4899987652
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 157 (239)
..++|++|++.. +. .+..+++.. ..... ....+.++++.+++.+ ...++++.+||||||||++
T Consensus 83 ~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 83 VALRRKIGMVFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred hhhhceEEEEecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 248999998642 12 244443321 11111 1234667788887742 2246788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||+.+|+++||||||+|||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 236 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI-EFDKTTQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE-EcCCHHHHH
Confidence 999999999999999999999999999888877654 469999999999999999999999999997 578877764
No 233
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=300.86 Aligned_cols=202 Identities=23% Similarity=0.297 Sum_probs=168.2
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 91 (239)
+.|+++|+.++|+ ...+|++||++-++|+++.|||.+||||||+||||+=+..|+.|.|..++.
T Consensus 5 ~~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 4689999999994 556899999999999999999999999999999999999999999987652
Q ss_pred ---------eEEEEEeeccCCCCCCCCcHHHHHHHh-------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 026376 92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMRC-------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 155 (239)
Q Consensus 92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 155 (239)
.+++++||++.. ....+.+++.... ......++++.+|.++|+.+ ..+.++..|||||+||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNL--WsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e-k~~~YP~~LSGGQQQR 160 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNL--WSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE-KADAYPAHLSGGQQQR 160 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcch--hHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh-hhhcCccccCchHHHH
Confidence 247888887521 1123444444321 11223466788999999975 4568889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHH---HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 156 v~laral~~~p~llllDEPt~~LD~~~~~~l---~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
++|||||+.+|+++|+|||||+|||+-..++ ++.|.+.+.|+++|||.+.|+..+++++++|++|.+. ..|+|+++
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE-E~G~P~qv 239 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE-EEGPPEQV 239 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec-ccCChHHH
Confidence 9999999999999999999999999976554 5566777899999999999999999999999999995 78999886
Q ss_pred H
Q 026376 233 K 233 (239)
Q Consensus 233 ~ 233 (239)
.
T Consensus 240 f 240 (256)
T COG4598 240 F 240 (256)
T ss_pred h
Confidence 4
No 234
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=9e-46 Score=311.03 Aligned_cols=189 Identities=24% Similarity=0.366 Sum_probs=153.5
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC----CceeEEecCc---------eEEEEEeeccCCCCCCCCc
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VRIAVFSQHHVDGLDLSSN 110 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p----~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~ 110 (239)
+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++. ..++|++|++...+....+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 8999998763 3689999986311222222
Q ss_pred HHHHHH---HhCCC---CcHHHHHHHHHhcCCCc--ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376 111 PLLYMM---RCFPG---VPEQKLRAHLGSFGVTG--NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182 (239)
Q Consensus 111 ~~~~~~---~~~~~---~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~ 182 (239)
...++. ..... ...+++.++++.+++.+ ...++++.+|||||||||+|||||+.+|++|||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 222211 11111 12345788999999963 34578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 183 VEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 183 ~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+..+.+.+.+. +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 214 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV-ERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 98887777642 569999999999999999999999999997 678887764
No 235
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-46 Score=342.96 Aligned_cols=193 Identities=26% Similarity=0.362 Sum_probs=162.1
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++. ..+
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4799999999995 456999999999999999999999999999999999999999999988652 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhC----CC-C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCF----PG-V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~----~~-~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
+|++|++.. ....+...++.... .. . ..+++.++++.+++.. ..++++.+|||||||||+|||||+.+
T Consensus 82 ~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 82 AIIYQELHL--VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-DPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred EEEEechhc--cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-CcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 999998632 22234444432210 01 1 1346778999999964 45788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|++|||||||++||+.++.++.+.+.+ .+.|||+||||++++..+||++++|++|+++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999998887764 3579999999999999999999999999986
No 236
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-45 Score=305.76 Aligned_cols=186 Identities=28% Similarity=0.384 Sum_probs=154.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------EEEEEee
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQ 99 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~~~~~~q 99 (239)
+|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. .++|++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 689999999995 4568999999999999999999999999999999999999999999987642 4788887
Q ss_pred ccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376 100 HHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~ 177 (239)
+... ....+...++.. .......+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||||++
T Consensus 81 ~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 81 RNAM--KPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CCcC--CCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 6532 222344443321 111233456889999999975 55788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 178 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 178 LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
||+.++..+.+.|.+. +.|||++||+.+++.. |+++.++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999988877653 6799999999999986 99988854
No 237
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-46 Score=301.41 Aligned_cols=203 Identities=27% Similarity=0.405 Sum_probs=166.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
||+.+|++++.. ++.+++++||++.+||+++|+||||||||||||.|+|...|++|++.+++. ...+.
T Consensus 1 mi~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 588999999995 467999999999999999999999999999999999999999999998874 24788
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCC---C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc------
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFP---G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK------ 164 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~------ 164 (239)
++|+....|.++......+.+.-. . .+.+-++++|...++.+ +..+...+|||||||||.+||+|++
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~-la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG-LAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-hhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 999876555544333333322111 1 12223678999999975 5678889999999999999999975
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++++|+||||||+||+..+..+++..+ +.+..|+.|-||++.+..+||||++|.+|+++ ..|++++..
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~-a~g~p~~vl 229 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI-ASGSPQDVL 229 (259)
T ss_pred CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe-ecCCHHHhc
Confidence 456999999999999998877766554 44678999999999999999999999999997 689887753
No 238
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-45 Score=313.77 Aligned_cols=202 Identities=22% Similarity=0.235 Sum_probs=164.4
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc----------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------- 91 (239)
.+|+++|+++.|+ +..+|+|+||+|.+||+++|+|+||||||||+|+|+|+++| ++|+|.+++.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 3699999999995 45699999999999999999999999999999999999985 4899987653
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHHH---hC---CCC-cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CF---PGV-PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~---~~---~~~-~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l 158 (239)
..++|++|++... . .+..+++.. .. ... ..+.+.++++.+++.. ...++++.+||||||||++|
T Consensus 85 ~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 85 RLRRQIGMVFQRPNPF-P--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred hhhhheEEEecccccC-C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 2489999986422 2 344444321 11 111 1234667888888742 24567889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe-----CCeEEeeCCChhH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS-----EGKATPFHGTFHD 231 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~-----~G~i~~~~g~~~~ 231 (239)
||||+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|+ +|+++ ..|++++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~ 240 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQ 240 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHH
Confidence 99999999999999999999999999988888654 4699999999999999999999997 59997 6788887
Q ss_pred HH
Q 026376 232 YK 233 (239)
Q Consensus 232 ~~ 233 (239)
+.
T Consensus 241 ~~ 242 (259)
T PRK14260 241 IF 242 (259)
T ss_pred Hh
Confidence 64
No 239
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-45 Score=347.29 Aligned_cols=203 Identities=24% Similarity=0.418 Sum_probs=173.0
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..++++||+|+|+++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 469999999999653 46899999999999999999999999999999999999999999998874 259
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc---------CCCCCCChHHHHHHHHHHHhccC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL---------QPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgGqkqrv~laral~~~ 165 (239)
+|++|++.. +..+..+++....+..+++++.++++.+++.+.... .....||||||||++||||++++
T Consensus 417 ~~v~Q~~~l---f~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 417 SVVSQRVHL---FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred eEEcccchh---hcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999742 334666666443344567889999999998754322 13567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++|||||||++||+++.+.+.+.+.+. ++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 562 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QFDRICVMDNGQII-EQGTHQELLA 562 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hCCEEEEEeCCeEE-EeCCHHHHHh
Confidence 9999999999999999999999988765 569999999999987 49999999999997 5799887653
No 240
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.6e-45 Score=288.42 Aligned_cols=144 Identities=44% Similarity=0.768 Sum_probs=136.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 108 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 108 (239)
++++|++++|++ ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|++++...++|++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------
Confidence 468999999954 4699999999999999999999999999999999999999999999988778888887
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376 109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188 (239)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 188 (239)
||+||+||++|||||+.+|+++||||||++||+.++..+.+
T Consensus 71 ---------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~ 111 (144)
T cd03221 71 ---------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE 111 (144)
T ss_pred ---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 189 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 189 ~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
.+++.+.|||++||+.+++..+||++++|++|+
T Consensus 112 ~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 112 ALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 998888899999999999999999999999985
No 241
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-45 Score=311.91 Aligned_cols=204 Identities=22% Similarity=0.274 Sum_probs=164.2
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc--------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-------- 91 (239)
...+|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+++.
T Consensus 13 ~~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 13 TQQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CCceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 356799999999995 45799999999999999999999999999999999999875 7999987541
Q ss_pred -------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHH
Q 026376 92 -------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKS 154 (239)
Q Consensus 92 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 154 (239)
..++|++|++... . .+..+++... ... ...+++.++++.+++.. ...++++.+|||||+|
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 168 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQ 168 (265)
T ss_pred cCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHH
Confidence 2489999986322 1 2343333211 111 11345667788777632 2346778999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|++|||||+.+|++|||||||++||+.++..+.+.+.+. +.|||+|||+++++..+||++++|++|++. ..|+.+++
T Consensus 169 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 247 (265)
T PRK14252 169 RLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELI-EFGATDTI 247 (265)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999999999999888877654 469999999999999999999999999997 56777665
Q ss_pred H
Q 026376 233 K 233 (239)
Q Consensus 233 ~ 233 (239)
.
T Consensus 248 ~ 248 (265)
T PRK14252 248 F 248 (265)
T ss_pred H
Confidence 4
No 242
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-46 Score=344.50 Aligned_cols=197 Identities=17% Similarity=0.233 Sum_probs=161.1
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 92 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 92 (239)
++++|+++|+++.| + .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++. .
T Consensus 262 ~~~~l~~~~l~~~~-~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 262 HETVFEVRNVTSRD-R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred CCcEEEEeCccccC-C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 34589999999977 2 3799999999999999999999999999999999999999999998762 2
Q ss_pred EEEEEeeccC-CCCCCCCcHHHHHHHh-------C----C--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376 93 RIAVFSQHHV-DGLDLSSNPLLYMMRC-------F----P--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 93 ~~~~~~q~~~-~~~~~~~~~~~~~~~~-------~----~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 156 (239)
.++|++|++. ..+....+...++... . . . ....++.++++.+++.....++++.+|||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 4899999741 1222223444433211 0 0 0 11234678999999963356789999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATP 224 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~ 224 (239)
+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||++++..+||++++|++|++..
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999988887754 36799999999999999999999999999863
No 243
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.5e-45 Score=353.50 Aligned_cols=205 Identities=27% Similarity=0.415 Sum_probs=174.4
Q ss_pred eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
.++++||+|+|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 5999999999964 356999999999999999999999999999999999999999999999873 3699
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++.. +..+..+++....+..+.+++.++++.+++.+.... .....||||||||++|||||+++
T Consensus 543 ~v~Q~~~l---f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 543 YVPQDPRL---FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred EECCChhh---hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999742 345666666543334567888888888877543221 23467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 237 (239)
|++||||||||+||+++...+.+.+.+. +.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.++..
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~-e~G~~~eLl~~~~ 691 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIV-ADGPKDQVLEALR 691 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEE-eeCCHHHHHHHhh
Confidence 9999999999999999999999988765 579999999999885 69999999999997 6899999877654
No 244
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=318.61 Aligned_cols=204 Identities=20% Similarity=0.233 Sum_probs=165.4
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc--------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------- 91 (239)
.+++|.++|++++|+ +..+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 42 ~~~~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 42 GDAKLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCceEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 456899999999995 4579999999999999999999999999999999999986 68999987652
Q ss_pred -----eEEEEEeeccCCCCCCCCcHHHHHHHh--C--------------C---CCcHHHHHHHHHhcCCCc---ccccCC
Q 026376 92 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--F--------------P---GVPEQKLRAHLGSFGVTG---NLALQP 144 (239)
Q Consensus 92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~--------------~---~~~~~~~~~~l~~~~l~~---~~~~~~ 144 (239)
..++|++|++.. +. .+...++... . . ....+.+.++++.+++.. ...+++
T Consensus 121 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 197 (305)
T PRK14264 121 LVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN 197 (305)
T ss_pred HHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence 258999998632 11 2444333211 0 0 001345677888888742 234677
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeE-EEEeCCe
Q 026376 145 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEEL-WVVSEGK 221 (239)
Q Consensus 145 ~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i-~~l~~G~ 221 (239)
+.+||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||++|||++++..+||++ ++|++|+
T Consensus 198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~ 277 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGE 277 (305)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCE
Confidence 8999999999999999999999999999999999999999998888765 469999999999999999996 5789999
Q ss_pred EEeeCCChhHHH
Q 026376 222 ATPFHGTFHDYK 233 (239)
Q Consensus 222 i~~~~g~~~~~~ 233 (239)
++ ..|+++++.
T Consensus 278 i~-~~g~~~~~~ 288 (305)
T PRK14264 278 LV-EYDDTDKIF 288 (305)
T ss_pred EE-EeCCHHHHH
Confidence 97 578887764
No 245
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.9e-45 Score=353.33 Aligned_cols=204 Identities=26% Similarity=0.424 Sum_probs=170.2
Q ss_pred CeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 27 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
..++++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 35999999999975 246999999999999999999999999999999999999999999999874 36
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhc
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~ 163 (239)
++|++|++.. +..+..+++....+..+++++.++++..++.+... .....+||||||||++||||++
T Consensus 557 i~~v~Q~~~l---F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 557 VALVGQEPVL---FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred ceEEecCccc---cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 9999999752 34566666653333456778888888887753221 1234579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
++|+|||||||||+||.++...+.+.....++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+.
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~iv-e~Gt~~eL~~~ 703 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVV-EMGTHKQLMED 703 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEE-EeeCHHHHHhC
Confidence 999999999999999999988888733334679999999999886 59999999999997 68999988653
No 246
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.6e-46 Score=344.47 Aligned_cols=206 Identities=19% Similarity=0.263 Sum_probs=163.9
Q ss_pred CCeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCc-----------
Q 026376 26 PPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK----------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~----------- 91 (239)
+++|+++|+++.|++ +..+|+|+||+|.+||+++|+||||||||||+|+|+|+++| ++|+|.+++.
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 458999999999942 34689999999999999999999999999999999999995 8999998652
Q ss_pred -eEEEEEeeccC-CCCCCCCcHHHHHHH----hCC---CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376 92 -VRIAVFSQHHV-DGLDLSSNPLLYMMR----CFP---GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 -~~~~~~~q~~~-~~~~~~~~~~~~~~~----~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 158 (239)
..++|++|++. ..+....+...++.. ... .. ...++.++++.+++.....++++.+|||||||||+|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 24899999852 112222233332211 010 11 134578899999996434678999999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||||+.+|++|||||||+|||+.++..+.+.+. +.+.|||+||||++++.++||++++|++|+++ ...+.+++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 490 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK-GDFVNHAL 490 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccC
Confidence 999999999999999999999999988776554 34679999999999999999999999999986 44544443
No 247
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.1e-45 Score=300.49 Aligned_cols=188 Identities=20% Similarity=0.319 Sum_probs=154.4
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..++++|++++|++. ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 469999999999642 46899999999999999999999999999999999999999999998763 359
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
+|++|++.. + ..+...++.. .......++.++++ .++++.+|||||+||++|||||+.+|+++|||||
T Consensus 85 ~~v~q~~~~-~--~~tv~~~l~~-~~~~~~~~~~~~l~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 152 (207)
T cd03369 85 TIIPQDPTL-F--SGTIRSNLDP-FDEYSDEEIYGALR--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152 (207)
T ss_pred EEEecCCcc-c--CccHHHHhcc-cCCCCHHHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 999998632 1 2344444422 11223334444444 2457899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376 175 SNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 228 (239)
|++||+.++..+.+.|++. +.|+|++||+.+++.. ||++++|++|++. ..|+
T Consensus 153 ~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~-~~g~ 206 (207)
T cd03369 153 TASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVK-EYDH 206 (207)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEE-ecCC
Confidence 9999999999998888764 5699999999999976 9999999999986 4454
No 248
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-46 Score=334.80 Aligned_cols=202 Identities=27% Similarity=0.416 Sum_probs=173.4
Q ss_pred eEEEEeeEEEcCCCC-ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~-~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
.++++||+|+|++.+ ++|+|+||++++||.++|+|++|||||||+.+|+|.++|++|+|..++. ..++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 799999999998754 6999999999999999999999999999999999999999999998773 2477
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~~ 165 (239)
+++|.... +..+...++....++.+.+++.++++.+|+++...+. -...||||||||++|||+|+++
T Consensus 416 vl~Qr~hl---F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 416 VLTQRVHL---FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhccchHH---HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 78887532 2345556665555667788999999999997544333 2467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
.+++||||||.|||+.+..++++.+.+. ++|+|+|||++..++ .||+|++|++|+++ .+|+++++..
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkii-e~G~~~~Ll~ 561 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKII-EEGTHAELLA 561 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeee-ecCCHHhhhc
Confidence 9999999999999999999999988653 679999999999998 59999999999997 6899988754
No 249
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.7e-45 Score=307.14 Aligned_cols=192 Identities=24% Similarity=0.452 Sum_probs=155.3
Q ss_pred CCeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------e
Q 026376 26 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V 92 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~ 92 (239)
.++++++|++++|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4589999999999642 36899999999999999999999999999999999999999999998763 2
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcH---------HHHHHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE---------QKLRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
.++|++|++.. + ..+...++......... ..+.++++.+ |+.. ..++++.+|||||||||+||||
T Consensus 89 ~i~~~~q~~~l-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 89 KVSLVGQEPVL-F--ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT-EVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hEEEEecccHH-H--hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCCHHHHHHHHHHHH
Confidence 58999998632 1 12444443211111111 1134567777 6754 3567789999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
|+.+|++|||||||++||+.++..+.+.+++. +.|||++|||++++. .||++++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 99999999999999999999999998888754 459999999999996 4999999999874
No 250
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=347.02 Aligned_cols=202 Identities=24% Similarity=0.355 Sum_probs=169.7
Q ss_pred eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
.++++||+|+|+++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 59999999999753 56999999999999999999999999999999999999999999998874 3589
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~ 164 (239)
|++|++.. +..+..+++....+ ..+.++++++++.+++.+... .....+||||||||++|||||++
T Consensus 421 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVHL---FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCcee---ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 99999742 33556666643222 246778888888887653221 12235699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|++|||||||++||+++...+.+.+.+. ++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~-e~g~~~~l~~ 567 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIV-ERGTHAELLA 567 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999988765 579999999998876 59999999999997 6799888754
No 251
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-45 Score=298.53 Aligned_cols=165 Identities=21% Similarity=0.384 Sum_probs=138.2
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 93 (239)
+++|+++|++++| +|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 3479999999998 799999999999999999999999999999999999999999988762 24
Q ss_pred EEEEeeccC-CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 94 IAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 94 ~~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
++|++|++. ..+....+..+++.... .||||||||++|||||+.+|++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~---------------------------~LS~G~~qrl~la~al~~~p~llllD 129 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS---------------------------LLSGGNQQKVVLARWLARDPRVLILD 129 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh---------------------------hcCHHHHHHHHHHHHHccCCCEEEEC
Confidence 888888742 11222223333221100 09999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 173 EPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
|||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|++
T Consensus 130 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 130 EPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999988877654 56999999999999999999999999974
No 252
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.4e-45 Score=314.13 Aligned_cols=198 Identities=21% Similarity=0.288 Sum_probs=165.5
Q ss_pred EEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 29 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
|+++|++++|++ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++++. ..++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 789999999953 3568999999999999999999999999999999999998 7899998873 25899
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCC-----------CChHHHHHHHHHHHhccC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----------LSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqrv~laral~~~ 165 (239)
++|++... ..+...++.. +.....+++.++++.+++.+. .++.+.. ||||||||++|||||+.+
T Consensus 82 v~q~~~lf---~~tv~~nl~~-~~~~~~~~~~~~l~~~gL~~~-~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 82 IPQKVFIF---SGTFRKNLDP-YGKWSDEEIWKVAEEVGLKSV-IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred ECCCcccc---hhhHHHHhhh-ccCCCHHHHHHHHHHcCCHHH-HHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99987421 2345555422 122345678889999999643 4555555 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|+||||||||++||+.+...+.+.+.+. +.|||+|||+++++.. ||+|++|++|+++ +.|+++++..
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 225 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLLN 225 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHhh
Confidence 9999999999999999999988888753 5699999999999875 9999999999997 5788887654
No 253
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.5e-45 Score=354.23 Aligned_cols=202 Identities=23% Similarity=0.387 Sum_probs=171.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.++++||+|+|++++.+|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 5999999999975567999999999999999999999999999999999999999999999874 36999
Q ss_pred EeeccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~ 165 (239)
++|++.. +..+..+++... .+..+.+++.++++..++.+... ......||||||||++|||||+++
T Consensus 553 v~Q~~~l---f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 553 LPQEPYI---FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred EecCcee---hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 9999752 345666666533 23456778888888877743221 223467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF-QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~-~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++|||||||++||.++.+.+.+.+.+. +.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~-~~G~~~~L~~ 697 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKII-EQGSHDELLD 697 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999888765 579999999999885 69999999999997 6899988754
No 254
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.9e-45 Score=306.15 Aligned_cols=190 Identities=26% Similarity=0.342 Sum_probs=152.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 108 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 108 (239)
+.+++++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++... .+..+.. .+...
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~-~~~~~~~--~~~~~ 98 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS-SLLGLGG--GFNPE 98 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc-hhhcccc--cCCCC
Confidence 78899999995 56799999999999999999999999999999999999999999999887531 1111111 11122
Q ss_pred CcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376 109 SNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182 (239)
Q Consensus 109 ~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~ 182 (239)
.+..+++.. ...... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 233333321 111111 235677888899964 5678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 183 VEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 183 ~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
+..+.+.+.+. +.|||++|||.+++..+||++++|++|+++
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 98888877643 569999999999999999999999999986
No 255
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=319.16 Aligned_cols=205 Identities=20% Similarity=0.266 Sum_probs=166.2
Q ss_pred CCCeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376 25 GPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------- 91 (239)
...+|+++|++++|.+ ...+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3458999999999953 3469999999999999999999999999999999999986 57999987543
Q ss_pred ------eEEEEEeeccCCCCCCCCcHHHHHH--HhCCCCc-H----HHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 026376 92 ------VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPGVP-E----QKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR 155 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~-~----~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 155 (239)
..++|++|++... ..+...++. ....... . +.+.++++.+++.. ...++++.+||||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~---~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPF---EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred chHhhhccEEEEecCCccC---CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 2599999987532 234444443 1111111 1 22566788887632 23467889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++|||||+.+|+||||||||++||+.+...+.+.+.+. +.|||+|||+++++.++||+|++|++|+++ ..|+++++.
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l~ 312 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIE-EAGETKTIF 312 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999999988887777654 469999999999999999999999999997 579888864
No 256
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-46 Score=342.55 Aligned_cols=197 Identities=25% Similarity=0.285 Sum_probs=162.7
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEEEe
Q 026376 31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAVFS 98 (239)
Q Consensus 31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~~~ 98 (239)
++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368999995 457999999999999999999999999999999999999999999998763 2489999
Q ss_pred eccCCCCCCCCcHHHHHHHh---CCC--Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 99 QHHVDGLDLSSNPLLYMMRC---FPG--VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~---~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|++.. ....+...++... ... .. .+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|
T Consensus 80 q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 80 QELNL--VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-DPRAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred ccccc--ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 98632 2223444443211 001 11 235778899999974 467889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||||||++||+.++.++.+.+++ .+.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 221 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI-ATQPLAGL 221 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-eecChhhC
Confidence 99999999999999998777755 3679999999999999999999999999997 56776554
No 257
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.3e-45 Score=292.37 Aligned_cols=158 Identities=22% Similarity=0.399 Sum_probs=130.6
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 108 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 108 (239)
|+++|++++|++ ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|.+++.. ....
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~---------~~~~--- 67 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE---------VSFA--- 67 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE---------CCcC---
Confidence 478999999954 579999999999999999999999999999999999999999999876531 0000
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376 109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188 (239)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 188 (239)
..... .-..++. +.+||||||||++|||||+.+|++|||||||++||+.++..+.+
T Consensus 68 -~~~~~---------------~~~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~ 123 (163)
T cd03216 68 -SPRDA---------------RRAGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123 (163)
T ss_pred -CHHHH---------------HhcCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 00000 0001111 11299999999999999999999999999999999999999888
Q ss_pred HHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 189 GLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 189 ~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
.++++ +.|||++|||++++..+||++++|++|+++
T Consensus 124 ~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 87654 569999999999999999999999999985
No 258
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.8e-45 Score=300.71 Aligned_cols=186 Identities=26% Similarity=0.395 Sum_probs=148.8
Q ss_pred EEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 29 ISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 29 l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
++++||+++|++. ..+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .++|++|++..
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~l- 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPWI- 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCchh-
Confidence 4789999999653 3699999999999999999999999999999999999999999999988 79999999742
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
+ ..+..+++.... ....++..++++.+++.. ...++++.+||+|||||++|||||+.+|+++|||||
T Consensus 78 ~--~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 78 Q--NGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred c--cCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1 235555543211 122333444444444321 123456789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-Hhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 175 SNHLDLDAVEALIQG-LVL---FQGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 175 t~~LD~~~~~~l~~~-l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
|++||+.+...+.+. +.+ .+.|||++||+++.+.. ||++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999998888763 432 24699999999999987 99999999885
No 259
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-46 Score=313.57 Aligned_cols=202 Identities=21% Similarity=0.293 Sum_probs=166.8
Q ss_pred eEEEEeeEEEcCCC-----------------------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 28 IISFSDASFGYPGG-----------------------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 28 ~l~~~~l~~~y~~~-----------------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
.++++|+++-|+.+ ..-++|+||+|+.||+++|.|-||||||||+|+|+++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 47888888888421 1237899999999999999999999999999999999999999
Q ss_pred eEEecCc---------------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccC
Q 026376 85 TVFRSAK---------------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQ 143 (239)
Q Consensus 85 ~i~~~~~---------------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~ 143 (239)
+|.+++. .+++++||++. +.+..+++++.... ..+ ..++++.++|+.+|+.+ +.++
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~-~~~~ 160 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEG-YADK 160 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-hhhc
Confidence 9998874 36999999864 33445555554321 112 23467889999999985 5788
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 144 ~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l----~~~~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
++.+|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.| ++.++||||||||++++.++.|||.+|++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence 99999999999999999999999999999999999997666655544 45678999999999999999999999999
Q ss_pred CeEEeeCCChhHHH
Q 026376 220 GKATPFHGTFHDYK 233 (239)
Q Consensus 220 G~i~~~~g~~~~~~ 233 (239)
|+++. .|+++|+.
T Consensus 241 G~ivQ-~Gtp~eIl 253 (386)
T COG4175 241 GEIVQ-VGTPEEIL 253 (386)
T ss_pred CeEEE-eCCHHHHH
Confidence 99984 68887753
No 260
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.9e-45 Score=306.29 Aligned_cols=193 Identities=18% Similarity=0.327 Sum_probs=157.3
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC---CCceeEEecCc--------eE
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK--------VR 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~--------~~ 93 (239)
.+.++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 46789999999764 579999999999999999999999999999999999999 99999998763 35
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHH----hCCC-Cc----HHHHHH-HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMR----CFPG-VP----EQKLRA-HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~----~~~~-~~----~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
++|++|++... ...+..+++.. .... .. ...+.+ .++.+++.. ..++.+.+|||||+||++|||||+
T Consensus 83 i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAYVRQDDILL--PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-IGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEEeCCCCccC--cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-hhcccccCcCHHHHHHHHHHHHHH
Confidence 89999986322 22233333321 1111 11 123444 788888864 456788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCH-HHHhhhcCeEEEEeCCeEE
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDE-HLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~-~~~~~~~d~i~~l~~G~i~ 223 (239)
.+|++|||||||++||+.++..+.+.+.+. +.|||++||+. +.+..+||++++|++|+++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999888877643 56999999998 5888899999999999986
No 261
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-45 Score=293.70 Aligned_cols=160 Identities=26% Similarity=0.398 Sum_probs=137.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 98 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~ 98 (239)
++++|++++|++ ..+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 468999999954 46999999999999999999999999999999999999999999988763 2478888
Q ss_pred eccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376 99 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L 178 (239)
|++.. ....+..+++. |||||+||++|||||+.+|++|||||||++|
T Consensus 80 q~~~~--~~~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 80 EEPSL--YENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred cCCcc--ccCCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 87531 11122222210 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 179 DLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 179 D~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
|+.++..+.+.+.+. +.|+|++|||.+++..+||++++|++|++
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999988877654 46999999999999999999999999874
No 262
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.6e-45 Score=309.61 Aligned_cols=181 Identities=30% Similarity=0.361 Sum_probs=148.6
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEeeccCCCCCCCCcHHHHHHHh
Q 026376 45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRC 118 (239)
Q Consensus 45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q~~~~~~~~~~~~~~~~~~~ 118 (239)
|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.. ..+|++|++... ...+..+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~--~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLL--PWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccC--CCCCHHHHHHHH
Confidence 579999999999999999999999999999999999999999987642 258999986422 223444433211
Q ss_pred ----CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376 119 ----FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190 (239)
Q Consensus 119 ----~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 190 (239)
..... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTE-AADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHH-HHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 11111 234678899999974 567889999999999999999999999999999999999999999988877
Q ss_pred hhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376 191 VLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 229 (239)
Q Consensus 191 ~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 229 (239)
.+. +.|||++|||++++..+||++++|++|+++ ..|+.
T Consensus 158 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~ 199 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA-NIGQI 199 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe-cccCc
Confidence 642 569999999999999999999999999986 44554
No 263
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=309.26 Aligned_cols=204 Identities=20% Similarity=0.214 Sum_probs=166.9
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc---------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------- 91 (239)
++.+.++++++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 45789999999994 56799999999999999999999999999999999999986 7999988753
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHHh--C---CCCcHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--F---PGVPEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++... ..+..+++... . .....+++.++++.+++... ..++++.+|||||+||++||
T Consensus 85 ~~~~~~i~~v~q~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPF---SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred HhhhhceEEEecCCccc---cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 2489999986421 23444444211 1 11123467888999988532 23467889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe--------CCeEEeeCCCh
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS--------EGKATPFHGTF 229 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~--------~G~i~~~~g~~ 229 (239)
|||+.+|++|||||||+|||+.++..+.+.+++. +.|||++||+++++..+||++++|+ +|+++ ..|+.
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~ 240 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPT 240 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE-EeCCH
Confidence 9999999999999999999999999998888764 4599999999999999999999996 89997 57888
Q ss_pred hHHHH
Q 026376 230 HDYKK 234 (239)
Q Consensus 230 ~~~~~ 234 (239)
+++.+
T Consensus 241 ~~~~~ 245 (261)
T PRK14263 241 AQIFQ 245 (261)
T ss_pred HHHHh
Confidence 77643
No 264
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.6e-45 Score=343.95 Aligned_cols=200 Identities=24% Similarity=0.370 Sum_probs=170.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.++++|++|+|+++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 5999999999975556999999999999999999999999999999999999999999998873 35999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p 166 (239)
++|++.. +..+..+++.... ..+++++.++++.+|+.+... ......||||||||++|||||+.+|
T Consensus 420 v~Q~~~l---F~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 420 VQQDPVV---LADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred EccCCcc---ccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999752 3345666664432 456778888988888753221 1234679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++|||||||++||+++.+.+.+.+.+. ++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~-~~G~~~~L~ 562 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAV-EQGTHQQLL 562 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999999999888765 579999999998887 59999999999997 679988765
No 265
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-45 Score=308.40 Aligned_cols=201 Identities=19% Similarity=0.242 Sum_probs=164.1
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-----------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK----------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~----------- 91 (239)
+++++||++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+.. |++|+|.+++.
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 589999999995 4569999999999999999999999999999999999864 48999987662
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la 159 (239)
..++|++|++... . .+..+++... .... ..+++.++++.+++.. ...++++.+||||||||++||
T Consensus 82 ~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 82 LRKKVGMVFQKPNPF-P--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecCCccC-c--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 2489999986422 1 2444443211 1111 1245667888888742 234678899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||+.+|++|||||||++||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|++. +.|+++++.
T Consensus 159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14266 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII-ESGLTDQIF 233 (250)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEE-EeCCHHHHH
Confidence 9999999999999999999999999988877654 469999999999999999999999999997 678888764
No 266
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-47 Score=302.46 Aligned_cols=202 Identities=23% Similarity=0.384 Sum_probs=167.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~ 96 (239)
|++++||+++| +.+.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|++++.. .++.
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 58999999999 56789999999999999999999999999999999999999999999988753 3455
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCC-------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFP-------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
+.|+......++...+..+. .++ ..+...+.++++.+++. ++.++...+||||||||+.||..++++.+.+
T Consensus 80 LkQ~N~i~~rlTV~dLv~FG-RfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFG-RFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred HHhhchhhheeEHHHHhhcC-CCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence 55554322222222222221 111 23456788999999997 4788999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+||||.|+||......+++.|+ +.++||++|-||.+|+..++|+|+.|++|+++ ..|+++++.
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii 224 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEII 224 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhc
Confidence 9999999999998877777665 45889999999999999999999999999997 789999875
No 267
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.9e-45 Score=286.11 Aligned_cols=192 Identities=24% Similarity=0.312 Sum_probs=159.6
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 91 (239)
+|+++++++..+.+ ..+|++|+|.|++||.++|+||+||||||||-+++|+..|++|+|...+.
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 78999999988543 36999999999999999999999999999999999999999999987653
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH----hC--CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR----CF--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
.++|++||.+.. ..+.+.+++... .. .......+.++|+.+|+.+. ...++.+|||||+|||+|||||+
T Consensus 86 R~~~vGfVFQSF~L--ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~R-l~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 86 RARHVGFVFQSFHL--IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKR-LTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred hccceeEEEEeeec--cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccc-cccCccccCchHHHHHHHHHHhc
Confidence 369999998642 233344444321 11 12334568899999999864 46778999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
..|+||+.||||-+||..+-..+.+.+- +.+.|.|+||||+..+.+ |+|.+.|.+|+++
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence 9999999999999999998887777653 346699999999999886 9999999999986
No 268
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.1e-44 Score=293.26 Aligned_cols=162 Identities=28% Similarity=0.488 Sum_probs=139.0
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376 29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 97 (239)
Q Consensus 29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~ 97 (239)
|+++|++++|++. ..+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999643 36899999999999999999999999999999999999999999998764 247888
Q ss_pred eeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376 98 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~ 177 (239)
+|++.. + ..+..+++ +.+||||||||++||||++.+|++|||||||++
T Consensus 81 ~q~~~~-~--~~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~ 128 (178)
T cd03247 81 NQRPYL-F--DTTLRNNL-----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG 128 (178)
T ss_pred ccCCee-e--cccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 886521 1 11221111 679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 178 LDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 178 LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
||+.++..+.+.+.+. +.|||++|||.+++. .||++++|++|+++
T Consensus 129 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~ 175 (178)
T cd03247 129 LDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKII 175 (178)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 9999999988888654 569999999999996 69999999999986
No 269
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=328.74 Aligned_cols=203 Identities=22% Similarity=0.292 Sum_probs=162.2
Q ss_pred CCeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCC
Q 026376 26 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 103 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~ 103 (239)
.++++++|+++.|+++ +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++... ++.+...
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--~i~~~~~- 95 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--LIAISSG- 95 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--eEEeccc-
Confidence 4589999999999653 3589999999999999999999999999999999999999999999887542 2222211
Q ss_pred CCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376 104 GLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177 (239)
Q Consensus 104 ~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~ 177 (239)
+....+...++.. ...... .+.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 96 -l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~-~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 96 -LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGK-FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred -cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChh-HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 1111233333321 111121 234567889999964 45788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 178 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 178 LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|++. ..|+++++..
T Consensus 174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv-~~G~~~el~~ 232 (549)
T PRK13545 174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK-EYGDIKEVVD 232 (549)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999998888877543 679999999999999999999999999997 5687766543
No 270
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=6.3e-45 Score=299.25 Aligned_cols=182 Identities=26% Similarity=0.404 Sum_probs=148.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 98 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~ 98 (239)
|+++|+++.|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 47899999995 457999999999999999999999999999999999999999999988764 2588999
Q ss_pred eccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376 99 QHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~ 176 (239)
|+... ....+...++.. ........++.++++.+++.+ ..++++.+||||||||++||||++.+|+++||||||+
T Consensus 80 q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 80 HLPGL--KPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cCccc--ccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH-HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 87532 222344443321 111222446788999999974 4578899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEE
Q 026376 177 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWV 216 (239)
Q Consensus 177 ~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~ 216 (239)
+||+.++..+.+.+.++ +.|||++||+...+ .|++++.
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 99999999988887654 57999999998655 3677654
No 271
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.5e-45 Score=292.31 Aligned_cols=158 Identities=32% Similarity=0.623 Sum_probs=134.2
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
++++|++++|++. ..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999642 45899999999999999999999999999999999999999999998763 24778
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~ 176 (239)
++|++.. + ..+..+++ ||||||||++|||||+.+|++|||||||+
T Consensus 81 ~~q~~~~-~--~~tv~~~l--------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~ 125 (173)
T cd03246 81 LPQDDEL-F--SGSIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS 125 (173)
T ss_pred ECCCCcc-c--cCcHHHHC--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 8876521 1 11222111 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 177 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 177 ~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
+||+.++..+.+.+.+. +.|||++|||.+++. +||++++|++|++
T Consensus 126 ~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 126 HLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 99999999888877653 569999999999985 7999999999874
No 272
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-44 Score=306.73 Aligned_cols=193 Identities=22% Similarity=0.277 Sum_probs=150.6
Q ss_pred EEcCCCCceeeeeeEEEe-----CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCc
Q 026376 36 FGYPGGPILFKNLNFGID-----LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN 110 (239)
Q Consensus 36 ~~y~~~~~~l~~isl~i~-----~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~ 110 (239)
|+|++....+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.+++. .++|++|++.... ..+
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~~~~--~~t 77 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKADY--EGT 77 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEecccccCCC--CCC
Confidence 346544446677777776 79999999999999999999999999999999998875 7999999864322 234
Q ss_pred HHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376 111 PLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188 (239)
Q Consensus 111 ~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 188 (239)
..+++..... ........++++.+++.. ..++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+
T Consensus 78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 78 VRDLLSSITKDFYTHPYFKTEIAKPLQIEQ-ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 4443321111 112334677899999964 5678899999999999999999999999999999999999999998887
Q ss_pred HHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE-eeCCChhHH
Q 026376 189 GLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT-PFHGTFHDY 232 (239)
Q Consensus 189 ~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~ 232 (239)
.+++. +.|||+||||++++..+||++++|+++... ...+++.+.
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 77653 579999999999999999999999765432 123455443
No 273
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-45 Score=339.05 Aligned_cols=202 Identities=18% Similarity=0.253 Sum_probs=163.4
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 93 (239)
++.++++|+++. .+++|+||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++++ ..
T Consensus 255 ~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 457899999832 3899999999999999999999999999999999999999999998753 24
Q ss_pred EEEEeeccC-CCCCCCCcHHHHHHHh---C--------CC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 94 IAVFSQHHV-DGLDLSSNPLLYMMRC---F--------PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 94 ~~~~~q~~~-~~~~~~~~~~~~~~~~---~--------~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
++|++|++. ..+....+...++... . .. ...+.+.++++.+++.....++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 899999852 1122223444433210 0 00 112457789999999534568899999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||+.+|++|||||||+|||+.++..+++.+. +.+.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 484 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA-GELAREQAT 484 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence 9999999999999999999999998877764 44679999999999999999999999999987 567766654
No 274
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-44 Score=306.08 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=151.1
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHH--hCC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR--CFP 120 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~ 120 (239)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. +++++|.... ....+...++.. ...
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~~~--~~~~tv~enl~~~~~~~ 113 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISAGL--SGQLTGIENIEFKMLCM 113 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEecccCC--CCCCcHHHHHHHHHHHc
Confidence 5899999999999999999999999999999999999999999998875 4566665421 112233333321 111
Q ss_pred CCcH----HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---c
Q 026376 121 GVPE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---F 193 (239)
Q Consensus 121 ~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~ 193 (239)
.... ..+..+++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.+.+ .
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~ 192 (264)
T PRK13546 114 GFKRKEIKAMTPKIIEFSELGE-FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192 (264)
T ss_pred CCCHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence 1222 23456778888864 56788999999999999999999999999999999999999998888877754 3
Q ss_pred CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 194 QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 194 ~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
+.|||++||+++++..+||++++|++|++. ..|+++++...
T Consensus 193 g~tiIiisH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 233 (264)
T PRK13546 193 NKTIFFVSHNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLPK 233 (264)
T ss_pred CCEEEEEcCCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHHH
Confidence 679999999999999999999999999997 57888876554
No 275
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.2e-44 Score=341.49 Aligned_cols=201 Identities=23% Similarity=0.393 Sum_probs=168.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.++++|++|+|+++..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5999999999975456899999999999999999999999999999999999999999998873 36999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p 166 (239)
++|++.. +..+..+++....+..+++++.++++.+++.+... ......||||||||++|||||+++|
T Consensus 414 v~Q~~~l---f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 414 VFQDAGL---FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred EecCccc---ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999742 34566666643333455777888888777643211 1224579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++|||||||++||+.+...+.+.+.+. ++|+|+|||+.+.+. .||++++|++|++. ..|+++++.
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~-~~g~~~~l~ 557 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVV-ESGSFDELV 557 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999888764 579999999999876 69999999999997 578877764
No 276
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-45 Score=293.73 Aligned_cols=161 Identities=29% Similarity=0.434 Sum_probs=134.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIA 95 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~~ 95 (239)
++++|++++|+ ++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 46899999995 457999999999999999999999999999999999999999999987652 2367
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt 175 (239)
|++|++.. ....+..+++. + .||||||||++|||||+.+|+++||||||
T Consensus 80 ~~~q~~~~--~~~~t~~~~l~-------------------~----------~lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 80 MVFQDFAL--FPHLTVLENIA-------------------L----------GLSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred EEecCCcc--CCCCCHHHhee-------------------e----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 77776421 11112211110 0 09999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 176 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 176 ~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
++||+.++..+.+.+.+. +.|+|++|||++++..+||++++|++|+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999888877543 5699999999999999999999999884
No 277
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.8e-45 Score=337.42 Aligned_cols=200 Identities=23% Similarity=0.338 Sum_probs=160.3
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCc------------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK------------ 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~------------ 91 (239)
..++|+++|+++.|+ +..+|+|+||+|.+||+++|+||||||||||+|+|+|+.+| ++|+|++++.
T Consensus 257 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CCceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 356899999999995 45689999999999999999999999999999999998876 6999988652
Q ss_pred eEEEEEeeccCCCCCCCCcHHHHHHH-h------CCCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 92 VRIAVFSQHHVDGLDLSSNPLLYMMR-C------FPGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 92 ~~~~~~~q~~~~~~~~~~~~~~~~~~-~------~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
..++|++|++........+....+.. . .... ..+++.++++.+++.+...++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 24899999753222111122222111 0 0011 134678899999997435678899999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CC-EEEEEecCHHHHhh-hcCeEEEEeCCeEEee
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QG-GILMVSHDEHLISG-SVEELWVVSEGKATPF 225 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~-tii~vsHd~~~~~~-~~d~i~~l~~G~i~~~ 225 (239)
|+.+|++|||||||+|||+.++..+.+.|.+. +. |||+||||++++.. +||++++|++|+++.+
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999988877654 33 69999999999987 5999999999998643
No 278
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.7e-45 Score=338.94 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=162.1
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 92 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 92 (239)
++++|+++|+++ .+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .
T Consensus 265 ~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 265 GAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred CCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 456899999983 1589999999999999999999999999999999999999999988763 2
Q ss_pred EEEEEeeccC-CCCCCCCcHHHHHHH------hC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376 93 RIAVFSQHHV-DGLDLSSNPLLYMMR------CF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 93 ~~~~~~q~~~-~~~~~~~~~~~~~~~------~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral 162 (239)
.++|++|++. ..+....+...++.. .. . ....+.+.++++.+++.....++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 4899999742 112222233333211 01 0 112235778999999962346788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
+.+|++|||||||+|||+.++..+.+.+++ .+.|||+||||++++.++||++++|++|+++ ..|+.+++
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~-~~~~~~~~ 490 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS-GALTGAAI 490 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccC
Confidence 999999999999999999999988887765 4679999999999999999999999999997 45666554
No 279
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-44 Score=324.72 Aligned_cols=201 Identities=26% Similarity=0.414 Sum_probs=175.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.|+++||++.|+.++++|+++||+|++||.+||+|+|||||||++|+|.++.. ++|+|.++|. ..|||
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 49999999999766679999999999999999999999999999999999999 9999999884 35999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~~p 166 (239)
+||+... +..+.+.++....+....+++.++.+++++++...+. +...|||||||||+||||++.+|
T Consensus 430 VPQd~~L---FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 430 VPQDSVL---FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eCCcccc---cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 9998642 4456777775545567788999999999997543322 34579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|+++|||||+||.++..++++.+.+. ++|+|+|-|+++.+.. ||+|+++++|++. ..|+.+++..
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~-e~gth~ell~ 574 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVK-EYGTHSELLA 574 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeE-EeccHHHHhh
Confidence 999999999999999999999988763 5799999999999985 9999999999997 5699988766
No 280
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.2e-45 Score=336.38 Aligned_cols=200 Identities=23% Similarity=0.315 Sum_probs=161.8
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 93 (239)
+++++++|+++ .+|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.+++. ..
T Consensus 255 ~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 45899999984 2689999999999999999999999999999999999999999998762 24
Q ss_pred EEEEeeccC-CCCCCCCcHHHHHHH----hCC------C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 94 IAVFSQHHV-DGLDLSSNPLLYMMR----CFP------G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 94 ~~~~~q~~~-~~~~~~~~~~~~~~~----~~~------~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
++|++|++. ..+....+...++.. ... . ...+++.++++.+++.....++++.+|||||||||+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 899999852 112222333333321 000 0 113457889999999533568899999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||+.+|++|||||||+|||+.++..+.+.++++ +.|||++|||++++..+||++++|++|+++ ..++++++
T Consensus 409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 482 (501)
T PRK10762 409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS-GEFTREQA 482 (501)
T ss_pred HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE-EEeccccC
Confidence 999999999999999999999999888777653 569999999999999999999999999986 45655544
No 281
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.4e-44 Score=339.70 Aligned_cols=203 Identities=27% Similarity=0.457 Sum_probs=171.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.++++|++|+|++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+++. ..+++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 4999999999975567999999999999999999999999999999999999999999999763 46999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p 166 (239)
++|++.. +..+...++....+..+++++.++++..++.+... ......||||||||++||||++++|
T Consensus 408 V~Qd~~L---F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 408 VSQDPLL---FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred Eccccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 9999753 23566677654444456778888887776543222 1234579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
++|+||||||+||.++...+.+.+.+. ++|+|+|+|++..+.. ||+|++|++|+++ ..|+++++...
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~-e~G~h~eLl~~ 553 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIV-ERGTHEELLAK 553 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEE-EecCHHHHHHc
Confidence 999999999999999999998888643 4599999999999986 9999999999987 68999987553
No 282
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=334.05 Aligned_cols=205 Identities=18% Similarity=0.250 Sum_probs=161.9
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------ 92 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------ 92 (239)
.+++|+++|+++.| ..+|+++||+|.+||+++|+||||||||||+++|+|+.+|++|+|.+++..
T Consensus 247 ~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 247 GEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred CCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 34689999999975 258999999999999999999999999999999999999999999987631
Q ss_pred EEEEEeeccCC-CCCCCCcH-----HHHHHHh---CC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376 93 RIAVFSQHHVD-GLDLSSNP-----LLYMMRC---FP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 93 ~~~~~~q~~~~-~~~~~~~~-----~~~~~~~---~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 159 (239)
.++|++|++.. .+....+. ...+... .. . .....+.++++.+++.....++++.+|||||||||+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 28899997421 11111111 1111111 00 0 11345678899999853346889999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l---~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||++.+|+||||||||+|||+.++..+++.+ .+.+.|||++|||++++..+||++++|++|+++ ..++.++|.
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~ 479 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA-GIVDTKTTT 479 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence 9999999999999999999999999887766 445779999999999999999999999999997 344444443
No 283
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-45 Score=305.04 Aligned_cols=183 Identities=25% Similarity=0.378 Sum_probs=157.2
Q ss_pred CeEEEEeeEEEcCCC--------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEe
Q 026376 27 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS 98 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~ 98 (239)
++++++|+++.|+-+ ..+++||||+|++||+++|+|+||||||||-|+|+|+++|++|+|++++...
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i----- 77 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI----- 77 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch-----
Confidence 579999999999532 2689999999999999999999999999999999999999999999876520
Q ss_pred eccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376 99 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L 178 (239)
.. +. .....+++.++|+.+|+..+...+.+++|||||+||++|||||+.+|+++++|||+|+|
T Consensus 78 ----~~--~~-----------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 78 ----TK--LS-----------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred ----hh--cc-----------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhc
Confidence 00 00 12234678999999999888889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 179 DLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 179 D~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|...+.++++.+.+ .+.|.+++|||+..+..+|||+.+|..|++++ .|+.+++
T Consensus 141 DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE-~g~~~~~ 197 (268)
T COG4608 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE-IGPTEEV 197 (268)
T ss_pred chhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE-ecCHHHH
Confidence 99888877776654 36699999999999999999999999999984 5655543
No 284
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5e-44 Score=305.18 Aligned_cols=201 Identities=16% Similarity=0.219 Sum_probs=158.9
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..|+++|++++|++. ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 469999999999642 46899999999999999999999999999999999999999999998763 258
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc-----------CCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
+|++|++.. + ..+...++... .......+.++++.+ ++.. ..+.++.+||+||+||++|||||+
T Consensus 98 ~~v~q~~~l-~--~~tv~~nl~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 98 SIILQDPIL-F--SGSIRFNLDPE-CKCTDDRLWEALEIAQLKNMVKSLPGGLDA-VVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred EEECCCCcc-c--ccHHHHhcCcC-CCCCHHHHHHHHHHhCcHHHHhhcccccCc-EeccCCCcCCHHHHHHHHHHHHHh
Confidence 999998632 1 22333322111 111122333333333 3332 234567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
.+|++|||||||++||+.++..+.+.+.+. +.|||++||+++.+.. ||++++|++|+++ ..|+++++.+
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~-~~g~~~~~~~ 243 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILV-ECDTPENLLA 243 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999999999999888877653 5699999999999985 9999999999997 6788887754
No 285
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.9e-44 Score=295.93 Aligned_cols=172 Identities=24% Similarity=0.374 Sum_probs=142.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCc------------eEE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~------------~~~ 94 (239)
++++|++++|+ +..+|+|+||++.+||+++|+|+||||||||+++|+|+ .+|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 46899999995 45799999999999999999999999999999999999 5899999998763 137
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
+|++|++... ...+ +.+.+ .....+|||||+||++|||||+.+|++||||||
T Consensus 80 ~~v~q~~~~~--~~~~----------------~~~~l----------~~~~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 80 FLAFQYPPEI--PGVK----------------NADFL----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred EEeecChhhc--cCcc----------------HHHHH----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8888875311 1111 11111 123368999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhh-hcCeEEEEeCCeEEeeCCChh
Q 026376 175 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISG-SVEELWVVSEGKATPFHGTFH 230 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~-~~d~i~~l~~G~i~~~~g~~~ 230 (239)
|++||+.++..+.+.|.+. +.|||++||+++++.. +||++++|++|++. ..|+.+
T Consensus 132 t~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 190 (200)
T cd03217 132 DSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIV-KSGDKE 190 (200)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEE-EEccHH
Confidence 9999999999888877654 5699999999999988 79999999999997 567544
No 286
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.5e-44 Score=298.27 Aligned_cols=187 Identities=24% Similarity=0.335 Sum_probs=148.9
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEE
Q 026376 30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI 94 (239)
Q Consensus 30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~ 94 (239)
.+.|++++|+++..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999975567999999999999999999999999999999999999999999988652 248
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++.. + ..+...++.... .....+..++++.+++.+. ..++++..||||||||++|||||+.
T Consensus 82 ~~~~q~~~~-~--~~t~~~nl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 82 AYAAQKPWL-L--NATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEcCCCcc-c--cccHHHHHhhcC-cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 999998642 1 234455443221 1223344556666665321 1235688999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-----HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQ-----GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~-----~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
+|++|||||||++||+.++..+++ .+++.+.|||++||+.+++. .||++++|++|.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999887766 33344679999999999986 699999999874
No 287
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.2e-44 Score=338.41 Aligned_cols=201 Identities=23% Similarity=0.367 Sum_probs=169.4
Q ss_pred eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
.++++||+|+|++ +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 5999999999964 356899999999999999999999999999999999999999999998873 3599
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhcc
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~ 164 (239)
|++|++.. +..+..+++....+ ..+++++.++++.+++.+...+ .....||||||||++||||+++
T Consensus 410 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 410 LVSQDVVL---FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred EEccCccc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999752 34456666543322 4667888899998887532221 1235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|+++||||||++||..+.+.+.+.|.+. ++|+|+|||+...+. .||+|++|++|++. ..|+++++.
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~-~~g~~~~l~ 555 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIV-ERGTHNELL 555 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEE-eeCCHHHHH
Confidence 99999999999999999999999988775 569999999998875 69999999999997 578888764
No 288
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.1e-44 Score=345.63 Aligned_cols=203 Identities=25% Similarity=0.420 Sum_probs=170.1
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..++++||+|+|+++ +.+|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 359999999999643 46899999999999999999999999999999999999999999998874 358
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++.. +..+..+++....+..+.+++.++++..++.+.. ......+||||||||++|||||++
T Consensus 534 ~~v~q~~~l---f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 534 GVVLQENVL---FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred eEEccCCee---hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 999998642 3345666664333345677777888777764322 123357899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|++|||||||++||+.+...+.+.+.+. +.|+|++||+++.+.. ||++++|++|+++ ..|+++++.+
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~-~~g~~~~l~~ 680 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIA-ESGRHEELLA 680 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEE-EeCCHHHHHH
Confidence 99999999999999999999999988765 5699999999999874 9999999999997 6799888754
No 289
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.5e-44 Score=292.96 Aligned_cols=170 Identities=26% Similarity=0.366 Sum_probs=141.7
Q ss_pred eEEEEeeEEEcCC-----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecCc--------e
Q 026376 28 IISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK--------V 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~-----~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~--------~ 92 (239)
.|+++|++++|++ ...+|+++||++++||+++|+||||||||||+++|+|++ +|++|+|.+++. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4899999999964 256999999999999999999999999999999999999 999999988763 3
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
.++|++|++.. ....+..+++... .. ..+||||||||++|||||+.+|+++|||
T Consensus 83 ~i~~~~q~~~~--~~~~t~~~~i~~~-------------~~-----------~~~LS~G~~qrv~laral~~~p~illlD 136 (194)
T cd03213 83 IIGYVPQDDIL--HPTLTVRETLMFA-------------AK-----------LRGLSGGERKRVSIALELVSNPSLLFLD 136 (194)
T ss_pred eEEEccCcccC--CCCCcHHHHHHHH-------------HH-----------hccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 58899987532 1122333322100 00 0189999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHhhhcCeEEEEeCCeEE
Q 026376 173 EPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKAT 223 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~-~~~~~~d~i~~l~~G~i~ 223 (239)
|||++||+.++..+.+.+.++ +.|||++|||++ .+..+||++++|++|++.
T Consensus 137 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence 999999999999888877653 569999999996 788899999999999986
No 290
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.7e-44 Score=305.37 Aligned_cols=193 Identities=25% Similarity=0.366 Sum_probs=157.0
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEEe
Q 026376 30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFS 98 (239)
Q Consensus 30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~~ 98 (239)
+++||++. .+|+|+||+|++|++++|+||||||||||+++|+|++++ +|+|.+++. ..++|++
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 56788875 268999999999999999999999999999999999864 899998763 2389999
Q ss_pred eccCCCCCCCCcHHHHHHHhC-CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc-------CC
Q 026376 99 QHHVDGLDLSSNPLLYMMRCF-PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-------KP 166 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~-------~p 166 (239)
|++.... ..+...++.... ... ..+++.++++.+++.+ ..++++.+||||||||++|||||+. +|
T Consensus 76 q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 76 QQQTPPF--AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred ccCccCC--CccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 9863222 234444433211 111 1346788999999964 4578899999999999999999997 67
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
++|||||||++||+.++..+.+.+++. +.|||++|||++++..+||++++|++|+++ ..|+++++
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 220 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL-ASGRRDEV 220 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999888877643 569999999999999999999999999997 57887765
No 291
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-44 Score=295.81 Aligned_cols=183 Identities=23% Similarity=0.311 Sum_probs=150.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 97 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~ 97 (239)
||+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++. ..++|+
T Consensus 1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 478999999995 456999999999999999999999999999999999999999999998763 258999
Q ss_pred eeccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376 98 SQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~ 176 (239)
+|++.. ....+...++... ........+.++++.+++.. ..++++.+|||||+||++||||++.+|++|||||||+
T Consensus 80 ~q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 80 GHRSGI--NPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred cccccc--CcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 987532 2223444443211 11123456788999999964 4578889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEE
Q 026376 177 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELW 215 (239)
Q Consensus 177 ~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~ 215 (239)
+||+.++..+.+.|++. +.|||++||+..++.. ||.-+
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 99999999988887753 5699999999999975 77643
No 292
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-44 Score=332.92 Aligned_cols=203 Identities=26% Similarity=0.417 Sum_probs=171.4
Q ss_pred CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
..++++||+|.||.+ .++|+|+||+|+|||++|||||||+||||+.++|-.++.|++|+|..++. ..
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 369999999999865 35999999999999999999999999999999999999999999998874 36
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhc
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~ 163 (239)
||++.|+|.. +..+..+++.......++++++.+.+..+.+++. ...+..+||||||||+||||||+
T Consensus 544 Ig~V~QEPvL---Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 544 IGLVGQEPVL---FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred eeeeecccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 9999999853 3455666665444466777787777765543222 12345689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
++|.||||||.||+||.++...+.+.|.+. +.|||+|.|.+..++. ||+|+++++|+++ ..|+++|+..
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl~ 691 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELLS 691 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHhh
Confidence 999999999999999999988888888653 5799999999999984 9999999999997 5798888754
No 293
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-44 Score=291.94 Aligned_cols=170 Identities=23% Similarity=0.327 Sum_probs=140.8
Q ss_pred eEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecCc-------eEEE
Q 026376 28 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK-------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~-------~~~~ 95 (239)
.|+++|+++.|++ ++.+|+++||++++||+++|+||||||||||+++|+|+. +|++|+|.+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 6899999999964 256999999999999999999999999999999999986 489999998763 3589
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt 175 (239)
|++|++.. ....+..+++... ..+ .+|||||+||++|||||+.+|++|||||||
T Consensus 83 ~~~q~~~~--~~~~tv~~~l~~~----------~~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~ 136 (192)
T cd03232 83 YVEQQDVH--SPNLTVREALRFS----------ALL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPT 136 (192)
T ss_pred EecccCcc--ccCCcHHHHHHHH----------HHH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence 99987532 1222333333210 000 089999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHhhhcCeEEEEeC-CeEE
Q 026376 176 NHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSE-GKAT 223 (239)
Q Consensus 176 ~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~-~~~~~~d~i~~l~~-G~i~ 223 (239)
++||+.++..+.+.+.+. +.|||++||+++ .+..+||++++|++ |+++
T Consensus 137 ~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 137 SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 999999999988877653 569999999998 47789999999999 9986
No 294
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7.4e-44 Score=335.78 Aligned_cols=203 Identities=18% Similarity=0.327 Sum_probs=166.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
..++++|++|+|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975456899999999999999999999999999999999999999999998763 3589
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++.. +..+..+++....+..+.+++.++++..++.+. ........||||||||++|||||+.+
T Consensus 413 ~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 413 TVFQDAGL---FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred EEccCCcc---CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999742 234556665433233445566666665544321 12345678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++|||||||++||+.+...+.+.+.+. +.|||+|||+++.+. .||++++|++|+++ ..|+++++.+
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 558 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLI-EKGSFQELIQ 558 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEE-EECCHHHHHH
Confidence 9999999999999999999998888764 569999999999986 59999999999997 5798887754
No 295
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8e-44 Score=333.10 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=166.6
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..++++|++|+|+++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 359999999999643 57899999999999999999999999999999999999999999998763 359
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++.. +..+..+++....+..+.+++.++++..++.+ ........+||||||||++|||||++
T Consensus 395 ~~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 395 GYLPQDVEL---FPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred EEecCCccc---ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 999998742 23455555542222344556666665554421 12234567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
+|++|||||||++||+++...+.+.+.+. +.|+|++||+++.+. .||++++|++|+++ ..|+++++.+.
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~~ 543 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIA-RFGERDEVLAK 543 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-eeCCHHHHhhc
Confidence 99999999999999999999998888764 469999999999775 69999999999997 68999887653
No 296
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-44 Score=286.57 Aligned_cols=157 Identities=31% Similarity=0.563 Sum_probs=133.2
Q ss_pred EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEE
Q 026376 29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 96 (239)
Q Consensus 29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~ 96 (239)
|+++|++++|++. ..+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999643 268999999999999999999999999999999999999999999887632 3677
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~ 176 (239)
++|++.. + ..+..+++ ||+|||||++|||||+.+|++|||||||+
T Consensus 81 ~~~~~~~-~--~~t~~e~l--------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~ 125 (171)
T cd03228 81 VPQDPFL-F--SGTIRENI--------------------------------LSGGQRQRIAIARALLRDPPILILDEATS 125 (171)
T ss_pred EcCCchh-c--cchHHHHh--------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 7776421 1 11111110 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 177 HLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 177 ~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
+||+.++..+.+.+.+. +.|||++|||++++.. ||++++|++|+
T Consensus 126 gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 126 ALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999988888654 4599999999999987 99999999885
No 297
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-43 Score=292.20 Aligned_cols=176 Identities=16% Similarity=0.227 Sum_probs=142.7
Q ss_pred eEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC---CCceeEEecCc----------
Q 026376 28 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK---------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---------- 91 (239)
.+.++|++|.|+. +..+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 5789999999963 3569999999999999999999999999999999999999 89999987663
Q ss_pred eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 92 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 92 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll 171 (239)
..++|++|++.. ....+..+++.... . + . .++++..||+|||||++|||||+.+|++|||
T Consensus 83 ~~i~~~~q~~~~--~~~~tv~~~l~~~~------~----~---~-----~~~~~~~LS~Ge~qrl~laral~~~p~llll 142 (202)
T cd03233 83 GEIIYVSEEDVH--FPTLTVRETLDFAL------R----C---K-----GNEFVRGISGGERKRVSIAEALVSRASVLCW 142 (202)
T ss_pred ceEEEEeccccc--CCCCcHHHHHhhhh------h----h---c-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 248899987532 22234444432110 0 0 0 3467889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CCEEEEE-ecCHHHHhhhcCeEEEEeCCeEE
Q 026376 172 DEPSNHLDLDAVEALIQGLVLF----QGGILMV-SHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~~----~~tii~v-sHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
||||++||+.++..+.+.+.+. +.|+|++ +|+.+.+..+||++++|++|+++
T Consensus 143 DEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 143 DNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 9999999999999888877653 3465555 56678888899999999999986
No 298
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=321.30 Aligned_cols=195 Identities=22% Similarity=0.319 Sum_probs=164.9
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 92 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 92 (239)
..++++++|++|+|+ +..+|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++++ .
T Consensus 5 ~~~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 5 TPPLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ccceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 345899999999995 578999999999999999999999999999999999999999999999875 2
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHHhC-C-C----Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMRCF-P-G----VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~-~-~----~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral 162 (239)
.|..++|+... ....++.++++... + . .+ ..++.++|+.+++... .+.++.+||.||||.|+||||+
T Consensus 84 GI~~V~QEl~L--~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 84 GIATVHQELSL--VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred CcEEEeechhc--cCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHH
Confidence 58999998743 33344555543211 1 1 11 3567789999998633 6789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
..+++|||||||||+|+....+.+++.++ +.|.+||+|||.++++.++||||.+|++|+.+
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v 224 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence 99999999999999999998887766554 55779999999999999999999999999976
No 299
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.5e-43 Score=302.14 Aligned_cols=199 Identities=25% Similarity=0.393 Sum_probs=155.6
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
..+.|+++|+++. + +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++ .++|++|++...
T Consensus 36 ~~~~l~i~nls~~--~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~l~ 110 (282)
T cd03291 36 DDNNLFFSNLCLV--G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSWIM 110 (282)
T ss_pred CCCeEEEEEEEEe--c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccccc
Confidence 3457999999985 2 4589999999999999999999999999999999999999999999877 599999986421
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
..+...++.... .....++.++++.+++.+. ...+++.+||||||||++|||||+.+|++||||||
T Consensus 111 ---~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 111 ---PGTIKENIIFGV-SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ---ccCHHHHhhccc-ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 124444443211 1112233444444444221 12234679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-hh--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 175 SNHLDLDAVEALIQGL-VL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l-~~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++||+.++..+.+.+ .. .+.|||++|||++++. .||++++|++|+++ +.|+++++.+
T Consensus 187 t~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~~ 247 (282)
T cd03291 187 FGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQS 247 (282)
T ss_pred CccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999988887643 32 2579999999999985 79999999999997 6788877653
No 300
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.1e-44 Score=334.45 Aligned_cols=191 Identities=25% Similarity=0.305 Sum_probs=160.4
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
+.++++++|+++.|+ + ..|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++ ..++|++|++...
T Consensus 337 ~~~~l~~~~ls~~~~-~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~~~ 412 (590)
T PRK13409 337 RETLVEYPDLTKKLG-D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIKPD 412 (590)
T ss_pred CceEEEEcceEEEEC-C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEecccccCC
Confidence 356899999999995 3 35899999999999999999999999999999999999999999876 5799999986432
Q ss_pred CCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 026376 105 LDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~ 183 (239)
...++.+++...... .....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 413 --~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~ 489 (590)
T PRK13409 413 --YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR 489 (590)
T ss_pred --CCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 333444444321111 1234567899999997 467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 184 EALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 184 ~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
..+.+.|+++ +.|||+||||++++..+||++++|++ ++.
T Consensus 490 ~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 490 LAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence 9988877654 67999999999999999999999965 664
No 301
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=9.9e-44 Score=297.41 Aligned_cols=181 Identities=30% Similarity=0.454 Sum_probs=148.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEeeccCCCCCCCCcHHHHHHHh-----
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVDGLDLSSNPLLYMMRC----- 118 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q~~~~~~~~~~~~~~~~~~~----- 118 (239)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++........+...++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999874 359999998643222223444433211
Q ss_pred --C--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 026376 119 --F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF 193 (239)
Q Consensus 119 --~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 193 (239)
. . ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTE-LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0 0 112345788999999974 557788999999999999999999999999999999999999999988877643
Q ss_pred ---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 194 ---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 194 ---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+.|||++|||++++..+||+++++ +|+++ ..|+++++.
T Consensus 160 ~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~ 200 (223)
T TIGR03771 160 AGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQ 200 (223)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhc
Confidence 569999999999999999999999 79997 678887764
No 302
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-43 Score=361.21 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=172.7
Q ss_pred CCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEE
Q 026376 26 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI 94 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~ 94 (239)
+.+|+++|+++.|+++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++. ..+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 4589999999999642 57999999999999999999999999999999999999999999998763 249
Q ss_pred EEEeeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
||++|....... .+..+.+. ....+.. ++.+.++++.+++.+ ..++++++||||||||++||+||+.+|+|
T Consensus 2015 Gy~pQ~~~L~~~--LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~-~~dk~~~~LSGGqKqRLslA~ALi~~P~V 2091 (2272)
T TIGR01257 2015 GYCPQFDAIDDL--LTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALIGCPPL 2091 (2272)
T ss_pred EEEeccccCCCC--CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998543222 23333321 1111221 235667899999974 56889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
|||||||+|||+.+++.+.+.+.+ .+.|||++||++++++.+|||+++|++|++. ..|++++++++.
T Consensus 2092 LLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~-~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2092 VLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ-CLGTIQHLKSKF 2161 (2272)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHHh
Confidence 999999999999999998887754 3569999999999999999999999999997 689999887654
No 303
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.9e-43 Score=359.80 Aligned_cols=207 Identities=22% Similarity=0.291 Sum_probs=173.7
Q ss_pred CCeEEEEeeEEEcC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEE
Q 026376 26 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI 94 (239)
Q Consensus 26 ~~~l~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~ 94 (239)
.+.|+++||++.|+ +++.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 45799999999995 3467999999999999999999999999999999999999999999998763 358
Q ss_pred EEEeeccCCCCCCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
||++|++... ...++.+.+. ....+. .++++.++++.+++.+ ..++++++|||||||||+||+||+.+|+|
T Consensus 1006 G~~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1006 GMCPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-KRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred EEEecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986422 2223333332 111121 2346788999999974 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
|||||||+|||+.+++.+.+.|++. +.|||++|||++++..+|||+++|++|+++ ..|++++++++.
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~-~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLY-CSGTPLFLKNCF 1151 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHHHHhc
Confidence 9999999999999999988887664 569999999999999999999999999997 679988876653
No 304
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.4e-43 Score=331.82 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=168.5
Q ss_pred eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
.++++||+++|+++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 58999999999642 46899999999999999999999999999999999999999999998873 359
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++.. +..+..+++....+..+.+++.++++.+++.+.. .......||||||||++||||+++
T Consensus 417 ~~~~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 417 ALVPQDPVL---FAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred eEEccCCcc---ccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 999999752 3456666664333344567788888887764221 112346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|++||||||||+||+.+.+.+.+.+.+. +.|+|+|||+.+.+. .||++++|++|+++ ..|+++++.+
T Consensus 494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~-~~g~~~~l~~ 563 (576)
T TIGR02204 494 DAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIV-AQGTHAELIA 563 (576)
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-eeecHHHHHH
Confidence 99999999999999999999888888765 579999999998876 69999999999997 5788887654
No 305
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-44 Score=346.40 Aligned_cols=204 Identities=27% Similarity=0.427 Sum_probs=172.7
Q ss_pred CeEEEEeeEEEcCCCC--ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 27 PIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~--~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
..++++||+|+||.++ .+|+++||+|++|+.++|+|||||||||++++|.+++.|++|+|.+++. ..
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 4699999999998653 6999999999999999999999999999999999999999999999874 36
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhc
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~ 163 (239)
+|.|.|+|.. +..+..+++....++...+++.++++..+..+.. ......+||||||||+||||||+
T Consensus 429 iglV~QePvl---F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 429 IGLVSQEPVL---FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred cCeeeechhh---hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 9999999842 3456667765555556677787777665543211 12234579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
++|+|||||||||+||+++...+.+.|.+. +.|.|+|+|++..+.. ||+|++|++|+++ +.|+++|+.+.
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~Iv-E~G~h~ELi~~ 577 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIV-EQGTHDELIAL 577 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEE-EecCHHHHHhc
Confidence 999999999999999999999999988764 6799999999999987 9999999999997 68999998653
No 306
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.7e-43 Score=329.48 Aligned_cols=202 Identities=22% Similarity=0.344 Sum_probs=167.5
Q ss_pred eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
.++++|++|+|+++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 58999999999643 46899999999999999999999999999999999999999999998763 3589
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++.. +..+..+++....+..+.+++.++++..++.+.. .......||||||||++|||||+++
T Consensus 393 ~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 393 VVSQTPFL---FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred EEccCCee---ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99998742 2345556654322344566777778777664321 1233568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++|||||||++||+++...+.+.+.+. +.|+|++||+++.+. .||++++|++|++. ..|+++++.+
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 538 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIA-QRGNHDQLAQ 538 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEE-EecCHHHHHH
Confidence 9999999999999999999999888764 579999999999886 59999999999997 6788877653
No 307
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-44 Score=294.77 Aligned_cols=200 Identities=29% Similarity=0.447 Sum_probs=161.1
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 92 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 92 (239)
.+++|+++|+++.|+ ++.+|+|||++|++||.++|+|||||||||||++++|.++|++|.+...++ .
T Consensus 28 ~~~li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 28 NEPLIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CcceEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 457899999999995 568999999999999999999999999999999999999999999876542 3
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHH-------HhCC-C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMM-------RCFP-G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~-------~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
+||++.-.....+....+..+.+. ..+. . ...+++..+++.+|+.+ +++++..+||-||||||.||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~~~~LS~Ge~rrvLiaRA 185 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRPFGSLSQGEQRRVLIARA 185 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCchhhcCHhHHHHHHHHHH
Confidence 577775432111111111111110 1111 1 22456778999999975 7899999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHG 227 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 227 (239)
|+.+|++|||||||+|||...++.+.+.|.+. ..++|+|||..+++..+.++++.+++|+++ ..|
T Consensus 186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~-~~g 255 (257)
T COG1119 186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV-AQG 255 (257)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee-ecc
Confidence 99999999999999999999999998888764 237999999999999999999999999996 444
No 308
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=283.09 Aligned_cols=194 Identities=26% Similarity=0.377 Sum_probs=161.1
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEee
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQ 99 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q 99 (239)
+++.+++++.+|++. ..+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|..+++. .-|.+||
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 367889999999653 248999999999999999999999999999999999999999999988763 5799999
Q ss_pred ccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 100 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++. +.++.+..++.... ..+. ..+.+.+.+..+|+.+ ..++.+.+|||||||||.|||||+.+|++|+|||
T Consensus 82 ~~~--LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~-~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE 158 (259)
T COG4525 82 NEA--LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE 158 (259)
T ss_pred cCc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc-ccccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence 863 33445555544321 1122 2345678899999975 4578899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHhhhcCeEEEEeC--CeEE
Q 026376 174 PSNHLDLDAVEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSE--GKAT 223 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l----~~~~~tii~vsHd~~~~~~~~d~i~~l~~--G~i~ 223 (239)
|+++||.-+++.+.+.| +..++.+++||||.+++.-+++++++|.. |+++
T Consensus 159 PfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv 214 (259)
T COG4525 159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVV 214 (259)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceee
Confidence 99999999888776654 34467899999999999999999999975 6775
No 309
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.6e-43 Score=289.06 Aligned_cols=165 Identities=34% Similarity=0.532 Sum_probs=133.2
Q ss_pred CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEEEEEeeccCCCCC
Q 026376 40 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIAVFSQHHVDGLD 106 (239)
Q Consensus 40 ~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~~~~~q~~~~~~~ 106 (239)
+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++...+
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~- 81 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL- 81 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc-
Confidence 4456999999999999999999999999999999999999999999987652 24899999863111
Q ss_pred CCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376 107 LSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180 (239)
Q Consensus 107 ~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~ 180 (239)
+..+..+++.. ...... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 12244443321 111111 245778899999974 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc---CCEEEEEecCHHH
Q 026376 181 DAVEALIQGLVLF---QGGILMVSHDEHL 206 (239)
Q Consensus 181 ~~~~~l~~~l~~~---~~tii~vsHd~~~ 206 (239)
.++..+.+.+.+. +.|||++|||+++
T Consensus 161 ~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999888877653 5699999999875
No 310
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.8e-43 Score=287.49 Aligned_cols=181 Identities=26% Similarity=0.323 Sum_probs=146.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------eEEEEEeec
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQH 100 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~~~~~~q~ 100 (239)
+|+++|++++|+ ++.+++ +||+|++||+++|+|+||||||||+++|+|+.+|++|+|++++. ..++|++|+
T Consensus 1 ~l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence 478999999995 455655 99999999999999999999999999999999999999998773 247888887
Q ss_pred cCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376 101 HVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179 (239)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD 179 (239)
+. +....+..+++.... .....+++.++++.+++.+ ..++++.+||||||||++||||++.+|+++||||||++||
T Consensus 79 ~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 79 LG--LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD-LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cC--CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh-hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 53 222334444432211 0113456788899999964 4678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeE
Q 026376 180 LDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEEL 214 (239)
Q Consensus 180 ~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i 214 (239)
+.++..+.+.+++ .+.|||++|||.+.+.. +|.+
T Consensus 156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 9999988887753 35799999999998875 6654
No 311
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.2e-42 Score=332.08 Aligned_cols=209 Identities=22% Similarity=0.380 Sum_probs=159.9
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc---CCCceeEEecCce----------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFRSAKV---------- 92 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~---~p~~G~i~~~~~~---------- 92 (239)
..+|+++|++++|+ +..+|+|+||+|.+|+++||+||||||||||||+|+|.. .|++|+|.+..+.
T Consensus 175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 45799999999995 456999999999999999999999999999999999964 4677776432110
Q ss_pred ---------------EEEEEeeccCCCC-CC------------CCcHH----HHHHH---hC-CCCcHHHHHHHHHhcCC
Q 026376 93 ---------------RIAVFSQHHVDGL-DL------------SSNPL----LYMMR---CF-PGVPEQKLRAHLGSFGV 136 (239)
Q Consensus 93 ---------------~~~~~~q~~~~~~-~~------------~~~~~----~~~~~---~~-~~~~~~~~~~~l~~~~l 136 (239)
.+++++|.+.... .. ..... ..+.. .. ....+.++.++|..+|+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 0111222110000 00 00000 00000 00 00123466778888888
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEE
Q 026376 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWV 216 (239)
Q Consensus 137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~ 216 (239)
.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++.|||+||||++++..+||++++
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 65556788999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred EeCCeEEeeCCChhHHHHH
Q 026376 217 VSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 217 l~~G~i~~~~g~~~~~~~~ 235 (239)
|++|++..+.|++++|...
T Consensus 414 l~~g~i~~~~g~~~~~~~~ 432 (718)
T PLN03073 414 LHGQKLVTYKGDYDTFERT 432 (718)
T ss_pred EECCEEEEeCCCHHHHHHH
Confidence 9999998789999887653
No 312
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.2e-43 Score=327.31 Aligned_cols=196 Identities=23% Similarity=0.284 Sum_probs=159.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.++++|++|+|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 5999999999975556999999999999999999999999999999999999999999998764 35899
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc--C--CCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--Q--PMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~--~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
++|++... ..+...+ ....+.+++.++++.+++...... . ...+||||||||++||||++++|++||||
T Consensus 402 v~q~~~lf---~~ti~~n----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD 474 (547)
T PRK10522 402 VFTDFHLF---DQLLGPE----GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD 474 (547)
T ss_pred EecChhHH---HHhhccc----cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99986421 1111111 112345677888998888643211 1 13589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
|||++||+++...+.+.+.+ .+.|+|+|||+++.+. .||++++|++|++.+..|+..+
T Consensus 475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCchh
Confidence 99999999999888777642 3679999999998765 7999999999999877666543
No 313
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.7e-43 Score=303.70 Aligned_cols=206 Identities=21% Similarity=0.289 Sum_probs=174.9
Q ss_pred CCCeEEEEeeEEEcCCC----------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---
Q 026376 25 GPPIISFSDASFGYPGG----------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--- 91 (239)
.++.++.+++.+.|+-+ ..++++|||++.+|+.+||+|++|||||||=++|.++++++ |+|.+.+.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 45689999999999621 24789999999999999999999999999999999999887 99998763
Q ss_pred -----------eEEEEEeeccCCCCCCCCcHHHHHHH---hCC-C----CcHHHHHHHHHhcCCCcccccCCCCCCChHH
Q 026376 92 -----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP-G----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 152 (239)
Q Consensus 92 -----------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 152 (239)
.++..+||+|+..+++..++-.-+.. ... . ...+++.++|+.+|++....+++++++||||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 35899999998888777765443321 111 1 2346788999999999888899999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376 153 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228 (239)
Q Consensus 153 kqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 228 (239)
|||+|||||++.+|++++||||||+||..-+.++++.|++. +-+-+|||||+..+..+||+|++|++|+|+ ..|+
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV-E~G~ 510 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV-EQGP 510 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe-eeCC
Confidence 99999999999999999999999999998888888777653 458999999999999999999999999997 5676
Q ss_pred hhHH
Q 026376 229 FHDY 232 (239)
Q Consensus 229 ~~~~ 232 (239)
.+++
T Consensus 511 ~~~i 514 (534)
T COG4172 511 TEAV 514 (534)
T ss_pred HHHH
Confidence 6543
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8e-43 Score=281.56 Aligned_cols=154 Identities=25% Similarity=0.292 Sum_probs=131.7
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcH
Q 026376 32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNP 111 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~ 111 (239)
.|++++|+ +..++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. .++|++|+..
T Consensus 4 ~~l~~~~~-~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-~i~~~~q~~~--------- 71 (177)
T cd03222 4 PDCVKRYG-VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-TPVYKPQYID--------- 71 (177)
T ss_pred CCeEEEEC-CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-EEEEEcccCC---------
Confidence 58999995 4678888 4999999999999999999999999999999999999998764 4777776431
Q ss_pred HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 026376 112 LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV 191 (239)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 191 (239)
||||||||++|||||+.+|+++||||||++||+.++..+.+.+.
T Consensus 72 ------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~ 115 (177)
T cd03222 72 ------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR 115 (177)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877775
Q ss_pred hc---C-CEEEEEecCHHHHhhhcCeEEEEeCCeEE-eeCCChhHHH
Q 026376 192 LF---Q-GGILMVSHDEHLISGSVEELWVVSEGKAT-PFHGTFHDYK 233 (239)
Q Consensus 192 ~~---~-~tii~vsHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~~ 233 (239)
+. + .|||++|||++++..+||++++|+++..+ ...|.+..++
T Consensus 116 ~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 116 RLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred HHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 43 3 69999999999999999999999887543 1125554443
No 315
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-43 Score=274.03 Aligned_cols=201 Identities=18% Similarity=0.257 Sum_probs=166.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------- 91 (239)
.|.++|+++.| |...+|-||+|+...||.+.++||+|+|||||+|.|.-+..|.+|+..+.+.
T Consensus 2 sirv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 47899999999 5567899999999999999999999999999999999999999999875432
Q ss_pred -eEEEEEeeccCCCCCCCCcHHHHHHHh-------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 92 -VRIAVFSQHHVDGLDLSSNPLLYMMRC-------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 92 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
..+|++||+.... +..++..++... .......++.++|+++.+.+ .+++.+-.|||||+|||+|||||+
T Consensus 81 r~~vgmvfqqy~lw--phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 81 RRNVGMVFQQYNLW--PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHhhhhhhhhhccC--chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceecccchhhhHHHHHHHh
Confidence 3589999986322 223444444321 11123456788999999974 678999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
.+|++||+||||++|||+-..++.+.+++ .|.|-++|||..+++...+.+++.|++|+|+ ..|+.+.|.
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~iv-e~g~a~~ft 229 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE-eecchhhcc
Confidence 99999999999999999977776666655 4668999999999999999999999999997 578776553
No 316
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.9e-43 Score=353.49 Aligned_cols=203 Identities=23% Similarity=0.333 Sum_probs=171.9
Q ss_pred eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC------------------------
Q 026376 28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP------------------------ 81 (239)
Q Consensus 28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p------------------------ 81 (239)
.|+++||+|+|+++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 59999999999742 4699999999999999999999999999999999999998
Q ss_pred ------------------------------CceeEEecCc-----------eEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376 82 ------------------------------SSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120 (239)
Q Consensus 82 ------------------------------~~G~i~~~~~-----------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 120 (239)
++|+|.+++. ..++|++|++.. +..+..+++....+
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L---F~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML---FNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc---ccccHHHHHhcCCC
Confidence 6999998874 369999999753 34567777654434
Q ss_pred CCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376 121 GVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190 (239)
Q Consensus 121 ~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 190 (239)
..+.++++++++..++.+... ......||||||||++|||||+++|+|||||||||+||.++.+.+.+.|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 566788899988887754322 1234679999999999999999999999999999999999999998888
Q ss_pred hhc----CCEEEEEecCHHHHhhhcCeEEEEeC----CeEEeeCCChhHHHH
Q 026376 191 VLF----QGGILMVSHDEHLISGSVEELWVVSE----GKATPFHGTFHDYKK 234 (239)
Q Consensus 191 ~~~----~~tii~vsHd~~~~~~~~d~i~~l~~----G~i~~~~g~~~~~~~ 234 (239)
.+. +.|+|+|||+++.+. .||+|++|++ |+++...|+++++.+
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 764 569999999999987 5999999999 896546899998864
No 317
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-44 Score=278.94 Aligned_cols=191 Identities=21% Similarity=0.340 Sum_probs=160.1
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.++++++.+.- ++.++|+|+||++.+||+++|+||+|||||||+|+++-++.|++|++++.|. ..++|
T Consensus 3 lle~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 3 LLELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred chHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 35666666555 3457999999999999999999999999999999999999999999999874 35889
Q ss_pred EeeccCCCCCCCCcHHHHH----HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 97 FSQHHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
+.|.+... ..++.+++ .......++..+.+.|+++++.+...++++.+||||||||++|+|-|..-|+|||||
T Consensus 82 ~~Q~paLf---g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 82 CAQTPALF---GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred HHcCcccc---ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 99887421 12333322 122234567788899999999988889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
||||+||+.+.+.+.+.+.++ +.+++.||||.+...+.+|++|.+..|++
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999988877766543 56899999999998899999999999876
No 318
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2e-42 Score=287.66 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=142.9
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE-ecCceEEEEEeeccCCCCCCCCcHHHHHH--HhCC
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-RSAKVRIAVFSQHHVDGLDLSSNPLLYMM--RCFP 120 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~-~~~~~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~ 120 (239)
+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|. +++... .+.+.+. +....+..+++. ....
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~--~~~~~~~--l~~~ltv~enl~~~~~~~ 77 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL--PLGANSF--ILPGLTGEENARMMASLY 77 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee--ccccccc--cCCcCcHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999996 554321 1222221 111223333332 1111
Q ss_pred CCcHHHH-HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh--cCCEE
Q 026376 121 GVPEQKL-RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL--FQGGI 197 (239)
Q Consensus 121 ~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~--~~~ti 197 (239)
.....++ ..+.+.+++.. ..++++.+||+|||||++|||||+.+|+++||||||+++|+.++..+.+.+.+ .+.++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~i 156 (213)
T PRK15177 78 GLDGDEFSHFCYQLTQLEQ-CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGL 156 (213)
T ss_pred CCCHHHHHHHHHHHhChhH-HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcE
Confidence 2223332 33345567754 45788999999999999999999999999999999999999998888876643 24589
Q ss_pred EEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 198 LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 198 i~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
|++||+++++..+||++++|++|+++ +.++.++.++.
T Consensus 157 i~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~~ 193 (213)
T PRK15177 157 IVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQATAL 193 (213)
T ss_pred EEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHHHHHH
Confidence 99999999999999999999999997 77888877554
No 319
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.5e-42 Score=308.94 Aligned_cols=193 Identities=21% Similarity=0.343 Sum_probs=165.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
+.+++++++|.|+ +..++++|||+|++||+.||+|+||||||||+++|+|+++|++|+|+++++ ..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4689999999996 678999999999999999999999999999999999999999999999885 359
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
|+++|++.... +.++.+++..... ....+++.++.+++|+.- ..+.++.+||-||||||.|.+||.++
T Consensus 82 GMVhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 82 GMVHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cEEeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHHHHHHHhcC
Confidence 99999975332 2344444432211 123567888999999974 35788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|++|||||||+-|-|...+.+++.+++ .|+|||+|||-++++.++|||+-+|+.|+++
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 999999999999999999988776654 5789999999999999999999999999975
No 320
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.1e-42 Score=322.52 Aligned_cols=186 Identities=28% Similarity=0.465 Sum_probs=157.1
Q ss_pred eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
.++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 59999999999754 36899999999999999999999999999999999999999999998864 2599
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++.. +..+..+++....+..+++++.++++..++.+... .....+||||||||++|||||+++
T Consensus 400 ~v~Q~~~l---f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 400 WVPQHPFL---FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred EEcCCCcc---cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999742 23566666643333446678888888888754322 123568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEE
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l 217 (239)
|+++||||||++||+.+.+.+.+.+.+. +.|+|+|||+++.+. .||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999999999988764 569999999999886 69999875
No 321
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.3e-42 Score=323.92 Aligned_cols=174 Identities=31% Similarity=0.527 Sum_probs=148.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 97 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~ 97 (239)
.++++||+|+|++++.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 5999999999976556999999999999999999999999999999999999999999999873 369999
Q ss_pred eeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccCCC
Q 026376 98 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
+|++.. +..+..+++....+..+++++.++++..++.+.... .....||||||||++|||||+++|+
T Consensus 414 ~Q~~~l---F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 414 AQDAHL---FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred ccCccc---ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 999752 345666776543345577889999999888643221 1235799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDE 204 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~ 204 (239)
+||||||||+||+++...+.+.+.+. +.|+|+|||++
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999988765 56999999984
No 322
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.5e-42 Score=327.80 Aligned_cols=188 Identities=23% Similarity=0.339 Sum_probs=159.6
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
.+++++|+++.|++++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|..+.+..++|++|++...
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~-- 527 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT-- 527 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC--
Confidence 469999999999655579999999999999999999999999999999999999999999988777899999997422
Q ss_pred CCCcHHHHHHHhC-------CCCcHHHHHHHHHhcCCCcccccCC---------CCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 107 LSSNPLLYMMRCF-------PGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 107 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqrv~laral~~~p~lll 170 (239)
..+..+++.... .....+++.++++.+++.+. .+++ ..+||||||||++|||||+++|+++|
T Consensus 528 -~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 528 -LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHI-LEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred -CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHH-HhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 124545443211 12345678889999998643 3333 37899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 171 LDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
|||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||++++|+.
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~-~~d~il~l~~ 653 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK-YHEYLLYMDG 653 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH-hCCEEEEEeC
Confidence 99999999999999999999888889999999999874 7999999963
No 323
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.8e-42 Score=350.07 Aligned_cols=203 Identities=18% Similarity=0.292 Sum_probs=171.1
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..|+++||+++|+++ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+++. .++
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 359999999999543 56999999999999999999999999999999999999999999999873 369
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~ 164 (239)
++++|++.. +..+..+++.. ....+++++.++++..++.+... .....+||||||||++|||||++
T Consensus 1313 ~iVpQdp~L---F~gTIr~NL~~-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1313 SIIPQSPVL---FSGTVRFNIDP-FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred EEECCCCee---eCccHHHHcCC-CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999753 23455555532 22456778888888887754322 12346899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
+|+|||||||||+||.++...+.+.+++. ++|+|+|+|+++.+.. ||+|++|++|+++ ..|+++++.+.
T Consensus 1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~iv-E~Gt~~eLl~~ 1459 (1495)
T PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVL-EYDSPQELLSR 1459 (1495)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHHhC
Confidence 99999999999999999999998888764 5799999999999986 9999999999998 57999887643
No 324
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=3e-43 Score=315.42 Aligned_cols=213 Identities=47% Similarity=0.880 Sum_probs=196.1
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
++|.+.+.|++|.|+++..++++++|-|..++++++|||||+|||||||+++|.+.|..|.|.......++++.|+....
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ 465 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQ 465 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhh
Confidence 46789999999999776679999999999999999999999999999999999999999999887777888888887666
Q ss_pred CCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 026376 105 LDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~ 183 (239)
+++......+++..++. ...+.++.+|.++|+.++....++++||+|||.||.+|++++.+|.+|+|||||||||.+++
T Consensus 466 ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ti 545 (614)
T KOG0927|consen 466 LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETI 545 (614)
T ss_pred cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhH
Confidence 67777778888777664 56778999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376 184 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 184 ~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 237 (239)
..+.+.|.++.++||+||||+.++.++++++|+..+|.+..++|.+..|.+.+.
T Consensus 546 d~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~ 599 (614)
T KOG0927|consen 546 DALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLK 599 (614)
T ss_pred HHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987654
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.5e-42 Score=349.46 Aligned_cols=202 Identities=18% Similarity=0.282 Sum_probs=171.0
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..|+++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+++. .++
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 369999999999644 46999999999999999999999999999999999999999999999873 469
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~ 164 (239)
+++||++.. +..+..+++... ...+++++.++++..++.+.... .....||||||||++|||||++
T Consensus 1316 siVpQdp~L---F~GTIreNLd~~-~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1316 GIIPQAPVL---FSGTVRFNLDPF-NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred EEECCCCcc---ccccHHHHhCcC-CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 999999853 334666665322 23467788899988877543221 2345899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|+|||||||||+||.++...+.+.+++. ++|||+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~Iv-E~Gt~~eLl~ 1461 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVV-EFDTPENLLS 1461 (1622)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999888764 5799999999999985 9999999999997 5799988764
No 326
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.8e-42 Score=325.50 Aligned_cols=202 Identities=23% Similarity=0.326 Sum_probs=160.8
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC--ceeEEecCc-------eEEEEEeeccC
Q 026376 32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--SGTVFRSAK-------VRIAVFSQHHV 102 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~~-------~~~~~~~q~~~ 102 (239)
+|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.+++. ..++|++|+..
T Consensus 72 ~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~ 150 (659)
T PLN03211 72 SDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDI 150 (659)
T ss_pred ccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccc
Confidence 44555663 456999999999999999999999999999999999999985 899998874 25899999864
Q ss_pred CCCCCCCcHHHHHH--HhC--C-CCc----HHHHHHHHHhcCCCccc----ccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 103 DGLDLSSNPLLYMM--RCF--P-GVP----EQKLRAHLGSFGVTGNL----ALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 103 ~~~~~~~~~~~~~~--~~~--~-~~~----~~~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
... ..++.+.+. ... + ... .+++.++++.+|+.+.. .++.++.||||||||++||++|+.+|+||
T Consensus 151 l~~--~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 151 LYP--HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cCC--cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 322 223333321 111 1 111 23467889999996422 13457889999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHH-HHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 237 (239)
+|||||+|||..++..+.+.+++ .+.|||++||+++ .+.++||++++|++|+++ +.|+.++..+.+.
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv-~~G~~~~~~~~f~ 299 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL-FFGKGSDAMAYFE 299 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE-EECCHHHHHHHHH
Confidence 99999999999999988887765 3679999999998 578899999999999997 7899988876654
No 327
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-42 Score=276.56 Aligned_cols=203 Identities=23% Similarity=0.354 Sum_probs=171.1
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~ 93 (239)
++|+++|++++| ++..+++++||++.+||.-+|||||||||||++.+|+|..+|+.|++++.+. ..
T Consensus 4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 579999999999 5678999999999999999999999999999999999999999999998872 35
Q ss_pred EEEEeeccCCCCCCCCcHHHHHH--------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMM--------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 159 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 159 (239)
||.-||.|.-+..+ ++.+++. .......+.++.++|...|+.+ ..++....||.||||++.|+
T Consensus 83 IGRKFQ~PtVfe~l--tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 83 IGRKFQKPTVFENL--TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-ERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred cCccccCCeehhhc--cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-hhhhhhhhhccchhhhhhhh
Confidence 78888887432222 2222221 1112234568999999999975 56788999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+.++++|++||||||++|+-.+.....-+.+++. +.+|++|.||+.|+..+|++|-+|+.|.+. ..|+.+++.+
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL-~EGsld~v~~ 235 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVL-AEGSLDEVQN 235 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecccee-ecccHHHhhc
Confidence 9999999999999999999998877777777665 458999999999999999999999999997 6899988753
No 328
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.4e-42 Score=321.38 Aligned_cols=190 Identities=18% Similarity=0.210 Sum_probs=155.1
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------e
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~ 92 (239)
.++++||+|+|++. ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 59999999999642 25899999999999999999999999999999999999999999998763 3
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC-----CCCCCChHHHHHHHHHHHhccCCC
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqrv~laral~~~p~ 167 (239)
.++|++|++... ..+...+. .+...++++.++++.+++.+..... ....||||||||++||||++.+|+
T Consensus 417 ~i~~v~q~~~lf---~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 417 LFSAIFADFHLF---DDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred hCcEEccChhhh---hhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 589999986421 11111111 1234566788899999987543221 235799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATP 224 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~ 224 (239)
+|||||||++||+++...+.+.+. ..+.|+|+|||+++.+. .||+|++|++|+++.
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVK 550 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE
Confidence 999999999999999988876542 34679999999998775 799999999999863
No 329
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-42 Score=288.41 Aligned_cols=195 Identities=24% Similarity=0.312 Sum_probs=156.6
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEEEEE
Q 026376 33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVF 97 (239)
Q Consensus 33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~~~~ 97 (239)
|+.+++ | ...| +++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|..+++ .++||+
T Consensus 5 ~~~~~l-G-~~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYV 81 (352)
T COG4148 5 NFRQRL-G-NFAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81 (352)
T ss_pred ehhhhc-C-ceEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeE
Confidence 344445 2 2343 689999876899999999999999999999999999999988764 479999
Q ss_pred eeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376 98 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~ 177 (239)
||+...+... ++..++...........+.++.+.+|+. .+.++.+.+|||||||||||+|||+..|++||||||.++
T Consensus 82 FQDARLFpH~--tVrgNL~YG~~~~~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 82 FQDARLFPHY--TVRGNLRYGMWKSMRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred eeccccccce--EEecchhhhhcccchHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 9986432222 2222221111123456788899999997 467899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 178 LDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 178 LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||...+.+++-.+.+. +..|++|||.++++.++||++++|++|++. ..|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~-A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVK-ASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEE-ecCcHHHHhc
Confidence 9999888887666443 457999999999999999999999999997 5688877653
No 330
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-42 Score=305.44 Aligned_cols=232 Identities=47% Similarity=0.787 Sum_probs=210.7
Q ss_pred ccccCCCCcccccCCCCCCCCCeEEEEeeEEEcCCCC-ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 6 EVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~-~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
.+..++.+.+.||.+-.....|.+++.+|+|.|+.+. +++.++++.++.-+.++++|+||+||||++|++.|-..|..|
T Consensus 340 ~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rg 419 (582)
T KOG0062|consen 340 STLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRG 419 (582)
T ss_pred ccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccc
Confidence 3444445566666643444567899999999997665 689999999999999999999999999999999999999999
Q ss_pred eEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 85 TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 85 ~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
.+...++.+++|.+|...+.++...+.++.++..+++..+++++..+..||++.+++.+++.+||||||-||++|.+...
T Consensus 420 i~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 420 IVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred eeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC
Confidence 99999999999999998877777777888888888888999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 237 (239)
+|.+|+||||||+||.++...+.+.|+.+++.||+||||.+|+..+|+.+|+.++|++..+.|..++|.+.+.
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~~ 572 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLG 572 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
No 331
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2e-41 Score=346.01 Aligned_cols=202 Identities=18% Similarity=0.274 Sum_probs=170.6
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..|+++||+++|+++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+++. .++
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 469999999999643 46999999999999999999999999999999999999999999999873 469
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------c----CCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------L----QPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~laral~~ 164 (239)
+++||++.. +..+...++.. +...+++++.++++.+++.+... + .....||||||||++|||||++
T Consensus 1363 ~iVpQdp~L---F~gTIr~NLdp-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1363 TIIPQDPVL---FSGSLRMNLDP-FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred eEECCCCcc---cCccHHHHcCc-ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 999999753 23455555531 22456778889999887753221 1 2346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|+|||||||||+||.++...+.+.+++. ++|||+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~Iv-E~G~~~eLl~ 1508 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVA-EFGAPSNLLQ 1508 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999998888764 5699999999999985 8999999999998 5799988764
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.4e-42 Score=290.99 Aligned_cols=185 Identities=23% Similarity=0.267 Sum_probs=145.0
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE-----------ecCc---------
Q 026376 32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK--------- 91 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~--------- 91 (239)
.|++++|+++..+++|+|+ +.+|++++|+||||||||||+++|+|+++|++|+|. +++.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999644458999995 999999999999999999999999999999999995 3331
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
..++|++|..... . ......+.... .......+.++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus 83 ~~~~~~i~~~~~~~~~~-~--~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 83 LEGDVKVIVKPQYVDLI-P--KAVKGKVGELLKKKDERGKLDELVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hhcccceeeecchhccC-c--hHHHHHHHHHhchhHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1256777764211 1 11111111111 1123456788999999974 457788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
+++||||||++||+.++..+.+.+++ .+.|||++|||++++..+||++++|+ |++
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~ 216 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEP 216 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCC
Confidence 99999999999999998877766654 35799999999999999999999995 444
No 333
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.1e-41 Score=343.48 Aligned_cols=201 Identities=19% Similarity=0.314 Sum_probs=170.8
Q ss_pred eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
.|+++||+++|+++ ..+|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+++. ..++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 59999999999654 35999999999999999999999999999999999999999999998874 3699
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~ 165 (239)
++||++.. +..+...++.. ....+.+++.++++.+++.+.... ....+||||||||++|||||+++
T Consensus 1388 iVpQdp~L---F~gTIreNIdp-~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1388 MIPQDPVL---FDGTVRQNVDP-FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred EECCCCcc---ccccHHHHhCc-ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 99999853 33466666532 224567889999999988643221 22367999999999999999995
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 -PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 -p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|+|||||||||+||.++...+.+.|.+. +.|||+|+|+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~Vv-E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKIIVMDHGAVA-EMGSPRELVM 1533 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999998888764 569999999999987 49999999999997 5799988864
No 334
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.9e-41 Score=273.27 Aligned_cols=149 Identities=24% Similarity=0.329 Sum_probs=125.3
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEeeccCCCCCCCCcHHHHH
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYM 115 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q~~~~~~~~~~~~~~~~ 115 (239)
+.+|+|+||+|++|++++|+||||||||||||+|. +++|++.+.+.. .++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 46899999999999999999999999999999985 368998765431 1222221
Q ss_pred HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHhh-
Q 026376 116 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGLVL- 192 (239)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~--p~llllDEPt~~LD~~~~~~l~~~l~~- 192 (239)
.++++.+++.....++++.+||||||||++|||||+.+ |+++||||||++||+.++..+.+.+++
T Consensus 68 ------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 68 ------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred ------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 46788889864335778899999999999999999999 999999999999999999988887765
Q ss_pred --cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 193 --FQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 193 --~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
.+.|||++||+++++. .||++++|++|+..
T Consensus 136 ~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~~ 167 (176)
T cd03238 136 IDLGNTVILIEHNLDVLS-SADWIIDFGPGSGK 167 (176)
T ss_pred HhCCCEEEEEeCCHHHHH-hCCEEEEECCCCCC
Confidence 4679999999999975 79999999887653
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.8e-41 Score=341.69 Aligned_cols=189 Identities=25% Similarity=0.365 Sum_probs=154.6
Q ss_pred eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-Cc-----------eE
Q 026376 28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AK-----------VR 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-~~-----------~~ 93 (239)
.|+++||+|+|+++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ +. ..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 59999999999743 369999999999999999999999999999999999999999999984 31 25
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhC------------------------------------------------------
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCF------------------------------------------------------ 119 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 119 (239)
++|++|++... ..+..+++....
T Consensus 462 Ig~V~Q~~~LF---~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 462 IGVVSQDPLLF---SNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred ccEecccccch---hccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 89999987422 224444432210
Q ss_pred ---CCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376 120 ---PGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186 (239)
Q Consensus 120 ---~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l 186 (239)
.....+++.++++.+++.+.. ....+.+||||||||++|||||+.+|+||||||||++||+.+...+
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 012345677888888775432 2345789999999999999999999999999999999999999998
Q ss_pred HHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376 187 IQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEG 220 (239)
Q Consensus 187 ~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G 220 (239)
.+.|.+. +.|+|+|||+++.+. .||+|++|++|
T Consensus 619 ~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 619 QKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence 8888764 569999999999985 79999999986
No 336
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-42 Score=285.28 Aligned_cols=192 Identities=26% Similarity=0.377 Sum_probs=151.0
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce----------EEEEEe-eccCCCCCCCCcH
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVFS-QHHVDGLDLSSNP 111 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~~~~~~-q~~~~~~~~~~~~ 111 (239)
.+++||||+|++|++++++|||||||||+||+|+|++.|++|.|.+++.. ++++++ |.....++.....
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 47899999999999999999999999999999999999999999987631 233332 1110011111100
Q ss_pred HHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 026376 112 LLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 187 (239)
Q Consensus 112 ~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 187 (239)
-..+....... -.++...+.+.+++.+. .+.|++.||-|||.|+.||.+|+++|+||+|||||-|||...+..+.
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~-lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGF-LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhh-hhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 00111111122 23556667778888754 57899999999999999999999999999999999999999999998
Q ss_pred HHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 188 QGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 188 ~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
+.++++ +.||+++||+++.+.++||||++|+.|+++ |+|+.+++.++.
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~f 248 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHHh
Confidence 888765 469999999999999999999999999997 899999887764
No 337
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=316.80 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=164.1
Q ss_pred CeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376 27 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 91 (239)
++|+++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999532 36899999999999999999999999999999999999999999988763
Q ss_pred ---eEEEEEeeccCCCCCCCCcHHHHHH--HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376 92 ---VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 92 ---~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral 162 (239)
..++|++|++.... ..+..+++. ..... ...+++.++++.+++.+ ..++++.+||+||+||++|||||
T Consensus 83 ~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 83 LRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-RVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-hhcCCcccCCHHHHHHHHHHHHH
Confidence 24899999874221 123333222 11111 12345778899999974 56788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
+.+|++|||||||++||+.+++.+.+.++++ +.|+|++||+.+.+. .||++++|++|+++ ..|+.++.
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~ 230 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIV-RNPPAQEK 230 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEE-eecCcccc
Confidence 9999999999999999999999888777643 569999999999886 69999999999997 56666543
No 338
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-41 Score=263.96 Aligned_cols=200 Identities=25% Similarity=0.361 Sum_probs=165.4
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 91 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 91 (239)
.|.+++.++++.|++ ..-.+||||++.|||+.+|+|++||||||||+||++-+.|++|+|.+..+
T Consensus 4 ~PLL~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CcceeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 568999999999954 46789999999999999999999999999999999999999999976531
Q ss_pred ------eEEEEEeeccCCCCCCCC----cHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376 92 ------VRIAVFSQHHVDGLDLSS----NPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 158 (239)
..-|++.|+|.+.+.... |.-+.++. ...+.-+..+.++|+.+.+.....+..+.++||||+||+.|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 247999999876654332 22222221 12233456778899999997665666779999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG 227 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 227 (239)
||-|+..|+++++||||.|||..-+..+++.++ +.+-++++||||+..+.-+++|.++|++|++++ .|
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve-~G 234 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE-SG 234 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec-cc
Confidence 999999999999999999999998888877665 446799999999999999999999999999873 44
No 339
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=5.9e-41 Score=295.17 Aligned_cols=171 Identities=27% Similarity=0.351 Sum_probs=140.4
Q ss_pred EECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----H
Q 026376 60 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----E 124 (239)
Q Consensus 60 iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~ 124 (239)
|+||||||||||+|+|+|+++|++|+|.+++. ..++|++|++.. ....+...++.. ...... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYAL--FPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccc--cCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999999999998763 258999998642 222344444321 111111 3
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEE
Q 026376 125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMV 200 (239)
Q Consensus 125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~v 200 (239)
+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+++. +.|||+|
T Consensus 79 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 79 PRVLEALRLVQLEE-FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHcCCcc-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 46788999999974 567889999999999999999999999999999999999999999888777542 5799999
Q ss_pred ecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 201 SHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 201 sHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||++++..+||++++|++|++. ..|+++++.+
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~-~~g~~~~~~~ 190 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIA-QIGTPEEIYE 190 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999997 5788887654
No 340
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.4e-41 Score=324.90 Aligned_cols=202 Identities=26% Similarity=0.381 Sum_probs=173.5
Q ss_pred eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
-++++||+|+||.+ .++|+|+||++++|+.+|||||+||||||.+.+|-.++.|++|.|.+++. .++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 49999999999854 46999999999999999999999999999999999999999999999874 369
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~ 164 (239)
+.|.|+|.. +..+..+++.......+++++.++++..+.++... ..+..+||||||||+|||||+++
T Consensus 1067 ~lVsQEP~L---F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1067 GLVSQEPVL---FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred ceeccCchh---hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 999999853 33466666654333467888888888776643222 23456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|+||||||.||+||.++.+.+.+.|.+. +.|.|+|+|.+..+. .||.|+++++|+|+ +.|+++++.+
T Consensus 1144 nPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq-naD~I~Vi~~G~Vv-E~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ-NADVIAVLKNGKVV-EQGTHDELLA 1213 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh-cCCEEEEEECCEEE-ecccHHHHHh
Confidence 99999999999999999999999999764 679999999999997 59999999999997 6899999876
No 341
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-40 Score=263.50 Aligned_cols=153 Identities=35% Similarity=0.566 Sum_probs=125.7
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCc
Q 026376 31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN 110 (239)
Q Consensus 31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~ 110 (239)
++|+++.|++ ..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|++++... . .. .
T Consensus 2 ~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~-~--------~~----~ 67 (157)
T cd00267 2 IENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI-A--------KL----P 67 (157)
T ss_pred eEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc-c--------cC----C
Confidence 6899999954 4699999999999999999999999999999999999999999998776310 0 00 0
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376 111 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190 (239)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 190 (239)
.. .....++.. .+||+||+||++|||+++.+|++++|||||++||..++..+.+.+
T Consensus 68 -------------~~---~~~~~i~~~--------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l 123 (157)
T cd00267 68 -------------LE---ELRRRIGYV--------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123 (157)
T ss_pred -------------HH---HHHhceEEE--------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 00 000011110 019999999999999999999999999999999999999888877
Q ss_pred hhc---CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 191 VLF---QGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 191 ~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
.+. +.|+|++||+++++..+||+++++++|+
T Consensus 124 ~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 124 RELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 653 3599999999999999999999999875
No 342
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-40 Score=289.11 Aligned_cols=206 Identities=24% Similarity=0.360 Sum_probs=167.9
Q ss_pred CCCeEEEEeeEEEcC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----
Q 026376 25 GPPIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----- 91 (239)
..++|+++|+++.|. +...++++|||+|++||.+||+|+||||||-..+.|+|+++. -+|+|.+++.
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 356899999999994 234689999999999999999999999999999999999875 3688988763
Q ss_pred ----------eEEEEEeeccCCCCCCCCcHHHHH---HHhCCC----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHH
Q 026376 92 ----------VRIAVFSQHHVDGLDLSSNPLLYM---MRCFPG----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQ 152 (239)
Q Consensus 92 ----------~~~~~~~q~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGq 152 (239)
.+|+++||+|...+++..+.-..+ ...+.+ ..+.++.++|+.+|+.+. ..+.++++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 269999999875555433322111 122222 345678889999999643 2456789999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376 153 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228 (239)
Q Consensus 153 kqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 228 (239)
||||+||.||+.+|++||.||||.+||..-+.++++.|++. +.++++||||+..+.++||||++|.+|+++ ..|+
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv-E~~~ 241 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV-ETGT 241 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe-ecCc
Confidence 99999999999999999999999999999888888777643 669999999999999999999999999997 4565
Q ss_pred hhH
Q 026376 229 FHD 231 (239)
Q Consensus 229 ~~~ 231 (239)
.++
T Consensus 242 t~~ 244 (534)
T COG4172 242 TET 244 (534)
T ss_pred HHH
Confidence 543
No 343
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.1e-40 Score=293.76 Aligned_cols=207 Identities=24% Similarity=0.393 Sum_probs=173.0
Q ss_pred CCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 26 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
...|.++++++.-|+. +++++++||++.+||.++||||||||||||.|+|.|..+|.+|.|..++. ..
T Consensus 332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~h 411 (580)
T COG4618 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411 (580)
T ss_pred CceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccc
Confidence 3469999999977654 47999999999999999999999999999999999999999999998763 46
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc------C----CCCCCChHHHHHHHHHHHhc
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL------Q----PMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~----~~~~LSgGqkqrv~laral~ 163 (239)
+||+||+... +..+..+++.+.....+.+++.++.+..+.++-... . -...||||||||++|||||.
T Consensus 412 iGYLPQdVeL---F~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY 488 (580)
T COG4618 412 IGYLPQDVEL---FDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY 488 (580)
T ss_pred cCcCccccee---cCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc
Confidence 9999998632 346777888776556677777777666665432211 1 23579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 237 (239)
.+|.+++||||-++||.+....+.+.+. ..++|+|+|||.+..+. .+|+|++|++|++. ..|+.+|+..++.
T Consensus 489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~-~FG~r~eVLa~~~ 563 (580)
T COG4618 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIA-AFGPREEVLAKVL 563 (580)
T ss_pred CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHH-hcCCHHHHHHHhc
Confidence 9999999999999999999988877664 45789999999999886 69999999999997 4599999887654
No 344
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.7e-40 Score=334.05 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=169.0
Q ss_pred CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..|+++||+++|++ .+.+|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.+++. .++
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 46999999999964 3579999999999999999999999999999999999997 7999998873 369
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~ 164 (239)
+|+||++.. +..+...++.. ....+++++.++++.+++.+..... ....||||||||++|||||++
T Consensus 1295 s~IpQdp~L---F~GTIR~NLdp-~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1295 GVIPQKVFI---FSGTFRKNLDP-YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred EEEeCCCcc---CccCHHHHhCc-ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 999999853 33566666532 2234678899999999885432221 224799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|+|||||||||+||.++...+.+.|++. ++|||+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~iv-E~g~p~~Ll~ 1440 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVK-QYDSIQKLLN 1440 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEE-EeCCHHHHHc
Confidence 99999999999999999999999988764 5699999999999875 9999999999998 4688888763
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.6e-40 Score=310.71 Aligned_cols=184 Identities=20% Similarity=0.263 Sum_probs=148.6
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE-----------ecCc---------
Q 026376 32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK--------- 91 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~--------- 91 (239)
++++++|+++..+|++++ .+++|++++|+||||||||||+|+|+|+++|++|+|. +++.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 348899964456899999 9999999999999999999999999999999999996 4431
Q ss_pred ----eEEEEEeeccCCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 92 ----VRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
..+++.+|....... +..+..+.+.. .....++.++++.+++.. ..++++.+|||||||||+||+||+.+|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~---~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKK---VDERGKLDEVVERLGLEN-ILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHh---hhHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 235666664321111 11233333321 112456788999999964 568899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEG 220 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G 220 (239)
++|||||||++||+.++.++.+.++++ +.|||+||||++++..+||++++|+++
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999888877665 789999999999999999999999763
No 346
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-40 Score=290.48 Aligned_cols=220 Identities=45% Similarity=0.860 Sum_probs=196.6
Q ss_pred ccccCCCCCCCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEE
Q 026376 15 FEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRI 94 (239)
Q Consensus 15 ~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~ 94 (239)
|.||.|+. -.+|+|-+.+|+|.|++.+++|++++|-|.-...+||+||||.||||||++|.|-+.|..|+...+.+.+|
T Consensus 574 F~FPep~~-L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~i 652 (807)
T KOG0066|consen 574 FQFPEPTK-LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRI 652 (807)
T ss_pred EecCCCCC-CCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeee
Confidence 44544432 24678999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
|++.|.....++...++..++.+.+ +.+.+.++..|..||+..+...-.+..|||||+.||++|-.-+..|+|||||||
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 9999987666666778888877665 567889999999999976655567899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 175 SNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
||+||++++..+.+.++++++.|||||||-.++.+..-..|++++..|-..+|.+++|.+..
T Consensus 732 TNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEV 793 (807)
T KOG0066|consen 732 TNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEV 793 (807)
T ss_pred CCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHH
Confidence 99999999999999999999999999999999988777899999988888899999998654
No 347
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-39 Score=261.43 Aligned_cols=208 Identities=21% Similarity=0.341 Sum_probs=167.6
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCc------------e
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAK------------V 92 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~------------~ 92 (239)
.+|+++||+.+..+++.+|++|||+|++||+.+|+||||||||||.++|+|. +++++|+|.+++. .
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 4799999999995434799999999999999999999999999999999997 4789999998874 3
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHHh----CCC-----CcHHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHHHh
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMRC----FPG-----VPEQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAKIT 162 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~laral 162 (239)
.+...+|.|....-+ +...++... ... ....++++.++.+++.+..++|.+. .+|||||+|..|+.++
T Consensus 82 GifLafQ~P~ei~GV--~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~ 159 (251)
T COG0396 82 GIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL 159 (251)
T ss_pred CCEEeecCCccCCCe--eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence 577888987533222 222222211 111 2245678899999998877777764 5999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHH---HHhhcCCEEEEEecCHHHHhhhc-CeEEEEeCCeEEeeCCChhHHHHHhhc
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQ---GLVLFQGGILMVSHDEHLISGSV-EELWVVSEGKATPFHGTFHDYKKMLQS 238 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~---~l~~~~~tii~vsHd~~~~~~~~-d~i~~l~~G~i~~~~g~~~~~~~~~~~ 238 (239)
+.+|++.|||||-||||..+.+.+.+ .+++.+.++++|||....+..+- |++.+|-+|+|+ ..|.+ ++.++++.
T Consensus 160 ~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv-~sG~~-el~~~le~ 237 (251)
T COG0396 160 LLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV-KSGDP-ELAEELEE 237 (251)
T ss_pred hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE-ecCCH-HHHHHHHH
Confidence 99999999999999999998877655 44555779999999999888653 999999999997 68888 77666553
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.2e-39 Score=328.94 Aligned_cols=199 Identities=22% Similarity=0.336 Sum_probs=162.2
Q ss_pred eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
.++++|+++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++..
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l--- 710 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAWI--- 710 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCccc---
Confidence 69999999999643 4699999999999999999999999999999999999999999999876 59999999752
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376 107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176 (239)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~ 176 (239)
+..+..+++.... ..+.++..++++.+++.++ .......+||||||||++||||++.+|+++||||||+
T Consensus 711 ~~~Ti~eNI~~g~-~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 711 QNDSLRENILFGK-ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred cCCcHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 2345666654221 2234444444444433211 1235578999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhh-----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 177 HLDLDAVEALIQGLVL-----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 177 ~LD~~~~~~l~~~l~~-----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+||+.+...+.+.+.+ .+.|+|+|||+++.+.. ||+|++|++|++. ..|+++++.+
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~-~~g~~~~l~~ 850 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKIS-EMGSYQELLQ 850 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEE-eeCCHHHHHh
Confidence 9999999999887742 24699999999999875 9999999999997 6798887753
No 349
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4e-39 Score=265.79 Aligned_cols=190 Identities=28% Similarity=0.344 Sum_probs=148.7
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHH--HHHhC
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY--MMRCF 119 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~--~~~~~ 119 (239)
..+|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|..+++.. ++..-. ..+....+..++ +....
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~--~li~lg-~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA--PLIELG-AGFDPELTGRENIYLRGLI 116 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe--hhhhcc-cCCCcccchHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999887632 211110 111111222222 11112
Q ss_pred CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---
Q 026376 120 PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL--- 192 (239)
Q Consensus 120 ~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~--- 192 (239)
.+. -.+.++++.+..+|. +..++|++++|-||+-|+++|.|...+|++||+||-.+..|+.-++.-.+.+.+
T Consensus 117 ~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~ 195 (249)
T COG1134 117 LGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE 195 (249)
T ss_pred hCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH
Confidence 222 244566777777775 456899999999999999999999999999999999999999876655554443
Q ss_pred cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 193 FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 193 ~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
.+.|||+||||++.+.++||++++|++|++. +.|++++..+..
T Consensus 196 ~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~-~~G~~~~vi~~Y 238 (249)
T COG1134 196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIR-MEGSPEEVIPAY 238 (249)
T ss_pred cCCEEEEEECCHHHHHHhcCeeEEEeCCEEE-EcCCHHHHHHHH
Confidence 3579999999999999999999999999997 789998876654
No 350
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.3e-39 Score=328.48 Aligned_cols=201 Identities=21% Similarity=0.344 Sum_probs=164.5
Q ss_pred CeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 27 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 27 ~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
..++++|++|+|++ ++++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|.+.. -+..++|++|++..
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~L- 690 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSWI- 690 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCcccc-
Confidence 35999999999964 256899999999999999999999999999999999999999987642 23469999999853
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
++.+..+++.... ..+++++.++++.+++.++.. .....+||||||||++||||+.++|+|+|||||
T Consensus 691 --f~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 691 --FNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred --ccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3456666665322 346778888888887754332 123457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-Hhh--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 175 SNHLDLDAVEALIQG-LVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 175 t~~LD~~~~~~l~~~-l~~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||+||.++...+++. +.. .++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 768 tSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~-~~Gt~~eL~~ 828 (1495)
T PLN03232 768 LSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIK-EEGTFAELSK 828 (1495)
T ss_pred ccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEE-EecCHHHHHh
Confidence 999999998877665 333 3579999999999876 59999999999997 6899988753
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.5e-39 Score=328.49 Aligned_cols=200 Identities=22% Similarity=0.365 Sum_probs=165.6
Q ss_pred CeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc-eeEEecCceEEEEEeeccCC
Q 026376 27 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAKVRIAVFSQHHVD 103 (239)
Q Consensus 27 ~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~~~~~~~q~~~~ 103 (239)
..++++|++|+|+. ++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++ |+|...+ .++|++|+++.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~--~Iayv~Q~p~L 690 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG--TVAYVPQVSWI 690 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC--eEEEEcCcccc
Confidence 35999999999964 2568999999999999999999999999999999999999999 9998643 69999999853
Q ss_pred CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 104 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++.+..+++.... ..+++++.++++.+++.++.. .....+||||||||++||||+.++|+|+||||
T Consensus 691 ---fngTIreNI~fg~-~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 691 ---FNATVRDNILFGS-PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred ---CCCCHHHHHhCCC-cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 3456666665322 346778888888888754322 12345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-Hhh--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 174 PSNHLDLDAVEALIQG-LVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~-l~~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||+||.++.+.+++. +.. .++|+|+|||+++.+. .||+|++|++|++. ..|+++++.+
T Consensus 767 ptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~-e~Gt~~eL~~ 828 (1622)
T PLN03130 767 PLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIK-EEGTYEELSN 828 (1622)
T ss_pred CccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEE-EeCCHHHHHh
Confidence 9999999988777643 443 3579999999999876 59999999999997 6899988754
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.7e-39 Score=323.52 Aligned_cols=200 Identities=17% Similarity=0.283 Sum_probs=161.0
Q ss_pred CCeEEEEeeEEEcC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC---CCceeEEecCc-------e
Q 026376 26 PPIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-------V 92 (239)
Q Consensus 26 ~~~l~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~-------~ 92 (239)
..+++++||++.|+ +++.+|+|||+++++||+++|+|||||||||||++|+|+.+ |++|+|.+++. .
T Consensus 757 ~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred CceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 34689999999994 23579999999999999999999999999999999999997 78999998874 3
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHH--Hh-C-C-CCc----HHHHHHHHHhcCCCcccccCCCC----CCChHHHHHHHHH
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMM--RC-F-P-GVP----EQKLRAHLGSFGVTGNLALQPMY----TLSGGQKSRVAFA 159 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~--~~-~-~-~~~----~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkqrv~la 159 (239)
.++|++|++... ...++.+.+. .. . + ... .++++++++.+++.+ ..++.++ .|||||||||+||
T Consensus 837 ~i~yv~Q~~~~~--~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~d~~v~~~~~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 837 SIGYVQQQDLHL--PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-YADAVVGVPGEGLNVEQRKRLTIG 913 (1394)
T ss_pred ceeeecccccCC--CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-hCCCeeCCCCCCCCHHHhhHHHHH
Confidence 589999985322 2233433332 11 1 1 111 245788999999964 4566666 7999999999999
Q ss_pred HHhccCCC-EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHH-HhhhcCeEEEEeCC-eEEeeCCCh
Q 026376 160 KITFKKPH-IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHL-ISGSVEELWVVSEG-KATPFHGTF 229 (239)
Q Consensus 160 ral~~~p~-llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~-~~~~~d~i~~l~~G-~i~~~~g~~ 229 (239)
++|+.+|+ ||+|||||+|||..+...+++.|++. +.|||+++|+++. +.+.||++++|++| +++ +.|+.
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~~ 988 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGDL 988 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECCc
Confidence 99999997 99999999999999999888877653 6799999999986 45679999999997 886 67775
No 353
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=7.8e-39 Score=303.12 Aligned_cols=192 Identities=21% Similarity=0.283 Sum_probs=155.8
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCce--------EEEEEeeccCCCCCCCC
Q 026376 41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV--------RIAVFSQHHVDGLDLSS 109 (239)
Q Consensus 41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~--------~~~~~~q~~~~~~~~~~ 109 (239)
++.+|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.+++.. .++|++|++... ...
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~--~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFI--PTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccC--ccC
Confidence 456999999999999999999999999999999999999885 7999988753 479999986422 223
Q ss_pred cHHHHHH--HhC--CC-----CcHHHHHHHHHhcCCCcccccCCCC------CCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 110 NPLLYMM--RCF--PG-----VPEQKLRAHLGSFGVTGNLALQPMY------TLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 110 ~~~~~~~--~~~--~~-----~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
++.+++. ... +. ...+++.++++.+|+.+ ..+.+++ .|||||||||+||++|+.+|++++||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 3433332 111 11 11245788999999974 4456655 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 175 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
|+|||..+...+++.+++. +.|||+++|++. .+..+||++++|++|+++ +.|++++..+..
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v-~~G~~~~~~~~f 258 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA-YLGSPDQAVPFF 258 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE-EECCHHHHHHHH
Confidence 9999999999888877653 679999999985 678899999999999997 789988876544
No 354
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4e-39 Score=255.02 Aligned_cols=205 Identities=24% Similarity=0.335 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEcCCC--------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------
Q 026376 27 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------- 91 (239)
+.++++|+++.|... ..+++.|||++.+|+.+||+|.||||||||.|+|+|.++|++|+|.+++.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 468999999988432 23789999999999999999999999999999999999999999998874
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHH---HHHHhC----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLL---YMMRCF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
..|-++||++...+++..+.-. .-.... +....+++.+.|+.+|+-.+.++-++..||-||||||++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 3588999998655544332111 101111 11224577888999999888888899999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||+.+|+++|.||..++||...+.++++... +.|.+.|.|+.++..+..++|.|++|++|++++ .|++.++
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE-~G~t~~v 237 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE-RGSTADV 237 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee-cCChhhh
Confidence 9999999999999999999998887776543 346799999999999999999999999999984 5766554
No 355
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=289.30 Aligned_cols=203 Identities=28% Similarity=0.440 Sum_probs=167.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
-++++||+|.|..++++|+||||++.+|+.+||+||+|+||||++|+|..+....+|.|.+++. ..||.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc
Confidence 5899999999988889999999999999999999999999999999999999999999999884 36999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p 166 (239)
+||+... ++.+.+.++....+....+++.++.+..++++... ..+.-.|||||||||||||+++..|
T Consensus 617 VPQDtvL---FNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 617 VPQDTVL---FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred ccCccee---ecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 9998642 22334444432334455666666666555532211 1234579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
.+++|||.||+||..+.+++...|.+. +.|-|+|.|.+..+- .||.|+++++|.|+ ..|+.+|+..+
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTiv-nAD~ILvi~~G~Iv-ErG~HeeLl~r 762 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIV-NADLILVISNGRIV-ERGRHEELLKR 762 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhee-cccEEEEEeCCeEe-ecCcHHHHHhc
Confidence 999999999999999999988888775 569999999999987 49999999999997 68998887654
No 356
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=6.8e-38 Score=262.66 Aligned_cols=179 Identities=22% Similarity=0.253 Sum_probs=126.2
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHH-HHHhc--------------------CcCCCceeEEecCceEEEEEee
Q 026376 41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAG--------------------ELQPSSGTVFRSAKVRIAVFSQ 99 (239)
Q Consensus 41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl-~~l~G--------------------l~~p~~G~i~~~~~~~~~~~~q 99 (239)
+..+|+++||+|++||+++|+|+||||||||+ ..|.. +..|+.+.+. .....+..|
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 83 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIE---GLSPAIAID 83 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccccc---CCCceEEec
Confidence 45689999999999999999999999999995 44321 1111111110 011234444
Q ss_pred ccCCCCCCCCcHH------HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEE
Q 026376 100 HHVDGLDLSSNPL------LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILL 171 (239)
Q Consensus 100 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llll 171 (239)
++....+...+.. ..+...+......+..++++.+++.....++++.+||||||||++|||||+.+| ++|||
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 4322222222211 011111111122233578999999753467889999999999999999999998 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEE------eCCeEE
Q 026376 172 DEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVV------SEGKAT 223 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l------~~G~i~ 223 (239)
||||++||+.++..+.+.+.+ .+.|||+||||++++. +||++++| ++|+++
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv 223 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIV 223 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEE
Confidence 999999999999888777654 4679999999999975 89999999 889987
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.4e-38 Score=318.34 Aligned_cols=184 Identities=25% Similarity=0.422 Sum_probs=146.7
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 122 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 122 (239)
++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|++... ..+..+++.... ..
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~l~---~~Ti~eNI~~g~-~~ 513 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSWIM---PGTIKDNIIFGL-SY 513 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCccC---CccHHHHHHhcc-cc
Confidence 589999999999999999999999999999999999999999999877 599999997532 235555554211 12
Q ss_pred cHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-Hh
Q 026376 123 PEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG-LV 191 (239)
Q Consensus 123 ~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~ 191 (239)
+..+..++++.+++..+ ....+..+||||||||++||||++.+|+++||||||++||+.+...+.+. +.
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 22233334433333211 12345689999999999999999999999999999999999999988874 43
Q ss_pred hc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 192 LF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 192 ~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
.. +.|+|+|||+++.+.. ||++++|++|++. ..|+++++..
T Consensus 594 ~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~-~~g~~~~l~~ 636 (1490)
T TIGR01271 594 KLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCY-FYGTFSELQA 636 (1490)
T ss_pred HHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEE-EEcCHHHHHh
Confidence 32 5799999999999874 9999999999997 6798887753
No 358
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-38 Score=255.65 Aligned_cols=195 Identities=27% Similarity=0.362 Sum_probs=154.5
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------- 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------- 92 (239)
|+.+.|+.+.|..+ +++|+++|++|.+|+++.|+|.||||||||+++|+|-+.|++|+|.+++..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 45667777776432 469999999999999999999999999999999999999999999988742
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHHhC-C----CC----c---HHHHHHHHHhcC--CCcccccCCCCCCChHHHHHHHH
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMRCF-P----GV----P---EQKLRAHLGSFG--VTGNLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~-~----~~----~---~~~~~~~l~~~~--l~~~~~~~~~~~LSgGqkqrv~l 158 (239)
.++-+||+|........+..+++.... + +. . .+..++.+..++ +. ...+.++.-|||||||-++|
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhccchHHHHHHH
Confidence 367789998655444445555443211 0 11 1 223344555544 44 34567889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHH----HhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQG----LVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~----l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
+.|-++.|+||+|||-|++|||.....+++. +.+.+-|.+||||+++.+..+.+|.++|++|+|+
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Iv 228 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEE
Confidence 9999999999999999999999998877653 3445679999999999999999999999999996
No 359
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-37 Score=315.16 Aligned_cols=198 Identities=19% Similarity=0.265 Sum_probs=158.2
Q ss_pred eEEEEeeEEEcC------------CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCc--
Q 026376 28 IISFSDASFGYP------------GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK-- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~------------~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 91 (239)
.+.++||++.++ +++.+|+|||+++++|++++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999999873 123699999999999999999999999999999999999763 7899988763
Q ss_pred ------eEEEEEeeccCCCCCCCCcHHHHHH--Hh--CC-CCc----HHHHHHHHHhcCCCcccccCCC-----CCCChH
Q 026376 92 ------VRIAVFSQHHVDGLDLSSNPLLYMM--RC--FP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGG 151 (239)
Q Consensus 92 ------~~~~~~~q~~~~~~~~~~~~~~~~~--~~--~~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 151 (239)
..++|++|+.... ...++.+.+. .. .+ ..+ .+.++++++.+++.+ ..++.+ +.||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~--~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHS--PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccccC--CCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHH
Confidence 2489999985422 2234444332 11 11 111 234788999999974 455654 589999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHhhhcCeEEEEeC-CeEEeeC
Q 026376 152 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSE-GKATPFH 226 (239)
Q Consensus 152 qkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~ 226 (239)
|||||+||++|+.+|++|+|||||+|||..+...+++.|++. +.|||+++|+++ .+...||++++|++ |+++ +.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence 999999999999999999999999999999999888877653 679999999998 46778999999996 8886 67
Q ss_pred CCh
Q 026376 227 GTF 229 (239)
Q Consensus 227 g~~ 229 (239)
|+.
T Consensus 1103 G~~ 1105 (1470)
T PLN03140 1103 GPL 1105 (1470)
T ss_pred CCc
Confidence 875
No 360
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-39 Score=286.66 Aligned_cols=203 Identities=30% Similarity=0.453 Sum_probs=159.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--EEE-EEeeccCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--RIA-VFSQHHVDG 104 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--~~~-~~~q~~~~~ 104 (239)
-|.+.+++..|+ ++.+|.+-++++..|..+||+|+||+|||||||+|+- |.|...... ..+ +++-. ...
T Consensus 80 Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~-~~~ 151 (582)
T KOG0062|consen 80 DIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL-QSV 151 (582)
T ss_pred ceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH-hhh
Confidence 488999999995 6789999999999999999999999999999999987 444321110 000 11000 000
Q ss_pred CCCCCcHHHHHHHh---CCCCcHHHHHH-HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376 105 LDLSSNPLLYMMRC---FPGVPEQKLRA-HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180 (239)
Q Consensus 105 ~~~~~~~~~~~~~~---~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~ 180 (239)
+........++... ......+++.. +|..+|++++...+|+.+||||+|.|++|||||..+|++||||||||+||.
T Consensus 152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh
Confidence 11111111122111 11113344555 899999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhhc
Q 026376 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238 (239)
Q Consensus 181 ~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 238 (239)
.++.|+.+.|..++.|+|+||||..|+..+|+.|+.+++-++..|.|++++|.+..+.
T Consensus 232 ~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E 289 (582)
T KOG0062|consen 232 VAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPE 289 (582)
T ss_pred HHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999998899999999876653
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-38 Score=249.50 Aligned_cols=177 Identities=27% Similarity=0.465 Sum_probs=140.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceE----------EEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR----------IAVF 97 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~----------~~~~ 97 (239)
+++.+|++... +...+|.++||++.+||.+.|.||||||||||||+|+|+.+|++|+|++++... .-|+
T Consensus 2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 57889999888 456799999999999999999999999999999999999999999999875421 1122
Q ss_pred eeccCCCCCCCCcHHHHHH---HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 98 SQHHVDGLDLSSNPLLYMM---RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 98 ~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
-.+ ..+-...+.++++. ..+...+...+.++++.+|+.+ ..+.|+.+||-|||+||||||.++..++++|||||
T Consensus 81 GH~--~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 81 GHQ--PGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred hcc--ccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccc-ccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 111 12222233444332 2222245678999999999975 67899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHh
Q 026376 175 SNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLIS 208 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~ 208 (239)
|++||.+++..+...+.. .++-||.+||+.-.+.
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999998887776653 4668999999976654
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-36 Score=309.40 Aligned_cols=184 Identities=21% Similarity=0.361 Sum_probs=146.3
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCC
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 121 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 121 (239)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. ..++|++|++.. +..+..+++.... .
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~l---~~~Tv~enI~~~~-~ 746 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAWI---MNATVRGNILFFD-E 746 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCcc---CCCcHHHHHHcCC-h
Confidence 468999999999999999999999999999999999999999999875 469999998753 2345555553221 1
Q ss_pred CcHHHHHHHH---------Hhc--CCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376 122 VPEQKLRAHL---------GSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190 (239)
Q Consensus 122 ~~~~~~~~~l---------~~~--~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 190 (239)
.+.+++.+++ +.+ |+.. ..++++.+||||||||++|||||+.+|+++||||||++||+.....+++.+
T Consensus 747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t-~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~ 825 (1560)
T PTZ00243 747 EDAARLADAVRVSQLEADLAQLGGGLET-EIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC 825 (1560)
T ss_pred hhHHHHHHHHHHhhhHHHHHHhhccchH-HhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 1222333333 333 4432 335678999999999999999999999999999999999999887776533
Q ss_pred -h-h-cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 191 -V-L-FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 191 -~-~-~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
. . .+.|+|++|||++.+. .||++++|++|++. +.|+++++.+
T Consensus 826 ~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~-~~G~~~~l~~ 870 (1560)
T PTZ00243 826 FLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVE-FSGSSADFMR 870 (1560)
T ss_pred HHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EecCHHHHHh
Confidence 1 2 2579999999999986 69999999999996 7899988753
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.4e-36 Score=307.90 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=150.9
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc----CCCceeEEecCc----------eEEEEEeeccCCCCCC
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSAK----------VRIAVFSQHHVDGLDL 107 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~----~p~~G~i~~~~~----------~~~~~~~q~~~~~~~~ 107 (239)
+.+|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.+++. ..++|++|+.....
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~-- 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP-- 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC--
Confidence 45899999999999999999999999999999999986 579999998763 23899999853222
Q ss_pred CCcHHHHHH---Hh-CC-----CCcH----HH-HHHHHHhcCCCcccccC-----CCCCCChHHHHHHHHHHHhccCCCE
Q 026376 108 SSNPLLYMM---RC-FP-----GVPE----QK-LRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 108 ~~~~~~~~~---~~-~~-----~~~~----~~-~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqrv~laral~~~p~l 168 (239)
..++.+.+. .. .+ .... ++ ++.+++.+|+.+ ..++ .++.|||||||||+||++|+.+|++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 223333321 11 11 1111 12 345789999974 3333 4578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
++|||||+|||..+...+++.|++. +.|||+++|++ +.+.+++|++++|++|+++ +.|++++..+.+
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv-~~G~~~~~~~yF 302 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI-YFGPADKAKQYF 302 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE-EECCHHHHHHHH
Confidence 9999999999999999888877653 56999999996 6888899999999999997 789988765544
No 364
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=8.9e-37 Score=309.06 Aligned_cols=193 Identities=22% Similarity=0.267 Sum_probs=153.0
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCc--------eEEEEEeeccCCCCCCCCc
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK--------VRIAVFSQHHVDGLDLSSN 110 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~~~~~~q~~~~~~~~~~~ 110 (239)
+.+|+|+|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.+++. ..++|++|+...... .+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~--lT 255 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV--MT 255 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc--Cc
Confidence 45899999999999999999999999999999999999998 999998763 358999998532222 23
Q ss_pred HHHHHH---HhCC---------CCc-H---------------------------HHHHHHHHhcCCCccc----ccCCCC
Q 026376 111 PLLYMM---RCFP---------GVP-E---------------------------QKLRAHLGSFGVTGNL----ALQPMY 146 (239)
Q Consensus 111 ~~~~~~---~~~~---------~~~-~---------------------------~~~~~~l~~~~l~~~~----~~~~~~ 146 (239)
+.+.+. .... ... . ..+..+++.+|+.+.. .+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 322221 1100 000 0 1235688899996421 245678
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHhhhcCeEEEEeCCe
Q 026376 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGK 221 (239)
Q Consensus 147 ~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~-~~~~~~~d~i~~l~~G~ 221 (239)
.|||||||||+||++|+.+|++++|||||+|||..+...+++.|++. +.|||+++|++ ..+..++|+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 99999999999999999999999999999999999999988877653 56999999996 57888999999999999
Q ss_pred EEeeCCChhHHHHHhh
Q 026376 222 ATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 222 i~~~~g~~~~~~~~~~ 237 (239)
++ +.|+.++..+..+
T Consensus 416 iv-y~G~~~~~~~yF~ 430 (1470)
T PLN03140 416 IV-YQGPRDHILEFFE 430 (1470)
T ss_pred EE-EeCCHHHHHHHHH
Confidence 97 7899888765543
No 365
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-37 Score=268.67 Aligned_cols=203 Identities=26% Similarity=0.379 Sum_probs=168.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
.+.+.+++|.|.+.+++|+++||++.+|+.++++||+|+||||++++|..++.+.+|.|..+++ ..||.
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~ 341 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence 4789999999987888999999999999999999999999999999999999999999998874 35999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccCC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~p 166 (239)
+||+...+ +.+...+.....+....+++..+++...+.+.... ...-.|||||||||+|||+++.+|
T Consensus 342 VPQDtvLF---NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 342 VPQDTVLF---NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred Ccccceeh---hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 99987532 23444444333344556667777666655432221 123469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
++|+|||.||+||..+.+++...|++. +.|-+++.|.+..+.. ||.|++|++|+|+ +.|+.+++.++
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~-erg~h~~ll~~ 487 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIV-ERGTHEELLAA 487 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEE-ecCcHHHHHHc
Confidence 999999999999999999998888754 6799999999999975 9999999999997 68999988654
No 366
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=278.32 Aligned_cols=200 Identities=28% Similarity=0.450 Sum_probs=159.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC--
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL-- 105 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~-- 105 (239)
-+.++|+++.|. +..+++|+.|++.+|+.+||+|+|||||||+|++|+|-..|..-++.+ ..+.++.....
T Consensus 75 dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~------y~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 75 DVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF------YLLSREIEPSEKQ 147 (614)
T ss_pred cceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch------hhhcccCCCchHH
Confidence 489999999995 567899999999999999999999999999999999999986554421 11111110000
Q ss_pred -----C-CCCcH---HHHHH-------------------H----hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 026376 106 -----D-LSSNP---LLYMM-------------------R----CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 153 (239)
Q Consensus 106 -----~-~~~~~---~~~~~-------------------~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 153 (239)
. ..... +.+.. . ......+.++..+|..+|+...+..+++..||||||
T Consensus 148 av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 0 00000 00000 0 001112345666788888877788899999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-EEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
.|++|||+|..+|++|||||||||||++++.++.+.|.++.. ++|+++|+.+++..+|++|+.+++++.+.|.|+|+.|
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence 999999999999999999999999999999999999999887 8999999999999999999999999988899999999
Q ss_pred HH
Q 026376 233 KK 234 (239)
Q Consensus 233 ~~ 234 (239)
..
T Consensus 308 ~~ 309 (614)
T KOG0927|consen 308 VK 309 (614)
T ss_pred hh
Confidence 64
No 367
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.3e-37 Score=234.78 Aligned_cols=187 Identities=26% Similarity=0.408 Sum_probs=149.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCc---------eEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK---------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~~~~ 95 (239)
++.++||+.+.++ ..+|-++||+|.+||++.|+||+|||||||+..+.|.+.++ +|+++.+++ ..+|
T Consensus 2 ~l~l~nvsl~l~g-~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCCC-ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 6899999999864 57899999999999999999999999999999999998875 799988764 4699
Q ss_pred EEeeccCCC--CCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 96 VFSQHHVDG--LDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 96 ~~~q~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
++||++..+ +++..|....+....+ ...+..+..+|++.|+.+ ..++.+.+||||||.||++-|+|+.+|+.++||
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g-~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD 159 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDG-AFHQDPATLSGGQRARVALLRALLAQPKALLLD 159 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccch-hhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence 999997532 3333332221111111 123455778999999986 456788999999999999999999999999999
Q ss_pred CCCCCCCHHHHH----HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEE
Q 026376 173 EPSNHLDLDAVE----ALIQGLVLFQGGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 173 EPt~~LD~~~~~----~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l 217 (239)
||+|.||..-+. ++...++..+..+|+||||.+.+. ...||+.+
T Consensus 160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 999999987554 555566666778999999999987 56777765
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=242.25 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=153.1
Q ss_pred eEEEEeeEEEcC----CC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------
Q 026376 28 IISFSDASFGYP----GG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~----~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------- 91 (239)
.|.++|++|+|. ++ -++++++||+++.||++++-||+|||||||||+|.|.+.|++|+|+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 588999998883 22 36899999999999999999999999999999999999999999976431
Q ss_pred ---------eEEEEEeeccCCCCCCCCcHHHH----HHHh-CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376 92 ---------VRIAVFSQHHVDGLDLSSNPLLY----MMRC-FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 92 ---------~~~~~~~q~~~~~~~~~~~~~~~----~~~~-~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 156 (239)
..+||+.|... ..+....++. +... .+ .....++..+|.++++.+.++..++.++||||||||
T Consensus 84 pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 24788888531 1111111111 1111 11 123456788999999999899999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
-|||.++.+-+||||||||+.||..++..+++.+.+ .|.++|=|-||.+.-+.+|||++.+..
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999998888887764 356899999999999999999998754
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-35 Score=292.24 Aligned_cols=203 Identities=24% Similarity=0.421 Sum_probs=170.6
Q ss_pred CCCCeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeecc
Q 026376 24 PGPPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH 101 (239)
Q Consensus 24 ~~~~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~ 101 (239)
+.+..++++|.++.++. ....|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|++.+++. ++|++|.+
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--iaYv~Q~p 591 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQP 591 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--EEEecccc
Confidence 34567999999999964 234899999999999999999999999999999999999999999999886 99999998
Q ss_pred CCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 102 VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~p~llll 171 (239)
+. .+.+..+++.-. ...++++.+++++.+.+..++.. .+.-+||||||||++||||+.++++++||
T Consensus 592 WI---~ngTvreNILFG-~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLL 667 (1381)
T KOG0054|consen 592 WI---QNGTVRENILFG-SPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLL 667 (1381)
T ss_pred Hh---hCCcHHHhhhcC-ccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEE
Confidence 53 345566665432 24578888899998888654432 23468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhh-c--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 172 DEPSNHLDLDAVEALIQGLVL-F--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~-~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|.|+|++|.+.-..+.+..-. . ++|+|+|||..+++. .||.|++|++|++. ..|+|+|+.+
T Consensus 668 DDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~-~~Gty~el~~ 731 (1381)
T KOG0054|consen 668 DDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP-HADQIIVLKDGKIV-ESGTYEELLK 731 (1381)
T ss_pred cCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh-hCCEEEEecCCeEe-cccCHHHHHh
Confidence 999999999988877664432 2 579999999999987 59999999999997 6899999874
No 370
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.6e-36 Score=294.03 Aligned_cols=208 Identities=25% Similarity=0.356 Sum_probs=172.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~ 94 (239)
..+.++|+++.|+....+++++||.|++||+.|++|+|||||||++++|+|..+|++|+++..+. ..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 46899999999964333889999999999999999999999999999999999999999988542 249
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
||+||.......++..+...+.....+.. .+.++..++.+++.+ ..+++++.+|||+|+|+++|.|++.+|++++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~-~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGP-YANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChh-hhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 99999864333344333333333222322 345788899999985 5678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 171 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
|||||+|+||.+++.+.+.+.+. +++||++||.+++++.+|||+.+|-+|++. .-|+++++..+.
T Consensus 722 LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~-ciGs~q~LKsrf 789 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLR-CIGSPQELKSRY 789 (885)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeE-EecChHHHHhhc
Confidence 99999999999999888877643 349999999999999999999999999997 569999887654
No 371
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-35 Score=291.63 Aligned_cols=208 Identities=18% Similarity=0.313 Sum_probs=168.6
Q ss_pred CCCCCCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------
Q 026376 22 DRPGPPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------- 91 (239)
Q Consensus 22 ~~~~~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------- 91 (239)
..|....|+++|++.+|..+ ..+|+||||+|++||++||+|..|||||||+.+|..+..|.+|+|.+++.
T Consensus 1132 ~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1132 SWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred CCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHH
Confidence 34445579999999999644 57999999999999999999999999999999999999999999999873
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFA 159 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~la 159 (239)
.+++.+||+|..+ ..+...++- -+...+++++.++|+.+++.+..... -..++|-||||.++||
T Consensus 1212 LRsrlsIIPQdPvLF---sGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1212 LRSRLSIIPQDPVLF---SGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred HHhcCeeeCCCCcee---cCccccccC-cccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHH
Confidence 4799999998532 222222110 11234567888888888775433222 2367999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
|||+++++||+|||.||++|+++-..+.+.+++. ++|||.|.|+++.+.+ ||||+||++|++++ .++|.++...
T Consensus 1288 RALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~E-fdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVE-FDSPAELLSD 1363 (1381)
T ss_pred HHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEee-cCChHHHHhC
Confidence 9999999999999999999999988788888764 5799999999999986 99999999999985 4777776543
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=9.1e-35 Score=238.86 Aligned_cols=154 Identities=22% Similarity=0.291 Sum_probs=123.7
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce---------eEEecC--------ceEEEEEeeccCCCCCCC
Q 026376 46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG---------TVFRSA--------KVRIAVFSQHHVDGLDLS 108 (239)
Q Consensus 46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G---------~i~~~~--------~~~~~~~~q~~~~~~~~~ 108 (239)
++++|++.+| +++|+||||||||||+++|+|+.+|..| ++.+.+ ...+++++|++...+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~--- 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY--- 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce---
Confidence 6789999999 9999999999999999999999877643 343322 246899999874331
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHH
Q 026376 109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVE 184 (239)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~ 184 (239)
.....+++.++++. . ...++++.+||||||||++||++++ .+|+++||||||++||+....
T Consensus 90 -----------~~~~~~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~ 154 (197)
T cd03278 90 -----------SIISQGDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVE 154 (197)
T ss_pred -----------eEEehhhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHH
Confidence 00123466677776 2 2456788999999999999999986 467999999999999999999
Q ss_pred HHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 185 ALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 185 ~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
.+.+.+.+. +.|||+||||++++. +||+++.+..
T Consensus 155 ~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 155 RFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred HHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence 998888764 468999999999875 7999998864
No 373
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-34 Score=270.39 Aligned_cols=205 Identities=21% Similarity=0.324 Sum_probs=166.3
Q ss_pred eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC---CceeEEecCc--------e
Q 026376 28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAK--------V 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~~--------~ 92 (239)
.+.+++++...++. +.+|++||.++++||++||+||+||||||||++|+|.... .+|+|..+++ .
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 47888888887543 5799999999999999999999999999999999999874 7899999983 3
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHH--Hh--CCC-----CcHHHHHHHHHhcCCCcccccCCCC-----CCChHHHHHHHH
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMM--RC--FPG-----VPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVAF 158 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~--~~--~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~l 158 (239)
..+|+.|+.... ...++.+.+. .. .+. ...++++++++.+|+. ..++..++ .+|||||+||+|
T Consensus 105 ~s~yV~QdD~l~--~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 105 ISGYVQQDDVLL--PTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred eeEEEccccccc--ccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHHH
Confidence 589999986432 2233333322 11 111 2346789999999997 45666665 599999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHH-HHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|.-|+.+|.||+|||||+|||..+...+++.|++ .|+|||++=|.+. .+.+..|++++|.+|+++ |.|++++..+
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v-y~G~~~~~~~ 260 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV-YSGSPRELLE 260 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE-EecCHHHHHH
Confidence 9999999999999999999999998888777654 3779999999984 577789999999999996 8999887655
Q ss_pred Hh
Q 026376 235 ML 236 (239)
Q Consensus 235 ~~ 236 (239)
.+
T Consensus 261 ff 262 (613)
T KOG0061|consen 261 FF 262 (613)
T ss_pred HH
Confidence 44
No 374
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=7e-33 Score=236.01 Aligned_cols=183 Identities=23% Similarity=0.297 Sum_probs=129.4
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-----c---C--cCCCceeEEecC--ceEEEEEeeccCCCCCCCCcH
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-----G---E--LQPSSGTVFRSA--KVRIAVFSQHHVDGLDLSSNP 111 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~-----G---l--~~p~~G~i~~~~--~~~~~~~~q~~~~~~~~~~~~ 111 (239)
-|+|+|++|+.|.+++|+|++|||||||++.+. . . ..|..++..... -..+-++.|.+... +...++
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~-~~rs~~ 88 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR-TPRSNP 88 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC-CCCCcH
Confidence 589999999999999999999999999998662 1 1 113333222111 11245555554211 111111
Q ss_pred H------HHHHH--------------------------------------hCCC-CcHHHHHHHHHhcCCCcccccCCCC
Q 026376 112 L------LYMMR--------------------------------------CFPG-VPEQKLRAHLGSFGVTGNLALQPMY 146 (239)
Q Consensus 112 ~------~~~~~--------------------------------------~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~ 146 (239)
. ..+.. .+.. ....++.++++.+|+.....++++.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~ 168 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT 168 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence 1 00000 0000 0123456688899997534578899
Q ss_pred CCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEE---
Q 026376 147 TLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVV--- 217 (239)
Q Consensus 147 ~LSgGqkqrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l--- 217 (239)
+|||||+||++|||+|+.+ |+++||||||+|||+..+..+.+.+.+ .+.|||+||||++++. .||+++.|
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~ 247 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPE 247 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCC
Confidence 9999999999999999996 799999999999999999888777654 4679999999999986 69999999
Q ss_pred ---eCCeEEeeCCCh
Q 026376 218 ---SEGKATPFHGTF 229 (239)
Q Consensus 218 ---~~G~i~~~~g~~ 229 (239)
++|+++ +.|++
T Consensus 248 ~g~~~G~iv-~~Gt~ 261 (261)
T cd03271 248 GGDGGGQVV-ASGTP 261 (261)
T ss_pred cCCCCCEEE-EeCCC
Confidence 789987 56753
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=100.00 E-value=9.1e-33 Score=229.60 Aligned_cols=180 Identities=19% Similarity=0.210 Sum_probs=129.1
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhcC-cCCCceeEEec----------CceEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGID-LDSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRS----------AKVRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~-~Ge~~~iiG~NGsGKSTLl~~l~Gl-~~p~~G~i~~~----------~~~~~~ 95 (239)
.|+++|+. .|.+. .+++|+.. +|++++|+||||||||||+++|++. +.+..+..... ....++
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 47889988 76432 55667654 5899999999999999999999964 33333333211 123578
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHH--HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc---------
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--------- 164 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~--------- 164 (239)
+.+|.......... +...+.+.+.+ .+...++. ...++++.+||+||+||++|||||+.
T Consensus 80 ~~f~~~~~~~~~~r---------~~gl~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~ 149 (213)
T cd03279 80 FTFQLGGKKYRVER---------SRGLDYDQFTRIVLLPQGEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGG 149 (213)
T ss_pred EEEEECCeEEEEEE---------ecCCCHHHHHHhhhhhhcchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC
Confidence 88887522111100 01223333322 23333343 34567889999999999999999984
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 165 -KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 165 -~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
+|+++||||||++||+.+...+.+.+.+. +.|||+||||++++..+||+++++++|.+
T Consensus 150 ~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 150 ARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 67899999999999999998887766543 56999999999999999999999999864
No 376
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=2.1e-33 Score=217.14 Aligned_cols=122 Identities=36% Similarity=0.560 Sum_probs=99.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEEeeccCCCCCCCCcHHH
Q 026376 45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLL 113 (239)
Q Consensus 45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~~q~~~~~~~~~~~~~~ 113 (239)
|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++. ..++|++|++.... ..+...
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--GLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT--TSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccc--cccccc
Confidence 68999999999999999999999999999999999999999988763 35899999853211 122332
Q ss_pred HHHHhCCCCcHHHHHHHHHhcCCCcccccCCC----CCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376 114 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM----YTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176 (239)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~LSgGqkqrv~laral~~~p~llllDEPt~ 176 (239)
+ ....++.++++.+++.+ ..++.+ ..||+|||||++|||||+.+|++||||||||
T Consensus 79 ~-------~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N-------ESDERIEEVLKKLGLED-LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H-------HHHHHHHHHHHHTTHGG-GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c-------ccccccccccccccccc-ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2 23456778888888753 233444 9999999999999999999999999999997
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=1.1e-31 Score=226.94 Aligned_cols=180 Identities=20% Similarity=0.220 Sum_probs=113.1
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC----------------cCCCceeEEecCce
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE----------------LQPSSGTVFRSAKV 92 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl----------------~~p~~G~i~~~~~~ 92 (239)
++++|. ++|+ +..++++++ |++++|+||||||||||+++|+++ +.+.+|... ...
T Consensus 4 i~~~nf-ksy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~--~~~ 74 (243)
T cd03272 4 VIIQGF-KSYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV--MSA 74 (243)
T ss_pred EEEeCc-cCcc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC--ceE
Confidence 556664 3563 445777776 789999999999999999999844 334343100 001
Q ss_pred EEEEEeeccCCCCCCCCcH------HHHHH---HhCC-CCcHHHHHHHHHhcCCCc-------------------ccccC
Q 026376 93 RIAVFSQHHVDGLDLSSNP------LLYMM---RCFP-GVPEQKLRAHLGSFGVTG-------------------NLALQ 143 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~------~~~~~---~~~~-~~~~~~~~~~l~~~~l~~-------------------~~~~~ 143 (239)
.+.+++|++.....+.... +.+.. ..+. ....+++..++..+++.. ...++
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~ 154 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQ 154 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccc
Confidence 2233333321100000000 00000 0000 012233334444444321 12356
Q ss_pred CCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEE
Q 026376 144 PMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 144 ~~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l 217 (239)
++.+||||||||++|||||+ .+|+++||||||++||+.++..+.+.+.+. +.+||++||+.+ +..+||++++|
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~l 233 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYGV 233 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEEE
Confidence 78999999999999999996 368999999999999999999998888765 457788888865 56799999988
Q ss_pred e
Q 026376 218 S 218 (239)
Q Consensus 218 ~ 218 (239)
.
T Consensus 234 ~ 234 (243)
T cd03272 234 K 234 (243)
T ss_pred E
Confidence 5
No 378
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=235.39 Aligned_cols=185 Identities=24% Similarity=0.326 Sum_probs=143.6
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 105 (239)
..+++..++++.|+ + .-|+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ....+++|-||.....
T Consensus 340 ~~lv~y~~~~k~~g-~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~~- 413 (591)
T COG1245 340 DTLVEYPDLKKTYG-D-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISPD- 413 (591)
T ss_pred ceeeecchheeecC-c-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecCC-
Confidence 44567777777774 3 2344344467778999999999999999999999999999998 4566899999976443
Q ss_pred CCCCcHHHHHHHhCCC--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 026376 106 DLSSNPLLYMMRCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183 (239)
Q Consensus 106 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~ 183 (239)
...++...+....+. .+..-..++++-+.+. .+.++++.+|||||.|||+||.||..+++++|||||+++||.+.+
T Consensus 414 -~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 414 -YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred -CCCcHHHHHHHhhhhhcccchhHHhhcCccchH-HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 334444444332221 1122335677888886 467899999999999999999999999999999999999999987
Q ss_pred HHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 184 EALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 184 ~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
..+.+.+++ .++|.++|.||+.++..++||+++++
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 655444443 35699999999999999999999985
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=4.4e-31 Score=243.63 Aligned_cols=188 Identities=26% Similarity=0.340 Sum_probs=155.3
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 105 (239)
+..++++|++..-+++...++++||+|++||.+.|.||||||||||+|+|+|+.+.-+|+|..-....+-|+||.|+..
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p- 468 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP- 468 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC-
Confidence 4679999999999887889999999999999999999999999999999999999999999877666799999998532
Q ss_pred CCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCccccc------CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376 106 DLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLAL------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177 (239)
Q Consensus 106 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~------~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~ 177 (239)
..+..+.+... ....+.+++.++|.++|+.+ +.+ +--..||+|||||+++||.|+++|++++|||-|++
T Consensus 469 --~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~-L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 469 --QGTLREALCYPNAAPDFSDAELVAVLHKVGLGD-LAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred --CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH-HHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 23333333211 11256778899999999853 221 12357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhh--cCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 178 LDLDAVEALIQGLVL--FQGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 178 LD~~~~~~l~~~l~~--~~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
||+++...+.+.+++ .+.|||-|+|...... +.++.+.+.
T Consensus 546 LDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~-~h~~~l~l~ 587 (604)
T COG4178 546 LDEETEDRLYQLLKEELPDATVISVGHRPTLWN-FHSRQLELL 587 (604)
T ss_pred cChHHHHHHHHHHHhhCCCCEEEEeccchhhHH-HHhhheeec
Confidence 999999999999988 4679999999987765 566666554
No 380
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=1.3e-32 Score=216.62 Aligned_cols=196 Identities=26% Similarity=0.363 Sum_probs=152.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~ 96 (239)
++.++||+..- -|-.+|.++..||++-+||||||||||||-.++|+. |-+|+|.+.+.. .-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 57888887642 257889999999999999999999999999999986 568999988742 3567
Q ss_pred EeeccCCCCCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc-------CCCE
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-------KPHI 168 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~-------~p~l 168 (239)
+.|+.... +...++.++....+. .....+.++...+++.+ ...+.+.+|||||.|||-+|...++ ..++
T Consensus 77 LsQqq~p~--f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L 153 (248)
T COG4138 77 LSQQQTPP--FAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL 153 (248)
T ss_pred HhhccCCc--chhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-hhhhhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence 77764322 223344444332222 12345677788899975 4578899999999999999998874 4579
Q ss_pred EEEeCCCCCCCHHHHHH---HHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 169 ILLDEPSNHLDLDAVEA---LIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~---l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||+|||.|+||...... ++..+...|.+|||++||++...+.||++|.++.|++. ..|..+++.
T Consensus 154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~-~~G~~~eVl 220 (248)
T COG4138 154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL-ASGRREEVL 220 (248)
T ss_pred EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEE-eecchhhhc
Confidence 99999999999987654 45556666789999999999999999999999999997 578777653
No 381
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=7.6e-31 Score=223.20 Aligned_cols=163 Identities=23% Similarity=0.236 Sum_probs=119.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCCc-eeEEecC--------------ceEEEEEeeccCCC-------CCCCCcHH
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSA--------------KVRIAVFSQHHVDG-------LDLSSNPL 112 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~~--------------~~~~~~~~q~~~~~-------~~~~~~~~ 112 (239)
..+++|+||||||||||+++|++++.+.. |++...+ ...+++++|++... .....+..
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999999998763 4554322 13688999985211 00011110
Q ss_pred ----HHHH-Hh-C--CCCcHHHHHHHHHhcCCCc-------------------ccccCCCCCCChHHHHHHHHHHHhc--
Q 026376 113 ----LYMM-RC-F--PGVPEQKLRAHLGSFGVTG-------------------NLALQPMYTLSGGQKSRVAFAKITF-- 163 (239)
Q Consensus 113 ----~~~~-~~-~--~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgGqkqrv~laral~-- 163 (239)
.... .. . .....+++.++|+.+++.. ...++++.+||+|||||++|||||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 0000 00 0 1123467888999999851 2335678999999999999999997
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 164 --KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 164 --~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
.+|+++||||||++||+..+.++.+.+++. +.+||++||+.+... .||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 578999999999999999999998888764 558999999966665 799998765
No 382
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.2e-31 Score=229.54 Aligned_cols=191 Identities=23% Similarity=0.313 Sum_probs=148.2
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
.-|+++|+.|.|.....-+..||++|++||++-|+|.||||||||+++++|+++|++|+|.+++.. .+..+
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p---------V~~e~ 391 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP---------VSAEQ 391 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc---------CCCCC
Confidence 359999999999754456789999999999999999999999999999999999999999998752 11111
Q ss_pred CCC------cH------HHHHHHhCCCCcHHHHHHHHHhcCCCccc--cc--CCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376 107 LSS------NP------LLYMMRCFPGVPEQKLRAHLGSFGVTGNL--AL--QPMYTLSGGQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 107 ~~~------~~------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~--~~~~~LSgGqkqrv~laral~~~p~lll 170 (239)
... .+ +..+.......+.+.+..+|+++.+.+.. .+ -....||.|||+|+|+.-||+-+.+|++
T Consensus 392 ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv 471 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILV 471 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEE
Confidence 000 00 00011111124567888888888775321 11 1246799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHH----HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376 171 LDEPSNHLDLDAVEALIQ----GLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG 227 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~----~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 227 (239)
+||=.+.-||.-++++.+ .+++.|+||+.||||-.... +|||++.+++|++++..|
T Consensus 472 ~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 472 LDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG 531 (546)
T ss_pred eehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence 999999999999887765 45778999999999976654 799999999999975443
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5e-30 Score=232.50 Aligned_cols=195 Identities=22% Similarity=0.356 Sum_probs=157.7
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 92 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 92 (239)
+.+.++++|++..- .++|+||++.+||++||.|-=|||+|-|+++|.|..++++|+|.++++ .
T Consensus 260 ~~~~l~v~~l~~~~-----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 260 GEPVLEVRNLSGGG-----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred CCcEEEEecCCCCC-----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 46789999987532 479999999999999999999999999999999999999999999885 2
Q ss_pred EEEEEeeccC-CCCCCCCcHHHHHH-----HhC-----C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 93 RIAVFSQHHV-DGLDLSSNPLLYMM-----RCF-----P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 93 ~~~~~~q~~~-~~~~~~~~~~~~~~-----~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
.++|++.+.. ..+.+..+...++. ... . ....+.++++.+.+++...-.+.++.+||||-||||.|||
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence 5899998753 23333333322221 111 0 1123456778888888665567899999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATP 224 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~ 224 (239)
.|+.+|++|||||||.|+|..++.++.+.++ ..|.+||++|-++.++..+||||++|++|+++.
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999998887766554 457899999999999999999999999999974
No 384
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.97 E-value=2.5e-30 Score=213.60 Aligned_cols=157 Identities=23% Similarity=0.309 Sum_probs=115.7
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHh----cCcCCCceeEEec--------CceEEEEEeecc-CCCCCCCC--cHH
Q 026376 48 LNFGIDLDSRIAMVGPNGIGKSTILKLIA----GELQPSSGTVFRS--------AKVRIAVFSQHH-VDGLDLSS--NPL 112 (239)
Q Consensus 48 isl~i~~Ge~~~iiG~NGsGKSTLl~~l~----Gl~~p~~G~i~~~--------~~~~~~~~~q~~-~~~~~~~~--~~~ 112 (239)
.++++.+| +++|+||||||||||+++|. |...|++|.+... ....+++++|++ ...+.+.. +.+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 34667777 99999999999999999994 9999988765311 124688888876 22221111 222
Q ss_pred HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH------HHHHHHhccCCCEEEEeCCCCCCCHHHHH-H
Q 026376 113 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR------VAFAKITFKKPHIILLDEPSNHLDLDAVE-A 185 (239)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr------v~laral~~~p~llllDEPt~~LD~~~~~-~ 185 (239)
.++. .....++.+.+ ++++.+||+||+|| ++||||++.+|+++||||||++||+..+. .
T Consensus 95 ~~~~----~~~~~~~~~~~----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~ 160 (204)
T cd03240 95 ENVI----FCHQGESNWPL----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES 160 (204)
T ss_pred hcee----eechHHHHHHH----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence 2211 01122333332 56789999999996 78999999999999999999999999988 8
Q ss_pred HHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376 186 LIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEG 220 (239)
Q Consensus 186 l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G 220 (239)
+.+.+.+. +.+||++||+++++. .||+++.|++.
T Consensus 161 l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 161 LAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred HHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 87777553 459999999999875 69999998653
No 385
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1.5e-31 Score=222.20 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=119.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 108 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 108 (239)
|+++|+. .|+ +..++++++| ++++|+||||||||||+++|+-..-.+.... ....+++++|.......++
T Consensus 6 l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~---~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM---RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh---hhhhHHHHhcCCCCCCCCc
Confidence 6788876 784 5568898887 8999999999999999999983211110000 0123445554432111111
Q ss_pred CcH-HHH--------HHHhCC-CCcHHH----HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc----CCCEEE
Q 026376 109 SNP-LLY--------MMRCFP-GVPEQK----LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIIL 170 (239)
Q Consensus 109 ~~~-~~~--------~~~~~~-~~~~~~----~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~----~p~lll 170 (239)
... ... ...... ...... ..++++.+++.+ ..++++..||+|||||++||+|++. +|++++
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~-~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ili 154 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPK-KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYV 154 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccc-ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence 000 000 000000 000111 245566777754 4567789999999999999999974 589999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 171 LDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 171 lDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
|||||++||+.++..+.+.+++. +.++|++||+.+ +..+||++++|..
T Consensus 155 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~-~~~~~d~v~~~~~ 204 (212)
T cd03274 155 MDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNN-MFELADRLVGIYK 204 (212)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHH-HHHhCCEEEEEEe
Confidence 99999999999999998888766 358999999964 5679999999863
No 386
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8e-31 Score=231.07 Aligned_cols=199 Identities=30% Similarity=0.476 Sum_probs=159.8
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC---cCCCceeEEecCceEEEEEeeccCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE---LQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl---~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
-|.++|.+.+-. ++.+|.|-||.|-.|..++++||||-||||||+.|+.- ++|. ..+-++.|+....
T Consensus 264 DIKiEnF~ISA~-Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn---------IDvLlCEQEvvad 333 (807)
T KOG0066|consen 264 DIKIENFDISAQ-GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN---------IDVLLCEQEVVAD 333 (807)
T ss_pred cceeeeeeeecc-cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---------CceEeeeeeeeec
Confidence 488999998874 46789999999999999999999999999999999763 3332 2244555543211
Q ss_pred CCCCC-cHH-----------------------------------HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCC
Q 026376 105 LDLSS-NPL-----------------------------------LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 148 (239)
Q Consensus 105 ~~~~~-~~~-----------------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 148 (239)
-.... +++ ..+........+.+++.+|.-+|++..+.++|...+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF 413 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence 11000 000 000000011235577889999999988889999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376 149 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228 (239)
Q Consensus 149 SgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 228 (239)
|||+|.||+|||||...|.+|.|||||||||.....|+-+.|..|.+|++|||||..|+..+|+.|+.|++.++..|.|+
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred hhHHHHHh
Q 026376 229 FHDYKKML 236 (239)
Q Consensus 229 ~~~~~~~~ 236 (239)
|.-|..+.
T Consensus 494 Y~~FKKmY 501 (807)
T KOG0066|consen 494 YTLFKKMY 501 (807)
T ss_pred HHHHHHHH
Confidence 98876554
No 387
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=1.3e-28 Score=239.83 Aligned_cols=107 Identities=25% Similarity=0.345 Sum_probs=92.5
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 026376 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM 199 (239)
Q Consensus 126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~ 199 (239)
+..+.|+.+|+.....++++.+|||||+||++||++|+.+| +++||||||+|||+..+..+++.|.+ .+.|||+
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34567888899643457889999999999999999999999 99999999999999999888777764 3679999
Q ss_pred EecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376 200 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK 234 (239)
Q Consensus 200 vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 234 (239)
|||+++++. .||+++.| ++|+++ +.|+++++.+
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~~ 927 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVAK 927 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHHh
Confidence 999999986 79999999 689997 6899888754
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.9e-29 Score=204.06 Aligned_cols=204 Identities=20% Similarity=0.305 Sum_probs=157.4
Q ss_pred CeEEEEeeEEEcC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC----ceeEEecC---------
Q 026376 27 PIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS----SGTVFRSA--------- 90 (239)
Q Consensus 27 ~~l~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~----~G~i~~~~--------- 90 (239)
+++.++|++..+. |...+++++|++++.||+-+++|++|||||-..|+|+|..+-. ..+..++.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 4678899988874 2346889999999999999999999999999999999987632 11111111
Q ss_pred ------ceEEEEEeeccCCCCCCCCcHHHHHHHhCC------------CCcHHHHHHHHHhcCCCcc--cccCCCCCCCh
Q 026376 91 ------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFP------------GVPEQKLRAHLGSFGVTGN--LALQPMYTLSG 150 (239)
Q Consensus 91 ------~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg 150 (239)
...++++||++...++.+...-..+....+ .....++.++|.++|+.+. ....++.+|--
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 024889999987666655433222211111 2345678899999999753 34457899999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeC
Q 026376 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFH 226 (239)
Q Consensus 151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 226 (239)
||-|+|+||.|++.+|++||.|||||.+|+.+..++++.|.+. +.||+++|||+..+.++||++-+|.-|+-+ ..
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~-ES 240 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTV-ES 240 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccc-cc
Confidence 9999999999999999999999999999999999998888654 348999999999999999999999999865 34
Q ss_pred CChhH
Q 026376 227 GTFHD 231 (239)
Q Consensus 227 g~~~~ 231 (239)
++.++
T Consensus 241 a~~e~ 245 (330)
T COG4170 241 APSEE 245 (330)
T ss_pred cchhH
Confidence 44443
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.96 E-value=9.2e-29 Score=203.36 Aligned_cols=161 Identities=22% Similarity=0.250 Sum_probs=117.5
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc-----ee----EEecC--ceEEEEEeeccCCCCCCCCcHH
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GT----VFRSA--KVRIAVFSQHHVDGLDLSSNPL 112 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-----G~----i~~~~--~~~~~~~~q~~~~~~~~~~~~~ 112 (239)
.++++++++.+| +.+|+||||||||||+.+|........ |. +...+ ...+.+.+++..... +.
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~----~~- 84 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA----NP- 84 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC----Cc-
Confidence 347788888887 889999999999999999975433321 21 00111 234666676532111 10
Q ss_pred HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376 113 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVEALIQ 188 (239)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral----~~~p~llllDEPt~~LD~~~~~~l~~ 188 (239)
........+.++++. . ...++++.+||+|||||++||+|+ +.+|+++||||||++||+..+..+.+
T Consensus 85 ------~~~~~~~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~ 154 (198)
T cd03276 85 ------LCVLSQDMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD 154 (198)
T ss_pred ------CCHHHHHHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH
Confidence 111223566677776 2 345778999999999999999999 68999999999999999999888887
Q ss_pred HHhhc-----C-CEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 189 GLVLF-----Q-GGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 189 ~l~~~-----~-~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
.+.+. + .+||++||+++.+..+ |+|-+|..++
T Consensus 155 ~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 155 LLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 76542 2 3799999999999875 9999998764
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.96 E-value=4.4e-29 Score=211.93 Aligned_cols=181 Identities=19% Similarity=0.194 Sum_probs=121.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC----------------ce
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----------------KV 92 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~----------------~~ 92 (239)
|+++|. +.|.+ .. +|...++ +++|+||||||||||+++|++++.+..|++.... ..
T Consensus 4 i~l~nf-~~~~~-~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~ 75 (247)
T cd03275 4 LELENF-KSYKG-RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSA 75 (247)
T ss_pred EEEECc-cccCC-Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceE
Confidence 677776 56632 22 2333344 9999999999999999999999988777664221 12
Q ss_pred EEEEEeeccCCC-CCC----CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc---------------------cccCCCC
Q 026376 93 RIAVFSQHHVDG-LDL----SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN---------------------LALQPMY 146 (239)
Q Consensus 93 ~~~~~~q~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------------~~~~~~~ 146 (239)
.+...++..... ..+ ......+. ..........+.++++.+++... ..++++.
T Consensus 76 ~v~~~f~~~~~~~~~~~~~~~~~~~~~~-ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~ 154 (247)
T cd03275 76 YVTAVYEDDDGEEKTFRRIITGGSSSYR-INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD 154 (247)
T ss_pred EEEEEEEcCCCcEEEEEEEEECCceEEE-ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence 233333321100 000 00000000 00112345566788888887421 1123458
Q ss_pred CCChHHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 147 TLSGGQKSRVAFAKITFKK----PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 147 ~LSgGqkqrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
+||+|||||++||++++.+ |+++||||||++||+..+..+.+.+.+. +.+||+|||+.+++ .+||++++|..
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 9999999999999999864 8999999999999999999888877654 46999999998876 57999998864
No 391
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=2.8e-28 Score=246.90 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=90.3
Q ss_pred HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEec
Q 026376 129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF---KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSH 202 (239)
Q Consensus 129 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~---~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsH 202 (239)
++|+.+|+.....++++.+|||||+||++||++|+ .+|++|||||||+|||+.++..+++.|.+ .+.|||+|||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 57888999643257899999999999999999997 69999999999999999999988877654 4679999999
Q ss_pred CHHHHhhhcCeEEEEe------CCeEEeeCCChhHHHH
Q 026376 203 DEHLISGSVEELWVVS------EGKATPFHGTFHDYKK 234 (239)
Q Consensus 203 d~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~ 234 (239)
+++++ .+||++++|. +|+++ ..|+++++..
T Consensus 871 dl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~ 906 (1809)
T PRK00635 871 NMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELIH 906 (1809)
T ss_pred CHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence 99999 7999999996 68886 6899988754
No 392
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.3e-27 Score=232.40 Aligned_cols=105 Identities=25% Similarity=0.359 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEE
Q 026376 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK---KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILM 199 (239)
Q Consensus 126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~ 199 (239)
+..++++.+|+.....++++.+|||||+||++||++|+. +|+++||||||+|||+..+..+++.+.++ +.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345677888986434578899999999999999999997 59999999999999999998888777643 679999
Q ss_pred EecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHH
Q 026376 200 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDY 232 (239)
Q Consensus 200 vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~ 232 (239)
+||+++++. .||++++| ++|+++ +.|+++++
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~l 923 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEEV 923 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHHh
Confidence 999999986 69999999 789997 67988764
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=215.32 Aligned_cols=193 Identities=21% Similarity=0.325 Sum_probs=153.5
Q ss_pred CCCCeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---eEEEEEee
Q 026376 24 PGPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---VRIAVFSQ 99 (239)
Q Consensus 24 ~~~~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~~~~~~~q 99 (239)
+++.++++++|++.-|. +..+++|+||+|..|+-+.|.||||||||+|||+|+|+.+..+|++..-.+ ..+-|+||
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQ 508 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQ 508 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecC
Confidence 44568999999999987 566789999999999999999999999999999999999999999976443 34899999
Q ss_pred ccCCCCCCCCcHHHHHH-------HhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHh
Q 026376 100 HHVDGLDLSSNPLLYMM-------RCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral 162 (239)
.|+... . +..+.+. ......+.+++.+.|+.+++.+-. ...-...||+||+||+++||.+
T Consensus 509 rPYmt~--G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 509 RPYMTL--G-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred CCCccc--c-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 985321 1 2111110 011124456777777777664211 1112467999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEG 220 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G 220 (239)
.++|++-+|||-||++|.+....+.+.+++.+.|.|-|+|...... +-|.++-|+.+
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fHd~~L~~~g~ 642 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FHDYVLRMDGR 642 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hhhEEEEecCC
Confidence 9999999999999999999999999999999999999999998765 77888888754
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.95 E-value=3.7e-27 Score=190.02 Aligned_cols=203 Identities=23% Similarity=0.275 Sum_probs=154.6
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RI 94 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~ 94 (239)
+..+++.++.|+|+...+++-|+|++++.|....++|.||||||||||+|+|-.-.-.|.|...++. ..
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 4569999999999877789999999999999999999999999999999999876666888765531 13
Q ss_pred EEEeeccCC-----C-CCCCCc-HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 95 AVFSQHHVD-----G-LDLSSN-PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 95 ~~~~q~~~~-----~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
.|+--+-.. . ..+... ....+.......+.++-+.+++.+.+. + .-+.+.+|-|||+||.|++-|++.-+
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDId--l-~WRmHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDID--L-RWRMHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheecc--c-eEEEeeccccchhhhHHHHhccccee
Confidence 333221100 0 000000 011121122233456667777777774 2 23578999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
+|||||-|-.||.-++..+++.+++. +.||+.+||-.+-++.+.++++.++.|+++ ..-+++.+
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~-~~l~~~~i 235 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLV-DNLKYQKI 235 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeee-eccccchh
Confidence 99999999999999999999999753 569999999999999999999999999996 33344433
No 395
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=4.8e-27 Score=209.94 Aligned_cols=209 Identities=22% Similarity=0.348 Sum_probs=166.3
Q ss_pred CCCCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------
Q 026376 22 DRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------- 92 (239)
Q Consensus 22 ~~~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------- 92 (239)
..++++.|++++++..-..+...+++|||++..||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.+++..
T Consensus 251 ~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 251 STPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 34567899999999986444567899999999999999999999999999999999999999999988742
Q ss_pred ----EEEEEeeccC-CCCCCCCcHHHHHHH-hCC-------C-Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376 93 ----RIAVFSQHHV-DGLDLSSNPLLYMMR-CFP-------G-VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 154 (239)
Q Consensus 93 ----~~~~~~q~~~-~~~~~~~~~~~~~~~-~~~-------~-~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 154 (239)
.++|+|.+.. ..+.+..+..+++.. .+. . .+ ...+.++++.|++...-...++.+||||.+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 4889998752 223333333333321 111 0 11 2345678888888644445678999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
|+-+||-|..+|++|++.+||.|||..+.+.+.+.+.+ .|.+|+++|-|++++..+||||.+|.+|+++ -..++++
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~-~~~~~~~ 489 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV-GIVPPEE 489 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee-ccccccc
Confidence 99999999999999999999999999999988877653 4678999999999999999999999999996 3444443
No 396
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=7.7e-27 Score=227.54 Aligned_cols=202 Identities=23% Similarity=0.319 Sum_probs=148.6
Q ss_pred eEEEEeeEEEcC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--CCceeEEecCc--------eEE
Q 026376 28 IISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGTVFRSAK--------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--------~~~ 94 (239)
+....|+.+.-+ +.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|.|.++|. +.+
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 445566655442 34579999999999999999999999999999999999643 23577777764 358
Q ss_pred EEEeeccCCCCCCCCcHHHHHH---HhCCCCc----HHHHHHHHHhcCCCccccc----CCCCCCChHHHHHHHHHHHhc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMM---RCFPGVP----EQKLRAHLGSFGVTGNLAL----QPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~l~~~~l~~~~~~----~~~~~LSgGqkqrv~laral~ 163 (239)
||+.|+......++..+-..+. +.....+ .+.++++++.+++.+ ..+ .+.+.||..||+|+.||--|+
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-~~daiVG~~G~GLs~eQRKrLTIgVELv 945 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKE-YADALVGLPGSGLSTEQRKRLTIGVELV 945 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchh-hhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence 9999986432222222211111 1111111 256788999999863 333 344569999999999999999
Q ss_pred cCC-CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHH-HhhhcCeEEEEeCCeEEeeCCChh
Q 026376 164 KKP-HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHL-ISGSVEELWVVSEGKATPFHGTFH 230 (239)
Q Consensus 164 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~-~~~~~d~i~~l~~G~i~~~~g~~~ 230 (239)
.+| .||+|||||||||.++...+++.+++ .|.||+.+-|++.. +.+..|++++|+.|.-..|.|+..
T Consensus 946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 999 99999999999999998877776654 47899999999853 556789999998765444777654
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.94 E-value=2.7e-26 Score=188.92 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=104.3
Q ss_pred eeeeeEEEeCCC-EEEEECCCCCcHHHHHHHHh--------cCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHH
Q 026376 45 FKNLNFGIDLDS-RIAMVGPNGIGKSTILKLIA--------GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM 115 (239)
Q Consensus 45 l~~isl~i~~Ge-~~~iiG~NGsGKSTLl~~l~--------Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 115 (239)
+.++||++.+|+ +++|+||||||||||+|+|+ |...|....+ .++|+.|..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------~~~~~~~~~-------------- 76 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------SLPVFENIF-------------- 76 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------cCcCccEEE--------------
Confidence 457899999996 79999999999999999998 5444432111 122222221
Q ss_pred HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH----HHHh
Q 026376 116 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI----QGLV 191 (239)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~----~~l~ 191 (239)
..++..+ ......+++|+||||++.+++++ .+|+++|+||||+++|+.....+. +.+.
T Consensus 77 ----------------~~lg~~~-~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~ 138 (200)
T cd03280 77 ----------------ADIGDEQ-SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL 138 (200)
T ss_pred ----------------EecCchh-hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1122221 22345689999999999999884 899999999999999999876653 3444
Q ss_pred hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 192 LFQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 192 ~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
+.+.++|++||+.+ +..+||+++.|++|++.
T Consensus 139 ~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 139 ERGALVIATTHYGE-LKAYAYKREGVENASME 169 (200)
T ss_pred hcCCEEEEECCHHH-HHHHHhcCCCeEEEEEE
Confidence 45679999999955 55789999999999985
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.93 E-value=9.3e-26 Score=199.77 Aligned_cols=181 Identities=23% Similarity=0.270 Sum_probs=125.3
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-----------------------
Q 026376 33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS----------------------- 89 (239)
Q Consensus 33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~----------------------- 89 (239)
++..+|+.+...|..+- ...+|.++||+|+||-||||-+|+|+|.+.|.=|+..-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 45667854333333332 457899999999999999999999999999987764210
Q ss_pred -CceEEEEEeeccCC-CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 90 -AKVRIAVFSQHHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 90 -~~~~~~~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
+..++..-+|-... .-.+..+.-..+ .. ........++.+++++. ...++.+++|||||.||+|||.|++++++
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elL-k~--~de~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELL-KK--VDERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHH-Hh--hhhcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccCC
Confidence 00111111111000 000001111100 00 00123466788889996 46789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
++++|||||.||...+....+.++ +-+++||+|.||+..+..++|-|.++-
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999988766555444 336799999999999999999998874
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=2.5e-25 Score=184.94 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=106.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCcee----------EEecCc-eEEEEEeeccCCCCCCC-----
Q 026376 45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT----------VFRSAK-VRIAVFSQHHVDGLDLS----- 108 (239)
Q Consensus 45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~----------i~~~~~-~~~~~~~q~~~~~~~~~----- 108 (239)
++++.+++.+| +.+|+|+|||||||||.+|+-.+-..... +..... ..+-..++.......+.
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 46667777665 88999999999999999987665322211 111111 12222222211111110
Q ss_pred --CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHH
Q 026376 109 --SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDA 182 (239)
Q Consensus 109 --~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral----~~~p~llllDEPt~~LD~~~ 182 (239)
..-...+. .... .+.+..+.-.....+..+.+||+|||||+.+|+++ +.+|+++|+||||++||+..
T Consensus 93 ~~q~~~~~~~----~~~~---~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~ 165 (213)
T cd03277 93 LPQDRVGEFA----KLSP---IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN 165 (213)
T ss_pred EchHHHHHHH----hCCh---HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH
Confidence 00000110 1111 12333333322334567889999999998877554 58999999999999999999
Q ss_pred HHHHHHHHhhc----C-CEEEEEecCHHHHhhhcC--eEEEEeCCe
Q 026376 183 VEALIQGLVLF----Q-GGILMVSHDEHLISGSVE--ELWVVSEGK 221 (239)
Q Consensus 183 ~~~l~~~l~~~----~-~tii~vsHd~~~~~~~~d--~i~~l~~G~ 221 (239)
...+.+.+.+. + .++|++|||+......|| ++++|.+|+
T Consensus 166 ~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 166 ERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99888777543 3 379999999988777776 678888886
No 400
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.93 E-value=2.1e-25 Score=200.33 Aligned_cols=185 Identities=23% Similarity=0.327 Sum_probs=148.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC-
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD- 106 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~- 106 (239)
-|.++|+-.--|.+..++..++|+|++|-.+.|+||||||||+|+|+|.|+.|...|....-...++.|+||.|+....
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence 3788999888877778889999999999999999999999999999999999999999887777789999999853211
Q ss_pred ------CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC---------CCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376 107 ------LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITFKKPHIILL 171 (239)
Q Consensus 107 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqrv~laral~~~p~llll 171 (239)
...+ .+.+.. .+..+++.+.+|..+.++. ...+- -..||||||||+++||.+.++|+.-+|
T Consensus 561 lRDQIIYPdS-~e~~~~--kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalL 636 (728)
T KOG0064|consen 561 LRDQIIYPDS-SEQMKR--KGYTDQDLEAILDIVHLEH-ILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALL 636 (728)
T ss_pred ccceeecCCc-HHHHHh--cCCCHHHHHHHHHHhhHHH-HHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhh
Confidence 1111 122221 2345666777777666542 22221 147999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEE
Q 026376 172 DEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 172 DEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l 217 (239)
||-||++.++....+.+..+..+.+.|-|||.+.... +-++++..
T Consensus 637 DEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk-~h~~ll~~ 681 (728)
T KOG0064|consen 637 DECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK-YHTHLLEF 681 (728)
T ss_pred hhhhcccccchHHHHHHHHHhcCceEEEeecCccHHH-HHHHHHhc
Confidence 9999999999999999999999999999999999876 45555555
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=191.09 Aligned_cols=178 Identities=24% Similarity=0.322 Sum_probs=139.0
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--------cCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHH
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--------LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY 114 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 114 (239)
.+++|+||++++|++++|+|+|||||||||++|+|. ++|++|.|..-....-+.+|-...+.+. ..+.+..
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~tileh 475 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTILEH 475 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC-chhHHHH
Confidence 479999999999999999999999999999999995 6789998876444323344443322222 2233444
Q ss_pred HHHhCCCCcHHHHHHHHHhcCCCccc-ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh--
Q 026376 115 MMRCFPGVPEQKLRAHLGSFGVTGNL-ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-- 191 (239)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-- 191 (239)
+... .-+...+.++|.+.|+++.. ..++.++||.|||.|+.||++++..|.+++.||-.|+||+.+...+.+.+.
T Consensus 476 l~s~--tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel 553 (593)
T COG2401 476 LRSK--TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553 (593)
T ss_pred Hhhc--cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH
Confidence 3322 12345577899999997643 345679999999999999999999999999999999999999887766554
Q ss_pred --hcCCEEEEEecCHHHHhhh-cCeEEEEeCCeEE
Q 026376 192 --LFQGGILMVSHDEHLISGS-VEELWVVSEGKAT 223 (239)
Q Consensus 192 --~~~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~ 223 (239)
+.+.|++++||+.++..++ -|+++.+.-|++.
T Consensus 554 aRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 554 AREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 3567999999999999998 6999888877764
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.91 E-value=2.4e-23 Score=168.38 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 148 LSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 148 LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
||+||+||++|||+++ .+|+++++|||+++||+.....+.+.+.+. +.++|++||+.+.+. .+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999988887777543 468999999998875 7999999865
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.90 E-value=1.2e-23 Score=167.62 Aligned_cols=137 Identities=25% Similarity=0.307 Sum_probs=98.1
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHH
Q 026376 46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ 125 (239)
Q Consensus 46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (239)
...++.+.++.+++|+|||||||||+++.+....-..+|.+......+.++ ..... ...
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~---------~~~~~------------~~~ 70 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGC---------IVAAV------------SAE 70 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCC---------cceee------------EEE
Confidence 445566666679999999999999999998877666655544311100010 00000 000
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEE
Q 026376 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGIL 198 (239)
Q Consensus 126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii 198 (239)
. + ....+||+||+||++||++|+. +|+++|+|||++++|+.....+.+.+.+. +.++|
T Consensus 71 -~--------i------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vi 135 (162)
T cd03227 71 -L--------I------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135 (162)
T ss_pred -E--------e------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 0 0 0112499999999999999986 78999999999999999888777666543 46999
Q ss_pred EEecCHHHHhhhcCeEEEEeC
Q 026376 199 MVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 199 ~vsHd~~~~~~~~d~i~~l~~ 219 (239)
++||+.+... .+|+++.|..
T Consensus 136 i~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 136 VITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred EEcCCHHHHH-hhhhEEEEEE
Confidence 9999999986 5899999864
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.2e-22 Score=173.51 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=65.6
Q ss_pred CCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 146 YTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 146 ~~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
..|||||+||++||++++. +|+++|+||||++||+.....+.+.+.+. +.|+|++||++... .+||+++.|.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEE
Confidence 3599999999999987653 99999999999999999999998888765 45899999999865 68999999987
Q ss_pred Ce
Q 026376 220 GK 221 (239)
Q Consensus 220 G~ 221 (239)
|.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 63
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.89 E-value=1.1e-22 Score=170.13 Aligned_cols=148 Identities=17% Similarity=0.141 Sum_probs=110.1
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEE-EEeeccCCCCCCCCcHHHHHHHhC
Q 026376 41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA-VFSQHHVDGLDLSSNPLLYMMRCF 119 (239)
Q Consensus 41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~-~~~q~~~~~~~~~~~~~~~~~~~~ 119 (239)
...+.+|+++++.++++++|.||||+|||||+++++-. .+ -..+| |+|....
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~--la~~g~~vpa~~~----------------- 68 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL--MAQIGCFVPCDSA----------------- 68 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH--HHHhCCCcCcccE-----------------
Confidence 34688999999999999999999999999999999721 00 00111 1111100
Q ss_pred CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCC---CCCCCHHHHHHHH-HHHhh-
Q 026376 120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHLDLDAVEALI-QGLVL- 192 (239)
Q Consensus 120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral--~~~p~llllDEP---t~~LD~~~~~~l~-~~l~~- 192 (239)
.-..+.+++..+++.+. ....+|.|+++++.+++++ +.+|+++||||| |+++|+.+..+.+ +.+.+
T Consensus 69 ---~~~~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~ 141 (222)
T cd03285 69 ---DIPIVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQ 141 (222)
T ss_pred ---EEeccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhc
Confidence 00112345566776532 2578999999999999999 899999999999 9999998876543 66654
Q ss_pred cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 193 FQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 193 ~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
.+.++|++||+ ..+.++||++..+++|++.
T Consensus 142 ~~~~vlisTH~-~el~~~~~~~~~i~~g~~~ 171 (222)
T cd03285 142 IKCFCLFATHF-HELTALADEVPNVKNLHVT 171 (222)
T ss_pred CCCeEEEEech-HHHHHHhhcCCCeEEEEEE
Confidence 36799999996 5667799999999999875
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.88 E-value=2e-21 Score=197.48 Aligned_cols=108 Identities=27% Similarity=0.301 Sum_probs=92.6
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEE
Q 026376 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILM 199 (239)
Q Consensus 126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l---~~~~~tii~ 199 (239)
+..+.|..+||......++..+|||||.||+-||.-|..+ +.+++|||||.||++.....+++.| .+.+.|||+
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3455678889976667899999999999999999999865 7999999999999999998887774 456789999
Q ss_pred EecCHHHHhhhcCeEEEEe------CCeEEeeCCChhHHHHH
Q 026376 200 VSHDEHLISGSVEELWVVS------EGKATPFHGTFHDYKKM 235 (239)
Q Consensus 200 vsHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~~ 235 (239)
|+||++++.. ||+++-|. .|+|+ +.|+|+++.+.
T Consensus 1758 ieH~~~~i~~-aD~iidlgp~gG~~GG~iv-a~Gtp~~i~~~ 1797 (1809)
T PRK00635 1758 IDHDPALLKQ-ADYLIEMGPGSGKTGGKIL-FSGPPKDISAS 1797 (1809)
T ss_pred EeCCHHHHHh-CCEEEEcCCCcccCCCEEE-EEeCHHHHhhC
Confidence 9999999986 99999994 46776 78999998653
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.88 E-value=7.2e-23 Score=168.78 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=97.2
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-CCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcH
Q 026376 46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE 124 (239)
Q Consensus 46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (239)
-..++++.+|++++|+|||||||||||++|++.. .+..|.........++++.|.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi------------------------ 75 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRI------------------------ 75 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEE------------------------
Confidence 3456777799999999999999999999999543 233333221111112221111
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCEEEEE
Q 026376 125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQGGILMV 200 (239)
Q Consensus 125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~~~tii~v 200 (239)
+..++..+. .....+.+|.+++| +..+.+++.+|+++|+||||+|+|+.....+ ++.+.+.+.++|++
T Consensus 76 ------~~~~~~~d~-i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~ 147 (202)
T cd03243 76 ------FTRIGAEDS-ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA 147 (202)
T ss_pred ------EEEecCccc-ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 111122111 12344667777765 6666778899999999999999999866544 34445556799999
Q ss_pred ecCHHHHhhhcCeEEEEeCCeEE
Q 026376 201 SHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 201 sHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
||+.+++. .|+++..++.+++.
T Consensus 148 tH~~~~~~-~~~~~~~l~~~~~~ 169 (202)
T cd03243 148 THFHELAD-LPEQVPGVKNLHME 169 (202)
T ss_pred CChHHHHH-HhhcCCCeEEEEEE
Confidence 99998876 67788888888875
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.9e-21 Score=182.22 Aligned_cols=105 Identities=27% Similarity=0.362 Sum_probs=89.5
Q ss_pred HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEe
Q 026376 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVS 201 (239)
Q Consensus 128 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vs 201 (239)
.+.|..+||..-...++..+|||||.|||-||.-|.... .++||||||.||-...+..|++.|.+ .|.|||+|.
T Consensus 803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE 882 (935)
T COG0178 803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882 (935)
T ss_pred HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 445667888766678899999999999999999999876 99999999999999988887776654 577999999
Q ss_pred cCHHHHhhhcCeEEEEe------CCeEEeeCCChhHHHH
Q 026376 202 HDEHLISGSVEELWVVS------EGKATPFHGTFHDYKK 234 (239)
Q Consensus 202 Hd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~ 234 (239)
|+++.+. .||+|+-|- .|+|+ +.|+|+++.+
T Consensus 883 HNLdVIk-~AD~IIDLGPeGG~~GG~iv-a~GTPeeva~ 919 (935)
T COG0178 883 HNLDVIK-TADWIIDLGPEGGDGGGEIV-ASGTPEEVAK 919 (935)
T ss_pred cccceEe-ecCEEEEcCCCCCCCCceEE-EecCHHHHHh
Confidence 9999986 699999983 46676 7899999865
No 409
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.87 E-value=1.2e-21 Score=172.66 Aligned_cols=181 Identities=23% Similarity=0.289 Sum_probs=135.8
Q ss_pred EEcCCCCceeeeeeEEEeCCC-----EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCc
Q 026376 36 FGYPGGPILFKNLNFGIDLDS-----RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN 110 (239)
Q Consensus 36 ~~y~~~~~~l~~isl~i~~Ge-----~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~ 110 (239)
++|++-+..+.+..|.|+.|+ ++..+|.||.|||||+++++|.++|++|.=. ....++|-+|........+..
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~--p~lnVSykpqkispK~~~tvR 420 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI--PVLNVSYKPQKISPKREGTVR 420 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc--cccceeccccccCccccchHH
Confidence 557665667789999999884 7899999999999999999999999986311 234688888876443322221
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----
Q 026376 111 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL---- 186 (239)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l---- 186 (239)
.+..-.-.......+-+.++++-+.++ ...++.+.+|||||+|||++|.+|-..+++++.|||.+.||.+.+...
T Consensus 421 ~ll~~kIr~ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askvi 499 (592)
T KOG0063|consen 421 QLLHTKIRDAYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVI 499 (592)
T ss_pred HHHHHHhHhhhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHH
Confidence 111111111112345566677777775 466788999999999999999999999999999999999999876543
Q ss_pred HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 187 ~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
.+.+-..++|-.+|.||.-.+..++||+++.+.
T Consensus 500 kRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 500 KRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 334445577999999999988889999998864
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.84 E-value=9e-21 Score=156.48 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=99.4
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEE-eeccCCCCCCCCcHHHHHHHhC
Q 026376 41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVF-SQHHVDGLDLSSNPLLYMMRCF 119 (239)
Q Consensus 41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~-~q~~~~~~~~~~~~~~~~~~~~ 119 (239)
+..+.+|++|++..|++++|+||||+||||++++|+++.-- ..+|+. |-.. ....
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l----------a~~G~~vpa~~-----~~l~--------- 70 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM----------AQIGCFVPAEY-----ATLP--------- 70 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH----------HHcCCCcchhh-----cCcc---------
Confidence 35689999999999999999999999999999999887410 011111 1000 0000
Q ss_pred CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH----HHHHHHHhhcCC
Q 026376 120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV----EALIQGLVLFQG 195 (239)
Q Consensus 120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~----~~l~~~l~~~~~ 195 (239)
..+.++..++..+. ..+..+++|+|++|+ ..+.+++.+|+++|+|||++|+|+... ..+++.+.+.+.
T Consensus 71 ------~~d~I~~~~~~~d~-~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~ 142 (204)
T cd03282 71 ------IFNRLLSRLSNDDS-MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKES 142 (204)
T ss_pred ------ChhheeEecCCccc-cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 11223444555432 346678999999976 455667899999999999999999653 345666666678
Q ss_pred EEEEEecCHHHHhhhcC
Q 026376 196 GILMVSHDEHLISGSVE 212 (239)
Q Consensus 196 tii~vsHd~~~~~~~~d 212 (239)
++|++||+.+++...++
T Consensus 143 ~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 143 TVFFATHFRDIAAILGN 159 (204)
T ss_pred EEEEECChHHHHHHhhc
Confidence 99999999999886653
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.84 E-value=7.6e-21 Score=156.42 Aligned_cols=134 Identities=18% Similarity=0.101 Sum_probs=79.1
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 120 (239)
+.+++|++|+. |++++|+||||||||||+|+|+|.... ..|.-. .. ..+++|. . .+....+..+.+.....
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v-~a---~~~~~q~-~-~l~~~~~~~d~l~~~~s 85 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV-CA---SSFELPP-V-KIFTSIRVSDDLRDGIS 85 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE-ec---CccCccc-c-eEEEeccchhccccccC
Confidence 35778776665 799999999999999999999986531 122211 00 1233331 1 11111111111100000
Q ss_pred --CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcC
Q 026376 121 --GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQ 194 (239)
Q Consensus 121 --~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~~ 194 (239)
.....++.++++.++. .+|+++|+||||+++|+.....+ ++.+.+.+
T Consensus 86 ~~~~e~~~~~~iL~~~~~---------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~ 138 (199)
T cd03283 86 YFYAELRRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKN 138 (199)
T ss_pred hHHHHHHHHHHHHHhccC---------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCC
Confidence 0011223333333321 59999999999999999876543 44455556
Q ss_pred CEEEEEecCHHHHhhh
Q 026376 195 GGILMVSHDEHLISGS 210 (239)
Q Consensus 195 ~tii~vsHd~~~~~~~ 210 (239)
.++|++||+++++..+
T Consensus 139 ~tiiivTH~~~~~~~~ 154 (199)
T cd03283 139 TIGIISTHDLELADLL 154 (199)
T ss_pred CEEEEEcCcHHHHHhh
Confidence 7999999999998765
No 412
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=3e-20 Score=181.86 Aligned_cols=194 Identities=23% Similarity=0.321 Sum_probs=147.1
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC---CceeEEecCc--------eEEEEEeeccCCC--CCCC
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAK--------VRIAVFSQHHVDG--LDLS 108 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~~--------~~~~~~~q~~~~~--~~~~ 108 (239)
..+++|+|.-+++|+.+.++||.||||||||++++|-+.- ..|+|.+++. ..++|..|+.... +++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3589999999999999999999999999999999997653 2468888763 3588998875322 2222
Q ss_pred CcHHHHHHHhC------CCCcHH-----HHHHHHHhcCCCccc----ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 109 SNPLLYMMRCF------PGVPEQ-----KLRAHLGSFGVTGNL----ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 109 ~~~~~~~~~~~------~~~~~~-----~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
++ +++..+.. ....+. ..+.+++.+|++.-. -+.-.+..|||||+||.+|-+++.+++++.+||
T Consensus 208 eT-ldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 208 ET-LDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eh-hhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 22 33333211 112222 234688999996422 123456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 237 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 237 (239)
+|.|||..+.-++++.+++. +.|++++-|.. ..+-.+.|+|++|.+|+++ |.|+.++...-.+
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i-y~Gp~d~~~~yFe 354 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI-YQGPRDEVLPYFE 354 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE-EeccHHHHHHHHH
Confidence 99999999999988887754 45777777765 4566789999999999997 8899988766544
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=2.8e-20 Score=181.74 Aligned_cols=103 Identities=26% Similarity=0.306 Sum_probs=89.6
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 026376 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDE 204 (239)
Q Consensus 130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~ 204 (239)
+|+.+|+.....++++.+|||||+|||+||++|+.+| ++|||||||+|||+..+..+++.|++ .+.|||+||||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5777888643268999999999999999999999997 99999999999999999888777654 467999999999
Q ss_pred HHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376 205 HLISGSVEELWVV------SEGKATPFHGTFHDYKK 234 (239)
Q Consensus 205 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 234 (239)
+++. .||++++| ++|+++ +.|+++++..
T Consensus 552 ~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~~~ 585 (943)
T PRK00349 552 DTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEIMK 585 (943)
T ss_pred HHHH-hCCEEEEeccccCCCCCEEe-eccCHHHHhc
Confidence 9986 69999999 889996 7899988743
No 414
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=4.1e-20 Score=180.34 Aligned_cols=102 Identities=26% Similarity=0.291 Sum_probs=88.3
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 026376 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDE 204 (239)
Q Consensus 130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~ 204 (239)
.+..+|+.....++++.+|||||+|||+||++|+.+| ++|||||||+|||+.....+++.|++ .+.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4667788542257899999999999999999999986 89999999999999999888777654 467999999999
Q ss_pred HHHhhhcCeEEEE------eCCeEEeeCCChhHHH
Q 026376 205 HLISGSVEELWVV------SEGKATPFHGTFHDYK 233 (239)
Q Consensus 205 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 233 (239)
+++. .||++++| ++|+++ +.|+++++.
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el~ 582 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEIL 582 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEe-eccCHHHHh
Confidence 9986 89999999 899986 789988874
No 415
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.4e-19 Score=155.66 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=67.7
Q ss_pred CCCCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhc---C
Q 026376 145 MYTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV---E 212 (239)
Q Consensus 145 ~~~LSgGqkqrv~laral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~---d 212 (239)
...+|+||||+++||++|+ .+|+++|+||||++||+..+..+.+.+.+.+ .+++++|+...+..+| +
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~ 259 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRA 259 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCc
Confidence 4568999999999999985 7999999999999999999999999998765 5777777777777777 7
Q ss_pred eEEEEeCCeE
Q 026376 213 ELWVVSEGKA 222 (239)
Q Consensus 213 ~i~~l~~G~i 222 (239)
+++.+++|++
T Consensus 260 ~i~~l~~g~i 269 (270)
T cd03242 260 QIFRVDAGTL 269 (270)
T ss_pred cEEEEeCcEE
Confidence 8999999986
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.81 E-value=1e-19 Score=151.61 Aligned_cols=142 Identities=23% Similarity=0.262 Sum_probs=92.8
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 120 (239)
..+.++++|+..+ ++++|+||||||||||||+|++..-. ..|.........++++.|-.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~------------------- 77 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF------------------- 77 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe-------------------
Confidence 4578999999987 99999999999999999999875321 12221111112223322210
Q ss_pred CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH----HHHHHHHh--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHH
Q 026376 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS----RVAFAKIT--FKKPHIILLDEP---SNHLDLDAV-EALIQGL 190 (239)
Q Consensus 121 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq----rv~laral--~~~p~llllDEP---t~~LD~~~~-~~l~~~l 190 (239)
..++. ..++|.|+.+ +..+++++ +.+|+++||||| |+++|.... ..+++.+
T Consensus 78 -----------~~~~~--------~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l 138 (216)
T cd03284 78 -----------TRIGA--------SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYL 138 (216)
T ss_pred -----------ccCCc--------hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Confidence 00000 1233444333 33455554 579999999999 999998764 5677777
Q ss_pred hhc-CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 191 VLF-QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 191 ~~~-~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
.+. +.++|++||+.++ ..++|++..+++|++.
T Consensus 139 ~~~~~~~vi~~TH~~~l-~~l~~~~~~v~~~~~~ 171 (216)
T cd03284 139 HEKIGAKTLFATHYHEL-TELEGKLPRVKNFHVA 171 (216)
T ss_pred HhccCCcEEEEeCcHHH-HHHhhcCCCeEEEEEE
Confidence 776 7799999999755 4578877666666654
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.78 E-value=3.2e-19 Score=145.16 Aligned_cols=124 Identities=21% Similarity=0.239 Sum_probs=80.0
Q ss_pred EEEEECCCCCcHHHHHHHHh-cCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIA-GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 135 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~-Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (239)
+++|+||||+|||||+|.++ ..+.+..|.........++++. +++..++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d------------------------------~il~~~~ 50 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFD------------------------------RIFTRIG 50 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccc------------------------------eEEEEeC
Confidence 36899999999999999998 3333344432211111111111 1233344
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhc-CCEEEEEecCHHHHhhh
Q 026376 136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLF-QGGILMVSHDEHLISGS 210 (239)
Q Consensus 136 l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~-~~tii~vsHd~~~~~~~ 210 (239)
..+ ...+..+++|+|++|...+++ .+.+|+++|+|||++|+|+.....+ ++.+.+. +.++|++||+.+. .++
T Consensus 51 ~~d-~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l-~~~ 127 (185)
T smart00534 51 ASD-SLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL-TKL 127 (185)
T ss_pred CCC-chhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH-HHH
Confidence 433 234567899998887444443 2459999999999999999865544 3444443 6689999999964 457
Q ss_pred cCe
Q 026376 211 VEE 213 (239)
Q Consensus 211 ~d~ 213 (239)
|++
T Consensus 128 ~~~ 130 (185)
T smart00534 128 ADE 130 (185)
T ss_pred hhc
Confidence 764
No 418
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=6.5e-18 Score=140.41 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=91.4
Q ss_pred eeeeeeEEEeCC--CEEEEECCCCCcHHHHHHHHhc--CcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhC
Q 026376 44 LFKNLNFGIDLD--SRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF 119 (239)
Q Consensus 44 ~l~~isl~i~~G--e~~~iiG~NGsGKSTLl~~l~G--l~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 119 (239)
+-+|++ +..+ .+++|+||||+|||||||.|+. ++ +..|.........++|+.|... .+....+
T Consensus 18 vpnd~~--l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~-~l~~~~s--------- 84 (213)
T cd03281 18 VPNDTE--IGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFT-RMSSRES--------- 84 (213)
T ss_pred EcceEE--ecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeee-eeCCccC---------
Confidence 334444 4444 7899999999999999999984 34 5677776666667787777532 1110000
Q ss_pred CCCcHHHHHHHHHhcCCCcccccCCCCCCC--hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH----HHHHHHhhc
Q 026376 120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLS--GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE----ALIQGLVLF 193 (239)
Q Consensus 120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gGqkqrv~laral~~~p~llllDEPt~~LD~~~~~----~l~~~l~~~ 193 (239)
+ ...+| .-+.||+++|++++.+|+++|+|||++|+|+.... .+++.+.+.
T Consensus 85 -------i-----------------~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~ 140 (213)
T cd03281 85 -------V-----------------SSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR 140 (213)
T ss_pred -------h-----------------hhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 0 01112 45779999999999999999999999999986432 344555443
Q ss_pred C---CEEEEEecCHHHHhhhc
Q 026376 194 Q---GGILMVSHDEHLISGSV 211 (239)
Q Consensus 194 ~---~tii~vsHd~~~~~~~~ 211 (239)
+ .++|++||+.+.+....
T Consensus 141 ~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 141 GPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCcEEEEEcChHHHHHhhh
Confidence 2 37999999999987653
No 419
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.74 E-value=1.7e-17 Score=138.20 Aligned_cols=163 Identities=25% Similarity=0.301 Sum_probs=96.2
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCc--CCCce-------eEEecC------ceEEEEEeeccCCCCCCCC
Q 026376 46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GEL--QPSSG-------TVFRSA------KVRIAVFSQHHVDGLDLSS 109 (239)
Q Consensus 46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~-Gl~--~p~~G-------~i~~~~------~~~~~~~~q~~~~~~~~~~ 109 (239)
++..+.+.+ .+++|+|||||||||++.+|. .+- ...+. -|.... ...+...+++.........
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 456677765 599999999999999999993 222 11111 111100 1223333332211100000
Q ss_pred cH--HH-HHH-----H---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCC
Q 026376 110 NP--LL-YMM-----R---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEP 174 (239)
Q Consensus 110 ~~--~~-~~~-----~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~----~~p~llllDEP 174 (239)
.. +. ... . .........+.+.+....+.. ..||||||.+++||-.|+ ..+++++||||
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEv 167 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEV 167 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEEST
T ss_pred cccccccccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccccc
Confidence 00 00 000 0 000122455666676666542 299999999999997663 57899999999
Q ss_pred CCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCeEEEE
Q 026376 175 SNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~i~~l 217 (239)
.++||...+..+.+.|++.. .-+|++||+..+.. .||+.+.+
T Consensus 168 d~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~v 211 (220)
T PF02463_consen 168 DAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIGV 211 (220)
T ss_dssp TTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 99999999999999998775 57999999998876 57887765
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.73 E-value=6.1e-18 Score=163.28 Aligned_cols=148 Identities=24% Similarity=0.310 Sum_probs=98.1
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCC-CEEEEECCCCCcHHHHHHHHhcC-cCCCcee-EEecCceEEEEEeeccCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLIAGE-LQPSSGT-VFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~G-e~~~iiG~NGsGKSTLl~~l~Gl-~~p~~G~-i~~~~~~~~~~~~q~~~~~ 104 (239)
.+.++++..-+-... -.-.+|+++..+ ++++|+||||+|||||||+|+|. +.+..|- |.......++|+.|.
T Consensus 295 ~i~l~~~rhPll~~~-~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i---- 369 (771)
T TIGR01069 295 KIILENARHPLLKEP-KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI---- 369 (771)
T ss_pred CEEEccccCceecCC-ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe----
Confidence 567766543221110 122478999887 89999999999999999999998 5555552 211111111211111
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376 105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 184 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~ 184 (239)
+ ..++.... .....+++|+|+++++.|++++ .+|+++|+|||++|+|+....
T Consensus 370 --------------~------------~~i~~~~s-i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 370 --------------F------------ADIGDEQS-IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------------e------------eecChHhH-HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 01111111 1234678999999999998876 789999999999999998766
Q ss_pred HH----HHHHhhcCCEEEEEecCHHHHh
Q 026376 185 AL----IQGLVLFQGGILMVSHDEHLIS 208 (239)
Q Consensus 185 ~l----~~~l~~~~~tii~vsHd~~~~~ 208 (239)
.+ ++.+.+.+.++|++||+.++..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 55 4455555778999999988643
No 421
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.72 E-value=2e-16 Score=135.57 Aligned_cols=143 Identities=24% Similarity=0.340 Sum_probs=87.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 135 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (239)
.-++|+||||||||||+++|+|+++|++|+|.+++.. +..+ .....+........+.. ++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~-v~~~------------d~~~ei~~~~~~~~q~~-------~~ 171 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKK-VGIV------------DERSEIAGCVNGVPQHD-------VG 171 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEE-eecc------------hhHHHHHHHhccccccc-------cc
Confidence 5689999999999999999999999999999887643 1110 00001111110111100 00
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH--H------
Q 026376 136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL--I------ 207 (239)
Q Consensus 136 l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~--~------ 207 (239)
....-|.+=.|.....+.+.+.+|+++|+|||++. +....+++.+. .+.++|++||+... +
T Consensus 172 -------~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~ 240 (270)
T TIGR02858 172 -------IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDVEDLYKRPVF 240 (270)
T ss_pred -------ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHHHHHHhChHH
Confidence 11111222222222344444479999999999853 33445555554 47799999998765 4
Q ss_pred -----hhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 208 -----SGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 208 -----~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
..+++|+++|++|+ ..|+++++
T Consensus 241 ~~l~~~~~~~r~i~L~~~~---~~g~~~~i 267 (270)
T TIGR02858 241 KELIENEAFERYVVLSRRK---GPGTVEAV 267 (270)
T ss_pred HHHHhcCceEEEEEEecCC---CCCceeec
Confidence 25689999999876 35665544
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.69 E-value=2.5e-16 Score=131.52 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=91.8
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G-l~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 120 (239)
..+.+|++|.+.+|++++|+||||+||||+++++++ .+.+..|...+.....++++.|-...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~----------------- 80 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR----------------- 80 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE-----------------
Confidence 467899999999999999999999999999999999 77888898776655556655443210
Q ss_pred CCcHHHHHHHHHhcCCCcccccCCCCCCC--hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH---H-HHHHHHHHhhc-
Q 026376 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLS--GGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---A-VEALIQGLVLF- 193 (239)
Q Consensus 121 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gGqkqrv~laral~~~p~llllDEPt~~LD~~---~-~~~l~~~l~~~- 193 (239)
++-.+.. ...+| ..|-++++-+..-+.+++++|+|||.+|.|+. + ...+++.+.+.
T Consensus 81 -------------~~~~d~~----~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~ 143 (222)
T cd03287 81 -------------MGASDSI----QHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEK 143 (222)
T ss_pred -------------ecCcccc----ccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhcc
Confidence 0000000 01122 13334443333445689999999997777644 3 23466777766
Q ss_pred CCEEEEEecCHHHHh
Q 026376 194 QGGILMVSHDEHLIS 208 (239)
Q Consensus 194 ~~tii~vsHd~~~~~ 208 (239)
+.++|++||+.+...
T Consensus 144 ~~~~i~~TH~~~l~~ 158 (222)
T cd03287 144 KCLVLFVTHYPSLGE 158 (222)
T ss_pred CCeEEEEcccHHHHH
Confidence 669999999998765
No 423
>PRK13695 putative NTPase; Provisional
Probab=99.68 E-value=3.5e-17 Score=131.70 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=100.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 136 (239)
.++|+|+||||||||++.|++.+.+ .|. . ..+|+.|+.... .....+. +...... ....+...+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-~-----~~g~~~~~~~~~--~~~~~~~-~~~~~~~-----~~~~l~~~~~ 66 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-K-----VGGFYTEEVREG--GKRIGFK-IIDLDTG-----EEGILARVGF 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCC-e-----EEEEEcHHHHhc--CCccceE-EEEcCCC-----CeEEccccCC
Confidence 5789999999999999999887655 442 1 245555542110 0000000 0000000 0112233332
Q ss_pred -CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCe
Q 026376 137 -TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE--PSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 213 (239)
Q Consensus 137 -~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE--Pt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~ 213 (239)
......+....+||+++-+..+++..+.+|+++++|| |+.++|....+.+.+.+ +.+.++|+|+|+. .+..++|+
T Consensus 67 ~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~ 144 (174)
T PRK13695 67 PSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQE 144 (174)
T ss_pred CCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHH
Confidence 2222234456799999999999999999999999999 77788876666666666 6678999999995 55568999
Q ss_pred EEEEeCCeEEee
Q 026376 214 LWVVSEGKATPF 225 (239)
Q Consensus 214 i~~l~~G~i~~~ 225 (239)
+..+.+|++...
T Consensus 145 i~~~~~~~i~~~ 156 (174)
T PRK13695 145 IKSRPGGRVYEL 156 (174)
T ss_pred HhccCCcEEEEE
Confidence 999999998643
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.65 E-value=2.2e-16 Score=139.61 Aligned_cols=165 Identities=24% Similarity=0.328 Sum_probs=113.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC--ceEEEEE--------eeccC-CCCC--CCCcHHHHHHHhC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA--KVRIAVF--------SQHHV-DGLD--LSSNPLLYMMRCF 119 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~~~~~~--------~q~~~-~~~~--~~~~~~~~~~~~~ 119 (239)
.+|++.+++|-||.||||-+++++|-++|.-|...... ...++|+ ++... ..+. ...-..+.+.+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 57999999999999999999999999999877642110 1111221 11110 0000 0000011111100
Q ss_pred ---------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376 120 ---------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190 (239)
Q Consensus 120 ---------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 190 (239)
...++....++++.+.+. ...++.+.+|||||-||.+||.+.++++++.++|||.+.||...+......+
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I 256 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI 256 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence 001122345566666665 3567888999999999999999999999999999999999999876655555
Q ss_pred hhc---CCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 191 VLF---QGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 191 ~~~---~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
+++ ..-||+|.||+..+..+.|-+.++-
T Consensus 257 Rsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 257 RSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred HHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 443 4569999999999999999998885
No 425
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.61 E-value=1.3e-15 Score=147.58 Aligned_cols=140 Identities=20% Similarity=0.225 Sum_probs=91.9
Q ss_pred eeeEEEeC-CCEEEEECCCCCcHHHHHHHHhcCc-CCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcH
Q 026376 47 NLNFGIDL-DSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE 124 (239)
Q Consensus 47 ~isl~i~~-Ge~~~iiG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (239)
..++.+.. +.++.|+|||++||||+||.++... -+..|- ++|-.....+ ..+
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~----------~vpa~~~~~i----~~~------------ 371 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL----------PIPANEPSEI----PVF------------ 371 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC----------CcccCCCccc----ccc------------
Confidence 44555554 4679999999999999999996431 111121 1111100000 000
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCEEEEE
Q 026376 125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQGGILMV 200 (239)
Q Consensus 125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~~~tii~v 200 (239)
..++..+|-... ..+..+++|+||+|++.|++++ .+|+++|+|||++|+|+.....+ ++.+.+.+.++|++
T Consensus 372 ---~~i~~~ig~~~s-i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit 446 (782)
T PRK00409 372 ---KEIFADIGDEQS-IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT 446 (782)
T ss_pred ---ceEEEecCCccc-hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 011112333222 2356789999999999999988 89999999999999999865544 44555567799999
Q ss_pred ecCHHHHhhhcCeEEEE
Q 026376 201 SHDEHLISGSVEELWVV 217 (239)
Q Consensus 201 sHd~~~~~~~~d~i~~l 217 (239)
||+.+.....+++..+.
T Consensus 447 TH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 447 THYKELKALMYNREGVE 463 (782)
T ss_pred CChHHHHHHHhcCCCeE
Confidence 99999888777665443
No 426
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.58 E-value=2e-14 Score=121.99 Aligned_cols=160 Identities=15% Similarity=0.147 Sum_probs=102.7
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC--------------CCCCCcHHHHH
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG--------------LDLSSNPLLYM 115 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~--------------~~~~~~~~~~~ 115 (239)
+.+.+|++++|+||+|+|||||++.|++......+.+. .+.++.++.... -..........
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~-----~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY-----LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE-----EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHH
Confidence 58899999999999999999999999998876533222 112212221000 00000111100
Q ss_pred H---------Hh--CCCC-------cHHHHHHHHHhcCCCcccccCCCCCCChHH--------HHHHHHHHHhccCCCEE
Q 026376 116 M---------RC--FPGV-------PEQKLRAHLGSFGVTGNLALQPMYTLSGGQ--------KSRVAFAKITFKKPHII 169 (239)
Q Consensus 116 ~---------~~--~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--------kqrv~laral~~~p~ll 169 (239)
. .. ..+. +-.+.....+.+.. .....+|||+ +||+++||++..+++|.
T Consensus 86 ~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~------~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 86 QVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVP------PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccc------cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 0 00 0000 01122222222221 1234579999 99999999999999999
Q ss_pred EEeCCCCCCCHHHH-H-HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 170 LLDEPSNHLDLDAV-E-ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 170 llDEPt~~LD~~~~-~-~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
+| ||+.+|..+. . -+.+.++....|.|++||++.... .++.|.+|+.|++.
T Consensus 160 ~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr~ 212 (249)
T cd01128 160 II--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTRK 212 (249)
T ss_pred Ee--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCcc
Confidence 99 9999996432 2 345666656679999999999876 68999999999975
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.56 E-value=1e-14 Score=137.40 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=66.5
Q ss_pred CCCChHHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 146 YTLSGGQKSRVAFAKITFKK----PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 146 ~~LSgGqkqrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
..|||||+||++||++++.. |++|||||||+|||+.....+.+.+++. +.+||+|||++..+. +||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 46899999999999999985 6999999999999999998888877654 569999999999886 8999999987
Q ss_pred Ce
Q 026376 220 GK 221 (239)
Q Consensus 220 G~ 221 (239)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 53
No 428
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=9.7e-15 Score=146.23 Aligned_cols=80 Identities=21% Similarity=0.181 Sum_probs=71.5
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHH
Q 026376 141 ALQPMYTLSGGQKSRVAFAKITFK----------KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLI 207 (239)
Q Consensus 141 ~~~~~~~LSgGqkqrv~laral~~----------~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~ 207 (239)
..+++.+|||||++||+||+||+. +|++||+||||++||+.+...+++.|.. .+.+|+||||++++.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 456889999999999999999985 7999999999999999998888776654 466899999999999
Q ss_pred hhhcCeEEEEeCC
Q 026376 208 SGSVEELWVVSEG 220 (239)
Q Consensus 208 ~~~~d~i~~l~~G 220 (239)
..+||+|++++.+
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 9999999999754
No 429
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.55 E-value=1.3e-14 Score=136.56 Aligned_cols=79 Identities=22% Similarity=0.358 Sum_probs=68.5
Q ss_pred CCCCCCChHHHHHHHHHHHhc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHHhhh
Q 026376 143 QPMYTLSGGQKSRVAFAKITF----------KKPHIILLDEPS-NHLDLDAVEALIQGLVLF-QGGILMVSHDEHLISGS 210 (239)
Q Consensus 143 ~~~~~LSgGqkqrv~laral~----------~~p~llllDEPt-~~LD~~~~~~l~~~l~~~-~~tii~vsHd~~~~~~~ 210 (239)
.++.+|||||+||++||+||+ .+|++||||||| ++||+.+...+.+.|.+. +.+||+|||+.+... .
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~-~ 542 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQ-K 542 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchh-h
Confidence 356899999999999999987 599999999998 789999999999988875 458999999977664 6
Q ss_pred cCeEEEEeC-CeE
Q 026376 211 VEELWVVSE-GKA 222 (239)
Q Consensus 211 ~d~i~~l~~-G~i 222 (239)
||++++|.+ |+.
T Consensus 543 ~d~~~~l~~~~~~ 555 (562)
T PHA02562 543 FDRHLKMEKVGRF 555 (562)
T ss_pred hhcEEEEEEECCe
Confidence 899999986 554
No 430
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=5e-14 Score=117.34 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhC
Q 026376 41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF 119 (239)
Q Consensus 41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 119 (239)
...+-+|++|+.++|++++|+||||+||||+++++++..-.. .|-........++++.+
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~-------------------- 75 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDR-------------------- 75 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccE--------------------
Confidence 346789999999999999999999999999999998763221 12100000001111100
Q ss_pred CCCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhc
Q 026376 120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLF 193 (239)
Q Consensus 120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~ 193 (239)
++..++-.+.. ...+|. .|.++++-....+.+|+++|+|||++|+|+.....+ ++.+.+.
T Consensus 76 ----------i~~~~~~~d~~----~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~ 141 (218)
T cd03286 76 ----------IFTRIGARDDI----MKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKK 141 (218)
T ss_pred ----------EEEecCccccc----ccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHh
Confidence 01111111111 112222 344555444444578999999999999998764433 4555554
Q ss_pred -CCEEEEEecCHHHHhhhc
Q 026376 194 -QGGILMVSHDEHLISGSV 211 (239)
Q Consensus 194 -~~tii~vsHd~~~~~~~~ 211 (239)
+.++|++||+.+++..++
T Consensus 142 ~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 142 VKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred cCCcEEEEeccHHHHHHhh
Confidence 678999999999988765
No 431
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.52 E-value=5.1e-14 Score=118.36 Aligned_cols=157 Identities=22% Similarity=0.210 Sum_probs=90.2
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHH-HHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTI-LKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 107 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTL-l~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 107 (239)
+.++++.+.++++ +++|+++.|+|+|||||||| ++++++..++... ..|+..+. +.
T Consensus 8 ~~~~~ld~~l~gg----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~---------~~yi~~e~----~~ 64 (230)
T PRK08533 8 LSRDELHKRLGGG----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS---------VSYVSTQL----TT 64 (230)
T ss_pred EEEeeeehhhCCC----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc---------EEEEeCCC----CH
Confidence 4566666666432 68899999999999999999 7999988765322 23332111 00
Q ss_pred CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCC----C
Q 026376 108 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHL----D 179 (239)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~----~p~llllDEPt~~L----D 179 (239)
......+.. . +.+. .+.... +.-.. ..-. ..+|+++.++-.+++.+.. +|+++++||||+++ |
T Consensus 65 -~~~~~~~~~-~-g~~~---~~~~~~-~~l~~-~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d 135 (230)
T PRK08533 65 -TEFIKQMMS-L-GYDI---NKKLIS-GKLLY-IPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS 135 (230)
T ss_pred -HHHHHHHHH-h-CCch---HHHhhc-CcEEE-EEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc
Confidence 111122211 1 1111 111111 10000 1111 2467776666565554443 69999999999999 7
Q ss_pred HHHHHHHHHHHh---hcCCEEEEEecCHHH--------HhhhcCeEEEEe
Q 026376 180 LDAVEALIQGLV---LFQGGILMVSHDEHL--------ISGSVEELWVVS 218 (239)
Q Consensus 180 ~~~~~~l~~~l~---~~~~tii~vsHd~~~--------~~~~~d~i~~l~ 218 (239)
+.....+.+.++ +.+.|+ ++||+... +..+||-++.|+
T Consensus 136 ~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 136 EVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 776666666655 334554 55666543 345678888776
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.52 E-value=5.4e-14 Score=131.88 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376 147 TLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEG 220 (239)
Q Consensus 147 ~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G 220 (239)
.|||||+||++||++++. +|+++|||||++|||..+...+.+.+++. +.+||+|||++..+ .+||+.+.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 489999999999999996 58999999999999999999888888765 45899999999877 589999999764
No 433
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.51 E-value=1.6e-13 Score=124.20 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=109.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 107 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 107 (239)
.++-+.++..|..+..+++.+ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.|...+ |..
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iG--------erg------ 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVG--------ERG------ 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCC--------CCc------
Confidence 467778888886555688875 99999999999999999999999999999999888654222 211
Q ss_pred CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc-------cCCCEEEEeCCCCCCCH
Q 026376 108 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-------KKPHIILLDEPSNHLDL 180 (239)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~-------~~p~llllDEPt~~LD~ 180 (239)
.+...++ +..+..-++.....-....+.|.|+|+|++.+.+.+ .++-++++|+||++.|+
T Consensus 195 -~ev~e~~------------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A 261 (432)
T PRK06793 195 -REVKDFI------------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA 261 (432)
T ss_pred -ccHHHHH------------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH
Confidence 1111111 111111122211111345788999999999998887 78999999999999999
Q ss_pred HHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 181 DAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 181 ~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
. .++-..+.+ .+.+..+.||-..++++.+ ..+.|.+.
T Consensus 262 ~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag----~~~~GSiT 301 (432)
T PRK06793 262 R--RSVDIAVKELPIGGKTLLMESYMKKLLERSG----KTQKGSIT 301 (432)
T ss_pred H--HHHHHHhcCCCCCCeeeeeeccchhHHHHhc----cCCCcceE
Confidence 6 333333322 2457777788555555533 34677764
No 434
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.50 E-value=4.6e-13 Score=121.85 Aligned_cols=161 Identities=14% Similarity=0.231 Sum_probs=95.7
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-------------------EEEEEeecc
Q 026376 41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------------RIAVFSQHH 101 (239)
Q Consensus 41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------------~~~~~~q~~ 101 (239)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|...+.. .+.++.+.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~- 222 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS- 222 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC-
Confidence 34588999 9999999999999999999999999999999999987643211 01111110
Q ss_pred CCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCCh-HHHHH-HHHHHHhccCCCEEEEeCC--CCC
Q 026376 102 VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG-GQKSR-VAFAKITFKKPHIILLDEP--SNH 177 (239)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-Gqkqr-v~laral~~~p~llllDEP--t~~ 177 (239)
...+...+...+ ..-.+.+++..-|-+- + --..+|+- -|-+| +++ .+.|| |+|
T Consensus 223 ------~~~~~~r~~~~~---~a~~iAEyfr~~g~~V-l--l~~Dsltr~A~A~rEisl-----------~~ge~P~~~G 279 (438)
T PRK07721 223 ------DQPALMRIKGAY---TATAIAEYFRDQGLNV-M--LMMDSVTRVAMAQREIGL-----------AVGEPPTTKG 279 (438)
T ss_pred ------CCCHHHHHHHHH---HHHHHHHHHHHCCCcE-E--EEEeChHHHHHHHHHHHH-----------hcCCCCcccc
Confidence 000111110000 0011222222222210 0 01122221 11111 111 12364 789
Q ss_pred CCHHHHHHHHHHHhhc-----CC-----EEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376 178 LDLDAVEALIQGLVLF-----QG-----GILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 229 (239)
Q Consensus 178 LD~~~~~~l~~~l~~~-----~~-----tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 229 (239)
+|+.....+.+.+.+. |. ||++.+||++. .+||++..+.+|+++ .++..
T Consensus 280 ~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Iv-ls~~l 338 (438)
T PRK07721 280 YTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFV-LDRQL 338 (438)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEE-EeccH
Confidence 9999887776665443 32 89999999984 789999999999997 55544
No 435
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.49 E-value=7.9e-14 Score=115.66 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=42.8
Q ss_pred CCCCChH--HHHHHHHHHHhccCCCEEEEeCCC-----CCCCHHHHHHHHHHHhhc
Q 026376 145 MYTLSGG--QKSRVAFAKITFKKPHIILLDEPS-----NHLDLDAVEALIQGLVLF 193 (239)
Q Consensus 145 ~~~LSgG--qkqrv~laral~~~p~llllDEPt-----~~LD~~~~~~l~~~l~~~ 193 (239)
.+..||+ |++++.|||+++.+|+++++|||| ++||+..++.+.+.+.+.
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 3445555 999999999999999999999999 999999999998888764
No 436
>PRK01156 chromosome segregation protein; Provisional
Probab=99.49 E-value=2.3e-13 Score=134.65 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=64.9
Q ss_pred CCCCCCChHHHHHHHH------HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcC--CEEEEEecCHHHHhhh
Q 026376 143 QPMYTLSGGQKSRVAF------AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQ--GGILMVSHDEHLISGS 210 (239)
Q Consensus 143 ~~~~~LSgGqkqrv~l------aral~~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~--~tii~vsHd~~~~~~~ 210 (239)
.++..|||||++|++| |++++.+|++++|||||++||+.....+.+.+. ..+ .+||+||||.+++. +
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~-~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLS-V 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHH-h
Confidence 4688999999999975 599999999999999999999999888877664 223 37999999999874 8
Q ss_pred cCeEEEEe
Q 026376 211 VEELWVVS 218 (239)
Q Consensus 211 ~d~i~~l~ 218 (239)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999987
No 437
>PRK03918 chromosome segregation protein; Provisional
Probab=99.47 E-value=1.3e-13 Score=135.95 Aligned_cols=76 Identities=29% Similarity=0.447 Sum_probs=65.3
Q ss_pred cCCCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcC
Q 026376 142 LQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE 212 (239)
Q Consensus 142 ~~~~~~LSgGqkq------rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d 212 (239)
.+++..|||||+| |++||++++.+|+++||||||++||+..+..+.+.+..+ +.+||+||||.++. .+||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCC
Confidence 3678899999999 556667888999999999999999999998888877553 45899999999865 5899
Q ss_pred eEEEEe
Q 026376 213 ELWVVS 218 (239)
Q Consensus 213 ~i~~l~ 218 (239)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.47 E-value=5.1e-14 Score=117.06 Aligned_cols=64 Identities=27% Similarity=0.482 Sum_probs=51.0
Q ss_pred CCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHH
Q 026376 144 PMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLI 207 (239)
Q Consensus 144 ~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~ 207 (239)
+...+|.|++|.+.|+.++...+ .++++|||-++|.|..+..+++.+.+. +..||++||.+.++
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45678999999998888887765 999999999999999999999888654 35799999998765
No 439
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.45 E-value=3.6e-12 Score=102.09 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=63.1
Q ss_pred cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 142 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 142 ~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
.+.....|.||----.+.+.+ .+.-++|||||-++|.+.-+..++..|.+ .|..+||+||.+-.+.-=.-+|+.++
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence 345678999998766666655 46689999999999999988777666654 46679999999977664457889998
Q ss_pred CCeEE
Q 026376 219 EGKAT 223 (239)
Q Consensus 219 ~G~i~ 223 (239)
.+.+.
T Consensus 203 ~~g~~ 207 (233)
T COG3910 203 ESGIE 207 (233)
T ss_pred cCCcc
Confidence 88764
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.45 E-value=5.9e-13 Score=107.63 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=61.2
Q ss_pred ccCCCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCC---HHHHHHH---HHHHhhcCCEEEEEecCHHH--
Q 026376 141 ALQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLD---LDAVEAL---IQGLVLFQGGILMVSHDEHL-- 206 (239)
Q Consensus 141 ~~~~~~~LSgGqkq------rv~laral~~~p~llllDEPt~~LD---~~~~~~l---~~~l~~~~~tii~vsHd~~~-- 206 (239)
.+.++..+|+|++| +...+.+...+|+++++|||++.+| ......+ ++.+++.+.|+|+++|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 45677899999998 5555555678999999999999999 5544444 44555667899999998765
Q ss_pred -------HhhhcCeEEEEe
Q 026376 207 -------ISGSVEELWVVS 218 (239)
Q Consensus 207 -------~~~~~d~i~~l~ 218 (239)
+..+||.++.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 678899999987
No 441
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=2.6e-13 Score=138.60 Aligned_cols=75 Identities=32% Similarity=0.424 Sum_probs=64.1
Q ss_pred CCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCEEEEEecCHHHHhh
Q 026376 144 PMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--------QGGILMVSHDEHLISG 209 (239)
Q Consensus 144 ~~~~LSgGqkq------rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--------~~tii~vsHd~~~~~~ 209 (239)
..+.||||||| |++||+|++.+|++|+|||||++||+.+...+.+.|... +.+||+||||++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 44799999999 999999999999999999999999999988777665432 4689999999999988
Q ss_pred hc-----CeEEEEe
Q 026376 210 SV-----EELWVVS 218 (239)
Q Consensus 210 ~~-----d~i~~l~ 218 (239)
+| +++|-+.
T Consensus 1276 ~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1276 LGRSEYVEKFYRLK 1289 (1311)
T ss_pred Hhhccccceeeeee
Confidence 75 5666553
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.42 E-value=5.8e-13 Score=133.28 Aligned_cols=78 Identities=23% Similarity=0.213 Sum_probs=69.9
Q ss_pred cCCCCCCChHHHHHHHHHHHhcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhh
Q 026376 142 LQPMYTLSGGQKSRVAFAKITFK--------KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS 210 (239)
Q Consensus 142 ~~~~~~LSgGqkqrv~laral~~--------~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~ 210 (239)
.+++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|.. .|.+|+||||..++..++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 47899999999999999999995 8999999999999999998888776644 467999999999999999
Q ss_pred cCeEEEEeC
Q 026376 211 VEELWVVSE 219 (239)
Q Consensus 211 ~d~i~~l~~ 219 (239)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 999988865
No 443
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.40 E-value=2.9e-12 Score=121.19 Aligned_cols=103 Identities=26% Similarity=0.296 Sum_probs=85.3
Q ss_pred HHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHH
Q 026376 131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEH 205 (239)
Q Consensus 131 l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~--p~llllDEPt~~LD~~~~~~l~~~l---~~~~~tii~vsHd~~ 205 (239)
|-.+||...-.+|...+|||||.||+.||.-+-+. -=+++||||+.||-+.....+++.| ++.|.|+|+|.||.+
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 44567765556788999999999999999999765 5688999999999998877776655 456789999999999
Q ss_pred HHhhhcCeEEEEe------CCeEEeeCCChhHHHHH
Q 026376 206 LISGSVEELWVVS------EGKATPFHGTFHDYKKM 235 (239)
Q Consensus 206 ~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~~ 235 (239)
.+. .||+++-|- .|+|+ +.|+++++.+.
T Consensus 545 ti~-~AD~iIDiGPgAG~~GGeIv-~~Gtp~~i~~~ 578 (935)
T COG0178 545 TIR-AADHIIDIGPGAGEHGGEIV-AEGTPEELLAN 578 (935)
T ss_pred HHh-hcCEEEeeCCCCCcCCCEEE-EccCHHHHHhC
Confidence 987 699999984 46676 89999998754
No 444
>PRK00064 recF recombination protein F; Reviewed
Probab=99.38 E-value=1.4e-12 Score=116.51 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCCCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhc--Ce
Q 026376 145 MYTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV--EE 213 (239)
Q Consensus 145 ~~~LSgGqkqrv~laral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~--d~ 213 (239)
...+|.||+|+++||++|+ .+|+|||||||+++||+..+..+.+.+.+.+..++++||+.+.+...+ ++
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~ 350 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAK 350 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCc
Confidence 4689999999999999986 799999999999999999999999999776668999999988776664 57
Q ss_pred EEEEeCCeE
Q 026376 214 LWVVSEGKA 222 (239)
Q Consensus 214 i~~l~~G~i 222 (239)
++.+++|++
T Consensus 351 i~~v~~G~i 359 (361)
T PRK00064 351 IFHVEQGKI 359 (361)
T ss_pred EEEEeCCEE
Confidence 999999987
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.37 E-value=9.8e-13 Score=132.69 Aligned_cols=76 Identities=28% Similarity=0.371 Sum_probs=65.6
Q ss_pred cCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEE
Q 026376 142 LQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW 215 (239)
Q Consensus 142 ~~~~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~ 215 (239)
+.++..|||||++|++||++++ .+|+++||||||++||+.+...+.+.+... +.+||||||++.++. +||+++
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~-~~d~~~ 1162 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTME-VADQLY 1162 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHH-HhhhHe
Confidence 4577899999999999999984 678999999999999999999888877654 358999999999874 799998
Q ss_pred EEe
Q 026376 216 VVS 218 (239)
Q Consensus 216 ~l~ 218 (239)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 653
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.32 E-value=3.3e-12 Score=111.87 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=90.3
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHH
Q 026376 48 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 127 (239)
Q Consensus 48 isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (239)
+++.+..|+.++|+||+|||||||+++|++++++..|.+.+.. .. .+.+.. +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied----------~~-El~~~~----------~~------ 189 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED----------TR-EIFLPH----------PN------ 189 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC----------cc-ccCCCC----------CC------
Confidence 4577889999999999999999999999999998877654321 11 011100 00
Q ss_pred HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-EEEEEecCHHH
Q 026376 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-GILMVSHDEHL 206 (239)
Q Consensus 128 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-tii~vsHd~~~ 206 (239)
.+.+............|- .-.++.+|-.+|+++++|||.+ .+ ...+++.+. .+. +++.++|..+.
T Consensus 190 -----~~~l~~~~~~~~~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~---~e-~~~~l~a~~-~g~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 190 -----YVHLFYSKGGQGLAKVTP----KDLLQSCLRMRPDRIILGELRG---DE-AFDFIRAVN-TGHPGSITTLHAGSP 255 (308)
T ss_pred -----EEEEEecCCCCCcCccCH----HHHHHHHhcCCCCeEEEeccCC---HH-HHHHHHHHh-cCCCeEEEEEeCCCH
Confidence 000000000000111222 2367778889999999999996 22 234455554 344 57999999985
Q ss_pred HhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 207 ISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 207 ~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
. ...+|+..|..|++. ..|.+.++.
T Consensus 256 ~-~~~~Rl~~l~~~~~~-~~g~~~~~~ 280 (308)
T TIGR02788 256 E-EAFEQLALMVKSSQA-GLGLDFAYI 280 (308)
T ss_pred H-HHHHHHHHHhhcccc-ccCCCHHHH
Confidence 5 458999988888875 345555544
No 447
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.30 E-value=5.7e-12 Score=93.03 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=38.8
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 90 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 90 (239)
..+|++++|++++|++++|+||||||||||++++. +|++.+.+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g 44 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVG 44 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEee
Confidence 45899999999999999999999999999999986 77887655
No 448
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.28 E-value=8.9e-12 Score=125.98 Aligned_cols=76 Identities=24% Similarity=0.190 Sum_probs=66.2
Q ss_pred CCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEE
Q 026376 143 QPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWV 216 (239)
Q Consensus 143 ~~~~~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~ 216 (239)
+++..||||||++++||++|+. .|+++|||||+++||+..+..+.+.|... +.++|+|||+...+ .+||+++.
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~~ 1148 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAIG 1148 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeEe
Confidence 4567899999999999999984 78999999999999999999998888765 34799999999866 68999987
Q ss_pred EeC
Q 026376 217 VSE 219 (239)
Q Consensus 217 l~~ 219 (239)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 753
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.27 E-value=2.4e-11 Score=95.11 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=74.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 136 (239)
+++|.|+||+|||||++.+++...+..|.+ .|+..+.. ........... ......+.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v--------~~~~~e~~------~~~~~~~~~~~------~~~~~~~~~~- 59 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV--------VYVDIEEE------IEELTERLIGE------SLKGALDNLI- 59 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE--------EEEECCcc------hHHHHHHHhhh------hhccccccEE-
Confidence 478999999999999999999887755554 33333211 01111100000 0000011111
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH----------HHHHHH---HHHHhhcCCEEEEEecC
Q 026376 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----------DAVEAL---IQGLVLFQGGILMVSHD 203 (239)
Q Consensus 137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~----------~~~~~l---~~~l~~~~~tii~vsHd 203 (239)
.........+..+.++.+.+++...+|+++++|||++-++. .....+ .+..++.+.++|+++|.
T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 136 (165)
T cd01120 60 ---IVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV 136 (165)
T ss_pred ---EEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 11122234456667788899999999999999999965443 333333 33334456799999997
Q ss_pred HHHH
Q 026376 204 EHLI 207 (239)
Q Consensus 204 ~~~~ 207 (239)
....
T Consensus 137 ~~~~ 140 (165)
T cd01120 137 PSGD 140 (165)
T ss_pred CCcc
Confidence 7544
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.25 E-value=1.8e-10 Score=112.87 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=50.9
Q ss_pred ccCCCEEEEeCCCCCC-CHHHHHHHHHHHh---hcCCEEEEEecCHHHHh---------hhcCeEEEEeCCeEE
Q 026376 163 FKKPHIILLDEPSNHL-DLDAVEALIQGLV---LFQGGILMVSHDEHLIS---------GSVEELWVVSEGKAT 223 (239)
Q Consensus 163 ~~~p~llllDEPt~~L-D~~~~~~l~~~l~---~~~~tii~vsHd~~~~~---------~~~d~i~~l~~G~i~ 223 (239)
..+|.++++|||+.+| |+.....+.+.++ +.+.++|++||+++.+. ..|++.++|.+|++.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~ 723 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR 723 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence 5799999999999999 6777776666554 45779999999998875 579999999999874
No 451
>PRK02224 chromosome segregation protein; Provisional
Probab=99.25 E-value=1.4e-11 Score=121.71 Aligned_cols=76 Identities=30% Similarity=0.475 Sum_probs=64.0
Q ss_pred CCCCCChHHHH------HHHHHHHhccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHhhc---CC-EEEEEecCHHHH
Q 026376 144 PMYTLSGGQKS------RVAFAKITFKK-----P-HIILLDEPSNHLDLDAVEALIQGLVLF---QG-GILMVSHDEHLI 207 (239)
Q Consensus 144 ~~~~LSgGqkq------rv~laral~~~-----p-~llllDEPt~~LD~~~~~~l~~~l~~~---~~-tii~vsHd~~~~ 207 (239)
++..||||||+ |+++|++++.+ | +++||||||++||+..+..+.+.|... +. +||+||||.+++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 89999998863 2 679999999999999988887766543 33 799999999998
Q ss_pred hhhcCeEEEEeCC
Q 026376 208 SGSVEELWVVSEG 220 (239)
Q Consensus 208 ~~~~d~i~~l~~G 220 (239)
. .||+++.|...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 6 69999999644
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.23 E-value=1.7e-10 Score=97.10 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=87.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh-cCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHH--
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIA-GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL-- 127 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~-Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 127 (239)
=+.+|.++.|.|++|||||||...++ +..+ .|+ .+.|+..+.. . ......+ ..+ +.+....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~-------~~~y~~~e~~----~-~~~~~~~-~~~-g~~~~~~~~ 84 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK--QGK-------KVYVITTENT----S-KSYLKQM-ESV-KIDISDFFL 84 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh--CCC-------EEEEEEcCCC----H-HHHHHHH-HHC-CCChhHHHh
Confidence 47789999999999999999998874 3222 121 2333332210 0 0111111 111 1111110
Q ss_pred HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc--CCCEEEEeCCCCC---CCHHHHHHHHHHH---hhcCCEEEE
Q 026376 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEPSNH---LDLDAVEALIQGL---VLFQGGILM 199 (239)
Q Consensus 128 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~--~p~llllDEPt~~---LD~~~~~~l~~~l---~~~~~tii~ 199 (239)
...+..+.. .-......|.++++.+..++.++. +|+++++||||+. .|......+++.+ ++.+.|+++
T Consensus 85 ~g~l~i~~~----~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvll 160 (234)
T PRK06067 85 WGYLRIFPL----NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILI 160 (234)
T ss_pred CCCceEEec----cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 001111111 011234567888999999998887 9999999999965 4454444554434 455679999
Q ss_pred EecCHHH-------HhhhcCeEEEEeC
Q 026376 200 VSHDEHL-------ISGSVEELWVVSE 219 (239)
Q Consensus 200 vsHd~~~-------~~~~~d~i~~l~~ 219 (239)
++|+..+ +..++|-++.|+.
T Consensus 161 t~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 161 TLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred EecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 9997654 5567788887763
No 453
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.16 E-value=2.8e-11 Score=109.98 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=42.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce-eEEecCc
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVFRSAK 91 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~~ 91 (239)
.+|++|||++.+||+++|+|||||||||||+ +|+..|++| +|.+++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~ 67 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT 67 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence 4799999999999999999999999999999 788888888 7988763
No 454
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=1e-10 Score=104.67 Aligned_cols=63 Identities=21% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCCChHHHHHHHHHHHhcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHh
Q 026376 146 YTLSGGQKSRVAFAKITFK---------KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLIS 208 (239)
Q Consensus 146 ~~LSgGqkqrv~laral~~---------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~ 208 (239)
..+|.||+++++||.+|+. +|+|||||||+++||+..+..+++.+.+.+.+|+++||+.+.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 3699999999999999999 99999999999999999999999999766679999999987655
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.12 E-value=4e-10 Score=92.61 Aligned_cols=118 Identities=15% Similarity=0.248 Sum_probs=72.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 135 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (239)
++.|.||+||||||+++.|++.+.+. .|.|.... ++.... .... . .......
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e---------~~~E~~-------------~~~~-~----~~i~q~~ 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE---------DPIEFV-------------HESK-R----SLINQRE 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc---------CCcccc-------------ccCc-c----ceeeecc
Confidence 78999999999999999998887643 45543211 111000 0000 0 0000000
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEE
Q 026376 136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW 215 (239)
Q Consensus 136 l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~ 215 (239)
+. .....++. +++++|..+|+++++|||. |.+....+++.. ..+..++.++|..+... ..+|++
T Consensus 56 vg-----~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~ 119 (198)
T cd01131 56 VG-----LDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAK-TIDRII 119 (198)
T ss_pred cC-----CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHH-HHhHHH
Confidence 00 00112222 6889999999999999996 777766666544 45778999999887654 466765
Q ss_pred EE
Q 026376 216 VV 217 (239)
Q Consensus 216 ~l 217 (239)
.+
T Consensus 120 ~l 121 (198)
T cd01131 120 DV 121 (198)
T ss_pred hh
Confidence 54
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.10 E-value=4.8e-09 Score=79.10 Aligned_cols=115 Identities=24% Similarity=0.297 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCc-eeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 132 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (239)
.+..+.|+||+|+||||+++.|+..+.... +-++.... . ..........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~----------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE---------D----ILEEVLDQLL----------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE---------E----ccccCHHHHH-----------------
Confidence 367899999999999999999999887654 22221110 0 0000000000
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH---------HHhhcCCEEEEEecC
Q 026376 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ---------GLVLFQGGILMVSHD 203 (239)
Q Consensus 133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~---------~l~~~~~tii~vsHd 203 (239)
. ..........++++..+..++++-...|.++++||+..-.+......... ........+|+++|.
T Consensus 51 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 51 --L---IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred --h---hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 0 01122335678888999999999888899999999999999887654432 112224578888884
No 457
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.05 E-value=6.1e-10 Score=110.52 Aligned_cols=77 Identities=29% Similarity=0.389 Sum_probs=64.1
Q ss_pred cCCCCCCChHHHHHHHHHHHhc------cC--CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh
Q 026376 142 LQPMYTLSGGQKSRVAFAKITF------KK--PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS 210 (239)
Q Consensus 142 ~~~~~~LSgGqkqrv~laral~------~~--p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~ 210 (239)
.+++.+|||||+-.++||-+|+ .+ -++|+|||||.+||++....+++.|... +.+|+||||+.++.. .
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~ 888 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-R 888 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-h
Confidence 3688999999999887777664 45 7999999999999999999887777543 569999999999986 5
Q ss_pred cCeEEEEeC
Q 026376 211 VEELWVVSE 219 (239)
Q Consensus 211 ~d~i~~l~~ 219 (239)
+|.++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 788887754
No 458
>PRK14079 recF recombination protein F; Provisional
Probab=99.04 E-value=6.6e-10 Score=98.97 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEE
Q 026376 146 YTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWV 216 (239)
Q Consensus 146 ~~LSgGqkqrv~laral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~ 216 (239)
..+|+||++++++|..|+ .+|+++|||||+++||...+.++.+.+.....++|-+| + ....|++++.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t-~---~~~~~~~~~~ 337 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGT-E---APPGAALTLR 337 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcC-C---CCCCCceEEE
Confidence 468999999999999998 89999999999999999999999998865443333333 3 3457899999
Q ss_pred EeCCeEEe
Q 026376 217 VSEGKATP 224 (239)
Q Consensus 217 l~~G~i~~ 224 (239)
+++|++..
T Consensus 338 ~~~~~~~~ 345 (349)
T PRK14079 338 IEAGVFTP 345 (349)
T ss_pred EeccEecC
Confidence 99998863
No 459
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=99.04 E-value=1.3e-09 Score=107.01 Aligned_cols=135 Identities=18% Similarity=0.161 Sum_probs=86.6
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-CCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 121 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 121 (239)
.+-+|+++. ..+.++.|.|||.+||||+||.++-.. -..-|. |+|-... .+ ..
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~----------~VPa~~a-~i----~~---------- 649 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS----------FVPAESA-RI----GI---------- 649 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC----------ceeccce-Ee----cc----------
Confidence 455777777 667899999999999999999986431 111121 1111100 00 00
Q ss_pred CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc--CCCEEEEeCC---CCCCCHHHH-HHHHHHHhhcC-
Q 026376 122 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEP---SNHLDLDAV-EALIQGLVLFQ- 194 (239)
Q Consensus 122 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~--~p~llllDEP---t~~LD~~~~-~~l~~~l~~~~- 194 (239)
+..++.++|-.+. ....+|-=+.....++.+|-. ++.++|+||| |+.+|..+. ..+++.+.+..
T Consensus 650 -----~d~I~triga~d~----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~ 720 (854)
T PRK05399 650 -----VDRIFTRIGASDD----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIG 720 (854)
T ss_pred -----cCeeeeccCcccc----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCC
Confidence 0011223343322 235677777777777777654 8999999999 999997764 34788887764
Q ss_pred CEEEEEecCHHHHhhhcCe
Q 026376 195 GGILMVSHDEHLISGSVEE 213 (239)
Q Consensus 195 ~tii~vsHd~~~~~~~~d~ 213 (239)
.++|++||..+.. .++++
T Consensus 721 ~~~l~aTH~~el~-~l~~~ 738 (854)
T PRK05399 721 AKTLFATHYHELT-ELEEK 738 (854)
T ss_pred ceEEEEechHHHH-HHhhh
Confidence 6899999996554 45654
No 460
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.01 E-value=1.6e-09 Score=98.51 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=55.9
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
...++.++++..|..+..+++.++ .|.+|++++|+|+||||||||+++|+++.+|+.|.|..
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~l 198 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIAL 198 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeee
Confidence 346899999999976667888885 99999999999999999999999999999999998865
No 461
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.01 E-value=1.5e-09 Score=88.84 Aligned_cols=109 Identities=22% Similarity=0.234 Sum_probs=68.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHH-h--C-CCCcHHHHHHHHH
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-C--F-PGVPEQKLRAHLG 132 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~l~ 132 (239)
+++|+||||||||||.++|++++ ..|.+ .++.++.+. ............. . . ...+.+...+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~--------~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV--------VIISQDSYY-KDLSHEELEERKNNNYDHPDAFDFDLLISHLQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe--------EEEEecccc-cccccccHHHhccCCCCCCCcccHHHHHHHHH
Confidence 58999999999999999999987 23333 233333211 0011111111000 0 0 1123345556676
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180 (239)
Q Consensus 133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~ 180 (239)
.+.... ....|..+.|.|++++..+ .+..++++|+|.|+.+.++
T Consensus 70 ~l~~~~-~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 70 DLKNGK-SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHCCC-CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 666543 3467888999999877655 5788999999999999986
No 462
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.98 E-value=8.6e-09 Score=94.12 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=42.7
Q ss_pred cCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376 38 YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87 (239)
Q Consensus 38 y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~ 87 (239)
|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+.
T Consensus 147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~ 195 (440)
T TIGR01026 147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIA 195 (440)
T ss_pred ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEE
Confidence 43345688999 99999999999999999999999999999999877553
No 463
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.96 E-value=1.2e-09 Score=111.82 Aligned_cols=66 Identities=27% Similarity=0.269 Sum_probs=57.8
Q ss_pred cCCCCCCChHHHHHHH----HHHH--------hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 026376 142 LQPMYTLSGGQKSRVA----FAKI--------TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 207 (239)
Q Consensus 142 ~~~~~~LSgGqkqrv~----lara--------l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~ 207 (239)
++.++.|||||||+++ +|++ +..+|++++|||||++||+.++..+++.+.+++.++||+||++.-.
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~Wg~ 1319 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREWGC 1319 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchhcc
Confidence 3456899999999996 5655 5589999999999999999999999999999988999999987644
No 464
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.92 E-value=3.1e-09 Score=97.72 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=90.4
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhC--C-
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF--P- 120 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~- 120 (239)
++++.++.+.+|.+++++||||+||||++..|++.+....|.. +++++.++.+. ... ...+..+...+ +
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~------kV~LI~~Dt~R-igA-~EQLr~~AeilGVpv 316 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS------KVALLTTDSYR-IGG-HEQLRIYGKILGVPV 316 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC------eEEEEeCCccc-hhH-HHHHHHHHHHhCCCe
Confidence 4556777788999999999999999999999999887776642 46777776521 110 01111222211 1
Q ss_pred CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH-HHHHHHhccCC-----CEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 026376 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR-VAFAKITFKKP-----HIILLDEPSNHLDLDAVEALIQGLVLFQ 194 (239)
Q Consensus 121 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr-v~laral~~~p-----~llllDEPt~~LD~~~~~~l~~~l~~~~ 194 (239)
..............++.+ .....+.+...+++.. +.-+.+++.++ .+|+||.++.+-+. .++.+.++..+
T Consensus 317 ~~~~~~~Dl~~aL~~L~d-~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l---~~i~~~f~~~~ 392 (484)
T PRK06995 317 HAVKDAADLRLALSELRN-KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTL---NEVVQAYRGPG 392 (484)
T ss_pred eccCCchhHHHHHHhccC-CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHH---HHHHHHhccCC
Confidence 011112222333444443 2234556644444322 23333344443 78999999988443 33444444444
Q ss_pred CEEEEEec-C--------HHHHhhhcCeEEEEeCCeE
Q 026376 195 GGILMVSH-D--------EHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 195 ~tii~vsH-d--------~~~~~~~~d~i~~l~~G~i 222 (239)
.+-+|.|+ | ++.+.+..=-|..+..|+-
T Consensus 393 ~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~ 429 (484)
T PRK06995 393 LAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQR 429 (484)
T ss_pred CCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCC
Confidence 44444454 2 1222223334677777764
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.91 E-value=4.6e-09 Score=88.66 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=32.7
Q ss_pred HhccCCCEEEEeCCCCC------CCHHHHHHHHHHHh----hcCCEEEEEecCH
Q 026376 161 ITFKKPHIILLDEPSNH------LDLDAVEALIQGLV----LFQGGILMVSHDE 204 (239)
Q Consensus 161 al~~~p~llllDEPt~~------LD~~~~~~l~~~l~----~~~~tii~vsHd~ 204 (239)
+...+|+++++| |++. +|+.....+++.|. +.+.+||+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 8764 68877777666553 3467999999976
No 466
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.90 E-value=3.7e-08 Score=84.86 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=61.3
Q ss_pred CCCChHHHHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC--EEEEEecCHHHHhhhcCeEEEE
Q 026376 146 YTLSGGQKSRVAFAKITFK--KPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 146 ~~LSgGqkqrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--tii~vsHd~~~~~~~~d~i~~l 217 (239)
..||-|+.+-+++|.+|.+ .|.+++||||-++|-|.....+...+++..+ -||++||..+++..+--+-++.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~~v~~ 344 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSVFW 344 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhccccceEE
Confidence 4899999999999999986 6999999999999999998888888876543 6999999999988765444433
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.85 E-value=2.9e-11 Score=112.03 Aligned_cols=148 Identities=15% Similarity=0.174 Sum_probs=83.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHH--hcCcCCCceeEEecCc----------eEEEEEeeccCCCCCCCCcHHHHHHHh
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLI--AGELQPSSGTVFRSAK----------VRIAVFSQHHVDGLDLSSNPLLYMMRC 118 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l--~Gl~~p~~G~i~~~~~----------~~~~~~~q~~~~~~~~~~~~~~~~~~~ 118 (239)
=+.+|..+.|.|++|||||||...+ .|..++.+.-+++... ..+||-.+.....- .+ ..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g--------~l-~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG--------KL-FI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--------ce-EE
Confidence 3678999999999999999998765 4555433333332110 01111111100000 00 00
Q ss_pred CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHHHHH---HHHHHhhc
Q 026376 119 FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA--KITFKKPHIILLDEPSNHLDLDAVEA---LIQGLVLF 193 (239)
Q Consensus 119 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la--ral~~~p~llllDEPt~~LD~~~~~~---l~~~l~~~ 193 (239)
...........+++.+++.. ..++....+|+|++|||.|+ .+|...|+.. ...+.. +++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~-~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~ 156 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSA-LIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQI 156 (484)
T ss_pred EecCchhccccccccCCHHH-HHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHC
Confidence 00000001112233445432 34556678999999999999 5565555443 233333 44555666
Q ss_pred CCEEEEEecCHHH---------HhhhcCeEEEEe
Q 026376 194 QGGILMVSHDEHL---------ISGSVEELWVVS 218 (239)
Q Consensus 194 ~~tii~vsHd~~~---------~~~~~d~i~~l~ 218 (239)
+.|+|++||+.+. ...+||.|+.|+
T Consensus 157 g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 157 GVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred CCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 7899999998764 266899999886
No 468
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.85 E-value=2.1e-08 Score=101.94 Aligned_cols=142 Identities=20% Similarity=0.363 Sum_probs=78.6
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-CCCceeEEecCceEEEEEeecc--CCCCCCCC-cHHHHHHHhCCCCc
Q 026376 48 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHH--VDGLDLSS-NPLLYMMRCFPGVP 123 (239)
Q Consensus 48 isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~~~~~~q~~--~~~~~~~~-~~~~~~~~~~~~~~ 123 (239)
+++....+++++|+|++|+|||||++++++.+ ...+|.++++.. ++.+.. ........ .....+ .
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~----~v~~~~~~~~~~~~~~~~~~~~l-------~ 268 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA----FISKSMEIYSSANPDDYNMKLHL-------Q 268 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc----ccccchhhcccccccccchhHHH-------H
Confidence 46778889999999999999999999996654 445777765431 111100 00000000 000000 1
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEE
Q 026376 124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMV 200 (239)
Q Consensus 124 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~v 200 (239)
.+.+.++++..++ .+..+ ++.++| |..++-+|+||+- |.......+....++ |.+||++
T Consensus 269 ~~~l~~il~~~~~-------~~~~~-~~~~~~------L~~krvLLVLDdv----~~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 269 RAFLSEILDKKDI-------KIYHL-GAMEER------LKHRKVLIFIDDL----DDQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred HHHHHHHhCCCCc-------ccCCH-HHHHHH------HhCCeEEEEEeCC----CCHHHHHHHHhhCccCCCCcEEEEE
Confidence 1223333333332 12222 555555 3466778888984 433322222222222 4589999
Q ss_pred ecCHHHHhhh-cCeEEEEe
Q 026376 201 SHDEHLISGS-VEELWVVS 218 (239)
Q Consensus 201 sHd~~~~~~~-~d~i~~l~ 218 (239)
|||...+... +++++.+.
T Consensus 331 Trd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred eCcHHHHHhcCCCeEEEec
Confidence 9999998754 67887764
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.84 E-value=1.6e-09 Score=88.03 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=39.6
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376 45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89 (239)
Q Consensus 45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 89 (239)
.+-+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie 59 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIE 59 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC
Confidence 344667899999999999999999999999999999998887653
No 470
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.74 E-value=4.3e-08 Score=93.38 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=70.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHH-HHHHhCCCCcHHHHHHHHH
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL-YMMRCFPGVPEQKLRAHLG 132 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 132 (239)
..+.++|+||||+|||||+++|.+..++..|.-.... ..++..+.. .+........ .+...........+.+.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~---~~fv~i~~~-~l~~d~~~i~~~llg~~~~~~~~~a~~~l~ 249 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAED---APFVEVDGT-TLRWDPREVTNPLLGSVHDPIYQGARRDLA 249 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCC---CCeEEEech-hccCCHHHHhHHhcCCccHHHHHHHHHHHH
Confidence 3467999999999999999999999876655421100 112211110 0000000000 1111110111223455677
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 192 (239)
Q Consensus 133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 192 (239)
.+|+.. .....+..+||| +|+||| +..||+..+..+.+.+.+
T Consensus 250 ~~gl~~-~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 250 ETGVPE-PKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HcCCCc-hhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 788864 345677899999 999999 899999999998888864
No 471
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.73 E-value=2.7e-08 Score=90.45 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=53.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
.++.+.++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+..
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~ 188 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL 188 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEE
Confidence 577888888886567799999 999999999999999999999999999999999876643
No 472
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.72 E-value=2.3e-08 Score=89.65 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=49.3
Q ss_pred eEEEEeeEEEcCCCCceee-----------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 28 IISFSDASFGYPGGPILFK-----------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~-----------~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
-+.++||++.|++.+.+|+ |+++.|.+|+.++|+||.|||||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 5899999999987667887 99999999999999999999999999999987653
No 473
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.72 E-value=1.9e-08 Score=66.84 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=31.1
Q ss_pred eeeeeEEEeC-CCEEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376 45 FKNLNFGIDL-DSRIAMVGPNGIGKSTILKLIAGELQPSS 83 (239)
Q Consensus 45 l~~isl~i~~-Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~ 83 (239)
+++.++++.+ |+++.|.||||||||||+.+|.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4456677775 56999999999999999999977665543
No 474
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.71 E-value=7.9e-08 Score=85.51 Aligned_cols=113 Identities=22% Similarity=0.299 Sum_probs=68.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 130 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (239)
..++..+.|.||+||||||+++++.+.+. +..+.|..- .++.. .. .+.. ...+.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti---------Edp~E----------~~---~~~~-~~~i~-- 173 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI---------EDPIE----------YV---HRNK-RSLIN-- 173 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE---------cCChh----------hh---ccCc-cceEE--
Confidence 35688999999999999999999998765 345555321 11110 00 0000 00000
Q ss_pred HHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 026376 131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL 206 (239)
Q Consensus 131 l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~ 206 (239)
-...+. ...+ -.-+++++|-.+|+++++||+. |.++....++.. ..|..|+.+.|-.+.
T Consensus 174 q~evg~---------~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 174 QREVGL---------DTLS----FANALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTNSA 232 (343)
T ss_pred ccccCC---------CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCCCH
Confidence 000111 0111 1235788999999999999997 888877666643 447789999997443
No 475
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.71 E-value=7.8e-07 Score=75.05 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=33.1
Q ss_pred ccCCCEEEEeCCCCCCCHHHHH----HHHHHHhh-cCCEEEEEecCHHHHh
Q 026376 163 FKKPHIILLDEPSNHLDLDAVE----ALIQGLVL-FQGGILMVSHDEHLIS 208 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~----~l~~~l~~-~~~tii~vsHd~~~~~ 208 (239)
+.+..++|+||+..|=++.... .+++.|.+ .+..+|++||+.+...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 3467899999999999987544 45667766 4667999999998754
No 476
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.70 E-value=2.8e-07 Score=90.94 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=42.9
Q ss_pred HHHHhccCCCEEEEeCCCCCC-CHHHHHHHHHHH---hhcCCEEEEEecCHHHHhh
Q 026376 158 FAKITFKKPHIILLDEPSNHL-DLDAVEALIQGL---VLFQGGILMVSHDEHLISG 209 (239)
Q Consensus 158 laral~~~p~llllDEPt~~L-D~~~~~~l~~~l---~~~~~tii~vsHd~~~~~~ 209 (239)
|++++..+|+++++|||+.+| |+.....+.+.+ ++.+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 577888999999999999999 677766665554 4557799999999998875
No 477
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.69 E-value=1e-07 Score=74.36 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=72.2
Q ss_pred EEEECCCCCcHHHHHHHHh--cCcCCCceeEEecCceEE-----EEEeeccCCCCCCCC------cHHHH----HHHh--
Q 026376 58 IAMVGPNGIGKSTILKLIA--GELQPSSGTVFRSAKVRI-----AVFSQHHVDGLDLSS------NPLLY----MMRC-- 118 (239)
Q Consensus 58 ~~iiG~NGsGKSTLl~~l~--Gl~~p~~G~i~~~~~~~~-----~~~~q~~~~~~~~~~------~~~~~----~~~~-- 118 (239)
++|+|++|||||||++.|+ +..++.+|++........ .+..-+. .++.... ..... ....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDL-PGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecC-CCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 6899999999999999999 777777776432111100 1111111 1111100 00000 0000
Q ss_pred ----------CC-C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeCCCCCCCH
Q 026376 119 ----------FP-G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI-----TFKKPHIILLDEPSNHLDL 180 (239)
Q Consensus 119 ----------~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara-----l~~~p~llllDEPt~~LD~ 180 (239)
.. . ....++.+++..++..-.....++..+|++++++...... ....++++ |+|++|.
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~ 156 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKG 156 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCC
Confidence 00 0 1123345566666543222233467789998887765554 23456666 9999999
Q ss_pred HHHHHHHHHHhh
Q 026376 181 DAVEALIQGLVL 192 (239)
Q Consensus 181 ~~~~~l~~~l~~ 192 (239)
.+..++.+.+.+
T Consensus 157 ~~~~~l~~~l~~ 168 (170)
T cd01876 157 QGIDELRALIEK 168 (170)
T ss_pred CCHHHHHHHHHH
Confidence 999998888764
No 478
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.66 E-value=5.2e-08 Score=85.68 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=46.1
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376 33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87 (239)
Q Consensus 33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~ 87 (239)
.++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+.
T Consensus 48 ~~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~ 101 (326)
T cd01136 48 PIDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIA 101 (326)
T ss_pred cceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEE
Confidence 3444554456789999 99999999999999999999999999999999877654
No 479
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.61 E-value=1.3e-08 Score=85.27 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=23.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIA 76 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~ 76 (239)
-+++|+.+.|.|++|||||||...++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 47899999999999999999987654
No 480
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.60 E-value=4.8e-08 Score=79.44 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=88.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 136 (239)
+++|+|.-||||||+.+.+.-.. |-..++ . ......+.. ....-..++.+.||-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~----~~~~i~-----------------~-D~~~~~~~~----~~~~~~~~i~~~fg~ 54 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY----HFPVID-----------------A-DKIAHQVVE----KGSPAYEKIVDHFGA 54 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc----CCeEEe-----------------C-CHHHHHHHh----cCChHHHHHHHHHCH
Confidence 48999999999999999997542 111110 0 011111111 112223455566663
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHH--Hhhhc
Q 026376 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHL--ISGSV 211 (239)
Q Consensus 137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~--~~~~~ 211 (239)
. ..+. -|+-+|..||.++..+|+.+..+| +.+||.....+.+.+.+. +.+||+.+|.+.. +...|
T Consensus 55 ~--i~~~------~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~ 124 (188)
T TIGR00152 55 Q--ILNE------DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLC 124 (188)
T ss_pred H--HhCC------CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhC
Confidence 1 2111 388999999999999999988887 889999988888777653 3489999998865 67789
Q ss_pred CeEEEEeCCe
Q 026376 212 EELWVVSEGK 221 (239)
Q Consensus 212 d~i~~l~~G~ 221 (239)
|.+++++.+.
T Consensus 125 D~vv~V~~~~ 134 (188)
T TIGR00152 125 DRVIVVDVSP 134 (188)
T ss_pred CEEEEEECCH
Confidence 9999987654
No 481
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.60 E-value=6.6e-08 Score=69.43 Aligned_cols=51 Identities=31% Similarity=0.404 Sum_probs=38.3
Q ss_pred cCCCCCCChHHHHH-HHHHH--Hh----cc------CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376 142 LQPMYTLSGGQKSR-VAFAK--IT----FK------KPHIILLDEPSNHLDLDAVEALIQGLVL 192 (239)
Q Consensus 142 ~~~~~~LSgGqkqr-v~lar--al----~~------~p~llllDEPt~~LD~~~~~~l~~~l~~ 192 (239)
.++.+.+||||||. +++|. |+ .. .|.+++|||||++||.+.+..+++.+++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 35678999999954 33333 32 22 3799999999999999999999988753
No 482
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=4.4e-08 Score=89.04 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=39.4
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
+..+++++ |++.+|++++|+|+||+|||||+++|+|+.+++.+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 34689999 99999999999999999999999999999988753
No 483
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.60 E-value=4.5e-08 Score=90.76 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=52.6
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376 31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 90 (239)
Q Consensus 31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 90 (239)
+.|++..|+ ...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++..+.
T Consensus 187 ~~d~~~v~G-q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~ 245 (506)
T PRK09862 187 QHDLSDVIG-QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES 245 (506)
T ss_pred ccCeEEEEC-cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence 458888884 45688999999999999999999999999999999999999999886554
No 484
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.58 E-value=1.9e-06 Score=84.74 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=36.3
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
.+||.+..+..++|+|++|||||||++.|++......+++.+
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~ 479 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFF 479 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEE
Confidence 357888888999999999999999999999988777777754
No 485
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.55 E-value=3.9e-07 Score=73.86 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHH--HHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA--FAKITFK-KPHIILLDEPSNHLDLDAVEALIQGLVL 192 (239)
Q Consensus 126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~--laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~ 192 (239)
++.++++..++.-.....++..+|+|++|++. +++.+-. .++++ |+|++|..+...+.+.+.+
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~ 191 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAK 191 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHH
Confidence 34456666665423333466789999999977 6566544 34443 9999999999888887764
No 486
>PRK08149 ATP synthase SpaL; Validated
Probab=98.53 E-value=1.7e-07 Score=85.18 Aligned_cols=49 Identities=14% Similarity=0.347 Sum_probs=42.7
Q ss_pred CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc---eeEEec
Q 026376 40 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFRS 89 (239)
Q Consensus 40 ~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~ 89 (239)
.+..+++++ +++.+|++++|+|+||+|||||+++|++...++. |.|...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~r 188 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGER 188 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeC
Confidence 345689999 9999999999999999999999999999998876 655443
No 487
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.51 E-value=1.4e-07 Score=85.96 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=39.1
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEe
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFR 88 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~ 88 (239)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.++ +.|.|..
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~l 198 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIAL 198 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEE
Confidence 4578887 99999999999999999999999999998854 4455543
No 488
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.50 E-value=1.5e-07 Score=85.78 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=46.0
Q ss_pred eEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 34 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 34 l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
++..+..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+..
T Consensus 125 i~~~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~ 178 (422)
T TIGR02546 125 IDQPLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIAL 178 (422)
T ss_pred cccccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 344444455689999 999999999999999999999999999999999887643
No 489
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.50 E-value=2.8e-07 Score=83.57 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=47.7
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i 86 (239)
++-..++..|..+..+++.+ |.+.+|++++|+|+||+|||||+++|++...|+.+.+
T Consensus 112 ~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi 168 (411)
T TIGR03496 112 LKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVV 168 (411)
T ss_pred HhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 45556666665456688888 9999999999999999999999999999999986654
No 490
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.49 E-value=2e-07 Score=84.62 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=47.8
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
++-..++--+..+..+++ .+|.+.+|++++|+|+||+|||||+++|++..+|+.|.|..
T Consensus 115 ~~R~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~ 173 (418)
T TIGR03498 115 MSRARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIAL 173 (418)
T ss_pred hhccCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 344445555544555665 69999999999999999999999999999999999887653
No 491
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.48 E-value=2.2e-07 Score=84.72 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=43.8
Q ss_pred CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376 40 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89 (239)
Q Consensus 40 ~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 89 (239)
.+..+++++ |.+.+|++++|+|+||+|||||+++|++...++.|.|...
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~i 197 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALI 197 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEE
Confidence 345689999 9999999999999999999999999999999998876543
No 492
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.47 E-value=1.8e-06 Score=65.55 Aligned_cols=106 Identities=22% Similarity=0.327 Sum_probs=63.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 133 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (239)
.+..+.|.||.|+|||||++.++.........+ .++..... . ..... ......
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v--------~~~~~~~~-----~-~~~~~-------------~~~~~~ 70 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPF--------LYLNASDL-----L-EGLVV-------------AELFGH 70 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe--------EEEehhhh-----h-hhhHH-------------HHHhhh
Confidence 578899999999999999999998875322222 12111000 0 00000 000000
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCEEEEEecCHH
Q 026376 134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--------QGGILMVSHDEH 205 (239)
Q Consensus 134 ~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--------~~tii~vsHd~~ 205 (239)
. .+......+...++.++++||.-.. +......+.+.+... +..+|+++++..
T Consensus 71 ~------------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 F------------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred h------------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0 5556667777889999999997765 444445555544432 347888888654
No 493
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=1.6e-06 Score=77.72 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=33.5
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++++.++.+.+|++++++||||+||||++..|++...
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35677888999999999999999999999999998653
No 494
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.46 E-value=8.5e-07 Score=87.19 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=35.0
Q ss_pred ccCCCEEEEeCC---CCCCCHHH-HHHHHHHHhh-cCCEEEEEecCHHHHh
Q 026376 163 FKKPHIILLDEP---SNHLDLDA-VEALIQGLVL-FQGGILMVSHDEHLIS 208 (239)
Q Consensus 163 ~~~p~llllDEP---t~~LD~~~-~~~l~~~l~~-~~~tii~vsHd~~~~~ 208 (239)
+.++.++|+||+ |+.+|-.+ ...+++.+.+ .+..++++||..+...
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 568899999999 66666555 3457787777 5668999999987654
No 495
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.44 E-value=1.5e-07 Score=77.23 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=26.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999875
No 496
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.44 E-value=3e-07 Score=83.43 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=45.4
Q ss_pred eEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376 34 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87 (239)
Q Consensus 34 l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~ 87 (239)
++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|++..+++.|.|.
T Consensus 117 ~~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~ 169 (413)
T TIGR03497 117 IRDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIA 169 (413)
T ss_pred hhhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEE
Confidence 344454455689999 99999999999999999999999999999999888664
No 497
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.44 E-value=1.6e-07 Score=75.85 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
+|++++|+|+||||||||+++|+|++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6999999999999999999999999877
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.43 E-value=1.8e-07 Score=75.92 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
|++++|+||||||||||+++|++...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 789999999999999999999998765
No 499
>PRK05922 type III secretion system ATPase; Validated
Probab=98.43 E-value=6e-07 Score=81.65 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=44.0
Q ss_pred eEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376 34 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87 (239)
Q Consensus 34 l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~ 87 (239)
++.-+..+..+++.+ +.+.+|++++|+|+||+|||||+++|+|..+++.|.+.
T Consensus 137 i~e~l~TGIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~ 189 (434)
T PRK05922 137 IQEIFPTGIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIA 189 (434)
T ss_pred cceecCCCceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEE
Confidence 333343344577776 99999999999999999999999999999999988774
No 500
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.40 E-value=1.8e-07 Score=77.20 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=27.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57899999999999999999999999875
Done!