Query 026381
Match_columns 239
No_of_seqs 136 out of 1078
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11630 hypothetical protein; 100.0 1E-58 2.2E-63 395.8 23.5 203 2-221 4-206 (206)
2 COG0009 SUA5 Putative translat 100.0 1.2E-58 2.6E-63 394.9 21.7 207 1-225 2-209 (211)
3 TIGR00057 Sua5/YciO/YrdC/YwlC 100.0 3.4E-56 7.3E-61 379.1 20.7 196 5-220 1-197 (201)
4 PRK10634 tRNA(ANN) t(6)A37 thr 100.0 1.3E-53 2.9E-58 360.2 21.4 187 8-213 3-190 (190)
5 PF01300 Sua5_yciO_yrdC: Telom 100.0 1.2E-52 2.6E-57 351.1 17.4 177 20-213 1-179 (179)
6 TIGR00143 hypF [NiFe] hydrogen 100.0 2.2E-39 4.9E-44 318.5 24.0 191 12-224 162-356 (711)
7 KOG3051 RNA binding/translatio 100.0 8E-31 1.7E-35 224.2 11.3 191 13-221 16-210 (261)
8 COG0068 HypF Hydrogenase matur 99.9 2.9E-22 6.2E-27 192.6 19.9 190 13-224 198-392 (750)
9 COG2192 Predicted carbamoyl tr 95.9 0.13 2.8E-06 49.9 12.2 150 14-190 379-548 (555)
10 KOG3051 RNA binding/translatio 94.9 0.022 4.7E-07 49.9 3.1 203 12-237 37-259 (261)
11 cd07985 LPLAT_GPAT Lysophospho 77.1 7.8 0.00017 34.0 6.3 59 10-68 99-169 (235)
12 cd00354 FBPase Fructose-1,6-bi 58.4 9.8 0.00021 34.7 3.1 61 15-77 233-312 (315)
13 PLN02262 fructose-1,6-bisphosp 53.9 9.4 0.0002 35.3 2.2 62 15-78 252-332 (340)
14 PRK09293 fructose-1,6-bisphosp 51.6 10 0.00023 34.8 2.1 63 14-78 240-321 (327)
15 PF02543 CmcH_NodU: Carbamoylt 49.8 49 0.0011 30.7 6.3 64 14-78 253-325 (360)
16 PLN02542 fructose-1,6-bisphosp 49.3 9.7 0.00021 36.1 1.6 61 15-77 329-408 (412)
17 TIGR01769 GGGP geranylgeranylg 42.9 51 0.0011 28.2 4.9 69 2-78 2-71 (205)
18 PF00316 FBPase: Fructose-1-6- 40.9 19 0.00041 33.1 2.1 59 14-77 239-319 (324)
19 TIGR01768 GGGP-family geranylg 36.3 88 0.0019 27.2 5.4 70 2-78 3-73 (223)
20 PLN02349 glycerol-3-phosphate 34.0 50 0.0011 31.3 3.7 44 13-58 281-335 (426)
21 COG2022 ThiG Uncharacterized e 30.9 1.4E+02 0.0031 26.4 5.7 60 132-191 132-191 (262)
22 PLN02781 Probable caffeoyl-CoA 30.0 1.1E+02 0.0024 26.3 5.0 41 3-43 148-189 (234)
23 TIGR00091 tRNA (guanine-N(7)-) 29.4 86 0.0019 25.9 4.1 24 12-35 112-135 (194)
24 COG1831 Predicted metal-depend 29.3 1.4E+02 0.003 26.9 5.5 74 3-78 12-94 (285)
25 PRK10148 hypothetical protein; 28.9 1E+02 0.0022 24.5 4.4 39 2-42 88-131 (147)
26 COG0379 NadA Quinolinate synth 28.5 1E+02 0.0022 28.3 4.6 88 14-109 80-167 (324)
27 PF14258 DUF4350: Domain of un 27.8 1.3E+02 0.0027 20.4 4.1 29 2-30 38-68 (70)
28 cd08205 RuBisCO_IV_RLP Ribulos 26.8 59 0.0013 30.2 2.9 46 142-191 120-168 (367)
29 PRK09375 quinolinate synthetas 26.7 1.2E+02 0.0026 27.8 4.8 88 13-108 77-164 (319)
30 PF00926 DHBP_synthase: 3,4-di 26.5 1.9E+02 0.004 24.6 5.7 57 15-76 1-63 (194)
31 PRK00014 ribB 3,4-dihydroxy-2- 26.3 2.1E+02 0.0046 25.0 6.0 59 13-76 19-83 (230)
32 COG0144 Sun tRNA and rRNA cyto 25.7 48 0.001 30.6 2.1 22 11-32 267-288 (355)
33 PF09843 DUF2070: Predicted me 25.2 1.2E+02 0.0026 25.0 4.3 41 1-41 76-118 (179)
34 cd01469 vWA_integrins_alpha_su 24.9 2.5E+02 0.0054 22.6 6.1 11 27-37 106-116 (177)
35 PF09837 DUF2064: Uncharacteri 24.5 99 0.0021 24.0 3.4 36 6-41 67-105 (122)
36 TIGR00550 nadA quinolinate syn 24.1 3.6E+02 0.0078 24.5 7.4 80 13-100 62-141 (310)
37 TIGR00631 uvrb excinuclease AB 24.0 2.4E+02 0.0052 28.4 6.8 87 6-116 9-108 (655)
38 cd06557 KPHMT-like Ketopantoat 23.5 5.1E+02 0.011 22.8 11.4 39 11-58 89-127 (254)
39 TIGR00506 ribB 3,4-dihydroxy-2 23.4 2.1E+02 0.0046 24.4 5.5 58 14-76 4-67 (199)
40 COG0158 Fbp Fructose-1,6-bisph 23.2 57 0.0012 29.9 2.0 63 14-78 239-320 (326)
41 COG4506 Uncharacterized protei 22.6 69 0.0015 25.8 2.1 19 198-216 56-74 (143)
42 TIGR00446 nop2p NOL1/NOP2/sun 22.0 66 0.0014 28.1 2.2 24 11-34 178-201 (264)
43 PRK05773 3,4-dihydroxy-2-butan 21.7 2.3E+02 0.005 24.6 5.4 58 14-76 2-65 (219)
44 PLN02476 O-methyltransferase 21.1 1.5E+02 0.0032 26.6 4.2 41 2-43 197-239 (278)
45 cd04741 DHOD_1A_like Dihydroor 20.7 2.5E+02 0.0054 25.0 5.7 69 2-72 161-254 (294)
46 cd07988 LPLAT_ABO13168-like Ly 20.6 1.3E+02 0.0028 24.3 3.5 34 3-37 72-108 (163)
47 PF05785 CNF1: Rho-activating 20.6 44 0.00096 30.1 0.8 32 126-163 102-133 (281)
48 PLN02589 caffeoyl-CoA O-methyl 20.5 1.3E+02 0.0028 26.4 3.7 42 2-43 159-201 (247)
49 PLN02628 fructose-1,6-bisphosp 20.5 91 0.002 29.0 2.8 62 15-78 263-337 (351)
No 1
>PRK11630 hypothetical protein; Provisional
Probab=100.00 E-value=1e-58 Score=395.84 Aligned_cols=203 Identities=32% Similarity=0.612 Sum_probs=185.7
Q ss_pred eEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCC
Q 026381 2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFP 81 (239)
Q Consensus 2 ~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p 81 (239)
++++++++++.+.+++|+++|++||+|+|||||+|||+|++.|++||+|||++|+|+.+|||+++++|++++.+|+. .+
T Consensus 4 ~~~~~~~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~lK~R~~~Kpl~ll~~~~~~~~~~~~-~~ 82 (206)
T PRK11630 4 FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF-VD 82 (206)
T ss_pred eEecCCCCCCHHHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHHHcCCCCCCCeEEEECCHHHHHHHhc-CC
Confidence 78899999999899999999999999999999999999999999999999999999999999999999999999996 43
Q ss_pred CCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCC
Q 026381 82 RGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKW 161 (239)
Q Consensus 82 ~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~ 161 (239)
+.+++++++|||||+|+|+++++.+|..+. .++.++||||+|+|+++++|++++|.||++||||+
T Consensus 83 -------~~~~~l~~~~wPGplT~Il~a~~~~p~~~~--------~~~~~tigiRip~~~~~~~L~~~~g~PL~~TSAN~ 147 (206)
T PRK11630 83 -------NVAFRLMKNNTPGNYTFILKGTKEVPRRLL--------QEKRKTIGLRVPSNPIALALLEALGEPMLSTSLML 147 (206)
T ss_pred -------HHHHHHHHhcCCCCeEEEEECCCCCCHHHc--------CCCCCeEEEECCCCHHHHHHHHHhCCcEEECCcCc
Confidence 257899999999999999999999997332 24678999999999999999999999999999999
Q ss_pred CCCCCCCCCHhHHHHHcCCCcccEEEeCCCCCCCCceEEEEECCCcEEEecCCCCCccce
Q 026381 162 LKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM 221 (239)
Q Consensus 162 sg~~~~~~~~~~~~~~~~~~~vd~ild~g~~~~~~STIVdl~~~~~~ilR~G~~~~~~~~ 221 (239)
||++++..+.+++.+.|++ .+|+|+|+|...+.||||||+++++++|+|+|+++.++|+
T Consensus 148 sG~~~~~~~~~~i~~~~~~-~vd~ildg~~~~~~pSTIvd~~~~~~~ilR~G~~~~~~~~ 206 (206)
T PRK11630 148 PGSDFTESDPEEIKDRLEK-QVDLIIHGGYLGQQPTTVIDLTDDTPVVVREGVGDVKPFL 206 (206)
T ss_pred CCCCCCCCCHHHHHHHhcC-CceEEEeCCCCCCCCCEEEEccCCceEEEecCCCchhhcC
Confidence 9976445788999998885 8999999998767999999999999999999999987764
No 2
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-58 Score=394.95 Aligned_cols=207 Identities=31% Similarity=0.490 Sum_probs=190.5
Q ss_pred CeEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccC
Q 026381 1 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF 80 (239)
Q Consensus 1 ~~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~ 80 (239)
.++.+++++++.+.+++|+++|++||+|+|||||+|||+|++.|++||+|||++|+|+.+|||+++|+|++++..|+. +
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~~~~~-~ 80 (211)
T COG0009 2 QIFMIHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLILHVASLEQLKEYAD-V 80 (211)
T ss_pred ceeecCccccchHHHHHHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhc-C
Confidence 378899999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccC
Q 026381 81 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK 160 (239)
Q Consensus 81 p~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN 160 (239)
+ +.+++++++|||||+|||+++++..|.+++ +.+.+|||||||+|+++++||+++|.||++||||
T Consensus 81 ~-------~~~~~l~~~fwPGPlT~Il~~~~~~~~~~~--------~~~~~TiavRvP~hpi~~~Li~~~G~Pl~stSAN 145 (211)
T COG0009 81 P-------DVARKLLKAFWPGPLTFILPATKEVPRRLV--------TAGLSTIAVRVPDHPIALALIEALGEPLASTSAN 145 (211)
T ss_pred C-------HHHHHHHHHhCCCCeEEEEeCCCCCChhhh--------cCCCCeEEEECCCCHHHHHHHHHhCCceEEcCcC
Confidence 4 368999999999999999999999997654 3566789999999999999999999999999999
Q ss_pred CCCCCCCCCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381 161 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED 225 (239)
Q Consensus 161 ~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~ 225 (239)
+||++ ++.+.+++.+.|++ ++|+|+|+|. ..+.+|||||++++.++|+|+|.+..+++.++..
T Consensus 146 lsG~p-s~tt~~ev~~~~~~-~v~~iidgg~~~~g~pSTIiDlt~~~~~ilR~G~i~~~~i~~~~~ 209 (211)
T COG0009 146 LSGQP-SPTTAEEVRADFGG-QVDLIIDGGPCRGGLPSTIIDLTDDPPRILRPGAISLEEIEKLLG 209 (211)
T ss_pred cCCCC-CCCCHHHHHHHhcc-cCeEEEeCCccCCCCCceEEECCCCCcEEEeCCCCCHHHHHHHhc
Confidence 99886 68999999999985 8999999987 4799999999999999999999999877665543
No 3
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=100.00 E-value=3.4e-56 Score=379.09 Aligned_cols=196 Identities=32% Similarity=0.594 Sum_probs=180.9
Q ss_pred eCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCC
Q 026381 5 ADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGD 84 (239)
Q Consensus 5 ~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~ 84 (239)
+|+++++.+.+++++++|++||+|++||||+|||+|++.|++|++|||++|+|+.+|||++||+|++++.+|+. ++
T Consensus 1 ~~~~~~~~~~i~~a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~~iK~R~~~Kpl~~l~~~~~~l~~~~~-~~--- 76 (201)
T TIGR00057 1 IHPENPSQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDLSEIEKYAY-VP--- 76 (201)
T ss_pred CCcCCCCHHHHHHHHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHHHHhCCCCCCCeEEEECCHHHHHHHhc-CC---
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999996 54
Q ss_pred CCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCC
Q 026381 85 GQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKD 164 (239)
Q Consensus 85 ~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~ 164 (239)
+..++++++|||||+|+|+++++.+|+.+. ++.++||||||+|+++++|++.+|.||++||||+||+
T Consensus 77 ----~~~~~l~~~~~Pgp~T~Il~~~~~~~~~l~---------~~~~tigiRvP~~~~~~~L~~~~g~PL~~TSAN~sG~ 143 (201)
T TIGR00057 77 ----DDAKRLMKKFWPGPLTLVLKKTPEIPRRVS---------GKRKTIGIRVPDNPIALELLEELGKPIVATSANLSGK 143 (201)
T ss_pred ----HHHHHHHHhcCCCCeEEEEECCCCCCHhHc---------CCCCeEEEECCCCHHHHHHHHHhCCCEEECCCCCCCC
Confidence 257899999999999999999999998752 4668999999999999999999999999999999988
Q ss_pred CCCCCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccc
Q 026381 165 NEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYW 220 (239)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~ 220 (239)
+ ++.+.+++.+.|++ .+|+|+|+|. ..+.+|||||++++.++|+|+|+++ +++
T Consensus 144 ~-~~~~~~~i~~~~~~-~vd~ild~g~~~~~~~STVid~~~~~~~ilR~G~~~-~~i 197 (201)
T TIGR00057 144 P-SATDVEEAVDELGK-LVDLIIDAGPCLGGEPSTIIDLTDDTPKVLREGVGS-EPI 197 (201)
T ss_pred C-CCCCHHHHHHHhCC-CccEEEcCCCCCCCCCCcEEEccCCceEEEecCCCH-HHH
Confidence 6 57889999999985 8999999995 6789999999999999999999998 554
No 4
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=100.00 E-value=1.3e-53 Score=360.18 Aligned_cols=187 Identities=23% Similarity=0.356 Sum_probs=167.4
Q ss_pred CCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCC
Q 026381 8 SGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQG 87 (239)
Q Consensus 8 ~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~ 87 (239)
+.++.+.+++++++|++||||+|||||+|||+|++.|++||+|||++|+|+.+|||++|++|++++.+|+.... +
T Consensus 3 ~~~~~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~~~~-----~ 77 (190)
T PRK10634 3 NNLQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDSM-----L 77 (190)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHHHHHHhcC-----C
Confidence 34677899999999999999999999999999999999999999999999999999999999999999987321 0
Q ss_pred chHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCC
Q 026381 88 HANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEW 167 (239)
Q Consensus 88 ~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~ 167 (239)
.+.+++++++|||||+|||+++++.+|+++. ++.++||||||+|+++++|++++|.||++||||+||++ +
T Consensus 78 ~~~~~~l~~~~wPGPlTlil~~~~~~p~~l~---------~~~~tigvRiP~~~~~~~ll~~~g~Pl~~TSAN~sG~~-~ 147 (190)
T PRK10634 78 TDAQRETIFSCWPGPVTFVFPAPATTPRWLT---------GRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLP-P 147 (190)
T ss_pred CHHHHHHHHHhCCCCEEEEEECCCCCCHHHc---------CCCCeEEEECCCCHHHHHHHHHhCCcEEECCcccCCCC-C
Confidence 1356789999999999999999999999863 46789999999999999999999999999999999885 5
Q ss_pred CCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecC
Q 026381 168 MVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQG 213 (239)
Q Consensus 168 ~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G 213 (239)
+.+.+++.+.|++ ++| ++|+|. ..+.||||||++++ +|+|+|
T Consensus 148 ~~~~~~i~~~~~~-~v~-i~dg~~~~~~~pSTIvd~~~~--~ilR~G 190 (190)
T PRK10634 148 CRTVEEVRAQFGA-AFP-VVPGETGGRLNPSEIRDALTG--ELFRQG 190 (190)
T ss_pred CCCHHHHHHHhCC-CcE-EEcCCCCCCCCCCeEEECCCC--eEEeCC
Confidence 7889999999885 788 589886 45799999999854 899998
No 5
>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []. The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....
Probab=100.00 E-value=1.2e-52 Score=351.14 Aligned_cols=177 Identities=40% Similarity=0.655 Sum_probs=153.7
Q ss_pred HHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHHHHHHHhcC
Q 026381 20 ELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCL 99 (239)
Q Consensus 20 ~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~~~l~~~~w 99 (239)
|+|++||+|++||||+|||+|+++|++|++|||++|+|+.+|||+++++|++|+.+|+. .+ .++.+++++++||
T Consensus 1 e~Lk~G~vvi~PTdT~ygl~~~~~n~~av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~-~~-----~~~~~~~l~~~~w 74 (179)
T PF01300_consen 1 EILKAGGVVIYPTDTVYGLGCDAFNPEAVERIYKIKQRPKNKPLILLVSSIEQLEEYVD-SP-----VSPKARRLLEKFW 74 (179)
T ss_dssp -HHHTT-EEEEEESSSEEEEEETTSHHHHHHHHHHHTSSTTS--EEEESSHHHHHHHEE-TT-------HHHHHHHHHCH
T ss_pred CccccCCEEEEECCCEEEEEEecCCHHHHHHHHHhhcccCCCCEEEEECCHHHHHHHhh-cc-----ccHHHHHHHHhcc
Confidence 57999999999999999999999999999999999999999999999999999999997 11 1357899999999
Q ss_pred CCCeEEEeccCCC-CChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCCCHhHHHHHc
Q 026381 100 PGPYTFILTASKE-VPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTY 178 (239)
Q Consensus 100 PGplTlIl~~~~~-lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~~~~~~~~~~ 178 (239)
|||+|+|+++++. +|+++. ++.++||||+|+|+++++|++++|.||++||||+||++ ++.+.+++.+.|
T Consensus 75 Pgp~t~I~~~~~~~l~~~~~---------~~~~ti~vRip~~~~~~~l~~~~g~Pl~~TSAN~sg~~-~~~~~~~i~~~~ 144 (179)
T PF01300_consen 75 PGPLTLILPAKKENLPKYLT---------SKRGTIGVRIPDHPILRELLEALGGPLISTSANLSGEP-PATDFEEIIERF 144 (179)
T ss_dssp SSSEEEEEEEGTTCSHHHHH---------TTTSEEEEECHCSHHHHHHHHHHTS-EEEEESSSTTSS-CTTSHHHHHHHH
T ss_pred ccCeeEeeccccccCChhhc---------CCCCeEEEEecChHHHHHHHHhcCCceEecccccccCC-CCCCHHHHHHHh
Confidence 9999999999654 888863 57899999999999999999999999999999999985 578999999999
Q ss_pred CCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecC
Q 026381 179 GPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQG 213 (239)
Q Consensus 179 ~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G 213 (239)
.+ .+|+|+|+|. ..+.+|||||+++++++|+|+|
T Consensus 145 ~~-~vd~iv~~~~~~~~~~STIvd~~~~~~~ilR~G 179 (179)
T PF01300_consen 145 GD-KVDLIVDGGEIPSGQPSTIVDLTNGKPKILREG 179 (179)
T ss_dssp TT-TSSEEEECCHHSSSS--EEEETTSSSSEEEE--
T ss_pred cc-CceEEEECCCCCCCCCCeEEEeeCCceEEEeeC
Confidence 85 8999999996 5789999999999999999998
No 6
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=100.00 E-value=2.2e-39 Score=318.46 Aligned_cols=191 Identities=18% Similarity=0.199 Sum_probs=169.5
Q ss_pred hhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHH
Q 026381 12 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI 91 (239)
Q Consensus 12 ~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~ 91 (239)
.+.+++|++.|++||+|++||||+|||+|+++|++||+|||++|+|+ +|||+||++|++++.+|+. ++. ..
T Consensus 162 ~~~i~~aa~~L~~G~IVaipt~ggy~L~cda~n~~AV~rLr~~K~Rp-~KPlavmv~d~~~~~~~~~-~~~-------~e 232 (711)
T TIGR00143 162 DDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRP-LKPFAVMSPDLESAEQHAE-LNN-------LE 232 (711)
T ss_pred hHHHHHHHHHHhCCCEEEEEcCCcceeecCCCCHHHHHHHHHHhCCC-CCCEEEEECCHHHHHHHhc-CCH-------HH
Confidence 56899999999999999999999999999999999999999999997 7999999999999999997 432 35
Q ss_pred HHHHHhcCCCCeEEEeccCC--CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCC
Q 026381 92 FRAVKHCLPGPYTFILTASK--EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV 169 (239)
Q Consensus 92 ~~l~~~~wPGplTlIl~~~~--~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~ 169 (239)
++++ ..||||+++ +++++ .+|+.+ .++.++||||+|+||+++.|++.+|.||++||||+||++ ++.
T Consensus 233 ~~lL-~~~~~Pivl-l~~~~~~~l~~~v---------~~~~~tiGvrlP~~pl~~~Ll~~~g~PLv~TSAN~SGep-~~~ 300 (711)
T TIGR00143 233 CELL-TSPAAPIVL-LRKKPDIKLAPNI---------APNLPTIGVMLPYTPLHHLLLQLLAFPLVMTSANLPGLP-MAI 300 (711)
T ss_pred HHHH-HcCCCCEEE-EECCCCCCCChhh---------cCCCCEEEEEcCCCHHHHHHHHHcCCcEEECccCCCCCC-CCC
Confidence 6677 458999865 77765 467664 256789999999999999999999999999999999875 678
Q ss_pred CHhHHHHHcCCCcccEEEeCCC--CCCCCceEEEEECCCcEEEecCCCCCccceecc
Q 026381 170 DPVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEE 224 (239)
Q Consensus 170 ~~~~~~~~~~~~~vd~ild~g~--~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~ 224 (239)
+.+++.+.+.. .+|++++++. ..+.+||||++++++++|||+|+|+.|.++.+.
T Consensus 301 ~~~e~~~~l~~-~~D~~L~~~r~i~~~~dsSVV~~~~~~~~ilR~~RG~aP~~~~l~ 356 (711)
T TIGR00143 301 DNAEILDKLQG-IADGFLVHNRRIVNRVDDSVVQHVAGEILFLRRSRGFAPQPLTLP 356 (711)
T ss_pred CHHHHHHHhcC-CccEEEeCCCCcCCCCCCceEEEECCeeEEEeccCCCCCcccccC
Confidence 89999888885 8999988776 468999999999999999999999999999997
No 7
>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8e-31 Score=224.24 Aligned_cols=191 Identities=24% Similarity=0.298 Sum_probs=158.9
Q ss_pred hhHHHHHHHHH-CCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhcc-CCCCCCCCchH
Q 026381 13 WKLEPVVELLK-EGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG-FPRGDGQGHAN 90 (239)
Q Consensus 13 ~~l~~a~~~L~-~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~-~p~~~~~~~~~ 90 (239)
+.+..++...+ .++.+++||||+||++++..+..|+.+||++|+|+.++|+++.++++.+++..... ++ +.
T Consensus 16 ~~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~~i~-------~~ 88 (261)
T KOG3051|consen 16 PALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAINIP-------SL 88 (261)
T ss_pred hhhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhhcch-------hh
Confidence 34444555555 69999999999999999999999999999999999999999999999999998764 33 34
Q ss_pred HHHHHHhcCCCCeEEEeccCCC-CChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCC
Q 026381 91 IFRAVKHCLPGPYTFILTASKE-VPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV 169 (239)
Q Consensus 91 ~~~l~~~~wPGplTlIl~~~~~-lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~ 169 (239)
.+.|++.+||||+|++++..+. +++.+ +.+..++|+|+|+|+++++||.++|.|++.||||.|+.+.+-.
T Consensus 89 ~~~L~~~l~PGPltlll~~~~~~l~~~~---------~~~~~svAvRiP~~~~a~~li~~~~~Pla~tSAN~Ssr~s~tl 159 (261)
T KOG3051|consen 89 YLPLASYLWPGPLTLLLERADECLSKLT---------NPGLPSVAVRIPDHPVASALIPKLGVPLALTSANASSRPSPTL 159 (261)
T ss_pred hhHHHhhcCCCceEEEeecchhhccccc---------cCCCcceeEEccCCHHHHHHHHHhCCCccccccccccCCCCcc
Confidence 6789999999999999999884 66653 3456779999999999999999999999999999998864334
Q ss_pred CHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccce
Q 026381 170 DPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWM 221 (239)
Q Consensus 170 ~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~~ 221 (239)
.....++... ++++|+|||. ..++.||+++...+.+.|+|.|.+.-++++
T Consensus 160 ai~~~~Dl~~--~i~lilDgG~c~~g~~~~~~~g~~~p~~i~~pgG~~~~~~v 210 (261)
T KOG3051|consen 160 AIHVFADLQP--KIPLILDGGACGSGVESTVVEGSTDPVDILRPGGITGEDIV 210 (261)
T ss_pred hhhhhhhhcc--chhheecCcccccCcCceeeccccCcceeeccCCccceeEE
Confidence 4444444444 7999999997 689999999998888899999976654443
No 8
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.9e-22 Score=192.60 Aligned_cols=190 Identities=18% Similarity=0.260 Sum_probs=158.2
Q ss_pred hhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHHH
Q 026381 13 WKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIF 92 (239)
Q Consensus 13 ~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~~ 92 (239)
.++.++++.|+.|+++++..-.+|+|+|++.|.++|++|++.|+|| .|||++|+.|++.++.|+. +. +..+
T Consensus 198 ~ai~~a~klL~~G~IvAIKGiGGFhLaCda~~~eaV~~LR~rk~Rp-~KPFAvM~kdl~~i~~~a~-~~-------~~E~ 268 (750)
T COG0068 198 EAIRKAAKLLKVGKIVAIKGIGGFHLACDARNEEAVAKLRKRKNRP-LKPFAVMAKDLETIEEFAE-VN-------DEEE 268 (750)
T ss_pred HHHHHHHHHHhhCCEEEEeecCceeeeecCCchHHHHHHHHhcCCC-CCCceeeeccHHHHHHhhc-cC-------HHHH
Confidence 3889999999999999999999999999999999999999999995 9999999999999999997 32 2455
Q ss_pred HHHHhcCCCCeEEEeccCCC--CChhhhccCccccccCCCCeEEEEeCChHHHHHHHH-HcCCcEEecccCCCCCCCCCC
Q 026381 93 RAVKHCLPGPYTFILTASKE--VPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQ-KMDAPLISTSVKWLKDNEWMV 169 (239)
Q Consensus 93 ~l~~~~wPGplTlIl~~~~~--lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~-~~g~PL~~TSAN~sg~~~~~~ 169 (239)
+++.. |-.--+++++++. +++. ..++.++|||++|.+|++..|++ ....|+++||||++|++ ...
T Consensus 269 ~lL~S--~~rPIVll~Kk~~~~~~~~---------iAP~l~~iGVMLPYtpLhhLLl~~~~~~~~VmTSaNl~g~P-m~~ 336 (750)
T COG0068 269 ELLTS--PSRPIVLLKKKKVFLLESN---------IAPGLHTIGVMLPYTPLHHLLLQESLDIPYVMTSANLPGEP-MAI 336 (750)
T ss_pred HHhcC--ccCceEEeccccccccccc---------cCCCCCCcceeecCCchhhhhhhhccCceEEEecCCCCCCC-ccc
Confidence 66532 3323344555543 2332 23567889999999999999998 77789999999999875 566
Q ss_pred CHhHHHHHcCCCcccEEEeCCC--CCCCCceEEEEECCCcEEEecCCCCCccceecc
Q 026381 170 DPVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEE 224 (239)
Q Consensus 170 ~~~~~~~~~~~~~vd~ild~g~--~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~ 224 (239)
+.+++.+.+.. -.|+++...+ ......+||.+.+|+..+||+.+|+.|+++++.
T Consensus 337 dN~eal~kL~~-IADyfL~HNR~I~~r~DDSVVrvV~g~~~~iRrSRGy~P~pi~lp 392 (750)
T COG0068 337 DNEEALEKLKG-IADYFLLHNREIVNRCDDSVVRVVAGRIAFIRRSRGYAPKPIELP 392 (750)
T ss_pred CCHHHHHHhhh-hhheeeecccccccccCCcceeEeCCceeeeehhcCCCCcceecC
Confidence 77777777763 7899998886 357889999999999999999999999999997
No 9
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.13 Score=49.88 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=103.3
Q ss_pred hHHHHHHHHHCCCeEEE-ecCceEE--------EEccCCChHHHHHHHHHhC-CCCCCCeEEEeCChHHHhhhhccCCCC
Q 026381 14 KLEPVVELLKEGAVGVV-PTDTLYA--------IVCDLKSHSAIERLRRIKN-VEPSKPLSILCRSLRDIDTYTTGFPRG 83 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~-PTdTvYg--------L~~~~~n~~Av~ri~~lK~-R~~~Kpl~llv~s~~~l~~~~~~~p~~ 83 (239)
-.+.+++.|..|+||+. -.--=|| |.++|.++...+||....+ |+.=+||+-.+- .|.+.+|.+
T Consensus 379 l~~~va~~LadgkvVgwfqGRmEfGPRALGnRSILadPr~~~~kd~iN~~vK~Re~FrPFAPsiL-~E~~~~~fe----- 452 (555)
T COG2192 379 LPDRVAELLADGKVVGWFQGRMEFGPRALGNRSILADPRDPGMKDKINLKVKFREGFRPFAPSIL-EEDVERYFE----- 452 (555)
T ss_pred HHHHHHHHHhCCCeEEEEeeccccCccccCCceeecCCCChHHHHHHHHHhcccCccCCcCcchh-hhhhhHHhh-----
Confidence 46789999999999874 4444444 7889999999999998777 999999976553 234444432
Q ss_pred CCCCchHHHHHHHhcCCCC-eEEEeccCC----CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHH----cCCc-
Q 026381 84 DGQGHANIFRAVKHCLPGP-YTFILTASK----EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQK----MDAP- 153 (239)
Q Consensus 84 ~~~~~~~~~~l~~~~wPGp-lTlIl~~~~----~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~----~g~P- 153 (239)
.--|-| .|++++.++ .+|......| .....-||=-.+|....|+++ +|.|
T Consensus 453 -------------~~~~sPyM~~~~~~~~~~r~~lpaV~HvDg-------TaR~QtV~r~~nP~y~~ll~aF~~~TG~gv 512 (555)
T COG2192 453 -------------LPSPSPYMTLVFRVREEFRERLPAVTHVDG-------TARPQTVRRDANPRYYGLLRAFKERTGVGV 512 (555)
T ss_pred -------------CCCCCCceeeeehhhHHHHhhCCceEeecC-------CccceeeccccChhHHHHHHHHHHhcCCcE
Confidence 234566 678888654 3666432223 233456666677888888866 4544
Q ss_pred EEecccCCCCCCCCCCCHhHHHHHcCCCcccEEEeCC
Q 026381 154 LISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 190 (239)
Q Consensus 154 L~~TSAN~sg~~~~~~~~~~~~~~~~~~~vd~ild~g 190 (239)
|+-||-|+.|++ ...++.++-..|...++|+.|=++
T Consensus 513 llNTSFN~~GEP-IVcsp~DA~~~f~~t~~d~Lvi~~ 548 (555)
T COG2192 513 LLNTSFNVHGEP-IVCSPADAIRTFLSTGLDALVLED 548 (555)
T ss_pred EEecccccCCCc-eecCHHHHHHHHHhCCCcEEEEcC
Confidence 678999999875 567888887777655788765444
No 10
>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.022 Score=49.86 Aligned_cols=203 Identities=24% Similarity=0.099 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHHCCCeEEEecCceEEEEcc----CCChHHHHHHHHHhCCC----------CCCCeEEEeCChHHHhhhh
Q 026381 12 SWKLEPVVELLKEGAVGVVPTDTLYAIVCD----LKSHSAIERLRRIKNVE----------PSKPLSILCRSLRDIDTYT 77 (239)
Q Consensus 12 ~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~----~~n~~Av~ri~~lK~R~----------~~Kpl~llv~s~~~l~~~~ 77 (239)
++....++.+++.+.+..+++++.|+..+. +.+....+++++.+ ++ .--|+.+|....+.
T Consensus 37 ~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~~-i~~~~~~L~~~l~PGPltlll~~~~~----- 110 (261)
T KOG3051|consen 37 ETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAIN-IPSLYLPLASYLWPGPLTLLLERADE----- 110 (261)
T ss_pred hhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhhc-chhhhhHHHhhcCCCceEEEeecchh-----
Confidence 445666778889999999999999986654 44556666666652 11 11245555444332
Q ss_pred ccCCCCCCCCchHHHHHHHhcCCCCeEEEeccCC------CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcC
Q 026381 78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASK------EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD 151 (239)
Q Consensus 78 ~~~p~~~~~~~~~~~~l~~~~wPGplTlIl~~~~------~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g 151 (239)
-+..-+.||--++-+.-.+ .++......+..++..+.+...++++-....++..+...-
T Consensus 111 ---------------~l~~~~~~~~~svAvRiP~~~~a~~li~~~~~Pla~tSAN~Ssr~s~tlai~~~~Dl~~~i~lil 175 (261)
T KOG3051|consen 111 ---------------CLSKLTNPGLPSVAVRIPDHPVASALIPKLGVPLALTSANASSRPSPTLAIHVFADLQPKIPLIL 175 (261)
T ss_pred ---------------hccccccCCCcceeEEccCCHHHHHHHHHhCCCccccccccccCCCCcchhhhhhhhccchhhee
Confidence 0111233443333332211 1111111111111123445566777777666666666554
Q ss_pred CcEEecccCCCCCCCCCCCHhHHHHHcCCCcccEEEeCCCCCCCCceEEEEECCCcEEEecCCCCCccceeccccccccc
Q 026381 152 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAI 231 (239)
Q Consensus 152 ~PL~~TSAN~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~~~~~~~ 231 (239)
.+..++|.--|-......++.++..-.+...-|+++++|+ ..+||++|.++...+++|+|..+...|+-....-.--.
T Consensus 176 DgG~c~~g~~~~~~~g~~~p~~i~~pgG~~~~~~vv~gGc--a~~~t~~~~~~~~~~~~~pG~~~~h~s~~~~~~~f~~~ 253 (261)
T KOG3051|consen 176 DGGACGSGVESTVVEGSTDPVDILRPGGITGEDIVVRGGC--AVESTKVDMTEPGEKVITPGMKYRHYSPTAKVDLFVLR 253 (261)
T ss_pred cCcccccCcCceeeccccCcceeeccCCccceeEEEecCc--cceeeeecccCCcceeecCCccccccchhhhhhhhccc
Confidence 4556666521111111344555555544334688999996 57899999999999999999999999988776333334
Q ss_pred cccCCC
Q 026381 232 EDLIPS 237 (239)
Q Consensus 232 ~~~~~~ 237 (239)
+++|-+
T Consensus 254 ~e~~~~ 259 (261)
T KOG3051|consen 254 TELDAS 259 (261)
T ss_pred hhhhhc
Confidence 455443
No 11
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=77.11 E-value=7.8 Score=33.95 Aligned_cols=59 Identities=25% Similarity=0.273 Sum_probs=41.7
Q ss_pred CChhhHHHHHHHHHCCCe--EEEecCceEE------EEccCCChHHHHHHHHHhCCCCCC----CeEEEeC
Q 026381 10 ADSWKLEPVVELLKEGAV--GVVPTDTLYA------IVCDLKSHSAIERLRRIKNVEPSK----PLSILCR 68 (239)
Q Consensus 10 ~~~~~l~~a~~~L~~Ggv--ii~PTdTvYg------L~~~~~n~~Av~ri~~lK~R~~~K----pl~llv~ 68 (239)
.+.++++.+.+.|++|+. .+||--|-.- +.-.+++.++++-...+=++.... |+++++.
T Consensus 99 ~~~~alk~~~~lLk~G~~~i~IfPEGtR~r~~~~g~~~p~~Fd~~~~~~~~~La~~s~~p~hi~Plai~~y 169 (235)
T cd07985 99 ANLATLKEMQQLLNEGGQLIWVAPSGGRDRPDANGEWYPDPFDPSAVEMMRLLAQKSRVPTHLYPMALLTY 169 (235)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCCCccCCccchHHHHHHHHHHHhcCCCceEEeeEEEee
Confidence 677899999999999985 5888755441 222367888888877777765443 5666644
No 12
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=58.41 E-value=9.8 Score=34.74 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCeEEEecCceEE---------E----------EccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhh
Q 026381 15 LEPVVELLKEGAVGVVPTDTLYA---------I----------VCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDT 75 (239)
Q Consensus 15 l~~a~~~L~~Ggvii~PTdTvYg---------L----------~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~ 75 (239)
+..+-+.|-.||+..||.|+.|. . +..+.+ +.+||.+++-+..++-.+++++|.+++.+
T Consensus 233 VaD~hr~L~~GGif~yP~~~~~~~gkLRllyEa~P~afi~EqAGG~as~--G~~~iLdi~p~~~hqR~p~~~GS~~eV~~ 310 (315)
T cd00354 233 VADVHRILVRGGIFLYPADKKSPKGKLRLLYEANPMAFLVEQAGGKATD--GKERILDIVPTSLHQRVPVILGSKEEVER 310 (315)
T ss_pred ehHhHHhhhcCeEEEccCCCCCCCCcEeeeeeccHHHHHHHHhCCeecC--CCccccccCCCccccCCCeEEeCHHHHHH
Confidence 44567788899999999999642 0 122223 34799999999999999999999999887
Q ss_pred hh
Q 026381 76 YT 77 (239)
Q Consensus 76 ~~ 77 (239)
+-
T Consensus 311 ~~ 312 (315)
T cd00354 311 VE 312 (315)
T ss_pred HH
Confidence 64
No 13
>PLN02262 fructose-1,6-bisphosphatase
Probab=53.89 E-value=9.4 Score=35.27 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCeEEEecCceEE-----E--------------EccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhh
Q 026381 15 LEPVVELLKEGAVGVVPTDTLYA-----I--------------VCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDT 75 (239)
Q Consensus 15 l~~a~~~L~~Ggvii~PTdTvYg-----L--------------~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~ 75 (239)
+.++-+.|-.||+..||.|..|- | +..+++ +.+||.+++=+..++-.+++++|.+++.+
T Consensus 252 VaD~hriL~~GGif~YP~d~~~~~GkLRllyEa~P~afi~EqAGG~As~--G~~~iLdi~p~~lHqR~pl~~GS~~eV~~ 329 (340)
T PLN02262 252 VADVHRTLLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLVEQAGGQAFT--GKQRALDLVPTKIHERSPIFLGSYDDVEE 329 (340)
T ss_pred hHHHHHHHhcCeEEeccCCCCCCCCcEEEEeecchHHHHHHHhCCcccc--CCccccccCCCccccCCCeEEeCHHHHHH
Confidence 55677888899999999998772 1 122223 45799999999999999999999999887
Q ss_pred hhc
Q 026381 76 YTT 78 (239)
Q Consensus 76 ~~~ 78 (239)
+..
T Consensus 330 ~~~ 332 (340)
T PLN02262 330 IKA 332 (340)
T ss_pred HHH
Confidence 653
No 14
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=51.60 E-value=10 Score=34.76 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=49.3
Q ss_pred hHHHHHHHHHCCCeEEEecCceEE-----E--------------EccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHh
Q 026381 14 KLEPVVELLKEGAVGVVPTDTLYA-----I--------------VCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PTdTvYg-----L--------------~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~ 74 (239)
-+.++-+.|-.|||..||.|..|- | +..+.+ +-+||.+++-...++-.+++++|.+++.
T Consensus 240 mVaD~hr~L~~GGif~YP~~~~~~~GkLRllyEa~P~afi~EqAGG~as~--G~~~iLd~~p~~lHqr~p~~~GS~~eV~ 317 (327)
T PRK09293 240 MVADVHRILLKGGIFLYPADEPYPNGKLRLLYEANPMAFLVEQAGGAASD--GKQRILDIEPESLHQRVPLFLGSKEEVE 317 (327)
T ss_pred ehHHHhHHhhcCeEEEcCCCCCCCCCcEEEEeecchHHHHHHHhCCcccc--CCccccccCCCccccCCCeEEeCHHHHH
Confidence 356778899999999999997662 1 122222 4579999999999999999999999988
Q ss_pred hhhc
Q 026381 75 TYTT 78 (239)
Q Consensus 75 ~~~~ 78 (239)
.+..
T Consensus 318 ~~~~ 321 (327)
T PRK09293 318 RVEE 321 (327)
T ss_pred HHHH
Confidence 8754
No 15
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=49.80 E-value=49 Score=30.67 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=44.4
Q ss_pred hHHHHHHHHHCCCeEEEec-CceE--------EEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhc
Q 026381 14 KLEPVVELLKEGAVGVVPT-DTLY--------AIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PT-dTvY--------gL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~ 78 (239)
..+++++.|.+|+||..=. -.=| .|.++|.+.+..+||.+.|+|..-.||+=.+- .|.+.+|.+
T Consensus 253 ~~~~~A~lLa~gkiVgwfqGr~EfGPRALGnRSILAdP~~~~~~d~iN~~iKRE~fRPfAPsvl-~E~a~~~f~ 325 (360)
T PF02543_consen 253 LAEQVAELLADGKIVGWFQGRMEFGPRALGNRSILADPRSPDMKDRINRRIKREWFRPFAPSVL-EEDAEEYFE 325 (360)
T ss_dssp HHHHHHHHHHTT--EEEE-SS-B-SSS--SSEEEEEESS-SSHHHHHHHTTS--TT---EEEEE-HHHHHHHBS
T ss_pred HHHHHHHHHHcCCEEEEEecCccccCccccccccccCCCChHHHHHHhhhcCccccCCcCcchh-HHHHHHhcc
Confidence 6789999999999987533 2223 48899999999999999999999999988876 678888865
No 16
>PLN02542 fructose-1,6-bisphosphatase
Probab=49.34 E-value=9.7 Score=36.09 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=48.0
Q ss_pred HHHHHHHHHCCCeEEEecCceEE-----E--------------EccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhh
Q 026381 15 LEPVVELLKEGAVGVVPTDTLYA-----I--------------VCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDT 75 (239)
Q Consensus 15 l~~a~~~L~~Ggvii~PTdTvYg-----L--------------~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~ 75 (239)
+.++-+.|-.|||+.||.|..|. | |..+.+ +.+||.+++=...++-.+++++|.+++.+
T Consensus 329 VaDvHRiLl~GGIF~YP~d~~~~~GKLRLLYEa~PmAfivEqAGG~Asd--G~~rILDi~P~~lHqR~Pl~~GS~~eV~~ 406 (412)
T PLN02542 329 VGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSD--GHQRILDIQPTEIHQRVPLYIGSVEEVEK 406 (412)
T ss_pred hHHHHHHhhcCeEEecCCCCCCCCCcEeEeeecchHHHHHHHhCCcccC--CCccccccCCCccccCCCeEEcCHHHHHH
Confidence 45677888889999999998762 1 222223 34799999999999999999999999888
Q ss_pred hh
Q 026381 76 YT 77 (239)
Q Consensus 76 ~~ 77 (239)
+.
T Consensus 407 ~~ 408 (412)
T PLN02542 407 LE 408 (412)
T ss_pred HH
Confidence 74
No 17
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=42.94 E-value=51 Score=28.18 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=44.4
Q ss_pred eEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHH-HHHhCCCCCCCeEEEeCChHHHhhhhc
Q 026381 2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERL-RRIKNVEPSKPLSILCRSLRDIDTYTT 78 (239)
Q Consensus 2 ~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri-~~lK~R~~~Kpl~llv~s~~~l~~~~~ 78 (239)
++-+||+.. +.+.+.++.+.+.|. |-..-=|..-.+.+.+.++ -.+|+ ..++|.++..+|.+++...++
T Consensus 2 ~~~iDP~k~--e~~~~ia~~v~~~gt-----DaI~VGGS~gvt~~~~~~~v~~ik~-~~~lPvilfp~~~~~i~~~aD 71 (205)
T TIGR01769 2 FTLIDPEKS--DEIEKIAKNAKDAGT-----DAIMVGGSLGIVESNLDQTVKKIKK-ITNLPVILFPGNVNGLSRYAD 71 (205)
T ss_pred ccccCCCcH--HHHHHHHHHHHhcCC-----CEEEEcCcCCCCHHHHHHHHHHHHh-hcCCCEEEECCCccccCcCCC
Confidence 567899998 666767766666532 2221111221255556655 45554 468999999999999988775
No 18
>PF00316 FBPase: Fructose-1-6-bisphosphatase; InterPro: IPR000146 This entry represents the fructose-1,6-bisphosphatase (FBPase) class 1 family. FBPase is a critical regulatory enzyme in gluconeogenesis that catalyses the removal of 1-phosphate from fructose 1,6-bis-phosphate to form fructose 6-phosphate [, ]. It is involved in many different metabolic pathways and found in most organisms. FBPase requires metal ions for catalysis (Mg2+ and Mn2+ being preferred) and the enzyme is potently inhibited by Li+. The fold of fructose-1,6-bisphosphatase was noted to be identical to that of inositol-1-phosphatase (IMPase) []. Inositol polyphosphate 1-phosphatase (IPPase), IMPase and FBPase share a sequence motif (Asp-Pro-Ile/Leu-Asp-Gly/Ser-Thr/Ser) which has been shown to bind metal ions and participate in catalysis. This motif is also found in the distantly-related fungal, bacterial and yeast IMPase homologues. It has been suggested that these proteins define an ancient structurally conserved family involved in diverse metabolic pathways, including inositol signalling, gluconeogenesis, sulphate assimilation and possibly quinone metabolism []. This entry also includes sedoheptulose-1,7-bisphosphatase, which is a member of the FBPase class 1 family.; GO: 0042578 phosphoric ester hydrolase activity, 0005975 carbohydrate metabolic process; PDB: 2GQ1_A 2QVR_A 2Q8M_B 2OX3_A 2OWZ_A 3KC0_C 2WBB_A 1FTA_C 2VT5_F 2Y5L_F ....
Probab=40.91 E-value=19 Score=33.06 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=43.4
Q ss_pred hHHHHHHHHHCCCeEEEecCceE----------------------EEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChH
Q 026381 14 KLEPVVELLKEGAVGVVPTDTLY----------------------AIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 71 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PTdTvY----------------------gL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~ 71 (239)
-+.++-++|-+|||..||.|.-| |.+.+- -+||.+++-...++-.+++++|.+
T Consensus 239 mVaD~HRiL~~GGif~YP~d~~~~~GKLRlLYEa~PmAflvEqAGG~As~G-----~~riLdi~p~~lHqR~pl~~GS~~ 313 (324)
T PF00316_consen 239 MVADVHRILLKGGIFLYPADKKYPNGKLRLLYEANPMAFLVEQAGGKASDG-----RERILDIVPESLHQRTPLFLGSAE 313 (324)
T ss_dssp HHHHHHHHHHHTCEEEE-SBSSBTTCSSBTTTTHHHHHHHHHHTTCEEESS-----SSBGGGS--SSTT-BE-EEEESHH
T ss_pred cchhHHHHHhhCcEEECCCCCCCCCCceeEEEeccHHHHHHHHcCCEeccC-----CcccccCCCCcccCCCCeEEcCHH
Confidence 35677889999999999998863 444432 279999999999999999999999
Q ss_pred HHhhhh
Q 026381 72 DIDTYT 77 (239)
Q Consensus 72 ~l~~~~ 77 (239)
++..+-
T Consensus 314 eV~~~~ 319 (324)
T PF00316_consen 314 EVEELE 319 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 19
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=36.32 E-value=88 Score=27.16 Aligned_cols=70 Identities=10% Similarity=0.173 Sum_probs=47.9
Q ss_pred eEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHH-HHHhCCCCCCCeEEEeCChHHHhhhhc
Q 026381 2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERL-RRIKNVEPSKPLSILCRSLRDIDTYTT 78 (239)
Q Consensus 2 ~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri-~~lK~R~~~Kpl~llv~s~~~l~~~~~ 78 (239)
++-+||+..+.....+.++.+.+.| ||-+.-=|.+-.+.+.++++ -++|+ ...|.++..+|.+++...++
T Consensus 3 ~~liDPdK~~~~~~~~~~~~~~~~g-----tdai~vGGS~~vt~~~~~~~v~~ik~--~~lPvilfp~~~~~i~~~aD 73 (223)
T TIGR01768 3 FTLIDPDKTNPSEADEIAKAAAESG-----TDAILIGGSQGVTYEKTDTLIEALRR--YGLPIILFPSNPTNVSRDAD 73 (223)
T ss_pred eeeECCCCCCccccHHHHHHHHhcC-----CCEEEEcCCCcccHHHHHHHHHHHhc--cCCCEEEeCCCccccCcCCC
Confidence 5778999987665666666666553 45444444443455666665 55664 34999999999999988775
No 20
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=33.97 E-value=50 Score=31.32 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHCCCeEEE-----------ecCceEEEEccCCChHHHHHHHHHhCCC
Q 026381 13 WKLEPVVELLKEGAVGVV-----------PTDTLYAIVCDLKSHSAIERLRRIKNVE 58 (239)
Q Consensus 13 ~~l~~a~~~L~~Ggvii~-----------PTdTvYgL~~~~~n~~Av~ri~~lK~R~ 58 (239)
+++.+....|+.||.++. |-+.- +.-+++|.++|+-.+++-++.
T Consensus 281 kslk~~~~lL~~Gg~~iwIaPsGgRdR~d~~~g~--~~papFD~~svd~mR~l~~~s 335 (426)
T PLN02349 281 RTLKEMALLLREGGQLIWIAPSGGRDRPDPLTGE--WTPAPFDPSAVDNMRRLTEKS 335 (426)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCCCCCccCCC--ccCCCCChHHHHHHHHHHHhc
Confidence 567888889999998876 31222 334678999999988887765
No 21
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=30.89 E-value=1.4e+02 Score=26.37 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=38.2
Q ss_pred eEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCCCHhHHHHHcCCCcccEEEeCCC
Q 026381 132 HVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV 191 (239)
Q Consensus 132 tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~ 191 (239)
.|=-=+.+++++-+=++..|.--++.=+-..|..--..+++.++-...+.+|.+|||.|.
T Consensus 132 ~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGi 191 (262)
T COG2022 132 VVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGI 191 (262)
T ss_pred EEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCC
Confidence 455556677887777788887544443333222112467777766655557899999997
No 22
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=30.02 E-value=1.1e+02 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=28.3
Q ss_pred EEeCCCCCCh-hhHHHHHHHHHCCCeEEEecCceEEEEccCC
Q 026381 3 VEADPSGADS-WKLEPVVELLKEGAVGVVPTDTLYAIVCDLK 43 (239)
Q Consensus 3 ~~~~~~~~~~-~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~ 43 (239)
+.+|...++. ..++.+.+.|+.||++++-.=-..|..+++.
T Consensus 148 VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~ 189 (234)
T PLN02781 148 AFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEE 189 (234)
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcc
Confidence 4455554433 4677889999999998884444458888764
No 23
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=29.36 E-value=86 Score=25.90 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHCCCeEEEecCce
Q 026381 12 SWKLEPVVELLKEGAVGVVPTDTL 35 (239)
Q Consensus 12 ~~~l~~a~~~L~~Ggvii~PTdTv 35 (239)
.+.+.++.++|+.||.+.+-||..
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCH
Confidence 457888999999999998887653
No 24
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=29.30 E-value=1.4e+02 Score=26.89 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=50.9
Q ss_pred EEeCCCCCChhhHHHHHHHHHCCC-eEEEecCceEEEEccCCChHHHHHHHHHhCC------CC--CCCeEEEeCChHHH
Q 026381 3 VEADPSGADSWKLEPVVELLKEGA-VGVVPTDTLYAIVCDLKSHSAIERLRRIKNV------EP--SKPLSILCRSLRDI 73 (239)
Q Consensus 3 ~~~~~~~~~~~~l~~a~~~L~~Gg-vii~PTdTvYgL~~~~~n~~Av~ri~~lK~R------~~--~Kpl~llv~s~~~l 73 (239)
+++||.+- -.++-+-+.-++|| -+++++-+.|.++..+...+..+|+|++-=| .. -+-++++--.+.++
T Consensus 12 ~H~np~~g--g~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~ 89 (285)
T COG1831 12 FHLNPKNG--GALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEV 89 (285)
T ss_pred eeecCCcC--cHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHH
Confidence 56777776 23443444555554 6889999999999999999999999987443 22 22466666666666
Q ss_pred hhhhc
Q 026381 74 DTYTT 78 (239)
Q Consensus 74 ~~~~~ 78 (239)
..+.+
T Consensus 90 ~~l~e 94 (285)
T COG1831 90 SRLAE 94 (285)
T ss_pred HHHHH
Confidence 66665
No 25
>PRK10148 hypothetical protein; Provisional
Probab=28.94 E-value=1e+02 Score=24.55 Aligned_cols=39 Identities=13% Similarity=-0.034 Sum_probs=25.3
Q ss_pred eEEeCCCCCChhhHHHHHHHHHCCCeEEEecCc-----eEEEEccC
Q 026381 2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDT-----LYAIVCDL 42 (239)
Q Consensus 2 ~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdT-----vYgL~~~~ 42 (239)
++.++.+ +.+.++++.+.|.+||-|+.|-+. .||-..|+
T Consensus 88 ~l~l~~~--d~ee~~~~~~aLa~gg~v~mpl~~~~wg~~~g~v~D~ 131 (147)
T PRK10148 88 TLVLDTQ--DVEEGKRWFDNLAANGKIEMAWQETFWAHGFGKVTDK 131 (147)
T ss_pred EEEEECC--CHHHHHHHHHHhhCCCEEEecchhcchhhccEEEECC
Confidence 3444444 455677888899999988877544 45555543
No 26
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=28.50 E-value=1e+02 Score=28.29 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=66.8
Q ss_pred hHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHHHH
Q 026381 14 KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFR 93 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~~~ 93 (239)
...+.+++|...+-|++|+ -.-+|+-.+.-..+.+.++|.+-++-+....+.+-..++.+++- -. .++.+.+
T Consensus 80 FMaETAkiLnPeK~VL~Pd---~~AgCsmA~~~~~~~~~~~~~~~P~~~vV~YvNtsA~vKA~~Di-~c----TSsNAvk 151 (324)
T COG0379 80 FMAETAKILNPEKTVLLPD---LEAGCSMADMITAEEVRAFKEKHPDAPVVTYVNTSAEVKAEADI-CC----TSSNAVK 151 (324)
T ss_pred ehHhhHhhcCCCCeEecCC---CCCCCCcccCCCHHHHHHHHHHCCCCceEEEeeChHHHHhhcCe-EE----ecchHHH
Confidence 4668899999999999998 34567766666678888899988899999999999999998862 11 1345778
Q ss_pred HHHhcCCCCeEEEecc
Q 026381 94 AVKHCLPGPYTFILTA 109 (239)
Q Consensus 94 l~~~~wPGplTlIl~~ 109 (239)
.++..+.|.--+.+|-
T Consensus 152 vVe~~~~~~~Iif~PD 167 (324)
T COG0379 152 VVESALDGDKILFLPD 167 (324)
T ss_pred HHHhccCCCcEEEcCc
Confidence 8876666666565553
No 27
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=27.79 E-value=1.3e+02 Score=20.44 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=18.5
Q ss_pred eEEeCCC-CCCh-hhHHHHHHHHHCCCeEEE
Q 026381 2 YVEADPS-GADS-WKLEPVVELLKEGAVGVV 30 (239)
Q Consensus 2 ~~~~~~~-~~~~-~~l~~a~~~L~~Ggvii~ 30 (239)
++.+.|. +.+. ..+++..+.+++||-+++
T Consensus 38 ll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 38 LLVIGPDLRLSEPEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHcCCEEEE
Confidence 4556666 5553 666777777777776664
No 28
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=26.75 E-value=59 Score=30.24 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCcEEecccCCCCCCCCCCCHhHHHHH---cCCCcccEEEeCCC
Q 026381 142 ICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADT---YGPEGLDFVVDGGV 191 (239)
Q Consensus 142 ~~~~Ll~~~g~PL~~TSAN~sg~~~~~~~~~~~~~~---~~~~~vd~ild~g~ 191 (239)
-+|+++...++|++.|--+..++- ++++..+. +-..++|+|.|.|.
T Consensus 120 g~R~~~gv~~rPli~Ti~kp~~gl----d~~~la~~~~~l~~gGvD~Ikdde~ 168 (367)
T cd08205 120 GLRRLLGVHDRPLLGTIIKPSIGL----SPEELAELAYELALGGIDLIKDDEL 168 (367)
T ss_pred hHHHHhCCCCCCeeeeeeCCCCCC----CHHHHHHHHHHHHhcCCCeeecccc
Confidence 467888889999999998876553 45444433 22348999987765
No 29
>PRK09375 quinolinate synthetase; Provisional
Probab=26.73 E-value=1.2e+02 Score=27.82 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHHH
Q 026381 13 WKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIF 92 (239)
Q Consensus 13 ~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~~ 92 (239)
+...+.+++|..++.|++|.. .-||.-.+.-..+.|.++|++-++-...-.+.+-..++.+++..= .++.+.
T Consensus 77 ~FMaEtAkIL~p~k~VllP~~---~AgC~mAd~~~~~~i~~lk~~~p~a~vVaYvNssaeVKA~aD~~c-----TSSnAl 148 (319)
T PRK09375 77 HFMAETAKILSPEKTVLLPDL---EAGCSLADMCPAEEFRAFKEAHPDATVVTYVNTSAAVKARADIVC-----TSSNAV 148 (319)
T ss_pred eehhhhHHhcCCCCeEECCCC---CCCCcccccCCHHHHHHHHHHCCCCEEEEEeCCCHHHHHhCCeEE-----eCHHHH
Confidence 345678899999999999987 456766566667788888887666666667777777777775211 022456
Q ss_pred HHHHhcCCCCeEEEec
Q 026381 93 RAVKHCLPGPYTFILT 108 (239)
Q Consensus 93 ~l~~~~wPGplTlIl~ 108 (239)
+.++++.++..-+.+|
T Consensus 149 ~iv~~~~~~~~IlF~P 164 (319)
T PRK09375 149 KIVEALPQGKKILFLP 164 (319)
T ss_pred HHHhccCCCCeEEEeC
Confidence 6666655555444444
No 30
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=26.48 E-value=1.9e+02 Score=24.58 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCeEEEecC------ceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhh
Q 026381 15 LEPVVELLKEGAVGVVPTD------TLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTY 76 (239)
Q Consensus 15 l~~a~~~L~~Ggvii~PTd------TvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~ 76 (239)
+++|++.|++|+.|++=.| +..-+.+..-+.+.+..+.+- .+.++-+.=+.+.+.++
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~-----~~Glicva~~~~~~~~L 63 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRH-----ASGLICVAMPEERADRL 63 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHH-----BCSEEEEEEEHHHHHHT
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHh-----cCCCeEecCCHHHHhHC
Confidence 5789999999999999875 356666666666655554432 33433333345555555
No 31
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=26.25 E-value=2.1e+02 Score=25.04 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHCCCeEEEecC------ceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhh
Q 026381 13 WKLEPVVELLKEGAVGVVPTD------TLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTY 76 (239)
Q Consensus 13 ~~l~~a~~~L~~Ggvii~PTd------TvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~ 76 (239)
..+++|++.|++|+.|++=.| +-.-+.+..-..+.+..+.+ ..+.++-+.=+.+...++
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r-----~~~GliCva~~~~~a~~L 83 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIR-----DGSGIVCLCLPGETLDRL 83 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHH-----HCCccEEeeCCHHHHhhC
Confidence 469999999999999998765 55556666566665555443 234555444455655554
No 32
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=25.65 E-value=48 Score=30.59 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHCCCeEEEec
Q 026381 11 DSWKLEPVVELLKEGAVGVVPT 32 (239)
Q Consensus 11 ~~~~l~~a~~~L~~Ggvii~PT 32 (239)
|.+.++.|.+.|+.||+++|-|
T Consensus 267 Q~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 267 QKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred HHHHHHHHHHhcCCCCEEEEEc
Confidence 5678899999999999999988
No 33
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=25.20 E-value=1.2e+02 Score=25.03 Aligned_cols=41 Identities=27% Similarity=0.185 Sum_probs=34.7
Q ss_pred CeEEeCCCCCChhhHHHHHHHHH--CCCeEEEecCceEEEEcc
Q 026381 1 MYVEADPSGADSWKLEPVVELLK--EGAVGVVPTDTLYAIVCD 41 (239)
Q Consensus 1 ~~~~~~~~~~~~~~l~~a~~~L~--~Ggvii~PTdTvYgL~~~ 41 (239)
.|+.+|..|-++..-+++.+.++ -..+.++-|||.+--+-.
T Consensus 76 ~lv~~DsNNm~~~lr~~i~~~~~~~~d~~ev~TTDtH~~~~~~ 118 (179)
T PF09843_consen 76 ALVLADSNNMEPGLREKIREALGDVVDEVEVMTTDTHFVNGES 118 (179)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhhhcceeEEecCcccEEccEE
Confidence 37889999999988888888888 468999999999876654
No 34
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=24.95 E-value=2.5e+02 Score=22.59 Aligned_cols=11 Identities=45% Similarity=0.117 Sum_probs=5.2
Q ss_pred eEEEecCceEE
Q 026381 27 VGVVPTDTLYA 37 (239)
Q Consensus 27 vii~PTdTvYg 37 (239)
++++=||..-.
T Consensus 106 v~illTDG~~~ 116 (177)
T cd01469 106 VLVVITDGESH 116 (177)
T ss_pred EEEEEeCCCCC
Confidence 34444665543
No 35
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=24.46 E-value=99 Score=23.96 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCCCCCh--hhHHHHHHHHHCCCeEEEec-CceEEEEcc
Q 026381 6 DPSGADS--WKLEPVVELLKEGAVGVVPT-DTLYAIVCD 41 (239)
Q Consensus 6 ~~~~~~~--~~l~~a~~~L~~Ggvii~PT-dTvYgL~~~ 41 (239)
-.+-|+. ..+++|.+.|++..+|+-|+ |.+|-|.+-
T Consensus 67 GsD~P~l~~~~l~~A~~~L~~~d~VlgPa~DGGy~LiG~ 105 (122)
T PF09837_consen 67 GSDCPDLTPDDLEQAFEALQRHDVVLGPAEDGGYYLIGL 105 (122)
T ss_dssp -SS-TT--HHHHHHHHHHTTT-SEEEEEBTTSSEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHhccCCEEEeeccCCCEEEEec
Confidence 3444443 68999999999999999997 566666553
No 36
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=24.14 E-value=3.6e+02 Score=24.55 Aligned_cols=80 Identities=11% Similarity=0.163 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHHH
Q 026381 13 WKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIF 92 (239)
Q Consensus 13 ~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~~ 92 (239)
+.+.+-++.|..++-|++|.-..+--.++..+. +.|.++|++-++-.+...+.+-..+..+++.+=. +..+.
T Consensus 62 ~fMae~a~~l~p~k~vilp~~~a~C~~a~~~~~---~~i~~lk~~~Pda~vvah~n~~aeVka~aD~v~T-----Ssna~ 133 (310)
T TIGR00550 62 HFMGETAKILNPEKTVLMPDLGAGCSMADMCPP---EEFKKLKERHPDAFVVTYVNTTAEVKALADIVCT-----SSNAV 133 (310)
T ss_pred chHHHHHHHhCCCCEEEccCCCCCCccccccCH---HHHHHHHHHCCCCEEEEECCCCHHHHHhCCEEEc-----hHHHH
Confidence 467788889999999999976665555555554 4677778776777888887887888887763211 33456
Q ss_pred HHHHhcCC
Q 026381 93 RAVKHCLP 100 (239)
Q Consensus 93 ~l~~~~wP 100 (239)
+.++....
T Consensus 134 ~~v~~~~~ 141 (310)
T TIGR00550 134 KVVEHLDK 141 (310)
T ss_pred HHHHhccc
Confidence 66666543
No 37
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=24.00 E-value=2.4e+02 Score=28.44 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=56.8
Q ss_pred CCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCC
Q 026381 6 DPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDG 85 (239)
Q Consensus 6 ~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~ 85 (239)
.|..-|..++.+.++.+++|+--. +++|+..+...- .+..+++ + .++|..|++.|...+.++..
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~----~l~Gvtgs~kt~-~~a~~~~--~--~~~p~Lvi~~n~~~A~ql~~------- 72 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQ----TLLGVTGSGKTF-TMANVIA--Q--VNRPTLVIAHNKTLAAQLYN------- 72 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcE----EEECCCCcHHHH-HHHHHHH--H--hCCCEEEEECCHHHHHHHHH-------
Confidence 467778889999999998874211 366766653222 2333332 2 46799999999988888754
Q ss_pred CCchHHHHHHHhcCCCCeEEEe-------------ccCCCCChh
Q 026381 86 QGHANIFRAVKHCLPGPYTFIL-------------TASKEVPKK 116 (239)
Q Consensus 86 ~~~~~~~~l~~~~wPGplTlIl-------------~~~~~lp~~ 116 (239)
-++.|+|..-...+ |..+.+|..
T Consensus 73 --------el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k 108 (655)
T TIGR00631 73 --------EFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEK 108 (655)
T ss_pred --------HHHHhCCCCeEEEEeeecccCCccccCCCccccccc
Confidence 23467788756666 777666554
No 38
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=23.48 E-value=5.1e+02 Score=22.80 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCC
Q 026381 11 DSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVE 58 (239)
Q Consensus 11 ~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~ 58 (239)
.+..++.+++.+++-|+..+--|-. .+.+++|..+..+.
T Consensus 89 ~~~av~~a~r~~~~aGa~aVkiEd~---------~~~~~~I~al~~ag 127 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKLEGG---------AEVAETIRALVDAG 127 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEcCc---------HHHHHHHHHHHHcC
Confidence 4456888899999777777766653 47788999998653
No 39
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=23.43 E-value=2.1e+02 Score=24.38 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=38.7
Q ss_pred hHHHHHHHHHCCCeEEEecCce------EEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhh
Q 026381 14 KLEPVVELLKEGAVGVVPTDTL------YAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTY 76 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PTdTv------YgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~ 76 (239)
.+++|++.|++|+.|++=.|-. .-+.+..-+.+.+..+.+ ..+.++-++=+.+...++
T Consensus 4 ~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~-----~~~GliC~~~~~~~a~~L 67 (199)
T TIGR00506 4 RVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRR-----HAGGLICVAITPDIADKL 67 (199)
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHH-----hCCCCEEEECCHHHHhhC
Confidence 5899999999999999987632 456666566665555543 234455444556666665
No 40
>COG0158 Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=23.18 E-value=57 Score=29.87 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=46.7
Q ss_pred hHHHHHHHHHCCCeEEEecCceEE-------------------EEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHh
Q 026381 14 KLEPVVELLKEGAVGVVPTDTLYA-------------------IVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PTdTvYg-------------------L~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~ 74 (239)
-+.+.-+.|-+||+..||.|.-+. -+..++ +..+||.++.--..++--+++++|-+++.
T Consensus 239 mVADvHRiL~~GGiF~YP~~~~~P~GKLRllYEanPmAflvEqAGG~At--dg~~rILDi~P~~lHqR~p~~~GS~~eV~ 316 (326)
T COG0158 239 MVADVHRILLKGGIFLYPSDKRAPNGKLRLLYEANPMAFLVEQAGGKAT--DGKQRILDIVPEKLHQRVPLFLGSKEEVE 316 (326)
T ss_pred HHHHHHHHHHcCceEeccccCCCCCCceeeeeecchHHHHHHHhcCccc--CCCccccccCchhhccccceEeccHHHHH
Confidence 355667788889999999998882 112222 56788998887777788888889988887
Q ss_pred hhhc
Q 026381 75 TYTT 78 (239)
Q Consensus 75 ~~~~ 78 (239)
.+-.
T Consensus 317 ~~~~ 320 (326)
T COG0158 317 KLER 320 (326)
T ss_pred HHHH
Confidence 7643
No 41
>COG4506 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.56 E-value=69 Score=25.83 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=18.2
Q ss_pred eEEEEECCCcEEEecCCCC
Q 026381 198 TVVDMTGTYPKIIRQGKGP 216 (239)
Q Consensus 198 TIVdl~~~~~~ilR~G~~~ 216 (239)
|++.+.++.+.++|.|++.
T Consensus 56 TtlKi~d~e~~liR~G~v~ 74 (143)
T COG4506 56 TTLKIDDDELLLIRSGDVN 74 (143)
T ss_pred EEEEEcCCEEEEEEcccch
Confidence 9999999999999999997
No 42
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=22.02 E-value=66 Score=28.15 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.6
Q ss_pred ChhhHHHHHHHHHCCCeEEEecCc
Q 026381 11 DSWKLEPVVELLKEGAVGVVPTDT 34 (239)
Q Consensus 11 ~~~~l~~a~~~L~~Ggvii~PTdT 34 (239)
+.+.++.+.+.|+.||.++|-|=|
T Consensus 178 q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 178 QKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCC
Confidence 345888999999999999977644
No 43
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=21.70 E-value=2.3e+02 Score=24.56 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=41.8
Q ss_pred hHHHHHHHHHCCCeEEEecC------ceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhh
Q 026381 14 KLEPVVELLKEGAVGVVPTD------TLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTY 76 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PTd------TvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~ 76 (239)
.+++|++.|++|+.|++=-| +-.-+.+..-+.+.+..+.+ ....++-+.=+.+...++
T Consensus 2 ~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~-----~a~GliCval~~~~a~~L 65 (219)
T PRK05773 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRK-----NAGGLICYATSNSEGKTL 65 (219)
T ss_pred CHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHH-----HCCceEEEeCCHHHHhhC
Confidence 47899999999999988763 66677777777776665543 245566666667777775
No 44
>PLN02476 O-methyltransferase
Probab=21.11 E-value=1.5e+02 Score=26.63 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=28.9
Q ss_pred eEEeCCCCCCh-hhHHHHHHHHHCCCeEEEecCceE-EEEccCC
Q 026381 2 YVEADPSGADS-WKLEPVVELLKEGAVGVVPTDTLY-AIVCDLK 43 (239)
Q Consensus 2 ~~~~~~~~~~~-~~l~~a~~~L~~Ggvii~PTdTvY-gL~~~~~ 43 (239)
|+-||++..+. ..++.+.+.|+.||+|++- ++.| |..+++.
T Consensus 197 ~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D-NvL~~G~V~d~~ 239 (278)
T PLN02476 197 FAFVDADKRMYQDYFELLLQLVRVGGVIVMD-NVLWHGRVADPL 239 (278)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCCcEEEEe-cCccCCcccCcc
Confidence 45567666554 3678889999999999984 4554 6677653
No 45
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=20.73 E-value=2.5e+02 Score=25.02 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=41.9
Q ss_pred eEEeCCCCCChhhHHHHHHHHHCCC-----eEEE----------e-c-------CceE-EEEccCCChHHHHHHHHHhCC
Q 026381 2 YVEADPSGADSWKLEPVVELLKEGA-----VGVV----------P-T-------DTLY-AIVCDLKSHSAIERLRRIKNV 57 (239)
Q Consensus 2 ~~~~~~~~~~~~~l~~a~~~L~~Gg-----vii~----------P-T-------dTvY-gL~~~~~n~~Av~ri~~lK~R 57 (239)
++-+-|. .+...+.++++.+.+.| ++++ + + ...| |++..+....+++.+++++++
T Consensus 161 ~vKl~p~-~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~ 239 (294)
T cd04741 161 GVKTPPY-TDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRL 239 (294)
T ss_pred EEEeCCC-CCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHh
Confidence 4455553 35556788888887653 5542 1 1 1234 566677788899999999887
Q ss_pred CC-CCCeEEEeCChHH
Q 026381 58 EP-SKPLSILCRSLRD 72 (239)
Q Consensus 58 ~~-~Kpl~llv~s~~~ 72 (239)
-. +-|+ +-++.+..
T Consensus 240 ~~~~ipI-ig~GGI~s 254 (294)
T cd04741 240 LPSEIQI-IGVGGVLD 254 (294)
T ss_pred cCCCCCE-EEeCCCCC
Confidence 54 2343 33344433
No 46
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=20.60 E-value=1.3e+02 Score=24.26 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=23.4
Q ss_pred EEeCCCCCChhhHHHHHHHHHCCC---eEEEecCceEE
Q 026381 3 VEADPSGADSWKLEPVVELLKEGA---VGVVPTDTLYA 37 (239)
Q Consensus 3 ~~~~~~~~~~~~l~~a~~~L~~Gg---vii~PTdTvYg 37 (239)
+-|+.+++ ...++.+.+.|++|+ +++||--|--.
T Consensus 72 i~V~r~~~-~~~~~~~~~~l~~g~~~~l~IFPEGtR~~ 108 (163)
T cd07988 72 IPVDRSRA-GGLVEQVVEEFRRREEFVLAIAPEGTRSK 108 (163)
T ss_pred EEeEcCCc-ccHHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 34566664 347788888888763 78999887544
No 47
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=20.58 E-value=44 Score=30.05 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=20.1
Q ss_pred ccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCC
Q 026381 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLK 163 (239)
Q Consensus 126 ~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg 163 (239)
.++.++++|+|++=..+ +.|.|++.||.++||
T Consensus 102 ~NG~rGt~GikI~L~~i------~~g~pviitsG~LSG 133 (281)
T PF05785_consen 102 SNGARGTNGIKIALSDI------KEGKPVIITSGALSG 133 (281)
T ss_dssp --BTEEEEEEEEEGGG-------BTTB-EEEE---BSS
T ss_pred cCCCCcceeEEEEHHHc------CCCCeEEEeCCccCC
Confidence 34678899999985443 357799999999986
No 48
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=20.55 E-value=1.3e+02 Score=26.37 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=28.8
Q ss_pred eEEeCCCCCCh-hhHHHHHHHHHCCCeEEEecCceEEEEccCC
Q 026381 2 YVEADPSGADS-WKLEPVVELLKEGAVGVVPTDTLYAIVCDLK 43 (239)
Q Consensus 2 ~~~~~~~~~~~-~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~ 43 (239)
|+-||.+..+. ..++.+.+.|+.||+|++----..|..+++.
T Consensus 159 ~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~ 201 (247)
T PLN02589 159 FIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPP 201 (247)
T ss_pred EEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCcc
Confidence 34455554444 4677888999999999985555567777763
No 49
>PLN02628 fructose-1,6-bisphosphatase family protein
Probab=20.51 E-value=91 Score=29.01 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCeEEEecCce---EEE----------EccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhc
Q 026381 15 LEPVVELLKEGAVGVVPTDTL---YAI----------VCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78 (239)
Q Consensus 15 l~~a~~~L~~Ggvii~PTdTv---YgL----------~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~ 78 (239)
+..+-+.|-.||++.||.+-. |=- +..+.+ +.+||.+++-...++--+++++|.+++..+..
T Consensus 263 VaD~Hr~L~~GGif~YP~~KLRLlYEa~PmAfiiEqAGG~As~--G~~~ILdi~p~~lHqR~p~~~GS~~eV~~~~~ 337 (351)
T PLN02628 263 VADLHRTILYGGIAMNPRSHLRLVYEANPLSFLVEQAGGRGSD--GKRRILSIQPVKLHQRLPLFLGSSEDVLELES 337 (351)
T ss_pred hHHHHHHhhcCeEEECcccceeeeeecchHHHHHHhcCCcccC--CCccccccCCCcccccCCeEEcCHHHHHHHHH
Confidence 456778888999999998852 211 122222 45699999999999999999999998888754
Done!