Query 026378
Match_columns 239
No_of_seqs 137 out of 226
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oii_A Essential for mitotic g 100.0 1.1E-61 3.6E-66 433.0 13.0 152 82-234 35-192 (253)
2 3bbd_A Ribosome biogenesis pro 100.0 2.9E-58 9.7E-63 400.2 8.5 138 89-234 3-152 (205)
3 3o7b_A Ribosome biogenesis NEP 100.0 1.4E-55 4.7E-60 392.0 8.2 146 82-234 21-183 (244)
4 2qmm_A UPF0217 protein AF_1056 99.7 2.2E-17 7.5E-22 142.6 2.5 97 128-233 27-140 (197)
5 3aia_A UPF0217 protein MJ1640; 99.6 8.6E-16 2.9E-20 134.1 5.3 101 127-234 31-153 (211)
6 2kw3_C Regulatory factor X-ass 45.1 14 0.00048 26.8 2.6 20 126-145 9-32 (62)
7 2vlg_A Sporulation kinase A; h 30.3 28 0.00096 25.2 2.3 17 155-171 12-28 (111)
8 3f1p_B ARYL hydrocarbon recept 28.3 34 0.0012 23.2 2.3 18 154-171 14-31 (121)
9 1v5q_A GRIP1 homolog, glutamat 28.2 1.3E+02 0.0045 22.1 5.8 62 142-217 54-115 (122)
10 3f1p_A Endothelial PAS domain- 27.6 28 0.00096 23.4 1.8 39 155-193 12-69 (117)
11 2ejy_A 55 kDa erythrocyte memb 27.1 72 0.0024 23.3 4.1 37 143-185 46-82 (97)
12 3e17_A Tight junction protein 26.2 66 0.0023 22.4 3.6 37 143-185 31-67 (88)
13 3o46_A Maguk P55 subfamily mem 26.0 68 0.0023 22.3 3.6 37 142-184 37-73 (93)
14 1uep_A Membrane associated gua 24.3 89 0.003 22.2 4.1 39 142-186 43-81 (103)
15 1wi4_A Synip, syntaxin binding 22.0 1.1E+02 0.0038 22.2 4.3 37 142-184 50-86 (109)
16 2q9v_A Membrane-associated gua 21.1 98 0.0034 21.1 3.6 39 142-186 36-74 (90)
17 1ueq_A Membrane associated gua 20.7 1.4E+02 0.0047 22.0 4.6 63 142-218 53-115 (123)
No 1
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=100.00 E-value=1.1e-61 Score=433.04 Aligned_cols=152 Identities=48% Similarity=0.817 Sum_probs=143.1
Q ss_pred CCCCCCcEEEEecCCchheeec------CCeeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEE
Q 026378 82 QNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAV 155 (239)
Q Consensus 82 ~~~~~~~livVLe~A~Le~~k~------gk~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDSPLNKaG~Lq~V 155 (239)
.+++++|+||||++|+||+++. +++|+|||+++|+++|+++++++++|||||||||||+|||||||++|+|+ |
T Consensus 35 ~~~~~~rlivVL~~a~LE~v~~~~~~r~~~~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~lldSpLNk~G~L~-V 113 (253)
T 3oii_A 35 KDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQ-V 113 (253)
T ss_dssp TCCSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCEE-E
T ss_pred cccCCceEEEEeCCCccceeeccccccCCCCeEeechHHHHHHHHHcCCchhhcCCCHHHHHHHHHhcChhhhcCceE-E
Confidence 3357999999999999999995 57899999999999999999999999999999999999999999999999 9
Q ss_pred EEEecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCCCeEEEEeeccceeeccc
Q 026378 156 YVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQ 234 (239)
Q Consensus 156 YIhT~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~~~kIglS~~g~~v~~~~ 234 (239)
||||.+|+||+|||++||||||+||+|||+|||++++|++.+++++||+|++|||++|||+||++|+||++|+.|++.+
T Consensus 114 YIhT~~~~lIeV~P~~RiPRty~rF~GLM~qLL~k~~I~~~~~~~~LLkvikn~l~d~Lp~~~~kI~ls~~g~~v~~~~ 192 (253)
T 3oii_A 114 YIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQD 192 (253)
T ss_dssp EEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEETTEEEEEEEEECSCGGGTSCSSEEEEEECTTSCBCCHHH
T ss_pred EEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEcCCHHHhCCCCCeEEEEccCCCccCHHH
Confidence 9999999999999999999999999999999999999999878899999999999999999999999999999887643
No 2
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*
Probab=100.00 E-value=2.9e-58 Score=400.20 Aligned_cols=138 Identities=27% Similarity=0.480 Sum_probs=134.0
Q ss_pred EEEEecCCchhee--------ecCC--eeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEE
Q 026378 89 VIFVLEKASLEVA--------KVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVR 158 (239)
Q Consensus 89 livVLe~A~Le~~--------k~gk--~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDSPLNKaG~Lq~VYIh 158 (239)
++|||++|+||++ |+|| +|+|||+++|+++|+++++++++|||||||||||+||||||||+|+|+ ||||
T Consensus 3 l~vvL~~a~LE~vP~ei~~a~k~gk~p~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~llDSpLNk~G~L~-VYIh 81 (205)
T 3bbd_A 3 YNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLN-IYIH 81 (205)
T ss_dssp EEEEEEEESCCBCCGGGGGGCCCBTTBCCSBCCHHHHTTTTTTCTTGGGSSCHHHHHHHHHHHHTSHHHHTTCEE-EEEE
T ss_pred EEEEECCCccccChhhhhhhHhcCCCCcceecchHHHHHHHHhcccchhccCCcHHHHHHHHHhcChHHHCCCeE-EEEE
Confidence 7899999999999 9999 999999999999999999999999999999999999999999999999 9999
Q ss_pred ecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCC--CeEEEEeeccceeeccc
Q 026378 159 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVN--SRKIGCLLARQVSHIVQ 234 (239)
Q Consensus 159 T~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~--~~kIglS~~g~~v~~~~ 234 (239)
|.+|+||+|||++||||||+||+|||+|||++++ ++||+|++|||++|||+| +++||||++|+.+++.+
T Consensus 82 T~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~-------~~Llkvik~~l~~~lp~~~~~~~i~ls~~g~~v~~~~ 152 (205)
T 3bbd_A 82 TYDDKVLKINPETRLPRNYFRFLGVMEKVLKGER-------NHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHPKL 152 (205)
T ss_dssp ETTSEEEEECTTCCCCSSHHHHHHHHHHHHTTCC-------CSSEEEEECCHHHHHHHTTCCEEEEEEEEEEECCGGG
T ss_pred ecCCEEEEECCCCCCCCCHHHHHHHHHHHHHhCc-------hhheEEEcCCHHHhcCCCCCceEEEEcCCCcccCHHH
Confidence 9999999999999999999999999999999997 699999999999999999 99999999999887654
No 3
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.4e-55 Score=392.03 Aligned_cols=146 Identities=30% Similarity=0.395 Sum_probs=134.5
Q ss_pred CCCCCCcEEEEecCCchheee---------------cCC--eeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcc
Q 026378 82 QNTKRPGVIFVLEKASLEVAK---------------VGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDS 144 (239)
Q Consensus 82 ~~~~~~~livVLe~A~Le~~k---------------~gk--~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDS 144 (239)
..-+++|++|||.+|+||++. +|| +|+|||+++|+++|++++++++||||||||||||+||||
T Consensus 21 ~~~~~~~l~vVL~ea~LElvp~ei~~hp~v~~~a~rrgk~p~~~LLd~~~H~~amkkl~~~~krgRPDIvHq~LL~llDS 100 (244)
T 3o7b_A 21 LYFQGMGSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDS 100 (244)
T ss_dssp -----CCEEEEEEEESCCBCCGGGTTSHHHHHHHHHHTSCGGGSBCCHHHHGGGCTTCTTGGGCSCHHHHHHHHHHHHTC
T ss_pred ceecCcEEEEEECCCcccccchhhccCcchhhhhhhcCCCccccccchHHHHHHHHHCCChhhccCccHHHHHHHHHhhC
Confidence 335789999999999999995 456 499999999999999999999999999999999999999
Q ss_pred hhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCCCeEEEEe
Q 026378 145 RLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCL 224 (239)
Q Consensus 145 PLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~~~kIglS 224 (239)
|||| |+ |||||.+|+||+|||.+||||||+||+|||+|||++++|++ ++++||+|++|||++|||++ ++|+||
T Consensus 101 pLNk---L~-VYIHT~~~~lI~V~P~~RiPRty~RF~GLM~qLL~k~~I~~--~~~~LLkvik~~l~~~lp~~-~~I~lS 173 (244)
T 3o7b_A 101 PLRD---FE-VYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITA--GDTTLIEFKDVGLRDIVRGR-DVLLFR 173 (244)
T ss_dssp SCCS---EE-EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEE--TTEEEEEEESSCHHHHTTTS-EEEEEE
T ss_pred hhhh---eE-EEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhhCcCCC--CCCeeEEEEcCCHHHhcCCC-cEEEEc
Confidence 9998 99 99999999999999999999999999999999999999999 46899999999999999999 999999
Q ss_pred eccceeeccc
Q 026378 225 LARQVSHIVQ 234 (239)
Q Consensus 225 ~~g~~v~~~~ 234 (239)
++|+.|++.+
T Consensus 174 ~~G~~v~~~~ 183 (244)
T 3o7b_A 174 EKGGRFEFSE 183 (244)
T ss_dssp EEEECCCHHH
T ss_pred cCCCcCCHHH
Confidence 9999887643
No 4
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=99.65 E-value=2.2e-17 Score=142.64 Aligned_cols=97 Identities=12% Similarity=-0.025 Sum_probs=87.9
Q ss_pred CCCCcHHHHHHHHhhcchhhhcCCccEEEEEecC------------CeEEEEcCCCCCCcchhHHHHHHHHHHHh--Ccc
Q 026378 128 DYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDK------------GVLFEVKPHVRLPRTYKRFAGIMLQLLQK--LSI 193 (239)
Q Consensus 128 ~~RPDIvHq~LL~LLDSPLNKaG~Lq~VYIhT~~------------g~lIeVsP~~RIPRty~RF~GLM~qLL~k--~~I 193 (239)
+|||||+|+||+++|.|++|..|.+. |||||.+ +.|++|+|+.| +|.|||+|+|.+ +++
T Consensus 27 ~GR~DIl~r~l~~al~~s~~~R~dv~-vyl~l~~~p~p~~ti~f~g~~v~~v~PdeR------~~~gli~kaL~~~~~~~ 99 (197)
T 2qmm_A 27 AGRMDVLCRCTSQALFISHGIRRDVE-VYLLLLGPPSPPKSILIKGDEVRRMSPDER------NVAGHIKKALAVECGKS 99 (197)
T ss_dssp TTSHHHHHHHHHHHHEETTEECTTEE-EEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHHHSCCCSS
T ss_pred CCCceeHHHHHHHHHhhhhcccCCeE-EEEEECCCCCCCeeEEecCCeEEEcChhHH------HHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999 9999999 99999999999 999999999999 888
Q ss_pred ccCCCccceEEEEecccccccCC---CCeEEEEeeccceeecc
Q 026378 194 TAVGKREKLLRVIKNPVTQYLPV---NSRKIGCLLARQVSHIV 233 (239)
Q Consensus 194 ~~~~~~e~LLkviknplt~~LP~---~~~kIglS~~g~~v~~~ 233 (239)
++. ++++++|.+.++++++-. ....|-|+.+|+.+...
T Consensus 100 ~~~--~~pgi~v~~~sle~ll~e~~~~~~v~~L~E~G~~i~~~ 140 (197)
T 2qmm_A 100 WKK--VHSGVYVSRKGLEELIEELSEKYSIIYLKEDGVDISNA 140 (197)
T ss_dssp CEE--EETTEEEECCCHHHHHHHHHHHSEEEEEEEEEEEGGGS
T ss_pred cCC--CCCCEEEECCCHHHHHHHhhcCCcEEEEcCCCCCCchh
Confidence 764 479999999999999943 14589999999876543
No 5
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=99.58 E-value=8.6e-16 Score=134.06 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=88.4
Q ss_pred CCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCC----eEEE--------EcCCCCCCcchhHHHHHHHHHHHhCc--
Q 026378 127 ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKG----VLFE--------VKPHVRLPRTYKRFAGIMLQLLQKLS-- 192 (239)
Q Consensus 127 ~~~RPDIvHq~LL~LLDSPLNKaG~Lq~VYIhT~~g----~lIe--------VsP~~RIPRty~RF~GLM~qLL~k~~-- 192 (239)
.+|||||+|+||+++|.|+++..|.+. |||||.++ ++|+ |+|+.| +|.|||+|+|.+++
T Consensus 31 ~~GR~DIl~r~l~~Al~~s~~~R~dv~-vyl~l~~~p~p~~~I~f~g~~lr~v~PdeR------s~~~li~kaL~~~~~~ 103 (211)
T 3aia_A 31 SCGRLDLLCRCVSDAFFLSHDIRRDVV-FYAVLYGQPNPPVCIKFVGSELKKVSPDER------NIAIFIKKALKKFEEL 103 (211)
T ss_dssp TTTSHHHHHHHHHHHHBCSSSBCTTEE-EEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHHHHHHHS
T ss_pred CCCCeehHHHHHHHHHhhhhcccCCeE-EEEEECCCCCCceEEEEcCccccccChhHH------HHHHHHHHHHHhcccc
Confidence 589999999999999999999999999 99999999 9999 999999 99999999999976
Q ss_pred ---cccCC-CccceEEEEecccccccCC----CCeEEEEeeccceeeccc
Q 026378 193 ---ITAVG-KREKLLRVIKNPVTQYLPV----NSRKIGCLLARQVSHIVQ 234 (239)
Q Consensus 193 ---I~~~~-~~e~LLkviknplt~~LP~----~~~kIglS~~g~~v~~~~ 234 (239)
+++.. .+++++.|.+.++++++-. +...|-|+.+|+.+...+
T Consensus 104 ~~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~~~~v~~L~E~G~~i~~~~ 153 (211)
T 3aia_A 104 DEEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLHMNGEDVENVD 153 (211)
T ss_dssp CTTGGGSCEEEETTEEEECCCHHHHHHHHHHTTCEEEEEEEEEEEGGGCC
T ss_pred cccCCcccccCCCCeEEEcCCHHHHHHHHhhcCCcEEEEcCCCCCCcccc
Confidence 76511 2469999999999999842 446899999998766543
No 6
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=45.09 E-value=14 Score=26.76 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHH----HHhhcch
Q 026378 126 PADYRPDIVHQAL----LSILDSR 145 (239)
Q Consensus 126 ~~~~RPDIvHq~L----L~LLDSP 145 (239)
.+..||||+|+.| ++||-||
T Consensus 9 d~~~rp~l~eqVLNqKk~SLLRsP 32 (62)
T 2kw3_C 9 DRPARPTLLEQVLNQKRLSLLRSP 32 (62)
T ss_dssp CCSCCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCccHHHHHHHHHHHHHhcCH
Confidence 4578999999988 6788887
No 7
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=30.31 E-value=28 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=15.5
Q ss_pred EEEEecCCeEEEEcCCC
Q 026378 155 VYVRTDKGVLFEVKPHV 171 (239)
Q Consensus 155 VYIhT~~g~lIeVsP~~ 171 (239)
||+.+.+|.+++|||.+
T Consensus 12 i~v~d~~G~i~yvn~~~ 28 (111)
T 2vlg_A 12 HAVLASNGRIIYISANS 28 (111)
T ss_dssp EEEECTTSBEEEECTTH
T ss_pred EEEEcCCCeEEEEChHH
Confidence 89999999999999974
No 8
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=28.25 E-value=34 Score=23.18 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=15.8
Q ss_pred EEEEEecCCeEEEEcCCC
Q 026378 154 AVYVRTDKGVLFEVKPHV 171 (239)
Q Consensus 154 ~VYIhT~~g~lIeVsP~~ 171 (239)
.|+++..+|.++++||.+
T Consensus 14 ~i~~~d~~g~i~~~n~~~ 31 (121)
T 3f1p_B 14 FISRHNIEGIFTFVDHRC 31 (121)
T ss_dssp EEEEECTTSBEEEECTTH
T ss_pred eEEEECCCceEEEECcch
Confidence 389999999999999964
No 9
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=28.17 E-value=1.3e+02 Score=22.11 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=40.5
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCC
Q 026378 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVN 217 (239)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~ 217 (239)
-+||..++|.|+ ..++|+.||-.----.++..|..++... ++ +....|.|..+.-..++|..
T Consensus 54 ~~spA~~aG~L~------~GD~I~~ing~~v~~~~~~~~~~~l~~~------~~--g~~v~l~v~R~~~~~~~~~s 115 (122)
T 1v5q_A 54 ADSPAERCGVLQ------IGDRVMAINGIPTEDSTFEEANQLLRDS------SI--TSKVTLEIEFDVAESVIPSS 115 (122)
T ss_dssp TTSHHHHSCCCC------TTCCEEEETTEESSSSCHHHHHHHHHHH------TT--TTCEEEEEEEECCCSCCCCS
T ss_pred CCChHHHcCCCC------CCCEEEEECCEECCCCCHHHHHHHHHhC------CC--CCeEEEEEEECCccccCCCC
Confidence 369999999999 8999999996322123466666554332 11 23566778777766677653
No 10
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=27.60 E-value=28 Score=23.35 Aligned_cols=39 Identities=5% Similarity=-0.094 Sum_probs=29.7
Q ss_pred EEEEecCCeEEEEcCCC-------------------CCCcchhHHHHHHHHHHHhCcc
Q 026378 155 VYVRTDKGVLFEVKPHV-------------------RLPRTYKRFAGIMLQLLQKLSI 193 (239)
Q Consensus 155 VYIhT~~g~lIeVsP~~-------------------RIPRty~RF~GLM~qLL~k~~I 193 (239)
|+++..+|.++++||.+ --|....++...+.+++..+..
T Consensus 12 i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~ 69 (117)
T 3f1p_A 12 LSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQV 69 (117)
T ss_dssp EEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEE
T ss_pred EEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCe
Confidence 88999999999999853 2355566777777788876654
No 11
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=27.11 E-value=72 Score=23.31 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=28.6
Q ss_pred cchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHH
Q 026378 143 DSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIML 185 (239)
Q Consensus 143 DSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~ 185 (239)
+||..++|+|+ ..+++++||-.----.|+..|..++.
T Consensus 46 gspA~~aG~L~------~GD~Il~ING~~v~~~~~~~~~~~l~ 82 (97)
T 2ejy_A 46 GGMIHRQGSLH------VGDEILEINGTNVTNHSVDQLQKAMK 82 (97)
T ss_dssp SSHHHHHTCCC------TTCEEEEETTBCCCSSCSHHHHHHHH
T ss_pred CCHHHHcCCCC------CCCEEEEECCEECCCCCHHHHHHHHH
Confidence 69999999999 99999999964332236788777665
No 12
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=26.24 E-value=66 Score=22.43 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=28.6
Q ss_pred cchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHH
Q 026378 143 DSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIML 185 (239)
Q Consensus 143 DSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~ 185 (239)
+||..++|+|+ ..+++++||-.----.++..+..++.
T Consensus 31 gspA~~aG~L~------~GD~Il~ing~~v~~~~~~~~~~~i~ 67 (88)
T 3e17_A 31 TGLATKDGNLH------EGDIILKINGTVTENMSLTDARKLIE 67 (88)
T ss_dssp TSHHHHHCCCC------TTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCHHHHcCCCC------CCCEEEEECCEECCCCCHHHHHHHHH
Confidence 68999999999 89999999976443457776665544
No 13
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=25.98 E-value=68 Score=22.27 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=28.3
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHH
Q 026378 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIM 184 (239)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM 184 (239)
-+||..++|+|+ ..+++++||-.----.++..+..++
T Consensus 37 ~gspA~~aG~L~------~GD~I~~ing~~v~~~~~~~~~~~l 73 (93)
T 3o46_A 37 RGGAADRSGLIH------VGDELREVNGIPVEDKRPEEIIQIL 73 (93)
T ss_dssp TTSHHHHHTCCC------TTCEEEEETTEESTTSCHHHHHHHH
T ss_pred CCCHHHHcCCCC------CCCEEEEECCEECCCCCHHHHHHHH
Confidence 479999999999 9999999996543335666666544
No 14
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=24.27 E-value=89 Score=22.21 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=28.1
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHHH
Q 026378 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQ 186 (239)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~q 186 (239)
-+||..++|+|+ ..++|++||-.----.++..+..+|..
T Consensus 43 ~~spA~~aG~L~------~GD~Il~ing~~v~~~~~~~~~~~l~~ 81 (103)
T 1uep_A 43 AMGSADRDGRLH------PGDELVYVDGIPVAGKTHRYVIDLMHH 81 (103)
T ss_dssp TTSTTGGGTCCC------TTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred CCChHHhCCCCC------CCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 479999999999 899999999653322356666555543
No 15
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=22.01 E-value=1.1e+02 Score=22.21 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=27.6
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHH
Q 026378 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIM 184 (239)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM 184 (239)
-+||..++|+|+ ..++|++||-.----.++..+..+|
T Consensus 50 ~~s~A~~aG~l~------~GD~Il~Vng~~~~~~~~~~~~~~l 86 (109)
T 1wi4_A 50 PGGDCYKDGRLK------PGDQLVSINKESMIGVSFEEAKSII 86 (109)
T ss_dssp TTSHHHHHCSCC------TTCBEEEETTSCCTTCCHHHHHHHH
T ss_pred CCChHHHCCCCC------CCCEEEEECCEECCCCCHHHHHHHH
Confidence 579999999999 9999999997643334555554443
No 16
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=21.09 E-value=98 Score=21.13 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=28.2
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHHH
Q 026378 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQ 186 (239)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~q 186 (239)
-+||..++|.|+ ..+++++||-.----.++..+..++..
T Consensus 36 ~~spA~~aG~L~------~GD~I~~ing~~v~~~~~~~~~~~l~~ 74 (90)
T 2q9v_A 36 PLGAADTDGRLR------SGDELISVDGTPVIGKSHQLVVQLMQQ 74 (90)
T ss_dssp TTSHHHHHCCCC------TTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred CCChHHHCCCCC------CCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 369999999999 899999999653333456665555543
No 17
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.74 E-value=1.4e+02 Score=22.02 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=39.8
Q ss_pred hcchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCCC
Q 026378 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNS 218 (239)
Q Consensus 142 LDSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~~ 218 (239)
-+||..++|+|+ ..++|++||-.-----++..+..++ +.. ++ +....|.|..+.-..+.|.++
T Consensus 53 ~~spA~~aG~L~------~GD~Il~Vng~~v~~~~~~~~~~~l----~~~--~~--g~~v~l~v~R~~~~~~~~~~~ 115 (123)
T 1ueq_A 53 PDGPAAQDGKME------TGDVIVYINEVCVLGHTHADVVKLF----QSV--PI--GQSVNLVLCRGYPLPFDPEDP 115 (123)
T ss_dssp TTSHHHHTSCCC------TTCEEEEETTEECTTSCHHHHHHHH----HTS--CT--TCEEEEEEEESCCCCCCSSCS
T ss_pred CCCHHHHCCCCC------CCCEEEEECCEECCCCCHHHHHHHH----HhC--CC--CCeEEEEEEeCCCCCCCCCCC
Confidence 479999999999 8999999996422222455544433 321 11 245667887776555655544
Done!