BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026381
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0AFR6|YCIO_SHIFL Uncharacterized protein YciO OS=Shigella flexneri GN=yciO PE=3 SV=1
Length = 206
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 19/210 (9%)
Query: 7 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
P + VE++++G V V PTD+ YA+ C ++ +A+ER+ RI+ + +++
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM 68
Query: 67 CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
CR L ++ TY+ N+ FR +K+ PG YTFIL +KEVP++ ++
Sbjct: 69 CRDLSELSTYSF---------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ------ 113
Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
RK +G+R+P++ I QA+L+ + P++STS+ DP I D + +D
Sbjct: 114 --EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ-VDL 170
Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
++ GG +P+TV+D+T P ++R+G G
Sbjct: 171 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200
>sp|P0AFR4|YCIO_ECOLI Uncharacterized protein YciO OS=Escherichia coli (strain K12)
GN=yciO PE=1 SV=1
Length = 206
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 19/210 (9%)
Query: 7 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
P + VE++++G V V PTD+ YA+ C ++ +A+ER+ RI+ + +++
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM 68
Query: 67 CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
CR L ++ TY+ N+ FR +K+ PG YTFIL +KEVP++ ++
Sbjct: 69 CRDLSELSTYSF---------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ------ 113
Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
RK +G+R+P++ I QA+L+ + P++STS+ DP I D + +D
Sbjct: 114 --EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ-VDL 170
Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
++ GG +P+TV+D+T P ++R+G G
Sbjct: 171 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200
>sp|P0AFR5|YCIO_ECOL6 Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yciO PE=3 SV=1
Length = 206
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 19/210 (9%)
Query: 7 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
P + VE++++G V V PTD+ YA+ C ++ +A+ER+ RI+ + +++
Sbjct: 9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM 68
Query: 67 CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
CR L ++ TY+ N+ FR +K+ PG YTFIL +KEVP++ ++
Sbjct: 69 CRDLSELSTYSF---------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ------ 113
Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
RK +G+R+P++ I QA+L+ + P++STS+ DP I D + +D
Sbjct: 114 --EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ-VDL 170
Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
++ GG +P+TV+D+T P ++R+G G
Sbjct: 171 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200
>sp|P45103|Y1198_HAEIN Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1198 PE=3 SV=1
Length = 207
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 115/210 (54%), Gaps = 18/210 (8%)
Query: 7 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
P + + VE+L++G V V PTD+ YA+ C + A++R+ I+ + +++
Sbjct: 9 PENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLV 68
Query: 67 CRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAK 126
C L ++ TY + + +R +K+ PG YTFILTA+KE+P++ + T+K
Sbjct: 69 CSDLSELSTY--------ARVNNTAYRLIKNNTPGRYTFILTATKELPRRLM-----TSK 115
Query: 127 YSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKW-LKDNEWMVDPVVIADTYGPEGLDF 185
RK +G+R+P++ I +L + P++S S+ +++ DP I D + +D
Sbjct: 116 ---RKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQ-VDL 171
Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
++ GG EP+TVVD+T P I+R+G G
Sbjct: 172 IIHGGYLGQEPTTVVDLTEESPVILREGSG 201
>sp|Q0VTD8|RIMN_ALCBS tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 /
DSM 11573) GN=rimN PE=3 SV=1
Length = 182
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 20/184 (10%)
Query: 20 ELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG 79
++++EG V PT+++Y + CD + +A+ +L IK+ SK L ++ SL + Y
Sbjct: 10 QIIQEGGVVAYPTESVYGLGCDPFNRNAVMQLLAIKHRPVSKGLILIGESLAQLAPYLHL 69
Query: 80 FPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPN 139
+ Q ++ P P T+++ AS +P VR + V VR+P+
Sbjct: 70 NEQQSAQ--------LEKKWPAPITYLVDASDRLP-AWVR--------GEHRKVAVRVPD 112
Query: 140 DAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPST 198
+ + + Q P+ISTS + + +A G + LDF+V G R A+PST
Sbjct: 113 HPLARQLCQLAGQPIISTSAN-ISGRPAARNRYQVARQLGNQ-LDFIVSGACDRAAKPST 170
Query: 199 VVDM 202
++D+
Sbjct: 171 IIDL 174
>sp|Q0VC80|YRDC_BOVIN YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC
PE=2 SV=1
Length = 276
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 20/144 (13%)
Query: 15 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
L V L+ GAV VPTDTLY + C A+ + R+K +KPL++ + D+
Sbjct: 68 LRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVY 127
Query: 75 TYTTGFPRGDGQGHANIFRA-VKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHV 133
Y H + +K LPGP T ++ S+E+ K + V
Sbjct: 128 RYC----------HVRVPEGLLKDLLPGPVTLVMERSEELNKDLNPF---------TPLV 168
Query: 134 GVRIPNDAICQAILQKMDAPLIST 157
G+RIP+ A Q + Q PL T
Sbjct: 169 GIRIPDHAFMQDLAQMFGGPLALT 192
>sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus
GN=Yrdc PE=2 SV=1
Length = 280
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 3 VEADPSGADSW--KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
VEA W L V L+ GAV VPTDTLY + C +A+ + R+K +
Sbjct: 57 VEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEA 116
Query: 61 KPLSILCRSLRDIDTYT-TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVR 119
KPL++ + D+ Y PR ++ PGP T ++ S+E+ K
Sbjct: 117 KPLAVCLGRVADVYRYCQVRVPR----------ELLEDLFPGPVTLVMERSEELNKDLNP 166
Query: 120 YGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYG 179
+ VG+RIP+ A + Q PL TS L + D +
Sbjct: 167 F---------TPLVGIRIPDHAFMLDLAQMFGGPLALTSAN-LSSQASSLSVEEFQDLW- 215
Query: 180 PEGLDFVVDGG---------VRVAEPSTVVDMT--GTYPKIIRQG 213
P L V+DGG R+ STVVD++ G + IIR G
Sbjct: 216 PH-LSLVIDGGPIGDSESPECRLG--STVVDLSVPGKF-GIIRSG 256
>sp|A6WHB6|RIMN_SHEB8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella baltica (strain OS185) GN=rimN PE=3 SV=1
Length = 188
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 23/205 (11%)
Query: 14 KLEP--VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 71
+L P + +++ +G V PT+ +Y + CD + +AI++L +K K L ++ +
Sbjct: 3 QLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQ 62
Query: 72 DIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLR 130
+ Y + Q A PGP+TF++ V K C + + + S
Sbjct: 63 QLLAYVD-----ESQLTAEQLEFAFSKWPGPFTFVMPIKAHVSKYLCGEFDSIAVRVS-- 115
Query: 131 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 190
H GV+ A+C+A ++ PL+STS ++ + ++AD G +D +V G
Sbjct: 116 AHAGVQ----ALCRA----LNKPLVSTSANLAGEDPALTAAEILADFTGK--IDALVLGE 165
Query: 191 V-RVAEPSTVVDMTGTYPKIIRQGK 214
+ +PST++D KI+R G+
Sbjct: 166 LGEQRQPSTIIDARSG--KILRNGQ 188
>sp|A3CYL0|RIMN_SHEB5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
GN=rimN PE=3 SV=1
Length = 188
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 23/205 (11%)
Query: 14 KLEP--VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 71
+L P + +++ +G V PT+ +Y + CD + +AI++L +K K L ++ +
Sbjct: 3 QLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQ 62
Query: 72 DIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLR 130
+ Y + Q A PGP+TF++ V K C + + + S
Sbjct: 63 QLLAYVD-----ESQLTAEQLEFAFSKWPGPFTFVMPIKAHVSKYLCGEFDSIAVRVS-- 115
Query: 131 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 190
H GV+ A+C+A ++ PL+STS ++ + ++AD G +D +V G
Sbjct: 116 AHAGVQ----ALCRA----LNKPLVSTSANLAGEDPALTAAEILADFTGK--IDALVLGE 165
Query: 191 V-RVAEPSTVVDMTGTYPKIIRQGK 214
+ +PST++D KI+R G+
Sbjct: 166 LGEQRQPSTIIDARSG--KILRNGQ 188
>sp|A1RDY7|RIMN_SHESW tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain W3-18-1) GN=rimN PE=3 SV=1
Length = 188
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 21/199 (10%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
+ +++ G V PT+ +Y + CD + +AI++L +K K L ++ + + Y
Sbjct: 9 IKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYV 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLRKHVGVR 136
+ Q A PGP+TF++ +V K C + + + S H GV+
Sbjct: 69 D-----ESQLTAEQLEFAFSKWPGPFTFVMPIKAQVSKYLCGEFDSIAVRVS--AHAGVQ 121
Query: 137 IPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAE 195
A+C+A ++ PL+STS ++ + ++AD G +D +V G + +
Sbjct: 122 ----ALCRA----LNKPLVSTSANLAGEDPALTAAEILADFTGK--IDALVLGELGEQRQ 171
Query: 196 PSTVVDMTGTYPKIIRQGK 214
PST++D KI+R G+
Sbjct: 172 PSTIIDARSG--KILRNGQ 188
>sp|A4Y1D2|RIMN_SHEPC tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
GN=rimN PE=3 SV=1
Length = 188
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 21/199 (10%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
+ +++ G V PT+ +Y + CD + +AI++L +K K L ++ + + Y
Sbjct: 9 IKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYV 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLRKHVGVR 136
+ Q A PGP+TF++ +V K C + + + S H GV+
Sbjct: 69 D-----ESQLTAEQLEFAFSKWPGPFTFVMPIKAQVSKYLCGEFDSIAVRVS--AHAGVQ 121
Query: 137 IPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAE 195
A+C+A ++ PL+STS ++ + ++AD G +D +V G + +
Sbjct: 122 ----ALCRA----LNKPLVSTSANLAGEDPALTAAEILADFTGK--IDALVLGELGEQRQ 171
Query: 196 PSTVVDMTGTYPKIIRQGK 214
PST++D KI+R G+
Sbjct: 172 PSTIIDARSG--KILRNGQ 188
>sp|A9KUA7|RIMN_SHEB9 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella baltica (strain OS195) GN=rimN PE=3 SV=1
Length = 188
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 21/199 (10%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
+ +++ +G V PT+ +Y + CD + +AI +L +K K L ++ + + Y
Sbjct: 9 IKDIILQGGVIAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASDFQQLLAYV 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLRKHVGVR 136
+ Q A PGP+TF++ +V K C + + + S H GV+
Sbjct: 69 D-----ESQLTAEQLEFAFSKWPGPFTFVMPIKAQVSKYLCGEFDSIAVRVS--AHAGVQ 121
Query: 137 IPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAE 195
A+C+A ++ PL+STS ++ + ++AD G +D +V G + +
Sbjct: 122 ----ALCRA----LNKPLVSTSANLAGEDPALTAAEILADFTGK--IDALVLGELGEQRQ 171
Query: 196 PSTVVDMTGTYPKIIRQGK 214
PST++D KI+R G+
Sbjct: 172 PSTIIDARSG--KILRNGQ 188
>sp|Q86U90|YRDC_HUMAN YrdC domain-containing protein, mitochondrial OS=Homo sapiens
GN=YRDC PE=1 SV=1
Length = 279
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 37/211 (17%)
Query: 15 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
L V L+ GAV VPTDTLY + C +A+ + R+K +KPL++ + D+
Sbjct: 70 LRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVY 129
Query: 75 TYT-TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHV 133
Y P G +K LPGP T ++ S+E+ K + V
Sbjct: 130 RYCRVRVPEG----------LLKDLLPGPVTLVMERSEELNKDLNPFTPL---------V 170
Query: 134 GVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG--- 190
G+RIP+ A Q + Q + PL TS L ++ D + P+ L V+DGG
Sbjct: 171 GIRIPDHAFMQDLAQMFEGPLALTSAN-LSSQASSLNVEEFQDLW-PQ-LSLVIDGGQIG 227
Query: 191 ------VRVAEPSTVVDMT--GTYPKIIRQG 213
R+ STVVD++ G + IIR G
Sbjct: 228 DGQSPECRLG--STVVDLSVPGKF-GIIRPG 255
>sp|Q60369|Y062_METJA Uncharacterized protein MJ0062 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0062 PE=3 SV=1
Length = 207
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 35/207 (16%)
Query: 18 VVELLKE----GAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDI 73
V+E LK+ G + + TDTLY I + + A+ ++ IK E +KPLSI R +I
Sbjct: 21 VLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEI 80
Query: 74 DTYTTGFPRGDGQGHANIF--RAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRK 131
+ Y + N + + LPGP T IL +P AK
Sbjct: 81 EKY----------AYVNDLAKKIIDKFLPGPLTIILKKKPGIP-------DIVAK----D 119
Query: 132 HVGVRIPNDAICQAILQKMDAPLISTSVKWL-KDNEWMVDPVVIADTYGPEGLDFVVD-G 189
++G+RIP++ I + + PL +TS K++ VD + D + +D+V+D G
Sbjct: 120 YIGIRIPDEPIIREL---SIVPLTTTSANISGKESPTTVDEI---DKEVLKKVDYVIDIG 173
Query: 190 GVRVAEPSTVVDMTGTYPKIIRQGKGP 216
+ ++PST++ + IR+G P
Sbjct: 174 KCKYSKPSTIIKIEDDKIISIREGVIP 200
>sp|A8GYH9|RIMN_SHEPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=rimN PE=3 SV=1
Length = 187
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 23/197 (11%)
Query: 20 ELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG 79
EL+++G V PT+ +Y + CD + AI +L +IK K L ++ + + Y
Sbjct: 11 ELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPYID- 69
Query: 80 FPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPN 139
+ Q +A + PGP+TFI+ V+ G + + VR+
Sbjct: 70 ----ESQLNAQQLAFAQSKWPGPFTFIMP---------VKPGLSKLLSGAFDSIAVRVTA 116
Query: 140 DAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGL--DFVVDGGVRVAEPS 197
A +A+ + P++STS L E + P+ + + EG+ VV A PS
Sbjct: 117 HAGVKALCAAIHKPIVSTSAN-LSGQEPALSPLAVKQQF--EGIISGLVVGELGSQASPS 173
Query: 198 TVVDM-TGTYPKIIRQG 213
T++D +GT +IR+G
Sbjct: 174 TIIDARSGT---VIREG 187
>sp|Q7MGL3|RIMN_VIBVY tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain YJ016) GN=rimN PE=3 SV=2
Length = 186
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 18/155 (11%)
Query: 14 KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDI 73
L+ VV+ LK+G V PT+ ++ + CD + AIERL IK K L ++ + +
Sbjct: 4 NLQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQL 63
Query: 74 DTY--TTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRK 131
Y T A + V PGPYT+++ AS Y R+
Sbjct: 64 QPYLDLTSL-------SAEQLQRVFATWPGPYTWVMPASARASALVTGY---------RQ 107
Query: 132 HVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNE 166
V VR+ + + Q + + PL STS E
Sbjct: 108 TVAVRVSDHPLVQKLCSEYGKPLTSTSANLSGQTE 142
>sp|Q8DDD6|RIMN_VIBVU tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio
vulnificus (strain CMCP6) GN=rimN PE=3 SV=1
Length = 186
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 18/155 (11%)
Query: 14 KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDI 73
L+ VV+ LK+G V PT+ ++ + CD + AIERL IK K L ++ + +
Sbjct: 4 NLQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQL 63
Query: 74 DTY--TTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRK 131
Y T A + V PGPYT+++ AS Y R+
Sbjct: 64 QPYLDLTSL-------SAEQLQRVFATWPGPYTWVMPASARASALVTGY---------RQ 107
Query: 132 HVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNE 166
V VR+ + + Q + + PL STS E
Sbjct: 108 TVAVRVSDHPLVQKLCSEYGKPLTSTSANLSGQTE 142
>sp|B0TLD6|RIMN_SHEHH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella halifaxensis (strain HAW-EB4) GN=rimN PE=3
SV=1
Length = 187
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 17/196 (8%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
V EL+++G V PT+ +Y + CD + AIERL IK K L ++ + + Y
Sbjct: 9 VAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYI 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRI 137
+ Q A V PGP+TFI+ V+ G + + VR+
Sbjct: 69 D-----ESQLSAEQLAFVHSKWPGPFTFIMP---------VKPGLSNLLSGSFDSIAVRV 114
Query: 138 PNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPS 197
+A+ ++ P++STS + + V G + D G++ A PS
Sbjct: 115 TAHEGVKALCAAINKPIVSTSANLTGQDPALSGAAVKQQFEGIIAGLVIGDLGIQ-ASPS 173
Query: 198 TVVDMTGTYPKIIRQG 213
T++D ++IR+G
Sbjct: 174 TIIDAKSG--QVIRKG 187
>sp|B1KCX0|RIMN_SHEWM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rimN
PE=3 SV=1
Length = 185
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
V ++++ G V PT+ +Y + CD + +AI +L IK K L ++ + + Y
Sbjct: 9 VKQVIESGGVVAYPTEAVYGLGCDPDNDAAITKLLAIKKRPWEKGLILVASDYQQLLPYI 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRI 137
D Q V PGP+TFI+ ++ G + + VR+
Sbjct: 69 D-----DSQLTEEQRERVFSKWPGPFTFIMP---------IKPGISNLLCGSFNSLAVRV 114
Query: 138 PNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEP 196
+ QAI Q++ PL+STS + M ++A G +D +V G + +P
Sbjct: 115 SDHPTIQAICQQLGKPLVSTSANHSGEEPAMSHEEILAKFEGE--IDALVAGSLGEQRKP 172
Query: 197 STVVDMTGTYPKIIR 211
ST++D KI+R
Sbjct: 173 STIIDAISG--KILR 185
>sp|A9KH21|RIMN_COXBN tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rimN
PE=3 SV=1
Length = 186
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
V+ L++G V PT+ +Y + CD +H A+ +L IK K ++ + ++ T
Sbjct: 12 VKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVEPLTE 71
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D + A +F PGP+T+ ASKE P +T A +R+
Sbjct: 72 PI---DPKALARVF----DTWPGPFTWTFPASKEAPHWITGQHSTIA---------IRVT 115
Query: 139 NDAICQAILQKMDAPLISTSVK 160
+ + + Q+ PLIS+S
Sbjct: 116 AHPLAKLLCQRFAGPLISSSAN 137
>sp|Q83AA2|RIMN_COXBU tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase
I) GN=rimN PE=3 SV=1
Length = 186
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
V+ L++G V PT+ +Y + CD +H A+ +L IK K ++ + ++ T
Sbjct: 12 VKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVEPLTE 71
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D + A +F PGP+T+ ASKE P +T A +R+
Sbjct: 72 PI---DPKALARVF----DTWPGPFTWTFPASKEAPHWITGQHSTIA---------IRVT 115
Query: 139 NDAICQAILQKMDAPLISTSVK 160
+ + + Q+ PLIS+S
Sbjct: 116 AHPLAKLLCQRFAGPLISSSAN 137
>sp|A9N9G8|RIMN_COXBR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Coxiella burnetii (strain RSA 331 / Henzerling II)
GN=rimN PE=3 SV=1
Length = 186
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
V+ L++G V PT+ +Y + CD +H A+ +L IK K ++ + ++ T
Sbjct: 12 VKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWKQVEPLTE 71
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D + A +F PGP+T+ ASKE P +T A +R+
Sbjct: 72 PI---DPKALARVF----DTWPGPFTWTFPASKEAPHWITGQHSTIA---------IRVT 115
Query: 139 NDAICQAILQKMDAPLISTSVK 160
+ + + Q+ PLIS+S
Sbjct: 116 AHPLAKLLCQRFAGPLISSSAN 137
>sp|A3QJE8|RIMN_SHELP tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
GN=rimN PE=3 SV=1
Length = 185
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 19/195 (9%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
+VE + +G V PT+ +Y + CD + AI++L +K K L ++ + Y
Sbjct: 9 LVETVLQGGVIAYPTEAVYGLGCDPDNDEAIQKLLDLKQRPWQKGLILVASDFNQLTPYI 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRI 137
+ Q ++ PGP+TFI+ PK R G ++ + VR+
Sbjct: 69 DSSVLTEAQ-----LQSAFDKWPGPFTFIM------PK---RPGLSSLLSGQFDSLAVRV 114
Query: 138 PNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVA-EP 196
N QA+ Q + P++STS + + VI G +D +V G + +P
Sbjct: 115 SNHPGVQALCQALGKPIVSTSANLTGEEPALTPEEVIRQFDG--KIDGLVAGSLGAEPKP 172
Query: 197 STVVDMTGTYPKIIR 211
ST++D+ KI+R
Sbjct: 173 STIIDVISG--KILR 185
>sp|A8FP81|RIMN_SHESH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sediminis (strain HAW-EB3) GN=rimN PE=3
SV=1
Length = 185
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
V E++++G V PT+ +Y + CD + AI RL +K K L ++ + + Y
Sbjct: 9 VQEIIEQGGVVAYPTEAVYGLGCDPDNDEAITRLLALKKRPWQKGLILVASDYQQLLPYI 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRI 137
+ Q + + PGP+TFI+ ++ G + + VR+
Sbjct: 69 DESRLTNEQLNKVFVK-----WPGPFTFIMP---------IKPGLSNLLCGSFNSLAVRV 114
Query: 138 PNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVA-EP 196
+ QAI Q++ PL+STS + M +IA G +D ++ G + +P
Sbjct: 115 SSHPTIQAICQRLGKPLVSTSANHAGEPPAMSCEEIIAKFDGE--IDALISGSLGAERKP 172
Query: 197 STVVD 201
ST+VD
Sbjct: 173 STIVD 177
>sp|Q8Z1W6|RIMN_SALTI tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella typhi GN=rimN PE=3 SV=1
Length = 190
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
VV+LL + V PT+ ++ + CD S +A+ RL +K K L ++ S + Y
Sbjct: 13 VVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYI 72
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRI 137
D A +AV C PGP TF+ A P+ T ++ + VR+
Sbjct: 73 D-----DSILTAAQRKAVFDCWPGPVTFVFPAPATTPRWL------TGRFD---SLAVRV 118
Query: 138 PNDAICQAILQKMDAPLISTSVK 160
N + A+ PL+STS
Sbjct: 119 TNHPLVVALCNAYGKPLVSTSAN 141
>sp|Q5PIS8|RIMN_SALPA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=rimN PE=3 SV=1
Length = 190
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
VV+LL + V PT+ ++ + CD S +A+ RL +K K L ++ S + Y
Sbjct: 13 VVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYI 72
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRI 137
D A +AV C PGP TF+ A P+ T ++ + VR+
Sbjct: 73 D-----DSILTAAQRKAVFDCWPGPVTFVFPAPATTPRWL------TGRFD---SLAVRV 118
Query: 138 PNDAICQAILQKMDAPLISTSVK 160
N + A+ PL+STS
Sbjct: 119 TNHPLVVALCNAYGKPLVSTSAN 141
>sp|A6TET6|RIMN_KLEP7 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=rimN PE=3 SV=1
Length = 190
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
V +LK V PT+ ++ + CD S +A+ RL +K K L ++ S + Y
Sbjct: 14 VAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFEQLKPYID 73
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D Q A IF C PGP TF+ A E P+ T ++ + VR+
Sbjct: 74 DSRLSDSQREA-IF----SCWPGPVTFVFPARPETPRWL------TGRFD---SLAVRVT 119
Query: 139 NDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF-VVDGGVRVAE-P 196
N + + + PL+STS A+ + G F VVDG + P
Sbjct: 120 NHPLVIELCEAYGKPLVSTSANLTGQPPCR----TTAEVHAQFGDSFPVVDGATGGRQNP 175
Query: 197 STVVD-MTGTYPKIIRQG 213
S + D +TG ++ RQG
Sbjct: 176 SEIRDALTG---ELFRQG 190
>sp|A0KR66|RIMN_SHESA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain ANA-3) GN=rimN PE=3 SV=1
Length = 188
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
+ +L+ G V PT+ +Y + CD + +AI++L +K K L ++ + Y
Sbjct: 9 IKDLVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYV 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLRKHVGVR 136
+ Q A PGP+TF++ V + C + + + S H GVR
Sbjct: 69 D-----ESQLSAEQLEFAFSKWPGPFTFVMPIKPHVSRYLCGEFDSIAVRVS--AHDGVR 121
Query: 137 IPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTY--GPEG-LDFVVDGGV-R 192
A+CQA + PL+STS + DP + D EG +D +V G +
Sbjct: 122 ----ALCQA----LGKPLVSTSANLAGE-----DPALSGDEILNAFEGKIDALVLGALGE 168
Query: 193 VAEPSTVVDMTGTYPKIIRQGK 214
+PST++D KI+R G+
Sbjct: 169 QRQPSTIIDARSG--KILRNGQ 188
>sp|Q0I0R7|RIMN_SHESR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain MR-7) GN=rimN PE=3 SV=1
Length = 188
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
+ +++ G V PT+ +Y + CD + +AI++L +K K L ++ + Y
Sbjct: 9 IKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYV 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLRKHVGVR 136
+ Q A PGP+TF++ V + C + + + S H GVR
Sbjct: 69 D-----ESQLSAEQLEFAFSKWPGPFTFVMPIKPHVSRYLCGEFDSIAVRVS--AHEGVR 121
Query: 137 IPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTY--GPEG-LDFVVDGGV-R 192
A+CQA + PL+STS + DP + D EG +D +V G +
Sbjct: 122 ----ALCQA----LGKPLVSTSANLAGE-----DPALSGDEILNAFEGKIDALVLGSLGE 168
Query: 193 VAEPSTVVDMTGTYPKIIRQGK 214
+PST++D KI+R G+
Sbjct: 169 QRQPSTIIDARSG--KILRNGQ 188
>sp|Q0HPA1|RIMN_SHESM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella sp. (strain MR-4) GN=rimN PE=3 SV=1
Length = 188
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
+ +++ G V PT+ +Y + CD + +AI++L +K K L ++ + Y
Sbjct: 9 IKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYV 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLRKHVGVR 136
+ Q A PGP+TF++ V + C + + + S H GVR
Sbjct: 69 D-----ESQLSAEQLEFAFSKWPGPFTFVMPIKPHVSRYLCGEFDSIAVRVS--AHEGVR 121
Query: 137 IPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTY--GPEG-LDFVVDGGV-R 192
A+CQA + PL+STS + DP + D EG +D +V G +
Sbjct: 122 ----ALCQA----LGKPLVSTSANLAGE-----DPALSGDEILNAFEGKIDALVLGSLGE 168
Query: 193 VAEPSTVVDMTGTYPKIIRQGK 214
+PST++D KI+R G+
Sbjct: 169 QRQPSTIIDARSG--KILRNGQ 188
>sp|Q8ZLN0|RIMN_SALTY tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=rimN PE=3 SV=1
Length = 190
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
V+LL + V PT+ ++ + CD S +A+ RL +K K L ++ S + Y
Sbjct: 14 VDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYID 73
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D A +AV C PGP TF+ A P+ T ++ + VR+
Sbjct: 74 -----DSILTAAQRKAVFDCWPGPVTFVFPAPATTPRWL------TGRFD---SLAVRVT 119
Query: 139 NDAICQAILQKMDAPLISTSVK 160
N + A+ PL+STS
Sbjct: 120 NHPLVVALCNAYGKPLVSTSAN 141
>sp|A9N8A7|RIMN_SALPB tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
GN=rimN PE=3 SV=1
Length = 190
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
V+LL + V PT+ ++ + CD S +A+ RL +K K L ++ S + Y
Sbjct: 14 VDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYID 73
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D A +AV C PGP TF+ A P+ T ++ + VR+
Sbjct: 74 -----DSILTAAQRKAVFDCWPGPVTFVFPAPATTPRWL------TGRFD---SLAVRVT 119
Query: 139 NDAICQAILQKMDAPLISTSVK 160
N + A+ PL+STS
Sbjct: 120 NHPLVVALCNAYGKPLVSTSAN 141
>sp|Q57J68|RIMN_SALCH tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella choleraesuis (strain SC-B67) GN=rimN PE=3
SV=2
Length = 190
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
V+LL + V PT+ ++ + CD S +A+ RL +K K L ++ S + Y
Sbjct: 14 VDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYID 73
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D A +AV C PGP TF+ A P+ T ++ + VR+
Sbjct: 74 -----DSILTAAQRKAVFDCWPGPVTFVFPAPATTPRWL------TGRFD---SLAVRVT 119
Query: 139 NDAICQAILQKMDAPLISTSVK 160
N + A+ PL+STS
Sbjct: 120 NHPLVVALCNAYGKPLVSTSAN 141
>sp|Q3KKE2|RIMN_PSEPF tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudomonas fluorescens (strain Pf0-1) GN=rimN PE=3
SV=1
Length = 185
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 11 DSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSL 70
+SW+++ ++ GAV PT+ ++ + CD + A++RL IKN K L ++ ++
Sbjct: 3 NSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVADNI 62
Query: 71 RDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLR 130
R D FP+ + + PGP T+++ +P+ T A +
Sbjct: 63 RQFDFLFEDFPQ-------DWIDRMASTWPGPNTWLVPHQNLLPEWVTGVHDTVA-LRVS 114
Query: 131 KHVGVRIPNDAICQAILQKMDAPLISTSVK 160
H VR +C + PLISTS
Sbjct: 115 DHPQVR----DLCSLV-----GPLISTSAN 135
>sp|A9MN84|RIMN_SALAR tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86
/ RSK2980) GN=rimN PE=3 SV=2
Length = 190
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
V+LL + V PT+ ++ + CD S +A+ RL +K K L ++ S + Y
Sbjct: 14 VDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVDKGLILIAASFEQLKPYID 73
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D +AV C PGP TF+ AS P+ T ++ + VR+
Sbjct: 74 -----DSILTTAQRKAVFDCWPGPVTFVFPASATTPRWL------TGRFD---SLAVRVT 119
Query: 139 NDAICQAILQKMDAPLISTSVK 160
+ + A+ PL+STS
Sbjct: 120 DHPLVVALCNAYGKPLVSTSAN 141
>sp|Q3U5F4|YRDC_MOUSE YrdC domain-containing protein, mitochondrial OS=Mus musculus
GN=Yrdc PE=1 SV=1
Length = 280
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 94/225 (41%), Gaps = 39/225 (17%)
Query: 3 VEADPSGADSW--KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
VEA W L V L+ GAV VPTDTLY + C S +A+ + R+K +
Sbjct: 57 VEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEA 116
Query: 61 KPLSILCRSLRDIDTY-TTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVR 119
KPL++ + D+ Y PR ++ PGP T ++ S+E+ K
Sbjct: 117 KPLAVCLGRVADVYRYCQVRVPR----------ELLEDLFPGPVTLVMERSEELNKDLNP 166
Query: 120 YGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYG 179
+ + VG+RIP+ A + Q PL TS L + D +
Sbjct: 167 F---------TRLVGIRIPDHAFMLDLAQMFGGPLALTSAN-LSSQASSLSVEEFQDLW- 215
Query: 180 PEGLDFVVDGG---------VRVAEPSTVVDMT--GTYPKIIRQG 213
L V+DGG R+ STVVD++ G + IIR G
Sbjct: 216 -PHLSLVIDGGPIGDSQSPECRLG--STVVDLSVPGKF-GIIRPG 256
>sp|A1S1K5|RIMN_SHEAM tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
GN=rimN PE=3 SV=2
Length = 187
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 21 LLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF 80
+++ G V PT+ +Y + CD + +AI++L +K K L ++ S + Y
Sbjct: 12 IIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPYIDLS 71
Query: 81 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPND 140
+ Q A + PGP+TF++ A +V +R T + H VR
Sbjct: 72 RVTEAQLQAAFDK-----WPGPFTFVIPAKADV-SPMLRGCFDTIAVRVSAHQDVR---- 121
Query: 141 AICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTV 199
A+C A QK PL+STS + + + T + +D VV G + + +PST+
Sbjct: 122 AMCYA-CQK---PLVSTSANLAGEQPALT--LAEVQTQLGDKIDAVVLGALGQSCQPSTI 175
Query: 200 VDMTGTYPKIIRQG 213
+D+ + I RQG
Sbjct: 176 IDIQTGH--IFRQG 187
>sp|Q8EKQ3|RIMN_SHEON tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella oneidensis (strain MR-1) GN=rimN PE=3 SV=1
Length = 188
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 21/199 (10%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
+ +++ G V PT+ +Y + CD + +AI++L +K K L ++ + Y
Sbjct: 9 IKDVVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLLAYV 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLRKHVGVR 136
D Q + PGP+TF++ V + C + + + S H GVR
Sbjct: 69 DESQLTDEQLELAFSK-----WPGPFTFVMPIKPHVSRYLCGEFDSIAVRVS--AHEGVR 121
Query: 137 IPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAE 195
A+CQA + PL+STS ++ + ++ G +D +V G + +
Sbjct: 122 ----ALCQA----LGKPLVSTSANLAGEDPALSGDEILNVFEGK--IDALVLGQLGEQRQ 171
Query: 196 PSTVVDMTGTYPKIIRQGK 214
PST++D KI+R G+
Sbjct: 172 PSTIIDARSG--KILRNGQ 188
>sp|Q3IDH7|RIMN_PSEHT tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rimN PE=3 SV=1
Length = 187
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 26/201 (12%)
Query: 10 ADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRS 69
+D + + L +G V + PT+ +Y + CD + A+ERL IK K L ++ +
Sbjct: 2 SDQSTIAAAITCLAQGEVILYPTEAVYGLGCDPDNQQAVERLLAIKQRPVEKGLILIADN 61
Query: 70 LRDIDTYT--TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKY 127
+ Y P A+IF + P T+++ A+K PK T +Y
Sbjct: 62 YGQLLKYVDDAKIPMDK---RADIFSS----WPNAITWVMPAAKNTPKWL------TGQY 108
Query: 128 SLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVV 187
+ VR+ N + + Q+ PL+STS N V + A + E + + V
Sbjct: 109 D---TIAVRVTNHPTVKRLCQEFGKPLVSTSANLSGQN--TVLSIAEAKSQFTEQIGYYV 163
Query: 188 D---GGVRVAEPSTVVD-MTG 204
D GG +PST+ D M G
Sbjct: 164 DEPLGG--NTQPSTIKDAMNG 182
>sp|Q8P4F2|RIMN_XANCP tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=rimN PE=3 SV=1
Length = 187
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 15 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
L+ V L G V PT+ ++ + CD + A+ RL IK K + ++ L +
Sbjct: 7 LDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQ 66
Query: 75 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
+ G Q AV PGP+T+IL + + P ++ H G
Sbjct: 67 DWIDIAALGSEQ-----LTAVLAQWPGPHTWILPVTAQAP-----------RWVTGDHDG 110
Query: 135 --VRIPNDAICQAILQKMDAPLISTSVKWLKD----NEWMVDPVVIADTYGPEGLDFVVD 188
VRI + A+ + APL+STS + + +DP ++A +D V+D
Sbjct: 111 LAVRISAHPVVAALCKAWGAPLVSTSANLAGEPPARSRAALDPALLAR------IDGVLD 164
Query: 189 GGV-RVAEPSTVVD 201
G V +A+P+ + D
Sbjct: 165 GEVGGLAQPTPIRD 178
>sp|B0RWR5|RIMN_XANCB tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xanthomonas campestris pv. campestris (strain B100)
GN=rimN PE=3 SV=2
Length = 187
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 15 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
L+ V L G V PT+ ++ + CD + A+ RL IK K + ++ L +
Sbjct: 7 LDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQ 66
Query: 75 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
+ G Q AV PGP+T+IL + + P ++ H G
Sbjct: 67 DWIDIAALGSEQ-----LTAVLAQWPGPHTWILPVTAQAP-----------RWVTGDHDG 110
Query: 135 --VRIPNDAICQAILQKMDAPLISTSVKWLKD----NEWMVDPVVIADTYGPEGLDFVVD 188
VRI + A+ + APL+STS + + +DP ++A +D V+D
Sbjct: 111 LAVRISAHPVVAALCKAWGAPLVSTSANLAGEPPARSRAALDPALLAR------IDGVLD 164
Query: 189 GGV-RVAEPSTVVD 201
G V +A+P+ + D
Sbjct: 165 GEVGGLAQPTPIRD 178
>sp|Q4UQ07|RIMN_XANC8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Xanthomonas campestris pv. campestris (strain 8004)
GN=rimN PE=3 SV=1
Length = 187
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 15 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
L+ V L G V PT+ ++ + CD + A+ RL IK K + ++ L +
Sbjct: 7 LDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQ 66
Query: 75 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
+ G Q AV PGP+T+IL + + P ++ H G
Sbjct: 67 DWIDIAALGSEQ-----LTAVLAQWPGPHTWILPVTAQAP-----------RWVTGDHDG 110
Query: 135 --VRIPNDAICQAILQKMDAPLISTSVKWLKD----NEWMVDPVVIADTYGPEGLDFVVD 188
VRI + A+ + APL+STS + + +DP ++A +D V+D
Sbjct: 111 LAVRISAHPVVAALCKAWGAPLVSTSANLAGEPPARSRAALDPALLAR------IDGVLD 164
Query: 189 GGV-RVAEPSTVVD 201
G V +A+P+ + D
Sbjct: 165 GEVGGLAQPTPIRD 178
>sp|Q08A23|RIMN_SHEFN tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella frigidimarina (strain NCIMB 400) GN=rimN
PE=3 SV=1
Length = 188
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 14 KLEP--VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 71
+L+P V +++G V PT+ ++ + CD + SAIE+L +K K L ++ S
Sbjct: 3 QLQPSAVATTIQQGGVIAYPTEAVFGLGCDPDNDSAIEKLLVVKQRPWQKGLILVASSFE 62
Query: 72 DIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPK-KCVRYGTTTAKYSLR 130
+ Y + Q + + PGP+TF++ V K C + +
Sbjct: 63 QLLPYLDITQLTEQQ-----LQFAQSKWPGPFTFVMPIQSHVSKLLCGEFDS-------- 109
Query: 131 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 190
+ VR+ + + + ++ PL+STS L + +VD I + + +D ++ G
Sbjct: 110 --IAVRVSAHPVVRELCDTLNKPLVSTSAN-LAGEQPVVDAQHIITDFS-DKIDALILGK 165
Query: 191 V-RVAEPSTVVDMTGTYPKIIRQG 213
+ +PST++D +I+R G
Sbjct: 166 LGEQRQPSTIIDARSG--QILRNG 187
>sp|A1WZH9|RIMN_HALHL tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Halorhodospira halophila (strain DSM 244 / SL1)
GN=rimN PE=3 SV=1
Length = 191
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 16/154 (10%)
Query: 7 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
P G +++ L++G V PT+ ++ + CD ++ A+ RL +K + L ++
Sbjct: 5 PPGTRPFRVRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILI 64
Query: 67 CRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAK 126
R + Y P A ++ PGP T++L AS P + V G
Sbjct: 65 AAESRQLARYLAPLP-------AEWAETIQASWPGPMTWVLPASTRAP-RWVSGG----- 111
Query: 127 YSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK 160
R + VR+ + A+ L+STS
Sbjct: 112 ---RDTLAVRVTAHPVAAALCSAFGGALVSTSAN 142
>sp|Q12TA0|RIMN_SHEDO tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=rimN PE=3 SV=1
Length = 188
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 25/201 (12%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
V ++ +G V PT+ +Y + CD + AIE+L +K K L ++ S + Y
Sbjct: 9 VTPVIAQGGVIAYPTEAVYGLGCDPDNDQAIEKLLAVKQRPWQKGLILVASSFEQLLPYV 68
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKH---VG 134
Q PGP+TF++ V K LR +
Sbjct: 69 DVAQLTQAQ-----LDFAHSKWPGPFTFVMPVKSHVSNK------------LRGEFDSIA 111
Query: 135 VRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RV 193
VR+ I + + ++ PL+STS + + ++ D + +D +V G + +
Sbjct: 112 VRVSAHPIVRELCDSLNKPLVSTSANLAGQDPVLTSRQILTDF--ADKIDALVLGDLGQQ 169
Query: 194 AEPSTVVDMTGTYPKIIRQGK 214
A+PST++D ++R G+
Sbjct: 170 AQPSTIIDARSGL--VLRNGQ 188
>sp|A8AQH7|RIMN_CITK8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
/ SGSC4696) GN=rimN PE=3 SV=2
Length = 190
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 28/200 (14%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
V +L + V PT+ ++ + CD S +A+ RL +K K L ++ + + Y
Sbjct: 14 VAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLILIAANFEQLKPYID 73
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D Q A+ C PGP TF+ A P+ T ++ + VR+
Sbjct: 74 DSMLTDTQRE-----AIFACWPGPVTFVFPAPATTPRW------LTGRFD---SLAVRVT 119
Query: 139 NDAICQAILQKMDAPLISTSVKWLKDNEWMVDPV-VIADTYGPEGLDF-VVDG--GVRVA 194
+ + ++ Q PL+STS N + P + + G DF VV+G G R+
Sbjct: 120 DHPLVVSLCQAYGKPLVSTSA-----NLTGLPPCRTVEEVRAQFGADFPVVEGETGGRL- 173
Query: 195 EPSTVVD-MTGTYPKIIRQG 213
PS + D +TG ++ RQG
Sbjct: 174 NPSEIRDALTG---ELFRQG 190
>sp|A7MPF3|RIMN_CROS8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=rimN
PE=3 SV=1
Length = 190
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 18 VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
+V++LK+ V PT+ ++ + CD S +A++RL +K K L ++ + + Y
Sbjct: 13 IVDVLKKEQVIAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANFDQLKPYI 72
Query: 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRI 137
D A AV PGP TF+ A P+ T ++ + VR+
Sbjct: 73 D-----DAALTAEQREAVFARWPGPVTFVFPAKPSTPR------WLTGRFD---SLAVRV 118
Query: 138 PNDAICQAILQKMDAPLISTSVK 160
N A+ + PL+STS
Sbjct: 119 TNHPQVIALCEAFGKPLVSTSAN 141
>sp|Q0T019|RIMN_SHIF8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shigella flexneri serotype 5b (strain 8401) GN=rimN
PE=3 SV=2
Length = 190
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
+++L E V PT+ ++ + CD S +A+ RL +K K L ++ + + Y
Sbjct: 14 IDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYID 73
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D Q IF C PGP TF+ A P+ T ++ + VR+
Sbjct: 74 DTMLTDVQ-RETIF----SCWPGPVTFVFPAPATTPRWL------TGRFD---SLAVRVT 119
Query: 139 NDAICQAILQKMDAPLISTSVK 160
+ + A+ Q PL+STS
Sbjct: 120 DHPLVVALCQAYGKPLVSTSAN 141
>sp|Q3SG43|RIMN_THIDA tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=rimN PE=3 SV=1
Length = 188
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 34/197 (17%)
Query: 22 LKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFP 81
L+ G V PT++ Y + CD ++ +A+ RL R+K + K + ++ R + +
Sbjct: 18 LRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGMLLIADRYRRLQPFVGAL- 76
Query: 82 RGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDA 141
G A + R+ PGP T+++ AS+ P + G TT V VR+
Sbjct: 77 --SPTGRARMRRS----WPGPVTWVVPASRRCPPELT-GGRTT--------VAVRVTAHR 121
Query: 142 ICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIA----DTYGPEGLDFVVDG--GVRVAE 195
A+ + + L+STS N+ P A +G VVDG G R
Sbjct: 122 PAAALCRSLGTALVSTSA-----NKSGHTPAKTAAQCRRMFGAR--VRVVDGRIGTR-RR 173
Query: 196 PSTVVDM-TGTYPKIIR 211
PST++D+ TG KI+R
Sbjct: 174 PSTLIDLATG---KILR 187
>sp|Q83JD1|RIMN_SHIFL tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Shigella flexneri GN=rimN PE=3 SV=4
Length = 190
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 19 VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
+++L E V PT+ ++ + CD S +A+ RL +K K L ++ + + Y
Sbjct: 14 IDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYID 73
Query: 79 GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
D Q IF C PGP TF+ A P+ T ++ + VR+
Sbjct: 74 DTMLTDVQ-RETIF----SCWPGPVTFVFPAPATTPRWL------TGRFD---SLAVRVT 119
Query: 139 NDAICQAILQKMDAPLISTSVK 160
+ + A+ Q PL+STS
Sbjct: 120 DHPLVVALCQAYGKPLVSTSAN 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,662,784
Number of Sequences: 539616
Number of extensions: 4242498
Number of successful extensions: 9319
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 9015
Number of HSP's gapped (non-prelim): 178
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)