Query 026376
Match_columns 239
No_of_seqs 397 out of 1512
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-55 5.7E-60 377.8 24.7 206 26-234 5-233 (275)
2 3tui_C Methionine import ATP-b 100.0 1.1E-54 3.9E-59 384.4 25.8 205 25-233 21-252 (366)
3 3tif_A Uncharacterized ABC tra 100.0 9E-55 3.1E-59 365.7 23.4 202 28-233 1-233 (235)
4 2olj_A Amino acid ABC transpor 100.0 4.1E-54 1.4E-58 367.1 26.6 203 27-234 23-248 (263)
5 1b0u_A Histidine permease; ABC 100.0 5.4E-54 1.9E-58 366.4 25.7 202 27-233 5-241 (262)
6 3fvq_A Fe(3+) IONS import ATP- 100.0 3.7E-54 1.2E-58 380.8 24.4 202 28-234 4-228 (359)
7 4g1u_C Hemin import ATP-bindin 100.0 4.4E-54 1.5E-58 367.6 23.8 202 27-233 10-236 (266)
8 1vpl_A ABC transporter, ATP-bi 100.0 7.8E-54 2.7E-58 364.1 24.2 204 26-234 13-235 (256)
9 2pcj_A ABC transporter, lipopr 100.0 6.5E-54 2.2E-58 358.0 23.2 196 27-228 3-222 (224)
10 1z47_A CYSA, putative ABC-tran 100.0 1.6E-53 5.4E-58 376.6 26.0 206 25-234 11-235 (355)
11 3rlf_A Maltose/maltodextrin im 100.0 1E-53 3.6E-58 380.3 24.5 202 28-234 3-223 (381)
12 1ji0_A ABC transporter; ATP bi 100.0 1.1E-53 3.9E-58 360.1 22.8 203 26-233 4-227 (240)
13 2ihy_A ABC transporter, ATP-bi 100.0 4.4E-54 1.5E-58 369.9 20.0 205 25-232 18-250 (279)
14 1g6h_A High-affinity branched- 100.0 4.6E-54 1.6E-58 365.9 19.5 201 26-231 5-239 (257)
15 2yz2_A Putative ABC transporte 100.0 8E-53 2.7E-57 359.9 24.2 204 28-234 2-227 (266)
16 2yyz_A Sugar ABC transporter, 100.0 1.2E-52 4.1E-57 371.7 25.6 202 28-234 3-223 (359)
17 2it1_A 362AA long hypothetical 100.0 1.5E-52 5E-57 371.5 25.4 202 28-234 3-223 (362)
18 1oxx_K GLCV, glucose, ABC tran 100.0 8.1E-53 2.8E-57 372.6 22.7 202 28-234 3-230 (353)
19 2nq2_C Hypothetical ABC transp 100.0 9.2E-53 3.2E-57 357.0 21.9 198 28-232 4-215 (253)
20 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-52 3.7E-57 370.8 23.1 200 28-233 1-216 (348)
21 1g29_1 MALK, maltose transport 100.0 3.3E-52 1.1E-56 370.9 26.1 202 28-234 3-229 (372)
22 2onk_A Molybdate/tungstate ABC 100.0 1.8E-52 6.1E-57 352.7 22.9 199 28-234 1-216 (240)
23 1v43_A Sugar-binding transport 100.0 2.7E-52 9.4E-57 371.0 24.2 202 28-234 11-231 (372)
24 2ff7_A Alpha-hemolysin translo 100.0 5E-52 1.7E-56 351.4 24.2 201 28-233 7-231 (247)
25 3nh6_A ATP-binding cassette SU 100.0 6.3E-52 2.1E-56 360.2 24.3 203 27-234 52-277 (306)
26 2zu0_C Probable ATP-dependent 100.0 4.6E-52 1.6E-56 355.4 22.4 205 25-233 17-253 (267)
27 2pjz_A Hypothetical protein ST 100.0 3.1E-52 1.1E-56 355.5 21.0 200 28-234 1-215 (263)
28 1mv5_A LMRA, multidrug resista 100.0 4.1E-52 1.4E-56 351.1 19.3 202 28-234 1-226 (243)
29 2ixe_A Antigen peptide transpo 100.0 3.8E-51 1.3E-55 350.3 24.3 202 27-234 15-245 (271)
30 2d2e_A SUFC protein; ABC-ATPas 100.0 7.9E-52 2.7E-56 350.8 19.1 200 28-231 3-230 (250)
31 2pze_A Cystic fibrosis transme 100.0 1.6E-50 5.4E-55 338.6 24.6 200 27-234 5-218 (229)
32 2cbz_A Multidrug resistance-as 100.0 6.8E-51 2.3E-55 342.5 21.8 199 28-234 3-217 (237)
33 2qi9_C Vitamin B12 import ATP- 100.0 5.6E-51 1.9E-55 345.2 21.3 196 28-233 4-221 (249)
34 2ghi_A Transport protein; mult 100.0 2E-50 7E-55 343.9 23.7 202 27-234 16-242 (260)
35 1sgw_A Putative ABC transporte 100.0 5.4E-51 1.9E-55 338.0 16.4 190 26-222 8-210 (214)
36 3gd7_A Fusion complex of cysti 100.0 2.3E-49 7.7E-54 354.2 20.5 201 26-234 17-242 (390)
37 3qf4_B Uncharacterized ABC tra 100.0 1.6E-48 5.6E-53 366.9 21.5 203 27-234 353-578 (598)
38 3b5x_A Lipid A export ATP-bind 100.0 9.3E-48 3.2E-52 360.9 24.4 203 27-234 340-567 (582)
39 4a82_A Cystic fibrosis transme 100.0 5.9E-48 2E-52 361.9 22.7 203 27-234 338-564 (578)
40 3b60_A Lipid A export ATP-bind 100.0 7.7E-48 2.6E-52 361.4 23.1 203 27-234 340-567 (582)
41 2bbs_A Cystic fibrosis transme 100.0 1.1E-47 3.8E-52 331.6 21.4 197 26-234 38-247 (290)
42 3qf4_A ABC transporter, ATP-bi 100.0 4.2E-47 1.4E-51 356.6 25.2 204 27-235 340-567 (587)
43 2yl4_A ATP-binding cassette SU 100.0 2.5E-47 8.6E-52 358.8 22.5 201 29-234 342-570 (595)
44 1yqt_A RNAse L inhibitor; ATP- 100.0 8.9E-46 3E-50 344.1 19.7 202 25-234 284-493 (538)
45 3bk7_A ABC transporter ATP-bin 100.0 1.6E-45 5.6E-50 346.1 19.5 202 25-234 354-563 (607)
46 2iw3_A Elongation factor 3A; a 100.0 2.1E-45 7.2E-50 357.5 19.5 202 25-227 668-980 (986)
47 4f4c_A Multidrug resistance pr 100.0 1.1E-44 3.7E-49 365.7 20.9 204 27-235 1075-1305(1321)
48 3ozx_A RNAse L inhibitor; ATP 100.0 3.7E-44 1.3E-48 332.9 21.3 189 25-219 266-461 (538)
49 4f4c_A Multidrug resistance pr 100.0 3.3E-44 1.1E-48 362.2 20.8 202 28-234 415-641 (1321)
50 3g5u_A MCG1178, multidrug resi 100.0 1E-43 3.5E-48 357.8 22.5 203 27-234 386-613 (1284)
51 3j16_B RLI1P; ribosome recycli 100.0 9.6E-44 3.3E-48 333.8 18.8 197 32-234 350-559 (608)
52 3g5u_A MCG1178, multidrug resi 100.0 3.4E-43 1.2E-47 354.0 20.8 203 27-234 1029-1258(1284)
53 2iw3_A Elongation factor 3A; a 100.0 1.9E-42 6.4E-47 336.8 23.0 200 28-234 435-635 (986)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-43 1.1E-47 326.9 14.7 187 29-220 21-234 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 8.5E-43 2.9E-47 327.7 16.0 188 28-220 83-304 (607)
56 3j16_B RLI1P; ribosome recycli 100.0 3.3E-40 1.1E-44 309.9 16.8 186 33-221 82-298 (608)
57 3ux8_A Excinuclease ABC, A sub 100.0 3E-39 1E-43 307.5 16.9 190 42-233 31-297 (670)
58 3ozx_A RNAse L inhibitor; ATP 100.0 3.6E-39 1.2E-43 299.4 15.0 184 32-221 3-214 (538)
59 3ux8_A Excinuclease ABC, A sub 100.0 2.4E-37 8.1E-42 294.5 17.7 107 125-233 521-639 (670)
60 2vf7_A UVRA2, excinuclease ABC 100.0 2.3E-35 7.7E-40 284.5 20.4 108 125-234 708-827 (842)
61 2npi_A Protein CLP1; CLP1-PCF1 100.0 2E-39 6.9E-44 295.9 -11.8 193 26-233 116-337 (460)
62 2r6f_A Excinuclease ABC subuni 100.0 8E-35 2.7E-39 281.8 16.7 106 126-233 824-941 (972)
63 3pih_A Uvrabc system protein A 100.0 5.8E-34 2E-38 276.7 22.4 108 125-234 783-902 (916)
64 2ygr_A Uvrabc system protein A 100.0 9.3E-34 3.2E-38 275.1 20.1 107 126-234 842-960 (993)
65 4aby_A DNA repair protein RECN 100.0 1.1E-33 3.7E-38 254.6 18.6 75 148-223 296-378 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 2.5E-31 8.5E-36 236.4 13.4 81 142-223 274-363 (365)
67 3b85_A Phosphate starvation-in 100.0 2.8E-34 9.6E-39 236.7 -6.3 149 41-221 12-171 (208)
68 4gp7_A Metallophosphoesterase; 100.0 1.8E-31 6.1E-36 213.2 4.5 145 47-209 1-164 (171)
69 1ye8_A Protein THEP1, hypothet 100.0 8.8E-30 3E-34 204.9 9.7 153 57-236 2-172 (178)
70 1e69_A Chromosome segregation 100.0 1.2E-28 4.1E-33 215.4 16.1 90 141-231 213-310 (322)
71 1tq4_A IIGP1, interferon-induc 99.9 1.1E-30 3.8E-35 234.8 -9.9 170 42-221 36-255 (413)
72 2v9p_A Replication protein E1; 99.9 1E-31 3.4E-36 232.8 -18.4 163 28-232 101-264 (305)
73 2pt7_A CAG-ALFA; ATPase, prote 99.9 3E-28 1E-32 213.7 -1.6 146 44-235 160-305 (330)
74 3qkt_A DNA double-strand break 99.9 5.4E-25 1.8E-29 193.6 15.3 80 142-222 243-333 (339)
75 3b9q_A Chloroplast SRP recepto 99.9 3.1E-27 1.1E-31 204.8 -0.7 179 45-236 90-300 (302)
76 2dpy_A FLII, flagellum-specifi 99.9 4.2E-27 1.4E-31 213.5 0.1 180 27-231 130-341 (438)
77 2o5v_A DNA replication and rep 99.9 8.6E-25 3E-29 193.5 14.0 85 143-232 260-354 (359)
78 1z6g_A Guanylate kinase; struc 99.9 3.7E-28 1.3E-32 201.3 -8.1 166 43-216 11-206 (218)
79 2o8b_B DNA mismatch repair pro 99.9 1.2E-25 4E-30 221.5 7.9 165 26-223 748-930 (1022)
80 2obl_A ESCN; ATPase, hydrolase 99.9 4.3E-27 1.5E-31 207.6 -2.3 181 27-231 44-252 (347)
81 3aez_A Pantothenate kinase; tr 99.9 3.2E-28 1.1E-32 211.9 -11.5 176 27-221 42-246 (312)
82 1tf7_A KAIC; homohexamer, hexa 99.9 2.2E-25 7.5E-30 206.7 5.3 169 28-221 257-444 (525)
83 1znw_A Guanylate kinase, GMP k 99.9 3.5E-28 1.2E-32 199.5 -13.0 163 42-218 9-202 (207)
84 2og2_A Putative signal recogni 99.9 7.7E-26 2.6E-30 200.0 1.0 178 46-236 148-357 (359)
85 1cr0_A DNA primase/helicase; R 99.9 1.3E-23 4.6E-28 180.9 10.1 172 43-222 23-237 (296)
86 3thx_A DNA mismatch repair pro 99.9 3.5E-24 1.2E-28 208.9 6.7 155 27-223 630-803 (934)
87 2eyu_A Twitching motility prot 99.9 5.9E-25 2E-29 186.9 -0.4 141 28-218 5-146 (261)
88 1tf7_A KAIC; homohexamer, hexa 99.9 1.7E-26 5.7E-31 214.2 -11.1 167 28-219 12-209 (525)
89 3sop_A Neuronal-specific septi 99.9 3.3E-25 1.1E-29 189.3 -3.2 138 57-205 4-151 (270)
90 3pih_A Uvrabc system protein A 99.9 1.2E-22 4.2E-27 197.4 12.9 105 128-234 445-560 (916)
91 2jeo_A Uridine-cytidine kinase 99.9 3.1E-24 1.1E-28 180.3 0.7 161 40-221 10-180 (245)
92 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 2.2E-22 7.5E-27 157.0 10.2 81 141-222 51-142 (148)
93 1ewq_A DNA mismatch repair pro 99.9 5.8E-23 2E-27 197.1 7.9 145 27-208 549-702 (765)
94 2i3b_A HCR-ntpase, human cance 99.9 5.1E-24 1.7E-28 172.8 -0.0 141 55-224 1-167 (189)
95 3thx_B DNA mismatch repair pro 99.9 1E-22 3.4E-27 198.3 7.9 153 28-213 640-804 (918)
96 2ehv_A Hypothetical protein PH 99.9 2.2E-22 7.7E-27 167.9 8.2 170 28-218 6-206 (251)
97 2ygr_A Uvrabc system protein A 99.9 9.7E-22 3.3E-26 191.2 11.9 103 130-234 504-617 (993)
98 2r6f_A Excinuclease ABC subuni 99.9 9.2E-22 3.2E-26 190.8 11.0 103 130-234 487-600 (972)
99 4a74_A DNA repair and recombin 99.9 1.9E-21 6.6E-26 160.3 9.9 153 51-221 21-201 (231)
100 2vf7_A UVRA2, excinuclease ABC 99.8 2.2E-21 7.7E-26 187.2 11.2 103 130-234 362-475 (842)
101 2w0m_A SSO2452; RECA, SSPF, un 99.8 4.7E-21 1.6E-25 157.8 10.5 164 42-220 9-192 (235)
102 3asz_A Uridine kinase; cytidin 99.8 7.8E-24 2.7E-28 173.3 -9.2 141 52-204 3-161 (211)
103 2qnr_A Septin-2, protein NEDD5 99.8 6.2E-23 2.1E-27 177.7 -7.1 154 32-205 2-168 (301)
104 3jvv_A Twitching mobility prot 99.8 3.9E-21 1.3E-25 169.9 3.2 145 32-219 92-245 (356)
105 1wb9_A DNA mismatch repair pro 99.8 6.3E-21 2.1E-25 183.9 4.6 162 27-222 576-747 (800)
106 1pui_A ENGB, probable GTP-bind 99.8 1E-20 3.5E-25 153.9 4.4 158 28-192 3-195 (210)
107 3kta_B Chromosome segregation 99.8 6.4E-19 2.2E-23 140.7 13.0 93 142-235 59-159 (173)
108 1nlf_A Regulatory protein REPA 99.8 1.9E-19 6.7E-24 153.7 10.0 146 51-207 26-184 (279)
109 2cvh_A DNA repair and recombin 99.8 9.4E-19 3.2E-23 143.2 8.9 150 43-220 7-185 (220)
110 3szr_A Interferon-induced GTP- 99.8 1.4E-21 4.7E-26 184.0 -9.3 175 27-229 9-232 (608)
111 2qag_C Septin-7; cell cycle, c 99.8 1.1E-19 3.9E-24 163.6 1.7 156 27-205 10-178 (418)
112 4ad8_A DNA repair protein RECN 99.7 1.9E-18 6.4E-23 159.8 9.2 77 143-220 392-473 (517)
113 1rj9_A FTSY, signal recognitio 99.7 2E-19 7E-24 155.8 1.4 169 54-236 101-301 (304)
114 1s96_A Guanylate kinase, GMP k 99.7 1.2E-19 4.1E-24 150.3 -1.6 144 49-236 10-162 (219)
115 2ewv_A Twitching motility prot 99.7 4.9E-19 1.7E-23 157.5 2.1 127 44-215 127-254 (372)
116 2gza_A Type IV secretion syste 99.7 3.2E-19 1.1E-23 158.1 -0.6 158 30-235 137-317 (361)
117 1pzn_A RAD51, DNA repair and r 99.7 3.5E-18 1.2E-22 150.7 5.6 155 43-221 118-303 (349)
118 3auy_A DNA double-strand break 99.7 2.4E-16 8.4E-21 139.9 11.8 75 143-218 276-359 (371)
119 1n0w_A DNA repair protein RAD5 99.7 6.5E-16 2.2E-20 128.1 13.5 145 51-220 20-209 (243)
120 1lw7_A Transcriptional regulat 99.7 1.2E-19 4.1E-24 160.9 -11.9 164 45-218 158-342 (365)
121 1zp6_A Hypothetical protein AT 99.6 2.9E-19 9.8E-24 143.6 -9.7 147 51-214 5-169 (191)
122 1w1w_A Structural maintenance 99.6 9.1E-16 3.1E-20 138.7 10.0 73 145-218 331-410 (430)
123 2qag_B Septin-6, protein NEDD5 99.6 1.4E-16 4.7E-21 143.4 1.2 169 28-204 16-219 (427)
124 2bbw_A Adenylate kinase 4, AK4 99.6 1.1E-17 3.9E-22 140.1 -6.6 131 54-193 26-196 (246)
125 2bdt_A BH3686; alpha-beta prot 99.6 2.4E-20 8.4E-25 150.0 -22.4 158 55-233 2-183 (189)
126 3ec2_A DNA replication protein 99.6 2.3E-16 7.8E-21 125.8 0.9 109 49-205 32-144 (180)
127 1udx_A The GTP-binding protein 99.6 3.5E-16 1.2E-20 140.7 1.9 142 45-204 147-309 (416)
128 1htw_A HI0065; nucleotide-bind 99.6 3E-17 1E-21 129.1 -5.8 58 31-90 10-67 (158)
129 2qm8_A GTPase/ATPase; G protei 99.6 7.7E-18 2.6E-22 147.9 -10.5 158 28-192 29-257 (337)
130 3lda_A DNA repair protein RAD5 99.5 7.4E-14 2.5E-18 125.1 12.5 145 51-221 174-364 (400)
131 2kjq_A DNAA-related protein; s 99.5 1.2E-14 4E-19 113.1 5.5 86 54-203 35-124 (149)
132 2rcn_A Probable GTPase ENGC; Y 99.5 6.4E-15 2.2E-19 129.9 3.9 112 44-163 205-329 (358)
133 1p9r_A General secretion pathw 99.5 8.9E-18 3E-22 151.3 -14.7 135 28-170 143-314 (418)
134 1sxj_E Activator 1 40 kDa subu 99.5 3.8E-14 1.3E-18 124.0 8.7 137 57-216 38-187 (354)
135 3c8u_A Fructokinase; YP_612366 99.5 1.2E-16 4E-21 130.7 -7.9 139 52-213 19-168 (208)
136 1nij_A Hypothetical protein YJ 99.5 2.4E-17 8.2E-22 143.6 -13.2 55 147-210 141-195 (318)
137 2oap_1 GSPE-2, type II secreti 99.5 8.9E-17 3.1E-21 148.2 -10.3 159 43-213 248-459 (511)
138 2f1r_A Molybdopterin-guanine d 99.5 1.8E-16 6.1E-21 126.3 -8.4 97 56-169 3-125 (171)
139 1odf_A YGR205W, hypothetical 3 99.5 2.4E-15 8.3E-20 129.3 -1.9 121 53-181 29-168 (290)
140 2yhs_A FTSY, cell division pro 99.5 5.3E-15 1.8E-19 134.9 0.1 178 45-236 283-492 (503)
141 3e70_C DPA, signal recognition 99.4 1.1E-14 3.7E-19 127.3 1.2 168 51-236 125-322 (328)
142 2yv5_A YJEQ protein; hydrolase 99.4 8.4E-15 2.9E-19 126.6 -2.7 110 50-160 160-300 (302)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1.4E-15 4.8E-20 135.7 -7.8 155 51-229 16-208 (392)
144 1ls1_A Signal recognition part 99.4 6.5E-13 2.2E-17 114.4 8.8 130 29-191 77-207 (295)
145 2px0_A Flagellar biosynthesis 99.4 1.2E-12 4.2E-17 112.7 10.1 136 53-223 103-245 (296)
146 1lvg_A Guanylate kinase, GMP k 99.4 9.5E-16 3.3E-20 124.6 -9.9 143 53-219 2-173 (198)
147 1vma_A Cell division protein F 99.4 1.1E-12 3.8E-17 113.5 8.2 99 47-176 96-197 (306)
148 1in4_A RUVB, holliday junction 99.3 1.1E-16 3.9E-21 140.1 -18.1 162 28-213 18-211 (334)
149 3euj_A Chromosome partition pr 99.3 4E-13 1.4E-17 122.7 4.7 71 145-218 377-464 (483)
150 2dr3_A UPF0273 protein PH0284; 99.3 5.3E-11 1.8E-15 98.3 14.1 56 164-219 127-196 (247)
151 2x8a_A Nuclear valosin-contain 99.3 1.2E-15 4.2E-20 130.1 -16.3 137 42-192 33-192 (274)
152 2r6a_A DNAB helicase, replicat 99.2 1.4E-11 5E-16 111.9 8.1 165 43-222 191-401 (454)
153 1u0l_A Probable GTPase ENGC; p 99.2 4.6E-13 1.6E-17 115.6 -2.4 100 50-150 164-294 (301)
154 1sq5_A Pantothenate kinase; P- 99.2 2E-13 6.9E-18 118.2 -5.2 59 27-88 36-115 (308)
155 3lnc_A Guanylate kinase, GMP k 99.1 1.1E-11 3.9E-16 102.4 2.4 175 43-236 15-226 (231)
156 1t9h_A YLOQ, probable GTPase E 99.1 1.8E-12 6E-17 112.2 -3.8 103 50-154 168-302 (307)
157 1oix_A RAS-related protein RAB 99.1 6.7E-11 2.3E-15 94.7 5.6 37 154-192 152-188 (191)
158 2zr9_A Protein RECA, recombina 99.1 9.7E-10 3.3E-14 96.7 11.6 139 51-223 57-233 (349)
159 3nwj_A ATSK2; P loop, shikimat 99.1 1.3E-11 4.3E-16 103.9 -0.7 54 27-80 16-73 (250)
160 2ius_A DNA translocase FTSK; n 99.1 2E-12 6.7E-17 118.8 -6.2 165 47-216 159-361 (512)
161 3k1j_A LON protease, ATP-depen 99.0 4.9E-11 1.7E-15 112.1 2.1 153 32-192 38-227 (604)
162 1qhl_A Protein (cell division 99.0 3.2E-12 1.1E-16 106.1 -5.5 54 28-90 9-62 (227)
163 3kta_A Chromosome segregation 99.0 2.7E-10 9.3E-15 90.3 5.9 109 44-157 14-152 (182)
164 3tr0_A Guanylate kinase, GMP k 99.0 2.1E-10 7.1E-15 92.4 3.3 32 49-80 1-32 (205)
165 1svm_A Large T antigen; AAA+ f 99.0 1.3E-12 4.4E-17 116.1 -10.8 127 43-176 157-312 (377)
166 2e87_A Hypothetical protein PH 98.9 1.9E-09 6.5E-14 94.9 8.3 122 54-205 166-293 (357)
167 1jjv_A Dephospho-COA kinase; P 98.9 6.5E-10 2.2E-14 89.9 4.8 126 57-219 4-132 (206)
168 2f9l_A RAB11B, member RAS onco 98.9 8.7E-10 3E-14 88.5 5.2 34 156-191 130-163 (199)
169 2xau_A PRE-mRNA-splicing facto 98.9 2.2E-09 7.5E-14 103.5 6.9 147 51-213 105-261 (773)
170 3a00_A Guanylate kinase, GMP k 98.8 9.2E-10 3.1E-14 87.9 2.3 30 55-84 1-30 (186)
171 2ce7_A Cell division protein F 98.8 4.1E-09 1.4E-13 96.2 6.8 114 42-208 38-168 (476)
172 2j41_A Guanylate kinase; GMP, 98.8 2.5E-09 8.4E-14 86.1 4.3 35 50-84 1-35 (207)
173 3uie_A Adenylyl-sulfate kinase 98.8 3.8E-10 1.3E-14 91.2 -1.4 53 32-86 3-55 (200)
174 2qtf_A Protein HFLX, GTP-bindi 98.7 3.3E-08 1.1E-12 87.3 9.5 133 54-192 177-350 (364)
175 1fnn_A CDC6P, cell division co 98.7 1.4E-07 4.8E-12 82.6 12.3 127 54-211 41-176 (389)
176 3t34_A Dynamin-related protein 98.7 5.7E-08 2E-12 85.4 9.1 42 43-87 25-68 (360)
177 1kgd_A CASK, peripheral plasma 98.7 7.7E-09 2.6E-13 82.1 2.8 34 54-87 4-38 (180)
178 4a1f_A DNAB helicase, replicat 98.6 8.5E-08 2.9E-12 83.8 9.2 128 43-201 34-163 (338)
179 4eun_A Thermoresistant glucoki 98.6 1.3E-08 4.4E-13 82.1 3.4 38 49-90 23-60 (200)
180 3vaa_A Shikimate kinase, SK; s 98.6 1.5E-08 5.1E-13 81.6 3.6 38 42-79 12-49 (199)
181 4e22_A Cytidylate kinase; P-lo 98.6 7.8E-09 2.7E-13 86.6 1.3 35 53-87 25-62 (252)
182 1w1w_A Structural maintenance 98.6 1.9E-08 6.4E-13 90.6 3.3 49 29-84 7-55 (430)
183 3tqc_A Pantothenate kinase; bi 98.5 2.6E-09 9E-14 92.8 -3.5 133 34-180 66-211 (321)
184 2qby_A CDC6 homolog 1, cell di 98.5 7.2E-08 2.5E-12 84.1 5.2 130 53-210 43-179 (386)
185 1ixz_A ATP-dependent metallopr 98.5 3.5E-09 1.2E-13 88.4 -3.5 57 28-89 25-81 (254)
186 1iy2_A ATP-dependent metallopr 98.5 3.9E-09 1.3E-13 89.4 -3.5 55 30-89 51-105 (278)
187 3tau_A Guanylate kinase, GMP k 98.5 6.8E-08 2.3E-12 78.4 4.1 29 53-81 6-34 (208)
188 2vp4_A Deoxynucleoside kinase; 98.5 4.2E-08 1.5E-12 80.9 2.6 37 49-89 14-50 (230)
189 1rz3_A Hypothetical protein rb 98.5 3.3E-08 1.1E-12 79.8 1.5 38 51-88 18-55 (201)
190 1ega_A Protein (GTP-binding pr 98.5 2.1E-09 7.3E-14 92.5 -6.0 148 55-215 8-170 (301)
191 3hr8_A Protein RECA; alpha and 98.5 2.4E-06 8E-11 75.2 13.4 36 51-86 57-92 (356)
192 3ney_A 55 kDa erythrocyte memb 98.5 6.6E-08 2.3E-12 78.2 3.0 32 49-80 13-44 (197)
193 1zu4_A FTSY; GTPase, signal re 98.4 3.6E-08 1.2E-12 85.7 1.1 43 46-88 96-138 (320)
194 3kl4_A SRP54, signal recogniti 98.4 6.7E-07 2.3E-11 80.6 9.5 109 54-190 96-207 (433)
195 1v5w_A DMC1, meiotic recombina 98.4 1.4E-06 4.8E-11 76.1 10.9 149 51-219 118-308 (343)
196 2dy1_A Elongation factor G; tr 98.4 3.9E-08 1.3E-12 93.4 0.0 133 49-206 3-138 (665)
197 2z43_A DNA repair and recombin 98.4 1.6E-06 5.6E-11 75.1 10.1 149 51-219 103-289 (324)
198 3cr8_A Sulfate adenylyltranfer 98.4 6.9E-08 2.3E-12 89.6 1.1 40 51-90 365-406 (552)
199 3ice_A Transcription terminati 98.4 6.7E-08 2.3E-12 85.6 0.8 52 28-79 133-198 (422)
200 2p67_A LAO/AO transport system 98.4 4E-09 1.4E-13 92.3 -7.1 59 28-87 30-88 (341)
201 1knq_A Gluconate kinase; ALFA/ 98.3 1.4E-07 4.7E-12 74.0 2.4 33 53-89 6-38 (175)
202 3bh0_A DNAB-like replicative h 98.3 8.6E-07 2.9E-11 76.6 7.3 131 43-202 56-189 (315)
203 1kag_A SKI, shikimate kinase I 98.3 2.3E-07 8E-12 72.4 3.0 28 54-81 3-30 (173)
204 1f2t_A RAD50 ABC-ATPase; DNA d 98.3 3.3E-07 1.1E-11 70.7 3.8 31 46-77 15-45 (149)
205 3b9p_A CG5977-PA, isoform A; A 98.3 2.8E-06 9.6E-11 72.0 9.3 101 54-205 53-170 (297)
206 2qt1_A Nicotinamide riboside k 98.3 5E-07 1.7E-11 72.8 3.7 31 50-80 16-46 (207)
207 3lxx_A GTPase IMAP family memb 98.2 1E-05 3.5E-10 66.5 10.9 29 57-85 31-59 (239)
208 2z4s_A Chromosomal replication 98.2 1.3E-06 4.4E-11 79.0 5.5 41 164-204 193-237 (440)
209 1cke_A CK, MSSA, protein (cyti 98.2 2.5E-07 8.6E-12 75.4 0.4 34 55-88 5-41 (227)
210 4eaq_A DTMP kinase, thymidylat 98.1 8.8E-07 3E-11 73.1 3.1 43 44-87 12-57 (229)
211 3qks_A DNA double-strand break 98.1 1.8E-06 6.3E-11 69.8 3.8 30 46-76 15-44 (203)
212 2www_A Methylmalonic aciduria 98.1 9.7E-07 3.3E-11 77.4 2.1 36 53-88 72-107 (349)
213 2pez_A Bifunctional 3'-phospho 98.1 1.1E-06 3.7E-11 69.2 2.1 31 53-84 3-33 (179)
214 3m6a_A ATP-dependent protease 98.0 8.1E-07 2.8E-11 82.4 1.1 57 31-89 86-142 (543)
215 2ffh_A Protein (FFH); SRP54, s 98.0 6.1E-07 2.1E-11 80.7 -0.1 53 31-88 79-131 (425)
216 1f6b_A SAR1; gtpases, N-termin 98.0 1.2E-06 4E-11 70.1 1.5 42 35-77 6-47 (198)
217 3auy_A DNA double-strand break 98.0 5.2E-06 1.8E-10 73.2 5.7 44 29-76 3-46 (371)
218 4ad8_A DNA repair protein RECN 98.0 8.5E-07 2.9E-11 81.7 0.3 34 44-78 50-83 (517)
219 1u94_A RECA protein, recombina 98.0 8.8E-05 3E-09 65.1 12.3 28 52-79 60-87 (356)
220 1m7g_A Adenylylsulfate kinase; 97.9 1.8E-06 6.1E-11 69.9 1.2 35 50-84 20-54 (211)
221 2qag_A Septin-2, protein NEDD5 97.9 8.1E-07 2.8E-11 78.3 -1.3 51 28-85 17-67 (361)
222 1y63_A LMAJ004144AAA protein; 97.9 6.7E-06 2.3E-10 65.1 3.4 32 47-78 2-33 (184)
223 2yvu_A Probable adenylyl-sulfa 97.9 3.5E-06 1.2E-10 66.6 1.5 36 51-86 9-44 (186)
224 2if2_A Dephospho-COA kinase; a 97.8 6.3E-06 2.2E-10 65.9 2.8 21 57-77 3-23 (204)
225 1m2o_B GTP-binding protein SAR 97.8 1.3E-05 4.5E-10 63.4 4.4 33 44-77 13-45 (190)
226 1j8m_F SRP54, signal recogniti 97.8 2.6E-06 8.8E-11 73.1 0.1 53 31-87 77-130 (297)
227 2gj8_A MNME, tRNA modification 97.8 9.5E-06 3.2E-10 63.3 3.3 27 53-79 2-28 (172)
228 2qor_A Guanylate kinase; phosp 97.8 9.8E-06 3.4E-10 65.1 3.3 30 51-80 8-37 (204)
229 2ohf_A Protein OLA1, GTP-bindi 97.8 1.3E-05 4.5E-10 71.3 4.3 40 51-90 18-68 (396)
230 2dhr_A FTSH; AAA+ protein, hex 97.8 5.6E-06 1.9E-10 75.9 1.9 56 29-89 41-96 (499)
231 1mky_A Probable GTP-binding pr 97.8 1.9E-05 6.6E-10 71.1 5.2 35 57-91 182-228 (439)
232 1sxj_C Activator 1 40 kDa subu 97.8 9.1E-07 3.1E-11 76.9 -3.6 51 33-84 23-75 (340)
233 2wji_A Ferrous iron transport 97.7 2E-05 6.9E-10 60.7 4.1 24 57-80 5-28 (165)
234 2zej_A Dardarin, leucine-rich 97.7 1.6E-05 5.6E-10 62.4 3.5 27 57-83 4-30 (184)
235 2ga8_A Hypothetical 39.9 kDa p 97.7 3.9E-06 1.3E-10 73.5 -0.7 38 43-80 10-49 (359)
236 1njg_A DNA polymerase III subu 97.7 0.00024 8.2E-09 56.9 9.9 42 164-206 125-168 (250)
237 1l8q_A Chromosomal replication 97.7 4.5E-05 1.5E-09 65.5 5.2 29 54-82 36-64 (324)
238 2q6t_A DNAB replication FORK h 97.6 0.00018 6.1E-09 64.8 9.4 129 43-201 188-317 (444)
239 3t61_A Gluconokinase; PSI-biol 97.6 2.5E-05 8.6E-10 62.4 3.0 25 55-79 18-42 (202)
240 3h4m_A Proteasome-activating n 97.6 0.00014 4.9E-09 60.9 7.8 28 52-79 48-75 (285)
241 2v1u_A Cell division control p 97.6 0.00013 4.4E-09 63.4 7.3 28 53-80 42-69 (387)
242 2wjg_A FEOB, ferrous iron tran 97.6 3.7E-05 1.3E-09 60.1 3.4 22 57-78 9-30 (188)
243 3cm0_A Adenylate kinase; ATP-b 97.6 2.9E-05 9.9E-10 61.0 2.8 25 53-77 2-26 (186)
244 1q3t_A Cytidylate kinase; nucl 97.6 3.7E-05 1.3E-09 63.2 3.5 27 52-78 13-39 (236)
245 1np6_A Molybdopterin-guanine d 97.6 2.3E-05 7.9E-10 61.9 1.9 27 56-82 7-33 (174)
246 3r20_A Cytidylate kinase; stru 97.5 2.1E-05 7.2E-10 65.1 1.1 24 55-78 9-32 (233)
247 1lv7_A FTSH; alpha/beta domain 97.5 3.4E-05 1.1E-09 64.0 2.4 35 44-80 36-70 (257)
248 4dcu_A GTP-binding protein ENG 97.5 7E-05 2.4E-09 67.7 4.3 57 151-207 88-144 (456)
249 3bgw_A DNAB-like replicative h 97.5 0.00058 2E-08 61.6 10.0 34 44-77 186-219 (444)
250 3kb2_A SPBC2 prophage-derived 97.4 6.9E-05 2.4E-09 57.8 3.3 23 57-79 3-25 (173)
251 1ypw_A Transitional endoplasmi 97.4 4.8E-05 1.6E-09 73.6 2.7 32 50-81 233-264 (806)
252 1qhx_A CPT, protein (chloramph 97.4 9.5E-05 3.3E-09 57.5 3.8 26 55-80 3-28 (178)
253 1xp8_A RECA protein, recombina 97.4 0.002 6.9E-08 56.6 12.3 28 51-78 70-97 (366)
254 4ag6_A VIRB4 ATPase, type IV s 97.4 7.4E-05 2.5E-09 66.1 2.7 35 54-88 34-68 (392)
255 1kht_A Adenylate kinase; phosp 97.4 0.00012 4.1E-09 57.3 3.7 26 54-79 2-27 (192)
256 2p5t_B PEZT; postsegregational 97.3 3.5E-05 1.2E-09 64.1 0.4 30 51-80 28-57 (253)
257 1vht_A Dephospho-COA kinase; s 97.3 0.00011 3.9E-09 59.2 3.1 23 55-77 4-26 (218)
258 3lw7_A Adenylate kinase relate 97.3 0.00014 4.6E-09 55.9 3.3 19 57-75 3-21 (179)
259 2ze6_A Isopentenyl transferase 97.3 0.00012 4.3E-09 60.9 3.2 23 57-79 3-25 (253)
260 2jaq_A Deoxyguanosine kinase; 97.3 0.00014 4.9E-09 57.5 3.4 23 57-79 2-24 (205)
261 1gtv_A TMK, thymidylate kinase 97.3 3.1E-05 1.1E-09 62.1 -0.6 26 57-82 2-27 (214)
262 2rhm_A Putative kinase; P-loop 97.3 0.00011 3.8E-09 57.7 2.7 27 53-79 3-29 (193)
263 3iij_A Coilin-interacting nucl 97.3 9.5E-05 3.3E-09 57.8 2.2 26 53-78 9-34 (180)
264 1via_A Shikimate kinase; struc 97.3 0.00013 4.4E-09 56.8 3.0 23 57-79 6-28 (175)
265 3k53_A Ferrous iron transport 97.3 0.00013 4.3E-09 61.2 3.1 43 174-216 144-190 (271)
266 1ex7_A Guanylate kinase; subst 97.3 0.00014 4.8E-09 58.0 3.2 23 57-79 3-25 (186)
267 3dm5_A SRP54, signal recogniti 97.3 0.0044 1.5E-07 55.8 13.2 28 54-81 99-126 (443)
268 1jal_A YCHF protein; nucleotid 97.2 0.00028 9.6E-09 62.0 4.9 36 55-90 2-48 (363)
269 2v54_A DTMP kinase, thymidylat 97.2 0.00022 7.6E-09 56.6 3.8 26 54-79 3-28 (204)
270 3trf_A Shikimate kinase, SK; a 97.2 0.00022 7.5E-09 55.8 3.7 26 54-79 4-29 (185)
271 1ly1_A Polynucleotide kinase; 97.2 0.0002 6.8E-09 55.5 3.4 22 56-77 3-24 (181)
272 2b8t_A Thymidine kinase; deoxy 97.2 0.00048 1.6E-08 56.5 5.6 52 165-218 89-150 (223)
273 3euj_A Chromosome partition pr 97.1 0.00074 2.5E-08 61.5 6.9 56 31-90 9-64 (483)
274 3cf0_A Transitional endoplasmi 97.1 0.00016 5.5E-09 61.6 2.3 30 50-79 44-73 (301)
275 2plr_A DTMP kinase, probable t 97.1 0.00026 8.9E-09 56.3 3.3 28 54-81 3-30 (213)
276 2c95_A Adenylate kinase 1; tra 97.1 0.00025 8.7E-09 55.8 3.2 27 53-79 7-33 (196)
277 3io5_A Recombination and repai 97.1 0.0029 9.8E-08 54.7 9.9 120 52-205 26-173 (333)
278 2wwf_A Thymidilate kinase, put 97.1 0.00027 9.4E-09 56.4 3.4 26 53-78 8-33 (212)
279 1gvn_B Zeta; postsegregational 97.1 0.00022 7.5E-09 60.6 2.9 27 53-79 31-57 (287)
280 1uf9_A TT1252 protein; P-loop, 97.1 0.00024 8.1E-09 56.3 2.9 23 56-78 9-31 (203)
281 3b1v_A Ferrous iron uptake tra 97.1 0.00028 9.6E-09 59.5 3.5 23 57-79 5-27 (272)
282 1nn5_A Similar to deoxythymidy 97.1 0.0003 1E-08 56.2 3.4 28 52-79 6-33 (215)
283 2ged_A SR-beta, signal recogni 97.1 0.00028 9.5E-09 55.3 3.2 24 56-79 49-72 (193)
284 1xjc_A MOBB protein homolog; s 97.1 0.00016 5.6E-09 56.8 1.8 26 56-81 5-30 (169)
285 1tev_A UMP-CMP kinase; ploop, 97.1 0.0003 1E-08 55.1 3.2 24 55-78 3-26 (196)
286 3llm_A ATP-dependent RNA helic 97.1 0.00022 7.5E-09 58.4 2.4 63 148-212 161-228 (235)
287 3ake_A Cytidylate kinase; CMP 97.1 0.0003 1E-08 55.9 3.1 23 57-79 4-26 (208)
288 4fcw_A Chaperone protein CLPB; 97.0 0.00022 7.7E-09 60.4 2.4 31 56-86 48-78 (311)
289 1q57_A DNA primase/helicase; d 97.0 0.0071 2.4E-07 55.1 12.6 34 45-78 232-265 (503)
290 1nks_A Adenylate kinase; therm 97.0 0.00031 1.1E-08 55.0 3.0 24 57-80 3-26 (194)
291 3cmw_A Protein RECA, recombina 97.0 0.0048 1.6E-07 63.8 12.3 33 52-84 729-761 (1706)
292 2z0h_A DTMP kinase, thymidylat 97.0 0.00036 1.2E-08 54.9 3.4 23 57-79 2-24 (197)
293 1fzq_A ADP-ribosylation factor 97.0 0.00029 9.8E-09 55.0 2.7 22 57-78 18-39 (181)
294 2nzj_A GTP-binding protein REM 97.0 0.00041 1.4E-08 53.1 3.5 23 57-79 6-28 (175)
295 2vli_A Antibiotic resistance p 97.0 0.00028 9.4E-09 55.0 2.5 26 54-79 4-29 (183)
296 3q72_A GTP-binding protein RAD 97.0 0.00032 1.1E-08 53.3 2.7 24 57-80 4-27 (166)
297 1z2a_A RAS-related protein RAB 97.0 0.00038 1.3E-08 52.8 3.1 23 57-79 7-29 (168)
298 3q85_A GTP-binding protein REM 97.0 0.00044 1.5E-08 52.7 3.4 24 57-80 4-27 (169)
299 2erx_A GTP-binding protein DI- 97.0 0.00045 1.5E-08 52.5 3.5 22 57-78 5-26 (172)
300 2dyk_A GTP-binding protein; GT 97.0 0.00041 1.4E-08 52.3 3.2 23 57-79 3-25 (161)
301 3ihw_A Centg3; RAS, centaurin, 97.0 0.00084 2.9E-08 52.5 5.1 28 57-84 22-54 (184)
302 3tw8_B RAS-related protein RAB 97.0 0.00043 1.5E-08 53.1 3.2 23 57-79 11-33 (181)
303 1aky_A Adenylate kinase; ATP:A 96.9 0.00054 1.8E-08 55.3 3.8 26 54-79 3-28 (220)
304 1kao_A RAP2A; GTP-binding prot 96.9 0.00047 1.6E-08 52.1 3.2 22 57-78 5-26 (167)
305 2ce2_X GTPase HRAS; signaling 96.9 0.00039 1.3E-08 52.3 2.7 23 57-79 5-27 (166)
306 2lkc_A Translation initiation 96.9 0.00063 2.2E-08 52.2 3.9 26 54-79 7-32 (178)
307 1z0j_A RAB-22, RAS-related pro 96.9 0.00048 1.6E-08 52.3 3.2 23 57-79 8-30 (170)
308 1u8z_A RAS-related protein RAL 96.9 0.00047 1.6E-08 52.1 3.1 23 57-79 6-28 (168)
309 1z08_A RAS-related protein RAB 96.9 0.00048 1.6E-08 52.4 3.2 22 57-78 8-29 (170)
310 1zd8_A GTP:AMP phosphotransfer 96.9 0.00051 1.7E-08 55.8 3.3 27 53-79 5-31 (227)
311 1ek0_A Protein (GTP-binding pr 96.9 0.00051 1.7E-08 52.1 3.1 23 57-79 5-27 (170)
312 1ky3_A GTP-binding protein YPT 96.9 0.00051 1.8E-08 52.8 3.2 23 57-79 10-32 (182)
313 1svi_A GTP-binding protein YSX 96.9 0.00045 1.5E-08 54.1 2.9 24 56-79 24-47 (195)
314 3lxw_A GTPase IMAP family memb 96.9 0.00054 1.8E-08 56.7 3.5 24 57-80 23-46 (247)
315 1c1y_A RAS-related protein RAP 96.9 0.00052 1.8E-08 52.0 3.1 22 57-78 5-26 (167)
316 3fb4_A Adenylate kinase; psych 96.9 0.00054 1.8E-08 55.0 3.4 22 57-78 2-23 (216)
317 2bwj_A Adenylate kinase 5; pho 96.9 0.00054 1.8E-08 54.0 3.3 28 52-79 9-36 (199)
318 3pqc_A Probable GTP-binding pr 96.9 0.00046 1.6E-08 53.7 2.9 23 57-79 25-47 (195)
319 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.00055 1.9E-08 52.5 3.2 23 57-79 9-31 (177)
320 1moz_A ARL1, ADP-ribosylation 96.9 0.00032 1.1E-08 54.2 1.8 23 55-77 18-40 (183)
321 1g16_A RAS-related protein SEC 96.9 0.00048 1.7E-08 52.3 2.7 23 57-79 5-27 (170)
322 1e6c_A Shikimate kinase; phosp 96.9 0.00054 1.8E-08 52.8 3.0 24 56-79 3-26 (173)
323 2pbr_A DTMP kinase, thymidylat 96.9 0.0006 2.1E-08 53.4 3.3 23 57-79 2-24 (195)
324 2cxx_A Probable GTP-binding pr 96.9 0.00051 1.7E-08 53.4 2.9 23 57-79 3-25 (190)
325 3t1o_A Gliding protein MGLA; G 96.9 0.00058 2E-08 53.2 3.2 24 57-80 16-39 (198)
326 2fn4_A P23, RAS-related protei 96.8 0.00052 1.8E-08 52.7 2.8 22 57-78 11-32 (181)
327 2pt5_A Shikimate kinase, SK; a 96.8 0.00068 2.3E-08 52.0 3.4 23 57-79 2-24 (168)
328 2w58_A DNAI, primosome compone 96.8 0.00059 2E-08 54.2 3.2 27 56-82 55-81 (202)
329 2cdn_A Adenylate kinase; phosp 96.8 0.00078 2.7E-08 53.5 3.8 26 54-79 19-44 (201)
330 1r2q_A RAS-related protein RAB 96.8 0.00062 2.1E-08 51.6 3.1 22 57-78 8-29 (170)
331 2oil_A CATX-8, RAS-related pro 96.8 0.00062 2.1E-08 53.3 3.1 23 57-79 27-49 (193)
332 4dsu_A GTPase KRAS, isoform 2B 96.8 0.00063 2.2E-08 52.7 3.2 23 57-79 6-28 (189)
333 2hxs_A RAB-26, RAS-related pro 96.8 0.00072 2.4E-08 51.9 3.5 23 57-79 8-30 (178)
334 3dl0_A Adenylate kinase; phosp 96.8 0.00066 2.2E-08 54.5 3.4 22 57-78 2-23 (216)
335 1upt_A ARL1, ADP-ribosylation 96.8 0.00065 2.2E-08 51.7 3.1 22 57-78 9-30 (171)
336 3clv_A RAB5 protein, putative; 96.8 0.00065 2.2E-08 53.0 3.2 23 57-79 9-31 (208)
337 1zak_A Adenylate kinase; ATP:A 96.8 0.00058 2E-08 55.2 2.9 26 54-79 4-29 (222)
338 3bc1_A RAS-related protein RAB 96.8 0.00066 2.2E-08 52.7 3.1 22 57-78 13-34 (195)
339 3bos_A Putative DNA replicatio 96.8 0.00082 2.8E-08 54.2 3.7 27 54-80 51-77 (242)
340 1r8s_A ADP-ribosylation factor 96.8 0.0007 2.4E-08 51.2 3.1 21 57-77 2-22 (164)
341 1wf3_A GTP-binding protein; GT 96.8 0.0007 2.4E-08 57.8 3.4 23 57-79 9-31 (301)
342 3iby_A Ferrous iron transport 96.8 0.00063 2.2E-08 56.7 3.1 23 57-79 3-25 (256)
343 3cbq_A GTP-binding protein REM 96.8 0.00056 1.9E-08 54.2 2.6 22 57-78 25-46 (195)
344 1xx6_A Thymidine kinase; NESG, 96.8 0.003 1E-07 50.4 6.9 52 165-218 81-142 (191)
345 1qf9_A UMP/CMP kinase, protein 96.8 0.00066 2.3E-08 53.0 3.0 24 55-78 6-29 (194)
346 1zuh_A Shikimate kinase; alpha 96.8 0.00087 3E-08 51.6 3.6 23 56-78 8-30 (168)
347 3con_A GTPase NRAS; structural 96.8 0.00072 2.5E-08 52.7 3.1 23 57-79 23-45 (190)
348 2iyv_A Shikimate kinase, SK; t 96.8 0.00071 2.4E-08 52.8 3.1 23 56-78 3-25 (184)
349 1z0f_A RAB14, member RAS oncog 96.8 0.00074 2.5E-08 51.7 3.1 23 57-79 17-39 (179)
350 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00073 2.5E-08 56.3 3.3 25 54-78 3-27 (260)
351 2a9k_A RAS-related protein RAL 96.8 0.00075 2.6E-08 52.1 3.1 23 57-79 20-42 (187)
352 1ukz_A Uridylate kinase; trans 96.8 0.00081 2.8E-08 53.4 3.4 24 55-78 15-38 (203)
353 2g6b_A RAS-related protein RAB 96.8 0.00077 2.6E-08 51.8 3.1 23 57-79 12-34 (180)
354 2y8e_A RAB-protein 6, GH09086P 96.7 0.00068 2.3E-08 51.9 2.7 22 57-78 16-37 (179)
355 3cmw_A Protein RECA, recombina 96.7 0.011 3.6E-07 61.3 12.1 27 52-78 380-406 (1706)
356 1ko7_A HPR kinase/phosphatase; 96.7 0.0018 6E-08 55.8 5.5 45 43-88 133-181 (314)
357 2dby_A GTP-binding protein; GD 96.7 0.0007 2.4E-08 59.6 2.9 22 57-78 3-24 (368)
358 2efe_B Small GTP-binding prote 96.7 0.00088 3E-08 51.5 3.2 23 57-79 14-36 (181)
359 3a1s_A Iron(II) transport prot 96.7 0.00092 3.2E-08 55.7 3.5 23 57-79 7-29 (258)
360 2xb4_A Adenylate kinase; ATP-b 96.7 0.00092 3.2E-08 54.3 3.4 23 57-79 2-24 (223)
361 1ksh_A ARF-like protein 2; sma 96.7 0.00093 3.2E-08 51.9 3.3 26 54-79 17-42 (186)
362 1nrj_B SR-beta, signal recogni 96.7 0.00085 2.9E-08 53.6 3.1 23 57-79 14-36 (218)
363 2grj_A Dephospho-COA kinase; T 96.7 0.00095 3.2E-08 53.3 3.4 23 56-78 13-35 (192)
364 2cjw_A GTP-binding protein GEM 96.7 0.00087 3E-08 52.9 3.1 22 57-78 8-29 (192)
365 3iev_A GTP-binding protein ERA 96.7 0.00092 3.2E-08 57.2 3.4 23 57-79 12-34 (308)
366 1vg8_A RAS-related protein RAB 96.7 0.00091 3.1E-08 52.8 3.2 23 57-79 10-32 (207)
367 2bme_A RAB4A, RAS-related prot 96.7 0.00079 2.7E-08 52.1 2.7 23 57-79 12-34 (186)
368 1uj2_A Uridine-cytidine kinase 96.7 0.00094 3.2E-08 55.2 3.4 22 57-78 24-45 (252)
369 3t5d_A Septin-7; GTP-binding p 96.7 0.00077 2.6E-08 56.5 2.8 23 57-79 10-32 (274)
370 1m7b_A RND3/RHOE small GTP-bin 96.7 0.0008 2.7E-08 52.3 2.7 22 57-78 9-30 (184)
371 2bov_A RAla, RAS-related prote 96.7 0.00092 3.2E-08 52.6 3.1 22 57-78 16-37 (206)
372 2gf9_A RAS-related protein RAB 96.7 0.00094 3.2E-08 52.1 3.1 23 57-79 24-46 (189)
373 3kkq_A RAS-related protein M-R 96.7 0.0013 4.4E-08 50.8 3.8 22 57-78 20-41 (183)
374 2xtp_A GTPase IMAP family memb 96.6 0.00094 3.2E-08 55.2 3.1 23 57-79 24-46 (260)
375 3i8s_A Ferrous iron transport 96.6 0.00093 3.2E-08 56.2 3.1 23 57-79 5-27 (274)
376 3tkl_A RAS-related protein RAB 96.6 0.0013 4.5E-08 51.3 3.8 23 57-79 18-40 (196)
377 2il1_A RAB12; G-protein, GDP, 96.6 0.001 3.5E-08 52.3 3.1 23 57-79 28-50 (192)
378 2fg5_A RAB-22B, RAS-related pr 96.6 0.0009 3.1E-08 52.5 2.8 23 57-79 25-47 (192)
379 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.001 3.6E-08 51.2 3.1 22 57-78 7-28 (186)
380 1zbd_A Rabphilin-3A; G protein 96.6 0.0012 4E-08 52.1 3.4 23 57-79 10-32 (203)
381 2gf0_A GTP-binding protein DI- 96.6 0.00092 3.1E-08 52.3 2.8 22 57-78 10-31 (199)
382 2j9r_A Thymidine kinase; TK1, 96.6 0.0035 1.2E-07 51.0 6.2 52 165-218 101-162 (214)
383 2r8r_A Sensor protein; KDPD, P 96.6 0.00046 1.6E-08 56.7 1.0 25 54-78 4-29 (228)
384 3v9p_A DTMP kinase, thymidylat 96.6 0.00099 3.4E-08 54.7 3.0 28 53-80 23-50 (227)
385 4bas_A ADP-ribosylation factor 96.6 0.0011 3.8E-08 51.8 3.2 22 57-78 19-40 (199)
386 1z06_A RAS-related protein RAB 96.6 0.0011 3.9E-08 51.6 3.2 22 57-78 22-43 (189)
387 2a5j_A RAS-related protein RAB 96.6 0.0011 3.8E-08 51.8 3.1 23 57-79 23-45 (191)
388 3cnl_A YLQF, putative uncharac 96.6 0.0012 4E-08 55.4 3.4 30 56-85 100-129 (262)
389 3oes_A GTPase rhebl1; small GT 96.6 0.00096 3.3E-08 52.7 2.7 23 57-79 26-48 (201)
390 2h57_A ADP-ribosylation factor 96.6 0.00082 2.8E-08 52.5 2.3 23 57-79 23-45 (190)
391 3dz8_A RAS-related protein RAB 96.6 0.00099 3.4E-08 52.1 2.7 23 57-79 25-47 (191)
392 1zj6_A ADP-ribosylation factor 96.6 0.0011 3.9E-08 51.5 3.1 22 57-78 18-39 (187)
393 2qu8_A Putative nucleolar GTP- 96.6 0.0012 4.1E-08 53.4 3.3 22 57-78 31-52 (228)
394 3reg_A RHO-like small GTPase; 96.6 0.0012 4E-08 51.8 3.1 23 57-79 25-47 (194)
395 2o52_A RAS-related protein RAB 96.6 0.0011 3.9E-08 52.4 3.1 22 57-78 27-48 (200)
396 1a7j_A Phosphoribulokinase; tr 96.6 0.00059 2E-08 58.0 1.5 26 54-79 4-29 (290)
397 3t5g_A GTP-binding protein RHE 96.6 0.001 3.5E-08 51.3 2.7 21 57-77 8-28 (181)
398 3llu_A RAS-related GTP-binding 96.6 0.0012 4.1E-08 52.0 3.2 24 57-80 22-45 (196)
399 4dhe_A Probable GTP-binding pr 96.6 0.00055 1.9E-08 54.9 1.2 24 56-79 30-53 (223)
400 2f6r_A COA synthase, bifunctio 96.6 0.0011 3.7E-08 56.0 3.0 22 56-77 76-97 (281)
401 1zd9_A ADP-ribosylation factor 96.6 0.0012 4.2E-08 51.5 3.1 22 57-78 24-45 (188)
402 2ew1_A RAS-related protein RAB 96.6 0.001 3.6E-08 53.0 2.7 22 57-78 28-49 (201)
403 3tlx_A Adenylate kinase 2; str 96.6 0.0012 4.2E-08 54.4 3.2 25 54-78 28-52 (243)
404 1jbk_A CLPB protein; beta barr 96.6 0.0016 5.4E-08 50.2 3.7 27 53-79 41-67 (195)
405 2atv_A RERG, RAS-like estrogen 96.5 0.0013 4.4E-08 51.7 3.2 22 57-78 30-51 (196)
406 2h17_A ADP-ribosylation factor 96.5 0.0011 3.6E-08 51.5 2.6 22 57-78 23-44 (181)
407 1x3s_A RAS-related protein RAB 96.5 0.0013 4.4E-08 51.2 3.1 23 57-79 17-39 (195)
408 2f7s_A C25KG, RAS-related prot 96.5 0.0015 5.1E-08 52.1 3.5 24 57-80 27-50 (217)
409 2p5s_A RAS and EF-hand domain 96.5 0.0013 4.5E-08 51.8 3.1 23 57-79 30-52 (199)
410 1e4v_A Adenylate kinase; trans 96.5 0.0012 4.1E-08 53.0 3.0 23 57-79 2-24 (214)
411 1jwy_B Dynamin A GTPase domain 96.5 0.0012 4.1E-08 56.1 3.1 23 57-79 26-48 (315)
412 2wsm_A Hydrogenase expression/ 96.5 0.0011 3.9E-08 53.0 2.8 24 56-79 31-54 (221)
413 2iwr_A Centaurin gamma 1; ANK 96.5 0.00096 3.3E-08 51.3 2.3 22 57-78 9-30 (178)
414 2q3h_A RAS homolog gene family 96.5 0.0015 5.2E-08 51.3 3.4 22 57-78 22-43 (201)
415 3cph_A RAS-related protein SEC 96.5 0.0014 4.7E-08 52.0 3.1 23 57-79 22-44 (213)
416 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0012 4.1E-08 52.2 2.7 23 57-79 10-32 (206)
417 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0014 4.7E-08 59.5 3.4 38 43-81 140-177 (473)
418 4edh_A DTMP kinase, thymidylat 96.5 0.0015 5E-08 53.1 3.3 29 53-81 4-32 (213)
419 3c5c_A RAS-like protein 12; GD 96.5 0.0015 5E-08 51.1 3.2 22 57-78 23-44 (187)
420 3bwd_D RAC-like GTP-binding pr 96.5 0.0017 5.9E-08 49.9 3.5 23 56-78 9-31 (182)
421 2j1l_A RHO-related GTP-binding 96.5 0.0014 4.9E-08 52.4 3.1 22 57-78 36-57 (214)
422 1gwn_A RHO-related GTP-binding 96.5 0.0013 4.3E-08 52.6 2.7 23 57-79 30-52 (205)
423 3be4_A Adenylate kinase; malar 96.5 0.0016 5.3E-08 52.6 3.3 26 54-79 4-29 (217)
424 3lv8_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 53.7 3.4 27 54-80 26-52 (236)
425 2fv8_A H6, RHO-related GTP-bin 96.5 0.0013 4.6E-08 52.2 2.8 23 57-79 27-49 (207)
426 1ltq_A Polynucleotide kinase; 96.5 0.0016 5.4E-08 55.0 3.4 22 56-77 3-24 (301)
427 2g3y_A GTP-binding protein GEM 96.5 0.0018 6.1E-08 52.3 3.5 22 57-78 39-60 (211)
428 2fu5_C RAS-related protein RAB 96.4 0.001 3.6E-08 51.3 1.9 22 57-78 10-31 (183)
429 4tmk_A Protein (thymidylate ki 96.4 0.0019 6.4E-08 52.5 3.4 27 54-80 2-28 (213)
430 2fh5_B SR-beta, signal recogni 96.4 0.0023 7.7E-08 50.9 3.9 23 57-79 9-31 (214)
431 2aka_B Dynamin-1; fusion prote 96.4 0.0015 5.1E-08 54.9 2.8 24 57-80 28-51 (299)
432 2b6h_A ADP-ribosylation factor 96.4 0.0015 5.2E-08 51.3 2.7 23 56-78 30-52 (192)
433 1ak2_A Adenylate kinase isoenz 96.4 0.0022 7.7E-08 52.2 3.8 26 54-79 15-40 (233)
434 3d3q_A TRNA delta(2)-isopenten 96.4 0.0018 6.2E-08 56.3 3.4 24 57-80 9-32 (340)
435 3zvl_A Bifunctional polynucleo 96.4 0.0019 6.5E-08 57.6 3.6 29 51-79 254-282 (416)
436 2gco_A H9, RHO-related GTP-bin 96.4 0.0016 5.3E-08 51.6 2.7 23 57-79 27-49 (201)
437 3def_A T7I23.11 protein; chlor 96.4 0.0017 5.8E-08 54.0 3.1 23 57-79 38-60 (262)
438 1sxj_D Activator 1 41 kDa subu 96.4 0.00062 2.1E-08 58.5 0.4 40 165-205 133-174 (353)
439 3cmu_A Protein RECA, recombina 96.4 0.021 7.2E-07 60.0 11.6 29 52-80 380-408 (2050)
440 1qvr_A CLPB protein; coiled co 96.4 0.004 1.4E-07 60.5 6.1 28 56-83 589-616 (854)
441 1h65_A Chloroplast outer envel 96.3 0.0018 6.2E-08 54.0 3.1 23 57-79 41-63 (270)
442 2atx_A Small GTP binding prote 96.3 0.0017 6E-08 50.7 2.8 22 57-78 20-41 (194)
443 1ypw_A Transitional endoplasmi 96.3 0.00065 2.2E-08 65.7 0.3 33 48-80 504-536 (806)
444 2orv_A Thymidine kinase; TP4A 96.3 0.0084 2.9E-07 49.3 6.9 52 164-218 89-150 (234)
445 2h92_A Cytidylate kinase; ross 96.3 0.0021 7.3E-08 51.5 3.3 25 55-79 3-27 (219)
446 3tmk_A Thymidylate kinase; pho 96.3 0.0023 7.8E-08 52.1 3.4 29 53-81 3-31 (216)
447 4djt_A GTP-binding nuclear pro 96.3 0.00094 3.2E-08 53.4 1.0 23 57-79 13-35 (218)
448 2p65_A Hypothetical protein PF 96.3 0.002 6.8E-08 49.6 2.8 28 53-80 41-68 (187)
449 2hf9_A Probable hydrogenase ni 96.3 0.002 6.9E-08 51.7 2.7 24 56-79 39-62 (226)
450 3crm_A TRNA delta(2)-isopenten 96.2 0.0025 8.5E-08 55.1 3.4 24 56-79 6-29 (323)
451 3ld9_A DTMP kinase, thymidylat 96.2 0.0025 8.6E-08 52.1 3.3 28 53-80 19-46 (223)
452 2ocp_A DGK, deoxyguanosine kin 96.2 0.0022 7.5E-08 52.5 2.9 26 55-80 2-27 (241)
453 3exa_A TRNA delta(2)-isopenten 96.2 0.0025 8.4E-08 54.9 3.3 25 55-79 3-27 (322)
454 2hup_A RAS-related protein RAB 96.2 0.0022 7.4E-08 50.8 2.8 23 57-79 31-53 (201)
455 3q3j_B RHO-related GTP-binding 96.2 0.0025 8.6E-08 51.1 3.1 22 57-78 29-50 (214)
456 2qmh_A HPR kinase/phosphorylas 96.2 0.0037 1.3E-07 50.3 4.0 35 43-78 23-57 (205)
457 3cpj_B GTP-binding protein YPT 96.2 0.0026 8.9E-08 51.1 3.2 23 57-79 15-37 (223)
458 3a8t_A Adenylate isopentenyltr 96.2 0.0026 8.8E-08 55.3 3.3 31 54-87 39-69 (339)
459 2x77_A ADP-ribosylation factor 96.2 0.0016 5.4E-08 50.7 1.8 22 56-77 23-44 (189)
460 4gzl_A RAS-related C3 botulinu 96.2 0.0023 7.9E-08 50.8 2.7 21 57-77 32-52 (204)
461 2i1q_A DNA repair and recombin 96.2 0.0026 9E-08 54.4 3.3 27 51-77 94-120 (322)
462 2yc2_C IFT27, small RAB-relate 96.2 0.0011 3.6E-08 52.3 0.6 22 57-78 22-43 (208)
463 2r62_A Cell division protease 96.1 0.00068 2.3E-08 56.2 -0.6 33 45-79 36-68 (268)
464 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0035 1.2E-07 51.4 3.7 27 53-79 37-63 (262)
465 4hlc_A DTMP kinase, thymidylat 96.1 0.0033 1.1E-07 50.6 3.2 26 55-80 2-27 (205)
466 1p5z_B DCK, deoxycytidine kina 96.1 0.0019 6.4E-08 53.7 1.7 28 53-80 22-49 (263)
467 2j0v_A RAC-like GTP-binding pr 96.1 0.0029 1E-07 50.1 2.7 22 57-78 11-32 (212)
468 3umf_A Adenylate kinase; rossm 96.1 0.0027 9.3E-08 51.7 2.6 28 51-78 25-52 (217)
469 2zts_A Putative uncharacterize 96.0 0.0052 1.8E-07 49.8 4.2 25 52-76 27-51 (251)
470 3foz_A TRNA delta(2)-isopenten 96.0 0.0038 1.3E-07 53.6 3.4 25 55-79 10-34 (316)
471 3cmu_A Protein RECA, recombina 96.0 0.041 1.4E-06 57.9 11.5 27 52-78 1424-1450(2050)
472 2v3c_C SRP54, signal recogniti 96.0 0.002 6.8E-08 57.9 1.6 32 50-81 92-125 (432)
473 3tqf_A HPR(Ser) kinase; transf 96.0 0.0056 1.9E-07 48.2 4.0 34 43-77 5-38 (181)
474 3n70_A Transport activator; si 95.9 0.0051 1.7E-07 46.3 3.5 29 53-81 22-50 (145)
475 2orw_A Thymidine kinase; TMTK, 95.9 0.0047 1.6E-07 48.8 3.4 54 164-219 75-138 (184)
476 1puj_A YLQF, conserved hypothe 95.9 0.0053 1.8E-07 51.9 3.6 25 57-81 122-146 (282)
477 1wxq_A GTP-binding protein; st 95.8 0.0044 1.5E-07 55.0 3.1 23 57-79 2-24 (397)
478 2hjg_A GTP-binding protein ENG 95.8 0.0041 1.4E-07 55.7 2.9 23 57-79 5-27 (436)
479 3r7w_A Gtpase1, GTP-binding pr 95.8 0.0064 2.2E-07 51.8 3.9 24 56-79 4-27 (307)
480 2chg_A Replication factor C sm 95.8 0.0052 1.8E-07 48.4 3.1 41 164-205 101-143 (226)
481 3sr0_A Adenylate kinase; phosp 95.8 0.0058 2E-07 49.2 3.4 23 57-79 2-24 (206)
482 3gj0_A GTP-binding nuclear pro 95.7 0.0033 1.1E-07 50.3 1.8 38 154-191 165-207 (221)
483 3p32_A Probable GTPase RV1496/ 95.7 0.0054 1.9E-07 53.4 3.2 26 55-80 79-104 (355)
484 3l0i_B RAS-related protein RAB 95.7 0.0011 3.8E-08 52.2 -1.3 23 57-79 35-57 (199)
485 3th5_A RAS-related C3 botulinu 94.6 0.0019 6.5E-08 51.0 0.0 23 56-78 31-53 (204)
486 2x2e_A Dynamin-1; nitration, h 95.6 0.004 1.4E-07 54.1 2.0 23 57-79 33-55 (353)
487 3syl_A Protein CBBX; photosynt 95.6 0.0072 2.5E-07 50.9 3.4 26 54-79 66-91 (309)
488 1lnz_A SPO0B-associated GTP-bi 95.6 0.0076 2.6E-07 52.4 3.6 32 47-78 150-181 (342)
489 3pvs_A Replication-associated 95.5 0.0044 1.5E-07 55.8 2.0 36 46-81 39-76 (447)
490 3eph_A TRNA isopentenyltransfe 95.5 0.0064 2.2E-07 54.1 2.9 24 56-79 3-26 (409)
491 3ec1_A YQEH GTPase; atnos1, at 95.5 0.0071 2.4E-07 53.1 3.1 25 54-78 161-185 (369)
492 2qgz_A Helicase loader, putati 95.5 0.0094 3.2E-07 50.9 3.8 26 55-80 152-177 (308)
493 1d2n_A N-ethylmaleimide-sensit 95.4 0.008 2.8E-07 49.9 3.1 25 54-78 63-87 (272)
494 3geh_A MNME, tRNA modification 95.4 0.007 2.4E-07 54.8 2.8 25 54-78 223-247 (462)
495 2qpt_A EH domain-containing pr 95.4 0.0072 2.4E-07 55.9 2.8 24 56-79 66-89 (550)
496 1ofh_A ATP-dependent HSL prote 95.4 0.0095 3.3E-07 49.9 3.4 25 55-79 50-74 (310)
497 3sjy_A Translation initiation 95.4 0.0095 3.2E-07 52.7 3.5 24 57-80 10-33 (403)
498 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.01 3.5E-07 50.9 3.5 27 53-79 43-69 (322)
499 3gmt_A Adenylate kinase; ssgci 95.3 0.011 3.7E-07 48.5 3.4 23 56-78 9-31 (230)
500 3hws_A ATP-dependent CLP prote 95.3 0.01 3.5E-07 51.6 3.4 26 54-79 50-75 (363)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.7e-55 Score=377.82 Aligned_cols=206 Identities=27% Similarity=0.424 Sum_probs=173.2
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------e
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------V 92 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~ 92 (239)
+++|+++||+++|+++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. .
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 358999999999965556999999999999999999999999999999999999999999998773 2
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
.++|++|++...+. ..++.+++.. ...... .+++.++++.+++. ...++++.+|||||||||+|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 49999998632222 3455544431 111222 34678899999996 4678899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
++|||||||+|||+.++..+++.+++ .+.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 233 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 233 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhc
Confidence 99999999999999999888776653 3679999999999999999999999999997 6799887643
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.1e-54 Score=384.38 Aligned_cols=205 Identities=20% Similarity=0.283 Sum_probs=172.0
Q ss_pred CCCeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------
Q 026376 25 GPPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------- 91 (239)
.+++|+++||++.|+++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45689999999999532 35899999999999999999999999999999999999999999998763
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
..++|+||++.. ....++.+++.. ..... ..+++.++|+.+|+.+ ..++++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~~l--~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHFNL--LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSCCC--CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCcc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHH
Confidence 259999998742 233455444431 11122 2356788999999974 5788999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|+.+|++|||||||++||+.++..+++.|++. +.|||+||||++++.++|||+++|++|+++ ..|+++++.
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~ 252 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF 252 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999999888777543 679999999999999999999999999997 689887764
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=9e-55 Score=365.70 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=165.2
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 91 (239)
+|+++||+++|+++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 58999999999632 35899999999999999999999999999999999999999999998773
Q ss_pred --eEEEEEeeccCCCCCCCCcHHHHHHH--hCC---CCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFP---GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
..++|++|++.. ....++.+++.. ... ... .+++.++++.+++.+...++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFNL--IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCCC--CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCcc--CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 149999998743 223345444421 111 111 3457788999999754457899999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
||+.+|++|||||||++||+.++..+++.+++. +.|||+||||++.+ .+||++++|++|+++ ..++.+++.
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~-~~~~~~~~~ 233 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE-REEKLRGFD 233 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEECC---
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEcChhhhc
Confidence 999999999999999999999999888777543 67999999999965 689999999999997 567776654
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.1e-54 Score=367.12 Aligned_cols=203 Identities=22% Similarity=0.260 Sum_probs=170.5
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~ 93 (239)
++|+++||+++|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..
T Consensus 23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4799999999994 557999999999999999999999999999999999999999999998763 14
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
++|++|++.. ....++.+++.. ...... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus 102 i~~v~Q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 102 VGMVFQRFNL--FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-KAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp EEEECSSCCC--CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCcC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 8999998642 222344444321 111222 346788999999964 567899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
++|||||||++||+.++..+.+.+++. +.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 248 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII-EEGKPEDLFD 248 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999888877543 679999999999999999999999999997 5788887643
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-54 Score=366.39 Aligned_cols=202 Identities=22% Similarity=0.304 Sum_probs=169.5
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 91 (239)
++|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4799999999994 567999999999999999999999999999999999999999999988762
Q ss_pred ---------eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCccc-ccCCCCCCChHHHH
Q 026376 92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNL-ALQPMYTLSGGQKS 154 (239)
Q Consensus 92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkq 154 (239)
..++|++|++.. ....++.+++.. ...... .+++.++++.+++.+ . .++++.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNL--WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCC--CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGGSCHHHHH
T ss_pred ChhhHHHHhcceEEEecCccc--CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhcCCcccCCHHHHH
Confidence 138999998632 222344444321 111222 346788999999974 4 67889999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
||+|||||+.+|++|||||||+|||+.++..+.+.+++ .+.|||+||||++++..+||++++|++|+++ ..|++++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQ 239 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999999999999999988877654 3679999999999999999999999999997 5788877
Q ss_pred HH
Q 026376 232 YK 233 (239)
Q Consensus 232 ~~ 233 (239)
+.
T Consensus 240 ~~ 241 (262)
T 1b0u_A 240 VF 241 (262)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.7e-54 Score=380.77 Aligned_cols=202 Identities=25% Similarity=0.347 Sum_probs=172.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~ 94 (239)
+|+++||+++|+ +..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..+
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 699999999994 567999999999999999999999999999999999999999999998763 249
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCC--C----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFP--G----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
+|+||++. +....++.+++..... . ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 83 g~vfQ~~~--l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRValArAL~~~P~l 159 (359)
T 3fvq_A 83 GYLVQEGV--LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-LAGRYPHELSGGQQQRAALARALAPDPEL 159 (359)
T ss_dssp EEECTTCC--CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCCCc--CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999864 3334466666543211 1 12356889999999974 67899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||||++||+..+..+.+.+. +.+.|||+||||++++..+||||++|++|+++ ..|+++++..
T Consensus 160 LLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~ 228 (359)
T 3fvq_A 160 ILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYR 228 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHh
Confidence 99999999999999888766443 44779999999999999999999999999997 6789888654
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.4e-54 Score=367.62 Aligned_cols=202 Identities=25% Similarity=0.355 Sum_probs=172.6
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
++|+++|+++.|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 10 ~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred ceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5899999999994 567999999999999999999999999999999999999999999998874 2489
Q ss_pred EEeeccCCCCCCCCcHHHHHHHh---C-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc------C
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRC---F-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK------K 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~------~ 165 (239)
|++|++... +..++.+++... . .....+++.++++.+++.+ ..++++.+|||||||||+|||||+. +
T Consensus 89 ~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 89 VMRQYSELA--FPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EECSCCCCC--SCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEecCCccC--CCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 999986432 234555554321 1 1233567889999999974 5678899999999999999999999 9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~---~-~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|++|||||||+|||+.++..+++.+++. + .|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~ 236 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVL 236 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHC
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 9999999999999999999888877543 3 49999999999999999999999999997 678888763
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.8e-54 Score=364.11 Aligned_cols=204 Identities=21% Similarity=0.274 Sum_probs=170.8
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA 95 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~ 95 (239)
.++|+++||+++|+ +..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 13 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 45799999999994 567999999999999999999999999999999999999999999998763 2499
Q ss_pred EEeeccCCCCCCCCcHHHHHHH---hCCCCc---HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMR---CFPGVP---EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|++|++... ...++.+++.. ...... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 92 ~v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 92 YLPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEcCCCCCC--CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999986432 22344443321 111111 246788999999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||||||++||+.++..+.+.|.+ .+.|||++|||++++..+||++++|++|+++ +.|+++++.+
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 235 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKE 235 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHH
Confidence 99999999999999988877754 3679999999999999999999999999997 5788887754
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=6.5e-54 Score=358.04 Aligned_cols=196 Identities=22% Similarity=0.319 Sum_probs=163.4
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 91 (239)
++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4799999999995 467999999999999999999999999999999999999999999998762
Q ss_pred eEEEEEeeccCCCCCCCCcHHHHHHH---hCCC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376 92 VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 92 ~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
..++|++|++... ...++.+++.. .... ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus 82 ~~i~~v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 82 RKLGFVFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHEEEECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcEEEEecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 2499999986422 22344443321 1111 12346788999999974 56788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 228 (239)
|++|||||||++||+.++..+.+.+++. +.|||+||||++++ .+||++++|++|+++ +.|+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~-~~g~ 222 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVV-GEIT 222 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEee
Confidence 9999999999999999999888777543 67999999999988 799999999999996 4553
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.6e-53 Score=376.65 Aligned_cols=206 Identities=27% Similarity=0.365 Sum_probs=173.2
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEE
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIA 95 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~ 95 (239)
+.++|+++|++++|+++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 5678999999999933456899999999999999999999999999999999999999999998763 3599
Q ss_pred EEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
|++|++... ...++.+++.. ...... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 91 ~v~Q~~~l~--~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 91 LVFQNYALF--QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-YANRFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp EECGGGCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEecCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999986432 23344444321 111111 356888999999974 678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 170 LLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 170 llDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||||||++||+..+..+.+.|++ .+.|||+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~ 235 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE-QFGTPEEVYE 235 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999888777654 3679999999999999999999999999997 5788887654
No 11
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1e-53 Score=380.28 Aligned_cols=202 Identities=23% Similarity=0.316 Sum_probs=171.9
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
+|+++||+++|+ +..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+|
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999994 567999999999999999999999999999999999999999999998774 3599999
Q ss_pred eccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++.. ....++.+++.. ...... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~l--~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 82 QSYAL--YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp TTCCC--CTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCCcC--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99743 333455544421 111222 356888999999974 678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||++||+..+..+.+.|++ .+.|+|+||||++++..+||||++|++|+++ ..|+++++.+
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~~l~~ 223 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH 223 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence 99999999998888776654 3779999999999999999999999999997 5788887643
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-53 Score=360.09 Aligned_cols=203 Identities=19% Similarity=0.246 Sum_probs=169.1
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------------E
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------R 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~ 93 (239)
.++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.. .
T Consensus 4 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 35899999999995 4679999999999999999999999999999999999999999999987631 3
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHh-CC--CC--cHHHHHHHHHhcC-CCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRC-FP--GV--PEQKLRAHLGSFG-VTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ 167 (239)
++|++|++.. ....+..+++... .. .. ..+.+.++++.++ +.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 83 i~~v~q~~~l--~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 83 IALVPEGRRI--FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-RLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EEEECSSCCC--CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-TTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCCcc--CCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-HhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999998642 2233555554321 11 11 1345677888884 853 5678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 168 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 168 llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+|||||||++||+.++..+++.+++. +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 227 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELL 227 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 99999999999999999888877543 569999999999999999999999999997 568877764
No 13
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.4e-54 Score=369.88 Aligned_cols=205 Identities=22% Similarity=0.329 Sum_probs=170.7
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 91 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 91 (239)
..++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 18 ~~~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 455899999999995 467999999999999999999999999999999999999999999998762
Q ss_pred eEEEEEeeccCCCCCCCCcHHHHHHHhC-------CCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 92 VRIAVFSQHHVDGLDLSSNPLLYMMRCF-------PGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 92 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
..++|++|++...+....++.+++.... ... ..+++.++++.+++.+ ..++++.+|||||||||+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA-KAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHH
Confidence 2489999986432322235555543210 011 1346788999999964 5678999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEE--EEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGI--LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~ti--i~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
|+.+|++|||||||+|||+.++..+++.|++. +.|| |+||||++++..+||++++|++|+++ +.|+++++
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999999999888877543 6789 99999999999999999999999997 57887765
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.6e-54 Score=365.92 Aligned_cols=201 Identities=19% Similarity=0.251 Sum_probs=169.2
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 93 (239)
.++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 34799999999994 567999999999999999999999999999999999999999999998763 14
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHh--C--CC-----------C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRC--F--PG-----------V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 154 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-----------~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 154 (239)
++|++|++.. ....++.+++... . .. . ..+++.++++.+++.+ ..++++.+|||||||
T Consensus 84 i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 84 IVRTFQTPQP--LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMK 160 (257)
T ss_dssp EEECCCCCGG--GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHH
T ss_pred EEEEccCCcc--CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-hhCCCchhCCHHHHH
Confidence 9999998632 2223444444321 1 01 1 1346788999999964 568899999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
||+|||||+.+|++|||||||+|||+.++..+++.+++. +.|||+||||++++..+||++++|++|+++ +.|++++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999999999999999999999888877543 679999999999999999999999999997 5688777
No 15
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8e-53 Score=359.92 Aligned_cols=204 Identities=25% Similarity=0.420 Sum_probs=171.4
Q ss_pred eEEEEeeEEEcC-CC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEE
Q 026376 28 IISFSDASFGYP-GG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~-~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~ 95 (239)
+|+++|++++|+ ++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 689999999995 23 46999999999999999999999999999999999999999999999873 2499
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhC----C-CCcHHHHHHHHHhcCCC--cccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCF----P-GVPEQKLRAHLGSFGVT--GNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
|++|++...+ ...+..+++.... . ....+++.++++.+++. + ..++++.+|||||||||+|||||+.+|++
T Consensus 82 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 82 IAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDS-FKDRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHH-HTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcc-cccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999852111 2235555543211 1 12346788999999996 4 46788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||||||++||+.++..+.+.+++. +.|||+||||++++..+||++++|++|+++ ..|+++++..
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 227 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFLE 227 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999888877543 679999999999999999999999999997 5788877654
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-52 Score=371.72 Aligned_cols=202 Identities=21% Similarity=0.280 Sum_probs=172.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
+|+++|++++|+ +..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 589999999994 567999999999999999999999999999999999999999999998763 2599999
Q ss_pred eccCCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++.. ....++.+++.... .... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 82 QNYAL--YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-LLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp SSCCC--CTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 98643 23345655554221 1111 346889999999974 578899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||++||+..+..+.+.+++ .+.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~ 223 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV-QYGTPDEVYD 223 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999888777654 3679999999999999999999999999997 5788888654
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-52 Score=371.54 Aligned_cols=202 Identities=25% Similarity=0.309 Sum_probs=170.9
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 589999999994 567999999999999999999999999999999999999999999998763 2599999
Q ss_pred eccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++... ...++.+++.. ..... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 82 QNWALY--PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp TTCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 986432 23344444321 11111 1356788999999975 568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||++||+..+..+.+.|++ .+.|+|+||||++++..+||++++|++|+++ ..|+++++..
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~~~~ 223 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL-QVGTPDEVYY 223 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999888777654 3679999999999999999999999999997 5688887654
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.1e-53 Score=372.58 Aligned_cols=202 Identities=24% Similarity=0.299 Sum_probs=171.3
Q ss_pred eEEEEeeEEEcCCCCc--eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376 28 IISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 91 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~--~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 91 (239)
+|+++|++++|+ +.. +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 689999999994 456 999999999999999999999999999999999999999999988762
Q ss_pred eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376 92 VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 92 ~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
..++|++|++.. ....++.+++... ..... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus 82 r~ig~v~Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 82 RKIGMVFQTWAL--YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp SCEEEEETTSCC--CTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 248999998643 2334555555321 11112 356788999999974 67889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++|||||||++||+..+..+.+.|++ .+.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~ 230 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLYD 230 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999888777654 3679999999999999999999999999997 5688887653
No 19
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9.2e-53 Score=357.05 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=166.9
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 107 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 107 (239)
+|+++|++++|+++..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+. ..++|++|++... .
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~~~--~ 79 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFSSP--F 79 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCCCS--S
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCccC--C
Confidence 79999999999524679999999999999999999999999999999999999999999843 4699999986432 2
Q ss_pred CCcHHHHHHHhC----C-----C-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376 108 SSNPLLYMMRCF----P-----G-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177 (239)
Q Consensus 108 ~~~~~~~~~~~~----~-----~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~ 177 (239)
..++.+++.... . . ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 158 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158 (253)
T ss_dssp CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 335555443210 0 1 11356788999999974 56788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 178 LDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 178 LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+ + +.|+++++
T Consensus 159 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI 215 (253)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence 9999999888877543 6799999999999999999999999999 5 56877765
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-52 Score=370.77 Aligned_cols=200 Identities=26% Similarity=0.290 Sum_probs=169.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------EEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~~~~~~ 98 (239)
||+++|++++|+ +. +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.. .++|++
T Consensus 1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 589999999995 45 9999999999999999999999999999999999999999999988742 489999
Q ss_pred eccCCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376 99 QHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt 175 (239)
|++... ...++.+++.. .......+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~~l~--~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 79 QNYSLF--PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp TTCCCC--TTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 986432 23344444321 111112267889999999974 568899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 176 NHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 176 ~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
++||+..+..+.+.|++ .+.|+|+||||++++..+||++++|++|++. ..|+++++.
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~ 216 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIF 216 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999888777654 3679999999999999999999999999997 568888764
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.3e-52 Score=370.89 Aligned_cols=202 Identities=24% Similarity=0.316 Sum_probs=170.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------e
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~ 92 (239)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 589999999994 567999999999999999999999999999999999999999999988763 2
Q ss_pred EEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 93 RIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
.++|++|++.. ....++.+++.. ...... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 82 DIAMVFQSYAL--YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SEEEECSCCCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 48999998643 223344444321 111111 346788999999974 578899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
++|||||||++||+..+..+.+.|++ .+.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~ 229 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVYD 229 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHh
Confidence 99999999999999999888777654 3679999999999999999999999999997 5788887654
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-52 Score=352.68 Aligned_cols=199 Identities=25% Similarity=0.331 Sum_probs=167.5
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
||+++|++++|+ + +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.+++. ..++|++
T Consensus 1 ml~~~~l~~~y~-~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLG-N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEET-T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeC-C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 478999999994 3 59999999999 999999999999999999999999999999998763 2589999
Q ss_pred eccCCCCCCCCcHHHHHHHhCC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 99 QHHVDGLDLSSNPLLYMMRCFP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
|++.. ....+..+++..... . ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 77 q~~~l--~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 77 QDYAL--FPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSCCC--CTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred CCCcc--CCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 98632 223355555432111 1 12356788999999974 56788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 175 SNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 175 t~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|+|||+.++..+++.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 216 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELFS 216 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999888877543 679999999999999999999999999997 5788887643
No 23
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.7e-52 Score=371.01 Aligned_cols=202 Identities=21% Similarity=0.293 Sum_probs=169.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~ 98 (239)
+|+++|++++|+ +..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|+|
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 599999999994 567999999999999999999999999999999999999999999998763 2599999
Q ss_pred eccCCCCCCCCcHHHHHHHhCC--CCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 99 QHHVDGLDLSSNPLLYMMRCFP--GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 99 q~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
|++.. ....++.+++..... ... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 90 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 90 QSYAV--WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 98642 233456665542211 112 346788999999974 678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|||++||+..+..+.+.|++ .+.|+|+||||++++..+||++++|++|+++ ..|+++++..
T Consensus 167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~ 231 (372)
T 1v43_A 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVYL 231 (372)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999888777654 3679999999999999999999999999997 5688887754
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5e-52 Score=351.42 Aligned_cols=201 Identities=24% Similarity=0.423 Sum_probs=166.7
Q ss_pred eEEEEeeEEEcC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 28 IISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 28 ~l~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
-++++||+++|+ ++..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 489999999994 3457999999999999999999999999999999999999999999998763 2499
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++.. + ..+..+++.........+++.++++.+++.+.. .++++.+|||||||||+|||||+.+
T Consensus 87 ~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 87 VVLQDNVL-L--NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EECSSCCC-T--TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCcc-c--cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99998642 2 236666654322223456677788887775321 2345689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|++|||||||++||+.++..+++.+++. +.|||+||||++.+. .||++++|++|+++ +.|+++++.
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999988877654 679999999999986 49999999999997 578877764
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.3e-52 Score=360.23 Aligned_cols=203 Identities=26% Similarity=0.367 Sum_probs=171.0
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
..|+++||+|+|+++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 36999999999975667999999999999999999999999999999999999999999999874 2599
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++.. +..+..+++.........+++.++++.+++.+. ...+.+.+|||||||||+|||||+.+
T Consensus 132 ~v~Q~~~l---f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 132 VVPQDTVL---FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EECSSCCC---CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEecCCcc---CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 99998742 234666666533323445667777777666432 22345679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|+||||||||++||+.+...+.+.|.+. +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv-~~G~~~el~~ 277 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIV-ERGRHEALLS 277 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999998888654 5799999999999986 9999999999997 6799888754
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4.6e-52 Score=355.35 Aligned_cols=205 Identities=21% Similarity=0.362 Sum_probs=166.3
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCce----------
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV---------- 92 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~---------- 92 (239)
..++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++..
T Consensus 17 ~~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp ---CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 345899999999994 56799999999999999999999999999999999999 47899999987631
Q ss_pred --EEEEEeeccCCCCCCCCcHHHHHHH---------hCCCCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHH
Q 026376 93 --RIAVFSQHHVDGLDLSSNPLLYMMR---------CFPGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRV 156 (239)
Q Consensus 93 --~~~~~~q~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv 156 (239)
.++|++|++.... ..+...++.. ...... .+++.++++.+++.....++++. +|||||||||
T Consensus 96 ~~~i~~v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 173 (267)
T ss_dssp HHTEEEECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred hCCEEEEccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 3899999864322 2233222210 111111 24678899999996445677876 5999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChhHH
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
+|||||+.+|++|||||||++||+.++..+++.+++. +.|||+||||++++..+ ||++++|++|+++ +.|+++++
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 9999999999999999999999999999999988764 46999999999999886 9999999999997 57888776
Q ss_pred H
Q 026376 233 K 233 (239)
Q Consensus 233 ~ 233 (239)
.
T Consensus 253 ~ 253 (267)
T 2zu0_C 253 K 253 (267)
T ss_dssp H
T ss_pred h
Confidence 4
No 27
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.1e-52 Score=355.46 Aligned_cols=200 Identities=19% Similarity=0.320 Sum_probs=171.4
Q ss_pred eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEE-
Q 026376 28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIA- 95 (239)
Q Consensus 28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~- 95 (239)
||+++|++++|+++ +.+|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 58999999999531 569999999999 9999999999999999999999999 99999998873 2589
Q ss_pred EEeeccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE 173 (239)
|++|++.. ..+..+++.. .......+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~v~Q~~~l----~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 79 NLPEAYEI----GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp CCGGGSCT----TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EeCCCCcc----CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99998743 3344444321 11134467789999999997235678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcC-eEEEEeCCeEEeeCCChhHHHH
Q 026376 174 PSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE-ELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
||++||+.++..+.+.+++...|||+||||++++..+|| ++++|++|+++ ..|+++++.+
T Consensus 155 Pts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~~ 215 (263)
T 2pjz_A 155 PFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELLE 215 (263)
T ss_dssp TTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHHh
Confidence 999999999999999998875599999999999999999 99999999997 6788888753
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-52 Score=351.12 Aligned_cols=202 Identities=22% Similarity=0.355 Sum_probs=166.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~ 96 (239)
||+++|++++|+++..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..++|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 4899999999954457999999999999999999999999999999999999999999998763 24899
Q ss_pred EeeccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~ 165 (239)
++|++.. + ..+..+++... ......+++.++++.+++.+... ++++.+|||||||||+|||||+.+
T Consensus 81 v~q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 81 VSQDSAI-M--AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp ECCSSCC-C--CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EcCCCcc-c--cccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 9998642 2 23566655322 12234567888888888864321 235679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++|||||||++||+.++..+++.+.+. +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999888877766543 679999999999886 59999999999996 6788887654
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.8e-51 Score=350.34 Aligned_cols=202 Identities=24% Similarity=0.398 Sum_probs=165.3
Q ss_pred CeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 27 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
.+|+++||+++|++ ...+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 47999999999964 156999999999999999999999999999999999999999999998873 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhCCCCcH-HH---------HHHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHH
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QK---------LRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~lara 161 (239)
++|++|++.. + ..+..+++......... .+ +.++++.+ ++.. ..++++.+|||||||||+||||
T Consensus 95 i~~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 95 VAAVGQEPLL-F--GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT-EVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EEEECSSCCC-C--SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGS-BCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCcc-c--cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhh-hhcCCcCCCCHHHHHHHHHHHH
Confidence 9999998742 2 23666665432111111 11 23456666 5643 4567889999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|+.+|++|||||||++||+.++..+++.|.+. +.|||+||||++++.. ||++++|++|+++ ..|+++++..
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 245 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC-EQGTHLQLME 245 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999988764 4699999999999875 9999999999997 5788877643
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.9e-52 Score=350.79 Aligned_cols=200 Identities=21% Similarity=0.299 Sum_probs=160.7
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCce------------E
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV------------R 93 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~------------~ 93 (239)
+|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++.. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 699999999995 46799999999999999999999999999999999998 88999999987632 2
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHH-----hCCCC----cHHHHHHHHHhcCCCcccccCCCCC-CChHHHHHHHHHHHhc
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMR-----CFPGV----PEQKLRAHLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITF 163 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGqkqrv~laral~ 163 (239)
++|++|++.... ..+..+++.. ..... ..+++.++++.+++.....++++.+ |||||||||+|||||+
T Consensus 82 i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~ 159 (250)
T 2d2e_A 82 LFLAFQYPVEVP--GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV 159 (250)
T ss_dssp BCCCCCCCC-CC--SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred EEEeccCCcccc--CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 789999864322 2233332211 11111 1346788999999953456788898 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChhH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~ 231 (239)
.+|++|||||||++||+.++..+++.+++. +.|||+||||++++..+ ||++++|++|+++ ..|+++.
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 230 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV-ATGGPEL 230 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE-EEESHHH
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999999999999998888654 56999999999999888 5999999999997 5687763
No 31
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.6e-50 Score=338.64 Aligned_cols=200 Identities=24% Similarity=0.416 Sum_probs=161.4
Q ss_pred CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376 27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105 (239)
Q Consensus 27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 105 (239)
.+|+++|++++|++ ++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.. +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~~-~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSWI-M 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCCC-C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCcc-c
Confidence 37999999999952 45799999999999999999999999999999999999999999999987 58999998742 2
Q ss_pred CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376 106 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175 (239)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt 175 (239)
..+..+++.... .....+..++++.+++.+. ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 82 --~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 82 --PGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp --SBCHHHHHHTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred --CCCHHHHhhccC-CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 236666654321 1223334445555554321 122356899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 176 NHLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 176 ~~LD~~~~~~l~~~l-~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
++||+.++..+++.+ .+. +.|||+||||++++. .||++++|++|+++ ..|+++++.+
T Consensus 159 s~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 218 (229)
T 2pze_A 159 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN 218 (229)
T ss_dssp TTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999998864 332 569999999999986 59999999999997 5788887643
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.8e-51 Score=342.48 Aligned_cols=199 Identities=22% Similarity=0.348 Sum_probs=161.0
Q ss_pred eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
+|+++|++++|++ +..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999953 35789999999999999999999999999999999999999999999988 4999999864 2
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCC------c----ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376 107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT------G----NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176 (239)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~----~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~ 176 (239)
...+..+++.... ....+...++++.+++. . ...++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 78 ~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 78 QNDSLRENILFGC-QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp CSEEHHHHHHTTS-CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCHHHHhhCcc-ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 2346666654321 11122233333333321 1 12357789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHh---h--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 177 HLDLDAVEALIQGLV---L--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 177 ~LD~~~~~~l~~~l~---~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+||+.++..+++.+. + .+.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHhh
Confidence 999999999998883 2 2569999999999886 69999999999997 5788887643
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.6e-51 Score=345.23 Aligned_cols=196 Identities=24% Similarity=0.332 Sum_probs=167.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 96 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~ 96 (239)
+|+++|++++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.+++.. .++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 7999999986 4899999999999999999999999999999999999999 999988742 4999
Q ss_pred EeeccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC-------E
Q 026376 97 FSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH-------I 168 (239)
Q Consensus 97 ~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~-------l 168 (239)
++|++.. ....+..+++.... .....+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+ +
T Consensus 78 v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 78 LSQQQTP--PFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp ECSCCCC--CTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred ECCCCcc--CCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 9998642 22345555554211 1123667889999999964 5678899999999999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
|||||||+|||+.++..+.+.+++. +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 221 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL 221 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHHS
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999888877643 679999999999999999999999999997 568877663
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2e-50 Score=343.93 Aligned_cols=202 Identities=26% Similarity=0.359 Sum_probs=165.9
Q ss_pred CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
++|+++||+++|++. ..+|+++||+|++|++++|+||||||||||+|+|+|+++| +|+|.+++. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999643 3689999999999999999999999999999999999987 899998773 24
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhc
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~ 163 (239)
++|++|++.. + ..+..+++.........+++.++++.+++.+.. .++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTIL-F--NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCCC-C--SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcc-c--ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 9999998742 2 236666654322123455677777777764321 23567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
.+|++|||||||++||+.++..+++.+.+. +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999888877654 569999999999986 59999999999997 5788877643
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-51 Score=337.98 Aligned_cols=190 Identities=23% Similarity=0.349 Sum_probs=158.1
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEee
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQ 99 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q 99 (239)
..+|+++|++++|+ + .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.. .++|++|
T Consensus 8 ~~~l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 45899999999995 4 79999999999999999999999999999999999999999999998743 5999999
Q ss_pred ccCCCCCCCCcHHHHHH---HhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376 100 HHVDGLDLSSNPLLYMM---RCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt 175 (239)
++... ...++.+++. .... ....+++.++++.+++.. . ++++.+||||||||++|||||+.+|++|||||||
T Consensus 86 ~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EIIVP--RKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCCCC--TTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCcCC--CCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 86432 2234444432 1111 223567889999999975 4 7889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 176 NHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 176 ~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
++||+.++..+++.+.+. +.|||++|||++++..+||+++++ .|++
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999998888777543 569999999999999999998855 4555
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-49 Score=354.23 Aligned_cols=201 Identities=21% Similarity=0.286 Sum_probs=171.2
Q ss_pred CCeEEEEeeEEEcC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 26 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 26 ~~~l~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
...|+++||+|+|+ ++..+|++|||+|++||+++|+||||||||||||+|+|+++ ++|+|.+++. ..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 34699999999995 34579999999999999999999999999999999999998 9999998873 35
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCC-----------CChHHHHHHHHHHHh
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----------LSGGQKSRVAFAKIT 162 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqrv~laral 162 (239)
++|+||++... ..+...++.. ......+++.++++.+++.+ ..++++.+ |||||||||+|||||
T Consensus 96 ig~v~Q~~~lf---~~tv~enl~~-~~~~~~~~v~~~l~~~~L~~-~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 96 FGVIPQKVFIF---SGTFRKNLDP-NAAHSDQEIWKVADEVGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp EEEESCCCCCC---SEEHHHHHCT-TCCSCHHHHHHHHHHTTCHH-HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCcccC---ccCHHHHhhh-ccccCHHHHHHHHHHhCCHH-HHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 99999987432 2466666532 22345678889999999964 55677777 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+.+|++|||||||++||+..+..+.+.|++. +.|+|+||||++.+. .||||++|++|+++ ..|+++++.+
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~~ 242 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVR-QYDSILELYH 242 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999988764 469999999997665 69999999999997 5788888754
No 37
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-48 Score=366.95 Aligned_cols=203 Identities=19% Similarity=0.326 Sum_probs=170.9
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
..|+++|++|+|+++..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 35999999999975567999999999999999999999999999999999999999999999873 2599
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhccC
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~~ 165 (239)
|++|++.. +..+..+++....+..+.+++.++++.+++.+..... ...+||||||||++|||||+.+
T Consensus 433 ~v~Q~~~l---f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 433 IVLQDTIL---FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EECTTCCC---CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred EEeCCCcc---ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999742 2346667665333334556778888887775432221 1268999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|++|||||||++||+.+...+.+.+.+. +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 578 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV-EMGKHDELIQ 578 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE-ECSCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999988877653 6799999999999875 9999999999997 6899988754
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.3e-48 Score=360.86 Aligned_cols=203 Identities=23% Similarity=0.319 Sum_probs=170.4
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
.+++++|++|+|+++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 479999999999643 57999999999999999999999999999999999999999999998873 359
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~ 163 (239)
+|++|++... ..+..+++.... +..+.+++.++++.+++.+... .++..+||||||||++|||||+
T Consensus 420 ~~v~Q~~~l~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 420 ALVSQNVHLF---NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred EEEcCCCccc---cccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 9999987432 235566554322 2345677888888888754221 2345799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
.+|++|||||||++||+.+...+.+.+.+. +.|+|+||||++.+. .||++++|++|+++ ..|+++++.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLLA 567 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999998888764 579999999999987 69999999999997 6799887653
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=5.9e-48 Score=361.94 Aligned_cols=203 Identities=24% Similarity=0.380 Sum_probs=170.2
Q ss_pred CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..++++|++|+|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 36999999999964 356999999999999999999999999999999999999999999999874 259
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++.. +..+..+++....+....+++.++++..++.+... .++..+||||||||++|||||+.
T Consensus 418 ~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 418 GLVQQDNIL---FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EEECSSCCC---CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcc---CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 999998742 23467777654333445667778887777643221 23346899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|++|||||||++||+.+...+.+.+.+. ++|+|+||||++.+.. ||++++|++|+++ ..|+++++.+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~el~~ 564 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIV-ETGTHRELIA 564 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999998888877653 5699999999999864 9999999999997 6799988754
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.7e-48 Score=361.42 Aligned_cols=203 Identities=24% Similarity=0.335 Sum_probs=171.4
Q ss_pred CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
.+++++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999643 57999999999999999999999999999999999999999999998873 259
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~ 163 (239)
+|++|++.. +..+..+++.... +..+.+++.++++.+++.+.. ..++..+||||||||++|||||+
T Consensus 420 ~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 420 ALVSQNVHL---FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp EEECSSCCC---CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred eEEccCCcC---CCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 999998743 2346666664322 234567788899888875322 22356899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
++|++|||||||++||+.+...+.+.+.+. +.|+|+||||++.+. .||++++|++|+++ ..|+++++.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHHH
Confidence 999999999999999999999888877653 679999999999886 69999999999997 5799888754
No 41
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.1e-47 Score=331.56 Aligned_cols=197 Identities=25% Similarity=0.429 Sum_probs=148.0
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 105 (239)
.++|+++|+++.+ ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.. +
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~l-~ 111 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWI-M 111 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCCC-C
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCcc-C
Confidence 3479999999864 4689999999999999999999999999999999999999999999987 58999998642 2
Q ss_pred CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376 106 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175 (239)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt 175 (239)
. .+..+++. .. ......+.++++.+++.+.. .++++.+||||||||++|||||+.+|++|||||||
T Consensus 112 ~--~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 112 P--GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp S--SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred c--ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 2 36666665 22 12233344555555553211 12345899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 176 NHLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 176 ~~LD~~~~~~l~~~l-~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
++||+.++..+++.+ .+. +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus 188 s~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 247 (290)
T 2bbs_A 188 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN 247 (290)
T ss_dssp TTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHhh
Confidence 999999999998864 332 569999999999986 59999999999997 6788887643
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-47 Score=356.61 Aligned_cols=204 Identities=22% Similarity=0.319 Sum_probs=170.2
Q ss_pred CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
..++++|++|+|++ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 46999999999964 357999999999999999999999999999999999999999999999873 359
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|++.. +..+..+++....+....+++.++++..++.+ ....+++.+||||||||++|||||++
T Consensus 420 ~~v~Q~~~l---f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 420 SAVPQETVL---FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp EEECSSCCC---CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCcC---cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 999998742 23466666643323344566666666655432 12345678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
+|++|||||||++||+.+...+.+.+++. +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+.
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~-~~g~~~el~~~ 567 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVA-GFGTHKELLEH 567 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEE-EEECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence 99999999999999999999998888754 579999999999986 79999999999997 67999887643
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.5e-47 Score=358.77 Aligned_cols=201 Identities=27% Similarity=0.397 Sum_probs=166.8
Q ss_pred EEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376 29 ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 95 (239)
Q Consensus 29 l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~ 95 (239)
++++|++|+|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 9999999999643 46999999999999999999999999999999999999999999998873 2599
Q ss_pred EEeeccCCCCCCCCcHHHHHHHhCCC---CcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHh
Q 026376 96 VFSQHHVDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT 162 (239)
Q Consensus 96 ~~~q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral 162 (239)
|++|++.. +..+..+++....+. .+.+++.++++.+++.+.. ..+++.+||||||||++|||||
T Consensus 422 ~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 422 TVSQEPIL---FSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp EECSSCCC---CSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred EEccCCcc---cCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 99998743 234666666432222 4567788899988874321 1233589999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+++|++|||||||++||+.+...+.+.+.+. +.|+|+||||++.+. .||++++|++|+++ ..|+++++.+
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 570 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKIT-EYGKHEELLS 570 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECSCC---
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999988887653 679999999999986 59999999999997 5688777643
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.9e-46 Score=344.14 Aligned_cols=202 Identities=24% Similarity=0.296 Sum_probs=167.2
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
++++++++|+++.|+ + ..|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.+ ...++|++|++...
T Consensus 284 ~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~~~ 359 (538)
T 1yqt_A 284 RETLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIKAD 359 (538)
T ss_dssp CCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCCCC
T ss_pred CCeEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCcCC
Confidence 356899999999994 3 4789999999999999999999999999999999999999999986 34699999986432
Q ss_pred CCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376 105 LDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182 (239)
Q Consensus 105 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~ 182 (239)
...++...+... ......+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 360 --~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 360 --YEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp --CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred --CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 223333332211 0001345678899999996 46788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeC--CeEEeeCCChhHHHH
Q 026376 183 VEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK 234 (239)
Q Consensus 183 ~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 234 (239)
+..+.+.+++ .+.|||+||||++++..+|||+++|++ |++. ..|+++++..
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~~ 493 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHHh
Confidence 9988887764 377999999999999999999999986 6665 5688877654
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.6e-45 Score=346.11 Aligned_cols=202 Identities=24% Similarity=0.305 Sum_probs=166.9
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
+.++++++|+++.|+ + ..|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.+ ...++|++|++...
T Consensus 354 ~~~~l~~~~l~~~~~-~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~~~ 429 (607)
T 3bk7_A 354 RETLVEYPRLVKDYG-S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYIKAE 429 (607)
T ss_dssp CCEEEEECCEEEECS-S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEECSSCCCC
T ss_pred CceEEEEeceEEEec-c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEecCccCC
Confidence 346899999999994 3 4789999999999999999999999999999999999999999976 34699999986432
Q ss_pred CCCCCcHHHHHHHh-CCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376 105 LDLSSNPLLYMMRC-FPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182 (239)
Q Consensus 105 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~ 182 (239)
. ..++...+... ... ...+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 430 ~--~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 430 Y--EGTVYELLSKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp C--SSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred C--CCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 2 23333332211 000 1245678899999997 46788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeC--CeEEeeCCChhHHHH
Q 026376 183 VEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK 234 (239)
Q Consensus 183 ~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 234 (239)
+..+.+.++++ +.|||+||||++++..+|||+++|++ |++. ..|+++++..
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence 99888877643 67999999999999999999999986 6665 5688877654
No 46
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.1e-45 Score=357.50 Aligned_cols=202 Identities=35% Similarity=0.665 Sum_probs=165.9
Q ss_pred CCCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCC
Q 026376 25 GPPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 103 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~ 103 (239)
++++|+++|++++|+++ +.+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|++++..+++|++|+...
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~ 747 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFA 747 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHH
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhh
Confidence 35689999999999642 56899999999999999999999999999999999999999999999877789999987410
Q ss_pred C--CCCCCcHHHHHH-----------------------------------------------------------------
Q 026376 104 G--LDLSSNPLLYMM----------------------------------------------------------------- 116 (239)
Q Consensus 104 ~--~~~~~~~~~~~~----------------------------------------------------------------- 116 (239)
. .....++..++.
T Consensus 748 ~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi 827 (986)
T 2iw3_A 748 HIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENI 827 (986)
T ss_dssp HGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEST
T ss_pred hhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhh
Confidence 0 000000000000
Q ss_pred ------------------------------------------HhCCCCcHHHHHHHHHhcCCCccc-ccCCCCCCChHHH
Q 026376 117 ------------------------------------------RCFPGVPEQKLRAHLGSFGVTGNL-ALQPMYTLSGGQK 153 (239)
Q Consensus 117 ------------------------------------------~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqk 153 (239)
........++++++++.+|+.... .++++.+||||||
T Consensus 828 ~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQk 907 (986)
T 2iw3_A 828 GMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQK 907 (986)
T ss_dssp TSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHH
T ss_pred hcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHH
Confidence 001122346788899999997543 5788999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376 154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG 227 (239)
Q Consensus 154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 227 (239)
|||+|||||+.+|++|||||||+|||+.+...+.+.++++++|||+||||++++..+||++++|++|+++ ..|
T Consensus 908 QRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv-~~G 980 (986)
T 2iw3_A 908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMT-PSG 980 (986)
T ss_dssp HHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCC-C--
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeC
Confidence 9999999999999999999999999999999999999988889999999999999999999999999986 444
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-44 Score=365.69 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=173.3
Q ss_pred CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
..|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .+
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 359999999999743 36999999999999999999999999999999999999999999999874 36
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHH
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~lara 161 (239)
++++||++.. +..+..+++... ....+.+++.++++..++.+.... ....+||||||||++||||
T Consensus 1155 i~~V~Qdp~L---F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1155 IAIVSQEPTL---FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp EEEECSSCCC---CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCEe---eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 9999999853 345677776422 124567889999998887543221 2346799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
|+++|+|||||||||+||+++...+.+.|++. ++|+|+|+|+++.+. .||+|++|++|+|+ ..|+++++.+.
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~Iv-E~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM-NADCIAVVSNGTII-EKGTHTQLMSE 1305 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT-TCSEEEEESSSSEE-EEECHHHHHHC
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence 99999999999999999999999999999865 579999999999987 49999999999998 57999998653
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-44 Score=332.86 Aligned_cols=189 Identities=17% Similarity=0.223 Sum_probs=158.6
Q ss_pred CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376 25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104 (239)
Q Consensus 25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 104 (239)
..+.++++|+++.|+ + ..|+.+||+|++||+++|+||||||||||+|+|+|+++|++|+|...+ ..++|++|+....
T Consensus 266 ~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~~~ 342 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLG-D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIFPN 342 (538)
T ss_dssp CCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCCCC
T ss_pred ccceEEEcceEEEEC-C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhcccc
Confidence 346799999999994 3 568889999999999999999999999999999999999999998764 4689999986432
Q ss_pred CCCCCcHHHHHHHhCC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 026376 105 LDLSSNPLLYMMRCFP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~ 181 (239)
...++..++..... ......+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 343 --~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 343 --YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp --CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred --cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 23344444432211 123345788899999974 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 182 AVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 182 ~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
++..+.+.+++ .+.|||+||||++++..+||||++|++
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99888777754 367999999999999999999999986
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.3e-44 Score=362.22 Aligned_cols=202 Identities=22% Similarity=0.312 Sum_probs=173.6
Q ss_pred eEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376 28 IISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~ 94 (239)
.|+++||+|+|++ +.++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.+++. ..+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 5999999999974 357999999999999999999999999999999999999999999999874 369
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~ 164 (239)
+|++|+++. +..+..+++....+..+++++.++++..++.++.. .....+||||||||++||||+++
T Consensus 495 ~~v~Q~~~L---f~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 495 AVVSQEPAL---FNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp EEECSSCCC---CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccCCccee---eCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 999999853 45677777754444567888999988887653322 23456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
+|+|||||||||+||.++...+.+.+.+. ++|+|+|||++..+. .||+|++|++|+++ ..|+++++.+
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~iv-e~Gth~eL~~ 641 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVV-EVGDHRALMA 641 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEE-EEECHHHHHT
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeee-ccCCHHHHHH
Confidence 99999999999999999988888888654 679999999999886 59999999999997 6899988753
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1e-43 Score=357.82 Aligned_cols=203 Identities=23% Similarity=0.320 Sum_probs=169.0
Q ss_pred CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
..|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 359999999999643 36999999999999999999999999999999999999999999999874 25
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhc
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~ 163 (239)
++|++|++.. +..+..+++.........+++.++++..++.+. .......+||||||||++|||||+
T Consensus 466 i~~v~Q~~~l---~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 466 IGVVSQEPVL---FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EEEECSSCCC---CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCCcc---CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 9999999753 234666666544334556667777666554321 123456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
.+|+|||||||||+||+++...+.+.+.. .++|+|+|||+++.+.. ||+|++|++|+++ +.|+++++.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~-~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIV-EQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCC-CEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999998888877754 36799999999999976 9999999999997 6899988764
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-44 Score=333.83 Aligned_cols=197 Identities=21% Similarity=0.267 Sum_probs=161.7
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCC-----CEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 32 SDASFGYPGGPILFKNLNFGIDLD-----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~i~~G-----e~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
+++++.|++...+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+.. ....++|++|+....+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~~~- 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQKIAPKF- 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSSCCCCC-
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEecccccccC-
Confidence 678888865446789999999999 88999999999999999999999999999842 2346899999864332
Q ss_pred CCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376 107 LSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 184 (239)
Q Consensus 107 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~ 184 (239)
..+....+..... ......+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 427 -~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 504 (608)
T 3j16_B 427 -PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI 504 (608)
T ss_dssp -CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHH
T ss_pred -CccHHHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence 2344444332221 123456778999999974 678999999999999999999999999999999999999999988
Q ss_pred HHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeC--CeEEeeCCChhHHHH
Q 026376 185 ALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK 234 (239)
Q Consensus 185 ~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 234 (239)
.+.+.+++ .+.|||+||||++++..+|||+++|++ |++. ..|+++++..
T Consensus 505 ~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~ 559 (608)
T 3j16_B 505 ICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLT 559 (608)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhh
Confidence 88776654 367999999999999999999999986 7876 6788877654
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.4e-43 Score=354.01 Aligned_cols=203 Identities=25% Similarity=0.380 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376 27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 93 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 93 (239)
..++++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 359999999999643 35899999999999999999999999999999999999999999998873 35
Q ss_pred EEEEeeccCCCCCCCCcHHHHHHHhC--CCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHH
Q 026376 94 IAVFSQHHVDGLDLSSNPLLYMMRCF--PGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKI 161 (239)
Q Consensus 94 ~~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~lara 161 (239)
++|++|++.. +..+..+++.... .....+++.++++..++.+... .....+||||||||++||||
T Consensus 1109 i~~v~Q~~~l---~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPIL---FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCCC---CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCcc---ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 9999999742 3456666664221 1234566777777666542211 12346899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
|+.+|+||||||||++||+.+...+.+.+.+. +.|||+||||++.+.. ||||++|++|+++ ..|+++++.+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVK-EHGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEE-EEECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999998888654 5699999999999865 9999999999997 5799988764
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.9e-42 Score=336.82 Aligned_cols=200 Identities=27% Similarity=0.426 Sum_probs=162.1
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G-l~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
.|...|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+| .+ .|. ......+++|++|+.. ...
T Consensus 435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTH 508 (986)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCC
T ss_pred eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccc
Confidence 466779999995 5679999999999999999999999999999999995 22 110 0011224678887642 122
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376 107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186 (239)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l 186 (239)
...+...++....... .+++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||+|||+.++.++
T Consensus 509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 2345555553211122 667889999999964456889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376 187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234 (239)
Q Consensus 187 ~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 234 (239)
.+.|++.+.|||+||||++++..+||++++|++|+++.+.|+++++.+
T Consensus 588 ~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 588 VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999988677999999999999999999999999999656899998865
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-43 Score=326.86 Aligned_cols=187 Identities=22% Similarity=0.288 Sum_probs=147.6
Q ss_pred EEE-EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE---------EecC--------
Q 026376 29 ISF-SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA-------- 90 (239)
Q Consensus 29 l~~-~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i---------~~~~-------- 90 (239)
.++ +||+++|++...+++++| +|++||+++|+||||||||||+|+|+|+++|++|++ .+.+
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 699999954334899999 999999999999999999999999999999999995 1222
Q ss_pred -----ceEEEEEeeccCCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 91 -----KVRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 91 -----~~~~~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
...+++++|....... ...+....+... ...+++.++++.+|+.. ..++++.+|||||||||+|||||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---~~~~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---DETGKLEEVVKALELEN-VLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---CSSSCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---hHHHHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1246788876421111 111333333221 11345788999999974 5688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEG 220 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G 220 (239)
+|++||||||||+||+.++.++++.|+++ +.|||+||||++++..+||++++|++|
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999998887777543 779999999999999999999999864
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.5e-43 Score=327.69 Aligned_cols=188 Identities=23% Similarity=0.289 Sum_probs=151.3
Q ss_pred eEEE--------EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE---------EecC
Q 026376 28 IISF--------SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA 90 (239)
Q Consensus 28 ~l~~--------~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i---------~~~~ 90 (239)
+|++ +|++++|++...+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++ .+.+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4788 899999954334899999 999999999999999999999999999999999995 1222
Q ss_pred -------------ceEEEEEeeccCCCC-CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376 91 -------------KVRIAVFSQHHVDGL-DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 156 (239)
Q Consensus 91 -------------~~~~~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 156 (239)
...+++++|...... .+..+..+.+... ...+++.++++.+|+.+ ..++++.+|||||||||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELEN-VLDRELHQLSGGELQRV 237 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCc-hhCCChhhCCHHHHHHH
Confidence 124677777632111 1112344333221 12345788999999974 57889999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEG 220 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G 220 (239)
+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999998887777654 679999999999999999999999865
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-40 Score=309.87 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=141.7
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE-----------ecCc----------
Q 026376 33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK---------- 91 (239)
Q Consensus 33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~---------- 91 (239)
|++++|+++...+++++ .+.+||+++|+||||||||||||+|+|+++|++|+|. +.+.
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 56888865555677777 6899999999999999999999999999999999983 1111
Q ss_pred ---eEEEEEeeccCC----CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376 92 ---VRIAVFSQHHVD----GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164 (239)
Q Consensus 92 ---~~~~~~~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~ 164 (239)
....+.+|.... ......+....+.. ......+++.++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL-RMEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH-HCCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh-hhhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHHHHHHHHHHHh
Confidence 001122221100 00000011111111 12234567899999999974 5789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
+|++|||||||++||+.++..+.+.++++ +.|||+||||++++..+||++++|++|.
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999998888877654 5699999999999999999999998765
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3e-39 Score=307.54 Aligned_cols=190 Identities=19% Similarity=0.205 Sum_probs=129.3
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhcCcCCCceeEE-------ecCc--
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTIL---------------------KLIAGELQPSSGTVF-------RSAK-- 91 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl---------------------~~l~Gl~~p~~G~i~-------~~~~-- 91 (239)
..+|+||||+|++||+++|+||||||||||+ +++.|+..|+.|.|. +++.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 999999999866553 2221
Q ss_pred -----eEEEEEeeccCCC-----------------CCCCCcHHHHHHH--hC--CCC----cH------HHHHHHHHhcC
Q 026376 92 -----VRIAVFSQHHVDG-----------------LDLSSNPLLYMMR--CF--PGV----PE------QKLRAHLGSFG 135 (239)
Q Consensus 92 -----~~~~~~~q~~~~~-----------------~~~~~~~~~~~~~--~~--~~~----~~------~~~~~~l~~~~ 135 (239)
..+++++|..... .....+..+++.. .. ... .. .+..++++.+|
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 1223333321100 0000111111100 00 000 00 11223588899
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhh
Q 026376 136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS 210 (239)
Q Consensus 136 l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~ 210 (239)
+.+...++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++.++++.+++ .+.|||+||||++++. .
T Consensus 191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~ 269 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-A 269 (670)
T ss_dssp CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-H
T ss_pred CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-h
Confidence 97554678999999999999999999999998 9999999999999999888776654 4679999999999876 5
Q ss_pred cCeEEEE------eCCeEEeeCCChhHHH
Q 026376 211 VEELWVV------SEGKATPFHGTFHDYK 233 (239)
Q Consensus 211 ~d~i~~l------~~G~i~~~~g~~~~~~ 233 (239)
||++++| ++|+++ +.|+++++.
T Consensus 270 ~d~ii~l~~g~~~~~G~i~-~~g~~~~~~ 297 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVV-AAGTPEEVM 297 (670)
T ss_dssp CSEEEEECSSSGGGCCSEE-EEECHHHHH
T ss_pred CCEEEEecccccccCCEEE-EecCHHHHh
Confidence 9999999 889997 689888764
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.6e-39 Score=299.38 Aligned_cols=184 Identities=20% Similarity=0.262 Sum_probs=138.1
Q ss_pred EeeEEEcCCCCceeeeeeEE-EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE-----------EecCc--------
Q 026376 32 SDASFGYPGGPILFKNLNFG-IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-----------FRSAK-------- 91 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~-i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i-----------~~~~~-------- 91 (239)
++.+.+|+.+. |+-..|. +++||++||+||||||||||+|+|+|+++|++|+| .+.+.
T Consensus 3 ~~~~~~~~~~~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 3 GEVIHRYKVNG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CCEEEESSTTS--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCceecCCCc--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 35678896443 3333444 45899999999999999999999999999999998 22221
Q ss_pred -----eEEEEEeeccCCCC-CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376 92 -----VRIAVFSQHHVDGL-DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165 (239)
Q Consensus 92 -----~~~~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~ 165 (239)
..+....|...... ....+....+... ...+++.++++.+++.. ..++++.+|||||||||+|||||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~Qrv~iA~aL~~~ 156 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKI---DERGKKDEVKELLNMTN-LWNKDANILSGGGLQRLLVAASLLRE 156 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH---CCSSCHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcc---hhHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 12333333321100 0111222222221 12335678899999964 66889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
|++||||||||+||+.++.++.+.++++ +.|||+||||++++..+||+|++|++|.
T Consensus 157 p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 157 ADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999888877654 6799999999999999999999998654
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.4e-37 Score=294.51 Aligned_cols=107 Identities=24% Similarity=0.342 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 026376 125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL 198 (239)
Q Consensus 125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii 198 (239)
.+..+.+..+++.....++++.+|||||||||+|||||+.+| ++|||||||+|||+.++..+++.+++ .+.|||
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 455677888998654567889999999999999999999887 59999999999999998888776654 467999
Q ss_pred EEecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHH
Q 026376 199 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK 233 (239)
Q Consensus 199 ~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 233 (239)
+||||++++. .||+|++| ++|+++ +.|+++++.
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence 9999999885 69999999 899997 689988864
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=2.3e-35 Score=284.50 Aligned_cols=108 Identities=23% Similarity=0.292 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEE
Q 026376 125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGLV---LFQGGIL 198 (239)
Q Consensus 125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii 198 (239)
.++.++|+.+++.....++++.+|||||||||+||++|+.+ |+||||||||+|||+..+..+.+.+. +.+.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 35678899999975445788999999999999999999996 79999999999999999888877664 4477999
Q ss_pred EEecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376 199 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK 234 (239)
Q Consensus 199 ~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 234 (239)
+||||++++ ..||+|++| ++|+++ +.|+++++.+
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~~ 827 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVAQ 827 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHTT
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHHh
Confidence 999999999 689999999 689997 6788888743
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=295.86 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=152.6
Q ss_pred CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce-e-EEecCc--eEEEEEeecc
Q 026376 26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-T-VFRSAK--VRIAVFSQHH 101 (239)
Q Consensus 26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G-~-i~~~~~--~~~~~~~q~~ 101 (239)
.++++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |++++. ..++|++|+.
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 45788999998883 69999999999999999999999999999999999999 8 988763 4578888875
Q ss_pred CC-----CCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH--hccCCCE----E
Q 026376 102 VD-----GLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI--TFKKPHI----I 169 (239)
Q Consensus 102 ~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara--l~~~p~l----l 169 (239)
.. .++...+. +.... ......+++.++++.+|+... .+ +.+|||||||||+|||| |+.+|++ |
T Consensus 189 ~l~~~~~~~tv~eni--~~~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGL 263 (460)
T 2npi_A 189 SATPISDILDAQLPT--WGQSLTSGATLLHNKQPMVKNFGLERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGC 263 (460)
T ss_dssp EEEECCSCCCTTCTT--CSCBCBSSCCSSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred hhcccccccchhhhh--cccccccCcchHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence 21 11111111 10000 001122345567888898653 33 78999999999999999 9999999 9
Q ss_pred EEeC-CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH------HHhhhcCe-----EEEEe-CCeEEeeCCChhHHH
Q 026376 170 LLDE-PSNHLDLDAVEALIQGLVLFQGGILMVSHDEH------LISGSVEE-----LWVVS-EGKATPFHGTFHDYK 233 (239)
Q Consensus 170 llDE-Pt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~~~~~ 233 (239)
|||| ||++||+. ...+.+.+++.+.|+|+||||.+ ++..+||+ |++|+ +|+++ .|+++++.
T Consensus 264 lLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~ 337 (460)
T 2npi_A 264 IVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR 337 (460)
T ss_dssp EEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred EEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence 9999 99999999 67777777777889999999987 77889999 99999 99986 68887663
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=8e-35 Score=281.77 Aligned_cols=106 Identities=25% Similarity=0.341 Sum_probs=91.8
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 026376 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM 199 (239)
Q Consensus 126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~ 199 (239)
+..++++.+++.....++++.+|||||||||+||++|+.+| ++|||||||+|||+.++..+++.|.+ .+.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999753567899999999999999999999865 99999999999999999888776654 4679999
Q ss_pred EecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHH
Q 026376 200 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK 233 (239)
Q Consensus 200 vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 233 (239)
||||++++. .||++++| ++|+++ +.|+++++.
T Consensus 904 isHdl~~i~-~aDrIivL~p~gG~~~G~Iv-~~g~~~el~ 941 (972)
T 2r6f_A 904 IEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVA 941 (972)
T ss_dssp ECCCHHHHT-TCSEEEEECSSSTTSCCSEE-EEESHHHHH
T ss_pred EcCCHHHHH-hCCEEEEEcCCCCCCCCEEE-EecCHHHHH
Confidence 999999985 79999999 689997 678887764
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-34 Score=276.71 Aligned_cols=108 Identities=24% Similarity=0.335 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 026376 125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL 198 (239)
Q Consensus 125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii 198 (239)
.++.++|+.+|+.....++++.+|||||||||+|||||+.+| ++|||||||+|||+.++..+++.|.+ .+.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 456778999999755567899999999999999999999875 79999999999999999888777654 477999
Q ss_pred EEecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376 199 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK 234 (239)
Q Consensus 199 ~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 234 (239)
+||||++++.. ||+|++| ++|+++ +.|+++++.+
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 99999999865 9999999 899997 6899988753
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=9.3e-34 Score=275.15 Aligned_cols=107 Identities=24% Similarity=0.331 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 026376 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM 199 (239)
Q Consensus 126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~ 199 (239)
+..++++.+++.....++++.+|||||||||+||++|+.+| ++|||||||+|||+.++..+++.|.+ .+.|||+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34678899999653567889999999999999999999865 99999999999999999888776654 4779999
Q ss_pred EecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376 200 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK 234 (239)
Q Consensus 200 vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 234 (239)
||||++++. .||++++| ++|+++ +.|+++++..
T Consensus 922 isHdl~~i~-~aDrIivL~p~gg~~~G~Iv-~~G~~~el~~ 960 (993)
T 2ygr_A 922 IEHNLDVIK-TSDWIIDLGPEGGAGGGTVV-AQGTPEDVAA 960 (993)
T ss_dssp ECCCHHHHT-TCSEEEEEESSSTTSCSEEE-EEECHHHHHH
T ss_pred EcCCHHHHH-hCCEEEEECCCcCCCCCEEE-EecCHHHHHh
Confidence 999999985 79999999 689997 6799888754
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=1.1e-33 Score=254.58 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=70.0
Q ss_pred CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEE----eC
Q 026376 148 LSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV----SE 219 (239)
Q Consensus 148 LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l----~~ 219 (239)
||||||||++||++|+.+| ++|||||||+|||+.++.++.+.|+++ +.|||+||||++++. +||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999998876 579999999998875 79999999 99
Q ss_pred CeEE
Q 026376 220 GKAT 223 (239)
Q Consensus 220 G~i~ 223 (239)
|+++
T Consensus 375 G~~~ 378 (415)
T 4aby_A 375 GRTV 378 (415)
T ss_dssp TEEE
T ss_pred CceE
Confidence 9875
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.97 E-value=2.5e-31 Score=236.35 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=73.5
Q ss_pred cCCCCCCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcC
Q 026376 142 LQPMYTLSGGQKSRVAFAKITF------KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE 212 (239)
Q Consensus 142 ~~~~~~LSgGqkqrv~laral~------~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d 212 (239)
++++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.+.+. +.|||+||||++++ ..||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence 4678899999999999999999 799999999999999999999988887654 57999999999984 5799
Q ss_pred eEEEEeCCeEE
Q 026376 213 ELWVVSEGKAT 223 (239)
Q Consensus 213 ~i~~l~~G~i~ 223 (239)
++++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999985
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.97 E-value=2.8e-34 Score=236.67 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=97.0
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec--------CceEEEEEeeccCCCC-CCCCcH
Q 026376 41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--------AKVRIAVFSQHHVDGL-DLSSNP 111 (239)
Q Consensus 41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~--------~~~~~~~~~q~~~~~~-~~~~~~ 111 (239)
++.+|+++ ++|++++|+||||||||||+++|+|+ +|++|+|... .+..++|++|++...+ .+....
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~ 86 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPL 86 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHH
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHH
Confidence 34688885 89999999999999999999999999 9999998431 1234788888752222 111000
Q ss_pred HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 026376 112 LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV 191 (239)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 191 (239)
... ........++.++++. ++ |||||++|||||+.+|++|||||||++ ++..+.+.+.
T Consensus 87 ~~~---~~~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~ 144 (208)
T 3b85_A 87 HDA---LRDMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT 144 (208)
T ss_dssp HHH---HTTTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred HHH---HHHhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence 111 1111223455666654 32 999999999999999999999999999 6667777776
Q ss_pred hc--CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 192 LF--QGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 192 ~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
+. +.||| ||||++++.. ....++|.
T Consensus 145 ~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 145 RLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp TBCTTCEEE-EEEC----------------CC
T ss_pred HhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 54 56888 9999987764 33455665
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.97 E-value=1.8e-31 Score=213.15 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=95.9
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHH
Q 026376 47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 126 (239)
Q Consensus 47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (239)
|+||++++||+++|+||||||||||+|++.+-... .......++++|++... .+........ ...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~------~~~d~~~g~~~~~~~~~-~~~~~~~~~~--------~~~ 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEV------ISSDFCRGLMSDDENDQ-TVTGAAFDVL--------HYI 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGE------EEHHHHHHHHCSSTTCG-GGHHHHHHHH--------HHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeE------EccHHHHHHhcCcccch-hhHHHHHHHH--------HHH
Confidence 68999999999999999999999999976532211 11111123444442110 0000001100 011
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH----------------HHHHHHHHH
Q 026376 127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD----------------AVEALIQGL 190 (239)
Q Consensus 127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~----------------~~~~l~~~l 190 (239)
. ......+... ..+ .....|+|||||++||||++.+|++|+|||||++||+. ....+.+.+
T Consensus 66 ~-~~~~~~g~~~-~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 66 V-SKRLQLGKLT-VVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp H-HHHHHTTCCE-EEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred H-HHHHhCCCeE-EEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 1 1222345432 222 33567999999999999999999999999999999998 446666654
Q ss_pred ---hhcCCEEEEEecCHHHHhh
Q 026376 191 ---VLFQGGILMVSHDEHLISG 209 (239)
Q Consensus 191 ---~~~~~tii~vsHd~~~~~~ 209 (239)
++.+.|+|+||||++++..
T Consensus 143 ~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 143 KGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp TTHHHHTCSEEEEECSHHHHHH
T ss_pred hhHHhcCCcEEEEeCCHHHhhh
Confidence 3447799999999999875
No 69
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.96 E-value=8.8e-30 Score=204.93 Aligned_cols=153 Identities=13% Similarity=0.040 Sum_probs=108.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEe-----cCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFR-----SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 130 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~-----~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (239)
+++|+||||||||||+++|+|++... .|.... .....++|++|+.. ...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~----~~~~~------------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE----GKKKI------------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT----CCEEE-------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc----HHHHH-------------------
Confidence 68999999999999999999998532 332211 11235788888641 11111
Q ss_pred HHhcCCC-cccccCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEe-
Q 026376 131 LGSFGVT-GNLALQPMYTLSGGQKSRVAFAKI-----TFKKPHIILLDE--PSNHLDLDAVEALIQGLVLFQGGILMVS- 201 (239)
Q Consensus 131 l~~~~l~-~~~~~~~~~~LSgGqkqrv~lara-----l~~~p~llllDE--Pt~~LD~~~~~~l~~~l~~~~~tii~vs- 201 (239)
+..++.. ....++++.+||||||||++||+| ++.+|++||||| ||++||+.....+.+.+.+.+.|+|++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 0011111 123467788999999999999996 999999999999 9999999999999999988666788888
Q ss_pred --cCHHHHhhhcCeEEEEeCCeEEee-CCChhHHHHHh
Q 026376 202 --HDEHLISGSVEELWVVSEGKATPF-HGTFHDYKKML 236 (239)
Q Consensus 202 --Hd~~~~~~~~d~i~~l~~G~i~~~-~g~~~~~~~~~ 236 (239)
||.+++..+|++ .+|++..+ ..+.+++.+++
T Consensus 139 ~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~~l 172 (178)
T 1ye8_A 139 IRDVHPLVKEIRRL----PGAVLIELTPENRDVILEDI 172 (178)
T ss_dssp SSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHHHH
T ss_pred cCCCchHHHHHHhc----CCcEEEEecCcCHHHHHHHH
Confidence 599999999998 34454322 24445554433
No 70
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1.2e-28 Score=215.43 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=73.9
Q ss_pred ccCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeE
Q 026376 141 ALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEEL 214 (239)
Q Consensus 141 ~~~~~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i 214 (239)
.++++.+||+|||||++||+||+ .+|++|||||||++||+..+..+.+.+.+. +.+||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 35567899999999999999997 689999999999999999999998888765 569999999975 45689987
Q ss_pred --EEEeCCeEEeeCCChhH
Q 026376 215 --WVVSEGKATPFHGTFHD 231 (239)
Q Consensus 215 --~~l~~G~i~~~~g~~~~ 231 (239)
++|.+|.........++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888876544444444
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=1.1e-30 Score=234.81 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=127.7
Q ss_pred CceeeeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--EEEEEee
Q 026376 42 PILFKNLNFGIDLDS--------------------RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--RIAVFSQ 99 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge--------------------~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--~~~~~~q 99 (239)
+.++++|||+|++|+ +++|+||||||||||+|+|+|+.+|++|+|..++.. +.++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 999999999999999999999999999999876532 2377888
Q ss_pred ccCC-CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChH--HHHHHHHHHHhcc----------CC
Q 026376 100 HHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGG--QKSRVAFAKITFK----------KP 166 (239)
Q Consensus 100 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkqrv~laral~~----------~p 166 (239)
.+.. .+.+..++.. . ....++.++++.+++.+. . ..+. ||+| |+||++||++|+. +|
T Consensus 116 ~~~~~~ltv~D~~g~----~---~~~~~~~~~L~~~~L~~~-~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGI----G---STNFPPDTYLEKMKFYEY-D-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp CSSCTTEEEEECCCG----G---GSSCCHHHHHHHTTGGGC-S-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ccccCCeeehHhhcc----c---chHHHHHHHHHHcCCCcc-C-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 6421 1111111100 0 112357788999888642 2 2333 9999 9999999999999 99
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--------C----CEEEEEecCHHH--HhhhcCeEE-EEeCCe
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLF--------Q----GGILMVSHDEHL--ISGSVEELW-VVSEGK 221 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~--------~----~tii~vsHd~~~--~~~~~d~i~-~l~~G~ 221 (239)
++++|||||++||+.++..+++.+++. + .+|+++||++.. ++.+||++. .|..|.
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 999999999999998877766554332 1 368889999887 888999885 455554
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.94 E-value=1e-31 Score=232.80 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=120.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 107 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 107 (239)
+|+++||+|.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|.+...
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-------~~v~q~~~lf--- 165 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-------SFANHKSHFW--- 165 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------CGGGTTSGGG---
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------EEecCccccc---
Confidence 588999999995 56899999999999999999999999999999999999 89984 4556654211
Q ss_pred CCcHHH-HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376 108 SSNPLL-YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186 (239)
Q Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l 186 (239)
..+... ++.. .... ...+.+.++.+ +... .+ ...|||||||| ||||+.+|+||| |++||+.+...+
T Consensus 166 ~~ti~~~ni~~-~~~~-~~~~~~~i~~~-L~~g-ld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 166 LASLADTRAAL-VDDA-THACWRYFDTY-LRNA-LD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp GGGGTTCSCEE-EEEE-CHHHHHHHHHT-TTGG-GG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred cccHHHHhhcc-Cccc-cHHHHHHHHHH-hHcc-CC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 011110 1000 0011 12455666654 3322 22 68999999999 999999999999 999999887766
Q ss_pred HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376 187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 187 ~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 232 (239)
.. +||++..+ ..||+| +|++|+++ +.|+++++
T Consensus 233 ~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 233 LY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp GG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred HH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence 42 29998876 479999 99999997 78998886
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.93 E-value=3e-28 Score=213.70 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=106.9
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCc
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 123 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 123 (239)
+++++||.+++|++++|+||||||||||+++|+|+++|++|.|.+++... ..... ...
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e-----------~~~~~---------~~~-- 217 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE-----------IVFKH---------HKN-- 217 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC-----------CCCSS---------CSS--
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec-----------ccccc---------chh--
Confidence 78999999999999999999999999999999999999999998765320 00000 000
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC
Q 026376 124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 203 (239)
Q Consensus 124 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd 203 (239)
.+++ .. . |||+||++||+||..+|++|++||||+. + ...+++.+..-+.|+|+++|+
T Consensus 218 ---------~i~~---~~-----g--gg~~~r~~la~aL~~~p~ilildE~~~~---e-~~~~l~~~~~g~~tvi~t~H~ 274 (330)
T 2pt7_A 218 ---------YTQL---FF-----G--GNITSADCLKSCLRMRPDRIILGELRSS---E-AYDFYNVLCSGHKGTLTTLHA 274 (330)
T ss_dssp ---------EEEE---EC-----B--TTBCHHHHHHHHTTSCCSEEEECCCCST---H-HHHHHHHHHTTCCCEEEEEEC
T ss_pred ---------EEEE---Ee-----C--CChhHHHHHHHHhhhCCCEEEEcCCChH---H-HHHHHHHHhcCCCEEEEEEcc
Confidence 0000 00 0 8999999999999999999999999982 2 233444454323479999999
Q ss_pred HHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 204 EHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 204 ~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
.+ +...|||+++|.+|......-+.+.+.++
T Consensus 275 ~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~~ 305 (330)
T 2pt7_A 275 GS-SEEAFIRLANMSSSNSAARNIKFESLIEG 305 (330)
T ss_dssp SS-HHHHHHHHHHHHHTSGGGTTSCHHHHHHH
T ss_pred cH-HHHHhhhheehhcCCcccCCCCHHHHHHH
Confidence 98 66689999999988642123344444443
No 74
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.92 E-value=5.4e-25 Score=193.61 Aligned_cols=80 Identities=28% Similarity=0.473 Sum_probs=68.2
Q ss_pred cCCCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcC
Q 026376 142 LQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE 212 (239)
Q Consensus 142 ~~~~~~LSgGqkq------rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d 212 (239)
++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.+.+. +.|||+||||.+ +..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence 4678899999999 678888999999999999999999999999988887653 459999999976 456899
Q ss_pred eEEEEe--CCeE
Q 026376 213 ELWVVS--EGKA 222 (239)
Q Consensus 213 ~i~~l~--~G~i 222 (239)
++++|+ +|..
T Consensus 322 ~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 HVIRISLENGSS 333 (339)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCcc
Confidence 999885 4543
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.92 E-value=3.1e-27 Score=204.83 Aligned_cols=179 Identities=17% Similarity=0.129 Sum_probs=129.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------eEEEEEeeccCCCCCC
Q 026376 45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDL 107 (239)
Q Consensus 45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~ 107 (239)
+.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++. ....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCH
Confidence 36789999999999999999999999999999999999999987542 13788888753 0222
Q ss_pred CCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHH
Q 026376 108 SSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVE 184 (239)
Q Consensus 108 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~ 184 (239)
..+....+... ....+ ..+++.+|+.+ ..++++.+|| |||++||||++.+|+ +|+|| ||+|||+....
T Consensus 169 ~~~v~e~l~~~~~~~~d----~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~ 239 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 239 (302)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHcCCc----chHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence 22222222210 01111 12456677753 3456678899 999999999999999 99999 99999987643
Q ss_pred HHHHHHh-hcCCEEEEEec---------CHHHHhhhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376 185 ALIQGLV-LFQGGILMVSH---------DEHLISGSVEELWVVSEGKATP--FHGTFHDYKKML 236 (239)
Q Consensus 185 ~l~~~l~-~~~~tii~vsH---------d~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~ 236 (239)
+.+. ..+.|+|++|| .++.+...+..|.++..|+... ..-+++.|.+++
T Consensus 240 ---~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~l 300 (302)
T 3b9q_A 240 ---REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 300 (302)
T ss_dssp ---HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHH
T ss_pred ---HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHH
Confidence 3344 45779999999 5667777888999999997421 124667776554
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=4.2e-27 Score=213.49 Aligned_cols=180 Identities=13% Similarity=0.148 Sum_probs=131.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 91 (239)
++++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|...+.
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999996356799999 999999999999999999999999999999999999987654
Q ss_pred ----eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCC-cccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT-GNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
..++|++|.... .....+...+... ..+.....+-. ..+.+ .+..||+|| ||++|| +.+|
T Consensus 209 ~~l~r~i~~v~q~~~~-~~~~~~v~~~~~~---------~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvslA---l~~p 273 (438)
T 2dpy_A 209 DGRARSVVIAAPADVS-PLLRMQGAAYATR---------IAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIALA---IGEP 273 (438)
T ss_dssp HHHHTEEEEEECTTSC-HHHHHHHHHHHHH---------HHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHHHH---TTCC
T ss_pred cccCceEEEEECCCCC-HHHHHHHHHHHHH---------HHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHHHH---hCCC
Confidence 247899985321 0001111111110 00111111100 01112 357899999 999999 8889
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhcC------C------EEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLFQ------G------GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~~------~------tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
++ |+|||+.....+.+.+.+.+ + ||+++|||++ ..+||++++|.+|+++ ..+++.+
T Consensus 274 ~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv-l~~~~~~ 341 (438)
T 2dpy_A 274 PA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV-LSRRLAE 341 (438)
T ss_dssp CC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE-ECHHHHH
T ss_pred cc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE-EeCCHHH
Confidence 88 99999999999888886541 3 8999999998 6789999999999986 5565544
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.92 E-value=8.6e-25 Score=193.48 Aligned_cols=85 Identities=18% Similarity=0.072 Sum_probs=76.0
Q ss_pred CCCC-CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcC
Q 026376 143 QPMY-TLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 212 (239)
Q Consensus 143 ~~~~-~LSgGqkqrv~laral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d 212 (239)
+++. .||||||||++||++|+ .+|+||||||||++||+..+..+++.+.+...|+|++||. +. .||
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA 335 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence 4566 79999999999999999 8999999999999999999999999998876789999995 33 799
Q ss_pred eEEEEeCCeEEeeCCChhHH
Q 026376 213 ELWVVSEGKATPFHGTFHDY 232 (239)
Q Consensus 213 ~i~~l~~G~i~~~~g~~~~~ 232 (239)
++++|++|++. ..|+++++
T Consensus 336 ~i~~l~~G~i~-~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFT-PVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEE-ECCCTTTS
T ss_pred EEEEEECCEEE-ecCCHHHH
Confidence 99999999997 67887764
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.92 E-value=3.7e-28 Score=201.27 Aligned_cols=166 Identities=15% Similarity=0.141 Sum_probs=105.1
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC-----------ceEEEEEeeccCCCCCCC--C
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA-----------KVRIAVFSQHHVDGLDLS--S 109 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~-----------~~~~~~~~q~~~~~~~~~--~ 109 (239)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+.. ...++|++|++....... .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 3689999999999999999999999999999999998 6 8887621 123566666532100000 0
Q ss_pred cHHHH--HHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH-----HHHhccCCCEEEEeCCCCCCCHHH
Q 026376 110 NPLLY--MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF-----AKITFKKPHIILLDEPSNHLDLDA 182 (239)
Q Consensus 110 ~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l-----aral~~~p~llllDEPt~~LD~~~ 182 (239)
..+.+ +.....+.....+.++++...+. ..+ .+|||||+||++| |++|+.+|++++|||||+++|..+
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~ 162 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTEN 162 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCC
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCC
Confidence 00000 00000112344567777764431 222 5899999999999 899999999999999999999877
Q ss_pred HHHHHHHHhh----------cCCEEEEEecCHHHHhhhcCeEEE
Q 026376 183 VEALIQGLVL----------FQGGILMVSHDEHLISGSVEELWV 216 (239)
Q Consensus 183 ~~~l~~~l~~----------~~~tii~vsHd~~~~~~~~d~i~~ 216 (239)
...+.+.+.+ ...+.|+++||++.+...+++++.
T Consensus 163 ~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 163 QEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 6666555532 234688899999888877777654
No 79
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.92 E-value=1.2e-25 Score=221.50 Aligned_cols=165 Identities=16% Similarity=0.211 Sum_probs=116.7
Q ss_pred CCeEEEEe-----eEEEcCCCCceeeeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceE
Q 026376 26 PPIISFSD-----ASFGYPGGPILFKNLNFGIDL-------DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 93 (239)
Q Consensus 26 ~~~l~~~~-----l~~~y~~~~~~l~~isl~i~~-------Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~ 93 (239)
.++|+++| |++.|.++..+++|++|++.+ |++++|+||||||||||||+| |++.+- ..
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aq 817 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQ 817 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------HT
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------hh
Confidence 45799999 999995456799999999987 999999999999999999999 998752 12
Q ss_pred EE-EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376 94 IA-VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172 (239)
Q Consensus 94 ~~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD 172 (239)
+| |+||+.. .+.+.... +..+|+.+.. .+..+++|+++++ +++|++++.+|+++|||
T Consensus 818 iG~~Vpq~~~-~l~v~d~I-------------------~~rig~~d~~-~~~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 818 MGCYVPAEVC-RLTPIDRV-------------------FTRLGASDRI-MSGESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp TTCCEESSEE-EECCCSBE-------------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred eeEEeccCcC-CCCHHHHH-------------------HHHcCCHHHH-hhchhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 44 7888642 11111111 1234443322 2345678887765 99999999999999999
Q ss_pred CCCCCCCHHHH----HHHHHHHhhc-CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 173 EPSNHLDLDAV----EALIQGLVLF-QGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 173 EPt~~LD~~~~----~~l~~~l~~~-~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|||+|+|+... ..+++.+.+. +.++|++||+.+++..+||++.++ +|++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 99999998753 2455666554 779999999999999999998876 47765
No 80
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.92 E-value=4.3e-27 Score=207.58 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=126.8
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------------
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------- 92 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------- 92 (239)
++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|...+..
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4689999999996456789999 9999999999999999999999999999999999988765421
Q ss_pred ----EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376 93 ----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168 (239)
Q Consensus 93 ----~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l 168 (239)
.+.+++|... .....+.... ....+.+.+...+-.-...-..+..||+|| ||+++| +.+|++
T Consensus 123 ~~~~~v~~~~~~~~-------~~~~r~~~~~---~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 123 TLSKCVLVVTTSDR-------PALERMKAAF---TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp HHTTEEEEEECTTS-------CHHHHHHHHH---HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred hhhceEEEEECCCC-------CHHHHHHHHH---HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc
Confidence 1233333210 0111100000 000011111111110000113568999999 899999 688887
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc-----CC-----EEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376 169 ILLDEPSNHLDLDAVEALIQGLVLF-----QG-----GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231 (239)
Q Consensus 169 lllDEPt~~LD~~~~~~l~~~l~~~-----~~-----tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 231 (239)
|+|||+.....+.+.+.+. +. ||+++|||++ ..+||+++.+.+|+++ .+++.++
T Consensus 189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Iv-l~~~l~~ 252 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIV-LTRELAE 252 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEE-BCHHHHT
T ss_pred ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEE-EeCCHHH
Confidence 9999999999988888653 33 7999999998 6789999999999997 5665543
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.91 E-value=3.2e-28 Score=211.94 Aligned_cols=176 Identities=14% Similarity=0.050 Sum_probs=127.9
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFG-----------------------IDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 83 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~-----------------------i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~ 83 (239)
..|++++|++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+.
T Consensus 42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 3689999999993 566777764 89999999999999999999999999999987
Q ss_pred eeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHh--C--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376 84 GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC--F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 158 (239)
Q Consensus 84 G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 158 (239)
|. ..+++++|+.... . .+...+.... + + ..+.+.+.++++.++ .+ ..+.++..|||||+||+++
T Consensus 119 G~------~~v~~v~qd~~~~--~-~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 119 HH------PRVDLVTTDGFLY--P-NAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TC------CCEEEEEGGGGBC--C-HHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEETTTTEEEEE
T ss_pred CC------CeEEEEecCccCC--c-ccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC-cccCCcccCChhhhhhhhh
Confidence 64 4589999986421 1 1333332111 0 0 123456778888887 33 3345678999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH-hhhcCeEEEEeCCe
Q 026376 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI-SGSVEELWVVSEGK 221 (239)
Q Consensus 159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~-~~~~d~i~~l~~G~ 221 (239)
|++++.+|+|||||||+..+|+.. ..+.+.-..+|+|+|+.+.. .+..+|.+.+.++.
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998522 12333334578888888764 34456665555543
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.91 E-value=2.2e-25 Score=206.66 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=122.5
Q ss_pred eEEEEeeEEEcCCCCceeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376 28 IISFSDASFGYPGGPILFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~i-sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
.+++++++..|++ |+.+ +..|.+|++++|+||||||||||+++++|...|. |+ ..+.+.+|+...
T Consensus 257 ~~~~~~l~~g~~~----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~~--- 322 (525)
T 1tf7_A 257 RSSNVRVSSGVVR----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------RAILFAYEESRA--- 322 (525)
T ss_dssp CCCCCEECCSCHH----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCHH---
T ss_pred ccccceeecChHH----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCHH---
Confidence 4566777765532 2322 4599999999999999999999999999999885 43 123455554310
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH-----
Q 026376 107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD----- 181 (239)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~----- 181 (239)
...... ... +.+. .+ +...|+. ...+.++.+|||||+||+++|+++..+|++||+| ||++||..
T Consensus 323 ---~l~~~~-~~~-g~~~---~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~ 391 (525)
T 1tf7_A 323 ---QLLRNA-YSW-GMDF---EE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNA 391 (525)
T ss_dssp ---HHHHHH-HTT-SCCH---HH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHH
T ss_pred ---HHHHHH-HHc-CCCH---HH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHH
Confidence 111111 111 2222 22 2234543 2445677899999999999999999999999999 99999998
Q ss_pred HHHHHH---HHHhhcCCEEEEEecCH----------HHHhhhcCeEEEEeCCe
Q 026376 182 AVEALI---QGLVLFQGGILMVSHDE----------HLISGSVEELWVVSEGK 221 (239)
Q Consensus 182 ~~~~l~---~~l~~~~~tii~vsHd~----------~~~~~~~d~i~~l~~G~ 221 (239)
.+..+. +.+++.+.|||+|||+. ..+..+||++++|++|+
T Consensus 392 ~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 392 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 666554 44556678999999999 78888999999998876
No 83
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=3.5e-28 Score=199.49 Aligned_cols=163 Identities=10% Similarity=0.007 Sum_probs=95.4
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-------CceEEEEEeeccCCCCC--CCCcHH
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-------AKVRIAVFSQHHVDGLD--LSSNPL 112 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-------~~~~~~~~~q~~~~~~~--~~~~~~ 112 (239)
..+++| .+|++|++++|+||||||||||+|+|+|+++...+.+... ....++|++|++..... ...+..
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 356777 7999999999999999999999999999986332221111 01246788876421000 000000
Q ss_pred HH--HHH--hCCCCcHHH----HHHH------HHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376 113 LY--MMR--CFPGVPEQK----LRAH------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178 (239)
Q Consensus 113 ~~--~~~--~~~~~~~~~----~~~~------l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L 178 (239)
.. ... ......... +.+. ++.+++. ...++.+..|| +|+.+|++++|||||+++
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l 154 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQARLIGR 154 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence 00 000 000111222 2222 3334442 23345566777 899999999999999998
Q ss_pred ----CHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 179 ----DLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 179 ----D~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
|+..+..+.+.+.+ .+.|+|+||||++++..+||++++|.
T Consensus 155 ~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 155 GTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 66677766655543 35699999999999999999999884
No 84
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.91 E-value=7.7e-26 Score=200.04 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=128.8
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------eEEEEEeeccCCCCCCC
Q 026376 46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDLS 108 (239)
Q Consensus 46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~~ 108 (239)
.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++.. ....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-CCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-cChh
Confidence 4689999999999999999999999999999999999999987542 137888887520 1221
Q ss_pred CcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHH
Q 026376 109 SNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEA 185 (239)
Q Consensus 109 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~~ 185 (239)
.+....+... ....+ ..+++.+|+.+ ..++.+.+|| |||++||||++.+|+ +|+|| ||+|||+....
T Consensus 227 ~tv~e~l~~~~~~~~d----~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~- 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 296 (359)
T ss_dssp HHHHHHHHHHHHTTCS----EEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred hhHHHHHHHHHhCCCH----HHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-
Confidence 2222222210 01111 12456677754 3456678899 999999999999999 99999 99999987653
Q ss_pred HHHHHh-hcCCEEEEEec---------CHHHHhhhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376 186 LIQGLV-LFQGGILMVSH---------DEHLISGSVEELWVVSEGKATP--FHGTFHDYKKML 236 (239)
Q Consensus 186 l~~~l~-~~~~tii~vsH---------d~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~ 236 (239)
+.+. ..+.|+|++|| .+..+...+..|..+..|+... ..-+++.|.+++
T Consensus 297 --~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~l 357 (359)
T 2og2_A 297 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 357 (359)
T ss_dssp --HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHH
T ss_pred --HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHH
Confidence 3343 45789999999 4667777788999999997421 124667776654
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.89 E-value=1.3e-23 Score=180.86 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=106.1
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce-eEEe-cCce-------EEEEEeeccCCCCCCCCcHHH
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVFR-SAKV-------RIAVFSQHHVDGLDLSSNPLL 113 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G-~i~~-~~~~-------~~~~~~q~~~~~~~~~~~~~~ 113 (239)
.+|+++++.+.+|++++|+||||||||||+++|+|...|++| .|.+ .... ++.++.+. ..+......
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~----~~~~~~~~l 98 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR----VRLRQSDSL 98 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTT----CCGGGCHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcC----CChhhcccc
Confidence 478999999999999999999999999999999999999877 5532 2110 00000000 000000000
Q ss_pred HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C---CCH-HHHHH
Q 026376 114 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ-KSRVAFAKITFKKPHIILLDEPSN---H---LDL-DAVEA 185 (239)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kqrv~laral~~~p~llllDEPt~---~---LD~-~~~~~ 185 (239)
...........+.+.++++...+ .. ...+..+|.+| +||+. |+++..+|+++|+||||+ + +|. .....
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l--~i-~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~ 174 (296)
T 1cr0_A 99 KREIIENGKFDQWFDELFGNDTF--HL-YDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDN 174 (296)
T ss_dssp HHHHHHHTHHHHHHHHHHSSSCE--EE-ECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhccCCE--EE-ECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHH
Confidence 00000000001122333333233 12 22346789999 66666 999999999999999999 5 454 45555
Q ss_pred HHHHHh----hcCCEEEEEecCH--H--------------------HHhhhcCeEEEEeCCeE
Q 026376 186 LIQGLV----LFQGGILMVSHDE--H--------------------LISGSVEELWVVSEGKA 222 (239)
Q Consensus 186 l~~~l~----~~~~tii~vsHd~--~--------------------~~~~~~d~i~~l~~G~i 222 (239)
+.+.|+ +.+.|||++||+. + .+.++||+|++|++|+.
T Consensus 175 i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 175 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 655553 3477999999995 4 77889999999998864
No 86
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.89 E-value=3.5e-24 Score=208.93 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=109.1
Q ss_pred CeEEEEeeEEEcC----CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH--------hcCcCCCceeEEecCceEE
Q 026376 27 PIISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--------AGELQPSSGTVFRSAKVRI 94 (239)
Q Consensus 27 ~~l~~~~l~~~y~----~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l--------~Gl~~p~~G~i~~~~~~~~ 94 (239)
..+.+++...-+- +...+++|++|++.+|++++|+||||||||||||++ +|...|.++.. +
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~ 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------V 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------E
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------c
Confidence 3577777543331 234688999999999999999999999999999999 56555543321 1
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEe
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLD 172 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral--~~~p~llllD 172 (239)
+.+ .+++..+|+.+ .....+|+|++++..+|+++ +.+|+++|||
T Consensus 703 ~~~------------------------------d~i~~~ig~~d----~l~~~lStf~~e~~~~a~il~~a~~~sLlLLD 748 (934)
T 3thx_A 703 SIV------------------------------DCILARVGAGD----SQLKGVSTFMAEMLETASILRSATKDSLIIID 748 (934)
T ss_dssp ECC------------------------------SEEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred hHH------------------------------HHHHHhcCchh----hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEe
Confidence 100 01222344332 22356888888888888888 9999999999
Q ss_pred CCCCCCCHHHHHHH----HHHHhh-cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376 173 EPSNHLDLDAVEAL----IQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKAT 223 (239)
Q Consensus 173 EPt~~LD~~~~~~l----~~~l~~-~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~ 223 (239)
|||+|+|+.....+ ++.+.+ .+.++|++||+.+.. .+||++..+.+|++.
T Consensus 749 Ep~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 749 ELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp SCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 99999999865544 555654 477999999997766 589999889988875
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.89 E-value=5.9e-25 Score=186.85 Aligned_cols=141 Identities=18% Similarity=0.198 Sum_probs=102.0
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLD 106 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~ 106 (239)
+++++++++. .+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|...+.. +.|++|....
T Consensus 5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~--- 73 (261)
T 2eyu_A 5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS--- 73 (261)
T ss_dssp -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS---
T ss_pred CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce---
Confidence 3466777642 4789999 9999999999999999999999999999998 9999765431 2232222100
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376 107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186 (239)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l 186 (239)
. ... ..+++.. ..| |++||++|..+|++|++|||| |+++...+
T Consensus 74 -----------~---v~q-------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 74 -----------I---VNQ-------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp -----------E---EEE-------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred -----------e---eeH-------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 0 000 1233321 122 899999999999999999999 99987776
Q ss_pred HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 187 ~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
++.. ..+.+|+++||+.+ +...|||++.|.
T Consensus 117 l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 117 LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HHHH-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred HHHH-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 6654 45779999999987 455778765553
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.89 E-value=1.7e-26 Score=214.19 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=109.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HhcCcCCCceeEEecCce----------EE
Q 026376 28 IISFSDASFGYPGGPILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKL--IAGELQPSSGTVFRSAKV----------RI 94 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl-~i~~Ge~~~iiG~NGsGKSTLl~~--l~Gl~~p~~G~i~~~~~~----------~~ 94 (239)
+++.+++.+.. ++..+|+++|| .|++|++++|+||||||||||+++ ++|+.+|++|.|++++.. .+
T Consensus 12 ~~~~~~~~~~~-~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~ 90 (525)
T 1tf7_A 12 NSEHQAIAKMR-TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSF 90 (525)
T ss_dssp --CCSSCCEEC-CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGG
T ss_pred Ccccccccccc-CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHc
Confidence 45666665544 55679999999 999999999999999999999999 789999999999876531 24
Q ss_pred EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc-cCCCEEEEeC
Q 026376 95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-KKPHIILLDE 173 (239)
Q Consensus 95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~-~~p~llllDE 173 (239)
+|++|++.....+.. . .... . .+..++++ .+.-++ +.-.++.+|. .+|++++|||
T Consensus 91 g~~~q~~~~~~~l~~------~-~~~~-~-~~~~~~l~--------------~~~l~~-~~~~~~~~LS~g~~~~lilDe 146 (525)
T 1tf7_A 91 GWDLAKLVDEGKLFI------L-DASP-D-PEGQEVVG--------------GFDLSA-LIERINYAIQKYRARRVSIDS 146 (525)
T ss_dssp TCCHHHHHHTTSEEE------E-ECCC-C-SSCCSCCS--------------SHHHHH-HHHHHHHHHHHHTCSEEEEEC
T ss_pred CCChHHhhccCcEEE------E-ecCc-c-cchhhhhc--------------ccCHHH-HHHHHHHHHHHcCCCEEEECC
Confidence 444444321000000 0 0000 0 00001111 222222 2333344442 4689999999
Q ss_pred CCCC-----CCHHHHHHHHHHH---hhcCCEEEEEecCHHHH---------hhhcCeEEEEeC
Q 026376 174 PSNH-----LDLDAVEALIQGL---VLFQGGILMVSHDEHLI---------SGSVEELWVVSE 219 (239)
Q Consensus 174 Pt~~-----LD~~~~~~l~~~l---~~~~~tii~vsHd~~~~---------~~~~d~i~~l~~ 219 (239)
||+. ||+..+..+.+.+ ++.+.|||++||+++++ ..+||+|++|++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 9984 5888877666554 45578999999999884 556999999988
No 89
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=3.3e-25 Score=189.27 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=86.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEEEEeeccCCCC--CCCCcHHHHHHHhCCCCcHHH
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQHHVDGL--DLSSNPLLYMMRCFPGVPEQK 126 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~~~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 126 (239)
.++|+||||||||||+|+|+|+..|++|+|.+++. ..+++++|+..... ++..++... .........+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g-~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG-DQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh-hhcccHHHHHH
Confidence 48999999999999999999999999999987653 46899999753211 111121110 00011112233
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 026376 127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH 205 (239)
Q Consensus 127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~ 205 (239)
+.+++. ....+..+.+||||||||+++|||++. ++++|||+++||+.. ..+++.+.+. .+||+|.|..+
T Consensus 83 i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 83 IEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHhc-CcEEEEEeccc
Confidence 444443 123445678999999999999999886 999999999999987 4456667665 78888887654
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=1.2e-22 Score=197.43 Aligned_cols=105 Identities=28% Similarity=0.389 Sum_probs=91.5
Q ss_pred HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEec
Q 026376 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSH 202 (239)
Q Consensus 128 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsH 202 (239)
.+.|..+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+....++++.|+++ +.|||+|||
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3466778886544578999999999999999999999877 99999999999999999988887654 569999999
Q ss_pred CHHHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376 203 DEHLISGSVEELWVV------SEGKATPFHGTFHDYKK 234 (239)
Q Consensus 203 d~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 234 (239)
|++++.. ||+|++| ++|+++ +.|+++++.+
T Consensus 525 d~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~ 560 (916)
T 3pih_A 525 DEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLK 560 (916)
T ss_dssp CHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHH
T ss_pred CHHHHHh-CCEEEEEcCCcccCCCEEE-Eeechhhhhc
Confidence 9999875 9999999 889987 7899998864
No 91
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.88 E-value=3.1e-24 Score=180.33 Aligned_cols=161 Identities=15% Similarity=0.125 Sum_probs=96.1
Q ss_pred CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-CceEEEEEeeccCCCCCCCCcHHHHHH--
Q 026376 40 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AKVRIAVFSQHHVDGLDLSSNPLLYMM-- 116 (239)
Q Consensus 40 ~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~-- 116 (239)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ....++|++|+... ..+ +......
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~-~~l--~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFY-KVL--TAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGB-CCC--CHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCc-ccc--CHhHhhhhh
Confidence 4457899999999999999999999999999999999976 433221 12358899998521 122 2222211
Q ss_pred Hh-CC-----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376 117 RC-FP-----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190 (239)
Q Consensus 117 ~~-~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 190 (239)
.. +. ..+.+.+.+.++.+. . ....++..||+||+||+++ ++++.+|+++|+|||....+..- .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l~--~-~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l----~~-- 152 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNIV--E-GKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI----RD-- 152 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHHH--T-TCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH----HT--
T ss_pred ccCCCCCCcccccHHHHHHHHHHHH--C-CCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHH----HH--
Confidence 11 11 012234455565442 1 2345678999999999988 68889999999999998887641 11
Q ss_pred hhcCCEEEEEecC-HHHHhhhcCeEEEEeCCe
Q 026376 191 VLFQGGILMVSHD-EHLISGSVEELWVVSEGK 221 (239)
Q Consensus 191 ~~~~~tii~vsHd-~~~~~~~~d~i~~l~~G~ 221 (239)
..+.+|+++||+ ......+++++ ++|+
T Consensus 153 -~~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 153 -MFHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp -TCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred -hcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 135689999997 44445555544 5564
No 92
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.87 E-value=2.2e-22 Score=156.97 Aligned_cols=81 Identities=25% Similarity=0.435 Sum_probs=70.5
Q ss_pred ccCCCCCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhc
Q 026376 141 ALQPMYTLSGGQKSRVAFA------KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSV 211 (239)
Q Consensus 141 ~~~~~~~LSgGqkqrv~la------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~ 211 (239)
.++++.+||||||||++|| |||+.+|+++||||||++||+.++..+.+.+.+. +.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 3568899999999999876 8999999999999999999999999998888654 469999999995 56799
Q ss_pred CeEEEE--eCCeE
Q 026376 212 EELWVV--SEGKA 222 (239)
Q Consensus 212 d~i~~l--~~G~i 222 (239)
|++++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.87 E-value=5.8e-23 Score=197.08 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=107.0
Q ss_pred CeEEEEeeEEEcC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEecCceEEEEEeeccCC
Q 026376 27 PIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVD 103 (239)
Q Consensus 27 ~~l~~~~l~~~y~--~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~ 103 (239)
..+.+++...-.- ++..+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+.......+++++|-.
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~-- 623 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY-- 623 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE--
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh--
Confidence 3577777632220 235689999999 99999999999999999999999874 677875432233344444311
Q ss_pred CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCC---CCCC
Q 026376 104 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHL 178 (239)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral--~~~p~llllDEP---t~~L 178 (239)
..++..+. ....+|+|+++++.+|+++ +.+|+++||||| |++|
T Consensus 624 ----------------------------~~~~~~d~----l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l 671 (765)
T 1ewq_A 624 ----------------------------TRIGASDD----LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671 (765)
T ss_dssp ----------------------------EECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred ----------------------------ccCCHHHH----HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence 11111111 1235799999999999999 999999999999 9999
Q ss_pred CHHHH-HHHHHHHhhcCCEEEEEecCHHHHh
Q 026376 179 DLDAV-EALIQGLVLFQGGILMVSHDEHLIS 208 (239)
Q Consensus 179 D~~~~-~~l~~~l~~~~~tii~vsHd~~~~~ 208 (239)
|..+. ..+++.+.+.+.++|++||+.++..
T Consensus 672 D~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 672 DGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99876 4688888777789999999998864
No 94
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.87 E-value=5.1e-24 Score=172.82 Aligned_cols=141 Identities=21% Similarity=0.197 Sum_probs=98.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC---------ceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHH
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ 125 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~---------~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (239)
|++++|+||||||||||+++|+|+++ ++| |.+++ ...++|++|+.. .. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~-g~---~~~-------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS-GT---RGP-------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT-SC---EEE--------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc-cc---eeh--------------
Confidence 78999999999999999999999999 889 76543 235788888751 10 000
Q ss_pred HHHHHHHhcCCCc------ccccCCCCCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhc
Q 026376 126 KLRAHLGSFGVTG------NLALQPMYTLSGGQKSRV-AFAK---ITFKKPHIILLDE--PSNHLDLDAVEALIQGLVLF 193 (239)
Q Consensus 126 ~~~~~l~~~~l~~------~~~~~~~~~LSgGqkqrv-~lar---al~~~p~llllDE--Pt~~LD~~~~~~l~~~l~~~ 193 (239)
+..+++.. ....++...+|+|||+++ ++++ |++.+|++||+|| |++.+|......+.+.+.+.
T Consensus 61 -----l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 61 -----LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp -----EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred -----hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 00111110 122344567999999988 4454 6899999999999 99999999888888888765
Q ss_pred CCEEE---EEecCH--HHHhhhcCeEEEEeCCeEEe
Q 026376 194 QGGIL---MVSHDE--HLISGSVEELWVVSEGKATP 224 (239)
Q Consensus 194 ~~tii---~vsHd~--~~~~~~~d~i~~l~~G~i~~ 224 (239)
..+|+ .||||. .++++++ .+++|++..
T Consensus 136 ~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~ 167 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVEEIR----NRKDVKVFN 167 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEE
T ss_pred CcEEEEEeecCCCCchHHHHHHe----ecCCcEEEE
Confidence 44443 445987 4555444 446666643
No 95
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.87 E-value=1e-22 Score=198.26 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=99.9
Q ss_pred eEEEEeeEEEc-----C-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeec
Q 026376 28 IISFSDASFGY-----P-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQH 100 (239)
Q Consensus 28 ~l~~~~l~~~y-----~-~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~ 100 (239)
.+.+++...-+ + ++..+++|+||++++|++++|+||||||||||||+|+++.-.. .|.........++++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~--- 716 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV--- 716 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC---
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH---
Confidence 56776653221 1 2456899999999999999999999999999999998643211 111000000001100
Q ss_pred cCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376 101 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180 (239)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~ 180 (239)
..++..+++.+. ..+..+++|+||+|++.|+++ +.+|+++||||||+|||+
T Consensus 717 ---------------------------d~i~~~ig~~d~-l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 717 ---------------------------DGIFTRMGAADN-IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------SEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred ---------------------------HHHHHhCChHHH-HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 012333444332 235568999999999999999 899999999999999999
Q ss_pred HHHHHHH----HHHhh-cCCEEEEEecCHHHHhhhcCe
Q 026376 181 DAVEALI----QGLVL-FQGGILMVSHDEHLISGSVEE 213 (239)
Q Consensus 181 ~~~~~l~----~~l~~-~~~tii~vsHd~~~~~~~~d~ 213 (239)
.....+. +.+.+ .+.+||++|||.+.+. +||+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~ 804 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhh
Confidence 8765554 44433 4779999999988764 5554
No 96
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.86 E-value=2.2e-22 Score=167.92 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=95.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeE--EEeCCCEEEEECCCCCcHHHHHHHHh--cCcCCCceeEEecCceEEEEEeeccCC
Q 026376 28 IISFSDASFGYPGGPILFKNLNF--GIDLDSRIAMVGPNGIGKSTILKLIA--GELQPSSGTVFRSAKVRIAVFSQHHVD 103 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl--~i~~Ge~~~iiG~NGsGKSTLl~~l~--Gl~~p~~G~i~~~~~~~~~~~~q~~~~ 103 (239)
++++++++..+++ |+.+ + .|++|++++|+||||||||||+++|+ |+.++.+|.+++.+...
T Consensus 6 ~~~~~~i~tg~~~----lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~---------- 70 (251)
T 2ehv_A 6 YQPVRRVKSGIPG----FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER---------- 70 (251)
T ss_dssp --CCCEECCSCTT----TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC----------
T ss_pred ccccceeecCCHh----HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC----------
Confidence 4666777766642 3333 2 78999999999999999999999999 76456666555432110
Q ss_pred CCCCCCcHHHHHHHhCCCCcHHHHHH--HHHhcCC-------CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376 104 GLDLSSNPLLYMMRCFPGVPEQKLRA--HLGSFGV-------TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174 (239)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~l-------~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP 174 (239)
........... ....+.... .+..... ............+.++..+...+.+-..+|+++++|||
T Consensus 71 -----~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep 144 (251)
T 2ehv_A 71 -----ARDLRREMASF-GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSI 144 (251)
T ss_dssp -----HHHHHHHHHTT-TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECH
T ss_pred -----HHHHHHHHHHc-CCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccH
Confidence 00000000000 000000000 0000000 00000011223345565555555555689999999999
Q ss_pred CCCCC-----HHHHHHH---HHHHhhcCCEEEEEecCHHHH---------hhhc-CeEEEEe
Q 026376 175 SNHLD-----LDAVEAL---IQGLVLFQGGILMVSHDEHLI---------SGSV-EELWVVS 218 (239)
Q Consensus 175 t~~LD-----~~~~~~l---~~~l~~~~~tii~vsHd~~~~---------~~~~-d~i~~l~ 218 (239)
|++|| +..+..+ ++.+++.+.|||++||+.+.+ ..+| |++++|+
T Consensus 145 ~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99997 4444434 445556688999999999988 6788 9999995
No 97
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.86 E-value=9.7e-22 Score=191.20 Aligned_cols=103 Identities=24% Similarity=0.319 Sum_probs=89.4
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCH
Q 026376 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDE 204 (239)
Q Consensus 130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~--p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~ 204 (239)
.|..+|+.....++++.+|||||+|||+||++|+.+ |++|||||||++||+....++++.|+ +.+.|||+||||+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 467788864336789999999999999999999998 59999999999999999888876654 4578999999999
Q ss_pred HHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376 205 HLISGSVEELWVV------SEGKATPFHGTFHDYKK 234 (239)
Q Consensus 205 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 234 (239)
+++. .||+|++| ++|+++ +.|+++++.+
T Consensus 584 ~~i~-~ADrIi~Lgp~aG~~gG~iv-~~G~~~e~~~ 617 (993)
T 2ygr_A 584 DTIE-HADWIVDIGPGAGEHGGRIV-HSGPYDELLR 617 (993)
T ss_dssp HHHH-TCSEEEEECSSSGGGCCSCC-EEECHHHHHH
T ss_pred HHHH-hCCEEEEecCccccCCCEEE-EeeCHHHhhh
Confidence 9986 69999999 688886 7899999865
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.86 E-value=9.2e-22 Score=190.79 Aligned_cols=103 Identities=25% Similarity=0.298 Sum_probs=89.1
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCH
Q 026376 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDE 204 (239)
Q Consensus 130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~ 204 (239)
.|..+|+.....++++.+|||||+|||+||++|..+| ++|||||||++||+....++++.|+ +.+.|||+||||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4778898643368899999999999999999999984 9999999999999999888876655 4577999999999
Q ss_pred HHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376 205 HLISGSVEELWVV------SEGKATPFHGTFHDYKK 234 (239)
Q Consensus 205 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 234 (239)
+++. .||+|++| ++|+++ +.|+++++.+
T Consensus 567 ~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~~ 600 (972)
T 2r6f_A 567 DTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVMN 600 (972)
T ss_dssp HHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTTT
T ss_pred HHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHHh
Confidence 9986 69999999 688887 7899887753
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.85 E-value=1.9e-21 Score=160.29 Aligned_cols=153 Identities=15% Similarity=0.220 Sum_probs=85.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 130 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (239)
-|++|++++|+||||||||||+++|+|...+..|.....+ ...|+.... ......+..+.... ....+ .+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~--~~i~~~~~~----~~~~~~i~~~~~~~-~~~~~---~~ 90 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG--SVIWIDTEN----TFRPERIREIAQNR-GLDPD---EV 90 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSC--EEEEEESSS----CCCHHHHHHHHHHT-TSCHH---HH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCC--EEEEEECCC----CCCHHHHHHHHHHc-CCCHH---HH
Confidence 6899999999999999999999999996655332211111 112222211 01111122222221 12222 22
Q ss_pred HHhcCCCcccccCCCCCCChHHH-HHHHHHHHhcc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHH
Q 026376 131 LGSFGVTGNLALQPMYTLSGGQK-SRVAFAKITFK-------KPHIILLDEPSNHLDLD-------A-----VEALIQGL 190 (239)
Q Consensus 131 l~~~~l~~~~~~~~~~~LSgGqk-qrv~laral~~-------~p~llllDEPt~~LD~~-------~-----~~~l~~~l 190 (239)
.+.+.+ ....+.+++ +.+..+++++. +|+++++||||+++|+. . ...+++.+
T Consensus 91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 91 LKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp HHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred hhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 332211 123344443 33555555554 99999999999999983 1 11333333
Q ss_pred ----hhcCCEEEEEec----CHHHHhhhcCeEEEEeCCe
Q 026376 191 ----VLFQGGILMVSH----DEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 191 ----~~~~~tii~vsH----d~~~~~~~~d~i~~l~~G~ 221 (239)
++.+.|||++|| +-..+..+||++++|++|+
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 345789999999 5555889999999998764
No 100
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=2.2e-21 Score=187.22 Aligned_cols=103 Identities=26% Similarity=0.281 Sum_probs=89.1
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCH
Q 026376 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDE 204 (239)
Q Consensus 130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l---~~~~~tii~vsHd~ 204 (239)
.|..+|+.....++++.+|||||||||+||++|+.+| .+|||||||++||+....++++.+ ++.+.|||+||||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5778899743368899999999999999999999999 599999999999999988887755 45578999999999
Q ss_pred HHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376 205 HLISGSVEELWVV------SEGKATPFHGTFHDYKK 234 (239)
Q Consensus 205 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 234 (239)
+++. .||+|++| ++|+++ +.|+++++.+
T Consensus 442 ~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKH 475 (842)
T ss_dssp HHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGG
T ss_pred HHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHh
Confidence 9875 69999999 688886 7899988754
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.84 E-value=4.7e-21 Score=157.84 Aligned_cols=164 Identities=12% Similarity=0.037 Sum_probs=103.8
Q ss_pred CceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376 42 PILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120 (239)
Q Consensus 42 ~~~l~~isl-~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 120 (239)
...|+++.. .+.+|++++|+||||||||||++.|++...+.+|.+.+. ..+. ....+.......
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~--------~~~~------~~~~~~~~~~~~- 73 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV--------TTEE------SRDSIIRQAKQF- 73 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE--------ESSS------CHHHHHHHHHHT-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE--------Eccc------CHHHHHHHHHHh-
Confidence 456888887 899999999999999999999999999888777766432 1110 001111111111
Q ss_pred CCcHHHHH-HHHHhcCC-Cccc-ccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCC--CHHHHHHHHHHHh--
Q 026376 121 GVPEQKLR-AHLGSFGV-TGNL-ALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHL--DLDAVEALIQGLV-- 191 (239)
Q Consensus 121 ~~~~~~~~-~~l~~~~l-~~~~-~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~L--D~~~~~~l~~~l~-- 191 (239)
....+... ..+..+.. .... ........|.++.++...+.+...+|+ ++++||||+.+ |+.....+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~ 153 (235)
T 2w0m_A 74 NWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRV 153 (235)
T ss_dssp TCCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHH
T ss_pred cchHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHH
Confidence 00000000 00000000 0000 001123459999999888888888999 99999999888 9877666666554
Q ss_pred --hcCCEEEEEecCH--------HHHhhhcCeEEEEeCC
Q 026376 192 --LFQGGILMVSHDE--------HLISGSVEELWVVSEG 220 (239)
Q Consensus 192 --~~~~tii~vsHd~--------~~~~~~~d~i~~l~~G 220 (239)
+.+.|||++||+. ..+..+||++++|+..
T Consensus 154 ~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 154 LNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 3467999999999 5588899999999754
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.83 E-value=7.8e-24 Score=173.32 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=103.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC---CCcHHHHH
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQKLR 128 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (239)
.++|++++|+||||||||||+++|+|++.| .++|++|+.........+........+. ..+.+++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 578999999999999999999999999876 4788999864321111222222211111 12346677
Q ss_pred HHHHhcCCCcccccCCCCCCChHHH----HHHHHHHHhccCCCEEEEeCCCCC-------CCHHHHHHHHHHHhh----c
Q 026376 129 AHLGSFGVTGNLALQPMYTLSGGQK----SRVAFAKITFKKPHIILLDEPSNH-------LDLDAVEALIQGLVL----F 193 (239)
Q Consensus 129 ~~l~~~~l~~~~~~~~~~~LSgGqk----qrv~laral~~~p~llllDEPt~~-------LD~~~~~~l~~~l~~----~ 193 (239)
++++.+++.+. ..+++.++|+||+ ||+++|++++.+|.++++||||++ ||......+.+.+.+ .
T Consensus 72 ~~l~~~~~~~~-~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLP-VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCC-EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCC-cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 88888887654 4568899999974 788999999999999999999999 898877766666543 3
Q ss_pred CCEEEEEecCH
Q 026376 194 QGGILMVSHDE 204 (239)
Q Consensus 194 ~~tii~vsHd~ 204 (239)
+.|+++++|+.
T Consensus 151 g~t~~~~~~~~ 161 (211)
T 3asz_A 151 GRSLEGVVAQY 161 (211)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67899999985
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.82 E-value=6.2e-23 Score=177.74 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=77.2
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC-cCCCceeEEecC--------ceEEEEEeeccC
Q 026376 32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRSA--------KVRIAVFSQHHV 102 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl-~~p~~G~i~~~~--------~~~~~~~~q~~~ 102 (239)
.||++.| +++.++++++|+| +|+||||||||||+++|+|. ..|++| +...+ ...+++++|...
T Consensus 2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 5789999 4567999999998 99999999999999999998 888888 54322 123567776532
Q ss_pred CC--CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC-CC
Q 026376 103 DG--LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH-LD 179 (239)
Q Consensus 103 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~-LD 179 (239)
.. +.+..++-.... .........+.+.+. ...++++.++|||||||+.+|||++ ++++||||++ ||
T Consensus 74 ~~~~ltv~Dt~g~~~~-~~~~e~~~~l~~~l~------~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld 142 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDA-INCRDCFKTIISYID------EQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLK 142 (301)
T ss_dssp CCEEEEEEEEC------------CTTHHHHHH------HHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCC
T ss_pred cccCcchhhhhhhhhh-cCcHHHHHHHHHHHH------HHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCC
Confidence 11 111111111000 000000001111111 1223567899999999999999986 9999999985 99
Q ss_pred HHHHHHHHHHHhhc-CCEEEEEecCHH
Q 026376 180 LDAVEALIQGLVLF-QGGILMVSHDEH 205 (239)
Q Consensus 180 ~~~~~~l~~~l~~~-~~tii~vsHd~~ 205 (239)
+... .+++.+... +.++|+++||+.
T Consensus 143 ~~~~-~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 143 PLDV-AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHH-HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHH-HHHHHHHhcCCEEEEEEeCCCC
Confidence 9875 455555442 457888999973
No 104
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.81 E-value=3.9e-21 Score=169.95 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=94.9
Q ss_pred EeeEEEcCC-CCceeeeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccC
Q 026376 32 SDASFGYPG-GPILFKNLNF-------GIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHV 102 (239)
Q Consensus 32 ~~l~~~y~~-~~~~l~~isl-------~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~ 102 (239)
.+++++|.. ....|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ +|.|... .++.
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~---------ed~~ 162 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI---------EDPI 162 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE---------ESSC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc---------cCcH
Confidence 345555522 2345566665 67889999999999999999999999999987 5665321 1111
Q ss_pred CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376 103 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182 (239)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~ 182 (239)
.. ..... ... +.... .....++..+ +||+||..+|++|++|||| |.++
T Consensus 163 e~-~~~~~---------~~~--------v~q~~-------~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 163 EF-VHESK---------KCL--------VNQRE-------VHRDTLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp CS-CCCCS---------SSE--------EEEEE-------BTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred Hh-hhhcc---------ccc--------eeeee-------eccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 10 00000 000 00000 0001123222 9999999999999999999 7877
Q ss_pred HHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 183 VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 183 ~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
...+++.. ..|.+||+++|+.+.+ ..|||++.|..
T Consensus 211 ~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 211 IRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred HHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 66656553 4578999999999988 57899887743
No 105
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.81 E-value=6.3e-21 Score=183.89 Aligned_cols=162 Identities=19% Similarity=0.143 Sum_probs=99.9
Q ss_pred CeEEEEeeEEEc----CCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCceEEEEEeecc
Q 026376 27 PIISFSDASFGY----PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHH 101 (239)
Q Consensus 27 ~~l~~~~l~~~y----~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~~~~~~q~~ 101 (239)
..+.+++...-. -++..+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|.........+++++|-
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i- 653 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI- 653 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE-
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH-
Confidence 346676642111 0235689999999 99999999999999999999999997432 2232111111122222221
Q ss_pred CCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 026376 102 VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181 (239)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~ 181 (239)
+..++..+.. ....+++|+++++ ++.+...+.+|+++|||||++|+|+.
T Consensus 654 -----------------------------~~~~~~~d~l-~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 654 -----------------------------FTRVGAADDL-ASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp -----------------------------EEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred -----------------------------HhhCCHHHHH-HhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 1112221111 1233567777765 44445568999999999998888875
Q ss_pred HH----HHHHHHHhh-cCCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376 182 AV----EALIQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKA 222 (239)
Q Consensus 182 ~~----~~l~~~l~~-~~~tii~vsHd~~~~~~~~d~i~~l~~G~i 222 (239)
.. ..+++.+.+ .+.++|++||+.+++. +||++..+.+|++
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEE
Confidence 43 345666666 4779999999998764 8887655555554
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1e-20 Score=153.91 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=95.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-----CCCceeEEecCce----EEEEEe
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFRSAKV----RIAVFS 98 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-----~p~~G~i~~~~~~----~~~~~~ 98 (239)
+|+++|+++.|+ . .++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|++...+.. .+.++
T Consensus 3 ~l~~~~~~~~~~-~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~- 77 (210)
T 1pui_A 3 NLNYQQTHFVMS-A-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV- 77 (210)
T ss_dssp --------CEEE-E-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-
T ss_pred chhhhhhhheee-c-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-
Confidence 589999999994 3 56777 899999999999999999999999999998 7888876532110 01111
Q ss_pred eccCCCCC-----CCC-c----HHHHHHHhC-------------CCCc--HHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 026376 99 QHHVDGLD-----LSS-N----PLLYMMRCF-------------PGVP--EQKLRAHLGSFGVTGNLALQPMYTLSGGQK 153 (239)
Q Consensus 99 q~~~~~~~-----~~~-~----~~~~~~~~~-------------~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 153 (239)
..+ +.. ... . ....+.... .... ..++.+++...++.......++..+|+||+
T Consensus 78 Dt~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~ 155 (210)
T 1pui_A 78 DLP--GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR 155 (210)
T ss_dssp ECC--CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHH
T ss_pred ECc--CCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhH
Confidence 000 110 000 0 011111100 0111 234556677777754333456788999999
Q ss_pred HH-HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376 154 SR-VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 192 (239)
Q Consensus 154 qr-v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 192 (239)
|| +..+++++.+|+++++|||||++|..+...+++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 156 KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 99 8999999999999999999999999999988887765
No 107
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.80 E-value=6.4e-19 Score=140.72 Aligned_cols=93 Identities=17% Similarity=0.263 Sum_probs=76.2
Q ss_pred cCCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEE
Q 026376 142 LQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW 215 (239)
Q Consensus 142 ~~~~~~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~ 215 (239)
.+++..||||||||++||++|+. .|+++||||||++||+.+...+.+.+++. +.++|+|||+.... ..||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence 45678999999999999999974 47999999999999999999999888765 35899999998765 5899998
Q ss_pred EE--eCCeEEeeCCChhHHHHH
Q 026376 216 VV--SEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 216 ~l--~~G~i~~~~g~~~~~~~~ 235 (239)
.+ .+|.......+.+++.+.
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~~ 159 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMKI 159 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHHH
Confidence 55 578765556666665543
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.79 E-value=1.9e-19 Score=153.67 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=95.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC----ceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHH
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 126 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~----~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (239)
.+.+|++++|+||||||||||++.|++... .|.++... ...+.|+..+.. . ......+...........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~----~-~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP----P-TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC----H-HHHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC----H-HHHHHHHHHHHhhcChhh
Confidence 478999999999999999999999998664 35442211 123455543321 0 011111111111233445
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHH---HHHHHHHH----hhcCCEE
Q 026376 127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN--HLDLDA---VEALIQGL----VLFQGGI 197 (239)
Q Consensus 127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~--~LD~~~---~~~l~~~l----~~~~~ti 197 (239)
..++++.+.+.. ..++++..||+||+|++ ++++.+|+++++||||+ ++|... ...+++.| ++.+.||
T Consensus 99 ~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 666778887764 45678899999998765 67888999999999999 999743 24444444 3457899
Q ss_pred EEEecCHHHH
Q 026376 198 LMVSHDEHLI 207 (239)
Q Consensus 198 i~vsHd~~~~ 207 (239)
|+++|+....
T Consensus 175 i~i~H~~~~~ 184 (279)
T 1nlf_A 175 VFLHHASKGA 184 (279)
T ss_dssp EEEEEC----
T ss_pred EEEecCCCcc
Confidence 9999998765
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.76 E-value=9.4e-19 Score=143.21 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=94.6
Q ss_pred ceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCC
Q 026376 43 ILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 121 (239)
Q Consensus 43 ~~l~~isl-~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 121 (239)
..|+.+.. -+.+|++++|+||||||||||++.|++ .+ .+. +.|+..+. .+ ....+....... .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~--------v~~i~~~~--~~--~~~~~~~~~~~~-~ 70 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKK--------VAYVDTEG--GF--SPERLVQMAETR-G 70 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSE--------EEEEESSC--CC--CHHHHHHHHHTT-T
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCc--------EEEEECCC--CC--CHHHHHHHHHhc-C
Confidence 45666654 689999999999999999999999999 22 222 22332221 01 111111111111 1
Q ss_pred CcHHHHHHHHHhcCCCcccccCCCCCCChHH--HHHHHHHHHhccC-CCEEEEeCCCCCCCHHH--------HHHHHHHH
Q 026376 122 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ--KSRVAFAKITFKK-PHIILLDEPSNHLDLDA--------VEALIQGL 190 (239)
Q Consensus 122 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--kqrv~laral~~~-p~llllDEPt~~LD~~~--------~~~l~~~l 190 (239)
...+ ++++.+ .+..+|+++ +++++.+++++.+ |+++++||||+.+|... ...+++.|
T Consensus 71 ~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L 138 (220)
T 2cvh_A 71 LNPE---EALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVL 138 (220)
T ss_dssp CCHH---HHHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHH
T ss_pred CChH---HHhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHH
Confidence 1111 122221 123445554 5688888999986 99999999999999732 23333333
Q ss_pred ----hhcCCEEEEEecCHH-------------HHhhhcCeEEEEeCC
Q 026376 191 ----VLFQGGILMVSHDEH-------------LISGSVEELWVVSEG 220 (239)
Q Consensus 191 ----~~~~~tii~vsHd~~-------------~~~~~~d~i~~l~~G 220 (239)
++.+.+||+++|... .+..+||.+++|+..
T Consensus 139 ~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 139 LWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 344779999999865 567899999999754
No 110
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.76 E-value=1.4e-21 Score=184.01 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=91.9
Q ss_pred CeEEEEeeEEEcCCC-Cceeeee----------eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCc---
Q 026376 27 PIISFSDASFGYPGG-PILFKNL----------NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK--- 91 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~-~~~l~~i----------sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~--- 91 (239)
+.+.++|+++.|++. +.+++.+ +|+++. ++|+|||||||||||++|+|+..| ++|.|.+++.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 358899999999532 2344444 356654 999999999999999999999988 7999876553
Q ss_pred -----------eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 92 -----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 92 -----------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
..++|++|++.. ....+... .+......++... ..+| ++++.++.
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l--~~~~tv~e------------~i~~~~~~~~~~~-------~~~s---~~~i~l~i 141 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEI--SDASEVEK------------EINKAQNAIAGEG-------MGIS---HELITLEI 141 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCC--CCHHHHHT------------THHHHHHHHHCSS-------SCCC---SCCEEEEE
T ss_pred EecCCccccceeEEeeecccccC--CCHHHHHH------------HHHHHHHHhcCCc-------cccc---hHHHHHHh
Confidence 246666765421 11111111 1111112221110 0111 12233444
Q ss_pred HhccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHHH--------hhh----cCeEEEE
Q 026376 161 ITFKKPHIILLDEP------SNHLDLDAVEALIQGLVLF-----QGGILMVSHDEHLI--------SGS----VEELWVV 217 (239)
Q Consensus 161 al~~~p~llllDEP------t~~LD~~~~~~l~~~l~~~-----~~tii~vsHd~~~~--------~~~----~d~i~~l 217 (239)
+....|+++|+||| |++||+.....+.+.+.++ +.+++++|||.+.+ ..+ +..|.++
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence 55668999999999 9999999888877777653 23688999997633 222 2457778
Q ss_pred eCCeEEeeCCCh
Q 026376 218 SEGKATPFHGTF 229 (239)
Q Consensus 218 ~~G~i~~~~g~~ 229 (239)
.++.++ ..|+.
T Consensus 222 TK~Dlv-~~g~~ 232 (608)
T 3szr_A 222 TKPDLV-DKGTE 232 (608)
T ss_dssp ECGGGS-SSSST
T ss_pred cchhhc-CcccH
Confidence 776654 34443
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.1e-19 Score=163.59 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=88.5
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCcee--EEec-----CceEEEEEee
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT--VFRS-----AKVRIAVFSQ 99 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~--i~~~-----~~~~~~~~~q 99 (239)
.+|.++||++.|+ +..+++++||+| +|+|+||||||||+++|+|...|..|. +... ....+++++|
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 4689999999995 567899999998 999999999999999999998765441 1111 0124666666
Q ss_pred ccCCC--CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC---EEEEeCC
Q 026376 100 HHVDG--LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH---IILLDEP 174 (239)
Q Consensus 100 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~---llllDEP 174 (239)
..... +.+..++..... .........+.+.++ ..++.+++||++|||+++.+|+ +|++|||
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDA-VDNSNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp ----CEEEEEEECC------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred cCCcccceeeeechhhhhh-ccchhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 53211 111112111000 000000011212221 1345667789999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 026376 175 S-NHLDLDAVEALIQGLVLFQGGILMVSHDEH 205 (239)
Q Consensus 175 t-~~LD~~~~~~l~~~l~~~~~tii~vsHd~~ 205 (239)
| ++||+... .+++.+.. +.+||+|.|..+
T Consensus 149 t~~~L~~~d~-~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 149 SGHGLKPLDI-EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp -CCSCCHHHH-HHHHHHTT-TSEEEEEEESTT
T ss_pred cccCCCHHHH-HHHHHHhc-cCcEEEEEEccc
Confidence 9 69998874 44555654 567777766443
No 112
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.75 E-value=1.9e-18 Score=159.85 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=68.5
Q ss_pred CCCCCC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEE
Q 026376 143 QPMYTL-SGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 143 ~~~~~L-SgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l 217 (239)
+++..| ||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|++. +.|||+||||++++. .||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 456788 999999999999999999 999999999999999988887777654 679999999999886 69999999
Q ss_pred eCC
Q 026376 218 SEG 220 (239)
Q Consensus 218 ~~G 220 (239)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 554
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.74 E-value=2e-19 Score=155.80 Aligned_cols=169 Identities=15% Similarity=0.078 Sum_probs=99.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------eEEEEEeeccCCCCCCCCcHHHHHH
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDLSSNPLLYMM 116 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~~~~~~~~~~ 116 (239)
+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+++++|.+. .....+....+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 69999999999999999999999999999999987542 13667777642 111111111111
Q ss_pred HhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHh-h
Q 026376 117 RCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLV-L 192 (239)
Q Consensus 117 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~~l~~~l~-~ 192 (239)
... ...+ ..+++..|..+ .....++..++||++||||++.+|+ ++.|| |+++.+... .+..+. .
T Consensus 179 ~~~~~~~d----~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~---~~~~~~~~ 246 (304)
T 1rj9_A 179 AMKARGYD----LLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE---QAKKFHEA 246 (304)
T ss_dssp HHHHHTCS----EEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH---HHHHHHHH
T ss_pred HHHhCCCC----EEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH---HHHHHHHH
Confidence 000 0000 00122233321 1112345566999999999999999 66677 666654332 223333 3
Q ss_pred cCCEEEEEecCHHHHh---------hhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376 193 FQGGILMVSHDEHLIS---------GSVEELWVVSEGKATP--FHGTFHDYKKML 236 (239)
Q Consensus 193 ~~~tii~vsHd~~~~~---------~~~d~i~~l~~G~i~~--~~g~~~~~~~~~ 236 (239)
.+.|+|++||+..... ...-.|..+..|+-.. ..-+++.|.+++
T Consensus 247 ~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~l 301 (304)
T 1rj9_A 247 VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEAL 301 (304)
T ss_dssp HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHH
T ss_pred cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHH
Confidence 4779999999854321 1123566676665310 124666666554
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.73 E-value=1.2e-19 Score=150.26 Aligned_cols=144 Identities=12% Similarity=0.190 Sum_probs=87.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCce-------EEEEEeeccCCCCCCCCcHHHHHHHhC
Q 026376 49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAKV-------RIAVFSQHHVDGLDLSSNPLLYMMRCF 119 (239)
Q Consensus 49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~~-------~~~~~~q~~~~~~~~~~~~~~~~~~~~ 119 (239)
.-..++|++++|+||||||||||+++|+|+.+| ..|.|.+.++. .++|+||++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~------------------ 71 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH------------------ 71 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH------------------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH------------------
Confidence 346789999999999999999999999999986 67877654421 133333321
Q ss_pred CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 026376 120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILM 199 (239)
Q Consensus 120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~ 199 (239)
.........-.+.+.. .....+.|-.+++ +..++..++++||| ||+.+...+.+.+. .+.+|++
T Consensus 72 -----~~f~~~~~~~~f~E~~--~~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i 135 (219)
T 1s96_A 72 -----DEFKEMISRDAFLEHA--EVFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFI 135 (219)
T ss_dssp -----HHHHHHHHTTCEEEEE--EETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEE
T ss_pred -----HHHHHHHhcCHHHHHH--HHHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEE
Confidence 1111111100000000 0001111111222 34455678999999 99999999998876 3669999
Q ss_pred EecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 200 VSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 200 vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
+||+++.+.+ |+ +.+| .++++++.+++
T Consensus 136 ~th~~~~l~~---Rl--~~rG-----~~~~e~i~~rl 162 (219)
T 1s96_A 136 LPPSKIELDR---RL--RGRG-----QDSEEVIAKRM 162 (219)
T ss_dssp ECSSHHHHHH---HH--HTTS-----CSCHHHHHHHH
T ss_pred ECCCHHHHHH---HH--HHcC-----CCCHHHHHHHH
Confidence 9999998875 43 5566 36777776554
No 115
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.73 E-value=4.9e-19 Score=157.46 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=85.7
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 122 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 122 (239)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|...+. +.. ...... ..-.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~---------~~e-~~~~~~--------~~~v 186 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED---------PIE-YVFKHK--------KSIV 186 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES---------SCC-SCCCCS--------SSEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc---------cHh-hhhccC--------ceEE
Confidence 455554 7899999999999999999999999999998 899854221 110 000000 0000
Q ss_pred cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec
Q 026376 123 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH 202 (239)
Q Consensus 123 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsH 202 (239)
.. ..+++. +..| +.+|+++|..+|+++++|||+ |++....+++.. ..+.+|+.++|
T Consensus 187 ~Q-------~~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H 242 (372)
T 2ewv_A 187 NQ-------REVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLH 242 (372)
T ss_dssp EE-------EEBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCC
T ss_pred Ee-------eecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEEC
Confidence 00 012221 2344 469999999999999999999 887766655554 34678999999
Q ss_pred CHHHHhhhcCeEE
Q 026376 203 DEHLISGSVEELW 215 (239)
Q Consensus 203 d~~~~~~~~d~i~ 215 (239)
+.+ +...+||++
T Consensus 243 ~~~-~~~~~~rl~ 254 (372)
T 2ewv_A 243 TNT-AIDTIHRIV 254 (372)
T ss_dssp CCS-HHHHHHHHH
T ss_pred cch-HHHHHHHHH
Confidence 866 455666653
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.72 E-value=3.2e-19 Score=158.05 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=107.3
Q ss_pred EEEeeEEE---cCC-CCcee---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce----
Q 026376 30 SFSDASFG---YPG-GPILF---------KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---- 92 (239)
Q Consensus 30 ~~~~l~~~---y~~-~~~~l---------~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---- 92 (239)
++++++|+ |++ ...+| +++||.+++|++++|+||||||||||+++|+|+++|++|.|.+++..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 66778877 742 12344 99999999999999999999999999999999999999999876421
Q ss_pred -----EEEEEe-eccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376 93 -----RIAVFS-QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166 (239)
Q Consensus 93 -----~~~~~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p 166 (239)
.+++++ |+ ....++++..++..|+.++..+|
T Consensus 217 ~~~~~~v~~v~~q~-------------------------------------------~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 217 PDHPNHVHLFYPSE-------------------------------------------AKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCSSEEEEECC-----------------------------------------------------CCHHHHHHHHTTSCC
T ss_pred cccCCEEEEeecCc-------------------------------------------cccccccccCHHHHHHHHHhcCC
Confidence 011111 00 00012455568899999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376 167 HIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235 (239)
Q Consensus 167 ~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 235 (239)
+.+++|||... ....+++.+..-..|++.++|+.. +...++|+..+..+.......+++.+.++
T Consensus 254 d~~l~~e~r~~----~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~ 317 (361)
T 2gza_A 254 TRILLAELRGG----EAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQNRQGRQLPYEIIRRL 317 (361)
T ss_dssp SEEEESCCCST----HHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTSTTGGGSCHHHHHHH
T ss_pred CEEEEcCchHH----HHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhccccccCCCHHHHHHH
Confidence 99999999862 233345555432347899999976 66678998888766421123344444433
No 117
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.72 E-value=3.5e-18 Score=150.75 Aligned_cols=155 Identities=14% Similarity=0.189 Sum_probs=91.9
Q ss_pred ceeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCc----ee-EEecCceEEEEEeeccCCCCCCCCcHHHH
Q 026376 43 ILFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSS----GT-VFRSAKVRIAVFSQHHVDGLDLSSNPLLY 114 (239)
Q Consensus 43 ~~l~~i-sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~----G~-i~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 114 (239)
..|+.+ ++.|++|++++|+||||||||||++.|++.. +|++ |. |++++.. . +....+..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~---------~----~~~~~i~~ 184 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN---------T----FRPERIRE 184 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS---------C----CCHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC---------C----CCHHHHHH
Confidence 346665 6899999999999999999999999999998 6776 45 4443321 0 00111122
Q ss_pred HHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc-------cCCCEEEEeCCCCCCCHHH-----
Q 026376 115 MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-------KKPHIILLDEPSNHLDLDA----- 182 (239)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~-------~~p~llllDEPt~~LD~~~----- 182 (239)
+.... ..... .+++.+.+. +. .-|.+++|++.++++++ .+|++||+||||+++|+..
T Consensus 185 i~q~~-~~~~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~ 253 (349)
T 1pzn_A 185 IAQNR-GLDPD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGA 253 (349)
T ss_dssp HHHTT-TCCHH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTT
T ss_pred HHHHc-CCCHH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccccc
Confidence 22211 22222 333332221 11 12678999999999998 6899999999999999851
Q ss_pred -------HHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376 183 -------VEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGK 221 (239)
Q Consensus 183 -------~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~ 221 (239)
...++..|. +.+.|||+++|........++.......|+
T Consensus 254 ~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~ 303 (349)
T 1pzn_A 254 LAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGH 303 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcc
Confidence 234444333 347799999998765543333333333444
No 118
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.67 E-value=2.4e-16 Score=139.90 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=66.6
Q ss_pred CCCCCCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCe
Q 026376 143 QPMYTLSGGQKSRV------AFAKITFKK-PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEE 213 (239)
Q Consensus 143 ~~~~~LSgGqkqrv------~laral~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~ 213 (239)
+++..|||||+||+ ++|++++.+ |++|||||||++||+..+..+.+.+.+.. .+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 46679999999988 567899999 99999999999999999999999988753 48999999987 5679999
Q ss_pred EEEEe
Q 026376 214 LWVVS 218 (239)
Q Consensus 214 i~~l~ 218 (239)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.67 E-value=6.5e-16 Score=128.06 Aligned_cols=145 Identities=14% Similarity=0.232 Sum_probs=80.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc--CcCC-----CceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCc
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAG--ELQP-----SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 123 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~G--l~~p-----~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 123 (239)
-+++|++++|+||||||||||++.|++ ..+| ..|.++++.. . . +....+....... ...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~---------~--~--~~~~~~~~~~~~~-g~~ 85 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE---------G--T--FRPERLLAVAERY-GLS 85 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS---------S--C--CCHHHHHHHHHHT-TCC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC---------C--C--cCHHHHHHHHHHc-CCC
Confidence 478999999999999999999999999 5655 3444443321 1 0 0111111111111 112
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCChHHHHH-HHHHHHhc--cCCCEEEEeCCCCCCCHH-------H-----HHHHHH
Q 026376 124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR-VAFAKITF--KKPHIILLDEPSNHLDLD-------A-----VEALIQ 188 (239)
Q Consensus 124 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr-v~laral~--~~p~llllDEPt~~LD~~-------~-----~~~l~~ 188 (239)
.+ ++++.+.+ ....+..+... +.-+..++ .+|+++++|||++.+|.. . ...++.
T Consensus 86 ~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 154 (243)
T 1n0w_A 86 GS---DVLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 154 (243)
T ss_dssp HH---HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHH
T ss_pred HH---HHhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 21 12222111 12345555433 22233333 589999999999999975 2 233333
Q ss_pred HH----hhcCCEEEEEecCHHHHh-------------------hhcCeEEEEeCC
Q 026376 189 GL----VLFQGGILMVSHDEHLIS-------------------GSVEELWVVSEG 220 (239)
Q Consensus 189 ~l----~~~~~tii~vsHd~~~~~-------------------~~~d~i~~l~~G 220 (239)
.| ++.+.|||+++|...... .+||.+++|+.+
T Consensus 155 ~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 155 MLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 33 334789999999765433 389999999865
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.65 E-value=1.2e-19 Score=160.87 Aligned_cols=164 Identities=12% Similarity=0.063 Sum_probs=96.6
Q ss_pred eeeeeEEEeC--CCEEEEECCCCCcHHHHHHHHhcCcCCCc----eeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHh
Q 026376 45 FKNLNFGIDL--DSRIAMVGPNGIGKSTILKLIAGELQPSS----GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC 118 (239)
Q Consensus 45 l~~isl~i~~--Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~----G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 118 (239)
.+.|+++|.+ |++++|+||||||||||+++|+|+++|++ |++++.+.. .. .........+..+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-------~~-~~~~~~~~~~~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-------GG-DEQAMQYSDYPQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-------SS-CTTSSCTTTHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-------CC-CcccCChhHHHHHHHH
Confidence 4679999999 99999999999999999999999999999 776542100 00 0001111111111111
Q ss_pred CCCCcHHHHHHHHHhcCC-CcccccCCCCCCChHHHHHHHHHHHhc-cCCCEEEEeC---CC------CCCCHHHHHHHH
Q 026376 119 FPGVPEQKLRAHLGSFGV-TGNLALQPMYTLSGGQKSRVAFAKITF-KKPHIILLDE---PS------NHLDLDAVEALI 187 (239)
Q Consensus 119 ~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~LSgGqkqrv~laral~-~~p~llllDE---Pt------~~LD~~~~~~l~ 187 (239)
. ...........+.+.+ .....+..+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..+.
T Consensus 230 ~-q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~ 308 (365)
T 1lw7_A 230 H-QRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ 308 (365)
T ss_dssp H-HHHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHH
T ss_pred H-HHHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHH
Confidence 0 0000000011111100 001111223456778888888888774 6999999999 65 589988888887
Q ss_pred HHHh----hcCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376 188 QGLV----LFQGGILMVSHDEHLISGSVEELWVVS 218 (239)
Q Consensus 188 ~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~ 218 (239)
+.+. +.+.+||+++|. ....++++++..++
T Consensus 309 ~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 309 QLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 7763 336789999986 35556777766554
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.64 E-value=2.9e-19 Score=143.60 Aligned_cols=147 Identities=13% Similarity=0.049 Sum_probs=83.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------EEEEEeeccCCCCCCCCcHHHHHHHh---
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAVFSQHHVDGLDLSSNPLLYMMRC--- 118 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~~~~~~q~~~~~~~~~~~~~~~~~~~--- 118 (239)
.+++|++++|+||||||||||+++|+|. |+.|.|.+++.. .++|++|.... ..+....+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQ----NRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHH----HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhh----hHHHHHHHHHHHHH
Confidence 5789999999999999999999999998 788988876531 01222221100 00111111000
Q ss_pred C--CCCcHHHHHHHHHhcCCCcccc--cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 026376 119 F--PGVPEQKLRAHLGSFGVTGNLA--LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 194 (239)
Q Consensus 119 ~--~~~~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 194 (239)
. .... ..+..++..+++. ... +.++..+|+|++|+++++|++..+|+++ +|+.....+.+.+....
T Consensus 79 ~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 79 YAKEGYF-VILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp HHHTSCE-EEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred HhccCCe-EEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 0 0000 0000001111111 111 3345689999999999999999999886 68888777777765442
Q ss_pred --CEEEEEecCHHHHhhhcCeE
Q 026376 195 --GGILMVSHDEHLISGSVEEL 214 (239)
Q Consensus 195 --~tii~vsHd~~~~~~~~d~i 214 (239)
..+++.|++. .+..+++++
T Consensus 149 ~~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 149 AFEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp GGGGGEEECTTC-CTTTTTTTT
T ss_pred cccccEEECCCC-CHHHHHHHH
Confidence 2344445432 233344544
No 122
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.62 E-value=9.1e-16 Score=138.68 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=64.9
Q ss_pred CCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEE
Q 026376 145 MYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV 217 (239)
Q Consensus 145 ~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l 217 (239)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.+.+. +.++|+|||+..++ ..||+++.|
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~~~ 409 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALVGV 409 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEEEE
Confidence 4569999999999999999 589999999999999999999999988765 35899999998765 479999988
Q ss_pred e
Q 026376 218 S 218 (239)
Q Consensus 218 ~ 218 (239)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 5
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.4e-16 Score=143.38 Aligned_cols=169 Identities=14% Similarity=0.059 Sum_probs=96.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCcCCCceeEEe---cC--ceEEEEEeec
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SA--KVRIAVFSQH 100 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~--~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~---~~--~~~~~~~~q~ 100 (239)
.+++++ ++.|+ +.+ |+++||++++|++ ++|+||||||||||+|+|+|+.- .|.... .+ ...++|++|+
T Consensus 16 ~l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 467777 88995 445 9999999999999 99999999999999999999842 121111 01 2358899887
Q ss_pred cCC--CCCCCCcHHHH----HHHhCCC---CcHHHHHHHHHhc-CCCcc---cccCC-----------CCCCChHHHHHH
Q 026376 101 HVD--GLDLSSNPLLY----MMRCFPG---VPEQKLRAHLGSF-GVTGN---LALQP-----------MYTLSGGQKSRV 156 (239)
Q Consensus 101 ~~~--~~~~~~~~~~~----~~~~~~~---~~~~~~~~~l~~~-~l~~~---~~~~~-----------~~~LSgGqkqrv 156 (239)
... .+++..++... -...+.. .-...+.+++... ++... ..+.+ ...|+-.+ +
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 421 11111111000 0000000 0022344445443 33210 01111 12466555 7
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCH
Q 026376 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDE 204 (239)
Q Consensus 157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~ 204 (239)
.++++|..+++++++|||+..|.+.....+.+.+. ..+.+|+.+|.|-
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 99999999999999999999999987776655554 3456788888754
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.58 E-value=1.1e-17 Score=140.06 Aligned_cols=131 Identities=27% Similarity=0.270 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCcCCCceeEEecCc---e----EEEEEeeccCCCCCCCCcHHHHHHH---h--
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVFRSAK---V----RIAVFSQHHVDGLDLSSNPLLYMMR---C-- 118 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~---Gl~~p~~G~i~~~~~---~----~~~~~~q~~~~~~~~~~~~~~~~~~---~-- 118 (239)
++++++|+||||||||||+++|+ |+..|+.|+|.+.+. . .+.+++|+.. +....+....+.. .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSL--LVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 999999999865431 1 1222333321 1111111221111 0
Q ss_pred -----CCC--CcHHHHHHHHHhcCCC-------------cccccCCCCCCChHHHHHHHHHHHh-ccCCCEEEEe----C
Q 026376 119 -----FPG--VPEQKLRAHLGSFGVT-------------GNLALQPMYTLSGGQKSRVAFAKIT-FKKPHIILLD----E 173 (239)
Q Consensus 119 -----~~~--~~~~~~~~~l~~~~l~-------------~~~~~~~~~~LSgGqkqrv~laral-~~~p~llllD----E 173 (239)
..+ ....++..+....... ....++++..||| |+ +|+ +.+|++++|| |
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 001 1222233332211111 1223566788999 55 777 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHhhc
Q 026376 174 PSNHLDLDAVEALIQGLVLF 193 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~ 193 (239)
||++||..+...+.+.+..+
T Consensus 177 P~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHH
Confidence 99999998877777666543
No 125
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.57 E-value=2.4e-20 Score=150.01 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=89.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (239)
|++++|+||||||||||+++|++ |.+|.+++++.. ..++++|... .....+....+. ..+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~--------~~~~~ 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNIT--------DLTVN 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHH--------HHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHH--------HHHHH
Confidence 67999999999999999999997 667887765421 1122222110 000000000000 00111
Q ss_pred HHHhcCCC-------cccccCCCCCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-
Q 026376 130 HLGSFGVT-------GNLALQPMYTL--SGGQKSRVAFAK------ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF- 193 (239)
Q Consensus 130 ~l~~~~l~-------~~~~~~~~~~L--SgGqkqrv~lar------al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~- 193 (239)
.+. -+.. .....+....+ |+|++|++.++. +++.+|+...+|+ ++|+..... .+.+...
T Consensus 69 ~~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 69 FLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp HHH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred HHh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 111 0100 00000111234 788888887777 8888888888884 899877666 6655543
Q ss_pred --CCEEEEEecC-HHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376 194 --QGGILMVSHD-EHLISGSVEELWVVSEGKATPFHGTFHDYK 233 (239)
Q Consensus 194 --~~tii~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 233 (239)
+.++|.+||. ++.+.++||+|+ ++|+++ +.|+++.+.
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~~ 183 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPLE 183 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC-------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCchh
Confidence 4589999999 999999999998 999986 678876653
No 126
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.57 E-value=2.3e-16 Score=125.77 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=70.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 026376 49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 128 (239)
Q Consensus 49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (239)
+|++.+|+.++|+||||||||||+++|++.+.|.+|... .|+ +..... ..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~------------~~~~~~---------~~~~ 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFF------------DTKDLI---------FRLK 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEE------------EHHHHH---------HHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEE------------EHHHHH---------HHHH
Confidence 567788999999999999999999999999887766311 010 000000 0011
Q ss_pred HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 026376 129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVL---FQGGILMVSHDE 204 (239)
Q Consensus 129 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~-~LD~~~~~~l~~~l~~---~~~tii~vsHd~ 204 (239)
.....-. .. -+...+.+|++|+||||++ ++|+.....+.+.+.. .+.++|++||..
T Consensus 84 ~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 84 HLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111000 00 0111234899999999995 8999888777666543 467999999976
Q ss_pred H
Q 026376 205 H 205 (239)
Q Consensus 205 ~ 205 (239)
.
T Consensus 144 ~ 144 (180)
T 3ec2_A 144 L 144 (180)
T ss_dssp S
T ss_pred h
Confidence 3
No 127
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.57 E-value=3.5e-16 Score=140.74 Aligned_cols=142 Identities=24% Similarity=0.283 Sum_probs=88.0
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-----------CCCceeEEecCceEEEEEeeccCCCCCCCCcHHH
Q 026376 45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL 113 (239)
Q Consensus 45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-----------~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~ 113 (239)
-++++|+++.|+.++|+|+|||||||||++|+|.. .|..|.+.+++...+ .+.+.+ .+. ...
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~-~l~Dtp--Gli--~~a-- 219 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF-TLADIP--GII--EGA-- 219 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEE-EEEECC--CCC--CCG--
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceE-EEEecc--ccc--cch--
Confidence 37899999999999999999999999999999983 344444443321111 111211 110 000
Q ss_pred HHHHhCCCCcHH------HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH---
Q 026376 114 YMMRCFPGVPEQ------KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE--- 184 (239)
Q Consensus 114 ~~~~~~~~~~~~------~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~--- 184 (239)
......... ++..++..++++ ..++.+||+|++|++++|++|+..|.++++ |.+|.....
T Consensus 220 ---~~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~ 288 (416)
T 1udx_A 220 ---SEGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK 288 (416)
T ss_dssp ---GGSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred ---hhhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence 000001111 111223334442 356778999999999999999999999999 999986542
Q ss_pred HHHHHHhhcCCEEEEEe-cCH
Q 026376 185 ALIQGLVLFQGGILMVS-HDE 204 (239)
Q Consensus 185 ~l~~~l~~~~~tii~vs-Hd~ 204 (239)
.+.+.+.+.+.+++++| |..
T Consensus 289 ~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 289 ALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp HHHHHHHTTTSCEEECCTTTC
T ss_pred HHHHHHHhcCCeEEEEECCCc
Confidence 23333444455666655 443
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.55 E-value=3e-17 Score=129.14 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=51.4
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376 31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 90 (239)
Q Consensus 31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 90 (239)
.+++++.|+ +..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|...+
T Consensus 10 ~~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 10 DEFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp SHHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred CHHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 356777883 456899999999999999999999999999999999999 9999997655
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=7.7e-18 Score=147.90 Aligned_cols=158 Identities=14% Similarity=0.050 Sum_probs=103.3
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------e
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~ 92 (239)
+++++++++.|+ ...+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+. .
T Consensus 29 ~ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 29 LAESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HHTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HHeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 578899999994 456899999999999999999999999999999999999999999975431 1
Q ss_pred EEEEEeeccCCCCCCC---C-------cHHH-------------------------HHHHh-------CCCCcHHH----
Q 026376 93 RIAVFSQHHVDGLDLS---S-------NPLL-------------------------YMMRC-------FPGVPEQK---- 126 (239)
Q Consensus 93 ~~~~~~q~~~~~~~~~---~-------~~~~-------------------------~~~~~-------~~~~~~~~---- 126 (239)
++++++|++....... . .... .+... ........
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 3455666432111000 0 0000 00000 00000000
Q ss_pred ---HHHHHHhcCCCccccc-CCCCCCChHHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376 127 ---LRAHLGSFGVTGNLAL-QPMYTLSGGQKSRVAFAKITFK------KPHIILLDEPSNHLDLDAVEALIQGLVL 192 (239)
Q Consensus 127 ---~~~~l~~~~l~~~~~~-~~~~~LSgGqkqrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~ 192 (239)
+.+....+.+. ..+ .+...+|+|++|++..|++++. .|++++ ||++|..+...+++.+.+
T Consensus 188 ~~~i~~~~~ivvlN--K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 188 KKGIFELADMIAVN--KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp CTTHHHHCSEEEEE--CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHhccccEEEEE--chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 11222222221 122 1234689999999999999987 688887 999999988888777754
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.52 E-value=7.4e-14 Score=125.05 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=81.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHH--HHhcCcCCCce-----eEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCc
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILK--LIAGELQPSSG-----TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 123 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~--~l~Gl~~p~~G-----~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 123 (239)
-|.+|++++|+||||||||||++ +++++.+++.| .+++++ +. .+....+..+.... ...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~---------E~----~~~~~rl~~~a~~~-gl~ 239 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT---------EG----TFRPVRLVSIAQRF-GLD 239 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES---------SS----CCCHHHHHHHHHHT-TCC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC---------CC----ccCHHHHHHHHHHc-CCC
Confidence 58899999999999999999999 45677777554 333322 11 01111111111111 111
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCChHHH--HHHHHHHHhc--cCCCEEEEeCCCCCCCHHHH------------HHHH
Q 026376 124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQK--SRVAFAKITF--KKPHIILLDEPSNHLDLDAV------------EALI 187 (239)
Q Consensus 124 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk--qrv~laral~--~~p~llllDEPt~~LD~~~~------------~~l~ 187 (239)
.+ .+++.+-+ .....++. +.+.-+..++ .+|+++++|||++.+|.... ..++
T Consensus 240 ~~---~vleni~~---------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il 307 (400)
T 3lda_A 240 PD---DALNNVAY---------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM 307 (400)
T ss_dssp HH---HHHHTEEE---------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHH
T ss_pred hH---hHhhcEEE---------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHH
Confidence 11 12222111 11122333 3333333332 57999999999999996421 2334
Q ss_pred HHH----hhcCCEEEEEecCH-------------------HHHhhhcCeEEEEeCCe
Q 026376 188 QGL----VLFQGGILMVSHDE-------------------HLISGSVEELWVVSEGK 221 (239)
Q Consensus 188 ~~l----~~~~~tii~vsHd~-------------------~~~~~~~d~i~~l~~G~ 221 (239)
+.| ++.+.|||+|+|.. ..+..++|.++.|+.++
T Consensus 308 ~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 308 RALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 433 34578999999982 23467799999998763
No 131
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.51 E-value=1.2e-14 Score=113.14 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=60.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 133 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (239)
+|+.++|+||||||||||+++|++...+ +|. .+.|+..... ...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~~~-----~~~----------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAASM-----PLT----------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETTTS-----CCC-----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHHHh-----hHH-----------------------
Confidence 8999999999999999999999999877 451 1223322110 000
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCE-EEEEecC
Q 026376 134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGG-ILMVSHD 203 (239)
Q Consensus 134 ~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~t-ii~vsHd 203 (239)
+++.+|++|++|||++ ++......+.+.+. +.+.+ +|++||.
T Consensus 79 ---------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ---------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ---------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ---------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2456899999999998 55544565655543 44667 8888884
No 132
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.50 E-value=6.4e-15 Score=129.92 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=75.2
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEec-C-------ceEEEEEeeccCCCCCCCCcHHHH
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRS-A-------KVRIAVFSQHHVDGLDLSSNPLLY 114 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~-~-------~~~~~~~~q~~~~~~~~~~~~~~~ 114 (239)
-++++++.+ +|++++|+||||||||||+|+|+|+.. |+.|+|... + ...+++++|..... .+.+...+
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~--dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVI--DSPGVREF 281 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEE--ECHHHHTC
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEec--CcccHHHh
Confidence 356777654 799999999999999999999999999 999999764 2 23578888764211 11111111
Q ss_pred HHHhCCCCcH----HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376 115 MMRCFPGVPE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163 (239)
Q Consensus 115 ~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~ 163 (239)
....... ..+.++++.+++.. ..++++.+|| ||+||++||++++
T Consensus 282 ---~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 282 ---GLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp ---CCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTSS
T ss_pred ---hhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcCC
Confidence 0112222 23456788888864 5678889999 9999999999864
No 133
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.50 E-value=8.9e-18 Score=151.31 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=86.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------------- 92 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------------- 92 (239)
.++++++++.|+ ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|...+..
T Consensus 143 ~~~l~~Lg~~~~-~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 143 RLDLHSLGMTAH-NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCCGGGSCCCHH-HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCCHHHcCCCHH-HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 345566666662 23467777 53 7899999999999999999999999999999999754321
Q ss_pred EEEEEe---------eccCCCC--CCC--CcHHHHHHH-hC--------CCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 026376 93 RIAVFS---------QHHVDGL--DLS--SNPLLYMMR-CF--------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 150 (239)
Q Consensus 93 ~~~~~~---------q~~~~~~--~~~--~~~~~~~~~-~~--------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 150 (239)
.+++.+ |++...+ .+. .+....+.. .. ...+...+.+.|..+++... ..+.+|||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSg 296 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLG 296 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHH
Confidence 112222 4432100 000 122222211 10 11122334446777888643 25689999
Q ss_pred HHHHHHHHHHHhccCCCEEE
Q 026376 151 GQKSRVAFAKITFKKPHIIL 170 (239)
Q Consensus 151 Gqkqrv~laral~~~p~lll 170 (239)
||+|| |||+|+.+|++..
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 9999999999976
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=3.8e-14 Score=124.00 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=76.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc-CcCCCceeEEecCc---------eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHH
Q 026376 57 RIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAK---------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 126 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~G-l~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (239)
.+.|.||||+|||||+++|++ +..|+.|.+.+++. ..+++++|.....+.. .. ........
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP--SD-------MGNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECC--C-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecH--hh-------cCCcchHH
Confidence 499999999999999999999 88999998876542 2244555443211110 00 00011112
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCH
Q 026376 127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDE 204 (239)
Q Consensus 127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~ 204 (239)
+++.++.+.-.... .... .||| +..+|+++|+|||++ ||..+...+.+.+.+. +.++|++||+.
T Consensus 109 ~~~~i~~~~~~~~~-~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 109 IQELLKEVAQMEQV-DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred HHHHHHHHHHhccc-cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 33444333211111 1111 5666 778999999999999 9999999999988765 34799999997
Q ss_pred HHH-hhhcCeEEE
Q 026376 205 HLI-SGSVEELWV 216 (239)
Q Consensus 205 ~~~-~~~~d~i~~ 216 (239)
+.+ ..+..|+..
T Consensus 175 ~~l~~~l~sR~~~ 187 (354)
T 1sxj_E 175 SPIIAPIKSQCLL 187 (354)
T ss_dssp CSSCHHHHTTSEE
T ss_pred HHHHHHHHhhceE
Confidence 532 234445433
No 135
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.49 E-value=1.2e-16 Score=130.69 Aligned_cols=139 Identities=15% Similarity=0.102 Sum_probs=82.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHH--Hh--CC-CCcHHH
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMM--RC--FP-GVPEQK 126 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~--~~--~~-~~~~~~ 126 (239)
.++|++++|+||||||||||+++|+|+++|+ | ...++++++... +......... .. .. ..+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGFH---LDNRLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGGB---CCHHHHGGGTCGGGTTSGGGBCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCCc---CCHHHHHHhcccccCCCCchhhHHH
Confidence 5789999999999999999999999999875 3 123445554321 1111111100 00 00 012223
Q ss_pred HHHHHHhcCCCc----ccccCCCCCCChHHHHHHHHH-HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEe
Q 026376 127 LRAHLGSFGVTG----NLALQPMYTLSGGQKSRVAFA-KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVS 201 (239)
Q Consensus 127 ~~~~l~~~~l~~----~~~~~~~~~LSgGqkqrv~la-ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vs 201 (239)
+.+.+..+...+ ...+ ....+|+||+||+++| ++++.++.++++|||.. ..+...-..+++++
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd 155 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLE 155 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEEC
T ss_pred HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEe
Confidence 333333321111 1122 2346799999999998 88888888888899841 11223334788888
Q ss_pred cCHHH-HhhhcCe
Q 026376 202 HDEHL-ISGSVEE 213 (239)
Q Consensus 202 Hd~~~-~~~~~d~ 213 (239)
++.+. +.+.+.|
T Consensus 156 ~~~~~~~~R~~~R 168 (208)
T 3c8u_A 156 VPMADLEARLVQR 168 (208)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 88876 5555555
No 136
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.48 E-value=2.4e-17 Score=143.60 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhh
Q 026376 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGS 210 (239)
Q Consensus 147 ~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~ 210 (239)
+||+||+||+..+++++.+|+++ ||| ......++.+. .+.+|+++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA------EKLHERLARIN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT------HHHHHHHHHHC-SSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH------HHHHHHHHHhC-CCCeEEEecccCCCHHHH
Confidence 79999999999999999999987 999 33333333332 256899999965444433
No 137
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.48 E-value=8.9e-17 Score=148.20 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=97.0
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------EEEEEeeccCCC--C-------
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQHHVDG--L------- 105 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~~~~~~q~~~~~--~------- 105 (239)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.+.. .+.+..|..... .
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46789999999999999999999999999999999999999999876532 234444432100 0
Q ss_pred -------------CCCCcHHHHHH-HhCCCC------cHHHHHHHHHhcC-----CCcccc---c---CCCCCCChHHHH
Q 026376 106 -------------DLSSNPLLYMM-RCFPGV------PEQKLRAHLGSFG-----VTGNLA---L---QPMYTLSGGQKS 154 (239)
Q Consensus 106 -------------~~~~~~~~~~~-~~~~~~------~~~~~~~~l~~~~-----l~~~~~---~---~~~~~LSgGqkq 154 (239)
.+.......+. ....+. -...+.++++++. +...+. + .....+|+||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 01111111111 100010 0012223333322 221111 1 123468999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEE--EecCHHHHhhhcCe
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILM--VSHDEHLISGSVEE 213 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~--vsHd~~~~~~~~d~ 213 (239)
|.++|. + | |+|||+.....+++.+.++ +.|+++ +||+++.+...|+.
T Consensus 408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 877641 1 7 9999998765555544433 458875 89999999888864
No 138
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.46 E-value=1.8e-16 Score=126.31 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=62.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCce---------------EEE----EEeeccCCCCCCCCcHHH
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV---------------RIA----VFSQHHVDGLDLSSNPLL 113 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~---------------~~~----~~~q~~~~~~~~~~~~~~ 113 (239)
++++|+|+||||||||+++|+|+++|+ .|.|..++.. .++ +++|+.... +.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~----- 75 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IR----- 75 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EE-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Ee-----
Confidence 589999999999999999999999998 8999866431 122 333332110 00
Q ss_pred HHHHhCCCCcHH--HHHHHHHh-c-CCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376 114 YMMRCFPGVPEQ--KLRAHLGS-F-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169 (239)
Q Consensus 114 ~~~~~~~~~~~~--~~~~~l~~-~-~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll 169 (239)
....+. .+.++++. + +++.. -...|||||+||++||||++.+|++.
T Consensus 76 ------~~~~~~~a~l~~~i~~~l~g~dt~----i~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 76 ------RVSEEEGNDLDWIYERYLSDYDLV----ITEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ------ECCHHHHTCHHHHHHHHTTTCSEE----EEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ------cCChhhhhCHHHHHHhhCCCCCEE----EECCcCCCCCcEEEEEecccCCCccC
Confidence 000111 23444444 3 33221 12349999999999999999998873
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.46 E-value=2.4e-15 Score=129.33 Aligned_cols=121 Identities=17% Similarity=0.048 Sum_probs=78.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHh-----------CC-
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC-----------FP- 120 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-----------~~- 120 (239)
.++.+++|.|++|||||||.+.|++++.+. |. ....+.+++|+.+. ...+....+... .+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f~---~~~~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDFY---LTHEDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGGB---CCHHHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEecccccc---CChHHHHHHhccccccchhhhccCcc
Confidence 467899999999999999999999998764 20 12234455887642 122233332211 01
Q ss_pred CCcHHHHHHHHHhcCCC------c-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 026376 121 GVPEQKLRAHLGSFGVT------G-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181 (239)
Q Consensus 121 ~~~~~~~~~~l~~~~l~------~-~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~ 181 (239)
..+...+.+.++.+.-. . .........+||||+||+++|++...+|+|||+||||+++|+.
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 12345566667665432 1 1112334689999999999984333399999999999999985
No 140
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.46 E-value=5.3e-15 Score=134.93 Aligned_cols=178 Identities=18% Similarity=0.101 Sum_probs=101.4
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------eEEEEEeeccCCCCCC
Q 026376 45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDL 107 (239)
Q Consensus 45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~ 107 (239)
-+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++|... ...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCH
Confidence 36899999999999999999999999999999999999999987431 13567776532 111
Q ss_pred CCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc-cCC-CEEEEeCCCCCCCHHHHH
Q 026376 108 SSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-KKP-HIILLDEPSNHLDLDAVE 184 (239)
Q Consensus 108 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~-~~p-~llllDEPt~~LD~~~~~ 184 (239)
..+....+... ..+.+ .-+++..|..... ..|-.-.+|++.+++++. ..| .+||...|++|.|...
T Consensus 361 ~~tV~e~l~~a~~~~~D----vVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~-- 429 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID----VLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS-- 429 (503)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--
T ss_pred HHHHHHHHHHHHhcCCC----EEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--
Confidence 11111111100 00000 0011222221100 011112347888888774 446 4666666998865542
Q ss_pred HHHHHHh-hcCCEEEEEecCHH---------HHhhhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376 185 ALIQGLV-LFQGGILMVSHDEH---------LISGSVEELWVVSEGKATP--FHGTFHDYKKML 236 (239)
Q Consensus 185 ~l~~~l~-~~~~tii~vsHd~~---------~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~ 236 (239)
..+.+. ..+.|.|++||--. .+..+.-.|..+..|.-+. ..-+++.|.+++
T Consensus 430 -~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~l 492 (503)
T 2yhs_A 430 -QAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEAL 492 (503)
T ss_dssp -HHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHH
T ss_pred -HHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHH
Confidence 233343 35678999999322 2333345677776665310 123555555543
No 141
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.45 E-value=1.1e-14 Score=127.34 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=96.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------------EEEEEeeccCCCCCCCCcHHH
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------------RIAVFSQHHVDGLDLSSNPLL 113 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~~~~~ 113 (239)
..++|++++|+||||||||||+++|+|+++|++|+|.+.+.. .+.+++|... .....+...
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e 202 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYD 202 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHH
Confidence 347899999999999999999999999999999999765321 1335555321 111111111
Q ss_pred HHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh-
Q 026376 114 YMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV- 191 (239)
Q Consensus 114 ~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~- 191 (239)
.+.... ...+. -+++..|... ... .=..+.-.+++++..++.+++||.++. .|.. ...+.+.
T Consensus 203 ~l~~~~~~~~d~----vliDtaG~~~-~~~-------~l~~eL~~i~ral~~de~llvLDa~t~-~~~~---~~~~~~~~ 266 (328)
T 3e70_C 203 AIQHAKARGIDV----VLIDTAGRSE-TNR-------NLMDEMKKIARVTKPNLVIFVGDALAG-NAIV---EQARQFNE 266 (328)
T ss_dssp HHHHHHHHTCSE----EEEEECCSCC-TTT-------CHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH---HHHHHHHH
T ss_pred HHHHHHhccchh----hHHhhccchh-HHH-------HHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH---HHHHHHHH
Confidence 111000 00000 0011122211 011 122333458999999999999996665 3332 2333444
Q ss_pred hcCCEEEEEecCHH---------HHhhhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376 192 LFQGGILMVSHDEH---------LISGSVEELWVVSEGKATP--FHGTFHDYKKML 236 (239)
Q Consensus 192 ~~~~tii~vsHd~~---------~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~ 236 (239)
..+.|+|++||.-. .+....-.|..+..|+-+. ..-+++.+.+++
T Consensus 267 ~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~l 322 (328)
T 3e70_C 267 AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERI 322 (328)
T ss_dssp HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHH
T ss_pred hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHH
Confidence 45779999999542 3334456788888887421 235677776654
No 142
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.40 E-value=8.4e-15 Score=126.64 Aligned_cols=110 Identities=10% Similarity=0.074 Sum_probs=75.2
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe---cCc----------e-EEEEEeeccCCC-C----CCC-C
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK----------V-RIAVFSQHHVDG-L----DLS-S 109 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~---~~~----------~-~~~~~~q~~~~~-~----~~~-~ 109 (239)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.. .++ . .++|++|.+... + .++ .
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e 238 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPR 238 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHH
Confidence 345679999999999999999999999 99999999987 442 1 368999986321 1 111 1
Q ss_pred cHHHHHH-------Hh----CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376 110 NPLLYMM-------RC----FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160 (239)
Q Consensus 110 ~~~~~~~-------~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar 160 (239)
+....+. .. .......++.++++.+++.....++++..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1100110 11 112234578999999999754566788999998888899986
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.4e-15 Score=135.73 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=100.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc------------CcCCCceeEEecCc------------eE---EEEEeeccCC
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAG------------ELQPSSGTVFRSAK------------VR---IAVFSQHHVD 103 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~G------------l~~p~~G~i~~~~~------------~~---~~~~~q~~~~ 103 (239)
++.+|..++|+|+||||||||+|+|+| ...|+.|.+.+.+. .. ..++.+.+-.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 56799999987652 11 2234443311
Q ss_pred CCCCC--CcH-HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCC
Q 026376 104 GLDLS--SNP-LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHL 178 (239)
Q Consensus 104 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~L 178 (239)
....+ ... ..++... ... ..++..+... .+..+..+||+. +| +++++|||++++
T Consensus 96 ~~~~s~~e~L~~~fl~~i-r~~-----d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~ildeel~~~ 154 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHV-RAV-----DAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSIIVDELLIK 154 (392)
T ss_dssp CCCCCSSSSSCHHHHHHH-TTC-----SEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHH-HHH-----HHHHHHHhcc---ccceeeeecccc------------CcchhhhhchhhhHHH
Confidence 11111 000 0111110 000 0112222221 134455567653 89 999999999999
Q ss_pred CHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEE-EEeCC-eEEeeCCCh
Q 026376 179 DLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELW-VVSEG-KATPFHGTF 229 (239)
Q Consensus 179 D~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~-~l~~G-~i~~~~g~~ 229 (239)
|+......++.+... +.||+ +|+...+..+|+++. +|++| +++ +.++.
T Consensus 155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~ 208 (392)
T 1ni3_A 155 DAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPI-RKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCG-GGSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCcee-ecCCC
Confidence 999988777766554 33543 999999999999999 89999 775 44554
No 144
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.39 E-value=6.5e-13 Score=114.42 Aligned_cols=130 Identities=17% Similarity=0.071 Sum_probs=89.4
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 108 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 108 (239)
+.++++++.|++ .. ++++|+ +|++++++|+||+||||+++.|++.+.+..|+|.+.+ .+ ..
T Consensus 77 ~~~~~l~~~~~~-~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~--------~d------~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA--------AD------TQ 137 (295)
T ss_dssp HHHHHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE--------CC------SS
T ss_pred HHHHHHHHHHCC-CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec--------CC------cc
Confidence 456788888843 22 788888 8999999999999999999999999998888876422 11 11
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC-CCCCCHHHHHHHH
Q 026376 109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDAVEALI 187 (239)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP-t~~LD~~~~~~l~ 187 (239)
...... ....+.+..++.. .... ...+-.+.+|.+|+++...+++++|+||| +.++|......+.
T Consensus 138 ~~~~~~-----------ql~~~~~~~~l~~-~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~ 203 (295)
T 1ls1_A 138 RPAARE-----------QLRLLGEKVGVPV-LEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203 (295)
T ss_dssp CHHHHH-----------HHHHHHHHHTCCE-EECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH
T ss_pred cHhHHH-----------HHHHhcccCCeEE-EEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHH
Confidence 111100 1112334455532 1100 12344566789999998899999999999 9999988777766
Q ss_pred HHHh
Q 026376 188 QGLV 191 (239)
Q Consensus 188 ~~l~ 191 (239)
....
T Consensus 204 ~~~~ 207 (295)
T 1ls1_A 204 RLKE 207 (295)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5544
No 145
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.39 E-value=1.2e-12 Score=112.74 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=86.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 132 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (239)
.+|++++|+|+|||||||+++.|++.+.+++|. ++.++.++.. .... .+.+..+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~-----r~~a------------~eqL~~~~~ 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTY-----RIAA------------VEQLKTYAE 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCS-----STTH------------HHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCcc-----cchH------------HHHHHHHHH
Confidence 479999999999999999999999999887782 3456665542 1111 112223334
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH---HHhhc-C-CEEEEE--ecCHH
Q 026376 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ---GLVLF-Q-GGILMV--SHDEH 205 (239)
Q Consensus 133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~---~l~~~-~-~tii~v--sHd~~ 205 (239)
.+++.... ..+ +...+.++++ +.+|+++|+| |+|+|+.....+.+ .+... . .+++++ +|+..
T Consensus 159 ~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~ 227 (296)
T 2px0_A 159 LLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE 227 (296)
T ss_dssp TTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH
T ss_pred hcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH
Confidence 44543211 112 3445666665 3899999999 99999865443332 22211 1 234444 99988
Q ss_pred HHhhhcCeEEEEeCCeEE
Q 026376 206 LISGSVEELWVVSEGKAT 223 (239)
Q Consensus 206 ~~~~~~d~i~~l~~G~i~ 223 (239)
.+.++++++..+..+.++
T Consensus 228 ~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 228 DMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 888888877656666654
No 146
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.37 E-value=9.5e-16 Score=124.58 Aligned_cols=143 Identities=19% Similarity=0.240 Sum_probs=77.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcC-------------CCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHH--
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQ-------------PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-- 117 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-------------p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-- 117 (239)
++|++++|+||||||||||+++|+|+++ |..|++ ++. .|.++.. ..+.....
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g~---~~~~~~~--------~~~~~~i~~~ 68 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGK---DYYFVTR--------EMMQRDIAAG 68 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTT---TBEECCH--------HHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CCc---eEEEccH--------HHHHHHHHcC
Confidence 5799999999999999999999999886 444442 111 1111110 00111000
Q ss_pred ----------hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH---HHHH-HhccCCCEEEEeCCCCCCCHHHH
Q 026376 118 ----------CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV---AFAK-ITFKKPHIILLDEPSNHLDLDAV 183 (239)
Q Consensus 118 ----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv---~lar-al~~~p~llllDEPt~~LD~~~~ 183 (239)
...+.+.+.++++++.-... ..+. .+ .|-++.. ..|+ +++.+|++++|||||+++|.++.
T Consensus 69 ~~l~~~~~~~n~~g~~~~~i~~~~~~~~~~--~~~~---~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e 142 (198)
T 1lvg_A 69 DFIEHAEFSGNLYGTSKEAVRAVQAMNRIC--VLDV---DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETE 142 (198)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEC---CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCH
T ss_pred CCEeeeeecCccCCCCHHHHHHHHHcCCcE--EEEC---CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCH
Confidence 00112345566666532110 0000 00 1111111 1456 78888999999999999998877
Q ss_pred HHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376 184 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE 219 (239)
Q Consensus 184 ~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~ 219 (239)
+.+.+.+.+.... +.++|. . ..+|+++++++
T Consensus 143 ~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 143 ESLAKRLAAARTD-MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECSS
T ss_pred HHHHHHHHHHHHH-HHHhhc--c--CCceEEEECCC
Confidence 7777766543211 234451 1 46888877653
No 147
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.36 E-value=1.1e-12 Score=113.49 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=74.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHH
Q 026376 47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 126 (239)
Q Consensus 47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (239)
.++++..+|++++|+|+|||||||+++.|++.+.+..|+|.+. ..+. .... ..+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv--------~~D~------~r~~-----------a~eq 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA--------AADT------FRAA-----------AIEQ 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--------EECT------TCHH-----------HHHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE--------cccc------ccHH-----------HHHH
Confidence 4566778899999999999999999999999999888877532 2221 0100 0123
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCC
Q 026376 127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRV---AFAKITFKKPHIILLDEPSN 176 (239)
Q Consensus 127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv---~laral~~~p~llllDEPt~ 176 (239)
+..+++.+++.. +..+|+|+.+++ ++++++..+|+++|+|||..
T Consensus 151 L~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 LKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 445566667641 236789999999 99999999999999999975
No 148
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.35 E-value=1.1e-16 Score=140.06 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=98.6
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHhcCc----CCCceeEEecC------
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLD-------SRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSA------ 90 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~G-------e~~~iiG~NGsGKSTLl~~l~Gl~----~p~~G~i~~~~------ 90 (239)
+++.++++..|+ ...+++++++.+.+| +.++|+||||+|||||+++|+|.+ .+++|.+...+
T Consensus 18 ~lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 18 FLRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TTSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred HcCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 355677877774 456889999999877 899999999999999999999988 67777764321
Q ss_pred -----ceEEEEEeeccCCCCCCCCcHHHHH---HHhCC-------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 026376 91 -----KVRIAVFSQHHVDGLDLSSNPLLYM---MRCFP-------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 155 (239)
Q Consensus 91 -----~~~~~~~~q~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 155 (239)
...+.+++|.... .. +....+ +.... ......+...+..+++.. ...++..||+|++||
T Consensus 97 ~~~~~~~~v~~iDE~~~l--~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRL--NK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSR 170 (334)
T ss_dssp HHHCCTTCEEEEETGGGC--CH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTT
T ss_pred HHHccCCCEEEEcchhhc--CH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHh
Confidence 2357888876432 11 122211 11111 111233444555566542 445678999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCe
Q 026376 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 213 (239)
Q Consensus 156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~ 213 (239)
+.++ .+||+.+...+.+.+++... ..-++|+.+.+..+|++
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred cCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence 8654 66776665555555543210 01136888777766654
No 149
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.35 E-value=4e-13 Score=122.65 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCCCChHHHHHHHHH--HHhcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 026376 145 MYTLSGGQKSRVAFA--KITFK---------------KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 207 (239)
Q Consensus 145 ~~~LSgGqkqrv~la--ral~~---------------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~ 207 (239)
.+.+||||+|-..+| .++++ .-.+++|||. +-+|.+.....++.+++++--+|++|=+ .+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~i 453 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--NI 453 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--SC
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--hh
Confidence 467999999974443 33332 2357999999 9999999999999999999888899887 66
Q ss_pred hhhcCeEEEEe
Q 026376 208 SGSVEELWVVS 218 (239)
Q Consensus 208 ~~~~d~i~~l~ 218 (239)
..++|.++.+-
T Consensus 454 ~p~v~~~~~~~ 464 (483)
T 3euj_A 454 SPERGTTYKLV 464 (483)
T ss_dssp CCSSSEEEECC
T ss_pred hhccCceEEEE
Confidence 66788888763
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.29 E-value=5.3e-11 Score=98.35 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=40.6
Q ss_pred cCCCEEEEeCCCCCC--CHHHHH----HHHHHHhhcCCEEEEEecCHHH--------HhhhcCeEEEEeC
Q 026376 164 KKPHIILLDEPSNHL--DLDAVE----ALIQGLVLFQGGILMVSHDEHL--------ISGSVEELWVVSE 219 (239)
Q Consensus 164 ~~p~llllDEPt~~L--D~~~~~----~l~~~l~~~~~tii~vsHd~~~--------~~~~~d~i~~l~~ 219 (239)
.+|+++++|+|++.+ |+.... .+.+.+++.+.|||+++|.... +.++||.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 543322 3344445667899999998765 4578999999864
No 151
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=130.11 Aligned_cols=137 Identities=17% Similarity=0.164 Sum_probs=82.4
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEEEeeccCCCCCCCCc
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAVFSQHHVDGLDLSSN 110 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~~~q~~~~~~~~~~~ 110 (239)
..+++++++++.+| ++|+||||||||||+++|+|...+ |.|.+++.. .+++++|..... .....
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~-~p~i~ 107 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNS-APCVI 107 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT-CSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc-CCCeE
Confidence 35789999999999 999999999999999999999876 566654421 112222211000 00000
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC------------CC
Q 026376 111 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN------------HL 178 (239)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~------------~L 178 (239)
.++.+.... .. +-.. ..+......++.+.+|||||+||+.|++|+..+|++| |||+. --
T Consensus 108 ~~Deid~~~---~~-r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 108 FFDEVDALC---PR-RSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP 178 (274)
T ss_dssp EEETCTTTC---C-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred eeehhhhhh---cc-cCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence 000000000 00 0000 0000112234456789999999999999999999985 99864 33
Q ss_pred CHHHHHHHHHHHhh
Q 026376 179 DLDAVEALIQGLVL 192 (239)
Q Consensus 179 D~~~~~~l~~~l~~ 192 (239)
|...+..+++.+.+
T Consensus 179 ~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 179 PPADRLAILKTITK 192 (274)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 67788888877653
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.23 E-value=1.4e-11 Score=111.89 Aligned_cols=165 Identities=14% Similarity=0.145 Sum_probs=101.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHH-----
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR----- 117 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~----- 117 (239)
..|+++..-+.+|+++.|.|++|+|||||+..|++...+..|. .+.|+.-+. .. ......+..
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E~----s~-~~l~~r~~~~~~~~ 258 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLEM----SA-QQLVMRMLCAEGNI 258 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESSS----CH-HHHHHHHHHHHHTC
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECCC----CH-HHHHHHHHHHHcCC
Confidence 4678888789999999999999999999999999877654441 123332211 00 001111100
Q ss_pred -----hCCCCcH---HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCH-------
Q 026376 118 -----CFPGVPE---QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLDL------- 180 (239)
Q Consensus 118 -----~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~--~~p~llllDEPt~~LD~------- 180 (239)
....... .++.++++.++...... .....+|.+|.+ +.++.++ .+|+++++|+++...+.
T Consensus 259 ~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~ 335 (454)
T 2r6a_A 259 NAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENR 335 (454)
T ss_dssp CHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----C
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCH
Confidence 0011122 23344444443322222 234689999987 4556555 68999999999998743
Q ss_pred -HHHHHHHHHHh----hcCCEEEEEec---------C--HH--------HHhhhcCeEEEEeCCeE
Q 026376 181 -DAVEALIQGLV----LFQGGILMVSH---------D--EH--------LISGSVEELWVVSEGKA 222 (239)
Q Consensus 181 -~~~~~l~~~l~----~~~~tii~vsH---------d--~~--------~~~~~~d~i~~l~~G~i 222 (239)
.....+.+.|+ +.+.+||+++| | +. .+.+.||.|++|..++.
T Consensus 336 ~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 336 QQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 22344444443 45779999999 3 22 46778999999986653
No 153
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.22 E-value=4.6e-13 Score=115.61 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=61.0
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe---cCc-----------eEEEEEeeccCCC-CCC-------
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK-----------VRIAVFSQHHVDG-LDL------- 107 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~---~~~-----------~~~~~~~q~~~~~-~~~------- 107 (239)
|++..|++++|+||||||||||+|+|+|+.+|++|+|.. .++ ..+++++|.+... +.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999987 332 1368899986311 100
Q ss_pred ------CCcHHHHHH--Hh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 026376 108 ------SSNPLLYMM--RC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 150 (239)
Q Consensus 108 ------~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 150 (239)
..+. .++. .. .......++.++|+.++|.....++++..||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 0011 1110 00 11223457889999999964455666777775
No 154
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.20 E-value=2e-13 Score=118.15 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=54.2
Q ss_pred CeEEEEeeEEEcCCCCceeeeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhcCcC--CCcee
Q 026376 27 PIISFSDASFGYPGGPILFKNLNFGI-------------------DLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGT 85 (239)
Q Consensus 27 ~~l~~~~l~~~y~~~~~~l~~isl~i-------------------~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p~~G~ 85 (239)
.+|+++||++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 4689999999992 5889999988 8999999999999999999999999998 99999
Q ss_pred EEe
Q 026376 86 VFR 88 (239)
Q Consensus 86 i~~ 88 (239)
|.+
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 155
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.14 E-value=1.1e-11 Score=102.37 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=75.0
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCcC------------CCceeEEecCceEEEEEeeccCCCCCCCC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GELQ------------PSSGTVFRSAKVRIAVFSQHHVDGLDLSS 109 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~-Gl~~------------p~~G~i~~~~~~~~~~~~q~~~~~~~~~~ 109 (239)
+..+++||++++|++++|+||||||||||+++|+ |+++ |..|++ . ...|.++...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~---g~~~~~~~~~------- 82 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--E---GKDYYFVDRE------- 82 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--B---TTTBEECCHH-------
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--C---CCeEEEecHH-------
Confidence 3568999999999999999999999999999999 9984 444332 0 1123332210
Q ss_pred cHHHHHHHh---------C---CCCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHH-HH-HHHhccCCCEEEEeC
Q 026376 110 NPLLYMMRC---------F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRV-AF-AKITFKKPHIILLDE 173 (239)
Q Consensus 110 ~~~~~~~~~---------~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--Gqkqrv-~l-aral~~~p~llllDE 173 (239)
.+..+... . .......+.++++.-.. ...+- .+.| .-++++ .- ..+++..|+..+++|
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 83 -EFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVI---DWQGAFKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp -HHHHHHHTTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEEC---CHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred -HhhhhhhcCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEc---CHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 11111100 0 00112234444443111 11111 0111 112332 11 123456778888899
Q ss_pred CCCCCCHHHHHHHHHHHh----hc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376 174 PSNHLDLDAVEALIQGLV----LF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~----~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 236 (239)
++.+.|..+...+.+.+. .. ...+++++|+++.+.+-+.+++....++.. ...+.+++.+.+
T Consensus 157 Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~ 226 (231)
T 3lnc_A 157 RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTC-RQVGLRELLESR 226 (231)
T ss_dssp C--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGG-GEESHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccc-cCcchhhHhhcc
Confidence 999998766555543332 11 236888899988877666666655455543 345566665543
No 156
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.11 E-value=1.8e-12 Score=112.20 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=58.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe---cCc--------eE--EEEEeeccCCC-CCC-CCcHHHH
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK--------VR--IAVFSQHHVDG-LDL-SSNPLLY 114 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~---~~~--------~~--~~~~~q~~~~~-~~~-~~~~~~~ 114 (239)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.. .++ .. .+|++|.+... +.+ ..+. ..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 678899999999999999999999999999999999976 321 11 58999986321 111 1222 22
Q ss_pred H-------HHh----------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376 115 M-------MRC----------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 154 (239)
Q Consensus 115 ~-------~~~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 154 (239)
+ ... ........+.++++.+++..... .....|+.|++|
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~-~~y~~lls~~~~ 302 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRY-DHYVEFMTEIKD 302 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHH-HHHHHHHHHHhh
Confidence 2 000 11123457889999999974332 334567777776
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.10 E-value=6.7e-11 Score=94.71 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376 154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 192 (239)
Q Consensus 154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 192 (239)
+.+.+|++++.+|+++++| ||++|..++..+++.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3468899999999999999 999999999998887754
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.06 E-value=9.7e-10 Score=96.66 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=81.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 130 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (239)
-+.+|+++.|.||||||||||+..++.......|.+ .|+.-+. .. ... .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~v--------lyi~~E~----~~--~~~--~--------------- 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIA--------AFIDAEH----AL--DPE--Y--------------- 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--------EEEESSC----CC--CHH--H---------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--------EEEECCC----Cc--CHH--H---------------
Confidence 577999999999999999999888876544333333 3333221 11 111 0
Q ss_pred HHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCC----------CH----HH--HHHHHHH---
Q 026376 131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHL----------DL----DA--VEALIQG--- 189 (239)
Q Consensus 131 l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~--p~llllDEPt~~L----------D~----~~--~~~l~~~--- 189 (239)
.+.+|+..... ......+. .+-+.++++++.+ |+++++|||++.+ |. .. ....+..
T Consensus 106 a~~lG~~~~~l-~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~ 182 (349)
T 2zr9_A 106 AKKLGVDTDSL-LVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 182 (349)
T ss_dssp HHHTTCCGGGC-EEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHe-EEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHH
Confidence 12223221000 00011233 3345677877654 9999999999998 32 11 1122222
Q ss_pred -HhhcCCEEEEEecCHH----------------HHhhhcCeEEEEeCCeEE
Q 026376 190 -LVLFQGGILMVSHDEH----------------LISGSVEELWVVSEGKAT 223 (239)
Q Consensus 190 -l~~~~~tii~vsHd~~----------------~~~~~~d~i~~l~~G~i~ 223 (239)
+++.+.+||+++|-.. .+..+||.++.++.+++.
T Consensus 183 ~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 183 ALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred HHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 3556789999999643 256789998888876543
No 159
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.05 E-value=1.3e-11 Score=103.90 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=36.4
Q ss_pred CeEEEEee-EEEcCCCCceeeeeeEEEeC---CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 27 PIISFSDA-SFGYPGGPILFKNLNFGIDL---DSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 27 ~~l~~~~l-~~~y~~~~~~l~~isl~i~~---Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
++++++|+ ++.|+++..+|+++||+|.+ |++++|+|++||||||+.++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47999999 99994456799999999999 99999999999999999999998553
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.05 E-value=2e-12 Score=118.85 Aligned_cols=165 Identities=14% Similarity=0.078 Sum_probs=94.3
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CcCCCceeEEe---cCceEEEEEeeccC--CCC--CCCCcHHH--HH
Q 026376 47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFR---SAKVRIAVFSQHHV--DGL--DLSSNPLL--YM 115 (239)
Q Consensus 47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G--l~~p~~G~i~~---~~~~~~~~~~q~~~--~~~--~~~~~~~~--~~ 115 (239)
.+++++.++..+.|.|++||||||++++|.. +..++.|++.+ +.+. . -++... ..+ .+..+... ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~--el~~~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-L--ELSVYEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-S--GGGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-h--hhhhhccCCcccceeecCHHHHHHH
Confidence 4778899999999999999999999999876 45555565542 1110 0 011100 000 11111111 11
Q ss_pred HHhCCCCcHHHHHHHHHhcCCCccccc---CCCCCCChHHHHHH----------HHHHHhccCCC-EEEEeCCCCCCCHH
Q 026376 116 MRCFPGVPEQKLRAHLGSFGVTGNLAL---QPMYTLSGGQKSRV----------AFAKITFKKPH-IILLDEPSNHLDLD 181 (239)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~LSgGqkqrv----------~laral~~~p~-llllDEPt~~LD~~ 181 (239)
...... ..++-.+++...|+.+ +.. +....+|+||+|+. ++|+++...|. ++++||+++.++..
T Consensus 236 L~~~~~-EmerR~~ll~~~Gv~~-i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~ 313 (512)
T 2ius_A 236 LRWCVN-EMERRYKLMSALGVRN-LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV 313 (512)
T ss_dssp HHHHHH-HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHcCCcc-HHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh
Confidence 110000 1112235677777653 211 11235788887752 35667788898 89999999988843
Q ss_pred H--HHHHHHHHhh----cCCEEEEEecCHH-------HHhhhcCeEEE
Q 026376 182 A--VEALIQGLVL----FQGGILMVSHDEH-------LISGSVEELWV 216 (239)
Q Consensus 182 ~--~~~l~~~l~~----~~~tii~vsHd~~-------~~~~~~d~i~~ 216 (239)
. ...++..|.+ .|.++|++||++. ...++.+||.+
T Consensus 314 ~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 314 GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 2 2334444433 3558999999987 45566677654
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.03 E-value=4.9e-11 Score=112.07 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=96.0
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc-eeEEecC------ceEEEEEeeccCCC
Q 026376 32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSA------KVRIAVFSQHHVDG 104 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~~------~~~~~~~~q~~~~~ 104 (239)
++++.-| +...+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+.+ ...++++++.....
T Consensus 38 ~~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 38 KLIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp SHHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred cccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 3444445 44568899999999999999999999999999999999999887 6665432 12456655432000
Q ss_pred CCCCCcHHHHHHH-----------------------hCC--C-----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376 105 LDLSSNPLLYMMR-----------------------CFP--G-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 154 (239)
Q Consensus 105 ~~~~~~~~~~~~~-----------------------~~~--~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 154 (239)
+ .......... ... . .......+++..+.. .....+.+|+|++|
T Consensus 117 ~--~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~----~~~~~g~~~~g~~~ 190 (604)
T 3k1j_A 117 I--VEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH----DPFQSGGLGTPAHE 190 (604)
T ss_dssp H--HHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC----CCC----CCCCGGG
T ss_pred H--HHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe----chhhcCCccccccc
Confidence 0 0000000000 000 0 000111222222111 11223679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 192 (239)
Q Consensus 155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 192 (239)
++..++....++.+|++||... |++.....+.+.|.+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999999988 899998888888863
No 162
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.03 E-value=3.2e-12 Score=106.05 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=42.4
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 90 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 90 (239)
.|+++|+...|+ . +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+++
T Consensus 9 ~l~l~~~~~~~~-~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFA-R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEE-E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccC-C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 578888866552 1 566666 89999999999999999999999999999987654
No 163
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.02 E-value=2.7e-10 Score=90.27 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=67.7
Q ss_pred ee--eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE---------ec--------CceEEEEEeeccCCC
Q 026376 44 LF--KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RS--------AKVRIAVFSQHHVDG 104 (239)
Q Consensus 44 ~l--~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~---------~~--------~~~~~~~~~q~~~~~ 104 (239)
.+ +++++++.+| +++|+||||||||||+++|++++.+..|... .. ....+.+++|++...
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~ 92 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG 92 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence 45 7889999998 9999999999999999999998887765421 11 224688888875433
Q ss_pred CCCCCcHH---HHHH----H---h-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 026376 105 LDLSSNPL---LYMM----R---C-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 157 (239)
Q Consensus 105 ~~~~~~~~---~~~~----~---~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 157 (239)
+.+....+ ..+. . . .......++.+++..+++..+. ..-++.||.++++
T Consensus 93 ~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~----~~~~~qg~~~~l~ 152 (182)
T 3kta_A 93 FPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG----YNIVLQGDITKFI 152 (182)
T ss_dssp SSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC----TTEECTTCTTHHH
T ss_pred cccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC----CEEEEcccHHHHH
Confidence 22210000 0000 0 0 0012356788889888886431 1345666665553
No 164
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.97 E-value=2.1e-10 Score=92.42 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=26.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57888999999999999999999999999974
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.97 E-value=1.3e-12 Score=116.10 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=78.4
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe-cC---c--eEEEEEeeccC---CCCCCCCcHHH
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR-SA---K--VRIAVFSQHHV---DGLDLSSNPLL 113 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~-~~---~--~~~~~~~q~~~---~~~~~~~~~~~ 113 (239)
.+++++++.+++|++++|+||||||||||+++|+|.. +|.+.. .. . ..+++++|... +........
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~-- 231 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE-- 231 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTT--
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHH--
Confidence 4789999999999999999999999999999999853 677654 21 0 12344444321 001000000
Q ss_pred HHHHhCCCCc----HHHHHHHHHh---------------cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE-EeC
Q 026376 114 YMMRCFPGVP----EQKLRAHLGS---------------FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL-LDE 173 (239)
Q Consensus 114 ~~~~~~~~~~----~~~~~~~l~~---------------~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll-lDE 173 (239)
.+...... ...+...++. .-+.....+.....+++|+++|++.+.+++..|++++ ||+
T Consensus 232 --~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~ 309 (377)
T 1svm_A 232 --SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER 309 (377)
T ss_dssp --TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred --HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence 00000000 0122333320 0111112334567899999999999888899999988 999
Q ss_pred CCC
Q 026376 174 PSN 176 (239)
Q Consensus 174 Pt~ 176 (239)
|+.
T Consensus 310 ~~~ 312 (377)
T 1svm_A 310 SEF 312 (377)
T ss_dssp CTH
T ss_pred CHH
Confidence 997
No 166
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.93 E-value=1.9e-09 Score=94.90 Aligned_cols=122 Identities=17% Similarity=0.166 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-CceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 132 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (239)
..-.++|+|++|+|||||++.|+|.. +..|..... ....++.+.+... .+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~---------------------------~~~ 217 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYF---------------------------RYQ 217 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTE---------------------------EEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCc---------------------------eEE
Confidence 44589999999999999999999975 221211000 0111222221100 011
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHHHHHHhhc--CCEEEEEe--cCHH
Q 026376 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD-EPSNHLDLDAVEALIQGLVLF--QGGILMVS--HDEH 205 (239)
Q Consensus 133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD-EPt~~LD~~~~~~l~~~l~~~--~~tii~vs--Hd~~ 205 (239)
.++..+ ..+.++..+|+|++|++. +.+...++-++++| +|.+++|......+++.+... +..+|+|. ||+.
T Consensus 218 l~Dt~G-~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 218 IIDTPG-LLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp EEECTT-TSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred EEeCCC-ccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 111111 122456789999998876 66666788899999 999999999877777766542 55777777 8864
No 167
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.93 E-value=6.5e-10 Score=89.89 Aligned_cols=126 Identities=21% Similarity=0.164 Sum_probs=74.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 136 (239)
+++|+|+|||||||+.++|+++ |...++. + .+...........+.++.+.+|.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~---------d-------------~~~~~~~~~~~~~~~~i~~~~g~ 56 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA---------D-------------VVAREVVAKDSPLLSKIVEHFGA 56 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH---------H-------------HHHHHTTCSSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch---------H-------------HHHHHHccCChHHHHHHHHHhCH
Confidence 6899999999999999999983 3222111 0 00000001112344556666664
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHH--hhhcCe
Q 026376 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-QGGILMVSHDEHLI--SGSVEE 213 (239)
Q Consensus 137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~tii~vsHd~~~~--~~~~d~ 213 (239)
.. -.|.|+.+|..+++....+|+.+..+ .+.++|.....+.+.+... +.++|+.+|.+... ...||.
T Consensus 57 ~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~ 126 (206)
T 1jjv_A 57 QI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDR 126 (206)
T ss_dssp TC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSE
T ss_pred HH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCE
Confidence 31 13678999999999888887654333 3345555555555555543 45788888987654 567899
Q ss_pred EEEEeC
Q 026376 214 LWVVSE 219 (239)
Q Consensus 214 i~~l~~ 219 (239)
+++++-
T Consensus 127 vi~l~~ 132 (206)
T 1jjv_A 127 ILVVDV 132 (206)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888853
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.92 E-value=8.7e-10 Score=88.49 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=28.9
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 026376 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV 191 (239)
Q Consensus 156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 191 (239)
...|++++.+|+++++| ||++|..+...+++.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 45689999999999999 99999998887776654
No 169
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.87 E-value=2.2e-09 Score=103.52 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=87.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 130 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (239)
.+..|+.+.|+||+||||||++.++++...+..| .+ ..+.++ + |. ..+.......+..... .. +
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g-~~ilvl-~-P~--r~La~q~~~~l~~~~~-~~------v 168 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN-TQVACT-Q-PR--RVAAMSVAQRVAEEMD-VK------L 168 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT-CEEEEE-E-SC--HHHHHHHHHHHHHHTT-CC------B
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC-ceEEec-C-ch--HHHHHHHHHHHHHHhC-Cc------h
Confidence 3567899999999999999999998776555442 01 111221 1 00 0000000001110000 00 0
Q ss_pred HHhcCC----Cc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CCEEEE-E
Q 026376 131 LGSFGV----TG-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVLF---QGGILM-V 200 (239)
Q Consensus 131 l~~~~l----~~-~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~-~LD~~~~~~l~~~l~~~---~~tii~-v 200 (239)
...+|. .. ...+..+..+|.|+.+|..++++++.+++++++|||.. +||......+++.+... ..+|++ +
T Consensus 169 ~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SA 248 (773)
T 2xau_A 169 GEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSA 248 (773)
T ss_dssp TTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred hheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 000110 00 00123456789999999999999999999999999996 99987766666655443 236666 4
Q ss_pred ecCHHHHhhhcCe
Q 026376 201 SHDEHLISGSVEE 213 (239)
Q Consensus 201 sHd~~~~~~~~d~ 213 (239)
||+.+.+..+++.
T Consensus 249 T~~~~~l~~~~~~ 261 (773)
T 2xau_A 249 TLDAEKFQRYFND 261 (773)
T ss_dssp CSCCHHHHHHTTS
T ss_pred cccHHHHHHHhcC
Confidence 9998887777764
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.83 E-value=9.2e-10 Score=87.91 Aligned_cols=30 Identities=43% Similarity=0.647 Sum_probs=26.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999984433
No 171
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.83 E-value=4.1e-09 Score=96.22 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=72.0
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCC
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 121 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 121 (239)
...++++++.+.+| +.|+||+|+|||||+++|++..... +.++.- .... .
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----------f~~is~--~~~~---------------~ 87 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----------FFHISG--SDFV---------------E 87 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----------EEEEEG--GGTT---------------T
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----------eeeCCH--HHHH---------------H
Confidence 34677788888887 8899999999999999999854210 011100 0000 0
Q ss_pred CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC----------CCCCHHHHH---HHHH
Q 026376 122 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS----------NHLDLDAVE---ALIQ 188 (239)
Q Consensus 122 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt----------~~LD~~~~~---~l~~ 188 (239)
... =++++++|..+++|....|.+|++||+. ++.|..... .++.
T Consensus 88 ---------------------~~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~ 144 (476)
T 2ce7_A 88 ---------------------LFV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV 144 (476)
T ss_dssp ---------------------CCT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHH
T ss_pred ---------------------HHh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH
Confidence 000 0267888999999999999999999994 355654433 3344
Q ss_pred HHhhc----CCEEEEEecCHHHHh
Q 026376 189 GLVLF----QGGILMVSHDEHLIS 208 (239)
Q Consensus 189 ~l~~~----~~tii~vsHd~~~~~ 208 (239)
.+... +..||.+||+++.+.
T Consensus 145 ~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 145 EMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHhccCCCCCEEEEEecCChhhhc
Confidence 34321 336888999986543
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.81 E-value=2.5e-09 Score=86.08 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=30.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
+++.+|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 173
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.78 E-value=3.8e-10 Score=91.16 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=40.2
Q ss_pred EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376 32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86 (239)
Q Consensus 32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i 86 (239)
+|+++.+ +.....+..++..++|++++|+||||||||||+++|++.+. ..|.+
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 4666666 34456688888889999999999999999999999999987 67876
No 174
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.74 E-value=3.3e-08 Score=87.30 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=74.9
Q ss_pred CCCE-EEEECCCCCcHHHHHHHHhcCcC-----------CCceeEEecCceEEEEEeeccCCCCCCCCcHHHHH---HHh
Q 026376 54 LDSR-IAMVGPNGIGKSTILKLIAGELQ-----------PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM---MRC 118 (239)
Q Consensus 54 ~Ge~-~~iiG~NGsGKSTLl~~l~Gl~~-----------p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~---~~~ 118 (239)
.|-. ++|+|++|||||||++.|+|... |+.|.+.+++. .+.+. ..+-............+ ...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~-~v~l~-DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR-KIMLV-DTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE-EEEEE-ECCCBCSSCCGGGHHHHHHHHHG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE-EEEEE-eCCCchhcCCHHHHHHHHHHHHH
Confidence 3444 99999999999999999999876 56677777663 22211 11100000011111111 100
Q ss_pred C------------CCCc---HH---HHHHHHHhcCCCccc---ccCCCCCCChHHHHHHHHH----HHh-ccCCCEEEEe
Q 026376 119 F------------PGVP---EQ---KLRAHLGSFGVTGNL---ALQPMYTLSGGQKSRVAFA----KIT-FKKPHIILLD 172 (239)
Q Consensus 119 ~------------~~~~---~~---~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqrv~la----ral-~~~p~llllD 172 (239)
. .... .+ .+.++++.+++.+.. ...++..+|+++++++.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV---- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence 0 0111 11 234566766653211 1224567898888888877 666 444554
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q 026376 173 EPSNHLDLDAVEALIQGLVL 192 (239)
Q Consensus 173 EPt~~LD~~~~~~l~~~l~~ 192 (239)
+|+|++|..+...+.+.+.+
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 89999999988888777654
No 175
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.70 E-value=1.4e-07 Score=82.65 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=73.5
Q ss_pred CCC--EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHH
Q 026376 54 LDS--RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 131 (239)
Q Consensus 54 ~Ge--~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 131 (239)
.+. .+.|.||+|+|||||++.+++...+..+. .+.++.... . .+. ..-+..++
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~-------~~~~i~~~~--~----~~~------------~~~~~~l~ 95 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA-------RFVYINGFI--Y----RNF------------TAIIGEIA 95 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC-------EEEEEETTT--C----CSH------------HHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCe-------eEEEEeCcc--C----CCH------------HHHHHHHH
Confidence 446 89999999999999999999988765311 122221110 0 011 11122333
Q ss_pred HhcCCCcccccCCCCCCChHHHHHHHHHHH-hccCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCCEEEEEecCH
Q 026376 132 GSFGVTGNLALQPMYTLSGGQKSRVAFAKI-TFKKPHIILLDEPSNHLDLDAVEALIQGLVL------FQGGILMVSHDE 204 (239)
Q Consensus 132 ~~~~l~~~~~~~~~~~LSgGqkqrv~lara-l~~~p~llllDEPt~~LD~~~~~~l~~~l~~------~~~tii~vsHd~ 204 (239)
..++.. .+....+..+......... -..+|.+|++||+... |......+.+.+.+ .+.++|++||+.
T Consensus 96 ~~l~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 96 RSLNIP-----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHTTCC-----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHhCcc-----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 444432 1112344444332221111 1245889999999876 88887777777643 245799999998
Q ss_pred HHHhhhc
Q 026376 205 HLISGSV 211 (239)
Q Consensus 205 ~~~~~~~ 211 (239)
++...+.
T Consensus 170 ~~~~~l~ 176 (389)
T 1fnn_A 170 AVLNNLD 176 (389)
T ss_dssp HHHHTSC
T ss_pred hHHHHhC
Confidence 7655443
No 176
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.68 E-value=5.7e-08 Score=85.38 Aligned_cols=42 Identities=36% Similarity=0.411 Sum_probs=33.2
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CcCCCceeEE
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVF 87 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G--l~~p~~G~i~ 87 (239)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 47899999997 899999999999999999999 6677777664
No 177
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.66 E-value=7.7e-09 Score=82.11 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEE
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVF 87 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~ 87 (239)
+|++++|+||||||||||+++|++..++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999998864 455553
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.65 E-value=8.5e-08 Score=83.82 Aligned_cols=128 Identities=15% Similarity=0.192 Sum_probs=78.1
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 122 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 122 (239)
.-|+.+.--+.+|+++.|.|++|+|||||+..++.......+. +.|+.-+ .......
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~--------Vl~fSlE--------ms~~ql~------- 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG--------VAVFSLE--------MSAEQLA------- 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE--------EEEEESS--------SCHHHHH-------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe--------EEEEeCC--------CCHHHHH-------
Confidence 3466665578999999999999999999998887654332222 3333211 1111110
Q ss_pred cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-c-CCEEEEE
Q 026376 123 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL-F-QGGILMV 200 (239)
Q Consensus 123 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~-~~tii~v 200 (239)
.++......+.+.. +. -+.||.++++|++.|...+.++++++.|+|... +......++.+++ . +..+|||
T Consensus 91 --~Rlls~~~~v~~~~-l~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 91 --LRALSDLTSINMHD-LE---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp --HHHHHHHHCCCHHH-HH---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred --HHHHHHhhCCCHHH-Hh---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEE
Confidence 11112222222211 11 147999999999999999999999999998654 4444444444443 3 3456666
Q ss_pred e
Q 026376 201 S 201 (239)
Q Consensus 201 s 201 (239)
-
T Consensus 163 D 163 (338)
T 4a1f_A 163 D 163 (338)
T ss_dssp E
T ss_pred e
Confidence 4
No 179
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.63 E-value=1.3e-08 Score=82.06 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=29.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376 49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 90 (239)
Q Consensus 49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 90 (239)
.++.++|++++|+||||||||||+++|++.+ |.+.+++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 3567789999999999999999999999987 7666554
No 180
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=1.5e-08 Score=81.62 Aligned_cols=38 Identities=34% Similarity=0.373 Sum_probs=24.8
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
...++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45889999999999999999999999999999999765
No 181
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.60 E-value=7.8e-09 Score=86.62 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=33.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---cCcCCCceeEE
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVF 87 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~---Gl~~p~~G~i~ 87 (239)
.+|++++|+|||||||||++++|+ |+..|++|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999987
No 182
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.58 E-value=1.9e-08 Score=90.63 Aligned_cols=49 Identities=29% Similarity=0.461 Sum_probs=38.0
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
|+++|+ +.|+ +. . .+++.+|++++|+||||||||||+++|+++..+.++
T Consensus 7 l~~~~~-~~~~-~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 7 LELSNF-KSYR-GV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEESC-SSCC-SE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEeCE-EEEC-Cc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 678888 6773 21 2 255778999999999999999999999999888653
No 183
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.53 E-value=2.6e-09 Score=92.80 Aligned_cols=133 Identities=18% Similarity=0.132 Sum_probs=76.5
Q ss_pred eEEEcCCCCceeeeeeEEEeCCC------EEEEECCCCCcHHHHHHHHhcCcC--CCceeEEecCceEEEEEeeccCCCC
Q 026376 34 ASFGYPGGPILFKNLNFGIDLDS------RIAMVGPNGIGKSTILKLIAGELQ--PSSGTVFRSAKVRIAVFSQHHVDGL 105 (239)
Q Consensus 34 l~~~y~~~~~~l~~isl~i~~Ge------~~~iiG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~~~~~~~~q~~~~~~ 105 (239)
+++.| ++...+++++..+..+. ++||+||||||||||+++|++++. |++|.+ +++.++...
T Consensus 66 l~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v--------~~i~~D~f~-- 134 (321)
T 3tqc_A 66 LSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV--------EVITTDGFL-- 134 (321)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE--------EEEEGGGGB--
T ss_pred HHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE--------EEEeecccc--
Confidence 44455 33457788888888877 999999999999999999999987 455553 445554321
Q ss_pred CCCCcHHHHH--HHhC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376 106 DLSSNPLLYM--MRCF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180 (239)
Q Consensus 106 ~~~~~~~~~~--~~~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~ 180 (239)
......... .... + ..+...+.+.++.+.-.......| .+|.+..+|+.-+...+..|+++|++.|..-.|.
T Consensus 135 -~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 135 -YSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp -CCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -cchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 111111110 0000 0 122344445554442211011122 2333334444333445678999999999887765
No 184
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.52 E-value=7.2e-08 Score=84.14 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 132 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (239)
..+..+.|.||+|+|||||++.+++...+..|. ...+.++.-... .+. ......++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~~------~~~------------~~~~~~i~~ 99 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQI------DTP------------YRVLADLLE 99 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHHH------CSH------------HHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCCC------CCH------------HHHHHHHHH
Confidence 457899999999999999999999877554321 011122211000 000 111223333
Q ss_pred hcCCCcccccCCCCCCChHHH-HHHHHHHHhccCCCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCCEEEEEecCHH
Q 026376 133 SFGVTGNLALQPMYTLSGGQK-SRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVL---FQGGILMVSHDEH 205 (239)
Q Consensus 133 ~~~l~~~~~~~~~~~LSgGqk-qrv~laral~~~p~llllDEPt~~LD---~~~~~~l~~~l~~---~~~tii~vsHd~~ 205 (239)
.++... +....+..+. +++.-+..-...|.+|++||+....+ ......+.+.+.. .+.++|++||+..
T Consensus 100 ~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 100 SLDVKV-----PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TTSCCC-----CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HhCCCC-----CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 333321 1123344442 22221111123488999999987663 3344555555532 2347899999886
Q ss_pred HHhhh
Q 026376 206 LISGS 210 (239)
Q Consensus 206 ~~~~~ 210 (239)
....+
T Consensus 175 ~~~~~ 179 (386)
T 2qby_A 175 FVDLL 179 (386)
T ss_dssp GGGGC
T ss_pred hHhhh
Confidence 54443
No 185
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.50 E-value=3.5e-09 Score=88.37 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=46.8
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 89 (239)
..+++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.+.++
T Consensus 25 ~~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 25 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 345677777773 446889999999999 99999999999999999999875 5666554
No 186
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.49 E-value=3.9e-09 Score=89.45 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=45.0
Q ss_pred EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376 30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89 (239)
Q Consensus 30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 89 (239)
+++++.+.|. ...+++++++++.+| ++|+||||||||||+++|++... .|.|.++
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 4566666673 346789999999999 99999999999999999999875 6666654
No 187
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.49 E-value=6.8e-08 Score=78.38 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=27.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999887
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.48 E-value=4.2e-08 Score=80.86 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=31.7
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376 49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89 (239)
Q Consensus 49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 89 (239)
+.+.++|++++|.|+||||||||+++|+|. .|+|.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 345679999999999999999999999998 6767654
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.47 E-value=3.3e-08 Score=79.83 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=33.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
...+|++++|+|+||||||||+++|++.+++..|.|..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 35789999999999999999999999999888887754
No 190
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.46 E-value=2.1e-09 Score=92.52 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=72.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEecCceEEEEEeeccCC--CCCCCC-c--HHHHHHHhCCCCcHHHHH
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVD--GLDLSS-N--PLLYMMRCFPGVPEQKLR 128 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~--~~~~~~-~--~~~~~~~~~~~~~~~~~~ 128 (239)
+.+++|+|++|+|||||++.|.|... +.++..........+++.+.... ..+... . ....+...+.. .+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~----~~~ 83 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNK----AAS 83 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTC----CTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHH----HHH
Confidence 44899999999999999999999742 11111100111234555543210 001111 1 00000000000 001
Q ss_pred HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH-HHHH---HHHHhh-cCC--EEEE
Q 026376 129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLDLDA-VEAL---IQGLVL-FQG--GILM 199 (239)
Q Consensus 129 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~--~~p~llllDEPt~~LD~~~-~~~l---~~~l~~-~~~--tii~ 199 (239)
..++.+++.-...+. ..+|.|++ .+++++. ..|.++++ |.+|... ...+ ++.+.+ .+. .+.+
T Consensus 84 ~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 84 SSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp SCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence 111222211111222 23899886 5566665 67999998 8899764 3433 333433 333 4556
Q ss_pred EecCHHHHhhhcCeEE
Q 026376 200 VSHDEHLISGSVEELW 215 (239)
Q Consensus 200 vsHd~~~~~~~~d~i~ 215 (239)
++|+-+-+..++|.+.
T Consensus 155 SA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 155 SAETGLNVDTIAAIVR 170 (301)
T ss_dssp CTTTTTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6777666666655543
No 191
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.46 E-value=2.4e-06 Score=75.17 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=31.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i 86 (239)
-+.+|+++.|.||+|||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999999887766654
No 192
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.45 E-value=6.6e-08 Score=78.23 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=26.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
|+...+|++++|+||||||||||++.|++..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34556899999999999999999999999875
No 193
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.44 E-value=3.6e-08 Score=85.66 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=39.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6899999999999999999999999999999999988888764
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.44 E-value=6.7e-07 Score=80.57 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=64.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 133 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (239)
++.+++++|+|||||||++..|++.+.+..++|.+ +.-+.. .... .+.+..+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll--------v~~D~~-----r~~a------------~eqL~~~~~~ 150 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL--------VAADVY-----RPAA------------YDQLLQLGNQ 150 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE--------EEECCS-----CHHH------------HHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--------EecCcc-----chhH------------HHHHHHHHHh
Confidence 57899999999999999999999998877666642 222210 0000 1122233344
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 026376 134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS-NH--LDLDAVEALIQGL 190 (239)
Q Consensus 134 ~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt-~~--LD~~~~~~l~~~l 190 (239)
.++.-. . .....+.-.-.+-+++.+...+++++|+|+|- .+ .|.....++...+
T Consensus 151 ~gv~~~-~--~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 151 IGVQVY-G--EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp TTCCEE-C--CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred cCCcee-e--ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 454311 1 11112222223345666666789999999987 44 6776655555433
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.42 E-value=1.4e-06 Score=76.13 Aligned_cols=149 Identities=11% Similarity=0.189 Sum_probs=78.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 128 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (239)
-+++|+++.|.||+|||||||+..++.. .++..|- ....+.|+.-+. .+....+....... +.+.+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg----~~~~vlyi~~E~----~~~~~~l~~~~~~~-g~~~~--- 185 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY----PGGKIIFIDTEN----TFRPDRLRDIADRF-NVDHD--- 185 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB----CCCEEEEEESSS----CCCHHHHHHHHHHT-TCCHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC----CCCeEEEEECCC----CCCHHHHHHHHHHc-CCCHH---
Confidence 4789999999999999999999988874 3221110 011233443221 11111111111111 12221
Q ss_pred HHHHhcCCCcccccCCCCCCChHHH-HHHHHHHHhc----cCCCEEEEeCCCCCCCHH--------H----HHHHHHHH-
Q 026376 129 AHLGSFGVTGNLALQPMYTLSGGQK-SRVAFAKITF----KKPHIILLDEPSNHLDLD--------A----VEALIQGL- 190 (239)
Q Consensus 129 ~~l~~~~l~~~~~~~~~~~LSgGqk-qrv~laral~----~~p~llllDEPt~~LD~~--------~----~~~l~~~l- 190 (239)
++++.+.+. + ..+..+. +.+..++.++ .+++++++|+.++-.... . ...++..|
T Consensus 186 ~~l~~l~~~-----~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~ 257 (343)
T 1v5w_A 186 AVLDNVLYA-----R---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQ 257 (343)
T ss_dssp HHHHTEEEE-----E---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHhceeEe-----e---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 233332110 1 1233322 4444455555 679999999999876432 1 12333333
Q ss_pred ---hhcCCEEEEEecCHHH-------------------HhhhcCeEEEEeC
Q 026376 191 ---VLFQGGILMVSHDEHL-------------------ISGSVEELWVVSE 219 (239)
Q Consensus 191 ---~~~~~tii~vsHd~~~-------------------~~~~~d~i~~l~~ 219 (239)
++.+.+||+++|-... +...+|-++.|+.
T Consensus 258 ~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r 308 (343)
T 1v5w_A 258 KISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRK 308 (343)
T ss_dssp HHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEE
T ss_pred HHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence 3457789999995432 4456788888864
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.39 E-value=3.9e-08 Score=93.36 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=70.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC-CCcHH
Q 026376 49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQ 125 (239)
Q Consensus 49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~ 125 (239)
|++++++..++|+|+||+|||||++.|++...+ ..|+| .++. .. .+. .... ...... .....
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~---------~~--~d~--~~~e-~~~giti~~~~~ 67 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGT---------TT--TDY--TPEA-KLHRTTVRTGVA 67 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTC---------CS--SCC--SHHH-HHTTSCCSCEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCc---------cc--ccC--CHHH-HhcCCeEEecce
Confidence 467788999999999999999999999976654 56665 2211 00 000 0100 000000 00000
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 026376 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH 205 (239)
Q Consensus 126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~ 205 (239)
. +..-+....+.+.+.. -.- .......+-..+.-++++| |+.+++..+.. +++.+...+..+|++.|.++
T Consensus 68 ~----~~~~~~~~nliDTpG~-~~f---~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 68 P----LLFRGHRVFLLDAPGY-GDF---VGEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp E----EEETTEEEEEEECCCS-GGG---HHHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHHHTTCCEEEEEECGG
T ss_pred E----EeeCCEEEEEEeCCCc-cch---HHHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHHHccCCEEEEecCCc
Confidence 0 0000000112232211 000 1122333345788899999 99999988764 45555566778888898877
Q ss_pred H
Q 026376 206 L 206 (239)
Q Consensus 206 ~ 206 (239)
.
T Consensus 138 ~ 138 (665)
T 2dy1_A 138 K 138 (665)
T ss_dssp G
T ss_pred h
Confidence 5
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.38 E-value=1.6e-06 Score=75.05 Aligned_cols=149 Identities=11% Similarity=0.169 Sum_probs=75.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC-cCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 128 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl-~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (239)
-+++|+++.|.||+|||||||+..++.. ..|. .|- ....+.|+.-+. .+....+....... +.+.+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg----~~~~vlyi~~e~----~~~~~~l~~~~~~~-g~~~~--- 170 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG----LSGKAVYIDTEG----TFRWERIENMAKAL-GLDID--- 170 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC----CSCEEEEEESSS----CCCHHHHHHHHHHT-TCCHH---
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC----CCCeEEEEECCC----CCCHHHHHHHHHHh-CCCHH---
Confidence 5789999999999999999999888764 2332 110 011233332221 01111111111111 12222
Q ss_pred HHHHhcCCCcccccCCCCCCChH-HHHHHHHHHHhc---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHH--
Q 026376 129 AHLGSFGVTGNLALQPMYTLSGG-QKSRVAFAKITF---KKPHIILLDEPSNHLDL--------DA----VEALIQGL-- 190 (239)
Q Consensus 129 ~~l~~~~l~~~~~~~~~~~LSgG-qkqrv~laral~---~~p~llllDEPt~~LD~--------~~----~~~l~~~l-- 190 (239)
++++.+-+ .+ ..+.. +.+.+..++.++ .+|+++++|+.++-... .. ...++..|
T Consensus 171 ~~~~~l~~-----~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~ 242 (324)
T 2z43_A 171 NVMNNIYY-----IR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTR 242 (324)
T ss_dssp HHHHTEEE-----EE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHhccEEE-----Ee---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHH
Confidence 12222111 11 12333 235566677776 67999999999986542 11 12333333
Q ss_pred --hhcCCEEEEEecCHHH----------------HhhhcCeEEEEeC
Q 026376 191 --VLFQGGILMVSHDEHL----------------ISGSVEELWVVSE 219 (239)
Q Consensus 191 --~~~~~tii~vsHd~~~----------------~~~~~d~i~~l~~ 219 (239)
++.+.+||+++|-... +...+|.++.|+.
T Consensus 243 la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 243 LAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred HHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 3457789999885432 3445777777753
No 198
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.36 E-value=6.9e-08 Score=89.65 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=35.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce-eEE-ecC
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVF-RSA 90 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G-~i~-~~~ 90 (239)
.+.+|++++|+|+||||||||+++|+|.+.|++| ++. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999887 674 554
No 199
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.35 E-value=6.7e-08 Score=85.59 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=47.6
Q ss_pred eEEEEeeEEEcCCCCceee--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 28 IISFSDASFGYPGGPILFK--------------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~--------------~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
-+.++|+++.|+..+..++ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3678999999987777888 899999999999999999999999999999875
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.35 E-value=4e-09 Score=92.32 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=49.2
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~ 87 (239)
+++.+++.+.| +...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|++.
T Consensus 30 ~ie~~~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 30 LVESRHPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp HHHCCCHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HhhcCCchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 35566666666 344678999999999999999999999999999999999888777664
No 201
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.35 E-value=1.4e-07 Score=73.98 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=27.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 89 (239)
.+|++++|+|+|||||||++++|++.+ |.+.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence 468999999999999999999999875 555544
No 202
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.33 E-value=8.6e-07 Score=76.59 Aligned_cols=131 Identities=11% Similarity=0.155 Sum_probs=73.1
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 122 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 122 (239)
.-|+.+.--+.+|+++.|.|++|+|||||+..++....- .| ..+.|+.-+ .......
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~slE--------~s~~~l~------- 112 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSLE--------MGKKENI------- 112 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEESS--------SCHHHHH-------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEECC--------CCHHHHH-------
Confidence 456777666999999999999999999998877643211 12 123333211 1111100
Q ss_pred cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hcCCE--EEE
Q 026376 123 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILM 199 (239)
Q Consensus 123 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~t--ii~ 199 (239)
.++......+.+.. +.... ..||.++++|+..|...+.++++++.|+|. ++.......++.+. +.+.. +|+
T Consensus 113 --~R~~~~~~~i~~~~-l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVV 186 (315)
T 3bh0_A 113 --KRLIVTAGSINAQK-IKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVM 186 (315)
T ss_dssp --HHHHHHHTTCCHHH-HHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred --HHHHHHHcCCCHHH-HhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 11111111122111 11100 128888888888888888888888888876 44444443334333 33445 777
Q ss_pred Eec
Q 026376 200 VSH 202 (239)
Q Consensus 200 vsH 202 (239)
|-|
T Consensus 187 ID~ 189 (315)
T 3bh0_A 187 IDY 189 (315)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.32 E-value=2.3e-07 Score=72.35 Aligned_cols=28 Identities=43% Similarity=0.559 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998754
No 204
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.31 E-value=3.3e-07 Score=70.66 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=25.7
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376 46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G 77 (239)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4456666665 999999999999999999874
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.28 E-value=2.8e-06 Score=72.04 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=63.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 133 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (239)
++..+.|.||+|+|||||++++++.... .+ ..+. . .. +
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~~--------~~i~--~-~~--l-------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---TF--------LNIS--A-AS--L-------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---EE--------EEEE--S-TT--T--------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---Ce--------EEee--H-HH--H--------------------------
Confidence 5678999999999999999999985421 00 0000 0 00 0
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH----------HHHHHHHHHhhcC-------CE
Q 026376 134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD----------AVEALIQGLVLFQ-------GG 196 (239)
Q Consensus 134 ~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~----------~~~~l~~~l~~~~-------~t 196 (239)
.... .-+++++.|..++.+...+|.+|++||+.+-++.. ....++..+.... ..
T Consensus 91 -------~~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 91 -------TSKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp -------SSSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred -------hhcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 0000 11367788888888888899999999998776532 2234444444321 24
Q ss_pred EEEEecCHH
Q 026376 197 ILMVSHDEH 205 (239)
Q Consensus 197 ii~vsHd~~ 205 (239)
||.+|++.+
T Consensus 162 vi~~tn~~~ 170 (297)
T 3b9p_A 162 VLAATNRPQ 170 (297)
T ss_dssp EEEEESCGG
T ss_pred EEeecCChh
Confidence 677788754
No 206
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.25 E-value=5e-07 Score=72.80 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=28.2
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
-++++|.+++|+|++|||||||.++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3678899999999999999999999999864
No 207
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.21 E-value=1e-05 Score=66.54 Aligned_cols=29 Identities=45% Similarity=0.542 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCcee
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPSSGT 85 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~ 85 (239)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 57999999999999999999987766654
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.20 E-value=1.3e-06 Score=78.96 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=29.8
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHH---hhcCCEEEEEecCH
Q 026376 164 KKPHIILLDEPSNHLDL-DAVEALIQGL---VLFQGGILMVSHDE 204 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~-~~~~~l~~~l---~~~~~tii~vsHd~ 204 (239)
.+|++|++||+..-.+. .....++..+ .+.+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 4555565554 34466899999973
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.18 E-value=2.5e-07 Score=75.36 Aligned_cols=34 Identities=38% Similarity=0.649 Sum_probs=29.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCc---CCCceeEEe
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFR 88 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~---~p~~G~i~~ 88 (239)
+.+++|+||+||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 677787754
No 210
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.15 E-value=8.8e-07 Score=73.11 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=31.0
Q ss_pred eeeeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376 44 LFKNLNFGID---LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87 (239)
Q Consensus 44 ~l~~isl~i~---~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~ 87 (239)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 3566677766 8999999999999999999999999887 55553
No 211
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.09 E-value=1.8e-06 Score=69.83 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.0
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376 46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 76 (239)
Q Consensus 46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~ 76 (239)
.+.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4556677665 99999999999999999885
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.08 E-value=9.7e-07 Score=77.41 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=31.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
.++.+++|+|++|||||||++.|+|.+.+.+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 347899999999999999999999988887777643
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.07 E-value=1.1e-06 Score=69.16 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=27.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
.+|++++|+|++||||||+.++|++.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36899999999999999999999998765 45
No 214
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.05 E-value=8.1e-07 Score=82.37 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=45.3
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376 31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89 (239)
Q Consensus 31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 89 (239)
++++.+.| ....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|...
T Consensus 86 ~~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 34555555 2334678888888 899999999999999999999999998887777543
No 215
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.03 E-value=6.1e-07 Score=80.67 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=43.8
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
.+++++.|++. . ++++|+ +|++++++|+|||||||++..|++.+.+..|+|..
T Consensus 79 ~~~L~~~~~~~-~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 79 YEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHhCCC-c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 34677778432 2 678888 89999999999999999999999999998887754
No 216
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.02 E-value=1.2e-06 Score=70.10 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=31.6
Q ss_pred EEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376 35 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 35 ~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G 77 (239)
++.|++-..+++++|+..++. .++|+|++|+|||||++.+++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 456765556889999998887 689999999999999999987
No 217
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.02 E-value=5.2e-06 Score=73.21 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=33.3
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 76 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~ 76 (239)
+.+..|+..- ...+++..+++.+| +++|+|||||||||+|.+|+
T Consensus 3 M~l~~L~l~n---Fr~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNN---FKSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEE---ETTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEc---cccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4555555431 12357788888875 99999999999999999986
No 218
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.01 E-value=8.5e-07 Score=81.65 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.2
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.+++++|++.+| +.+|+|+||||||||+.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 568899999999 9999999999999999999665
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.96 E-value=8.8e-05 Score=65.11 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=24.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+.+|+++.|.|++|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998777543
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.94 E-value=1.8e-06 Score=69.89 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=31.6
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
+.+.+|.+++|+|++||||||+.+.|++.+.|..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 45678999999999999999999999999887777
No 221
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.93 E-value=8.1e-07 Score=78.26 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=36.8
Q ss_pred eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCcee
Q 026376 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85 (239)
Q Consensus 28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~ 85 (239)
.+.+.|++..|. ++.++++++|+| +|+|++|+|||||++.|.|...+..+.
T Consensus 17 ~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 588999999884 556788999887 999999999999999998876554443
No 222
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.88 E-value=6.7e-06 Score=65.06 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.5
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
++|++..+|..++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 223
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.86 E-value=3.5e-06 Score=66.58 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=30.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i 86 (239)
...+|.+++|+|++||||||+.+.|+..+.+..+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 445789999999999999999999999887766655
No 224
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.85 E-value=6.3e-06 Score=65.94 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 026376 57 RIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~G 77 (239)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 225
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.83 E-value=1.3e-05 Score=63.38 Aligned_cols=33 Identities=18% Similarity=0.437 Sum_probs=20.8
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G 77 (239)
+++++++..++. .++|+|++|+|||||++.+++
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678999988876 789999999999999999997
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.82 E-value=2.6e-06 Score=73.11 Aligned_cols=53 Identities=21% Similarity=0.116 Sum_probs=43.0
Q ss_pred EEeeEEEcCCCCceeee-eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376 31 FSDASFGYPGGPILFKN-LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87 (239)
Q Consensus 31 ~~~l~~~y~~~~~~l~~-isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~ 87 (239)
.+++...|++.. ++ ++|+.+ |.+++++|+||+||||++..|++.+.+..++|.
T Consensus 77 ~~~l~~~~~~~~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 77 YDELSNLFGGDK---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp HHHHHHHTTCSC---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhcccc---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 456667774332 56 888876 999999999999999999999999988777765
No 227
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.82 E-value=9.5e-06 Score=63.25 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999865
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.80 E-value=9.8e-06 Score=65.13 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=26.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999988764
No 229
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.80 E-value=1.3e-05 Score=71.30 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=32.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC-----------cCCCceeEEecC
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGE-----------LQPSSGTVFRSA 90 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~ 90 (239)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567889999999999999999999998 667788876543
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.80 E-value=5.6e-06 Score=75.93 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=43.2
Q ss_pred EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89 (239)
Q Consensus 29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 89 (239)
.+++++...|. ...+++++++++.+| +.|+||||+|||||+++|++... .+.+.++
T Consensus 41 ~~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~ 96 (499)
T 2dhr_A 41 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 96 (499)
T ss_dssp HHHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 34555555553 345788999999999 99999999999999999999864 4555543
No 231
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.78 E-value=1.9e-05 Score=71.06 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=29.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC------------CCceeEEecCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ------------PSSGTVFRSAK 91 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~~~ 91 (239)
.++|+|+||||||||++.|+|... +.+|.+.+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 799999999999999999999854 56677776654
No 232
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=9.1e-07 Score=76.86 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=40.9
Q ss_pred eeEEEcCCCCceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 33 DASFGYPGGPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 33 ~l~~~y~~~~~~l~~isl~i~~Ge~--~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
+++..| +...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 23 ~~~~~~-g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 23 TLDEVY-GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp SGGGCC-SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHhc-CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 333345 344578899999999998 999999999999999999998765443
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.74 E-value=2e-05 Score=60.72 Aligned_cols=24 Identities=42% Similarity=0.697 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999654
No 234
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.74 E-value=1.6e-05 Score=62.39 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPSS 83 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~ 83 (239)
.++|+|++|+|||||++.++|...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 589999999999999999999754433
No 235
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.70 E-value=3.9e-06 Score=73.55 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=33.7
Q ss_pred ceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCcC
Q 026376 43 ILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~--~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367888899999999 99999999999999999998643
No 236
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.69 E-value=0.00024 Score=56.94 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=31.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHL 206 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~ 206 (239)
.+|.+|++||.-. +|......+.+.+.+. +..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999755 7888888888888654 2368888887653
No 237
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.65 E-value=4.5e-05 Score=65.53 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPS 82 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~ 82 (239)
.+..+.|.||+|+|||||++.|+......
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34679999999999999999999876543
No 238
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.65 E-value=0.00018 Score=64.84 Aligned_cols=129 Identities=18% Similarity=0.186 Sum_probs=73.7
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 122 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 122 (239)
.-|+.+.--+.+|+++.|.|++|+|||||...++.......|. .+.|+.-+ .... .+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~-------~vl~~slE--------~~~~-~l~------ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV-------GVGIYSLE--------MPAA-QLT------ 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CEEEEESS--------SCHH-HHH------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-------eEEEEECC--------CCHH-HHH------
Confidence 3456665558999999999999999999998887654322221 12332211 1111 110
Q ss_pred cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hcCCEEEEEe
Q 026376 123 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGGILMVS 201 (239)
Q Consensus 123 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~tii~vs 201 (239)
.++.. ...++..... .-+.||..+.+|+.-|...+.+.++++.|+|. ++.......++.+. +.+..+|+|-
T Consensus 246 --~R~~~--~~~~i~~~~l--~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 --LRMMC--SEARIDMNRV--RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp --HHHHH--HHTTCCTTTC--CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred --HHHHH--HHcCCCHHHH--hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 01111 1233321111 12468899999988887777778888888764 44544444444443 3455566664
No 239
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.62 E-value=2.5e-05 Score=62.42 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 240
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.62 E-value=0.00014 Score=60.94 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=24.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+.++.-+.|.||.|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999998864
No 241
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.58 E-value=0.00013 Score=63.37 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987654
No 242
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.58 E-value=3.7e-05 Score=60.06 Aligned_cols=22 Identities=45% Similarity=0.828 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 243
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.58 E-value=2.9e-05 Score=60.96 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhc
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~G 77 (239)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
No 244
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.58 E-value=3.7e-05 Score=63.18 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
=.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999863
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.56 E-value=2.3e-05 Score=61.90 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGELQPS 82 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~ 82 (239)
.+++|+|++|||||||++.|.+.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999876543
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.51 E-value=2.1e-05 Score=65.07 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999843
No 247
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=3.4e-05 Score=64.04 Aligned_cols=35 Identities=43% Similarity=0.628 Sum_probs=25.2
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++++++.+..| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345556666655 89999999999999999998763
No 248
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.48 E-value=7e-05 Score=67.70 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 026376 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 207 (239)
Q Consensus 151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~ 207 (239)
.+.+....+...+.+++++|+......-......++.+.+++.+..+|++.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 467777778888888888888766554333344667888877777777777655543
No 249
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.46 E-value=0.00058 Score=61.62 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=27.2
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376 44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G 77 (239)
-|+.+.--+.+|+++.|.|+.|+|||||.--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3454443588999999999999999999876654
No 250
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.45 E-value=6.9e-05 Score=57.75 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.43 E-value=4.8e-05 Score=73.63 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=29.2
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
|.+.+|+.+.|+||||||||||+++|++.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46889999999999999999999999998754
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.42 E-value=9.5e-05 Score=57.51 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999987653
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.38 E-value=0.002 Score=56.60 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
-+.+|+++.|.|+.|+|||||...++-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3689999999999999999998766543
No 254
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.35 E-value=7.4e-05 Score=66.06 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=30.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~ 88 (239)
.+..++|+|++|||||||++.|++...+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56789999999999999999999987777777754
No 255
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.35 E-value=0.00012 Score=57.34 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+|-+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998644
No 256
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.34 E-value=3.5e-05 Score=64.12 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=26.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
...++.++.|+|++||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 566788999999999999999999998764
No 257
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.30 E-value=0.00011 Score=59.25 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~G 77 (239)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.29 E-value=0.00014 Score=55.88 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 026376 57 RIAMVGPNGIGKSTILKLI 75 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l 75 (239)
+++|.|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 259
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.28 E-value=0.00012 Score=60.89 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|+||+|||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 260
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=0.00014 Score=57.51 Aligned_cols=23 Identities=48% Similarity=0.644 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.28 E-value=3.1e-05 Score=62.11 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQPS 82 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~ 82 (239)
+++|.|++||||||+++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999877543
No 262
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.27 E-value=0.00011 Score=57.73 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999997643
No 263
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.27 E-value=9.5e-05 Score=57.81 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++.++.|+|++||||||+.+.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999843
No 264
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.27 E-value=0.00013 Score=56.82 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 265
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.26 E-value=0.00013 Score=61.24 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEE
Q 026376 174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWV 216 (239)
Q Consensus 174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~ 216 (239)
|||+.+..+...+.+.+.+. ..+..+.+|..+.+...++++..
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHH
Confidence 89999988887777766432 23456677887777777777644
No 266
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.26 E-value=0.00014 Score=57.99 Aligned_cols=23 Identities=48% Similarity=0.765 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.+.|+||+|||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999987543
No 267
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.26 E-value=0.0044 Score=55.82 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
++.+++++|++||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999987664
No 268
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.22 E-value=0.00028 Score=62.02 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=28.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC-----------cCCCceeEEecC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGE-----------LQPSSGTVFRSA 90 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~ 90 (239)
|-.++|+|.+|+|||||++.|+|- +.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 457899999999999999999983 356667766543
No 269
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.21 E-value=0.00022 Score=56.56 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999866
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.20 E-value=0.00022 Score=55.84 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.+..++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997643
No 271
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.20 E-value=0.0002 Score=55.49 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~G 77 (239)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 272
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.18 E-value=0.00048 Score=56.46 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHhhhcCeEEEEe
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD----------EHLISGSVEELWVVS 218 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd----------~~~~~~~~d~i~~l~ 218 (239)
+++++++||--. |+....+ ++..+.+.+.+||++-|+ ...+..+||+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 7765433 445565667799999993 344555899998864
No 273
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.13 E-value=0.00074 Score=61.52 Aligned_cols=56 Identities=23% Similarity=0.169 Sum_probs=48.0
Q ss_pred EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376 31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 90 (239)
Q Consensus 31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 90 (239)
+.+++... ..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+++
T Consensus 9 l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 9 FRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp EEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred eeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 44554432 2478999999999 99999999999999999999999999999998654
No 274
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.12 E-value=0.00016 Score=61.63 Aligned_cols=30 Identities=37% Similarity=0.635 Sum_probs=26.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 50 FGIDLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+.+.++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456788999999999999999999999865
No 275
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.11 E-value=0.00026 Score=56.34 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
+|-+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876543
No 276
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.11 E-value=0.00025 Score=55.78 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998543
No 277
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.11 E-value=0.0029 Score=54.65 Aligned_cols=120 Identities=12% Similarity=0.179 Sum_probs=64.0
Q ss_pred EeCCCEEEEECCCCCcHHHHH-HHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 026376 52 IDLDSRIAMVGPNGIGKSTIL-KLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl-~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (239)
+.+| ++-|.||.|||||||. .+++...+.. .|. ..|+.-+. .+ .. .
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~--------vlyId~E~--s~----~~-------------~---- 73 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAV--------CLFYDSEF--GI----TP-------------A---- 73 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCE--------EEEEESSC--CC----CH-------------H----
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCce--------EEEEeccc--hh----hH-------------H----
Confidence 5688 9999999999999994 5555443311 222 23332211 01 01 0
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHh--c--cCCCEEEEeCCCCCCC-H--------------HHHHHH----
Q 026376 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--F--KKPHIILLDEPSNHLD-L--------------DAVEAL---- 186 (239)
Q Consensus 130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral--~--~~p~llllDEPt~~LD-~--------------~~~~~l---- 186 (239)
.++++|+..+ +-.+..-.-+|++.+.++.++ + .+|+++++|--++-.- . ...+.+
T Consensus 74 ra~~lGvd~d--~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~L 151 (333)
T 3io5_A 74 YLRSMGVDPE--RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLF 151 (333)
T ss_dssp HHHHTTCCGG--GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHH
T ss_pred HHHHhCCCHH--HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHH
Confidence 1233444311 011111124566667777776 4 3699999998877641 0 011111
Q ss_pred ---HHHHhhcCCEEEEEecCHH
Q 026376 187 ---IQGLVLFQGGILMVSHDEH 205 (239)
Q Consensus 187 ---~~~l~~~~~tii~vsHd~~ 205 (239)
...+++.+.++|++-|-..
T Consensus 152 rkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 152 RIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHhCCEEEEECCeee
Confidence 2234556779999998765
No 278
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.11 E-value=0.00027 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.+|-+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.10 E-value=0.00022 Score=60.58 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
..+.++.|.||+||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998644
No 280
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.10 E-value=0.00024 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.+++|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999975
No 281
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.09 E-value=0.00028 Score=59.49 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 282
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.08 E-value=0.0003 Score=56.24 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|-+++|.|+.||||||+.+.|+-.+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999998543
No 283
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00028 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
=.++|+|+.|||||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999864
No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.08 E-value=0.00016 Score=56.76 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999887653
No 285
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.06 E-value=0.0003 Score=55.14 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
+.+++|.|+.||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998753
No 286
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.06 E-value=0.00022 Score=58.42 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHhh-cC--CEEEEE-ecCHHHHhhhcC
Q 026376 148 LSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVL-FQ--GGILMV-SHDEHLISGSVE 212 (239)
Q Consensus 148 LSgGqkqrv~laral~~~p~llllDEPt~-~LD~~~~~~l~~~l~~-~~--~tii~v-sHd~~~~~~~~d 212 (239)
.+.|...+.. ...+.+.+++++||.-. ++|.......++.+.. .. .+++++ |.+.+.+.++.+
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 3456666653 33688999999999976 5777665444444432 22 244444 666655555443
No 287
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.05 E-value=0.0003 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 288
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.04 E-value=0.00022 Score=60.36 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=27.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i 86 (239)
..+.|.||+|+||||+.++|++...+..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887766644
No 289
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.04 E-value=0.0071 Score=55.07 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=26.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
|+.+---+.+|+++.|.|+.|+|||||.--++--
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 3443324889999999999999999998666543
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.04 E-value=0.00031 Score=54.96 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
+++|.|+.||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987553
No 291
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.03 E-value=0.0048 Score=63.84 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=28.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G 84 (239)
+.+|+.+.|.||+|+|||||+..++.......|
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~ 761 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 761 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 899999999999999999999988876544333
No 292
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.03 E-value=0.00036 Score=54.92 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
No 293
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.02 E-value=0.00029 Score=54.99 Aligned_cols=22 Identities=45% Similarity=0.752 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|++|+|||||++.+++-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999986
No 294
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.01 E-value=0.00041 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.801 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998864
No 295
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00028 Score=55.00 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
++.++.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999997543
No 296
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.00 E-value=0.00032 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++|+|+.|+|||||++.++|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999988543
No 297
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.99 E-value=0.00038 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 298
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.99 E-value=0.00044 Score=52.66 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++|+|+.|+|||||++.+++...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 478999999999999999987543
No 299
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.99 E-value=0.00045 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 300
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.98 E-value=0.00041 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 301
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.98 E-value=0.00084 Score=52.55 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc-C----cCCCce
Q 026376 57 RIAMVGPNGIGKSTILKLIAG-E----LQPSSG 84 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~G-l----~~p~~G 84 (239)
.++|+|+.|+|||||++.+++ . ..|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 589999999999999975554 3 456655
No 302
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.95 E-value=0.00043 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.95 E-value=0.00054 Score=55.32 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998644
No 304
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.94 E-value=0.00047 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 305
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.94 E-value=0.00039 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.93 E-value=0.00063 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44579999999999999999998743
No 307
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.93 E-value=0.00048 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998864
No 308
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.93 E-value=0.00047 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 309
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.92 E-value=0.00048 Score=52.40 Aligned_cols=22 Identities=14% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 310
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.91 E-value=0.00051 Score=55.79 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998543
No 311
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.90 E-value=0.00051 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 312
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.90 E-value=0.00051 Score=52.77 Aligned_cols=23 Identities=17% Similarity=0.624 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988754
No 313
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.90 E-value=0.00045 Score=54.05 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
=.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998853
No 314
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.90 E-value=0.00054 Score=56.70 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++|+|+.|+|||||++.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 315
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.89 E-value=0.00052 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 316
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.89 E-value=0.00054 Score=54.99 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999654
No 317
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00054 Score=54.00 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
++.+-+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567799999999999999999998644
No 318
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.89 E-value=0.00046 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 69999999999999999998864
No 319
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.88 E-value=0.00055 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 320
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.87 E-value=0.00032 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~G 77 (239)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999975
No 321
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.87 E-value=0.00048 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 322
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.86 E-value=0.00054 Score=52.81 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997643
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.86 E-value=0.0006 Score=53.37 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 324
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.86 E-value=0.00051 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999854
No 325
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.86 E-value=0.00058 Score=53.19 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999998654
No 326
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.85 E-value=0.00052 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 327
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.84 E-value=0.00068 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997643
No 328
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.84 E-value=0.00059 Score=54.15 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGELQPS 82 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~ 82 (239)
..+.|.||+|+|||||+++|+......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.84 E-value=0.00078 Score=53.51 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997643
No 330
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.83 E-value=0.00062 Score=51.58 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 331
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.83 E-value=0.00062 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.634 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 332
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.83 E-value=0.00063 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 333
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.83 E-value=0.00072 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.83 E-value=0.00066 Score=54.53 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 335
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.82 E-value=0.00065 Score=51.70 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999763
No 336
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.82 E-value=0.00065 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.81 E-value=0.00058 Score=55.22 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.+-+++|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998644
No 338
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.80 E-value=0.00066 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 339
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.80 E-value=0.00082 Score=54.15 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
No 340
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.80 E-value=0.0007 Score=51.24 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 026376 57 RIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~G 77 (239)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999976
No 341
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.79 E-value=0.0007 Score=57.85 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
No 342
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.79 E-value=0.00063 Score=56.73 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 343
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.79 E-value=0.00056 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999864
No 344
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.78 E-value=0.003 Score=50.39 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCH----------HHHhhhcCeEEEEe
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDE----------HLISGSVEELWVVS 218 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~----------~~~~~~~d~i~~l~ 218 (239)
+.+++++||--- +|++... .++.+...+..||+..+|. ..+..+||.|..|+
T Consensus 81 ~~dvViIDEaqf-l~~~~v~-~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEIVE-IVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHHHH-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHHHH-HHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999543 7766544 4555555577899998854 45556899997764
No 345
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.78 E-value=0.00066 Score=53.01 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
No 346
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.78 E-value=0.00087 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 347
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.77 E-value=0.00072 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++++|+.|+|||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 348
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00071 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 349
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.77 E-value=0.00074 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.77 E-value=0.00073 Score=56.28 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 351
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.76 E-value=0.00075 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998743
No 352
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.76 E-value=0.00081 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
..+++|.|+.||||||+.+.|+-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
No 353
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.00077 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 354
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.74 E-value=0.00068 Score=51.89 Aligned_cols=22 Identities=14% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 355
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.74 E-value=0.011 Score=61.32 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=23.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
+.+|.++.|.||.|+|||||.-.++..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998766554
No 356
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.73 E-value=0.0018 Score=55.77 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=34.4
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc----CcCCCceeEEe
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG----ELQPSSGTVFR 88 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G----l~~p~~G~i~~ 88 (239)
..++...+.+ .|.-++|+|++|+|||||...+.+ ++..+...|..
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 4567777787 688899999999999999998887 44444444443
No 357
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.71 E-value=0.0007 Score=59.64 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
No 358
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.71 E-value=0.00088 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 359
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.71 E-value=0.00092 Score=55.74 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999954
No 360
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.71 E-value=0.00092 Score=54.27 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997543
No 361
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.70 E-value=0.00093 Score=51.86 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998754
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.70 E-value=0.00085 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998865
No 363
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.70 E-value=0.00095 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
-+++|+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 364
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.70 E-value=0.00087 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.880 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 365
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.69 E-value=0.00092 Score=57.19 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+++|+|+.|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999953
No 366
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.69 E-value=0.00091 Score=52.78 Aligned_cols=23 Identities=17% Similarity=0.613 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 367
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.68 E-value=0.00079 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.68 E-value=0.00094 Score=55.21 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
+++|.|+.||||||+.+.|+..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999774
No 369
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.68 E-value=0.00077 Score=56.53 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.|.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998754
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.68 E-value=0.0008 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 371
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.68 E-value=0.00092 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 372
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.67 E-value=0.00094 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 373
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.66 E-value=0.0013 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 374
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.65 E-value=0.00094 Score=55.24 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 375
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.65 E-value=0.00093 Score=56.15 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 376
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.64 E-value=0.0013 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 377
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.64 E-value=0.001 Score=52.25 Aligned_cols=23 Identities=17% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 378
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.0009 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 379
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.63 E-value=0.001 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 380
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.63 E-value=0.0012 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 381
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.00092 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 382
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.62 E-value=0.0035 Score=50.95 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=39.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec----------CHHHHhhhcCeEEEEe
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH----------DEHLISGSVEELWVVS 218 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsH----------d~~~~~~~~d~i~~l~ 218 (239)
+.+++++||--- +|++.. ++++.+...+..||+.-+ -...+..+||.|..|+
T Consensus 101 ~~dvViIDEaQF-~~~~~V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHH-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999876 877766 455666666778999998 3445556899998874
No 383
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.62 E-value=0.00046 Score=56.70 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=18.8
Q ss_pred CCCE-EEEECCCCCcHHHHHHHHhcC
Q 026376 54 LDSR-IAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 54 ~Ge~-~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.|.. +.+.|+-|+||||++-.++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH
Confidence 4564 788999999999996555443
No 384
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.62 E-value=0.00099 Score=54.71 Aligned_cols=28 Identities=32% Similarity=0.429 Sum_probs=22.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987654
No 385
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.61 E-value=0.0011 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
No 386
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.61 E-value=0.0011 Score=51.64 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 387
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.61 E-value=0.0011 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 388
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.60 E-value=0.0012 Score=55.39 Aligned_cols=30 Identities=37% Similarity=0.599 Sum_probs=23.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCcee
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGELQPSSGT 85 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~ 85 (239)
-.++++|.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999976544443
No 389
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.60 E-value=0.00096 Score=52.73 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999998854
No 390
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.60 E-value=0.00082 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998865
No 391
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.00099 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58899999999999999998754
No 392
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.0011 Score=51.54 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 393
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.59 E-value=0.0012 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+++-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999885
No 394
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.59 E-value=0.0012 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 395
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.58 E-value=0.0011 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 396
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.58 E-value=0.00059 Score=58.02 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
No 397
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.58 E-value=0.001 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 026376 57 RIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~G 77 (239)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 398
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.58 E-value=0.0012 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999998544
No 399
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.57 E-value=0.00055 Score=54.88 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
-.++|+|+.|+|||||++.|+|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.57 E-value=0.0011 Score=56.01 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~G 77 (239)
-+++|.|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 401
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.57 E-value=0.0012 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 402
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.001 Score=52.96 Aligned_cols=22 Identities=23% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
No 403
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.56 E-value=0.0012 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
++-+++|+|+.||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999753
No 404
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.55 E-value=0.0016 Score=50.17 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
No 405
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.55 E-value=0.0013 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 406
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.54 E-value=0.0011 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 407
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0013 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 408
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.54 E-value=0.0015 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999987543
No 409
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.54 E-value=0.0013 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.54 E-value=0.0012 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 411
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.53 E-value=0.0012 Score=56.09 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
No 412
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.53 E-value=0.0011 Score=53.04 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
-.++|+|+.|||||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998754
No 413
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.53 E-value=0.00096 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.52 E-value=0.0015 Score=51.35 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 415
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.51 E-value=0.0014 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
No 416
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.51 E-value=0.0012 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 417
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.50 E-value=0.0014 Score=59.47 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=31.4
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
.+++.+ +.+-+|+..+|+|++|+|||||++.|+.....
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 355555 67789999999999999999999999876543
No 418
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.50 E-value=0.0015 Score=53.06 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
.+|-+++|.|+.||||||+.+.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876643
No 419
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.49 E-value=0.0015 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888764
No 420
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.49 E-value=0.0017 Score=49.85 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 421
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.49 E-value=0.0014 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 422
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.48 E-value=0.0013 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 423
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.47 E-value=0.0016 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+|-+++|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999997644
No 424
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.47 E-value=0.0016 Score=53.73 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987654
No 425
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0013 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.46 E-value=0.0016 Score=54.98 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~G 77 (239)
.++.|.|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
No 427
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0018 Score=52.31 Aligned_cols=22 Identities=41% Similarity=0.880 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999874
No 428
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.43 E-value=0.001 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.653 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 429
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.42 E-value=0.0019 Score=52.48 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
+|-++++.|+.||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 430
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.41 E-value=0.0023 Score=50.92 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 431
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.40 E-value=0.0015 Score=54.93 Aligned_cols=24 Identities=38% Similarity=0.536 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++|+|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 799999999999999999999753
No 432
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.40 E-value=0.0015 Score=51.32 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
=.++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999764
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.40 E-value=0.0022 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.+-.++|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
No 434
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.39 E-value=0.0018 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
+++|.||+|||||||.+.|+..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 799999999999999999987653
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.39 E-value=0.0019 Score=57.63 Aligned_cols=29 Identities=24% Similarity=0.123 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.-.+..++.|+|++||||||+.+.|+..+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999997643
No 436
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.39 E-value=0.0016 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 437
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.39 E-value=0.0017 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 438
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.00062 Score=58.51 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHH
Q 026376 165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEH 205 (239)
Q Consensus 165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~ 205 (239)
++.++++|| ...++......+.+.+.+.. ..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 678999999 78899988888888887653 24667776654
No 439
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.37 E-value=0.021 Score=59.99 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=25.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
+.+|+++.|.||.|+|||||...++....
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999877765443
No 440
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.37 E-value=0.004 Score=60.48 Aligned_cols=28 Identities=29% Similarity=0.602 Sum_probs=23.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGELQPSS 83 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~~ 83 (239)
..+.|.||+|+|||+|.+.|+.......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~ 616 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTE 616 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3789999999999999999998775433
No 441
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.35 E-value=0.0018 Score=54.03 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 442
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.35 E-value=0.0017 Score=50.68 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 443
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.34 E-value=0.00065 Score=65.73 Aligned_cols=33 Identities=39% Similarity=0.653 Sum_probs=29.5
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 48 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 48 isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++.+.++..+.|.||+|+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366788999999999999999999999998764
No 444
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.34 E-value=0.0084 Score=49.29 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=42.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHhhhcCeEEEEe
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD----------EHLISGSVEELWVVS 218 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd----------~~~~~~~~d~i~~l~ 218 (239)
.+.+++++||---..| ..++.+.+.+.+..||+..+| ...+..+||.|..|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 677788888888899999999 334556899998874
No 445
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.33 E-value=0.0021 Score=51.49 Aligned_cols=25 Identities=52% Similarity=0.666 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998743
No 446
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.32 E-value=0.0023 Score=52.10 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
.+|-++++.|+.||||||+.+.|+-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999887765
No 447
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.30 E-value=0.00094 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+++-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998643
No 448
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.29 E-value=0.002 Score=49.60 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
..+..+.|.||.|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987653
No 449
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.26 E-value=0.002 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
-+++|+|+.|+|||||++.++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999998888654
No 450
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.25 E-value=0.0025 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
..++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998755
No 451
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.24 E-value=0.0025 Score=52.14 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 452
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.24 E-value=0.0022 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
|-+++|.|+.||||||+.+.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999987653
No 453
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.24 E-value=0.0025 Score=54.92 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+.+++|.||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 454
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.24 E-value=0.0022 Score=50.82 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998643
No 455
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.22 E-value=0.0025 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998764
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.21 E-value=0.0037 Score=50.31 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
..++..-+.+ .|..++|+||+|||||||...|+..
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456555555 5788999999999999999998764
No 457
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0026 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 458
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.20 E-value=0.0026 Score=55.31 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~ 87 (239)
++.+++|+||.|||||||...|+..+. |+|.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiI 69 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP---LEVI 69 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC---EEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC---CcEE
Confidence 456899999999999999999997653 5553
No 459
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.19 E-value=0.0016 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~G 77 (239)
=.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999965
No 460
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.19 E-value=0.0023 Score=50.76 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 026376 57 RIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~G 77 (239)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999988875
No 461
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.18 E-value=0.0026 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.387 Sum_probs=24.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~G 77 (239)
-+.+|+++.|.|++|||||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
No 462
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.17 E-value=0.0011 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=4.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998875
No 463
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.15 E-value=0.00068 Score=56.24 Aligned_cols=33 Identities=39% Similarity=0.670 Sum_probs=25.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+.++++....| +.|.||+|+|||||.++|+...
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33444455555 7899999999999999998753
No 464
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.14 E-value=0.0035 Score=51.41 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
....-+.|.||.|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998754
No 465
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.08 E-value=0.0033 Score=50.59 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
|.+++|-|+-||||||+.+.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999988664
No 466
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.07 E-value=0.0019 Score=53.71 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4677999999999999999999987663
No 467
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0029 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 468
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.05 E-value=0.0027 Score=51.70 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 51 GIDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.+++..++.|+||.||||||..+.|+-.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4456678999999999999999999753
No 469
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.0052 Score=49.82 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIA 76 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~ 76 (239)
+.+|+++.|.|+.|+|||||.--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999975543
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.02 E-value=0.0038 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3478999999999999999998654
No 471
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.01 E-value=0.041 Score=57.87 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=24.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 52 IDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
+.+|+.+.|.||.|+|||||...++-.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999999888653
No 472
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.00 E-value=0.002 Score=57.93 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=26.3
Q ss_pred EEEeCC--CEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 50 FGIDLD--SRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 50 l~i~~G--e~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
|.+.++ .+++|+|++|+||||+...|++.+..
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444434 59999999999999999999998764
No 473
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.00 E-value=0.0056 Score=48.20 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=25.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376 43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 77 (239)
Q Consensus 43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G 77 (239)
..++..-+.+ .|.-+.|.|++|+|||||...+..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455544555 578899999999999999887754
No 474
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.94 E-value=0.0051 Score=46.31 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
..+.-+.|.||.|+|||++.+.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34567899999999999999999876543
No 475
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.94 E-value=0.0047 Score=48.76 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=34.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH----------HHhhhcCeEEEEeC
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH----------LISGSVEELWVVSE 219 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~----------~~~~~~d~i~~l~~ 219 (239)
.+++++++||--. +++.... .+..+.+.+..|+++.++.+ .+..+||.+..|+.
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~~-~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLFE-VVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHHH-HHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCCEEEEECccc-CCHHHHH-HHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 3678999999743 6555433 34444444778888877443 23346899887753
No 476
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.85 E-value=0.0053 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
.++++|.+|+|||||++.|.|....
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred eEEEEecCCCchHHHHHHHhcCcee
Confidence 6899999999999999999997643
No 477
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.84 E-value=0.0044 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|..++|||||++.|+|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
No 478
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.80 E-value=0.0041 Score=55.67 Aligned_cols=23 Identities=52% Similarity=0.742 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.|+|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 479
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.80 E-value=0.0064 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
-.++|+|+.|+|||||++.+.+-.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999987753
No 480
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.0052 Score=48.36 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=28.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHH
Q 026376 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEH 205 (239)
Q Consensus 164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~ 205 (239)
.++.++++||. ..++......+.+.+.... ..+|++|+...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 36889999994 5577777777777776542 34677776653
No 481
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.77 E-value=0.0058 Score=49.24 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997543
No 482
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.73 E-value=0.0033 Score=50.31 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=25.5
Q ss_pred HHHHHHHHhccCCCEEEEeCCCC-----CCCHHHHHHHHHHHh
Q 026376 154 SRVAFAKITFKKPHIILLDEPSN-----HLDLDAVEALIQGLV 191 (239)
Q Consensus 154 qrv~laral~~~p~llllDEPt~-----~LD~~~~~~l~~~l~ 191 (239)
-.-.|++.+..+|.+.+.++|+. .+|+.....+...+.
T Consensus 165 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
T 3gj0_A 165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLE 207 (221)
T ss_dssp HHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHh
Confidence 34467777888888887777765 566666666555544
No 483
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.71 E-value=0.0054 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999987653
No 484
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.66 E-value=0.0011 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 485
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.64 E-value=0.0019 Score=51.04 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
=.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 36899999999999999888753
No 486
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.63 E-value=0.004 Score=54.13 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 026376 57 RIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.++|+|..|+|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 487
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.60 E-value=0.0072 Score=50.91 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999888765
No 488
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.60 E-value=0.0076 Score=52.41 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=26.0
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.+.++++---.++|+|..+||||||++.|++-
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 45556655556999999999999999999875
No 489
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.53 E-value=0.0044 Score=55.84 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=28.1
Q ss_pred eeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCcCC
Q 026376 46 KNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQP 81 (239)
Q Consensus 46 ~~isl~i~~Ge~--~~iiG~NGsGKSTLl~~l~Gl~~p 81 (239)
+.+.-.+..|.. +.|.||.|+|||||.++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344445556665 899999999999999999987654
No 490
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.52 E-value=0.0064 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.+++|.||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 378999999999999999987644
No 491
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.49 E-value=0.0071 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
++..++++|..|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4668999999999999999999986
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.49 E-value=0.0094 Score=50.90 Aligned_cols=26 Identities=38% Similarity=0.555 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
+.-+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987554
No 493
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.44 E-value=0.008 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
+..-+.|.||.|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999875
No 494
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.40 E-value=0.007 Score=54.80 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
.|=.++|+|+.|+|||||++.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999985
No 495
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.38 E-value=0.0072 Score=55.92 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
-+++|+|..|+|||||++.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999964
No 496
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.37 E-value=0.0095 Score=49.91 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 55 DSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 55 Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
+.-+.|.||.|+|||||.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999866
No 497
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.35 E-value=0.0095 Score=52.74 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 026376 57 RIAMVGPNGIGKSTILKLIAGELQ 80 (239)
Q Consensus 57 ~~~iiG~NGsGKSTLl~~l~Gl~~ 80 (239)
.++++|+.|+|||||++.|+|...
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 689999999999999999999543
No 498
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.35 E-value=0.01 Score=50.94 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 53 DLDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455679999999999999999999865
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.29 E-value=0.011 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 026376 56 SRIAMVGPNGIGKSTILKLIAGE 78 (239)
Q Consensus 56 e~~~iiG~NGsGKSTLl~~l~Gl 78 (239)
-..||+|+.||||||+.+.|+-.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998653
No 500
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.29 E-value=0.01 Score=51.57 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376 54 LDSRIAMVGPNGIGKSTILKLIAGEL 79 (239)
Q Consensus 54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~ 79 (239)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999999865
Done!