BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026381
         (239 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio
          Length = 221

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 19/210 (9%)

Query: 7   PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
           P       +   VE++++G V V PTD+ YA+ C ++  +A ER+ RI+ +      ++ 
Sbjct: 24  PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLX 83

Query: 67  CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
           CR L ++ TY+            N+ FR  K+  PG YTFIL  +KEVP++ ++      
Sbjct: 84  CRDLSELSTYSFV---------DNVAFRLXKNNTPGNYTFILKGTKEVPRRLLQ------ 128

Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
               RK +G R+P++ I QA+L+ +  P +STS+          DP  I D    + +D 
Sbjct: 129 --EKRKTIGXRVPSNPIAQALLEALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQ-VDL 185

Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
           ++ GG    +P+TV+D+T   P ++R+G G
Sbjct: 186 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 215


>pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1
          Length = 206

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 19/210 (9%)

Query: 7   PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
           P       +   VE++++G V V PTD+ YA+ C ++  +A ER+ RI+ +      ++ 
Sbjct: 9   PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLX 68

Query: 67  CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
           CR L ++ TY+            N+ FR  K+  PG YTFIL  +KEVP++ ++      
Sbjct: 69  CRDLSELSTYSF---------VDNVAFRLXKNNTPGNYTFILKGTKEVPRRLLQ------ 113

Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
               RK +G R+P++ I QA+L+ +  P +STS+          DP  I D    + +D 
Sbjct: 114 --EKRKTIGXRVPSNPIAQALLEALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQ-VDL 170

Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
           ++ GG    +P+TV+D+T   P ++R+G G
Sbjct: 171 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200


>pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
           Methanobacterium Thermoautotrophicum
          Length = 208

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 23/203 (11%)

Query: 15  LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
           LE  + +++ G + + PTDT+Y +  +     A+ RL R+K   P KP+SI    + +I 
Sbjct: 16  LEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIP 75

Query: 75  TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
            ++   P GD          ++  LPGPYT +L  ++ +P   +  G++         VG
Sbjct: 76  RFSR--PSGDA------MELMERILPGPYTVVLERNELIP-DVITGGSS--------RVG 118

Query: 135 VRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRV- 193
           +R+P+D IC+ I  +      S ++     +  + +  ++ D    + +D V+D G  + 
Sbjct: 119 IRVPDDEICRRIAARFPVTATSANISGKPPSPRLEE--IVRDL---DAVDLVLDAGDCLD 173

Query: 194 AEPSTVVDMTGTYPKIIRQGKGP 216
            EPSTV+D+T   P+++R+GKGP
Sbjct: 174 MEPSTVIDLTVNPPRVLRRGKGP 196


>pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With
           L-Threonine And Amppnp
          Length = 352

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 19/212 (8%)

Query: 3   VEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 62
           ++ DP   +  K++   ++++ G     PT+T+Y +  +    +A  ++ + KN     P
Sbjct: 5   IKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNP 64

Query: 63  LSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGT 122
           L +       +       P         +    +   PGP TF+L  ++ VPK+ V  G 
Sbjct: 65  LIVHIADFNQLFEVAKDIPD-------KVLEIAQIVWPGPLTFVLKKTERVPKE-VTAGL 116

Query: 123 TTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEG 182
            T        V VR+P   I   ++++   P+ + S              VI D  G   
Sbjct: 117 DT--------VAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNG--R 166

Query: 183 LDFVVDGG-VRVAEPSTVVDMTGTYPKIIRQG 213
           +D ++DGG       ST++++T   P ++R G
Sbjct: 167 VDVIIDGGHTFFGVESTIINVTVEPPVLLRPG 198


>pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From
           Sulfolobus Tokodaii
 pdb|4E1B|A Chain A, Re-Refinement Of Pdb Entry 2eqa - Sua5 Protein From
           Sulfolobus Tokodaii With Bound
           Threonylcarbamoyladenylate
          Length = 352

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 19/212 (8%)

Query: 3   VEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 62
           ++ DP   +  K++   ++++ G     PT+T+Y +  +    +A  ++ + KN     P
Sbjct: 5   IKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNP 64

Query: 63  LSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGT 122
           L +       +       P         +    +   PGP TF+L  ++ VPK+ V  G 
Sbjct: 65  LIVHIADFNQLFEVAKDIPD-------KVLEIAQIVWPGPLTFVLKKTERVPKE-VTAGL 116

Query: 123 TTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEG 182
            T        V VR P   I   ++++   P+ + S              VI D  G   
Sbjct: 117 DT--------VAVRXPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNG--R 166

Query: 183 LDFVVDGG-VRVAEPSTVVDMTGTYPKIIRQG 213
           +D ++DGG       ST++++T   P ++R G
Sbjct: 167 VDVIIDGGHTFFGVESTIINVTVEPPVLLRPG 198


>pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli
 pdb|1HRU|B Chain B, The Structure Of The Yrdc Gene Product From E.Coli
          Length = 188

 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 14/142 (9%)

Query: 19  VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
           +++L E  V   PT+ ++ + CD  S +A+ RL  +K     K L ++  +   +  Y  
Sbjct: 14  IDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQLKPYID 73

Query: 79  GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
                D Q      R      PGP TF+  A    P+        T ++     + VR+ 
Sbjct: 74  DTXLTDVQRETIFSR-----WPGPVTFVFPAPATTPRWL------TGRFD---SLAVRVT 119

Query: 139 NDAICQAILQKMDAPLISTSVK 160
           +  +  A+ Q    PL+STS  
Sbjct: 120 DHPLVVALCQAYGKPLVSTSAN 141


>pdb|2DZU|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (D110n) From A Hyperthermophile, Pyrococcus Furiosus
 pdb|2DZU|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (D110n) From A Hyperthermophile, Pyrococcus Furiosus
          Length = 248

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRR 53
           K E VV LLKEGA GVV    L  I+ + K   A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240


>pdb|2DZP|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (D17n) From A Hyperthermophile, Pyrococcus Furiosus
 pdb|2DZP|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (D17n) From A Hyperthermophile, Pyrococcus Furiosus
          Length = 248

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRR 53
           K E VV LLKEGA GVV    L  I+ + K   A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240


>pdb|2DZX|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (E131- 132a) From A Hyperthermophile, Pyrococcus
           Furiosus
 pdb|2DZX|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (E131- 132a) From A Hyperthermophile, Pyrococcus
           Furiosus
          Length = 248

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRR 53
           K E VV LLKEGA GVV    L  I+ + K   A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240


>pdb|2DZV|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (D146a) From A Hyperthermophile, Pyrococcus Furiosus
 pdb|2DZV|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (D146a) From A Hyperthermophile, Pyrococcus Furiosus
          Length = 248

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRR 53
           K E VV LLKEGA GVV    L  I+ + K   A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240


>pdb|2DZT|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (D110a) From A Hyperthermophile, Pyrococcus Furiosus
 pdb|2DZT|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (D110a) From A Hyperthermophile, Pyrococcus Furiosus
          Length = 248

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRR 53
           K E VV LLKEGA GVV    L  I+ + K   A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240


>pdb|2E09|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (E74a) From A Hyperthermophile, Pyrococcus Furiosus
 pdb|2E09|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (E74a) From A Hyperthermophile, Pyrococcus Furiosus
          Length = 248

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRR 53
           K E VV LLKEGA GVV    L  I+ + K   A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240


>pdb|2DZW|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (E244a) From A Hyperthermophile, Pyrococcus Furiosus
 pdb|2DZW|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (E244a) From A Hyperthermophile, Pyrococcus Furiosus
          Length = 248

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRR 53
           K E VV LLKEGA GVV    L  I+ + K   A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240


>pdb|2DZS|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (E103a) From A Hyperthermophile, Pyrococcus Furiosus
 pdb|2DZS|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
           (E103a) From A Hyperthermophile, Pyrococcus Furiosus
          Length = 248

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRR 53
           K E VV LLKEGA GVV    L  I+ + K   A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240


>pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase
           A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
           X-Ray Analysis And Calorimetry
 pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptophan Synthase
           A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
           X-Ray Analysis And Calorimetry
 pdb|1WDW|A Chain A, Structural Basis Of Mutual Activation Of The Tryptophan
           Synthase A2b2 Complex From A Hyperthermophile,
           Pyrococcus Furiosus
 pdb|1WDW|C Chain C, Structural Basis Of Mutual Activation Of The Tryptophan
           Synthase A2b2 Complex From A Hyperthermophile,
           Pyrococcus Furiosus
 pdb|1WDW|E Chain E, Structural Basis Of Mutual Activation Of The Tryptophan
           Synthase A2b2 Complex From A Hyperthermophile,
           Pyrococcus Furiosus
 pdb|1WDW|G Chain G, Structural Basis Of Mutual Activation Of The Tryptophan
           Synthase A2b2 Complex From A Hyperthermophile,
           Pyrococcus Furiosus
 pdb|1WDW|I Chain I, Structural Basis Of Mutual Activation Of The Tryptophan
           Synthase A2b2 Complex From A Hyperthermophile,
           Pyrococcus Furiosus
 pdb|1WDW|K Chain K, Structural Basis Of Mutual Activation Of The Tryptophan
           Synthase A2b2 Complex From A Hyperthermophile,
           Pyrococcus Furiosus
          Length = 248

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRR 53
           K E VV LLKEGA GVV    L  I+ + K   A E L++
Sbjct: 202 KREHVVSLLKEGANGVVVGSALVKIIGE-KGREATEFLKK 240


>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From
           Trypanosoma Brucei
 pdb|13PK|B Chain B, Ternary Complex Of Phosphoglycerate Kinase From
           Trypanosoma Brucei
 pdb|13PK|C Chain C, Ternary Complex Of Phosphoglycerate Kinase From
           Trypanosoma Brucei
 pdb|13PK|D Chain D, Ternary Complex Of Phosphoglycerate Kinase From
           Trypanosoma Brucei
 pdb|16PK|A Chain A, Phosphoglycerate Kinase From Trypanosoma Brucei
           Bisubstrate Analog
          Length = 415

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 90  NIFRAVKHCLPG---PYTFILTASKEVPK-KC----VRYGTTTAKYSLRKHVGVRIPNDA 141
           N+ + + + L G    YTF+      + K KC    + +  +  K +  + V V +P D 
Sbjct: 225 NMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDH 284

Query: 142 ICQAILQKMDAPLIS 156
           +C    + +D+PLI+
Sbjct: 285 VCHTEFKAVDSPLIT 299


>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
           And Nucleotide-Bound Form
 pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
           And Nucleotide-Bound Form
 pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
 pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
          Length = 761

 Score = 27.7 bits (60), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 37/211 (17%)

Query: 14  KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDI 73
           +++ V + LKEG +  +     + +  +     A+  LRR K     KP +++ R + ++
Sbjct: 204 EIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKK-RYGKPFAVMMRDVEEV 262

Query: 74  DTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY-GTTTAK--YSLR 130
             Y                     C+  P    L  S+  P   ++  G   AK      
Sbjct: 263 KKY---------------------CIVSPEEERLLLSQRRPIVLLKKKGEKLAKGIADDL 301

Query: 131 KHVGVRIPNDAICQAILQKMDAPLISTSVK-----WLKDNEWMVDPVV-IADTYGPEGLD 184
             +GV +P   I   +++++D P++ TS         KDNE  ++ +  IAD +     D
Sbjct: 302 DTLGVMLPYAPIHYLLMEEIDFPIVMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRD 361

Query: 185 FVVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
            V     R+ +  +V        +IIR+ +G
Sbjct: 362 IV----NRIDD--SVTSFNAGAERIIRRARG 386


>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
           Nonribosomal Peptide Synthetase Termination Module
          Length = 1304

 Score = 26.9 bits (58), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 57  VEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHC 98
           ++P+ P  I+  S       TTG P+G+   HANI   VKH 
Sbjct: 604 IDPNDPAYIMYTS------GTTGKPKGNITTHANIQGLVKHV 639


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,981,470
Number of Sequences: 62578
Number of extensions: 344775
Number of successful extensions: 872
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 24
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)