BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026379
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RFL|A Chain A, Crystal Structure Of The Putative Phosphohistidine
Phosphatase Sixa From Agrobacterium Tumefaciens
pdb|2RFL|B Chain B, Crystal Structure Of The Putative Phosphohistidine
Phosphatase Sixa From Agrobacterium Tumefaciens
pdb|2RFL|C Chain C, Crystal Structure Of The Putative Phosphohistidine
Phosphatase Sixa From Agrobacterium Tumefaciens
pdb|2RFL|D Chain D, Crystal Structure Of The Putative Phosphohistidine
Phosphatase Sixa From Agrobacterium Tumefaciens
pdb|2RFL|E Chain E, Crystal Structure Of The Putative Phosphohistidine
Phosphatase Sixa From Agrobacterium Tumefaciens
pdb|2RFL|F Chain F, Crystal Structure Of The Putative Phosphohistidine
Phosphatase Sixa From Agrobacterium Tumefaciens
pdb|2RFL|G Chain G, Crystal Structure Of The Putative Phosphohistidine
Phosphatase Sixa From Agrobacterium Tumefaciens
pdb|2RFL|H Chain H, Crystal Structure Of The Putative Phosphohistidine
Phosphatase Sixa From Agrobacterium Tumefaciens
Length = 173
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 63 SVARRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVR 122
S R+ LLRHAK++W P RD DR L++AG +A ++ + P LILSS A R
Sbjct: 6 SFPTRVYLLRHAKAAWAAPGERDFDRGLNEAGFAEAEIIADLAADRRYRPDLILSSTAAR 65
Query: 123 TRQTLEIMQQHVQGFLEA-EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMG 181
RQT + Q + F E ++ +I Y+ +E I ++ E+ +V +G
Sbjct: 66 CRQTTQAWQ---RAFNEGIDIVYIDEXYNA------RSETYLSLIA--AQTEVQSVXLVG 114
Query: 182 HN 183
HN
Sbjct: 115 HN 116
>pdb|4HBZ|A Chain A, The Structure Of Putative Phosphohistidine Phosphatase
Sixa From Nakamurella Multipartitia
Length = 186
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 37/175 (21%)
Query: 61 DQSVARRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIP--QLILSS 118
D + AR L+L RHA + ++RDHDRPL+ G A Q L+ G +P +++ S
Sbjct: 15 DPAGARTLVLXRHAAAG---SAVRDHDRPLTPDGVRAATAAGQWLR--GHLPAVDVVVCS 69
Query: 119 DAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVM 178
A RTRQTL + A+V + Y G + + + D TV+
Sbjct: 70 TAARTRQTLAATG------ISAQVRYRDELY------GGGVDEILAEVAAVPADAS-TVL 116
Query: 179 CMGH-----NRGWE--------EAASMFTGAFIELKTCNA---ALLETTGKSWEE 217
+GH GWE A +GA EL+ A A+L TTG +W +
Sbjct: 117 VVGHAPTIPATGWELVRQSLLNRDADPSSGAGDELRHFAAGTFAVLSTTG-AWAD 170
>pdb|3F2I|A Chain A, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|B Chain B, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|C Chain C, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|D Chain D, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|E Chain E, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|F Chain F, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422
Length = 172
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 68 LILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTL 127
L L+RH + + ++D +R L++ G+ KV+ RL +LG LI++S +R RQT
Sbjct: 3 LYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTA 62
Query: 128 EIM 130
EI+
Sbjct: 63 EIL 65
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 67 RLILLRHAKSSWEFPSLRD--HDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTR 124
+L+L+RH +S W +L D LS G D+A++ L+Q G+ + SS R
Sbjct: 29 KLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRAN 88
Query: 125 QTLEIMQQHV-QGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEIL 175
TL I+ + + Q ++ + + + A+ G + KY D++L
Sbjct: 89 DTLNIILRELGQSYISVKKTWRLNERHYGALQGLNK---SETAAKYGEDKVL 137
>pdb|1YFK|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YFK|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|C Chain C, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|D Chain D, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|E Chain E, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|F Chain F, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|G Chain G, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|H Chain H, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|I Chain I, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|J Chain J, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|K Chain K, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|L Chain L, Crystal Structure Of Human B Type Phosphoglycerate Mutase
Length = 262
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 65 ARRLILLRHAKSSWEFPSLRD--HDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVR 122
A +L+L+RH +S+W + +D LS AG ++A + Q L+ G+ + +S R
Sbjct: 3 AYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKR 62
Query: 123 TRQTL 127
+TL
Sbjct: 63 AIRTL 67
>pdb|4PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|1BQ3|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ4|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|5PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|F Chain F, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|G Chain G, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|H Chain H, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|E Chain E, Saccharomyces Cerevisiae Phosphoglycerate Mutase
Length = 246
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 67 RLILLRHAKSSWEFPSLRDH--DRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTR 124
+L+L+RH +S W +L D LS GQ +A + + L++ P ++ +S R
Sbjct: 2 KLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAI 61
Query: 125 QTLEI 129
QT I
Sbjct: 62 QTANI 66
>pdb|1QHF|A Chain A, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
pdb|1QHF|B Chain B, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
Length = 240
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 67 RLILLRHAKSSWEFPSLRDH--DRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTR 124
+L+L+RH +S W +L D LS GQ +A + + L++ P ++ +S R
Sbjct: 2 KLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAI 61
Query: 125 QTLEI 129
QT I
Sbjct: 62 QTANI 66
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 75 KSSWEFPSLRDHDRPLSKAGQDDAIKVSQ----RLQQ--LGWIPQLILSSDAVRTRQTLE 128
KS++ L D DR L + +D A V Q RL+ GW L S+ + L
Sbjct: 11 KSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLG 70
Query: 129 IMQQHVQGFLEAEVHFISSFYSVAAMD 155
++ H+QG+ A + +S Y +A M+
Sbjct: 71 VLGMHLQGYGCAGTNAVS--YGLACME 95
>pdb|1H2E|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Phosphate
pdb|1H2F|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Trivanadate
Length = 207
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 65 ARRLILLRHAKSSWEFPSLRD--HDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVR 122
A L L RH ++ W D PL++ G+ DA+++ +RL+ + I +S + R
Sbjct: 1 ATTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAA--IYTSTSGR 58
Query: 123 TRQTLEIMQ 131
+T EI++
Sbjct: 59 ALETAEIVR 67
>pdb|1EBB|A Chain A, Bacillus Stearothermophilus Yhfr
Length = 202
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 65 ARRLILLRHAKSSWEFPSLRD--HDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVR 122
A L L RH ++ W D PL++ G+ DA+++ +RL+ + I +S + R
Sbjct: 1 ATTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAA--IYTSTSGR 58
Query: 123 TRQTLEIMQ 131
+T EI++
Sbjct: 59 ALETAEIVR 67
>pdb|3KKK|A Chain A, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|B Chain B, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|C Chain C, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|D Chain D, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
Length = 258
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 68 LILLRHAKSSWEFPSLRD--HDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSS 118
L+LLRH +S+W + D PLS+ G+++AI + L++ + ++ +S
Sbjct: 14 LVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTS 66
>pdb|1XQ9|A Chain A, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
pdb|1XQ9|B Chain B, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
Length = 258
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 68 LILLRHAKSSWEFPSLRD--HDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSS 118
L+LLRH +S+W + D PLS+ G+++AI + L++ + ++ +S
Sbjct: 14 LVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTS 66
>pdb|3EZN|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3EZN|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3FDZ|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound
2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
pdb|3GP3|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|C Chain C, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|D Chain D, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP5|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GP5|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GW8|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
pdb|3GW8|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
Length = 257
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 67 RLILLRHAKSSWE----FPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVR 122
+L+L+RH +S+W F D D L++ G +A + Q L++ G+ + +S R
Sbjct: 11 KLVLIRHGESTWNKENRFTGWVDVD--LTEQGNREARQAGQLLKEAGYTFDIAYTSVLKR 68
Query: 123 TRQTLEIMQQHVQGFLEAEVH 143
+TL +Q + VH
Sbjct: 69 AIRTLWHVQDQMDLMYVPVVH 89
>pdb|3LNT|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
pdb|3LNT|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
Length = 250
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 67 RLILLRHAKSSWE----FPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVR 122
+L+L+RH +S+W F D D L++ G +A + Q L++ G+ + +S R
Sbjct: 4 KLVLIRHGESTWNKENRFTGWVDVD--LTEQGNREARQAGQLLKEAGYTFDIAYTSVLKR 61
Query: 123 TRQTLEIMQQHVQGFLEAEVH 143
+TL +Q + VH
Sbjct: 62 AIRTLWHVQDQMDLMYVPVVH 82
>pdb|4EO9|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpm1 From
Mycobacterium Leprae
Length = 268
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 68 LILLRHAKSSWEFPSLRDH--DRPLSKAGQDDAIKVSQRLQQLGWIPQLILSS 118
LILLRH +S W +L D L+ G+ +A++ + L + +P ++ +S
Sbjct: 30 LILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEHNLLPDVLYTS 82
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli
pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
With Ferrous Ions
pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
Length = 319
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 91 SKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHV 134
+K D ++V RL W+P+ + S+ + QTL +++Q +
Sbjct: 12 NKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQL 55
>pdb|2ICI|A Chain A, Crystal Structure Of Streptococcal Pyrogenic Exotoxin I
Length = 227
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 20 WSPPCPSIIKKNYYSSVKREHSGRLASQSLVIETNVTGTAEDQS 63
+SPP S IKKN Y + R+ +++ + + G + S
Sbjct: 76 YSPPSNSNIKKNSYGGITLSDGNRIDKKNIPVNIFIDGVQQKYS 119
>pdb|3P1Z|A Chain A, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|C Chain C, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|E Chain E, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|G Chain G, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|I Chain I, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
pdb|3P1Z|K Chain K, Crystal Structure Of The Aperopyrum Pernix Rna Splicing
Endonuclease
Length = 170
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 177 VMCMGHNRGWEEAASMFTGAFIELKT 202
++CMG RGW A + G + L T
Sbjct: 60 MLCMGETRGWAAAVEVIAGLGLSLDT 85
>pdb|3AJV|A Chain A, Splicing Endonuclease From Aeropyrum Pernix
pdb|3AJV|C Chain C, Splicing Endonuclease From Aeropyrum Pernix
Length = 190
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 177 VMCMGHNRGWEEAASMFTGAFIELKT 202
++CMG RGW A + G + L T
Sbjct: 80 MLCMGETRGWAAAVEVIAGLGLSLDT 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,783,895
Number of Sequences: 62578
Number of extensions: 234432
Number of successful extensions: 497
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 27
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)