BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026378
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10107|MRA1_SCHPO Probable ribosomal RNA small subunit methyltransferase mra1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mra1 PE=1 SV=2
Length = 359
Score = 170 bits (431), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 111/160 (69%), Gaps = 10/160 (6%)
Query: 68 VVHEMEGIP---IAPSDQNTKRPGVIFVLEKASLEVAKVGKS----YQILNSDDHSNFLR 120
V M IP I D T+R +I VL++A LE+ KVGK+ YQ+LN DDH L+
Sbjct: 128 VTTHMAPIPARSIGSHDTTTQR--LIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILK 185
Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
+ N+N A RPDI HQ LL++LDS L KAGRLQ VY+ T K VL EV P VR+PRT+KRF
Sbjct: 186 KLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQ-VYIHTAKKVLIEVNPSVRIPRTFKRF 244
Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRK 220
+G+M+QLL KLSI +V EKLL+VIKNPVT YLP N RK
Sbjct: 245 SGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRK 284
>sp|Q9XX15|NEP1_CAEEL Ribosomal RNA small subunit methyltransferase nep-1
OS=Caenorhabditis elegans GN=Y39A1A.14 PE=3 SV=1
Length = 231
Score = 164 bits (415), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 106/147 (72%), Gaps = 3/147 (2%)
Query: 92 VLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGR 151
VLE SLE AKVG Y IL+SD H+NFLR+ K+PADYRPDI+HQ LL++LDS L +AG+
Sbjct: 31 VLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGK 90
Query: 152 LQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVT 211
L+ V+ RT K VL +V P R+PRT+ RF G+M+QLL KLSI A +KL+ V+KNPV+
Sbjct: 91 LR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVS 149
Query: 212 QYLPVNSRKIGCLLARQVSHIVQKNWL 238
+LPV SRK+ L++ V + N L
Sbjct: 150 NHLPVGSRKM--LMSFNVPELTMANKL 174
>sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus
GN=Emg1 PE=1 SV=1
Length = 244
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
Query: 89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
+I VLE ASLE KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct: 43 LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102
Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
AG LQ VY+ T K VL EV P R+PRT+ RF G+M+QLL KLS+ A +KLL+VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161
Query: 209 PVTQYLPVNSRKIG 222
PV+ + PV KIG
Sbjct: 162 PVSDHFPVGCMKIG 175
>sp|Q92979|NEP1_HUMAN Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens
GN=EMG1 PE=1 SV=4
Length = 244
Score = 153 bits (387), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
Query: 89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
+I VLE ASLE KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct: 43 LIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNR 102
Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
AG LQ VY+ T K VL EV P R+PRT+ RF G+M+QLL KLS+ A +KLL+VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161
Query: 209 PVTQYLPVNSRKIG 222
PV+ + PV K+G
Sbjct: 162 PVSDHFPVGCMKVG 175
>sp|Q06287|NEP1_YEAST Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=EMG1 PE=1
SV=1
Length = 252
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 108/158 (68%), Gaps = 14/158 (8%)
Query: 75 IPIAPS-----DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
+P AP D+ TKR +I VL ASLE K+ G Y +LN DDH L++
Sbjct: 24 VPQAPPVLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMG 81
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
++ ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+
Sbjct: 82 RDISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGL 140
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKI 221
M+QLL KLSI +V EKLL+VIKNP+T +LP RK+
Sbjct: 141 MVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKV 178
>sp|Q9P8P7|NEP1_CANAX Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida
albicans GN=NEP1 PE=3 SV=1
Length = 267
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 108/158 (68%), Gaps = 14/158 (8%)
Query: 75 IPIAPS-----DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
+P+ P+ D+ T+R +I VL +A LE K+ G + +LN DDH LR+
Sbjct: 39 VPVQPTALTSRDKTTQR--LIVVLSQACLETYKMNSGGPGGDRFALLNCDDHQGLLRKMG 96
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
++ A+ RPDI HQ LL++LDS + KAGRLQ VY++T +GVL EV P VR+PRT+KRF+G+
Sbjct: 97 RDIAEARPDITHQCLLTLLDSPINKAGRLQ-VYIQTARGVLIEVNPSVRIPRTFKRFSGL 155
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKI 221
M+QLL KLSI + +E LL+VIKNP+T +LP RK+
Sbjct: 156 MVQLLHKLSIRSENSKEVLLKVIKNPITDHLPTKCRKV 193
>sp|Q9W4J5|NEP1_DROME Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila
melanogaster GN=CG3527 PE=3 SV=2
Length = 252
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 91/132 (68%), Gaps = 1/132 (0%)
Query: 89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
+I VLE A LE KV ++++LN DDH+ +R+N ++P RPDI HQ LL + DS L +
Sbjct: 43 LIIVLEGAQLETVKVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNR 102
Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
AG LQ V+VRT+ VL E+ P R+PRT+KRFAG+M+QLL K I A +L+ VIKN
Sbjct: 103 AGLLQ-VFVRTEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKN 161
Query: 209 PVTQYLPVNSRK 220
P+T ++PV +K
Sbjct: 162 PITDHVPVGCKK 173
>sp|Q96UP2|NEP1_CANGA Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=NEP1 PE=3 SV=1
Length = 229
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 97/150 (64%), Gaps = 3/150 (2%)
Query: 74 GIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKS-YQILNSDDHSNFLRRNNKNPADYRPD 132
G P S + P + VL +ASLE +LN DDH LR+ ++ A+ RPD
Sbjct: 10 GGPNNSSVTKKQEPRLYVVLCEASLETYTSNDHRTSLLNCDDHQGILRKMGRDIAEARPD 69
Query: 133 IVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLS 192
I HQ LL++LDS + KAG LQ VY+ T K VL EV P VR+PRT+KRF+G+M+QLL KLS
Sbjct: 70 ITHQCLLTLLDSPINKAGLLQ-VYILTKKNVLIEVNPSVRIPRTFKRFSGLMVQLLHKLS 128
Query: 193 ITAV-GKREKLLRVIKNPVTQYLPVNSRKI 221
I ++ LLRV+KNPVT+YLP + RK+
Sbjct: 129 IRSMESSNTHLLRVVKNPVTKYLPADCRKV 158
>sp|O50087|NEP1_PYRHO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=nep1 PE=3 SV=1
Length = 229
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H LR+ RPDIVH LL+ LDS L K RL+ VYV T + +K
Sbjct: 44 ILDSTYHHAALRQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDYVIYIK 102
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRV 205
P RLPR Y RF G+M L +K AV + +LLR+
Sbjct: 103 PETRLPRNYNRFIGLMENLFEK---GAVPEDLELLRM 136
>sp|Q9V0M0|NEP1_PYRAB Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
abyssi (strain GE5 / Orsay) GN=nep1 PE=3 SV=1
Length = 232
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H L++ RPDIVH LL+ LDS L K RL+ VYV T + +K
Sbjct: 44 ILDSTYHHAALKQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDYVIYIK 102
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRV 205
P RLPR Y RF G+M L +K AV + +LLR+
Sbjct: 103 PETRLPRNYNRFIGLMESLFEK---GAVPEDLELLRL 136
>sp|A3DNG9|NEP1_STAMF Ribosomal RNA small subunit methyltransferase Nep1
OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1) GN=nep1 PE=3 SV=1
Length = 230
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLL 188
RPDIVH +LL+ L+S L K G L+ +Y+ T G + VKP R+PR Y RF G+M QLL
Sbjct: 65 RPDIVHISLLNALESPLNKEGYLR-IYIHTYPGHIIFVKPETRIPRNYNRFVGLMEQLL 122
>sp|Q5JI44|NEP1_PYRKO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=nep1 PE=3 SV=1
Length = 220
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H L++ RPDIVH LL+ L+S K G L+ VYV T + +K
Sbjct: 39 ILDSTYHHAALKKLPDGDRRGRPDIVHICLLNALESIANKEGFLR-VYVHTRNDEVIHIK 97
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPV 210
P RLPR Y RF G+M L +K AV + +LLR+ K P+
Sbjct: 98 PETRLPRNYNRFLGLMESLFKK---GAVPEGLELLRIEKKPL 136
>sp|Q8U1E6|NEP1_PYRFU Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=nep1 PE=3 SV=2
Length = 223
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
IL+S H LR+ RPDIVH LL+ LDS L K RL+ VYV T + V
Sbjct: 42 ILDSTYHHAALRQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDEVIYVD 100
Query: 169 PHVRLPRTYKRFAGIMLQLLQK 190
P RLPR Y RF G+M L +K
Sbjct: 101 PSTRLPRNYNRFIGLMESLFEK 122
>sp|Q57977|NEP1_METJA Ribosomal RNA small subunit methyltransferase Nep1
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=nep1 PE=1
SV=1
Length = 205
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 19/144 (13%)
Query: 92 VLEKASLEVA------KVGKS----YQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSI 141
+L K++LE+ K+ KS Y IL+S+ H + + RPDI+H +LL+I
Sbjct: 6 ILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNI 65
Query: 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREK 201
LDS + +L +Y+ T + ++ P RLPR Y RF G+M ++L+ G+R
Sbjct: 66 LDSPINHEKKLN-IYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLK-------GERNH 117
Query: 202 LLRVIKNPVTQYL-PVNSRKIGCL 224
L+++ + + L +N++KI +
Sbjct: 118 LIKMEEKTLEDLLNEINAKKIAIM 141
>sp|C6A116|NEP1_THESM Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=nep1 PE=3 SV=1
Length = 220
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
+L+S H L+ RPDIVH L++ L+S L K G+L+ VYV T + +K
Sbjct: 39 LLDSTYHHTALKSLKDGERRGRPDIVHLCLINALESILNKEGKLR-VYVHTRNNEVIYIK 97
Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRV 205
P RLPR Y RF G+M L + + K LLR+
Sbjct: 98 PETRLPRNYNRFVGLMESLFKN---RVIPKDLALLRI 131
>sp|B6YTM6|NEP1_THEON Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermococcus
onnurineus (strain NA1) GN=nep1 PE=3 SV=1
Length = 219
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
+L+S H + L++ RPDIVH LL+ L+S K G+L+ VYV T + +K
Sbjct: 39 LLDSTYHHSALKKLEDGERRGRPDIVHVCLLNALESIANKEGKLR-VYVHTRNDEVIYIK 97
Query: 169 PHVRLPRTYKRFAGIMLQLLQ 189
P R+PR Y RF G+M L +
Sbjct: 98 PETRIPRNYNRFVGLMESLFK 118
>sp|Q9YES9|NEP1_AERPE Ribosomal RNA small subunit methyltransferase Nep1 OS=Aeropyrum
pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) GN=nep1 PE=3 SV=1
Length = 224
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 99 EVAKVGKSYQILNSD---DHSNFLRRNNKNPADY---RPDIVHQALLSILDSRLTKAGRL 152
+V K + Y I D D S + PA + RPDI+H ALL+ DS L G L
Sbjct: 22 QVLKSARRYGIEPGDLLLDKSLHYNAMAELPAKWKRGRPDILHVALLTTTDSPLYNEGLL 81
Query: 153 QAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQ 212
+ +Y + G LFEV VR+P+ Y+RF G++ QLL+ + G+ E L+R+ + +
Sbjct: 82 R-IYFQVYDGRLFEVGTGVRVPKNYERFRGLVAQLLKTERVPP-GEGEALIRLHSRSLAE 139
Query: 213 YLPVNSRKI 221
++ R I
Sbjct: 140 FVEREGRFI 148
>sp|A0B5L3|NEP1_METTP Ribosomal RNA small subunit methyltransferase Nep1 OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=nep1 PE=3 SV=1
Length = 226
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 108 QILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEV 167
IL++ H + +R RPDIVH LL L+S L + G+L+ VY+ T + +
Sbjct: 38 SILDASLHHSAMRALPMGDRRGRPDIVHVFLLVALESVLNRVGQLR-VYIHTRNNEMITI 96
Query: 168 KPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLL 203
P R+P+ Y RF G+M L +K S V +RE L+
Sbjct: 97 DPTTRIPKNYPRFVGLMESLFEKGS---VPEREPLI 129
>sp|A3MWJ1|NEP1_PYRCJ Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=nep1 PE=3 SV=1
Length = 221
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVHQ LL+ S L +AGR +A +V T + VKP R+P+ Y F +M QL +
Sbjct: 59 RPDIVHQVLLAFQYSLLNRAGRGRA-FVHTVGDYIISVKPETRVPKNYNNFVSLMEQLFK 117
>sp|Q97WJ0|NEP1_SULSO Ribosomal RNA small subunit methyltransferase Nep1 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=nep1 PE=3 SV=2
Length = 218
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDI+HQALL IL + K +++ T + + +V P++R P+ Y RF G+M QLL+
Sbjct: 61 RPDILHQALLVILTDPVIKGD----IFIHTIQSKIIKVNPNMRPPKNYLRFIGLMEQLLK 116
>sp|O29524|NEP1_ARCFU Ribosomal RNA small subunit methyltransferase Nep1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=nep1 PE=1 SV=1
Length = 219
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDIVHQ LL +LDS L R VYV T G + V RLPR Y RF G+M +L +
Sbjct: 61 RPDIVHQCLLLLLDSPL----RDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFE 116
Query: 190 KLSITA 195
+ ITA
Sbjct: 117 ERRITA 122
>sp|B1YD95|NEP1_PYRNV Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=nep1 PE=3 SV=1
Length = 221
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQL 187
RPDIVHQ LL S L + G L VY+ T + +VKP R+P+ Y F +M QL
Sbjct: 59 RPDIVHQVLLVFQYSLLNRRG-LGRVYIHTRGDYIIQVKPQTRIPKNYNNFVSLMEQL 115
>sp|Q96YP4|NEP1_SULTO Ribosomal RNA small subunit methyltransferase Nep1 OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=nep1 PE=3 SV=1
Length = 219
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLL 188
RPDIVH ALL L ++ G VY+ T G + V +R P+ Y RF G+ QLL
Sbjct: 61 RPDIVHLALLMFLTEKVPIKGE---VYIHTIDGKIIYVNSDMRPPKNYNRFIGLAEQLL 116
>sp|Q8ZW45|NEP1_PYRAE Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=nep1 PE=3 SV=1
Length = 221
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLL 188
RPDIVHQ LL+ S L K G L Y+ T + V P R+P+ Y F ++ QL
Sbjct: 59 RPDIVHQVLLAFQYSLLAKRG-LGKAYIHTRDDYVIAVSPEARVPKNYNNFVALIEQLF 116
>sp|Q9HJ48|NEP1_THEAC Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=nep1 PE=3 SV=2
Length = 222
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDI++ L +S L +L+ YV T + + P R+P++Y RF G+ L +
Sbjct: 62 RPDIIYLLLEMTQESILNHKNQLRT-YVHTRNNQVIRISPITRMPKSYNRFIGLFEDLFE 120
Query: 190 KLSITAVGK 198
K IT GK
Sbjct: 121 KRIITNNGK 129
>sp|A1RVH0|NEP1_PYRIL Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=nep1 PE=3
SV=1
Length = 221
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQL 187
RPDIVHQ LL S L K G L +Y+ T V+ R+P+ Y F +M QL
Sbjct: 59 RPDIVHQVLLVFQYSLLNKRG-LGRIYIHTQGDYTIYVRWETRIPKNYNNFVSLMEQL 115
>sp|A4WMI3|NEP1_PYRAR Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=nep1 PE=3
SV=1
Length = 221
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLL 188
RPDIVHQALL S L G L +Y+ T + V P R+P+ Y F ++ QL
Sbjct: 59 RPDIVHQALLVFQYSLLAARG-LGRMYIHTLGDYVISVDPSTRVPKNYNNFVSLVEQLF 116
>sp|Q979E4|NEP1_THEVO Ribosomal RNA small subunit methyltransferase Nep1 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=nep1 PE=3 SV=1
Length = 222
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
RPDI++ L +S L + L+ Y+ T + ++ P R+P++Y RF G+ L +
Sbjct: 62 RPDIIYILLEMAQESILNRKNLLRT-YIHTRNDFVIKISPITRMPKSYNRFIGLFEDLFE 120
Query: 190 KLSITAVGK 198
K IT GK
Sbjct: 121 KEIITNNGK 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,730,942
Number of Sequences: 539616
Number of extensions: 4012625
Number of successful extensions: 86446
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 885
Number of HSP's that attempted gapping in prelim test: 47035
Number of HSP's gapped (non-prelim): 23050
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)